Query 010314
Match_columns 513
No_of_seqs 573 out of 3530
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 23:04:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 9.1E-70 2E-74 598.4 41.4 388 103-512 23-418 (613)
2 KOG0065 Pleiotropic drug resis 100.0 1E-69 2.2E-74 610.5 29.6 381 104-511 786-1182(1391)
3 PLN03211 ABC transporter G-25; 100.0 4.7E-64 1E-68 558.1 48.1 390 103-512 37-467 (659)
4 TIGR00955 3a01204 The Eye Pigm 100.0 1.3E-64 2.7E-69 561.3 42.7 374 121-512 36-421 (617)
5 PLN03140 ABC transporter G fam 100.0 6.2E-64 1.3E-68 593.9 46.1 385 103-512 865-1276(1470)
6 TIGR00956 3a01205 Pleiotropic 100.0 1.3E-63 2.8E-68 592.4 45.6 377 122-512 73-481 (1394)
7 TIGR00956 3a01205 Pleiotropic 100.0 1.3E-62 2.8E-67 583.9 46.8 382 104-511 758-1156(1394)
8 PLN03140 ABC transporter G fam 100.0 2.8E-61 6E-66 571.3 42.2 379 122-512 177-598 (1470)
9 COG1126 GlnQ ABC-type polar am 100.0 1.6E-55 3.5E-60 414.0 23.5 218 105-337 2-225 (240)
10 KOG0065 Pleiotropic drug resis 100.0 1.9E-53 4.2E-58 479.2 26.5 377 122-510 127-518 (1391)
11 COG1125 OpuBA ABC-type proline 100.0 3.6E-52 7.8E-57 398.7 23.4 226 106-360 2-235 (309)
12 COG1135 AbcC ABC-type metal io 100.0 9.5E-52 2.1E-56 406.5 23.2 221 106-337 2-231 (339)
13 COG1116 TauB ABC-type nitrate/ 100.0 6.6E-51 1.4E-55 392.9 24.0 204 105-324 3-207 (248)
14 COG1127 Ttg2A ABC-type transpo 100.0 1.2E-50 2.7E-55 386.4 24.1 220 103-337 6-235 (263)
15 COG1120 FepC ABC-type cobalami 100.0 3.8E-50 8.1E-55 394.0 22.9 217 105-336 2-227 (258)
16 COG3842 PotA ABC-type spermidi 100.0 3.9E-50 8.5E-55 409.9 23.4 219 104-337 4-226 (352)
17 COG1131 CcmA ABC-type multidru 100.0 3E-49 6.5E-54 400.4 27.2 221 105-340 4-229 (293)
18 COG1136 SalX ABC-type antimicr 100.0 2.9E-49 6.3E-54 380.7 25.4 209 106-326 2-220 (226)
19 COG3839 MalK ABC-type sugar tr 100.0 2.9E-49 6.4E-54 401.5 25.1 217 105-337 3-223 (338)
20 COG3638 ABC-type phosphate/pho 100.0 2.5E-49 5.4E-54 376.5 21.1 220 104-337 2-237 (258)
21 COG1118 CysA ABC-type sulfate/ 100.0 1.7E-49 3.7E-54 389.8 20.5 219 104-337 1-227 (345)
22 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 9.2E-49 2E-53 382.4 24.7 217 104-337 3-227 (254)
23 COG1124 DppF ABC-type dipeptid 100.0 9.8E-49 2.1E-53 374.8 23.7 220 104-337 2-231 (252)
24 COG4555 NatA ABC-type Na+ tran 100.0 2E-48 4.2E-53 361.5 21.1 216 106-337 2-222 (245)
25 COG1123 ATPase components of v 100.0 1.4E-47 3E-52 406.5 27.3 270 58-337 231-519 (539)
26 COG1117 PstB ABC-type phosphat 100.0 4.6E-48 1E-52 362.2 20.6 222 104-337 6-237 (253)
27 TIGR02314 ABC_MetN D-methionin 100.0 7.5E-47 1.6E-51 390.1 29.4 219 106-336 2-229 (343)
28 PRK13537 nodulation ABC transp 100.0 8.7E-47 1.9E-51 385.1 28.6 218 104-337 6-227 (306)
29 PRK11650 ugpC glycerol-3-phosp 100.0 1.4E-46 3.1E-51 390.5 29.9 218 105-337 3-224 (356)
30 TIGR03265 PhnT2 putative 2-ami 100.0 1.7E-46 3.7E-51 389.5 29.4 217 105-337 4-224 (353)
31 cd03261 ABC_Org_Solvent_Resist 100.0 1.8E-46 3.9E-51 368.6 27.6 216 106-336 1-225 (235)
32 PRK11432 fbpC ferric transport 100.0 2.3E-46 4.9E-51 388.1 29.5 218 104-337 5-226 (351)
33 COG2884 FtsE Predicted ATPase 100.0 4E-47 8.6E-52 350.0 19.9 211 106-331 2-220 (223)
34 TIGR03258 PhnT 2-aminoethylpho 100.0 5.1E-46 1.1E-50 386.8 29.3 219 105-337 5-228 (362)
35 PRK10851 sulfate/thiosulfate t 100.0 6E-46 1.3E-50 385.4 29.6 219 104-337 1-226 (353)
36 PRK13536 nodulation factor exp 100.0 8.2E-46 1.8E-50 382.6 29.3 219 104-338 40-262 (340)
37 PRK09452 potA putrescine/sperm 100.0 1.2E-45 2.5E-50 385.5 30.1 218 104-337 13-234 (375)
38 COG3840 ThiQ ABC-type thiamine 100.0 1.5E-46 3.1E-51 343.9 19.9 213 106-336 2-218 (231)
39 COG0444 DppD ABC-type dipeptid 100.0 7.8E-46 1.7E-50 369.1 25.6 227 106-337 2-243 (316)
40 TIGR01288 nodI ATP-binding ABC 100.0 2.2E-45 4.8E-50 374.5 29.4 218 104-337 3-224 (303)
41 cd03296 ABC_CysA_sulfate_impor 100.0 2.8E-45 6.1E-50 361.2 28.9 218 104-336 1-225 (239)
42 COG1122 CbiO ABC-type cobalt t 100.0 4.9E-46 1.1E-50 363.8 22.9 218 104-337 2-228 (235)
43 cd03265 ABC_DrrA DrrA is the A 100.0 2.2E-45 4.8E-50 357.4 27.0 213 106-334 1-218 (220)
44 PRK11607 potG putrescine trans 100.0 3.5E-45 7.7E-50 382.4 30.4 218 104-337 18-239 (377)
45 cd03259 ABC_Carb_Solutes_like 100.0 2E-45 4.3E-50 355.8 26.3 209 106-330 1-213 (213)
46 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.2E-45 7E-50 356.2 27.8 215 106-332 1-218 (220)
47 cd03219 ABC_Mj1267_LivG_branch 100.0 1.9E-45 4E-50 361.3 26.4 216 106-336 1-231 (236)
48 TIGR00960 3a0501s02 Type II (G 100.0 1.6E-45 3.4E-50 357.3 25.4 207 106-326 2-216 (216)
49 PRK11000 maltose/maltodextrin 100.0 3E-45 6.6E-50 382.6 29.2 217 105-337 3-223 (369)
50 COG0411 LivG ABC-type branched 100.0 6.3E-46 1.4E-50 355.8 20.6 219 104-337 3-239 (250)
51 cd03218 ABC_YhbG The ABC trans 100.0 4.9E-45 1.1E-49 357.5 27.3 215 106-336 1-221 (232)
52 PRK13643 cbiO cobalt transport 100.0 4.9E-45 1.1E-49 369.4 28.1 232 106-349 2-248 (288)
53 PRK11153 metN DL-methionine tr 100.0 6.1E-45 1.3E-49 377.1 29.3 219 106-336 2-229 (343)
54 COG1137 YhbG ABC-type (unclass 100.0 1E-46 2.2E-51 349.7 13.9 219 104-337 3-228 (243)
55 COG4172 ABC-type uncharacteriz 100.0 4.3E-45 9.2E-50 368.4 26.8 264 58-337 234-516 (534)
56 TIGR03522 GldA_ABC_ATP gliding 100.0 7.1E-45 1.5E-49 370.4 28.8 217 104-337 1-221 (301)
57 cd03301 ABC_MalK_N The N-termi 100.0 7.3E-45 1.6E-49 351.7 27.2 209 106-330 1-213 (213)
58 cd03258 ABC_MetN_methionine_tr 100.0 6.9E-45 1.5E-49 356.8 27.4 218 106-335 2-228 (233)
59 PRK13637 cbiO cobalt transport 100.0 1.3E-44 2.8E-49 366.1 30.1 222 105-337 2-234 (287)
60 PRK09493 glnQ glutamine ABC tr 100.0 1.1E-44 2.4E-49 357.0 28.7 216 106-336 2-224 (240)
61 cd03260 ABC_PstB_phosphate_tra 100.0 5.6E-45 1.2E-49 356.1 25.8 214 106-334 1-226 (227)
62 PRK15079 oligopeptide ABC tran 100.0 1.3E-44 2.9E-49 372.4 29.7 224 104-337 7-251 (331)
63 TIGR01188 drrA daunorubicin re 100.0 5.8E-45 1.2E-49 371.3 26.6 206 122-338 5-214 (302)
64 PRK09473 oppD oligopeptide tra 100.0 1.9E-44 4.1E-49 371.3 30.7 229 104-337 11-251 (330)
65 PRK11264 putative amino-acid A 100.0 1.2E-44 2.5E-49 358.9 27.9 217 105-336 3-232 (250)
66 cd03256 ABC_PhnC_transporter A 100.0 9.5E-45 2.1E-49 357.2 26.9 216 106-335 1-232 (241)
67 cd03266 ABC_NatA_sodium_export 100.0 1.1E-44 2.4E-49 351.7 26.9 213 106-330 2-218 (218)
68 TIGR01186 proV glycine betaine 100.0 7.8E-45 1.7E-49 377.3 27.5 206 121-337 4-219 (363)
69 cd03224 ABC_TM1139_LivF_branch 100.0 8.7E-45 1.9E-49 353.2 26.1 212 106-335 1-219 (222)
70 PRK13634 cbiO cobalt transport 100.0 1.5E-44 3.2E-49 366.3 28.7 220 105-336 2-234 (290)
71 cd03263 ABC_subfamily_A The AB 100.0 1.2E-44 2.6E-49 351.9 26.7 214 106-334 1-218 (220)
72 PRK11831 putative ABC transpor 100.0 1.9E-44 4E-49 361.7 28.7 218 104-336 6-232 (269)
73 PRK09536 btuD corrinoid ABC tr 100.0 1.2E-44 2.7E-49 380.2 28.4 217 105-336 3-227 (402)
74 cd03269 ABC_putative_ATPase Th 100.0 1.1E-44 2.4E-49 349.9 25.7 209 106-330 1-210 (210)
75 PRK13651 cobalt transporter AT 100.0 1.2E-44 2.7E-49 368.9 27.2 221 105-337 2-254 (305)
76 cd03268 ABC_BcrA_bacitracin_re 100.0 1.2E-44 2.6E-49 349.1 25.3 205 106-330 1-208 (208)
77 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 9.4E-45 2E-49 352.2 24.7 208 106-326 1-218 (218)
78 COG0410 LivF ABC-type branched 100.0 1.3E-44 2.8E-49 344.3 24.8 216 105-337 3-226 (237)
79 PRK13631 cbiO cobalt transport 100.0 3.1E-44 6.8E-49 368.2 29.5 232 104-347 20-278 (320)
80 PRK13647 cbiO cobalt transport 100.0 5E-44 1.1E-48 359.5 30.2 216 105-335 4-225 (274)
81 TIGR02315 ABC_phnC phosphonate 100.0 1E-44 2.2E-49 357.6 24.7 216 106-335 2-233 (243)
82 PRK11308 dppF dipeptide transp 100.0 3.9E-44 8.6E-49 368.5 30.0 224 104-337 4-244 (327)
83 PRK11022 dppD dipeptide transp 100.0 3.8E-44 8.2E-49 368.6 29.8 228 105-337 3-243 (326)
84 PRK13646 cbiO cobalt transport 100.0 2.5E-44 5.3E-49 363.9 27.6 222 104-337 1-235 (286)
85 COG4175 ProV ABC-type proline/ 100.0 3.1E-45 6.7E-50 360.1 20.3 223 104-337 3-254 (386)
86 PRK10895 lipopolysaccharide AB 100.0 2.9E-44 6.3E-49 354.3 27.1 217 105-336 3-225 (241)
87 TIGR00972 3a0107s01c2 phosphat 100.0 4.7E-44 1E-48 354.1 28.7 217 106-336 2-231 (247)
88 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.7E-44 8E-49 353.8 27.7 216 106-336 1-224 (242)
89 PRK11124 artP arginine transpo 100.0 3.3E-44 7.1E-49 354.1 27.2 216 104-335 1-228 (242)
90 PRK13641 cbiO cobalt transport 100.0 4.1E-44 9E-49 362.4 28.5 221 105-337 2-234 (287)
91 cd03294 ABC_Pro_Gly_Bertaine T 100.0 2.4E-44 5.1E-49 360.9 26.5 214 107-336 26-249 (269)
92 PRK10619 histidine/lysine/argi 100.0 4.8E-44 1E-48 356.2 28.2 218 104-336 4-240 (257)
93 cd03292 ABC_FtsE_transporter F 100.0 3.3E-44 7.2E-49 347.2 25.8 206 106-326 1-214 (214)
94 TIGR02673 FtsE cell division A 100.0 4.2E-44 9E-49 346.7 26.0 205 106-325 2-214 (214)
95 PRK13650 cbiO cobalt transport 100.0 7.4E-44 1.6E-48 359.2 28.8 219 105-337 4-229 (279)
96 PRK11248 tauB taurine transpor 100.0 9.2E-44 2E-48 354.0 28.8 212 106-333 2-216 (255)
97 TIGR03005 ectoine_ehuA ectoine 100.0 8.4E-44 1.8E-48 353.4 28.3 216 106-336 1-235 (252)
98 cd03262 ABC_HisP_GlnQ_permease 100.0 5.1E-44 1.1E-48 345.6 26.0 206 106-326 1-213 (213)
99 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.4E-43 2.9E-48 348.5 29.0 215 106-337 2-221 (236)
100 PRK11300 livG leucine/isoleuci 100.0 9E-44 2E-48 353.5 28.0 217 105-336 5-242 (255)
101 PRK11614 livF leucine/isoleuci 100.0 7.3E-44 1.6E-48 350.5 26.9 214 105-336 5-225 (237)
102 PRK11247 ssuB aliphatic sulfon 100.0 5.7E-44 1.2E-48 355.8 26.4 208 104-333 11-219 (257)
103 cd03264 ABC_drug_resistance_li 100.0 5.4E-44 1.2E-48 345.3 25.3 207 106-330 1-211 (211)
104 PRK11629 lolD lipoprotein tran 100.0 1.6E-43 3.6E-48 347.3 29.1 215 105-332 5-229 (233)
105 cd03226 ABC_cobalt_CbiO_domain 100.0 3.1E-44 6.7E-49 345.6 23.0 202 107-327 1-205 (205)
106 cd03257 ABC_NikE_OppD_transpor 100.0 1.2E-43 2.6E-48 346.4 27.2 214 106-330 2-228 (228)
107 PRK10908 cell division protein 100.0 1.2E-43 2.6E-48 345.7 27.0 207 106-327 2-216 (222)
108 PRK13649 cbiO cobalt transport 100.0 1.9E-43 4.2E-48 356.2 29.2 222 104-337 1-234 (280)
109 COG1123 ATPase components of v 100.0 6.3E-44 1.4E-48 378.7 26.4 229 104-338 4-245 (539)
110 TIGR03411 urea_trans_UrtD urea 100.0 1.5E-43 3.1E-48 349.3 27.3 215 105-335 2-229 (242)
111 PRK15093 antimicrobial peptide 100.0 2.5E-43 5.4E-48 363.3 29.7 228 105-337 3-248 (330)
112 cd03235 ABC_Metallic_Cations A 100.0 3.7E-44 8.1E-49 346.9 22.1 207 108-330 2-213 (213)
113 PRK10070 glycine betaine trans 100.0 1.7E-43 3.8E-48 371.3 28.9 222 105-337 4-254 (400)
114 TIGR02211 LolD_lipo_ex lipopro 100.0 2.1E-43 4.5E-48 343.5 26.8 209 106-327 2-220 (221)
115 TIGR03415 ABC_choXWV_ATP choli 100.0 1.9E-43 4.1E-48 368.6 28.3 204 122-336 36-253 (382)
116 PRK13548 hmuV hemin importer A 100.0 3.2E-43 6.9E-48 350.7 28.6 216 105-336 2-229 (258)
117 PRK13636 cbiO cobalt transport 100.0 3E-43 6.4E-48 355.5 28.6 218 105-337 5-231 (283)
118 PRK14273 phosphate ABC transpo 100.0 3.2E-43 7E-48 349.5 28.2 219 104-336 6-237 (254)
119 PRK13638 cbiO cobalt transport 100.0 2.7E-43 5.9E-48 353.6 27.9 215 106-336 2-224 (271)
120 TIGR03740 galliderm_ABC gallid 100.0 3.1E-43 6.8E-48 342.9 27.5 208 106-333 1-209 (223)
121 PRK09984 phosphonate/organopho 100.0 2.8E-43 6E-48 351.7 27.7 219 105-335 4-240 (262)
122 TIGR01978 sufC FeS assembly AT 100.0 2.6E-43 5.7E-48 347.4 27.2 216 106-335 1-232 (243)
123 cd03234 ABCG_White The White s 100.0 2.4E-43 5.3E-48 344.5 26.5 216 105-330 3-226 (226)
124 cd03225 ABC_cobalt_CbiO_domain 100.0 1.4E-43 3.1E-48 342.2 24.5 205 107-325 1-211 (211)
125 TIGR02769 nickel_nikE nickel i 100.0 2.9E-43 6.3E-48 352.2 27.5 222 105-336 2-239 (265)
126 PRK11231 fecE iron-dicitrate t 100.0 3E-43 6.5E-48 350.1 27.3 216 105-335 2-225 (255)
127 PRK14242 phosphate transporter 100.0 5E-43 1.1E-47 347.9 28.8 223 104-336 5-236 (253)
128 PRK14268 phosphate ABC transpo 100.0 5.1E-43 1.1E-47 349.1 28.7 218 104-336 11-241 (258)
129 PRK14267 phosphate ABC transpo 100.0 4E-43 8.6E-48 348.6 27.8 223 105-336 4-236 (253)
130 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.1E-43 4.5E-48 341.2 25.1 207 106-330 1-211 (211)
131 PRK13644 cbiO cobalt transport 100.0 4.2E-43 9.1E-48 352.8 28.1 215 106-336 2-223 (274)
132 PRK13639 cbiO cobalt transport 100.0 6.7E-43 1.4E-47 351.5 29.6 216 106-337 2-226 (275)
133 TIGR03410 urea_trans_UrtE urea 100.0 2.8E-43 6.1E-48 344.7 26.2 211 106-335 1-219 (230)
134 COG4152 ABC-type uncharacteriz 100.0 2.8E-44 6.1E-49 342.4 18.3 219 105-339 2-221 (300)
135 PRK13635 cbiO cobalt transport 100.0 5.4E-43 1.2E-47 352.9 28.1 218 105-337 5-229 (279)
136 PRK10575 iron-hydroxamate tran 100.0 3.8E-43 8.3E-48 351.4 26.8 218 104-336 10-236 (265)
137 PRK15112 antimicrobial peptide 100.0 5.5E-43 1.2E-47 350.7 27.7 222 105-336 4-238 (267)
138 PRK13652 cbiO cobalt transport 100.0 8.2E-43 1.8E-47 351.2 29.0 218 105-337 3-227 (277)
139 PRK10253 iron-enterobactin tra 100.0 4.8E-43 1E-47 350.7 27.1 218 104-336 6-232 (265)
140 PRK14247 phosphate ABC transpo 100.0 8.5E-43 1.8E-47 345.7 28.6 223 105-336 3-233 (250)
141 PRK10771 thiQ thiamine transpo 100.0 6.6E-43 1.4E-47 342.8 27.4 213 106-336 2-218 (232)
142 PRK14250 phosphate ABC transpo 100.0 6E-43 1.3E-47 345.2 27.1 212 104-336 2-220 (241)
143 PRK10584 putative ABC transpor 100.0 1E-42 2.2E-47 340.4 28.1 211 105-328 6-226 (228)
144 PRK14256 phosphate ABC transpo 100.0 1.5E-42 3.1E-47 344.5 29.7 223 105-336 4-235 (252)
145 TIGR03873 F420-0_ABC_ATP propo 100.0 6.8E-43 1.5E-47 347.7 27.0 215 106-335 2-224 (256)
146 PRK10744 pstB phosphate transp 100.0 1.3E-42 2.9E-47 346.5 28.8 219 104-336 12-243 (260)
147 TIGR01277 thiQ thiamine ABC tr 100.0 9.4E-43 2E-47 337.4 26.8 208 106-331 1-212 (213)
148 PRK13645 cbiO cobalt transport 100.0 8.7E-43 1.9E-47 353.1 27.3 220 105-336 6-239 (289)
149 PRK14241 phosphate transporter 100.0 1.4E-42 2.9E-47 346.0 28.2 219 105-336 4-241 (258)
150 PRK14274 phosphate ABC transpo 100.0 1.4E-42 3E-47 346.1 28.2 223 104-336 11-242 (259)
151 PRK13648 cbiO cobalt transport 100.0 2.2E-42 4.7E-47 346.7 29.5 218 104-336 6-230 (269)
152 PRK11144 modC molybdate transp 100.0 8.8E-43 1.9E-47 362.2 27.6 207 106-337 2-218 (352)
153 PRK13632 cbiO cobalt transport 100.0 1.5E-42 3.3E-47 348.2 28.2 218 104-336 6-230 (271)
154 cd03300 ABC_PotA_N PotA is an 100.0 1.5E-42 3.2E-47 340.4 27.4 215 106-336 1-219 (232)
155 PRK13640 cbiO cobalt transport 100.0 1.5E-42 3.3E-47 350.1 28.3 222 104-337 4-232 (282)
156 PRK14245 phosphate ABC transpo 100.0 2E-42 4.3E-47 343.1 28.6 222 104-336 2-233 (250)
157 PRK14239 phosphate transporter 100.0 2.2E-42 4.8E-47 342.9 28.5 222 105-336 5-235 (252)
158 TIGR00968 3a0106s01 sulfate AB 100.0 1.9E-42 4.1E-47 340.8 27.7 215 106-336 1-219 (237)
159 TIGR02142 modC_ABC molybdenum 100.0 1E-42 2.2E-47 362.1 27.0 208 110-337 4-221 (354)
160 PRK11701 phnK phosphonate C-P 100.0 1.9E-42 4.1E-47 344.9 27.9 217 105-336 6-240 (258)
161 PRK14270 phosphate ABC transpo 100.0 2.7E-42 5.9E-47 342.3 28.8 219 104-336 3-234 (251)
162 PRK14235 phosphate transporter 100.0 2.4E-42 5.3E-47 346.0 28.5 223 104-336 18-250 (267)
163 PRK14269 phosphate ABC transpo 100.0 2.4E-42 5.3E-47 341.8 28.0 222 105-336 2-229 (246)
164 PRK13633 cobalt transporter AT 100.0 2.1E-42 4.5E-47 348.8 28.0 220 105-337 4-233 (280)
165 cd03299 ABC_ModC_like Archeal 100.0 2.7E-42 5.8E-47 339.3 28.0 214 106-336 1-218 (235)
166 PRK14240 phosphate transporter 100.0 3.5E-42 7.7E-47 341.2 28.7 222 105-336 3-233 (250)
167 PRK14249 phosphate ABC transpo 100.0 3.8E-42 8.1E-47 341.3 28.9 222 105-336 4-234 (251)
168 PRK14248 phosphate ABC transpo 100.0 3.7E-42 8E-47 344.8 28.9 219 104-336 20-251 (268)
169 PRK14262 phosphate ABC transpo 100.0 4.2E-42 9.1E-47 340.7 28.4 222 105-336 3-233 (250)
170 PRK14237 phosphate transporter 100.0 5.5E-42 1.2E-46 343.4 29.4 223 104-336 19-250 (267)
171 cd03233 ABC_PDR_domain1 The pl 100.0 1.7E-42 3.7E-47 333.2 24.7 195 105-330 3-202 (202)
172 TIGR01184 ntrCD nitrate transp 100.0 1.2E-42 2.6E-47 340.7 23.8 199 126-334 1-201 (230)
173 PRK14272 phosphate ABC transpo 100.0 5E-42 1.1E-46 340.4 28.3 219 105-336 4-235 (252)
174 COG4559 ABC-type hemin transpo 100.0 7.1E-43 1.5E-47 326.8 20.7 217 106-337 2-230 (259)
175 PRK14253 phosphate ABC transpo 100.0 4.5E-42 9.8E-47 340.2 27.5 221 105-335 3-231 (249)
176 cd03267 ABC_NatA_like Similar 100.0 2.6E-42 5.5E-47 339.7 25.3 198 122-330 33-236 (236)
177 cd03297 ABC_ModC_molybdenum_tr 100.0 2.9E-42 6.3E-47 334.0 25.3 200 110-330 5-214 (214)
178 PRK13642 cbiO cobalt transport 100.0 5E-42 1.1E-46 345.5 28.0 218 105-336 4-228 (277)
179 PRK13547 hmuV hemin importer A 100.0 3.4E-42 7.4E-47 345.7 26.3 218 106-335 2-242 (272)
180 PRK14255 phosphate ABC transpo 100.0 1.1E-41 2.3E-46 338.1 29.0 219 104-336 4-235 (252)
181 PRK14236 phosphate transporter 100.0 1.1E-41 2.3E-46 342.3 29.1 223 104-336 24-255 (272)
182 PRK14251 phosphate ABC transpo 100.0 9.4E-42 2E-46 338.4 28.4 218 105-336 4-234 (251)
183 PRK14258 phosphate ABC transpo 100.0 1.1E-41 2.3E-46 340.2 28.9 224 105-337 7-245 (261)
184 PRK14259 phosphate ABC transpo 100.0 4.9E-42 1.1E-46 344.2 26.4 222 104-337 12-253 (269)
185 PRK14260 phosphate ABC transpo 100.0 6.9E-42 1.5E-46 341.2 27.3 222 105-336 7-242 (259)
186 PRK14261 phosphate ABC transpo 100.0 1.3E-41 2.8E-46 337.9 28.7 222 105-336 6-236 (253)
187 PRK14275 phosphate ABC transpo 100.0 1.1E-41 2.4E-46 344.5 28.7 220 103-336 37-269 (286)
188 COG4181 Predicted ABC-type tra 100.0 5.7E-43 1.2E-47 317.3 17.1 211 105-328 6-226 (228)
189 PRK14271 phosphate ABC transpo 100.0 1.4E-41 3.1E-46 342.1 29.1 223 104-336 20-250 (276)
190 TIGR02323 CP_lyasePhnK phospho 100.0 1.1E-41 2.4E-46 338.3 27.8 217 105-336 3-237 (253)
191 PRK10261 glutathione transport 100.0 8.8E-42 1.9E-46 379.2 30.1 223 104-336 312-552 (623)
192 PRK14244 phosphate ABC transpo 100.0 9.8E-42 2.1E-46 338.3 27.2 222 105-336 5-236 (251)
193 COG4525 TauB ABC-type taurine 100.0 2.6E-42 5.7E-47 319.0 21.4 216 105-334 3-221 (259)
194 PRK13549 xylose transporter AT 100.0 3.2E-42 7E-47 374.6 25.9 218 105-335 5-230 (506)
195 PRK10762 D-ribose transporter 100.0 3.1E-42 6.7E-47 374.3 25.7 216 105-335 4-228 (501)
196 PRK10418 nikD nickel transport 100.0 1.4E-41 3.1E-46 337.9 28.3 216 105-336 4-229 (254)
197 TIGR02982 heterocyst_DevA ABC 100.0 7.6E-42 1.6E-46 332.6 25.4 209 106-326 2-219 (220)
198 COG4598 HisP ABC-type histidin 100.0 2.9E-43 6.3E-48 321.4 14.0 218 104-336 5-240 (256)
199 PRK14238 phosphate transporter 100.0 1.9E-41 4.1E-46 340.3 28.4 219 104-336 23-254 (271)
200 PRK15439 autoinducer 2 ABC tra 100.0 7.1E-42 1.5E-46 372.1 26.9 211 105-335 11-227 (510)
201 PRK10419 nikE nickel transport 100.0 1.9E-41 4.1E-46 339.7 27.7 222 105-336 3-240 (268)
202 PRK14257 phosphate ABC transpo 100.0 2.7E-41 5.9E-46 347.6 29.4 226 104-337 79-313 (329)
203 PRK14254 phosphate ABC transpo 100.0 3.1E-41 6.6E-46 341.1 29.2 218 103-336 37-268 (285)
204 TIGR02770 nickel_nikD nickel i 100.0 1.1E-41 2.3E-46 333.9 25.0 201 125-336 1-214 (230)
205 TIGR03608 L_ocin_972_ABC putat 100.0 8E-42 1.7E-46 328.6 23.5 197 108-321 1-206 (206)
206 PRK09700 D-allose transporter 100.0 7E-42 1.5E-46 372.3 26.0 216 105-335 5-232 (510)
207 CHL00131 ycf16 sulfate ABC tra 100.0 4.4E-41 9.5E-46 333.7 28.4 217 104-334 6-238 (252)
208 cd03252 ABCC_Hemolysin The ABC 100.0 1.8E-41 3.8E-46 333.5 25.3 215 106-337 1-225 (237)
209 PRK10261 glutathione transport 100.0 1.5E-41 3.3E-46 377.3 27.3 222 104-336 11-257 (623)
210 COG2274 SunT ABC-type bacterio 100.0 6.2E-42 1.4E-46 380.0 24.0 218 104-338 470-697 (709)
211 PRK14263 phosphate ABC transpo 100.0 6.7E-41 1.5E-45 334.5 28.6 221 104-336 7-244 (261)
212 PRK14246 phosphate ABC transpo 100.0 2.5E-41 5.5E-46 336.9 25.4 217 104-336 9-240 (257)
213 PRK14266 phosphate ABC transpo 100.0 8.7E-41 1.9E-45 331.3 28.6 222 105-336 3-233 (250)
214 PRK14265 phosphate ABC transpo 100.0 5.6E-41 1.2E-45 337.4 27.5 222 103-336 18-257 (274)
215 PRK15056 manganese/iron transp 100.0 3.2E-41 7E-46 338.8 25.7 216 105-335 6-228 (272)
216 cd03245 ABCC_bacteriocin_expor 100.0 2.5E-41 5.4E-46 328.6 24.0 209 105-330 2-220 (220)
217 PRK14243 phosphate transporter 100.0 6.8E-41 1.5E-45 335.0 27.4 221 104-336 9-247 (264)
218 COG4988 CydD ABC-type transpor 100.0 1.8E-41 4E-46 358.7 23.8 216 103-337 318-543 (559)
219 PRK03695 vitamin B12-transport 100.0 3.5E-41 7.6E-46 334.1 24.0 198 125-335 11-220 (248)
220 cd03254 ABCC_Glucan_exporter_l 100.0 3.5E-41 7.6E-46 329.5 23.5 214 105-336 2-225 (229)
221 TIGR03269 met_CoM_red_A2 methy 100.0 4.2E-41 9E-46 367.0 26.8 222 104-337 278-517 (520)
222 TIGR02633 xylG D-xylose ABC tr 100.0 3.3E-41 7.1E-46 366.2 25.8 216 106-334 2-227 (500)
223 PRK13538 cytochrome c biogenes 100.0 8.8E-41 1.9E-45 321.6 25.8 197 106-321 2-202 (204)
224 PRK14252 phosphate ABC transpo 100.0 1.5E-40 3.2E-45 332.7 28.3 219 104-336 15-248 (265)
225 PRK11174 cysteine/glutathione 100.0 3.7E-41 8E-46 372.5 26.4 215 104-337 348-572 (588)
226 PRK10982 galactose/methyl gala 100.0 2.7E-41 5.9E-46 366.0 24.8 213 108-335 1-221 (491)
227 cd03213 ABCG_EPDR ABCG transpo 100.0 9.1E-41 2E-45 319.2 25.3 188 104-330 2-194 (194)
228 PRK10247 putative ABC transpor 100.0 6.3E-41 1.4E-45 327.5 24.7 207 104-330 6-220 (225)
229 PRK15134 microcin C ABC transp 100.0 8.6E-41 1.9E-45 365.3 28.5 224 105-336 5-245 (529)
230 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2E-41 4.4E-46 333.3 21.3 216 106-337 1-226 (238)
231 PRK15134 microcin C ABC transp 100.0 6.1E-41 1.3E-45 366.4 27.2 222 104-336 274-514 (529)
232 PRK11288 araG L-arabinose tran 100.0 5.3E-41 1.2E-45 364.6 26.4 213 105-332 4-224 (501)
233 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4E-41 8.6E-46 328.8 22.8 202 106-330 23-224 (224)
234 cd03232 ABC_PDR_domain2 The pl 100.0 9.5E-41 2E-45 318.5 24.5 187 104-330 2-192 (192)
235 PRK13543 cytochrome c biogenes 100.0 1.3E-40 2.7E-45 322.9 25.7 201 104-323 10-212 (214)
236 cd03251 ABCC_MsbA MsbA is an e 100.0 3.1E-41 6.8E-46 331.0 21.7 215 106-337 1-225 (234)
237 COG4161 ArtP ABC-type arginine 100.0 1.7E-41 3.7E-46 304.9 17.8 215 104-333 1-226 (242)
238 PRK13546 teichoic acids export 100.0 3.8E-40 8.3E-45 329.5 29.6 215 104-337 3-232 (264)
239 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 7.9E-41 1.7E-45 376.1 27.4 214 104-337 450-673 (686)
240 PRK09544 znuC high-affinity zi 100.0 1.5E-40 3.2E-45 330.3 26.0 202 105-336 4-208 (251)
241 TIGR03269 met_CoM_red_A2 methy 100.0 1E-40 2.2E-45 363.9 27.1 218 106-339 1-260 (520)
242 cd03231 ABC_CcmA_heme_exporter 100.0 9.1E-41 2E-45 320.8 23.2 194 106-321 1-198 (201)
243 KOG0055 Multidrug/pheromone ex 100.0 2.4E-40 5.2E-45 373.9 30.4 219 103-337 348-576 (1228)
244 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.1E-40 2.3E-45 335.1 24.4 214 105-337 2-225 (275)
245 cd03253 ABCC_ATM1_transporter 100.0 1.7E-40 3.6E-45 326.2 25.3 213 106-336 1-223 (236)
246 COG1129 MglA ABC-type sugar tr 100.0 8.7E-41 1.9E-45 352.6 24.4 214 104-332 7-229 (500)
247 PRK14264 phosphate ABC transpo 100.0 5.8E-40 1.3E-44 334.9 29.3 223 104-336 44-288 (305)
248 PRK11176 lipid transporter ATP 100.0 8.5E-41 1.8E-45 369.2 25.0 218 104-337 340-567 (582)
249 PRK10790 putative multidrug tr 100.0 1.4E-40 3E-45 368.3 26.5 215 104-337 339-563 (592)
250 PRK09580 sufC cysteine desulfu 100.0 5.1E-40 1.1E-44 325.1 27.8 216 106-335 2-233 (248)
251 TIGR01257 rim_protein retinal- 100.0 1.7E-40 3.8E-45 397.2 29.1 223 104-340 1936-2162(2272)
252 PRK13549 xylose transporter AT 100.0 7.9E-41 1.7E-45 363.7 23.6 220 104-335 258-492 (506)
253 TIGR02324 CP_lyasePhnL phospho 100.0 2.8E-40 6.1E-45 322.2 24.9 206 106-322 2-223 (224)
254 KOG0058 Peptide exporter, ABC 100.0 5.5E-41 1.2E-45 361.2 21.7 219 103-337 463-691 (716)
255 cd03230 ABC_DR_subfamily_A Thi 100.0 2E-40 4.4E-45 311.1 22.9 169 106-326 1-173 (173)
256 cd03244 ABCC_MRP_domain2 Domai 100.0 1.6E-40 3.4E-45 323.3 22.8 209 105-331 2-220 (221)
257 PRK13539 cytochrome c biogenes 100.0 3.9E-40 8.5E-45 317.8 25.2 197 105-323 2-200 (207)
258 TIGR01189 ccmA heme ABC export 100.0 3.2E-40 7E-45 316.1 24.2 193 106-320 1-197 (198)
259 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.3E-40 2.9E-45 375.7 24.9 215 104-337 476-700 (710)
260 COG4148 ModC ABC-type molybdat 100.0 2.6E-41 5.5E-46 327.5 16.1 193 128-337 16-218 (352)
261 cd03217 ABC_FeS_Assembly ABC-t 100.0 5.9E-40 1.3E-44 315.0 24.3 186 106-339 1-195 (200)
262 COG4604 CeuD ABC-type enteroch 100.0 2E-41 4.4E-46 313.6 13.0 217 106-337 2-225 (252)
263 TIGR03375 type_I_sec_LssB type 100.0 4.5E-40 9.7E-45 370.5 26.2 218 104-338 462-689 (694)
264 PRK10938 putative molybdenum t 100.0 3.6E-40 7.9E-45 357.1 24.5 208 105-336 3-223 (490)
265 TIGR01257 rim_protein retinal- 100.0 8.5E-40 1.8E-44 391.3 29.7 222 104-340 927-1152(2272)
266 PRK09700 D-allose transporter 100.0 2.5E-40 5.3E-45 360.2 23.0 212 104-332 264-493 (510)
267 cd03215 ABC_Carb_Monos_II This 100.0 6.4E-40 1.4E-44 310.2 22.9 170 105-326 4-182 (182)
268 PRK11160 cysteine/glutathione 100.0 5.9E-40 1.3E-44 361.9 26.1 216 104-337 337-562 (574)
269 PRK13545 tagH teichoic acids e 100.0 2.1E-39 4.6E-44 345.4 29.2 215 104-339 20-234 (549)
270 cd03229 ABC_Class3 This class 100.0 5.9E-40 1.3E-44 309.3 22.1 170 106-325 1-178 (178)
271 TIGR00958 3a01208 Conjugate Tr 100.0 4.4E-40 9.5E-45 371.0 25.1 216 104-337 477-702 (711)
272 KOG0057 Mitochondrial Fe/S clu 100.0 4.6E-40 1E-44 343.5 23.2 216 103-337 349-574 (591)
273 TIGR01193 bacteriocin_ABC ABC- 100.0 4.3E-40 9.3E-45 371.4 24.6 216 104-337 472-697 (708)
274 COG1132 MdlB ABC-type multidru 100.0 5.3E-40 1.2E-44 361.9 24.4 216 104-337 327-552 (567)
275 TIGR03771 anch_rpt_ABC anchore 100.0 7E-40 1.5E-44 319.7 22.1 195 131-336 1-200 (223)
276 PRK13657 cyclic beta-1,2-gluca 100.0 1.1E-39 2.5E-44 360.7 26.2 215 105-337 334-558 (588)
277 cd03248 ABCC_TAP TAP, the Tran 100.0 3.8E-40 8.3E-45 321.7 19.5 207 104-326 10-226 (226)
278 PRK13540 cytochrome c biogenes 100.0 1.7E-39 3.8E-44 311.6 23.5 192 106-319 2-197 (200)
279 cd03250 ABCC_MRP_domain1 Domai 100.0 1.5E-39 3.3E-44 312.8 22.7 198 106-325 1-204 (204)
280 TIGR01842 type_I_sec_PrtD type 100.0 1.5E-39 3.3E-44 356.6 25.7 217 104-336 315-541 (544)
281 COG4987 CydC ABC-type transpor 100.0 2.9E-40 6.4E-45 344.8 19.0 216 105-337 336-561 (573)
282 TIGR02633 xylG D-xylose ABC tr 100.0 8.7E-40 1.9E-44 355.0 23.5 218 104-333 256-488 (500)
283 cd03288 ABCC_SUR2 The SUR doma 100.0 4.1E-39 8.9E-44 320.9 26.4 216 104-337 18-243 (257)
284 COG4608 AppF ABC-type oligopep 100.0 1.2E-39 2.7E-44 318.4 22.0 191 104-337 3-199 (268)
285 PRK10535 macrolide transporter 100.0 1.8E-38 3.8E-43 354.2 34.1 218 105-335 4-230 (648)
286 cd03246 ABCC_Protease_Secretio 100.0 1.5E-39 3.2E-44 305.2 21.5 168 106-326 1-173 (173)
287 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.2E-39 4.7E-44 312.4 22.8 198 104-332 5-207 (207)
288 COG4172 ABC-type uncharacteriz 100.0 1.6E-39 3.5E-44 328.1 22.5 230 103-337 4-247 (534)
289 TIGR02203 MsbA_lipidA lipid A 100.0 1.7E-39 3.7E-44 358.0 24.7 218 104-337 329-556 (571)
290 TIGR01166 cbiO cobalt transpor 100.0 2E-39 4.4E-44 308.5 21.7 174 123-307 5-187 (190)
291 cd03247 ABCC_cytochrome_bd The 100.0 1.6E-39 3.5E-44 306.2 20.7 174 106-330 1-178 (178)
292 PRK11288 araG L-arabinose tran 100.0 1.1E-39 2.4E-44 354.3 21.9 211 105-334 257-482 (501)
293 PRK10762 D-ribose transporter 100.0 1.8E-39 3.8E-44 352.7 23.5 212 104-335 256-482 (501)
294 cd03214 ABC_Iron-Siderophores_ 100.0 2.4E-39 5.2E-44 305.7 20.5 174 107-330 1-180 (180)
295 TIGR02204 MsbA_rel ABC transpo 100.0 5.4E-39 1.2E-43 354.4 25.6 217 104-336 336-562 (576)
296 TIGR01846 type_I_sec_HlyB type 100.0 5E-39 1.1E-43 362.0 25.6 217 104-337 454-680 (694)
297 PRK10789 putative multidrug tr 100.0 7.4E-39 1.6E-43 352.9 25.5 216 105-337 313-538 (569)
298 TIGR01187 potA spermidine/putr 100.0 6.6E-39 1.4E-43 329.8 23.2 186 141-337 1-190 (325)
299 COG3845 ABC-type uncharacteriz 100.0 5.7E-39 1.2E-43 332.8 21.7 213 104-331 3-223 (501)
300 PRK15439 autoinducer 2 ABC tra 100.0 5.7E-39 1.2E-43 349.4 22.9 211 104-334 267-489 (510)
301 cd03290 ABCC_SUR1_N The SUR do 100.0 1.8E-38 3.8E-43 308.4 23.5 201 107-325 2-218 (218)
302 TIGR01192 chvA glucan exporter 100.0 2E-38 4.4E-43 350.3 26.5 215 105-337 334-558 (585)
303 COG0396 sufC Cysteine desulfur 100.0 4.8E-38 1E-42 298.3 24.3 230 104-346 2-242 (251)
304 PTZ00265 multidrug resistance 100.0 1E-38 2.3E-43 380.4 24.3 222 104-337 1164-1452(1466)
305 cd03291 ABCC_CFTR1 The CFTR su 100.0 9.9E-38 2.1E-42 314.7 27.6 205 103-337 37-247 (282)
306 PRK15064 ABC transporter ATP-b 100.0 4.7E-38 1E-42 343.8 27.0 207 106-336 2-241 (530)
307 cd03216 ABC_Carb_Monos_I This 100.0 4.4E-38 9.4E-43 292.6 22.3 156 106-328 1-162 (163)
308 cd03228 ABCC_MRP_Like The MRP 100.0 2.4E-38 5.3E-43 296.4 20.6 166 106-325 1-171 (171)
309 cd03223 ABCD_peroxisomal_ALDP 100.0 3.2E-38 6.9E-43 294.4 21.0 164 106-325 1-164 (166)
310 PRK13541 cytochrome c biogenes 100.0 6.1E-38 1.3E-42 299.7 23.1 190 106-318 2-192 (195)
311 cd03237 ABC_RNaseL_inhibitor_d 100.0 6.8E-38 1.5E-42 310.2 23.8 181 125-327 9-195 (246)
312 PRK15177 Vi polysaccharide exp 100.0 8.2E-38 1.8E-42 303.2 23.5 194 125-341 2-196 (213)
313 TIGR01194 cyc_pep_trnsptr cycl 100.0 4.4E-38 9.5E-43 345.7 24.4 210 104-329 336-551 (555)
314 PRK11819 putative ABC transpor 100.0 9.4E-38 2E-42 343.1 26.4 208 104-335 5-248 (556)
315 PRK15064 ABC transporter ATP-b 100.0 8.7E-38 1.9E-42 341.7 25.8 203 104-336 318-524 (530)
316 COG4618 ArpD ABC-type protease 100.0 3.9E-38 8.4E-43 326.3 21.2 222 103-340 332-563 (580)
317 PRK10982 galactose/methyl gala 100.0 4.6E-38 1E-42 340.8 22.6 212 104-332 249-475 (491)
318 PRK10938 putative molybdenum t 100.0 5.1E-38 1.1E-42 340.4 22.8 213 104-331 259-486 (490)
319 TIGR02868 CydC thiol reductant 100.0 4.3E-38 9.2E-43 344.0 21.0 188 104-307 333-529 (529)
320 KOG0055 Multidrug/pheromone ex 100.0 4E-38 8.7E-43 355.9 21.0 218 104-337 986-1213(1228)
321 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.7E-37 6E-42 339.2 26.1 209 104-336 3-247 (552)
322 TIGR02857 CydD thiol reductant 100.0 1.2E-37 2.6E-42 340.5 22.8 200 105-321 320-529 (529)
323 COG4619 ABC-type uncharacteriz 100.0 2.5E-38 5.5E-43 286.2 14.3 192 121-326 14-212 (223)
324 PLN03130 ABC transporter C fam 100.0 1.6E-37 3.6E-42 373.3 25.6 216 104-337 1236-1461(1622)
325 PLN03232 ABC transporter C fam 100.0 1.5E-37 3.2E-42 373.0 24.7 215 105-337 1234-1458(1495)
326 COG1119 ModF ABC-type molybden 100.0 8.5E-38 1.9E-42 299.8 17.0 214 103-331 29-256 (257)
327 COG4167 SapF ABC-type antimicr 100.0 1.3E-37 2.8E-42 285.1 16.6 223 105-337 4-239 (267)
328 PRK11819 putative ABC transpor 100.0 9.5E-37 2.1E-41 335.1 26.9 204 104-334 323-530 (556)
329 COG4674 Uncharacterized ABC-ty 100.0 1.5E-37 3.2E-42 287.6 17.1 217 104-336 4-234 (249)
330 PRK10522 multidrug transporter 100.0 7.7E-37 1.7E-41 335.4 25.1 204 105-330 322-531 (547)
331 PRK13409 putative ATPase RIL; 100.0 1.2E-36 2.6E-41 334.9 26.0 198 104-332 339-537 (590)
332 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.4E-36 3.1E-41 333.5 26.6 203 104-333 321-527 (552)
333 PTZ00243 ABC transporter; Prov 100.0 1E-36 2.2E-41 366.0 27.1 216 104-337 1307-1533(1560)
334 COG4586 ABC-type uncharacteriz 100.0 2.6E-37 5.6E-42 299.1 17.1 205 123-339 37-248 (325)
335 TIGR00957 MRP_assoc_pro multi 100.0 1.1E-36 2.3E-41 366.2 26.4 216 104-337 1283-1508(1522)
336 PTZ00265 multidrug resistance 100.0 8.7E-37 1.9E-41 364.0 24.0 212 105-324 382-655 (1466)
337 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.6E-36 3.4E-41 301.9 19.6 198 110-330 5-220 (255)
338 TIGR01271 CFTR_protein cystic 100.0 4.4E-36 9.5E-41 359.9 26.5 215 104-337 1216-1440(1490)
339 PRK10636 putative ABC transpor 100.0 7E-36 1.5E-40 332.6 25.4 203 103-336 310-516 (638)
340 PRK11147 ABC transporter ATPas 100.0 8.7E-36 1.9E-40 332.1 25.4 205 103-334 317-525 (635)
341 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.5E-35 3.2E-40 270.2 20.5 144 106-325 1-144 (144)
342 PLN03073 ABC transporter F fam 100.0 3.5E-35 7.5E-40 329.1 26.8 204 104-335 507-712 (718)
343 COG1101 PhnK ABC-type uncharac 100.0 1.1E-35 2.5E-40 279.0 17.7 216 106-331 2-232 (263)
344 TIGR00954 3a01203 Peroxysomal 100.0 2.2E-35 4.8E-40 329.7 22.8 201 104-323 450-653 (659)
345 PRK10636 putative ABC transpor 100.0 7.3E-35 1.6E-39 324.4 26.3 204 106-334 2-233 (638)
346 COG1134 TagH ABC-type polysacc 100.0 1.7E-34 3.7E-39 277.4 24.6 219 105-341 3-240 (249)
347 cd03238 ABC_UvrA The excision 100.0 3.4E-35 7.3E-40 276.2 19.1 157 122-326 7-166 (176)
348 cd03222 ABC_RNaseL_inhibitor T 100.0 6.2E-35 1.4E-39 274.6 20.1 153 109-333 4-159 (177)
349 PLN03232 ABC transporter C fam 100.0 6.4E-35 1.4E-39 350.4 24.4 209 105-337 614-828 (1495)
350 PLN03130 ABC transporter C fam 100.0 8.7E-35 1.9E-39 349.9 25.2 208 105-337 614-828 (1622)
351 PRK11147 ABC transporter ATPas 100.0 2.2E-34 4.7E-39 320.9 26.4 205 105-335 3-241 (635)
352 KOG0059 Lipid exporter ABCA1 a 100.0 3.2E-35 6.9E-40 337.1 20.0 223 104-341 563-791 (885)
353 COG4107 PhnK ABC-type phosphon 100.0 3.9E-35 8.4E-40 266.9 14.7 216 104-337 5-241 (258)
354 KOG0056 Heavy metal exporter H 100.0 2.3E-35 5E-40 302.8 14.2 216 102-337 534-761 (790)
355 COG4136 ABC-type uncharacteriz 100.0 7.1E-35 1.5E-39 259.4 14.8 191 105-308 2-196 (213)
356 TIGR00957 MRP_assoc_pro multi 100.0 5E-34 1.1E-38 343.1 25.5 208 105-337 636-850 (1522)
357 PRK13409 putative ATPase RIL; 100.0 4.1E-34 8.8E-39 314.9 19.4 189 110-324 78-287 (590)
358 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.2E-33 4.7E-38 259.0 20.9 151 108-325 2-157 (157)
359 TIGR01271 CFTR_protein cystic 100.0 4.1E-33 8.8E-38 334.5 24.4 203 105-337 428-636 (1490)
360 COG4133 CcmA ABC-type transpor 100.0 1.4E-33 3.1E-38 260.3 15.0 186 106-309 3-192 (209)
361 COG5265 ATM1 ABC-type transpor 100.0 1.3E-33 2.8E-38 287.0 15.3 217 103-337 260-486 (497)
362 COG0488 Uup ATPase components 100.0 2.5E-32 5.4E-37 294.7 20.5 201 105-330 3-232 (530)
363 PTZ00243 ABC transporter; Prov 100.0 5.6E-32 1.2E-36 325.1 24.5 194 122-337 672-870 (1560)
364 cd03270 ABC_UvrA_I The excisio 100.0 7.9E-32 1.7E-36 263.6 20.5 189 122-330 7-226 (226)
365 PLN03073 ABC transporter F fam 100.0 2.6E-32 5.7E-37 305.9 19.5 213 103-334 175-428 (718)
366 KOG0054 Multidrug resistance-a 100.0 9.1E-31 2E-35 302.5 23.1 217 103-337 1136-1362(1381)
367 COG4778 PhnL ABC-type phosphon 100.0 3.3E-31 7.3E-36 240.4 13.1 210 104-323 3-227 (235)
368 KOG0054 Multidrug resistance-a 100.0 3.2E-30 6.9E-35 298.0 22.9 211 103-337 516-731 (1381)
369 cd03271 ABC_UvrA_II The excisi 100.0 6.2E-30 1.4E-34 254.4 20.8 194 124-332 9-261 (261)
370 PF00005 ABC_tran: ABC transpo 100.0 7.6E-31 1.7E-35 235.7 12.3 132 126-276 1-137 (137)
371 COG0488 Uup ATPase components 100.0 5.8E-29 1.2E-33 268.6 22.3 203 102-335 318-523 (530)
372 cd03278 ABC_SMC_barmotin Barmo 100.0 1.3E-29 2.9E-34 242.8 14.1 165 127-323 14-190 (197)
373 COG1129 MglA ABC-type sugar tr 100.0 8.9E-29 1.9E-33 261.6 21.6 211 103-332 261-485 (500)
374 cd03272 ABC_SMC3_euk Eukaryoti 100.0 1.3E-28 2.9E-33 242.8 13.3 184 122-322 14-234 (243)
375 COG4138 BtuD ABC-type cobalami 100.0 5.5E-29 1.2E-33 227.0 6.1 206 105-336 3-220 (248)
376 COG4178 ABC-type uncharacteriz 99.9 6.7E-27 1.4E-31 251.8 19.5 198 103-322 390-587 (604)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.9 7.2E-29 1.5E-33 240.4 2.8 186 105-323 5-204 (212)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.1E-27 2.5E-32 237.8 11.4 175 136-322 25-242 (251)
379 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.6E-26 3.4E-31 224.2 16.9 190 105-326 5-211 (213)
380 COG3845 ABC-type uncharacteriz 99.9 1.5E-25 3.3E-30 233.0 22.0 220 102-334 254-489 (501)
381 PRK00635 excinuclease ABC subu 99.9 2.3E-25 4.9E-30 264.0 24.2 214 105-337 600-906 (1809)
382 cd03240 ABC_Rad50 The catalyti 99.9 4.4E-26 9.5E-31 219.7 13.9 163 129-323 16-197 (204)
383 PRK00349 uvrA excinuclease ABC 99.9 6.9E-25 1.5E-29 250.2 22.3 126 197-337 792-927 (943)
384 COG4615 PvdE ABC-type sideroph 99.9 5.2E-26 1.1E-30 229.7 9.0 203 105-330 322-530 (546)
385 COG4170 SapD ABC-type antimicr 99.9 2.7E-25 5.8E-30 208.1 12.6 228 105-337 3-248 (330)
386 TIGR00630 uvra excinuclease AB 99.9 4E-24 8.7E-29 243.6 22.8 125 196-335 789-923 (924)
387 COG1245 Predicted ATPase, RNas 99.9 1.4E-23 2.9E-28 215.6 17.6 189 104-322 341-530 (591)
388 KOG0927 Predicted transporter 99.9 8.4E-24 1.8E-28 221.2 15.4 211 104-334 74-306 (614)
389 KOG0927 Predicted transporter 99.9 2.5E-24 5.4E-29 225.1 10.5 202 102-332 386-591 (614)
390 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.2E-23 2.6E-28 201.8 14.4 168 126-325 12-192 (198)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 3.9E-24 8.5E-29 212.0 9.8 178 137-323 23-233 (247)
392 KOG0060 Long-chain acyl-CoA tr 99.9 2.9E-22 6.2E-27 211.1 18.7 205 103-323 431-641 (659)
393 KOG2355 Predicted ABC-type tra 99.9 1.7E-21 3.8E-26 182.1 16.4 209 103-335 11-235 (291)
394 KOG0062 ATPase component of AB 99.9 2.1E-22 4.5E-27 209.7 9.9 203 103-335 78-283 (582)
395 cd03280 ABC_MutS2 MutS2 homolo 99.9 1.5E-21 3.3E-26 187.5 12.0 146 126-330 17-172 (200)
396 KOG0062 ATPase component of AB 99.9 5.6E-21 1.2E-25 199.2 14.8 199 103-328 360-559 (582)
397 COG1245 Predicted ATPase, RNas 99.8 2.1E-21 4.6E-26 199.6 10.5 169 134-323 98-288 (591)
398 KOG0066 eIF2-interacting prote 99.8 4.6E-21 1E-25 195.6 12.9 192 102-323 583-776 (807)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.8 6.8E-21 1.5E-25 184.8 12.9 82 244-326 123-212 (213)
400 cd03239 ABC_SMC_head The struc 99.8 2.1E-19 4.5E-24 169.6 16.0 74 248-323 95-172 (178)
401 COG2401 ABC-type ATPase fused 99.8 1.7E-19 3.6E-24 183.7 15.3 184 123-327 396-588 (593)
402 KOG0064 Peroxisomal long-chain 99.8 5.7E-20 1.2E-24 191.5 10.5 184 104-308 480-670 (728)
403 cd03283 ABC_MutS-like MutS-lik 99.8 2E-19 4.3E-24 172.7 10.4 146 124-321 15-163 (199)
404 PRK00635 excinuclease ABC subu 99.8 2.4E-18 5.2E-23 204.8 21.1 127 196-337 1660-1796(1809)
405 cd03285 ABC_MSH2_euk MutS2 hom 99.8 6.7E-19 1.5E-23 171.8 10.9 152 123-331 17-175 (222)
406 cd03227 ABC_Class2 ABC-type Cl 99.8 1.4E-18 3.1E-23 161.3 12.4 75 247-323 77-155 (162)
407 cd03241 ABC_RecN RecN ATPase i 99.8 1.3E-18 2.9E-23 175.2 13.0 76 247-325 170-249 (276)
408 COG0178 UvrA Excinuclease ATPa 99.8 7.3E-18 1.6E-22 183.8 17.6 128 196-337 783-919 (935)
409 PRK00349 uvrA excinuclease ABC 99.8 5.2E-18 1.1E-22 194.2 14.6 134 195-337 435-585 (943)
410 cd03243 ABC_MutS_homologs The 99.8 1.4E-18 3.1E-23 167.1 7.7 153 129-334 22-176 (202)
411 KOG0066 eIF2-interacting prote 99.7 2.1E-18 4.5E-23 176.3 8.5 207 103-329 262-490 (807)
412 TIGR00630 uvra excinuclease AB 99.7 1.1E-17 2.5E-22 191.0 15.3 133 195-336 433-582 (924)
413 cd03242 ABC_RecF RecF is a rec 99.7 1.7E-16 3.7E-21 159.4 16.3 77 245-326 181-269 (270)
414 cd03284 ABC_MutS1 MutS1 homolo 99.7 2.2E-16 4.8E-21 153.5 11.0 155 124-335 19-179 (216)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.7 3.4E-16 7.4E-21 150.8 11.7 135 123-307 16-151 (204)
416 KOG0063 RNAse L inhibitor, ABC 99.6 2.3E-15 5E-20 154.2 14.0 177 123-322 349-531 (592)
417 TIGR02858 spore_III_AA stage I 99.6 6.8E-15 1.5E-19 147.4 11.6 137 137-334 112-266 (270)
418 smart00534 MUTSac ATPase domai 99.5 2.6E-15 5.6E-20 142.6 3.8 77 247-328 61-141 (185)
419 PRK00064 recF recombination pr 99.5 2.4E-12 5.2E-17 134.6 20.4 79 244-326 270-359 (361)
420 cd03281 ABC_MSH5_euk MutS5 hom 99.5 4.3E-13 9.3E-18 130.2 12.3 118 137-307 30-154 (213)
421 KOG0063 RNAse L inhibitor, ABC 99.4 1.5E-13 3.2E-18 141.1 8.2 172 134-323 98-288 (592)
422 PF02463 SMC_N: RecF/RecN/SMC 99.4 8.1E-14 1.8E-18 135.4 5.9 73 247-322 136-212 (220)
423 TIGR01069 mutS2 MutS2 family p 99.4 2.9E-13 6.2E-18 153.4 10.8 129 129-308 314-446 (771)
424 cd00820 PEPCK_HprK Phosphoenol 99.4 1.1E-12 2.3E-17 113.0 7.0 72 123-206 2-78 (107)
425 PTZ00132 GTP-binding nuclear p 99.4 1.2E-12 2.6E-17 126.7 7.6 44 252-295 157-205 (215)
426 TIGR00634 recN DNA repair prot 99.3 2.3E-12 5E-17 142.3 9.8 77 246-325 439-519 (563)
427 cd03287 ABC_MSH3_euk MutS3 hom 99.3 3.8E-12 8.2E-17 124.2 9.4 132 123-307 18-154 (222)
428 PRK08533 flagellar accessory p 99.3 1.8E-11 3.8E-16 120.3 12.7 150 132-322 20-184 (230)
429 cd01124 KaiC KaiC is a circadi 99.3 1.3E-11 2.9E-16 116.2 11.1 79 244-322 68-163 (187)
430 TIGR00618 sbcc exonuclease Sbc 99.3 7.6E-12 1.7E-16 147.4 11.4 81 243-324 946-1036(1042)
431 PRK10869 recombination and rep 99.3 1E-11 2.2E-16 136.4 10.7 76 246-324 429-508 (553)
432 PHA02562 46 endonuclease subun 99.3 5.7E-12 1.2E-16 139.1 8.5 79 244-326 465-555 (562)
433 PRK00409 recombination and DNA 99.3 6.4E-12 1.4E-16 142.8 8.3 81 246-329 389-470 (782)
434 PRK07721 fliI flagellum-specif 99.3 2.9E-11 6.2E-16 128.8 12.4 171 122-334 145-340 (438)
435 cd01128 rho_factor Transcripti 99.2 6.7E-12 1.5E-16 124.4 4.9 75 246-326 128-211 (249)
436 cd03286 ABC_MSH6_euk MutS6 hom 99.2 4.9E-11 1.1E-15 116.1 10.7 139 123-314 17-159 (218)
437 PRK13695 putative NTPase; Prov 99.2 5.3E-12 1.2E-16 118.4 2.6 78 246-329 77-156 (174)
438 COG0178 UvrA Excinuclease ATPa 99.2 2.3E-10 5E-15 125.9 14.4 135 195-337 427-577 (935)
439 PF13304 AAA_21: AAA domain; P 99.2 3.7E-11 8.1E-16 115.9 6.2 62 246-307 235-299 (303)
440 PRK03918 chromosome segregatio 99.2 8.6E-11 1.9E-15 136.4 10.3 78 243-322 784-867 (880)
441 TIGR02788 VirB11 P-type DNA tr 99.2 1E-10 2.2E-15 119.8 9.5 141 129-336 137-280 (308)
442 PRK10246 exonuclease subunit S 99.1 2E-10 4.3E-15 135.2 11.2 80 243-323 945-1032(1047)
443 PRK06793 fliI flagellum-specif 99.1 2.2E-10 4.8E-15 121.3 10.4 169 106-332 131-306 (432)
444 cd01120 RecA-like_NTPases RecA 99.1 5.8E-10 1.3E-14 101.4 11.2 63 247-309 67-139 (165)
445 PRK13830 conjugal transfer pro 99.1 1.6E-09 3.5E-14 124.4 16.4 69 263-332 650-728 (818)
446 TIGR00606 rad50 rad50. This fa 99.1 5.4E-10 1.2E-14 134.5 11.7 109 196-315 1155-1277(1311)
447 PRK01156 chromosome segregatio 99.0 7E-10 1.5E-14 129.2 10.8 77 244-322 798-883 (895)
448 COG3910 Predicted ATPase [Gene 99.0 9.6E-09 2.1E-13 95.9 13.4 79 245-325 127-205 (233)
449 PRK06067 flagellar accessory p 99.0 1.8E-08 3.8E-13 99.1 15.7 161 126-323 14-187 (234)
450 TIGR02168 SMC_prok_B chromosom 99.0 9E-10 1.9E-14 131.0 7.6 76 244-322 1086-1165(1179)
451 TIGR02169 SMC_prok_A chromosom 98.9 3.2E-09 7E-14 126.5 8.4 77 244-323 1071-1151(1164)
452 cd01131 PilT Pilus retraction 98.8 1.3E-08 2.8E-13 97.7 10.1 57 257-322 66-122 (198)
453 PRK02224 chromosome segregatio 98.8 6.5E-09 1.4E-13 120.9 9.3 78 245-324 779-869 (880)
454 cd01125 repA Hexameric Replica 98.8 1.3E-08 2.8E-13 100.4 10.0 135 136-307 1-159 (239)
455 TIGR02655 circ_KaiC circadian 98.8 3E-09 6.4E-14 115.6 5.2 164 126-322 10-190 (484)
456 TIGR03238 dnd_assoc_3 dnd syst 98.8 3.9E-09 8.4E-14 112.0 5.3 52 123-178 19-70 (504)
457 PRK06995 flhF flagellar biosyn 98.7 3E-08 6.6E-13 106.6 9.2 151 124-306 244-401 (484)
458 PRK13891 conjugal transfer pro 98.7 2.6E-07 5.7E-12 106.8 17.5 55 258-313 680-735 (852)
459 smart00382 AAA ATPases associa 98.7 5.4E-07 1.2E-11 78.6 15.3 118 135-305 1-124 (148)
460 cd01130 VirB11-like_ATPase Typ 98.6 5.6E-08 1.2E-12 92.3 7.1 79 126-207 15-97 (186)
461 PRK07196 fliI flagellum-specif 98.6 4.7E-08 1E-12 103.8 6.1 169 122-329 142-333 (434)
462 TIGR00611 recf recF protein. A 98.6 8.2E-08 1.8E-12 100.7 7.2 60 246-308 274-342 (365)
463 TIGR01026 fliI_yscN ATPase Fli 98.6 3.1E-07 6.6E-12 98.2 11.0 171 122-334 150-345 (440)
464 TIGR01420 pilT_fam pilus retra 98.6 2.3E-07 5E-12 96.6 9.6 56 257-321 187-242 (343)
465 PRK14079 recF recombination pr 98.5 1.5E-07 3.3E-12 98.1 7.5 75 246-328 262-345 (349)
466 cd02023 UMPK Uridine monophosp 98.5 8.4E-08 1.8E-12 91.7 4.1 112 138-280 1-113 (198)
467 TIGR03881 KaiC_arch_4 KaiC dom 98.5 4.6E-08 1E-12 95.6 1.7 32 126-157 9-41 (229)
468 PRK05399 DNA mismatch repair p 98.5 3E-07 6.4E-12 106.2 8.6 67 247-317 666-738 (854)
469 COG0419 SbcC ATPase involved i 98.5 5.5E-07 1.2E-11 105.1 10.1 79 243-323 811-897 (908)
470 PRK06002 fliI flagellum-specif 98.4 6.5E-07 1.4E-11 95.3 9.1 82 103-192 137-230 (450)
471 PRK13898 type IV secretion sys 98.4 1.2E-05 2.6E-10 92.8 19.9 48 261-308 638-686 (800)
472 TIGR02680 conserved hypothetic 98.4 5.6E-07 1.2E-11 108.6 7.4 59 245-306 1245-1315(1353)
473 PRK13873 conjugal transfer ATP 98.3 1.2E-05 2.5E-10 93.1 17.5 47 262-308 632-679 (811)
474 TIGR00152 dephospho-CoA kinase 98.3 9.4E-07 2E-11 83.9 5.3 72 251-324 61-133 (188)
475 PLN03210 Resistant to P. syrin 98.3 2.8E-06 6.1E-11 101.7 10.4 44 129-174 200-243 (1153)
476 PRK09825 idnK D-gluconate kina 98.3 7E-07 1.5E-11 84.2 4.0 35 135-176 2-36 (176)
477 cd01122 GP4d_helicase GP4d_hel 98.2 3.1E-05 6.7E-10 77.6 15.5 36 124-159 18-53 (271)
478 PRK06315 type III secretion sy 98.2 4.3E-06 9.3E-11 89.2 8.1 107 122-232 151-277 (442)
479 TIGR02903 spore_lon_C ATP-depe 98.2 4.6E-06 1E-10 93.2 8.6 112 136-292 175-291 (615)
480 PF13555 AAA_29: P-loop contai 98.2 2.6E-06 5.7E-11 66.0 4.4 37 126-162 12-49 (62)
481 PF13558 SbcCD_C: Putative exo 98.1 6E-06 1.3E-10 69.2 6.7 47 246-292 31-90 (90)
482 TIGR02524 dot_icm_DotB Dot/Icm 98.1 1.1E-05 2.4E-10 84.4 9.2 72 134-205 132-207 (358)
483 PRK13764 ATPase; Provisional 98.1 2E-05 4.3E-10 87.1 11.1 64 262-332 321-400 (602)
484 PRK00454 engB GTP-binding prot 98.1 4.7E-05 1E-09 71.9 12.2 46 247-296 147-195 (196)
485 PRK08149 ATP synthase SpaL; Va 98.0 7.2E-06 1.6E-10 87.2 6.5 69 122-191 138-215 (428)
486 cd00009 AAA The AAA+ (ATPases 98.0 1.5E-05 3.3E-10 70.2 7.5 53 254-307 73-130 (151)
487 cd01876 YihA_EngB The YihA (En 98.0 5.2E-06 1.1E-10 75.3 4.2 43 247-293 122-169 (170)
488 TIGR03880 KaiC_arch_3 KaiC dom 98.0 7.6E-05 1.7E-09 72.7 12.6 58 264-322 106-177 (224)
489 TIGR00416 sms DNA repair prote 98.0 8.2E-05 1.8E-09 80.3 13.3 62 264-325 169-247 (454)
490 TIGR00767 rho transcription te 98.0 1.1E-05 2.3E-10 84.8 6.2 55 104-162 129-194 (415)
491 cd01136 ATPase_flagellum-secre 97.9 1.3E-05 2.8E-10 82.5 6.1 50 122-175 56-105 (326)
492 PRK01889 GTPase RsgA; Reviewed 97.9 7.2E-06 1.6E-10 85.8 4.3 68 126-196 185-254 (356)
493 PRK09270 nucleoside triphospha 97.9 1.1E-05 2.3E-10 79.2 4.9 67 135-205 32-103 (229)
494 PLN02796 D-glycerate 3-kinase 97.9 4.2E-06 9.1E-11 86.3 2.1 53 124-176 80-140 (347)
495 PRK09183 transposase/IS protei 97.9 7.4E-05 1.6E-09 74.8 10.8 53 106-159 72-125 (259)
496 PRK07594 type III secretion sy 97.9 1.2E-05 2.6E-10 85.6 5.3 63 105-175 129-191 (433)
497 PRK10416 signal recognition pa 97.9 8.4E-06 1.8E-10 83.9 3.5 69 134-205 112-191 (318)
498 PTZ00454 26S protease regulato 97.9 0.00011 2.3E-09 78.1 11.8 67 261-333 234-317 (398)
499 PRK00300 gmk guanylate kinase; 97.9 1.1E-05 2.4E-10 77.3 4.0 28 134-161 3-30 (205)
500 PRK10078 ribose 1,5-bisphospho 97.9 1.1E-05 2.3E-10 76.6 3.9 35 136-176 2-36 (186)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.1e-70 Score=598.42 Aligned_cols=388 Identities=35% Similarity=0.569 Sum_probs=326.9
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CC
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MP 180 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~ 180 (513)
+..+.|+|++++.+++....+++|+|||+.++|||++||||||||||||||++|+|+.+.+...+|+|++||++.. ..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~ 102 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSF 102 (613)
T ss_pred cceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhh
Confidence 4578999999988655334678999999999999999999999999999999999998875567999999996532 33
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc--hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
++.+|||.|+|.++|.+||+|+|.|.+.+++|.. ..+++++|+++++.+||.+++|+++| +...+++||||||||+|
T Consensus 103 ~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig-~~~~rgiSGGErkRvsi 181 (613)
T KOG0061|consen 103 RKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIG-NPGIRGLSGGERKRVSI 181 (613)
T ss_pred hheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceec-CCCCCccccchhhHHHH
Confidence 5678999999999999999999999999999873 36788899999999999999999997 55559999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (513)
|.+|++||.||||||||||||+.++.++++.|++++++|+|||+|+|||+.+++++||++++|.+|+++|+|++.++.++
T Consensus 182 a~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~f 261 (613)
T KOG0061|consen 182 ALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEF 261 (613)
T ss_pred HHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHH
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred hHhcCCCCCCCCCchHHHHHHhhcc--hhHHHHhhccccCCCCCCcccccchHHHHHHHHHHHh-cCHHHHHHHHHHHhh
Q 010314 339 FSNAGFPCPIMQSPSDHFLRAINTD--FDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQ-SSADAAAVETMILRL 415 (513)
Q Consensus 339 f~~~g~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~s~~~~~~~~~~~~~ 415 (513)
|++.|++||...||+|+++++++.+ .+.... ..+.......++ .....+.........
T Consensus 262 f~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (613)
T KOG0061|consen 262 FSSLGFPCPELENPADFLLDLLSVDSGTRELEE-------------------AVRIAKLINKFSQTDNLKKTLEALEKSL 322 (613)
T ss_pred HHhCCCCCCCcCChHHHHHHHHccCCCchhHHh-------------------HHHHHHHhhhccccchhhhhHHHHhhhc
Confidence 9999999999999999999988743 111110 011111111222 111111111001111
Q ss_pred hhccCCCccCCCCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHH
Q 010314 416 TEKEGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFN 495 (513)
Q Consensus 416 ~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~liiG~~f~~l~~~~~~~~~r~g~lf~~~~~~ 495 (513)
... ...+.....+||.|++.|++|.+++++|||.+.+.|+++.+++|+++|++||+++++..++++|.|++||.+.+.
T Consensus 323 ~~~--~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~ 400 (613)
T KOG0061|consen 323 STS--KKVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFM 400 (613)
T ss_pred ccc--cccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHH
Confidence 111 111112278999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-hHHHHHHHhcC
Q 010314 496 SLLNIA-GVPALMKEIKV 512 (513)
Q Consensus 496 ~~~~~~-~vp~~~~e~~~ 512 (513)
.|.++. +++.|..||++
T Consensus 401 ~f~~~~~~i~~f~~e~~~ 418 (613)
T KOG0061|consen 401 TFLSMFGAVPVFPQERPI 418 (613)
T ss_pred HHHHHHhHHHHhHHHHHH
Confidence 998887 59999999875
No 2
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-69 Score=610.47 Aligned_cols=381 Identities=28% Similarity=0.450 Sum_probs=336.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCC
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPY 181 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~~ 181 (513)
....|+|+.++.+.+. ..+++|+||++.++||.++||||+|||||||||++|+|+... +.++|+|+++|.+.. ...
T Consensus 786 ~V~~w~dl~~~~~~qG-~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~ 863 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQG-GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFA 863 (1391)
T ss_pred ceEEEEeCCccccccc-cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhc
Confidence 4678899988886543 567899999999999999999999999999999999999643 468999999998754 345
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCch--hhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~--~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
|.+|||.|+|.|.+.+||+|.|.|+|.+|+|... .++.+.|+++++.++|++++|.+|| .+. .|||.+||||++||
T Consensus 864 R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG-~~G-~GLs~eQRKrLTIg 941 (1391)
T KOG0065|consen 864 RVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVG-LPG-SGLSTEQRKRLTIG 941 (1391)
T ss_pred cccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhcc-CCC-CCCCHHHhceeeEE
Confidence 7899999999999999999999999999988754 4556889999999999999999997 655 89999999999999
Q ss_pred HHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe-CCeEEEEeChHH---
Q 010314 260 RELVMRP-HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-NGNTLFFGETLA--- 334 (513)
Q Consensus 260 raL~~~P-~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~-~G~iv~~G~~~~--- 334 (513)
.+|+.+| .||||||||||||+.++..|++++|++++.|+|||||||||+..+++.||++++|+ +|++||+|+..+
T Consensus 942 VELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~ 1021 (1391)
T KOG0065|consen 942 VELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSS 1021 (1391)
T ss_pred EEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccH
Confidence 9999999 89999999999999999999999999999999999999999999999999999996 689999998754
Q ss_pred -HHHHhHhcC-CCCCCCCCchHHHHHHhhcchhHHHHhhccccCCCCCCcccccchHHHHHHHHHHHhcCHHHHHHHHHH
Q 010314 335 -CLQHFSNAG-FPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMI 412 (513)
Q Consensus 335 -~~~~f~~~g-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~ 412 (513)
+++||++.| .+|+...||+++++++++...... .. .++.+.|++|.+++++.+++
T Consensus 1022 ~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~----------------~~-------~D~a~~w~~S~e~k~~~e~v 1078 (1391)
T KOG0065|consen 1022 KLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS----------------LS-------VDFAEIWKNSEEYKRNKELV 1078 (1391)
T ss_pred HHHHHHHhcCCccCCCCCChHHHHHhhcccccccc----------------cC-------ccHHHHHhccHHHHHHHHHH
Confidence 567999975 899999999999999876541110 01 14667799999999998888
Q ss_pred Hhhhhcc-----CCCccCCCCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 010314 413 LRLTEKE-----GPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAA 487 (513)
Q Consensus 413 ~~~~~~~-----~~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~liiG~~f~~l~~~~~~~~~r~g~ 487 (513)
.++.+.. +..++++|++|+|.|++.|+||+++.+||+|.|+++|++++++.||+||+.||++|++..++||.+|+
T Consensus 1079 ~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a 1158 (1391)
T KOG0065|consen 1079 KELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGA 1158 (1391)
T ss_pred HHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHH
Confidence 8765432 22344669999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhc
Q 010314 488 IFVFVSFNSLLNIAGVPALMKEIK 511 (513)
Q Consensus 488 lf~~~~~~~~~~~~~vp~~~~e~~ 511 (513)
+|.+++|.+-++.+.+|.+++-|.
T Consensus 1159 ~yma~v~~~~~~~~~~~~~v~~e~ 1182 (1391)
T KOG0065|consen 1159 AYMATVFSGPNNNQLQQPAVATER 1182 (1391)
T ss_pred HHHHHHHhhhhhhhhhhhHHhhhh
Confidence 999999999999888888876553
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=4.7e-64 Score=558.08 Aligned_cols=390 Identities=27% Similarity=0.433 Sum_probs=309.8
Q ss_pred CceEEEEeEEEEEeccc------------------------cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 103 GASVVWKDLTVTIKGKR------------------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~------------------------~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
...+++.|++++....+ ..++.+|+|||+++++||++||+|||||||||||++|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 45678888887764221 124679999999999999999999999999999999999
Q ss_pred CCCCCCCceeEEEECCEeCCC-CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc--hhhHHHHHHHHHHHcCChhHH
Q 010314 159 RLPHSARMYGEVFVNGAKSEM-PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSDYA 235 (513)
Q Consensus 159 ~~~~~~~~~G~I~i~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~~~L~~~~ 235 (513)
+.+++. .+|+|.+||++... ..+.++||+|++.+++.+||+||+.+.+.++.+.. .++..++++++++.+||.++.
T Consensus 117 ~~~~~~-~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 195 (659)
T PLN03211 117 RIQGNN-FTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCE 195 (659)
T ss_pred CCCCCc-eeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhc
Confidence 988752 46999999987532 23569999999999999999999999877665432 133456789999999999999
Q ss_pred hhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcC
Q 010314 236 NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315 (513)
Q Consensus 236 ~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~ 315 (513)
++.++ +..+++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|++..+++++|
T Consensus 196 ~t~vg-~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 196 NTIIG-NSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred CceeC-CCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99886 66788999999999999999999999999999999999999999999999998889999999999976789999
Q ss_pred CEEEEEeCCeEEEEeChHHHHHHhHhcCCCCCCCCCchHHHHHHhhcchhHHHHhhccccCCCCCCcccccchHHHHHHH
Q 010314 316 DRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTL 395 (513)
Q Consensus 316 D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 395 (513)
|++++|++|++++.|+++++.++|++.|++||...||+|++++.+..+.... +.. +.+.....+.+
T Consensus 275 D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~--------~~~------~~~~~~~~~~l 340 (659)
T PLN03211 275 DSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTD--------GVS------EREKPNVKQSL 340 (659)
T ss_pred ceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCC--------Ccc------ccccchHHHHH
Confidence 9999999999999999999999999999999999999999998876432100 000 00000111233
Q ss_pred HHHHhcCHHHHHHHHHHHh--hhh----------ccCC-CccCCCCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHH
Q 010314 396 EATYQSSADAAAVETMILR--LTE----------KEGP-FLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMI 462 (513)
Q Consensus 396 ~~~~~~s~~~~~~~~~~~~--~~~----------~~~~-~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~ 462 (513)
...|++... +...+.+.. ... .+.. .....+..+||+|+.+|++|++++ |||+.+.++|++++++
T Consensus 341 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~ 418 (659)
T PLN03211 341 VASYNTLLA-PKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIA 418 (659)
T ss_pred HHHHHhhcc-HHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHH
Confidence 444532111 111101000 000 0000 011225578999999999999998 8999999999999999
Q ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhcC
Q 010314 463 LTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLN-IAGVPALMKEIKV 512 (513)
Q Consensus 463 ~~liiG~~f~~l~~~~~~~~~r~g~lf~~~~~~~~~~-~~~vp~~~~e~~~ 512 (513)
+|+++|++||+++ ..++++|.|++||++++.++.+ +..++.|..||.|
T Consensus 419 ~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v 467 (659)
T PLN03211 419 AALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAI 467 (659)
T ss_pred HHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999985 6789999999999999977654 5788888888865
No 4
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.3e-64 Score=561.33 Aligned_cols=374 Identities=29% Similarity=0.440 Sum_probs=315.5
Q ss_pred ccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCcccCCCCC
Q 010314 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLT 198 (513)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lT 198 (513)
..+.+|+|+|+.+++||++||+|||||||||||++|+|+.+++...+|+|.+||.+... .++.++||+|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 35679999999999999999999999999999999999987753457999999987532 2356899999999999999
Q ss_pred HHHHHHHHHHhcCCCc--hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010314 199 VREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (513)
Q Consensus 199 V~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs 276 (513)
|+|||.|++.++.+.. ..+++++++++++.+||.+++|+.+|+....++|||||||||+||++|+.+|+||||||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 9999999988776542 23456679999999999999999997322467899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHhHhcCCCCCCCCCchHHH
Q 010314 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHF 356 (513)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~ 356 (513)
|||+.++..+++.|++++++|+|||+++||+..+++++||++++|++|++++.|+++++.++|++.|++||...||+|++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~ 275 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFY 275 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 99999999999999999988999999999998789999999999999999999999999999999999999999999999
Q ss_pred HHHhhcchhHHHHhhccccCCCCCCcccccchHHHHHHHHHHHhcCHHHHHHHHHHHhhhhc-------cCCCccCCCCC
Q 010314 357 LRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEK-------EGPFLKSKGKA 429 (513)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 429 (513)
++.+..+... ........+.+.+.|+.+..+.+..+........ ........+..
T Consensus 276 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (617)
T TIGR00955 276 VQVLAVIPGS------------------ENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNA 337 (617)
T ss_pred HHHhhcCccc------------------ccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCC
Confidence 8876543110 0111234456667777766555444333211110 00111235678
Q ss_pred CHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHH
Q 010314 430 SSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIFVFVSFNSLLNI-AGVPALMK 508 (513)
Q Consensus 430 s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~liiG~~f~~l~~~~~~~~~r~g~lf~~~~~~~~~~~-~~vp~~~~ 508 (513)
+|+.|+.+|++|+++.+||||.++++|+++.+++|+++|++||+++++..++++|.|++|+++++++|.++ ..++.|..
T Consensus 338 ~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~ 417 (617)
T TIGR00955 338 SWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTA 417 (617)
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875 55788888
Q ss_pred HhcC
Q 010314 509 EIKV 512 (513)
Q Consensus 509 e~~~ 512 (513)
||.|
T Consensus 418 er~v 421 (617)
T TIGR00955 418 ELPV 421 (617)
T ss_pred HHHH
Confidence 8864
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.2e-64 Score=593.90 Aligned_cols=385 Identities=24% Similarity=0.383 Sum_probs=322.3
Q ss_pred CceEEEEeEEEEEeccc--------cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 010314 103 GASVVWKDLTVTIKGKR--------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~--------~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G 174 (513)
+..+.|+||++.++.+. ...+.+|+|||+.+++|+++||+|||||||||||++|+|+.+++ ..+|+|.++|
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG 943 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISG 943 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECC
Confidence 34799999999985321 12457999999999999999999999999999999999997543 3579999999
Q ss_pred EeCCC--CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc--hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCH
Q 010314 175 AKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 175 ~~~~~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSG 250 (513)
.+... ..+.+|||+|++.+++.+||+|+|.|++.++.+.. ..++.+.++++++.++|.+++++.+| .+.+++|||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg-~~~~~~LSg 1022 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVG-LPGVTGLST 1022 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccC-CCCCCCcCH
Confidence 76432 23568999999999999999999999987776532 13445679999999999999999886 555689999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC-CeEEEE
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTLFF 329 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv~~ 329 (513)
||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++||+..+++++||++++|++ |+++++
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 9999999999999999999999999999999999999999999988999999999998778999999999996 899999
Q ss_pred eCh----HHHHHHhHhc-CCC-CCCCCCchHHHHHHhhcchhHHHHhhccccCCCCCCcccccchHHHHHHHHHHHhcCH
Q 010314 330 GET----LACLQHFSNA-GFP-CPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSA 403 (513)
Q Consensus 330 G~~----~~~~~~f~~~-g~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ 403 (513)
|++ .++.+||+++ |.+ ||...||+|++++.+..+.... ...++.+.|+.|.
T Consensus 1103 G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~-----------------------~~~d~~~~~~~s~ 1159 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVK-----------------------LGIDFAEHYKSSS 1159 (1470)
T ss_pred CCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhccccccc-----------------------ccchHHHHHhccH
Confidence 996 5789999997 664 9999999999998765321100 0124667788888
Q ss_pred HHHHHHHHHHhhhhc----cCCCccCCCCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhcCCCCCh-
Q 010314 404 DAAAVETMILRLTEK----EGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSL- 478 (513)
Q Consensus 404 ~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~liiG~~f~~l~~~~- 478 (513)
.++.+.+.+...... .+.....++..+||+|+++|+||+++++||||.|+++|+++++++||++|++||+++++.
T Consensus 1160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~ 1239 (1470)
T PLN03140 1160 LYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRS 1239 (1470)
T ss_pred HHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Confidence 877766655543321 112234568999999999999999999999999999999999999999999999999875
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhcC
Q 010314 479 --SSVVTRVAAIFVFVSFNSLLNIA-GVPALMKEIKV 512 (513)
Q Consensus 479 --~~~~~r~g~lf~~~~~~~~~~~~-~vp~~~~e~~~ 512 (513)
.++++++|++|++++|+++.++. .+|.|..||.|
T Consensus 1240 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~v 1276 (1470)
T PLN03140 1240 NANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTV 1276 (1470)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999997764 46888888864
No 6
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.3e-63 Score=592.38 Aligned_cols=377 Identities=24% Similarity=0.335 Sum_probs=313.5
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCCC----CCceEEEEcCCcccCCC
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKSEM----PYGSYGFVERETTLIGS 196 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~-~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~~~ 196 (513)
.+++|+|||+.+++||+++|+||||||||||||+|+|+.++. ...+|+|.+||.+... .++.++|++|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 356999999999999999999999999999999999996321 1246999999986421 23459999999999999
Q ss_pred CCHHHHHHHHHHhcCCC------chhhHHHH-HHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEE
Q 010314 197 LTVREYLYYSALLQLPG------FFCQRKNV-VEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVL 269 (513)
Q Consensus 197 lTV~E~l~~~~~~~~~~------~~~~~~~~-v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iL 269 (513)
+||+|+|.|++.++.+. ...+..++ ++++++.+||.+++++.+| +..+++|||||||||+||++|+.+|+||
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg-~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVG-NDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeC-CCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 99999999988776532 11222223 4678999999999999996 7789999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHhHhcCCCCCC
Q 010314 270 FIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPI 348 (513)
Q Consensus 270 llDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~ 348 (513)
||||||+|||+.++..+++.|++++++ |+|||+++||+..+++++||+|++|++|+++++|+++++.+||+++|++||.
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~ 311 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPD 311 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999864 9999999999988999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHhhcchhHHHHhhccccCCCCCCcccccchHHHHHHHHHHHhcCHHHHHHHHHHHhhhhc----------
Q 010314 349 MQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEK---------- 418 (513)
Q Consensus 349 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~---------- 418 (513)
..||+|++++..+.+ .+.. ...+... .....+++...|+.|..++.+.+.+......
T Consensus 312 ~~n~aDfl~~~~~~~-~~~~--~~~~e~~----------~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (1394)
T TIGR00956 312 RQTTADFLTSLTSPA-ERQI--KPGYEKK----------VPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAY 378 (1394)
T ss_pred CCChHHHHHhccChh-hhhc--ccccccc----------CCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHH
Confidence 999999888765433 2211 0111110 0012346777788887766554443321100
Q ss_pred ---------cCCCccCCCCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHH
Q 010314 419 ---------EGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVAAIF 489 (513)
Q Consensus 419 ---------~~~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~liiG~~f~~l~~~~~~~~~r~g~lf 489 (513)
........+..|+|.|+++|++|+++++||||.++++|+++++++||++|++||+++++.+++++|.|++|
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf 458 (1394)
T TIGR00956 379 RESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALF 458 (1394)
T ss_pred HHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Confidence 00111235788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHhcC
Q 010314 490 VFVSFNSLLNIAGVPALMKEIKV 512 (513)
Q Consensus 490 ~~~~~~~~~~~~~vp~~~~e~~~ 512 (513)
|+++|++|+++.+++.++.||.|
T Consensus 459 ~~~~~~~~~~~~~i~~~~~eR~i 481 (1394)
T TIGR00956 459 FAILFNAFSSLLEIASMYEARPI 481 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999976
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.3e-62 Score=583.88 Aligned_cols=382 Identities=29% Similarity=0.467 Sum_probs=319.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCc
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYG 182 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~ 182 (513)
..++|+||+++++.+ ...+.+|+|||+.+++||++||+|||||||||||++|+|+.++....+|+|.+||++... .++
T Consensus 758 ~~l~~~nl~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIK-KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred ceEEEEeeEEEecCC-CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence 458999999998532 134679999999999999999999999999999999999987432235999999987632 245
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc--hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.++||+|++.+++.+||+|||.+++.++.+.. ..++.++++++++.++|.+++|+.++ . ...+|||||||||+||+
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~-~-~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVG-V-PGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeC-C-CCCCCCHHHhhHHHHHH
Confidence 79999999999999999999999987775432 13455679999999999999999886 2 22389999999999999
Q ss_pred HHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCC-eEEEEeCh----HH
Q 010314 261 ELVMRPH-VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG-NTLFFGET----LA 334 (513)
Q Consensus 261 aL~~~P~-iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G-~iv~~G~~----~~ 334 (513)
||+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++||+...+++.||++++|++| +++++|++ .+
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~ 994 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHT 994 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccch
Confidence 9999997 999999999999999999999999998889999999999987678899999999987 99999997 56
Q ss_pred HHHHhHhcCC-CCCCCCCchHHHHHHhhcchhHHHHhhccccCCCCCCcccccchHHHHHHHHHHHhcCHHHHHHHHHHH
Q 010314 335 CLQHFSNAGF-PCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMIL 413 (513)
Q Consensus 335 ~~~~f~~~g~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~ 413 (513)
+.+||+..|+ +||...||+|++++.+....... ..+++.+.|+.+...+.+.+.+.
T Consensus 995 ~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~-----------------------~~~~~~~~~~~s~~~~~~~~~~~ 1051 (1394)
T TIGR00956 995 IINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH-----------------------ANQDYHEVWRNSSEYQAVKNELD 1051 (1394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc-----------------------hhccHHHHHhcCHHHHHHHHHHH
Confidence 7899999996 89999999999998875431100 01234556777776655544443
Q ss_pred hhhhc----cCC---CccCCCCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHH
Q 010314 414 RLTEK----EGP---FLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSLSSVVTRVA 486 (513)
Q Consensus 414 ~~~~~----~~~---~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~liiG~~f~~l~~~~~~~~~r~g 486 (513)
..... ... ....+++.|||.|+++|++|+++++||||.++++|+++++++||++|++||+++++..++++|.|
T Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g 1131 (1394)
T TIGR00956 1052 RLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMF 1131 (1394)
T ss_pred HhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 32211 010 11135889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhc
Q 010314 487 AIFVFVSFNSLLNIAGVPALMKEIK 511 (513)
Q Consensus 487 ~lf~~~~~~~~~~~~~vp~~~~e~~ 511 (513)
++|+.+++.++.....+|.|+.||.
T Consensus 1132 ~~f~~~~~~~~~~~~~~~~f~~~r~ 1156 (1394)
T TIGR00956 1132 AVFMATVLFNPLIQQYLPPFVAQRD 1156 (1394)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999998888888999888875
No 8
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.8e-61 Score=571.31 Aligned_cols=379 Identities=23% Similarity=0.378 Sum_probs=311.7
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCcccCCCCCH
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTV 199 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV 199 (513)
.+.+|+||||.++|||+++|+||||||||||||+|+|+++++...+|+|.+||.+... .++.++|++|++.+++.+||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 4569999999999999999999999999999999999998864457999999987532 24579999999999999999
Q ss_pred HHHHHHHHHhcCCCc---------hhhH------------------------HHHHHHHHHHcCChhHHhhhhcCCCCCC
Q 010314 200 REYLYYSALLQLPGF---------FCQR------------------------KNVVEDAIHAMSLSDYANKLIGGHCYMK 246 (513)
Q Consensus 200 ~E~l~~~~~~~~~~~---------~~~~------------------------~~~v~~~l~~~~L~~~~~~~vg~~~~~~ 246 (513)
+|||.|++.++.+.. ..++ ...++++++.+||.+++|+.+| +..++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg-~~~~r 335 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVG-DEMIR 335 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeC-Ccccc
Confidence 999999887652210 0110 1135779999999999999986 77889
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
+|||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|+|+|+++||+..+++++||+|++|++|+
T Consensus 336 glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ 415 (1470)
T PLN03140 336 GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQ 415 (1470)
T ss_pred CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCce
Confidence 9999999999999999999999999999999999999999999999986 589999999999889999999999999999
Q ss_pred EEEEeChHHHHHHhHhcCCCCCCCCCchHHHHHHhhcchhHHHHhhccccCCCCCCcccccchHHHHHHHHHHHhcCHHH
Q 010314 326 TLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADA 405 (513)
Q Consensus 326 iv~~G~~~~~~~~f~~~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~ 405 (513)
++++|+++++.+||+++|++||...||+|++++..+....+. .|... ..+. .....+++.+.|+++..+
T Consensus 416 ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~-----~~~~~--~~p~----~~~~~~~~~~~~~~s~~~ 484 (1470)
T PLN03140 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQ-----YWADR--NKPY----RYISVSEFAERFKSFHVG 484 (1470)
T ss_pred EEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhh-----hhhcc--CCcc----ccCCHHHHHHHHHhcHHH
Confidence 999999999999999999999999999998887665321111 01100 0000 001234678889988877
Q ss_pred HHHHHHHHhhhhc----cCCCccCCCCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhcCCCCCh---
Q 010314 406 AAVETMILRLTEK----EGPFLKSKGKASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLGHSL--- 478 (513)
Q Consensus 406 ~~~~~~~~~~~~~----~~~~~~~~~~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~liiG~~f~~l~~~~--- 478 (513)
+.+.+.+...... ........|..+++.|+..|++|+++.+|||+.+++.|+++.+++|+++|++||+++.+.
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~ 564 (1470)
T PLN03140 485 MQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNE 564 (1470)
T ss_pred HHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 6665544321111 111112458899999999999999999999999999999999999999999999997542
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC
Q 010314 479 SSVVTRVAAIFVFVSFNSLLNIAGVPALMKEIKV 512 (513)
Q Consensus 479 ~~~~~r~g~lf~~~~~~~~~~~~~vp~~~~e~~~ 512 (513)
.+.+.+.|++||++++++|+++++++.++.||.|
T Consensus 565 ~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~v 598 (1470)
T PLN03140 565 EDGALYIGALLFSMIINMFNGFAELALMIQRLPV 598 (1470)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 3456788999999999999999999999998875
No 9
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-55 Score=413.99 Aligned_cols=218 Identities=26% Similarity=0.348 Sum_probs=195.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||+++| +...+|+|||+++.+||+++|+||||||||||||||+|+.++++ |+|.++|.+...
T Consensus 2 mi~i~~l~K~f-----g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~---G~I~i~g~~~~~~~~~~ 73 (240)
T COG1126 2 MIEIKNLSKSF-----GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS---GSITVDGEDVGDKKDIL 73 (240)
T ss_pred eEEEEeeeEEe-----CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCC---ceEEECCEeccchhhHH
Confidence 57999999999 45689999999999999999999999999999999999999985 999999975421
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.++.+|+|||+..|||++||.||+.++...-.....++.++...++|+.+||.+.++. ||.+|||||||||+|
T Consensus 74 ~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~------yP~qLSGGQqQRVAI 147 (240)
T COG1126 74 KLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADA------YPAQLSGGQQQRVAI 147 (240)
T ss_pred HHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhh------CccccCcHHHHHHHH
Confidence 2357999999999999999999999876543333335667788999999999998877 667999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||||+.+|+++++|||||+|||+...++++.+++|+++|.|.||+||.. ..+.+.+|||++|++|+++..|++++++.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM-~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEM-GFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechh-HHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 9999999999999999999999999999999999999999999999986 58999999999999999999999987653
No 10
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.9e-53 Score=479.17 Aligned_cols=377 Identities=28% Similarity=0.465 Sum_probs=320.1
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCcccCCCCCH
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTV 199 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV 199 (513)
...+|+|+++.++||+++.++||.||||||||++|+|-++......|+|.+||.+.+. .++.++|+.|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 3479999999999999999999999999999999999987655457899999987432 34679999999999999999
Q ss_pred HHHHHHHHHhcCCCch---hhHHH----HHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 010314 200 REYLYYSALLQLPGFF---CQRKN----VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272 (513)
Q Consensus 200 ~E~l~~~~~~~~~~~~---~~~~~----~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllD 272 (513)
+|+|.|+++++.+... -.+++ ..+.+++.+||++++|+++| ++..+++||||||||+||.+++.+++++++|
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VG-nd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVG-NDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceec-ccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999877422 11222 46789999999999999996 9999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHhHhcCCCCCCCCC
Q 010314 273 EPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQS 351 (513)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~ 351 (513)
|+|.|||+.++.++++.|+++++. +.|++++++|++++++++||+|++|.+|++||+|+.+++++||+++|+.||++.+
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~ 365 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKG 365 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccC
Confidence 999999999999999999999864 8999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhcchhHHHHhhccccCCCCCCcccccchHHHHHHHHHHHhcCHHHHHHHHHHHhhhhcc----CCCccCCC
Q 010314 352 PSDHFLRAINTDFDRIIAMCKSWQDDHGDFSSVNMDTAVAIRTLEATYQSSADAAAVETMILRLTEKE----GPFLKSKG 427 (513)
Q Consensus 352 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~----~~~~~~~~ 427 (513)
++|++.+..... + ..+-|....... ......++.+.|.+++.+.++...+.....+. ......+|
T Consensus 366 ~ADfLt~vts~k-~----~~~~~~~~~~~~------~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y 434 (1391)
T KOG0065|consen 366 TADFLTEVTSKK-D----QEQYWNKRSKPY------PYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKY 434 (1391)
T ss_pred HHHHHHHhhcCc-c----ccccccccCCCc------ccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCce
Confidence 999766655411 1 011111110001 11123568888999999988776665433221 12223568
Q ss_pred CCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhcCCC-CChHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 010314 428 KASSATRVAVLTWRSLLIMSREWKYYWLRLILCMILTLCVGTVFSGLG-HSLSSVVTRVAAIFVFVSFNSLLNIAGVPAL 506 (513)
Q Consensus 428 ~~s~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~liiG~~f~~l~-~~~~~~~~r~g~lf~~~~~~~~~~~~~vp~~ 506 (513)
..++|.|+++|+.|.|+.+.||..++..++++.+++|+|+|++||+.+ .+..+.+.|+|++||+++|.+|+++++++..
T Consensus 435 ~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~ 514 (1391)
T KOG0065|consen 435 SVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALT 514 (1391)
T ss_pred eccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 7778899999999999999999999999777
Q ss_pred HHHh
Q 010314 507 MKEI 510 (513)
Q Consensus 507 ~~e~ 510 (513)
++.|
T Consensus 515 ~~~~ 518 (1391)
T KOG0065|consen 515 FQRL 518 (1391)
T ss_pred Hhhc
Confidence 7655
No 11
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-52 Score=398.75 Aligned_cols=226 Identities=25% Similarity=0.424 Sum_probs=201.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++|+|+++.|. .+.+++|+|++|++||+++++|||||||||+||+|.+++.|++ |+|+++|+++...
T Consensus 2 I~~~nvsk~y~-----~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~---G~I~i~g~~i~~~d~~~L 73 (309)
T COG1125 2 IEFENVSKRYG-----NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS---GEILIDGEDISDLDPVEL 73 (309)
T ss_pred ceeeeeehhcC-----CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCC---ceEEECCeecccCCHHHH
Confidence 68999999994 5679999999999999999999999999999999999999985 9999999986432
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh--HHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD--YANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~--~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
++.+|||-|...|||++||.||+.+-..+.... .++.+++++|+|+.+||+. ++++ ||++|||||+|||.+
T Consensus 74 Rr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~-k~~i~~r~~ELl~lvgL~p~~~~~R------yP~eLSGGQQQRVGv 146 (309)
T COG1125 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWD-KERIKKRADELLDLVGLDPSEYADR------YPHELSGGQQQRVGV 146 (309)
T ss_pred HHhhhhhhhhcccCCCccHHHHHHhhhhhcCCC-HHHHHHHHHHHHHHhCCCHHHHhhc------CchhcCcchhhHHHH
Confidence 467999999999999999999998876654332 2456788999999999974 6666 778999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||||+.+|+||+||||+++|||.++.++-+.++++.++ |+|||++||+. ++++.++|||++|++|+++.+++|++++.
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999865 99999998886 68999999999999999999999999874
Q ss_pred HhHhcCCCCCCCCCchHHHHHHh
Q 010314 338 HFSNAGFPCPIMQSPSDHFLRAI 360 (513)
Q Consensus 338 ~f~~~g~~~~~~~~~~d~~~~~~ 360 (513)
+|++.|+..+
T Consensus 226 -------------~Pan~FV~~f 235 (309)
T COG1125 226 -------------NPANDFVEDF 235 (309)
T ss_pred -------------CccHHHHHHH
Confidence 5666676654
No 12
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.5e-52 Score=406.53 Aligned_cols=221 Identities=25% Similarity=0.310 Sum_probs=197.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++++++.|..+......+|+|||++|++||++||+|.||||||||+|||.++..|++ |+|.++|.++..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pts---G~v~v~G~di~~l~~~~L 78 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS---GSVFVDGQDLTALSEAEL 78 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCC---ceEEEcCEecccCChHHH
Confidence 68999999997543334579999999999999999999999999999999999999985 999999976432
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.++.||++||+..|+...||.||+.|+..+... ..++.+++|.++|+.+||.+.+++ ||.+|||||||||+
T Consensus 79 r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~-~k~ei~~RV~elLelVgL~dk~~~------yP~qLSGGQKQRVa 151 (339)
T COG1135 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV-PKAEIKQRVAELLELVGLSDKADR------YPAQLSGGQKQRVA 151 (339)
T ss_pred HHHHhhccEEeccccccccchHHhhhhhhHhhcCC-CHHHHHHHHHHHHHHcCChhhhcc------CchhcCcchhhHHH
Confidence 246799999999999999999999999876542 235778899999999999988776 66799999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+|||+|||||+|||.+...|+++|+++.++ |.||++++|++ +.+.++||||.+|++|++++.|+..+++
T Consensus 152 IARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 152 IARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999999865 99999999886 6899999999999999999999998876
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 231 ~ 231 (339)
T COG1135 231 A 231 (339)
T ss_pred c
Confidence 4
No 13
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-51 Score=392.86 Aligned_cols=204 Identities=30% Similarity=0.411 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.+.++++++.|. ...+|+|+|++|.+||+++|+||||||||||||+|+|+.+|++ |+|.++|++...+...+
T Consensus 3 ~l~i~~v~~~f~-----~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~---G~V~~~g~~v~~p~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFG-----GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTS---GEVLLDGRPVTGPGPDI 74 (248)
T ss_pred eEEEEeeEEEeC-----ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCcccCCCCCCE
Confidence 589999999995 3679999999999999999999999999999999999999985 99999999876666789
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~ 264 (513)
+||||++.|+|.+||.||+.++...... ...+..+++.++|+.+||.++.++ ||++|||||||||+|||||+.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~-~~~e~~~~a~~~L~~VgL~~~~~~------~P~qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGK-SKAEARERAKELLELVGLAGFEDK------YPHQLSGGMRQRVAIARALAT 147 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhcccc-chHhHHHHHHHHHHHcCCcchhhc------CccccChHHHHHHHHHHHHhc
Confidence 9999999999999999999998766531 223556689999999999999887 677999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCC
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (513)
+|+||+||||+++||+.++..+.+.|.++.+ .++|||++||+. +|+..++|||++|.++
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 9999999999999999999999999999975 589999998887 6888999999999984
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.2e-50 Score=386.35 Aligned_cols=220 Identities=25% Similarity=0.358 Sum_probs=194.8
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (513)
...+++++|+++| +.+.|++||+++|++||+++||||||||||||||+|.|+++|+. |+|+++|.++..
T Consensus 6 ~~~I~vr~v~~~f-----G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~---GeI~i~G~~i~~ls~ 77 (263)
T COG1127 6 EPLIEVRGVTKSF-----GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDK---GEILIDGEDIPQLSE 77 (263)
T ss_pred cceEEEeeeeeec-----CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCC---CeEEEcCcchhccCH
Confidence 3579999999998 45689999999999999999999999999999999999999985 999999987432
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqr 253 (513)
.++++|++||...||..+||.||+.|+.+-.........++.+..-|+.+||... ++. +|.+|||||+
T Consensus 78 ~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~------~PsELSGGM~ 151 (263)
T COG1127 78 EELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADL------YPSELSGGMR 151 (263)
T ss_pred HHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhh------CchhhcchHH
Confidence 1356999999999999999999999876533222223566778888999999876 555 6679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
||++|||||+.+|+|||+||||+||||.++..+-++|++|++. |.|++++|||. +.++.+|||+++|.+|++++.|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCH
Confidence 9999999999999999999999999999999999999999876 99999999987 589999999999999999999999
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
+++..
T Consensus 231 ~el~~ 235 (263)
T COG1127 231 EELLA 235 (263)
T ss_pred HHHHh
Confidence 98764
No 15
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.8e-50 Score=394.01 Aligned_cols=217 Identities=27% Similarity=0.385 Sum_probs=191.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||++.|. ++.+|+|+||++++|++++|+||||||||||||+|+|+++|.. |+|+++|+++..
T Consensus 2 ~L~~~~ls~~y~-----~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~---G~V~l~g~~i~~~~~ke 73 (258)
T COG1120 2 MLEVENLSFGYG-----GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKS---GEVLLDGKDIASLSPKE 73 (258)
T ss_pred eeEEEEEEEEEC-----CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECCCchhhcCHHH
Confidence 589999999994 5689999999999999999999999999999999999999975 999999987543
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcC---CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQL---PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++||||.......+||+|.+.++..-+. .....+..+.++++|+.+|+.+++++.+. +|||||||||
T Consensus 74 lAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~------~LSGGerQrv 147 (258)
T COG1120 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD------ELSGGERQRV 147 (258)
T ss_pred HhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc------ccChhHHHHH
Confidence 23679999999888889999999987632111 11112344579999999999999999765 9999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
.|||||+.+|+||||||||++||..++.+++++++++++ +|+|||+++|++ ..+.++||++++|++|++++.|+|+++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~G~i~a~G~p~ev 226 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPEEV 226 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEeecCcchh
Confidence 999999999999999999999999999999999999985 599999999987 589999999999999999999999887
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
+
T Consensus 227 l 227 (258)
T COG1120 227 L 227 (258)
T ss_pred c
Confidence 5
No 16
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-50 Score=409.89 Aligned_cols=219 Identities=26% Similarity=0.395 Sum_probs=198.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~ 180 (513)
..++++||++.|. ...+|+|+|++|++||+++|+||||||||||||+|+|+..|++ |+|.++|+++.. .
T Consensus 4 ~~l~i~~v~k~yg-----~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~---G~I~l~G~~i~~lpp~ 75 (352)
T COG3842 4 PALEIRNVSKSFG-----DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS---GEILLDGEDITDVPPE 75 (352)
T ss_pred ceEEEEeeeeecC-----CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChh
Confidence 4789999999993 5679999999999999999999999999999999999999986 999999998542 3
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.+|+|||+..|||+|||+||+.|+..++.....++.++++.++++.++|.++.+++ |++|||||||||+|||
T Consensus 76 kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~------p~qLSGGQqQRVALAR 149 (352)
T COG3842 76 KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRK------PHQLSGGQQQRVALAR 149 (352)
T ss_pred hcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhC------hhhhChHHHHHHHHHH
Confidence 5789999999999999999999999987443222245778999999999999998884 5599999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||+.+|+|||||||.|+||...+.++...|+++.++ |.|.|++||+. +++..++|||++|++|++.-.|+|+++..
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHhh
Confidence 999999999999999999999999999999999854 99999999887 68999999999999999999999999754
No 17
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3e-49 Score=400.41 Aligned_cols=221 Identities=29% Similarity=0.410 Sum_probs=196.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~ 180 (513)
.+.++||++.|.. .+.+|+||||++++|+++||+||||||||||+|+|+|+++|++ |+|.++|.+... .
T Consensus 4 ~i~~~~l~k~~~~----~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~---G~i~i~G~~~~~~~~~~ 76 (293)
T COG1131 4 VIEVRNLTKKYGG----DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS---GEILVLGYDVVKEPAKV 76 (293)
T ss_pred eeeecceEEEeCC----CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEEcCEeCccCHHHH
Confidence 5789999999941 4679999999999999999999999999999999999999975 999999987533 2
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
++.+||++|++.+++.+||+|||.|.+.++.... ...+++++++++.++|.+..++.++ +||+||||||+||+
T Consensus 77 ~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~------~lS~G~kqrl~ia~ 149 (293)
T COG1131 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK-EEAEERIEELLELFGLEDKANKKVR------TLSGGMKQRLSIAL 149 (293)
T ss_pred HhheEEEccCCCCCccccHHHHHHHHHHHhCCCh-hHHHHHHHHHHHHcCCchhhCcchh------hcCHHHHHHHHHHH
Confidence 3579999999999999999999999888775432 2456789999999999986666554 99999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHh
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (513)
||+.+|+||||||||+||||.++..++++|++++++| +||++++|++ +++..+||+|++|++|+++++|++.++...+
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~ 228 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKF 228 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHHhh
Confidence 9999999999999999999999999999999999887 7999988876 6899999999999999999999988876554
Q ss_pred H
Q 010314 340 S 340 (513)
Q Consensus 340 ~ 340 (513)
.
T Consensus 229 ~ 229 (293)
T COG1131 229 G 229 (293)
T ss_pred c
Confidence 3
No 18
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.9e-49 Score=380.73 Aligned_cols=209 Identities=29% Similarity=0.381 Sum_probs=181.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++||++.|..+... ..+|++|||.|++||+++|+|||||||||||++|.|+..|++ |.|.++|.+...
T Consensus 2 i~~~~v~k~y~~~~~~-~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~---G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 2 IELKNVSKIYGLGGEK-VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTS---GEVLINGKDLTKLSEKEL 77 (226)
T ss_pred cEEeeeEEEeccCCcc-eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---ceEEECCEEcCcCCHHHH
Confidence 5689999998654322 579999999999999999999999999999999999999975 999999976432
Q ss_pred ---CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
+++.+|||||+..|+|.+||.||+.+++.+..... ....+.++++++.+||.+..++ .+|.+|||||||||
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~-~~~~~~~~~l~~~lgl~~~~~~-----~~p~eLSGGqqQRV 151 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSA-GRRKRAAEELLEVLGLEDRLLK-----KKPSELSGGQQQRV 151 (226)
T ss_pred HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCCh-hHHHHHHHHHHHhcCChhhhcc-----CCchhcCHHHHHHH
Confidence 23569999999999999999999998776543322 1456778999999999877652 25669999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
+|||||+.+|+|||+||||.+||+.+...|+++|++++++ |+|||++||++ .+...|||++.|.+|++
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999999865 99999999986 67889999999999983
No 19
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-49 Score=401.47 Aligned_cols=217 Identities=29% Similarity=0.420 Sum_probs=196.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.++++||++.|.+ ..+|+++|+++++||+++|+||||||||||||+|+|+.+|++ |+|.++|++... ..
T Consensus 3 ~i~l~~v~K~yg~-----~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~---G~I~i~g~~vt~l~P~~ 74 (338)
T COG3839 3 ELELKNVRKSFGS-----FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS---GEILIDGRDVTDLPPEK 74 (338)
T ss_pred EEEEeeeEEEcCC-----ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChhH
Confidence 6899999999842 229999999999999999999999999999999999999985 999999988643 34
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
|.+++|||+..|||+|||+||+.|+..++.-. ..+.+++|+++.+.++|.+++++++ .+|||||||||+||||
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~-k~ei~~rV~eva~~L~l~~lL~r~P------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVP-KAEIDKRVKEVAKLLGLEHLLNRKP------LQLSGGQRQRVALARA 147 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCCc-hHHHHHHHHHHHHHcCChhHHhcCc------ccCChhhHHHHHHHHH
Confidence 78999999999999999999999998765322 2467889999999999999999854 5999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|++++||||+|+||+..+..+...|+++.++ |.|+|.+||+. .++..++|||++|++|++...|++.++..
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999999999999999999999865 89999988886 58999999999999999999999999865
No 20
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-49 Score=376.49 Aligned_cols=220 Identities=29% Similarity=0.385 Sum_probs=193.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
+.++++||++.|+ .++++|+|||+.|++||++||+|+||||||||||+|+|+..++. |+|.++|.++..
T Consensus 2 ~~i~~~nl~k~yp----~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~---G~i~~~g~~i~~~~~k 74 (258)
T COG3638 2 MMIEVKNLSKTYP----GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTS---GEILFNGVQITKLKGK 74 (258)
T ss_pred ceEEEeeeeeecC----CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCc---ceEEecccchhccchH
Confidence 4789999999996 35689999999999999999999999999999999999999875 999999975421
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCC-------chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCC
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPG-------FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-------~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~L 248 (513)
.++.+||++|.+.|.+.++|.+|+..+..-+.+. ...+.+..+-++|+.+|+.+.+.++.+ .|
T Consensus 75 ~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~------~L 148 (258)
T COG3638 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS------TL 148 (258)
T ss_pred HHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc------cC
Confidence 2357999999999999999999998764322211 113455678899999999999888776 99
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (513)
||||+|||+|||||+.+|+|||.|||+++|||.++..||+.|+++++ +|.|||+..|+. +.+.++||||+-|++|+++
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Riigl~~G~iv 227 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRIIGLKAGRIV 227 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhheEecCCcEE
Confidence 99999999999999999999999999999999999999999999985 599999999987 5889999999999999999
Q ss_pred EEeChHHHHH
Q 010314 328 FFGETLACLQ 337 (513)
Q Consensus 328 ~~G~~~~~~~ 337 (513)
|+|++.++-+
T Consensus 228 fDg~~~el~~ 237 (258)
T COG3638 228 FDGPASELTD 237 (258)
T ss_pred EeCChhhhhH
Confidence 9999988543
No 21
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-49 Score=389.75 Aligned_cols=219 Identities=26% Similarity=0.384 Sum_probs=195.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCCC-
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSEM- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~---~~~~- 179 (513)
|.+.++++++.+. ...+++||++.|+.||++||+|||||||||||++|+|+..|+. |.|.+||+ +...
T Consensus 1 m~i~i~~~~~~~~-----~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~---G~I~~~~~~l~D~~~~ 72 (345)
T COG1118 1 MSIRINNVKKRFG-----AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDA---GRIRLNGRVLFDVSNL 72 (345)
T ss_pred Cceeehhhhhhcc-----cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCC---ceEEECCEeccchhcc
Confidence 4578888888874 4568999999999999999999999999999999999999986 99999998 4322
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCC-CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..++||||+|+..+|++|||.+|+.|+...+.. ....+.+.++.++|+.+.|+++.++ ||.+|||||||||
T Consensus 73 ~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~r------yP~QLSGGQrQRV 146 (345)
T COG1118 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADR------YPAQLSGGQRQRV 146 (345)
T ss_pred chhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhc------CchhcChHHHHHH
Confidence 346899999999999999999999999866521 1224577889999999999999887 6779999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
++||||+.+|++|+||||+++||...+.++.+.|+++.++ |.|+|++||+. +++.++||||++|++|+|...|+++++
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999999876 99999988886 689999999999999999999999998
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
.+
T Consensus 226 ~~ 227 (345)
T COG1118 226 YD 227 (345)
T ss_pred hc
Confidence 65
No 22
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.2e-49 Score=382.43 Aligned_cols=217 Identities=27% Similarity=0.401 Sum_probs=187.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--C
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--Y 181 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--~ 181 (513)
..++++|+++.|.+ . ++|+||||.+++|++++|+||||||||||+|+|+|+++|.. |+|.++|++.... .
T Consensus 3 ~~i~v~nl~v~y~~----~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~---G~i~~~g~~~~~~~~~ 74 (254)
T COG1121 3 PMIEVENLTVSYGN----R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS---GEIKIFGKPVRKRRKR 74 (254)
T ss_pred cEEEEeeeEEEECC----E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCc---ceEEEccccccccccC
Confidence 46899999999952 2 59999999999999999999999999999999999999975 9999999875433 3
Q ss_pred ceEEEEcCCc---ccCCCCCHHHHHHHHHHhcCC---CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 182 GSYGFVERET---TLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 182 ~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..||||||.. .-|| +||+|.+..+...+.. ...+..++.++++|+.+|+.+++++.++ +|||||+||
T Consensus 75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~------~LSGGQ~QR 147 (254)
T COG1121 75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG------ELSGGQKQR 147 (254)
T ss_pred CeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc------ccCcHHHHH
Confidence 5799999954 3343 6999999776332211 1113446789999999999999999887 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|.|||||+.+|++|+|||||+|+|+.++..|+++|++|+++|+||++++|+. ..+.++||+|+.|+ +++++.|+++++
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL-~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDL-GLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-HHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 9999999999999999999999999999999999999998899999977776 68999999999995 678899999887
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
..
T Consensus 226 ~~ 227 (254)
T COG1121 226 LT 227 (254)
T ss_pred cC
Confidence 53
No 23
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-49 Score=374.83 Aligned_cols=220 Identities=25% Similarity=0.334 Sum_probs=190.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
+.++++||++.|..+.. ..++|++|||++.+||++||+|+||||||||.++|+|+.+|+. |+|.++|++...
T Consensus 2 ~~l~v~nl~~~y~~~~~-~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~---G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 2 TLLSVRNLSIVYGGGKF-AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS---GSILLDGKPLAPKKRA 77 (252)
T ss_pred ceEEEeceEEEecCCcc-hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCC---ceEEECCcccCccccc
Confidence 46899999999965432 2369999999999999999999999999999999999999975 999999976432
Q ss_pred --CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 --PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 --~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqrq 254 (513)
.++.+.+|||++ .+.|..||++.|..+..... .....+++.++++.+||. .++++ +|++|||||||
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~---~~~~~~~i~~~L~~VgL~~~~l~R------~P~eLSGGQ~Q 148 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG---LSKSQQRIAELLDQVGLPPSFLDR------RPHELSGGQRQ 148 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCC---ccHHHHHHHHHHHHcCCCHHHHhc------CchhcChhHHH
Confidence 246789999996 78999999999988765421 123345599999999996 56666 66799999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||+|||||+.+|++||||||||+||+..+.+|+++|.+++++ +.|+|+++|+. ..+..+||||++|++|++|+.+++.
T Consensus 149 RiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~Vm~~G~ivE~~~~~ 227 (252)
T COG1124 149 RIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAVMDNGQIVEIGPTE 227 (252)
T ss_pred HHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheeeeeCCeEEEeechh
Confidence 999999999999999999999999999999999999999865 88999988775 6899999999999999999999998
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 228 ~l~~ 231 (252)
T COG1124 228 ELLS 231 (252)
T ss_pred hhhc
Confidence 8764
No 24
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-48 Score=361.53 Aligned_cols=216 Identities=29% Similarity=0.385 Sum_probs=195.0
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
+++.+++++|+. ..++++||||+++.||++||+|||||||||+||+|++++.|++ |.|+++|.+... .+
T Consensus 2 l~v~~l~K~y~~----~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~---G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 2 LEVTDLTKSYGS----KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS---GKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred eeeeehhhhccC----HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCC---ceEEEeecccccChHHHh
Confidence 678999999953 3459999999999999999999999999999999999999986 999999976422 24
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhc-CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
+.+|.++.+..++..||++|||.|.+.+. +.. .+.+++++++.+.++|.+++|++++ ++|.||||||+|||
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~--~~~kari~~l~k~l~l~~~~~rRv~------~~S~G~kqkV~iAR 146 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKYFARLNGLSR--KEIKARIAELSKRLQLLEYLDRRVG------EFSTGMKQKVAIAR 146 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHhChHHHHHHHHh------hhchhhHHHHHHHH
Confidence 67999998889999999999998887764 322 3567889999999999999999987 99999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||+++|++++|||||||||..+...+.+.+++++++|++||+++|.. .++..+||+|++|++|++|+.|+.+++..
T Consensus 147 Alvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 147 ALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 99999999999999999999999999999999999999999988775 68999999999999999999999987654
No 25
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.4e-47 Score=406.55 Aligned_cols=270 Identities=24% Similarity=0.295 Sum_probs=218.1
Q ss_pred eeEEecccccccccCCCCcchhhccCCCCCCCCCCcch--hhhhccCCceEEEEeEEEEEeccc------cccceeeeee
Q 010314 58 VRVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGA--AVARKIAGASVVWKDLTVTIKGKR------RYSDKVVKSS 129 (513)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~ls~~~~~~~------~~~~~iL~~v 129 (513)
-.++|.|++.+.+.+|.|||++.+.++.+......... ..........++++||++.|..++ .....+++||
T Consensus 231 G~iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~V 310 (539)
T COG1123 231 GEIVETGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDV 310 (539)
T ss_pred CEEEEecCHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeee
Confidence 34799999999999999999999976533221110000 000000346789999999997532 2345799999
Q ss_pred eeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-------CCCce--EEEEcCCcccCCCCCHH
Q 010314 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-------MPYGS--YGFVERETTLIGSLTVR 200 (513)
Q Consensus 130 s~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-------~~~~~--~~yv~Q~~~l~~~lTV~ 200 (513)
||.+++||++||+|+||||||||.|+|+|+.+|++ |+|.++|.+.. ..++. +.|+.+...|.|.+||+
T Consensus 311 Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~---G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~ 387 (539)
T COG1123 311 SFDLREGETLGLVGESGSGKSTLARILAGLLPPSS---GSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVG 387 (539)
T ss_pred eeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHH
Confidence 99999999999999999999999999999999975 99999997621 11123 45555556899999999
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 010314 201 EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279 (513)
Q Consensus 201 E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD 279 (513)
++|..+..........+.++++.++++.++|.. ++++ ||++||||||||++|||||+.+|++|++|||||+||
T Consensus 388 ~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~r------yP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLD 461 (539)
T COG1123 388 DILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR------YPHELSGGQRQRVAIARALALEPKLLILDEPVSALD 461 (539)
T ss_pred HHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhc------CchhcCcchhHHHHHHHHHhcCCCEEEecCCccccC
Confidence 999887765443333456678999999999985 5555 778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 280 SVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 280 ~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
+..+.+|+++|++|+++ |.|.|+++|+. ..+..+||||++|++|++|+.|+.++++.
T Consensus 462 vsvqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~drv~vm~~G~iVE~G~~~~v~~ 519 (539)
T COG1123 462 VSVQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIADRVAVMYDGRIVEEGPTEKVFE 519 (539)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhCceEEEEECCeEEEeCCHHHHhc
Confidence 99999999999999865 99999988875 68999999999999999999998887754
No 26
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-48 Score=362.23 Aligned_cols=222 Identities=25% Similarity=0.360 Sum_probs=194.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCCC-
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEMP- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~~- 180 (513)
..++++||++.|. .+++|+|||+.|++++++|||||||||||||||+|..+.. +...++|+|.++|+++..+
T Consensus 6 ~~~~~~~l~~yYg-----~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 6 PAIEVRDLNLYYG-----DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred ceeEecceeEEEC-----chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 4689999999994 5689999999999999999999999999999999998854 3345789999999886432
Q ss_pred ------CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHH
Q 010314 181 ------YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 181 ------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqr 253 (513)
++++|+|||.+.-|| +|++||+.|+.++..... .+.++.|+..|+...|. +..|++ +..+.+|||||+
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL---~~sa~~LSGGQQ 155 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRL---HKSALGLSGGQQ 155 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHh---hCCccCCChhHH
Confidence 367999999999998 899999999987764433 56678899999999996 456665 346779999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+|||.+..+|-++|.+|+ +.-|||++||.+ ..+.+++|+..++..|++|++|+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnm-qQAaRvSD~taFf~~G~LvE~g~T~ 233 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNM-QQAARVSDYTAFFYLGELVEFGPTD 233 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCH-HHHHHHhHhhhhhcccEEEEEcCHH
Confidence 99999999999999999999999999999999999999998 568999888876 6899999999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 234 ~iF~ 237 (253)
T COG1117 234 KIFT 237 (253)
T ss_pred hhhc
Confidence 8753
No 27
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=7.5e-47 Score=390.09 Aligned_cols=219 Identities=22% Similarity=0.291 Sum_probs=190.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++||++.|..+. ..+.+|+||||++++||+++|+||||||||||+|+|+|+++|++ |+|.++|.++..
T Consensus 2 I~~~~lsk~y~~~~-~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~---G~I~i~G~~i~~~~~~~l 77 (343)
T TIGR02314 2 IKLSNITKVFHQGT-KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTS---GSVIVDGQDLTTLSNSEL 77 (343)
T ss_pred EEEEEEEEEECCCC-cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHHH
Confidence 78999999995321 12469999999999999999999999999999999999999975 999999987532
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.++.++|++|+..+++.+||+||+.++...... ...+.++++.++++.+||.+..++. +.+|||||||||+
T Consensus 78 ~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~v~e~l~~vgL~~~~~~~------~~~LSgGqkQRV~ 150 (343)
T TIGR02314 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT-PKDEIKRKVTELLALVGLGDKHDSY------PSNLSGGQKQRVA 150 (343)
T ss_pred HHHhcCEEEEECCccccccCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhhCC------hhhCCHHHHHHHH
Confidence 134799999999999999999999887643211 1234556789999999999888774 4599999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||++||+.++..++++|++++++ |.|||+++|+. +.+.++||+|++|++|++++.|++.+++
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999865 99999988886 5788999999999999999999998875
No 28
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=8.7e-47 Score=385.12 Aligned_cols=218 Identities=27% Similarity=0.352 Sum_probs=192.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++||++.|. .+.+|+||||++++||++||+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 6 ~~i~i~~l~k~~~-----~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~---G~v~i~G~~~~~~~~~ 77 (306)
T PRK13537 6 APIDFRNVEKRYG-----DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDA---GSISLCGEPVPSRARH 77 (306)
T ss_pred ceEEEEeEEEEEC-----CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEecccchHH
Confidence 3689999999994 3569999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.++.+||++|++.+++.+||+||+.+.+.+... ...+..++++++++.++|.+..++.++ .|||||||||+||
T Consensus 78 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrl~la 150 (306)
T PRK13537 78 ARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGL-SAAAARALVPPLLEFAKLENKADAKVG------ELSGGMKRRLTLA 150 (306)
T ss_pred HHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchHhcCchh------hCCHHHHHHHHHH
Confidence 135799999999999999999999876554321 112344568899999999988888665 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
+||+.+|++|||||||+|||+.++..++++|++++++|+|||+++|+. .++.++||+|++|++|++++.|+++++..
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999987799999988886 58999999999999999999999988754
No 29
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-46 Score=390.48 Aligned_cols=218 Identities=24% Similarity=0.397 Sum_probs=192.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.++++||++.|.+ .+.+|+|+||++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++.. ..
T Consensus 3 ~l~i~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~---G~I~~~g~~i~~~~~~~ 75 (356)
T PRK11650 3 GLKLQAVRKSYDG----KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITS---GEIWIGGRVVNELEPAD 75 (356)
T ss_pred EEEEEeEEEEeCC----CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHH
Confidence 4899999999831 3469999999999999999999999999999999999999975 999999987532 23
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++||+|++.+||++||+||+.|+...+.. ...+..++++++++.++|.++.++.+ ++|||||||||+||||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGq~QRvalARA 148 (356)
T PRK11650 76 RDIAMVFQNYALYPHMSVRENMAYGLKIRGM-PKAEIEERVAEAARILELEPLLDRKP------RELSGGQRQRVAMGRA 148 (356)
T ss_pred CCEEEEeCCccccCCCCHHHHHHhHHhhcCC-CHHHHHHHHHHHHHHcCChhHhhCCh------hhCCHHHHHHHHHHHH
Confidence 5799999999999999999999988653321 11344567899999999999888754 5999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||++||+.++..+.+.|+++.++ |.|+|++||+. .++..+||++++|++|+++..|+++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 149 IVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999865 89999998887 58999999999999999999999988754
No 30
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.7e-46 Score=389.45 Aligned_cols=217 Identities=24% Similarity=0.349 Sum_probs=192.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.++++||++.|. .+.+|+|+||++++||+++|+|||||||||||++|+|+.+|+. |+|.++|++... ..
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~---G~I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 4 YLSIDNIRKRFG-----AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTA---GTIYQGGRDITRLPPQK 75 (353)
T ss_pred EEEEEEEEEEeC-----CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999994 3469999999999999999999999999999999999999975 999999987532 23
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|+..+||++||+||+.|+...+.. ...+.+++++++++.++|.++.++. +++|||||||||+||||
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~-~~~~~~~~~~~~l~~l~L~~~~~~~------~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGM-GRAEVAERVAELLDLVGLPGSERKY------PGQLSGGQQQRVALARA 148 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCCchhhCC------hhhCCHHHHHHHHHHHH
Confidence 6799999999999999999999998654321 1234567899999999999988875 45999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|+++|+. .++..+||+|++|++|+++..|+++++..
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999765 89999988887 58999999999999999999999988764
No 31
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-46 Score=368.58 Aligned_cols=216 Identities=26% Similarity=0.366 Sum_probs=185.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~~ 72 (235)
T cd03261 1 IELRGLTKSFG-----GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS---GEVLIDGEDISGLSEAEL 72 (235)
T ss_pred CeEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccChhhH
Confidence 46899999984 3469999999999999999999999999999999999999875 999999986432
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++.+||.||+.+...........+..+++.++++.++|.+..++.+ .+|||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~ 146 (235)
T cd03261 73 YRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP------AELSGGMKKRVA 146 (235)
T ss_pred HHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHHH
Confidence 134699999999999999999999876432211111233456888999999988777755 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|+. .++..+||++++|++|++++.|+++++.
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 999999999999999999999999999999999999864 89999988886 5788999999999999999999887653
No 32
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-46 Score=388.09 Aligned_cols=218 Identities=25% Similarity=0.432 Sum_probs=193.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~ 180 (513)
..++++||++.|. .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|.++.. .
T Consensus 5 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~~~g~~i~~~~~~ 76 (351)
T PRK11432 5 NFVVLKNITKRFG-----SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTE---GQIFIDGEDVTHRSIQ 76 (351)
T ss_pred cEEEEEeEEEEEC-----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHH
Confidence 3689999999994 3469999999999999999999999999999999999999975 999999987532 2
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.++||+|+..+||++||+||+.|+...+.. ...+..++++++++.++|.++.++. +++|||||||||+|||
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~-~~~~~~~~v~~~l~~~gl~~~~~r~------~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGV-PKEERKQRVKEALELVDLAGFEDRY------VDQISGGQQQRVALAR 149 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCC-CHHHHHHHHHHHHHHcCCchhhcCC------hhhCCHHHHHHHHHHH
Confidence 36799999999999999999999998654321 1234567899999999999888774 4599999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||+.+|+||||||||++||+..+..+.+.|+++.++ |.|+|+++|+. .++..+||+|++|++|+++..|+++++..
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999765 89999988887 58999999999999999999999988753
No 33
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=4e-47 Score=350.04 Aligned_cols=211 Identities=24% Similarity=0.315 Sum_probs=188.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++|+|+++.|.+ ++.+|+||||.+++||++-|+||||||||||||+|.+..+|+. |+|+++|.++..
T Consensus 2 I~f~~V~k~Y~~----g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~~dl~~l~~~~i 74 (223)
T COG2884 2 IRFENVSKAYPG----GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNGHDLSRLKGREI 74 (223)
T ss_pred eeehhhhhhcCC----CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECCeeccccccccc
Confidence 689999999964 4569999999999999999999999999999999999999985 999999987421
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.+++||+||||..|.+..||+||+.|+...... ...+.+++|.++|+.+||.+.++.+ |.+|||||+|||+
T Consensus 75 P~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~-~~~~i~~rV~~~L~~VgL~~k~~~l------P~~LSGGEQQRva 147 (223)
T COG2884 75 PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGK-PPREIRRRVSEVLDLVGLKHKARAL------PSQLSGGEQQRVA 147 (223)
T ss_pred chhhheeeeEeeeccccccchHhhhhhhhhhccCC-CHHHHHHHHHHHHHHhccchhhhcC------ccccCchHHHHHH
Confidence 246899999999999999999999998765422 2256778899999999999888775 4599999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||++.+|+|||.||||.+|||..+.+|++++.++...|+||++.||+. ..+..+-.|++.|++|+++.+..
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~-~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL-ELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH-HHHHhccCcEEEEeCCEEEeccc
Confidence 99999999999999999999999999999999999999999999988875 57888889999999999987643
No 34
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=5.1e-46 Score=386.77 Aligned_cols=219 Identities=24% Similarity=0.326 Sum_probs=192.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.++++||++.|. .+.+|+|+|+++.+||+++|+|||||||||||++|+|+.+|++ .+|+|.++|++... ..
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~-~~G~i~~~g~~~~~~~~~~ 78 (362)
T TIGR03258 5 GIRIDHLRVAYG-----ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAG-LTGRIAIADRDLTHAPPHK 78 (362)
T ss_pred EEEEEEEEEEEC-----CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-CCEEEEECCEECCCCCHHH
Confidence 589999999994 3469999999999999999999999999999999999999862 13999999987532 23
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++||+|+..+||++||+||+.|+...+.. ...+.+++++++++.++|.++.++.+ ++|||||||||+||||
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~-~~~~~~~~v~~~l~~~gL~~~~~~~~------~~LSgGq~QRvaLARA 151 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKM-PKADIAERVADALKLVGLGDAAAHLP------AQLSGGMQQRIAIARA 151 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCCchhhCCh------hhCCHHHHHHHHHHHH
Confidence 5799999999999999999999988654321 12344567899999999999888754 5999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||+|||+..+.++.+.|+++.++ |.|+|++||+. .++..+||+|++|++|+++..|+++++..
T Consensus 152 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 152 IAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999875 78999988886 58899999999999999999999998754
No 35
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=6e-46 Score=385.41 Aligned_cols=219 Identities=24% Similarity=0.354 Sum_probs=191.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~ 180 (513)
|.|+++||++.|. .+.+|+|+||++++||+++|+|||||||||||++|+|+++|++ |+|+++|++... .
T Consensus 1 ~~L~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~i~g~~i~~~~~~ 72 (353)
T PRK10851 1 MSIEIANIKKSFG-----RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS---GHIRFHGTDVSRLHAR 72 (353)
T ss_pred CEEEEEEEEEEeC-----CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHH
Confidence 3589999999984 3469999999999999999999999999999999999999875 999999987532 2
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcC---CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQL---PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.+.++|++|++.+||.+||+||+.|+..... .....+..+++.++++.++|.++.++. +.+|||||||||+
T Consensus 73 ~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~------~~~LSgGq~QRva 146 (353)
T PRK10851 73 DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY------PAQLSGGQKQRVA 146 (353)
T ss_pred HCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC------hhhCCHHHHHHHH
Confidence 3579999999999999999999998754311 111134456789999999999888775 4599999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..+.+.|+++.++ |.|+|+++|+. .++..+||+|++|++|++++.|+++++.
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999865 89999988886 5899999999999999999999998875
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 226 ~ 226 (353)
T PRK10851 226 R 226 (353)
T ss_pred h
Confidence 4
No 36
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=8.2e-46 Score=382.57 Aligned_cols=219 Identities=26% Similarity=0.332 Sum_probs=192.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++||++.|. .+.+|+||||+|++|+++||+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 40 ~~i~i~nl~k~y~-----~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~---G~i~i~G~~~~~~~~~ 111 (340)
T PRK13536 40 VAIDLAGVSKSYG-----DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDA---GKITVLGVPVPARARL 111 (340)
T ss_pred eeEEEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCc---eEEEECCEECCcchHH
Confidence 4699999999994 3469999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
..+.+||++|++.+++.+||.||+.+...+.. ....+..++++++++.++|.+..++.++ +|||||||||+||
T Consensus 112 ~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~L~~~~~~~~~------~LS~G~kqrv~lA 184 (340)
T PRK13536 112 ARARIGVVPQFDNLDLEFTVRENLLVFGRYFG-MSTREIEAVIPSLLEFARLESKADARVS------DLSGGMKRRLTLA 184 (340)
T ss_pred HhccEEEEeCCccCCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhCCChh------hCCHHHHHHHHHH
Confidence 13569999999999999999999987554331 1112334567889999999988888665 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (513)
+||+.+|++|||||||+|||+.++..++++|++++++|+|||+++|+. +++.++||+|++|++|++++.|+++++...
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999999999987899999988876 589999999999999999999999987653
No 37
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.2e-45 Score=385.52 Aligned_cols=218 Identities=25% Similarity=0.357 Sum_probs=192.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~ 180 (513)
..|+++||++.|. .+.+|+++||.+++||+++|+|||||||||||++|+|+++|+. |+|.++|++... .
T Consensus 13 ~~L~l~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~---G~I~~~g~~i~~~~~~ 84 (375)
T PRK09452 13 PLVELRGISKSFD-----GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS---GRIMLDGQDITHVPAE 84 (375)
T ss_pred ceEEEEEEEEEEC-----CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHH
Confidence 4689999999984 3469999999999999999999999999999999999999975 999999987532 2
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.++|++|++.+||++||.||+.|+...+.. ...+..++++++++.++|.++.++.+ .+|||||||||+|||
T Consensus 85 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~p------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKT-PAAEITPRVMEALRMVQLEEFAQRKP------HQLSGGQQQRVAIAR 157 (375)
T ss_pred HCCEEEEecCcccCCCCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHHHHHHH
Confidence 36799999999999999999999987643311 11234567899999999999888754 599999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||+.+|+||||||||++||+..+..+.+.|+++.++ |.|+|++||+. .++..+||+|++|++|+++..|++.++..
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999865 89999988886 58999999999999999999999988754
No 38
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-46 Score=343.88 Aligned_cols=213 Identities=27% Similarity=0.394 Sum_probs=185.4
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
+.++++.++|.. .=-.+++.|.+||++||+|||||||||||++|+|+..|.+ |+|++||.+... ..+
T Consensus 2 l~L~~V~~~y~~-------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~---G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYGH-------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPAS---GEILINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeCc-------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCC---ceEEEcCeecCcCCcccC
Confidence 456777777742 2345788899999999999999999999999999999975 999999987432 236
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++.+||+..||.++||.+|+-++..-.+.-. ++.+++++.++..+||.++.+++++ +|||||||||++||+|
T Consensus 72 PVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~-a~~r~~v~~aa~~vGl~~~~~RLP~------~LSGGqRQRvALARcl 144 (231)
T COG3840 72 PVSMLFQENNLFAHLTVAQNIGLGLSPGLKLN-AEQREKVEAAAAQVGLAGFLKRLPG------ELSGGQRQRVALARCL 144 (231)
T ss_pred ChhhhhhccccchhhhhhhhhcccCCcccccC-HHHHHHHHHHHHHhChhhHhhhCcc------ccCchHHHHHHHHHHH
Confidence 79999999999999999999977543211111 4567789999999999999999766 9999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+.+-+||+||||+|+|||.-+.+++.++.++++ ++.|++++|||+. ++.+++|+++++++|+|.+.|+.++.+
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 999999999999999999999999999999985 5899999999984 799999999999999999999988765
No 39
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-46 Score=369.07 Aligned_cols=227 Identities=24% Similarity=0.302 Sum_probs=193.7
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-C-CCCceeEEEECCEeCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-H-SARMYGEVFVNGAKSE----- 178 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~-~-~~~~~G~I~i~G~~~~----- 178 (513)
|+++||++.|.... +..++++||||++++||++||+|+||||||||.++|+|+++ + ....+|+|.++|+++-
T Consensus 2 L~v~nL~v~f~~~~-g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 2 LEVKNLSVSFPTDA-GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred ceEeeeEEEEecCC-ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 68999999996532 24579999999999999999999999999999999999998 4 3345799999998531
Q ss_pred ----CCCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCC-chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH
Q 010314 179 ----MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 179 ----~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG 251 (513)
.+.+.++|+||++ .|.|.+||.+.+......+... ..++..+++.++|+.+||.+-.... +.||++||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~---~~YPhelSGG 157 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRL---KSYPHELSGG 157 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHH---hhCCcccCCc
Confidence 1235799999995 7899999999998776654322 2245567899999999998654332 3489999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|||||.||.||+.+|+|||+||||++||...+.+|+++|++|++ .|.++|++||+. ..+.++||||+||+.|++|+.|
T Consensus 158 MrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~g 236 (316)
T COG0444 158 MRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVEEG 236 (316)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEeC
Confidence 99999999999999999999999999999999999999999986 599999988876 6899999999999999999999
Q ss_pred ChHHHHH
Q 010314 331 ETLACLQ 337 (513)
Q Consensus 331 ~~~~~~~ 337 (513)
++++++.
T Consensus 237 ~~~~i~~ 243 (316)
T COG0444 237 PVEEIFK 243 (316)
T ss_pred CHHHHhc
Confidence 9998764
No 40
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.2e-45 Score=374.47 Aligned_cols=218 Identities=25% Similarity=0.318 Sum_probs=189.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
+.++++||++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 3 ~~i~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~ 74 (303)
T TIGR01288 3 VAIDLVGVSKSYG-----DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDR---GKITVLGEPVPSRARL 74 (303)
T ss_pred cEEEEEeEEEEeC-----CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECcccHHH
Confidence 4689999999984 3469999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.++.++|++|++.+++.+||.||+.+...... ....+..++++++++.++|.+..++.++ +|||||||||+||
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~ll~~~~l~~~~~~~~~------~LSgG~~qrv~la 147 (303)
T TIGR01288 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG-MSTREIEAVIPSLLEFARLESKADVRVA------LLSGGMKRRLTLA 147 (303)
T ss_pred HhhcEEEEeccccCCcCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCChhHhcCchh------hCCHHHHHHHHHH
Confidence 13569999999999999999999986543321 1112334567889999999988877654 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. .++.++||++++|++|++++.|+++++..
T Consensus 148 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 148 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999987899999988886 58889999999999999999999988754
No 41
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.8e-45 Score=361.15 Aligned_cols=218 Identities=23% Similarity=0.340 Sum_probs=187.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~ 180 (513)
|.++++||++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 1 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~ 72 (239)
T cd03296 1 MSIEVRNVSKRFG-----DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDS---GTILFGGEDATDVPVQ 72 (239)
T ss_pred CEEEEEeEEEEEC-----CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCCcc
Confidence 3589999999994 2469999999999999999999999999999999999998874 999999987432 1
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCC---CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.+.++|++|++.+++.+||.||+.+....... ....+..+.++++++.++|.+..++.+ .+|||||||||+
T Consensus 73 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~ 146 (239)
T cd03296 73 ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP------AQLSGGQRQRVA 146 (239)
T ss_pred ccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh------hhCCHHHHHHHH
Confidence 35699999999999999999999876433211 011223456788999999988877755 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..+.++|++++++ |+|||+++|+. .++..+||++++|++|++++.|+++++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999999999999999999999999865 89999988887 5788999999999999999999887653
No 42
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-46 Score=363.77 Aligned_cols=218 Identities=26% Similarity=0.369 Sum_probs=191.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE----- 178 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~----- 178 (513)
+.+.++|+++.|.+. ..+|+++|+.+++|+.++|+|+||||||||+++|+|+++|.. |+|.++|.+..
T Consensus 2 ~~i~~~~l~~~y~~~----~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~---G~v~~~g~~~~~~~~~ 74 (235)
T COG1122 2 RMIEAENLSFRYPGR----KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTS---GEVLVDGLDTSSEKSL 74 (235)
T ss_pred ceEEEEEEEEEcCCC----ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCC---CEEEECCeeccchhhH
Confidence 357899999999642 579999999999999999999999999999999999999975 99999998743
Q ss_pred -CCCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 179 -MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 179 -~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..++.+|||+|++ +++. -||.|.+.|+.... +...++.+++++++++.+|+.+++++ .|+.||||||||
T Consensus 75 ~~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~-g~~~~e~~~rv~~~l~~vgl~~~~~r------~p~~LSGGqkqR 146 (235)
T COG1122 75 LELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENL-GLPREEIEERVAEALELVGLEELLDR------PPFNLSGGQKQR 146 (235)
T ss_pred HHhhcceEEEEECccccccc-CcHHHHHhhchhhc-CCCHHHHHHHHHHHHHHcCchhhccC------CccccCCcceee
Confidence 2246799999986 6664 59999999986532 22224577889999999999999877 456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+||.+|+.+|++|+|||||||||+..+..+++++++|.++ |+|+|+++|+. +.+..+||++++|++|++++.|++.+
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G~i~~~g~p~~ 225 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAE 225 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECCEEeecCCHHH
Confidence 99999999999999999999999999999999999999977 78999988886 68999999999999999999999887
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
++.
T Consensus 226 i~~ 228 (235)
T COG1122 226 IFN 228 (235)
T ss_pred Hhh
Confidence 765
No 43
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-45 Score=357.37 Aligned_cols=213 Identities=27% Similarity=0.366 Sum_probs=184.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 1 i~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (220)
T cd03265 1 IEVENLVKKYG-----DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS---GRATVAGHDVVREPREVR 72 (220)
T ss_pred CEEEEEEEEEC-----CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEecCcChHHHh
Confidence 46899999984 3469999999999999999999999999999999999998875 999999976432 12
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+||+||+.+....... ...+..+.++++++.++|.+..++.+ ..|||||||||+||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qr~~la~a 145 (220)
T cd03265 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGV-PGAERRERIDELLDFVGLLEAADRLV------KTYSGGMRRRLEIARS 145 (220)
T ss_pred hcEEEecCCccccccCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHhhCCh------hhCCHHHHHHHHHHHH
Confidence 4689999999999999999999876543211 11234456889999999988877755 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|+. .++..+||++++|++|+++..|++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999999999999999999876 89999988886 57889999999999999999888764
No 44
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-45 Score=382.37 Aligned_cols=218 Identities=22% Similarity=0.346 Sum_probs=192.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---C
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---P 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~ 180 (513)
..|+++|+++.|. ...+|+|+||++++||+++|+|||||||||||++|+|+.+|+. |+|.++|++... .
T Consensus 18 ~~l~l~~v~~~~~-----~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~---G~I~i~g~~i~~~~~~ 89 (377)
T PRK11607 18 PLLEIRNLTKSFD-----GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTA---GQIMLDGVDLSHVPPY 89 (377)
T ss_pred ceEEEEeEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHH
Confidence 4699999999984 3469999999999999999999999999999999999999975 999999987532 2
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.+||++|++.+||++||.||+.|+...+.. ...+..+++.++++.++|.++.++. +++|||||||||+|||
T Consensus 90 ~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~-~~~~~~~~v~~~l~~l~L~~~~~~~------~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKL-PKAEIASRVNEMLGLVHMQEFAKRK------PHQLSGGQRQRVALAR 162 (377)
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhcCC------hhhCCHHHHHHHHHHH
Confidence 35799999999999999999999987654321 1234556789999999999888774 4599999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||+.+|+||||||||++||+..+..+.+.|+++.+ .|.|+|++||+. .++..+||++++|++|+++..|+++++..
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999875 489999988886 58999999999999999999999988754
No 45
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-45 Score=355.82 Aligned_cols=209 Identities=28% Similarity=0.416 Sum_probs=179.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03259 1 LELKGLSKTYG-----SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDS---GEILIDGRDVTGVPPERR 72 (213)
T ss_pred CeeeeeEEEeC-----CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEcCcCchhhc
Confidence 46899999984 2469999999999999999999999999999999999999875 999999987532 234
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+||+||+.+....... ......+.+.++++.++|.+..++.+ ..|||||||||+|||||
T Consensus 73 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrl~la~al 145 (213)
T cd03259 73 NIGMVFQDYALFPHLTVAENIAFGLKLRGV-PKAEIRARVRELLELVGLEGLLNRYP------HELSGGQQQRVALARAL 145 (213)
T ss_pred cEEEEcCchhhccCCcHHHHHHhHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhcCh------hhCCHHHHHHHHHHHHH
Confidence 699999999999999999999876432211 11233456889999999988877755 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
+.+|+||||||||+|||+.++..+++.|+++++ .|+|||+++|++ .++.++||++++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999986 489999988886 5788999999999999998765
No 46
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-45 Score=356.20 Aligned_cols=215 Identities=29% Similarity=0.374 Sum_probs=183.4
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (513)
++++|+++.|.+.. ..+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+.....+.++
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGGG-GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTS---GEVLVDGEPVTGPGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCCC-cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECccccCcEE
Confidence 46899999985311 11469999999999999999999999999999999999998874 999999987644446799
Q ss_pred EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
|++|++.+++.+||+||+.+....... ......+.+.++++.++|.+..++.+ ..|||||||||+|||||+.+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGV-PKAEARERAEELLELVGLSGFENAYP------HQLSGGMRQRVALARALAVD 149 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhCCc------ccCCHHHHHHHHHHHHHHcC
Confidence 999999999989999999876543211 11233456889999999988877755 49999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEe--CCeEEEEeCh
Q 010314 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGET 332 (513)
Q Consensus 266 P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~--~G~iv~~G~~ 332 (513)
|++|||||||+|||+.++..+++.|+++.+ .|+|||+++|++ .++..+||++++|+ +|++++.++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999965 489999988887 47889999999999 7999988765
No 47
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.9e-45 Score=361.34 Aligned_cols=216 Identities=24% Similarity=0.328 Sum_probs=185.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++|+++.|. .+.+|+++||++++|++++|+||||||||||+++|+|+++|.+ |+|.++|.+....
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (236)
T cd03219 1 LEVRGLTKRFG-----GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTS---GSVLFDGEDITGLPPHEI 72 (236)
T ss_pred CeeeeeEEEEC-----CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---ceEEECCEECCCCCHHHH
Confidence 46899999984 2469999999999999999999999999999999999998874 9999999875321
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCC---------chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPG---------FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~---------~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSG 250 (513)
...++|++|++.+++.+||+||+.+........ ...+..+.+.++++.++|.+..++.+ ++|||
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSg 146 (236)
T cd03219 73 ARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA------GELSY 146 (236)
T ss_pred HhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh------hhCCH
Confidence 235899999999999999999998765432111 11233456889999999988777654 49999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++.|+|||+++|+. +++..+||++++|++|++++.|
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~ 225 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEG 225 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeec
Confidence 999999999999999999999999999999999999999999987789999988887 5788999999999999999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
+++++.
T Consensus 226 ~~~~~~ 231 (236)
T cd03219 226 TPDEVR 231 (236)
T ss_pred CHHHhc
Confidence 887653
No 48
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.6e-45 Score=357.26 Aligned_cols=207 Identities=24% Similarity=0.301 Sum_probs=178.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|.+. .+.+|+++||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 2 IRFEQVSKAYPGG---HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTR---GKIRFNGQDLTRLRGREI 75 (216)
T ss_pred eEEEEEEEEecCC---CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEehhhcChhHH
Confidence 6899999998421 2369999999999999999999999999999999999999875 999999986531
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++.+||.||+.+....... ...+..+++.++++.++|.+..++.+ .+|||||||||+
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~ 148 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGV-PPRDANERVSAALEKVGLEGKAHALP------MQLSGGEQQRVA 148 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHHH
Confidence 124689999999999999999999886543211 11234567889999999988877754 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|||||+.+|+||||||||+|||+.++..+.+.|++++++|.|||+++|++ +.+..+||++++|++|++
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999987789999988886 578889999999999974
No 49
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-45 Score=382.62 Aligned_cols=217 Identities=28% Similarity=0.412 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.++++||++.|. .+.+|+|+||++++||+++|+|||||||||||++|+|+++|++ |+|.++|++... ..
T Consensus 3 ~l~i~~l~~~~~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~---G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 3 SVTLRNVTKAYG-----DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITS---GDLFIGEKRMNDVPPAE 74 (369)
T ss_pred EEEEEEEEEEeC-----CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHhH
Confidence 489999999984 3469999999999999999999999999999999999999875 999999987532 23
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|+..+++.+||+||+.|....+.. ...+..++++++++.++|.+..++.+ .+|||||||||+||||
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~lgL~~~~~~~~------~~LSgGq~QRvaLAra 147 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGA-KKEEINQRVNQVAEVLQLAHLLDRKP------KALSGGQRQRVAIGRT 147 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhcCC-CHHHHHHHHHHHHHHcCChhhhcCCh------hhCCHHHHHHHHHHHH
Confidence 5699999999999999999999887643311 11234567899999999998887755 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||+|||+.++..+++.|+++.++ |.|+|+++|+. .++..+||++++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999765 89999988886 57899999999999999999999988753
No 50
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-46 Score=355.78 Aligned_cols=219 Identities=25% Similarity=0.331 Sum_probs=193.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..+++++|+++| ++-.+++||||++++||+++||||||||||||+|+|+|+++|++ |+|.++|+++...
T Consensus 3 ~lL~v~~l~k~F-----GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~---G~v~~~G~~it~l~p~ 74 (250)
T COG0411 3 PLLEVRGLSKRF-----GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS---GTVIFRGRDITGLPPH 74 (250)
T ss_pred ceeeeccceeec-----CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCC---ceEEECCcccCCCCHH
Confidence 357899999999 46789999999999999999999999999999999999999986 9999999976431
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhc--------CCCc---hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCC
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQ--------LPGF---FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~--------~~~~---~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~ 246 (513)
+..++.-||...+|+.|||.||+..++..+ .+.. ..+..++..++|+.+||.+.+++..+
T Consensus 75 ~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~------ 148 (250)
T COG0411 75 RIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG------ 148 (250)
T ss_pred HHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh------
Confidence 245788899999999999999998875422 2221 23456778899999999999999876
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
+||+||||||.|||||+.+|++|+||||.+||.+....++.++|++++++ |.||+++-|+. ..++.+||||+||+.|+
T Consensus 149 ~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM-~~Vm~l~dri~Vl~~G~ 227 (250)
T COG0411 149 NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM-KLVMGLADRIVVLNYGE 227 (250)
T ss_pred cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc-HHHhhhccEEEeccCCc
Confidence 99999999999999999999999999999999999999999999999974 68999976665 68999999999999999
Q ss_pred EEEEeChHHHHH
Q 010314 326 TLFFGETLACLQ 337 (513)
Q Consensus 326 iv~~G~~~~~~~ 337 (513)
+++.|+|+++..
T Consensus 228 ~IAeG~P~eV~~ 239 (250)
T COG0411 228 VIAEGTPEEVRN 239 (250)
T ss_pred CcccCCHHHHhc
Confidence 999999999764
No 51
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=4.9e-45 Score=357.46 Aligned_cols=215 Identities=23% Similarity=0.361 Sum_probs=185.1
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++||++.|. .+.+|+|+||.+++|++++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03218 1 LRAENLSKRYG-----KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDS---GKILLDGQDITKLPMHKR 72 (232)
T ss_pred CeEEEEEEEeC-----CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccCCHhHH
Confidence 46899999984 3469999999999999999999999999999999999999875 999999986421
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
..+.++|++|++.+++.+||+||+.+....... ........++++++.+++.+..++.+ +.|||||||||+||
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~la 145 (232)
T cd03218 73 ARLGIGYLPQEASIFRKLTVEENILAVLEIRGL-SKKEREEKLEELLEEFHITHLRKSKA------SSLSGGERRRVEIA 145 (232)
T ss_pred HhccEEEecCCccccccCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHHHHH
Confidence 123589999999999999999999876433211 11233456789999999988777754 49999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||++++|++|+++..|+.+++.
T Consensus 146 ~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 146 RALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 999999999999999999999999999999999987789999988887 4789999999999999999999887653
No 52
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-45 Score=369.38 Aligned_cols=232 Identities=22% Similarity=0.292 Sum_probs=192.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|..+....+.+|+||||++.+||+++|+||||||||||+++|+|+++|++ |+|+++|.+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~~ 78 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE---GKVTVGDIVVSSTSKQKE 78 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCC---cEEEECCEECcccccccc
Confidence 78999999995322122369999999999999999999999999999999999999975 999999987531
Q ss_pred ---CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHH
Q 010314 180 ---PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 180 ---~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqr 253 (513)
..+.++|++|++ .+++ .||.||+.|...... ....+.++++.++++.++|. ++.++. ++.||||||
T Consensus 79 ~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~~LSgGqk 150 (288)
T PRK13643 79 IKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFG-IPKEKAEKIAAEKLEMVGLADEFWEKS------PFELSGGQM 150 (288)
T ss_pred HHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCCChhhccCC------cccCCHHHH
Confidence 124689999986 5665 599999988754321 11134456789999999996 466654 459999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||+|+.+|+||||||||+|||+.++..+.+.|++++++|.|||+++|+. .++..+||+|++|++|++++.|+++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPS 229 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999987799999988886 5788999999999999999999998
Q ss_pred HHHH---HhHhcCCCCCCC
Q 010314 334 ACLQ---HFSNAGFPCPIM 349 (513)
Q Consensus 334 ~~~~---~f~~~g~~~~~~ 349 (513)
+++. .+...|+.+|..
T Consensus 230 ~~~~~~~~~~~~~~~~p~~ 248 (288)
T PRK13643 230 DVFQEVDFLKAHELGVPKA 248 (288)
T ss_pred HHHcCHHHHHHcCCCCChH
Confidence 8753 244556666543
No 53
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-45 Score=377.05 Aligned_cols=219 Identities=23% Similarity=0.299 Sum_probs=188.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++||++.|..+. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 2 i~i~~l~~~y~~~~-~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~---G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 2 IELKNISKVFPQGG-RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTS---GRVLVDGQDLTALSEKEL 77 (343)
T ss_pred EEEEeEEEEeCCCC-CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---eEEEECCEECCcCCHHHH
Confidence 68999999995211 13569999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
++.++|++|++.+++.+||.||+.+....... ...+..+++.++++.+||.+..++.+ .+|||||||||+
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGq~qRv~ 150 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGT-PKAEIKARVTELLELVGLSDKADRYP------AQLSGGQKQRVA 150 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHHHH
Confidence 24699999999999999999999887543311 11234467889999999998877754 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..++++|++++++ |+|||+++|+. .++.++||++++|++|++++.|+++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999765 89999988886 5788999999999999999999988764
No 54
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1e-46 Score=349.67 Aligned_cols=219 Identities=23% Similarity=0.407 Sum_probs=194.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P-- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~-- 180 (513)
..|..+||.++|. +++++++||+.+++||+++|+|||||||||.+.++.|+.+|++ |+|.++|.++.. +
T Consensus 3 ~~L~a~~l~K~y~-----kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~---G~i~ld~~diT~lPm~ 74 (243)
T COG1137 3 STLVAENLAKSYK-----KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS---GKILLDDEDITKLPMH 74 (243)
T ss_pred cEEEehhhhHhhC-----CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCC---ceEEECCcccccCChH
Confidence 3688999999984 5679999999999999999999999999999999999999986 999999987542 1
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc-hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGF-FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~-~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
+..+||++|++.+|..+||+||+......+.... ..+.+.+++++|+.|++.++++.... .||||||+|+
T Consensus 75 ~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~------sLSGGERRR~ 148 (243)
T COG1137 75 KRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAY------SLSGGERRRV 148 (243)
T ss_pred HHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCccc------ccccchHHHH
Confidence 2468999999999999999999987766554222 23455678899999999999988643 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
.|||||+.+|+.|+||||++|+||.+..+|-++++.|++.|..|++|-|.. .+...+|||.+++++|++++.|+++++.
T Consensus 149 EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNV-REtL~i~dRaYIi~~G~vla~G~p~ei~ 227 (243)
T COG1137 149 EIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNV-RETLDICDRAYIISDGKVLAEGSPEEIV 227 (243)
T ss_pred HHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccH-HHHHhhhheEEEEecCeEEecCCHHHHh
Confidence 999999999999999999999999999999999999999999999977765 5889999999999999999999999986
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 228 ~ 228 (243)
T COG1137 228 N 228 (243)
T ss_pred c
Confidence 4
No 55
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.3e-45 Score=368.37 Aligned_cols=264 Identities=24% Similarity=0.301 Sum_probs=222.5
Q ss_pred eeEEecccccccccCCCCcchhhccCCCCCCCCCCcchhhhhccCCceEEEEeEEEEEecccc------ccceeeeeeee
Q 010314 58 VRVEEGGDSINAATTPASPSLSKLNSGSLPSPPLPEGAAVARKIAGASVVWKDLTVTIKGKRR------YSDKVVKSSNG 131 (513)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~~~------~~~~iL~~vs~ 131 (513)
-.++|.|.+...++.|.|||++.|..+.+...+.+... .....++.+|+.+.|+-++. ....++++||+
T Consensus 234 G~ivE~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~-----~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl 308 (534)
T COG4172 234 GEIVETGTTETLFAAPQHPYTRKLLAAEPSGDPPPLPE-----DAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISL 308 (534)
T ss_pred cEEeecCcHHHHhhCCCChHHHHHHhcCCCCCCCCCCC-----CCCceEEecceEEEEecCCccccccchheEEecccee
Confidence 34688999999999999999999987654332222111 13467999999999976532 12469999999
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--------CCceEEEEcCCc--ccCCCCCHHH
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--------PYGSYGFVERET--TLIGSLTVRE 201 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--------~~~~~~yv~Q~~--~l~~~lTV~E 201 (513)
++++||.++|+|+||||||||-.+|.+++++. |+|.|+|+++.. .++.+-.||||+ .|.|.+||.+
T Consensus 309 ~L~~gqTlGlVGESGSGKsTlG~allrL~~s~----G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~q 384 (534)
T COG4172 309 TLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ----GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQ 384 (534)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHhhcCcC----ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHH
Confidence 99999999999999999999999999999875 999999987532 134677888886 7899999999
Q ss_pred HHHHHHHhcCCC-chhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 010314 202 YLYYSALLQLPG-FFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279 (513)
Q Consensus 202 ~l~~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD 279 (513)
.+..+....-+. ...++++++.++|+.+||+. .+++ ||+++|||||||++|||||+.+|++++||||||+||
T Consensus 385 II~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~R------YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD 458 (534)
T COG4172 385 IIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNR------YPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458 (534)
T ss_pred HhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhc------CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhh
Confidence 999887765433 33678889999999999985 4444 888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 280 SVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 280 ~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
...+.+|+++|++|.+ .|.+-++++|+. ..+..+||+|+||++|+||+.|++++++.
T Consensus 459 ~SVQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 459 RSVQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 9999999999999985 499999977775 68999999999999999999999998864
No 56
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=7.1e-45 Score=370.43 Aligned_cols=217 Identities=26% Similarity=0.336 Sum_probs=190.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
|.++++|++++|. .+.+|+|+||.+++||++||+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 1 ~~l~~~~l~~~~~-----~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~---G~i~i~g~~~~~~~~~ 72 (301)
T TIGR03522 1 MSIRVSSLTKLYG-----TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS---GSVQVCGEDVLQNPKE 72 (301)
T ss_pred CEEEEEEEEEEEC-----CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccChHH
Confidence 3589999999994 3469999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
++.+||++|++.+++.+||.||+.+.+.+.... ..+..++++++++.+||.+..++.++ .|||||||||+||
T Consensus 73 ~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~------~LS~G~~qrv~la 145 (301)
T TIGR03522 73 VQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMK-GQLLKQRVEEMIELVGLRPEQHKKIG------QLSKGYRQRVGLA 145 (301)
T ss_pred HHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHCCCchHhcCchh------hCCHHHHHHHHHH
Confidence 246999999999999999999998766543211 12344568899999999988887654 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
+||+.+|++|||||||+|||+.++..+++.|+++++ ++|||+++|+. +++.++||++++|++|++++.|+++++..
T Consensus 146 ~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 146 QALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999965 78999988886 58999999999999999999999988754
No 57
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=7.3e-45 Score=351.69 Aligned_cols=209 Identities=24% Similarity=0.388 Sum_probs=180.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..+
T Consensus 1 i~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~v~~~g~~~~~~~~~~~ 72 (213)
T cd03301 1 VELENVTKRFG-----NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTS---GRIYIGGRDVTDLPPKDR 72 (213)
T ss_pred CEEEeeEEEEC-----CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCCcccc
Confidence 46899999984 3469999999999999999999999999999999999998875 999999987532 124
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+||+||+.+...... ....+..+++.++++.++|.+..++.+ ..||||||||++|||||
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qr~~laral 145 (213)
T cd03301 73 DIAMVFQNYALYPHMTVYDNIAFGLKLRK-VPKDEIDERVREVAELLQIEHLLDRKP------KQLSGGQRQRVALGRAI 145 (213)
T ss_pred eEEEEecChhhccCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCHHHHhCCh------hhCCHHHHHHHHHHHHH
Confidence 69999999999999999999987643321 111234456889999999998877755 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|++ .++..+||++++|++|+++++|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999864 89999998886 5788999999999999999876
No 58
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-45 Score=356.79 Aligned_cols=218 Identities=23% Similarity=0.302 Sum_probs=186.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++|+++.|.++. ..+.+|+++||++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 2 i~~~~l~~~~~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (233)
T cd03258 2 IELKNVSKVFGDTG-GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTS---GSVLVDGTDLTLLSGKEL 77 (233)
T ss_pred eEEecceEEccCCC-CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcccCCHHHH
Confidence 68999999985310 01269999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.+.++|++|++.+++.+|+.||+.+....... ......+.+.++++.++|.+..++.+ ..|||||||||+
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ 150 (233)
T cd03258 78 RKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGV-PKAEIEERVLELLELVGLEDKADAYP------AQLSGGQKQRVG 150 (233)
T ss_pred HHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCChhhhhcCh------hhCCHHHHHHHH
Confidence 24699999999999999999999876543211 11233456889999999988877754 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ +++..+||++++|++|++++.|+++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999865 89999988886 578899999999999999999987765
No 59
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-44 Score=366.14 Aligned_cols=222 Identities=23% Similarity=0.324 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||++.|.......+.+|+||||++.+||++||+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS---GKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---cEEEECCEECCCcCccH
Confidence 478999999995322122469999999999999999999999999999999999999975 999999987532
Q ss_pred --CCceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh--hHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 --PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 --~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~vg~~~~~~~LSGGqrq 254 (513)
..+.+||++|++. .+...||+||+.+..... .....+..+++.++++.+||. +..++ .++.|||||||
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~~~LSgGq~q 151 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL-GLSEEEIENRVKRAMNIVGLDYEDYKDK------SPFELSGGQKR 151 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHC-CCCHHHHHHHHHHHHHHcCCCchhhccC------CcccCCHHHHH
Confidence 1246999999863 223579999998765432 112233456789999999996 55665 44599999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||+|||||+.+|+||||||||+|||+.++..++++|++++++ |+|||+++|+. .++..+||+|++|++|++++.|+++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999865 89999988886 5788899999999999999999998
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 231 ~~~~ 234 (287)
T PRK13637 231 EVFK 234 (287)
T ss_pred HHHh
Confidence 8754
No 60
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.1e-44 Score=357.04 Aligned_cols=216 Identities=23% Similarity=0.335 Sum_probs=185.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 2 IEFKNVSKHFG-----PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITS---GDLIVDGLKVNDPKVDER 73 (240)
T ss_pred EEEEeEEEEEC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCcCChhHH
Confidence 68999999984 3469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++.+++.+||.||+.+...........+..+.+.++++.+||.+..++.+ ..|||||||||+|
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrv~l 147 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP------SELSGGQQQRVAI 147 (240)
T ss_pred HHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh------hhcCHHHHHHHHH
Confidence 124689999999999999999999875421111111234456889999999988777754 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
||||+.+|+||||||||+|||+.++..+.++|++++++|+|||+++|+. .++..+||++++|++|++++.|++.++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999999999999999999999987799999999987 5788899999999999999999887654
No 61
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=5.6e-45 Score=356.07 Aligned_cols=214 Identities=25% Similarity=0.337 Sum_probs=180.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEeCCC-
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-----PHSARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~-----~~~~~~~G~I~i~G~~~~~- 179 (513)
++++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|++ +|. +|+|.++|.+...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYYG-----DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEcC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhc
Confidence 46899999884 346999999999999999999999999999999999998 776 4999999987421
Q ss_pred ------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHH
Q 010314 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqr 253 (513)
..+.++|++|++.++ .+||+||+.+...........+..+++.++++.+||.+..++.+ .+.+||||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----~~~~LSgG~~ 147 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRL----HALGLSGGQQ 147 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccC----CcccCCHHHH
Confidence 124699999999888 78999999876543211111123466889999999987766542 0459999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++ .|||+++|+. .++..+||++++|++|++++.|+++
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCcc
Confidence 9999999999999999999999999999999999999999877 8999988886 5788999999999999999998875
Q ss_pred H
Q 010314 334 A 334 (513)
Q Consensus 334 ~ 334 (513)
+
T Consensus 226 ~ 226 (227)
T cd03260 226 Q 226 (227)
T ss_pred c
Confidence 4
No 62
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.3e-44 Score=372.43 Aligned_cols=224 Identities=23% Similarity=0.272 Sum_probs=189.8
Q ss_pred ceEEEEeEEEEEecccc--------ccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010314 104 ASVVWKDLTVTIKGKRR--------YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~--------~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (513)
..|+++||++.|..+.. ....+|+||||+|++||+++|+|+||||||||+++|+|+++|++ |+|.++|.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~---G~I~~~G~ 83 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATD---GEVAWLGK 83 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCC---cEEEECCE
Confidence 57999999999963211 12569999999999999999999999999999999999999874 99999998
Q ss_pred eCCC--------CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCC-CchhhHHHHHHHHHHHcCCh-hHHhhhhcCCC
Q 010314 176 KSEM--------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHC 243 (513)
Q Consensus 176 ~~~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~ 243 (513)
+... .++.++||+|++ .++|.+||.||+.+......+ ....+..+++.++++.++|. +..++
T Consensus 84 ~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~------ 157 (331)
T PRK15079 84 DLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR------ 157 (331)
T ss_pred ECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcC------
Confidence 7532 124699999997 689999999999886543211 12234456788999999994 45555
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
+|++|||||||||+|||||+.+|+|||+||||+|||+.++.+++++|+++.++ |.|+|+++|+. ..+.++||+|++|+
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~ 236 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMY 236 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 56799999999999999999999999999999999999999999999999865 89999988886 57889999999999
Q ss_pred CCeEEEEeChHHHHH
Q 010314 323 NGNTLFFGETLACLQ 337 (513)
Q Consensus 323 ~G~iv~~G~~~~~~~ 337 (513)
+|++++.|++++++.
T Consensus 237 ~G~ive~g~~~~i~~ 251 (331)
T PRK15079 237 LGHAVELGTYDEVYH 251 (331)
T ss_pred CCEEEEEcCHHHHHc
Confidence 999999999887753
No 63
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=5.8e-45 Score=371.26 Aligned_cols=206 Identities=27% Similarity=0.327 Sum_probs=180.8
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----CceEEEEcCCcccCCCC
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----YGSYGFVERETTLIGSL 197 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----~~~~~yv~Q~~~l~~~l 197 (513)
.+.+|+|+||.+++||++||+||||||||||+++|+|+++|++ |+|.++|.+.... ++.+||++|++.+++.+
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTS---GTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 3569999999999999999999999999999999999999975 9999999875321 24699999999999999
Q ss_pred CHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 010314 198 TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYH 277 (513)
Q Consensus 198 TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsg 277 (513)
||+||+.+.+.+... ...+..++++++++.++|.+..++.++ .|||||||||+||+||+.+|++|||||||+|
T Consensus 82 tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 82 TGRENLEMMGRLYGL-PKDEAEERAEELLELFELGEAADRPVG------TYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred cHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhHhCCchh------hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999886554321 112344578899999999988877654 9999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHH
Q 010314 278 LDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQH 338 (513)
Q Consensus 278 LD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~ 338 (513)
||+.++..++++|++++++|+|||+++|+. .++..+||+|++|++|++++.|+++++...
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999987799999988886 588999999999999999999999887553
No 64
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.9e-44 Score=371.26 Aligned_cols=229 Identities=23% Similarity=0.272 Sum_probs=191.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..|+++||++.|.... +...+|+||||+|++||+++|+|+||||||||+++|+|+++|....+|+|.++|.++...
T Consensus 11 ~~L~i~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred ceEEEeCeEEEEecCC-CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 4789999999996321 234699999999999999999999999999999999999988522359999999875321
Q ss_pred ------CceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHH
Q 010314 181 ------YGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 181 ------~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGq 252 (513)
.+.++|++|++ .++|.+|+.+++.+...........+..+++.++++.++|.+..+.. +.+|++|||||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~---~~~p~~LSgG~ 166 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRM---KMYPHEFSGGM 166 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHh---cCCcccCCHHH
Confidence 13699999997 78899999999977654332222234456788999999997543321 34788999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||+|||||+.+|+|||+||||+|||+.++..|+++|++++++ |.|+|+++|+. ..+.++||+|++|++|++++.|+
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g~ 245 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYGN 245 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999865 89999988886 57888999999999999999999
Q ss_pred hHHHHH
Q 010314 332 TLACLQ 337 (513)
Q Consensus 332 ~~~~~~ 337 (513)
+++++.
T Consensus 246 ~~~i~~ 251 (330)
T PRK09473 246 ARDVFY 251 (330)
T ss_pred HHHHHh
Confidence 988753
No 65
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.2e-44 Score=358.86 Aligned_cols=217 Identities=24% Similarity=0.313 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 3 AIEVKNLVKKFH-----GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEA---GTIRVGDITIDTARSLS 74 (250)
T ss_pred cEEEeceEEEEC-----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEcccccccc
Confidence 489999999984 2469999999999999999999999999999999999998875 999999976421
Q ss_pred --------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH
Q 010314 180 --------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 180 --------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG 251 (513)
..+.++|++|++.+++.+||.||+.+..............+.+.++++.+||.+..++.+ ..||||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G 148 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYP------RRLSGG 148 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCCh------hhCChH
Confidence 124689999999999999999999875322111111233456888999999987776644 599999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
|||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|.|||+++|+. .++.++||++++|++|++++.|+
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~ 227 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEM-SFARDVADRAIFMDQGRIVEQGP 227 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987789999988886 57889999999999999999999
Q ss_pred hHHHH
Q 010314 332 TLACL 336 (513)
Q Consensus 332 ~~~~~ 336 (513)
++++.
T Consensus 228 ~~~~~ 232 (250)
T PRK11264 228 AKALF 232 (250)
T ss_pred HHHHh
Confidence 87653
No 66
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.5e-45 Score=357.23 Aligned_cols=216 Identities=28% Similarity=0.405 Sum_probs=183.0
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++||++.|.+ .+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 1 l~~~~l~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 73 (241)
T cd03256 1 IEVENLSKTYPN----GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS---GSVLIDGTDINKLKGKAL 73 (241)
T ss_pred CEEeeEEEecCC----ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEEECCEeccccCHhHH
Confidence 468999998842 1469999999999999999999999999999999999998874 9999999875321
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhc-------CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQ-------LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~-------~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSG 250 (513)
.+.++|++|++.+++.+||+||+.+..... .........+++.++++.++|.+..++.+ .+|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~ 147 (241)
T cd03256 74 RQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA------DQLSG 147 (241)
T ss_pred HHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc------ccCCH
Confidence 246899999999999999999997653210 00011223456788999999987776644 59999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|++ +++..+||++++|++|++++.
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~ 226 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVFD 226 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999999999999999999764 89999988887 578889999999999999999
Q ss_pred eChHHH
Q 010314 330 GETLAC 335 (513)
Q Consensus 330 G~~~~~ 335 (513)
|+++++
T Consensus 227 ~~~~~~ 232 (241)
T cd03256 227 GPPAEL 232 (241)
T ss_pred cCHHHh
Confidence 988765
No 67
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.1e-44 Score=351.71 Aligned_cols=213 Identities=30% Similarity=0.416 Sum_probs=182.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
++++|+++.|.++. ....+|+++||++++||+++|+|+||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 2 l~~~~v~~~~~~~~-~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 77 (218)
T cd03266 2 ITADALTKRFRDVK-KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA---GFATVDGFDVVKEPAEAR 77 (218)
T ss_pred eEEEEEEEecCCCC-ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEEECCEEcccCHHHHH
Confidence 68899999985321 11269999999999999999999999999999999999999875 999999987532 13
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+||+||+.+....... ...+..+++.++++.+||.+..++.++ .|||||||||+||||
T Consensus 78 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrv~lara 150 (218)
T cd03266 78 RRLGFVSDSTGLYDRLTARENLEYFAGLYGL-KGDELTARLEELADRLGMEELLDRRVG------GFSTGMRQKVAIARA 150 (218)
T ss_pred hhEEEecCCcccCcCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHhhhhh------hcCHHHHHHHHHHHH
Confidence 5699999999999999999999875443211 112345678899999999988887654 999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. .++..+||++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999987799999988887 5788999999999999998754
No 68
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=7.8e-45 Score=377.28 Aligned_cols=206 Identities=26% Similarity=0.344 Sum_probs=181.7
Q ss_pred ccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------CceEEEEcCCc
Q 010314 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------YGSYGFVERET 191 (513)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---------~~~~~yv~Q~~ 191 (513)
+.+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++... ++.++||+|++
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~---G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTA---GQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCc---eEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 34569999999999999999999999999999999999999975 9999999875421 35799999999
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 010314 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFI 271 (513)
Q Consensus 192 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLll 271 (513)
.+||.+||+||+.+...+... ...+..+++.++++.+||.++.++.+ .+|||||||||+|||||+.+|+||||
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~-~~~~~~~~~~~~l~~vgL~~~~~~~p------~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGW-PEQERKEKALELLKLVGLEEYEHRYP------DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCchhhhCCh------hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999987654321 12345567899999999988887754 59999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 272 DEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||||++||+.++..+.+.|.++.++ |+|||+++|+. .++..+||+|++|++|+++..|++++++.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 9999999999999999999999764 89999988886 57899999999999999999999988754
No 69
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=8.7e-45 Score=353.20 Aligned_cols=212 Identities=24% Similarity=0.369 Sum_probs=181.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (222)
T cd03224 1 LEVENLNAGYG-----KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRS---GSIRFDGRDITGLPPHER 72 (222)
T ss_pred CEEeeEEeecC-----CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcCCCCHHHH
Confidence 46899999884 3469999999999999999999999999999999999999875 9999999865321
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHc-CChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-SLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~-~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.+.++|++|++.+++.+|++||+.+...... . .+....+.++++.+ ++.+..++.+ +.|||||||||+|
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-~--~~~~~~~~~~l~~~~~l~~~~~~~~------~~LS~G~~qrv~l 143 (222)
T cd03224 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYARR-R--AKRKARLERVYELFPRLKERRKQLA------GTLSGGEQQMLAI 143 (222)
T ss_pred HhcCeEEeccccccCCCCcHHHHHHHHhhhcC-c--hhHHHHHHHHHHHHHhhhhhhhCch------hhCCHHHHHHHHH
Confidence 2459999999999999999999987654321 1 12344567788887 5776666644 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
||||+.+|++|||||||+|||+.++..+++.|+++++.|+|||+++|++ .++..+||++++|++|+++..|+++++
T Consensus 144 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 144 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999987789999988886 578899999999999999999987764
No 70
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=366.26 Aligned_cols=220 Identities=23% Similarity=0.289 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||++.|.+.....+.+|+||||+|++||+++|+||||||||||+++|+|+++|+. |+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS---GTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 478999999995322112469999999999999999999999999999999999999875 999999987531
Q ss_pred ----CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHH
Q 010314 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGq 252 (513)
..+.++|++|++ .++ ..||.||+.|+..... ....+..++++++++.++|. +..++. +..|||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~~LSgGq 150 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFG-VSEEDAKQKAREMIELVGLPEELLARS------PFELSGGQ 150 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCCChhhhhCC------cccCCHHH
Confidence 124699999986 455 4699999988654321 11123345789999999996 566664 45999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||+|||||+.+|+||||||||+|||+.++..++++|++++++ |.|||+++|+. .++.++||||++|++|++++.|+
T Consensus 151 ~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g~ 229 (290)
T PRK13634 151 MRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQGT 229 (290)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999765 89999988886 57889999999999999999999
Q ss_pred hHHHH
Q 010314 332 TLACL 336 (513)
Q Consensus 332 ~~~~~ 336 (513)
++++.
T Consensus 230 ~~~~~ 234 (290)
T PRK13634 230 PREIF 234 (290)
T ss_pred HHHHh
Confidence 88765
No 71
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.2e-44 Score=351.86 Aligned_cols=214 Identities=28% Similarity=0.384 Sum_probs=183.3
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
|+++|+++.|.+. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 1 l~~~~l~~~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (220)
T cd03263 1 LQIRNLTKTYKKG---TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS---GTAYINGYSIRTDRKAAR 74 (220)
T ss_pred CEEEeeEEEeCCC---CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccchHHHh
Confidence 4689999998421 1569999999999999999999999999999999999998875 999999987532 13
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+||+||+.+........ ..+..+++.++++.++|.+..++.++ +|||||||||+||||
T Consensus 75 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrv~la~a 147 (220)
T cd03263 75 QSLGYCPQFDALFDELTVREHLRFYARLKGLP-KSEIKEEVELLLRVLGLTDKANKRAR------TLSGGMKRKLSLAIA 147 (220)
T ss_pred hhEEEecCcCCccccCCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHHHHhChhh------hCCHHHHHHHHHHHH
Confidence 46999999999999999999998765433211 12234568899999999888777554 999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+.+|++|||||||+|||+.++..+++.|+++++ +.|||+++|++ ..+..+||++++|++|++++.|++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999999976 58999988887 57888999999999999999998765
No 72
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.9e-44 Score=361.69 Aligned_cols=218 Identities=21% Similarity=0.307 Sum_probs=186.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++||++.|. .+.+|+||||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 6 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~ 77 (269)
T PRK11831 6 NLVDMRGVSFTRG-----NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDH---GEILFDGENIPAMSRS 77 (269)
T ss_pred ceEEEeCeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEccccChh
Confidence 3689999999984 3469999999999999999999999999999999999999874 999999986531
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|+..+++.+||.||+.+................+.++++.++|.+..++.+ ..||||||||
T Consensus 78 ~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qr 151 (269)
T PRK11831 78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP------SELSGGMARR 151 (269)
T ss_pred hHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHH
Confidence 124689999999999999999999875432111111223456788999999988877754 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|+. .++..+||++++|++|++++.|++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQA 230 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999765 89999988886 57889999999999999999999877
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
+.
T Consensus 231 ~~ 232 (269)
T PRK11831 231 LQ 232 (269)
T ss_pred Hh
Confidence 54
No 73
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.2e-44 Score=380.19 Aligned_cols=217 Identities=27% Similarity=0.383 Sum_probs=189.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.|+++||++.|. ++.+|+|+||.+++||+++|+||||||||||||+|+|+++|.+ |+|.++|++...
T Consensus 3 ~L~~~nls~~y~-----~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~s---G~I~l~G~~i~~~~~~~ 74 (402)
T PRK09536 3 MIDVSDLSVEFG-----DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA---GTVLVAGDDVEALSARA 74 (402)
T ss_pred eEEEeeEEEEEC-----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCC---cEEEECCEEcCcCCHHH
Confidence 589999999984 3579999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhc---CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQ---LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~---~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|++.+++.+||+||+.++.... .........++++++++.++|.+..++.+ ++|||||||||
T Consensus 75 ~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~------~~LSgGerQRv 148 (402)
T PRK09536 75 ASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV------TSLSGGERQRV 148 (402)
T ss_pred HhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHH
Confidence 1356999999999989999999998753211 11111234567899999999998888755 49999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+|||||+.+|+||||||||+|||+.++.+++++|++++++|+|||+++|+. +++.++||++++|++|++++.|++++++
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999987789999988886 6889999999999999999999998754
No 74
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-44 Score=349.91 Aligned_cols=209 Identities=25% Similarity=0.428 Sum_probs=180.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCceE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGSY 184 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ 184 (513)
++++|+++.|. .+.+|+|+||++.+|++++|+||||||||||+++|+|+++|+. |+|.++|.+... ..+.+
T Consensus 1 l~~~~l~~~~~-----~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~i 72 (210)
T cd03269 1 LEVENVTKRFG-----RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDS---GEVLFDGKPLDIAARNRI 72 (210)
T ss_pred CEEEEEEEEEC-----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCCchhHHHHccE
Confidence 46899999884 3469999999999999999999999999999999999998874 999999976432 23569
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~ 264 (513)
+|++|++.+++.+||+||+.+....+.. ...+..+.+.++++.+++.+..++.+ ++|||||||||+||+||+.
T Consensus 73 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~la~al~~ 145 (210)
T cd03269 73 GYLPEERGLYPKMKVIDQLVYLAQLKGL-KKEEARRRIDEWLERLELSEYANKRV------EELSKGNQQKVQFIAAVIH 145 (210)
T ss_pred EEeccCCcCCcCCcHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcCChHHHhCcH------hhCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999876543211 11234467889999999988777754 4999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. .++.++||++++|++|++++.|
T Consensus 146 ~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 146 DPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999999999987789999988886 5788899999999999998754
No 75
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=368.94 Aligned_cols=221 Identities=20% Similarity=0.244 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (513)
.|+++||++.|.++......+|+||||+|.+||++||+||||||||||+++|+|+++|+. |+|.++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT---GTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEEeceecccccccc
Confidence 489999999996432223469999999999999999999999999999999999999975 99999986431
Q ss_pred -----------------------CCCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-
Q 010314 179 -----------------------MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS- 232 (513)
Q Consensus 179 -----------------------~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~- 232 (513)
...+.+||++|++ .++ ..||+||+.|+.... .....+..+++.++++.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~ 156 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM-GVSKEEAKKRAAKYIELVGLDE 156 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCCh
Confidence 0124689999985 455 469999998865432 111234456789999999996
Q ss_pred hHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHH
Q 010314 233 DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 312 (513)
Q Consensus 233 ~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~ 312 (513)
+..++. +..|||||||||+||++|+.+|+||||||||+|||+.++..+++.|+++++.|.|||+++|+. +.+.
T Consensus 157 ~~~~~~------~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~ 229 (305)
T PRK13651 157 SYLQRS------PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL-DNVL 229 (305)
T ss_pred hhhhCC------hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH-HHHH
Confidence 677764 459999999999999999999999999999999999999999999999987799999988886 5788
Q ss_pred hcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 313 GLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 313 ~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
++||+|++|++|++++.|+++++..
T Consensus 230 ~~adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 230 EWTKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred HhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999988753
No 76
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.2e-44 Score=349.13 Aligned_cols=205 Identities=26% Similarity=0.364 Sum_probs=179.1
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
++++|+++.|. .+.+|+++||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 72 (208)
T cd03268 1 LKTNDLTKTYG-----KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS---GEITFDGKSYQKNIEALR 72 (208)
T ss_pred CEEEEEEEEEC-----CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCCcccchHHHHh
Confidence 46899999984 3469999999999999999999999999999999999999874 999999976432 134
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+||.||+.+...... ...++++++++.++|.+..++.++ .|||||||||+|||||
T Consensus 73 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~qrv~la~al 141 (208)
T cd03268 73 RIGALIEAPGFYPNLTARENLRLLARLLG-----IRKKRIDEVLDVVGLKDSAKKKVK------GFSLGMKQRLGIALAL 141 (208)
T ss_pred hEEEecCCCccCccCcHHHHHHHHHHhcC-----CcHHHHHHHHHHcCCHHHHhhhHh------hCCHHHHHHHHHHHHH
Confidence 69999999999999999999987653221 123567889999999988887654 9999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
+.+|++|||||||+|||+.++..+++.|++++++|+|+|+++|++ ..+..+||++++|++|++++.|
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999987789999988886 5788899999999999998764
No 77
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=9.4e-45 Score=352.16 Aligned_cols=208 Identities=29% Similarity=0.373 Sum_probs=176.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++||++.|.+.+ ..+.+|+++||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 1 l~~~~l~~~~~~~~-~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 76 (218)
T cd03255 1 IELKNLSKTYGGGG-EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTS---GEVRVDGTDISKLSEKEL 76 (218)
T ss_pred CeEeeeEEEecCCC-cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCc---eeEEECCEehhhcchhHH
Confidence 46899999985311 01469999999999999999999999999999999999999875 999999987532
Q ss_pred ---CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|++.+++.+||+||+.+........ .....+.+.++++.+||.+..++.+ +.|||||||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv 149 (218)
T cd03255 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVP-KKERRERAEELLERVGLGDRLNHYP------SELSGGQQQRV 149 (218)
T ss_pred HHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHcCCchhhhcCh------hhcCHHHHHHH
Confidence 1246999999999999999999998865433111 1233456889999999988877754 49999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
+|||||+.+|+||||||||+|||+.++..+.+.|+++++ .|+|||+++|+.. ++. +||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999987 5899999999874 565 9999999999974
No 78
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-44 Score=344.29 Aligned_cols=216 Identities=23% Similarity=0.338 Sum_probs=187.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.|+++||+..| +..++|++|||++++||+++|+|+||+|||||||+|+|+.++.+ |+|.++|+++...
T Consensus 3 mL~v~~l~~~Y-----G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~---G~I~~~G~dit~~p~~~ 74 (237)
T COG0410 3 MLEVENLSAGY-----GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRS---GRIIFDGEDITGLPPHE 74 (237)
T ss_pred ceeEEeEeecc-----cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eeEEECCeecCCCCHHH
Confidence 68999999988 34689999999999999999999999999999999999999864 9999999986432
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcC-ChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~-L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
+..++||||...+||.|||+|||..++..+.... .....++++.+.|- |.+.++++.| .|||||||.++
T Consensus 75 r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~--~~~~~~e~v~~lFP~Lker~~~~aG------~LSGGEQQMLA 146 (237)
T COG0410 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKE--AQERDLEEVYELFPRLKERRNQRAG------TLSGGEQQMLA 146 (237)
T ss_pred HHhCCeEeCcccccchhhCcHHHHHhhhhhcccccc--cccccHHHHHHHChhHHHHhcCccc------CCChHHHHHHH
Confidence 3579999999999999999999988764432211 11222777888875 5677777665 99999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|++|+|||||.||-|.-..+|.+.|++|+++ |.||++ ++|....+.+++||.++|.+|++++.|+++++.
T Consensus 147 iaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlL-VEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~ 225 (237)
T COG0410 147 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILL-VEQNARFALEIADRGYVLENGRIVLSGTAAELL 225 (237)
T ss_pred HHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEE-EeccHHHHHHhhCEEEEEeCCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999976 778888 678788999999999999999999999998875
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 226 ~ 226 (237)
T COG0410 226 A 226 (237)
T ss_pred c
Confidence 4
No 79
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-44 Score=368.20 Aligned_cols=232 Identities=20% Similarity=0.244 Sum_probs=190.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.|.+.....+.+|+||||++++||++||+|+||||||||+++|+|+++|++ |+|+++|.+...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~---G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY---GTIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCEEccccccc
Confidence 4699999999996322122469999999999999999999999999999999999999875 999999976421
Q ss_pred -----------------CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhh
Q 010314 180 -----------------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLI 239 (513)
Q Consensus 180 -----------------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~v 239 (513)
..+.++||+|++ .+++ .||+||+.++.... .....+..+++.++++.++|. +..++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~- 173 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL-GVKKSEAKKLAKFYLNKMGLDDSYLERS- 173 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCChhHhcCC-
Confidence 124699999986 5675 49999998865322 111123445788999999996 566653
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEE
Q 010314 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (513)
Q Consensus 240 g~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (513)
+.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|+. +.+..+||+++
T Consensus 174 -----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~-~~~~~~adri~ 247 (320)
T PRK13631 174 -----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM-EHVLEVADEVI 247 (320)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEE
Confidence 459999999999999999999999999999999999999999999999987799999988886 47889999999
Q ss_pred EEeCCeEEEEeChHHHHH---HhHhcCCCCC
Q 010314 320 LLSNGNTLFFGETLACLQ---HFSNAGFPCP 347 (513)
Q Consensus 320 vL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 347 (513)
+|++|++++.|+++++.. .+...+...|
T Consensus 248 vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 999999999999987653 2334455544
No 80
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-44 Score=359.51 Aligned_cols=216 Identities=26% Similarity=0.321 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++|+++.|.+ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 4 ~l~~~~l~~~~~~----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 76 (274)
T PRK13647 4 IIEVEDLHFRYKD----GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR---GRVKVMGREVNAENEKW 76 (274)
T ss_pred eEEEEEEEEEeCC----CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc---eEEEECCEECCCCCHHH
Confidence 5899999999842 2469999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 -YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.+.++|++|++. .++..||.||+.+....... ...+..+++.++++.++|.+..++.+ ..|||||||||+|
T Consensus 77 ~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LSgG~~qrv~l 149 (274)
T PRK13647 77 VRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGL-DKDEVERRVEEALKAVRMWDFRDKPP------YHLSYGQKKRVAI 149 (274)
T ss_pred HHhhEEEEecChhhhhccCcHHHHHHhhHHHcCC-CHHHHHHHHHHHHHHCCCHHHhcCCh------hhCCHHHHHHHHH
Confidence 246999999962 34467999999876432211 11233456889999999988877754 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
||||+.+|++|||||||+|||+.++..++++|++++++|+|||+++|+. +.+.++||++++|++|++++.|+++++
T Consensus 150 araL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 150 AGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999999999987799999988886 578899999999999999999998643
No 81
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1e-44 Score=357.58 Aligned_cols=216 Identities=28% Similarity=0.388 Sum_probs=182.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
+.++||++.|.. .+.+|+|+||++.+|++++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR02315 2 LEVENLSKVYPN----GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSS---GSILLEGTDITKLRGKKL 74 (243)
T ss_pred eEEEeeeeecCC----CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---cEEEECCEEhhhCCHHHH
Confidence 678999998841 3469999999999999999999999999999999999999875 999999987431
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhc------C-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQ------L-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~------~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSG 250 (513)
..+.++|++|++.+++.+||+||+.+..... . .....+..+++.++++.++|.+..++.+ ..|||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSg 148 (243)
T TIGR02315 75 RKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA------DQLSG 148 (243)
T ss_pred HHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc------ccCCH
Confidence 1246999999999999999999997642110 0 0011233456888999999988777644 49999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||+++|+. ..+.++||++++|++|++++.
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~ 227 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVFD 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999999764 89999988887 478899999999999999999
Q ss_pred eChHHH
Q 010314 330 GETLAC 335 (513)
Q Consensus 330 G~~~~~ 335 (513)
|+++++
T Consensus 228 ~~~~~~ 233 (243)
T TIGR02315 228 GAPSEL 233 (243)
T ss_pred CCHHHh
Confidence 987764
No 82
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-44 Score=368.49 Aligned_cols=224 Identities=20% Similarity=0.224 Sum_probs=189.5
Q ss_pred ceEEEEeEEEEEecccc-----ccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC
Q 010314 104 ASVVWKDLTVTIKGKRR-----YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE 178 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~-----~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~ 178 (513)
..|+++||++.|..+.. ....+|+||||+|++||++||+|+||||||||+++|+|+++|.+ |+|.++|.++.
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~---G~i~~~g~~l~ 80 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTG---GELYYQGQDLL 80 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCC---cEEEECCEEcC
Confidence 46899999999963211 12479999999999999999999999999999999999998864 99999998753
Q ss_pred C--------CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCC
Q 010314 179 M--------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKG 247 (513)
Q Consensus 179 ~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~ 247 (513)
. .++.++|++|++ .++|.+||.+++.+...........+..+++.++++.+||.+ ..++ +|++
T Consensus 81 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~------~p~~ 154 (327)
T PRK11308 81 KADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDR------YPHM 154 (327)
T ss_pred cCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcC------CCcc
Confidence 2 124699999997 689999999999776543211122344567899999999963 5554 5679
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|||||||||+|||||+.+|+|||+||||+|||+.++..|+++|++++++ |.|+|+++|+. ..+.++||+|++|++|++
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRC 233 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999864 99999988886 578889999999999999
Q ss_pred EEEeChHHHHH
Q 010314 327 LFFGETLACLQ 337 (513)
Q Consensus 327 v~~G~~~~~~~ 337 (513)
++.|++++++.
T Consensus 234 ve~g~~~~~~~ 244 (327)
T PRK11308 234 VEKGTKEQIFN 244 (327)
T ss_pred EEECCHHHHhc
Confidence 99999988754
No 83
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-44 Score=368.62 Aligned_cols=228 Identities=21% Similarity=0.223 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~-~~~G~I~i~G~~~~~~--- 180 (513)
.|+++||++.|..+. ....+|+||||+|++||++||+|+||||||||+++|+|++++.+ ..+|+|.++|+++...
T Consensus 3 ~L~v~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKLSVHFGDES-APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCeEEEECCCC-ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 589999999995421 12469999999999999999999999999999999999987422 2369999999875321
Q ss_pred ------CceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHH
Q 010314 181 ------YGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 181 ------~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGq 252 (513)
.+.++|++|++ .++|.+||.+++.............+..+++.++++.+||.+..... +.++++|||||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l---~~~p~~LSgGq 158 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRL---DVYPHQLSGGM 158 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHH---hCCchhCCHHH
Confidence 13599999997 58899999999876544321112234456789999999997532221 23677999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||+|||||+.+|+|||+||||+|||+.++.+++++|+++++ .|.|+|+++|+. ..+.++||+|++|++|++++.|+
T Consensus 159 ~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g~ 237 (326)
T PRK11022 159 SQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETGK 237 (326)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999986 489999988886 47889999999999999999999
Q ss_pred hHHHHH
Q 010314 332 TLACLQ 337 (513)
Q Consensus 332 ~~~~~~ 337 (513)
+++++.
T Consensus 238 ~~~~~~ 243 (326)
T PRK11022 238 AHDIFR 243 (326)
T ss_pred HHHHhh
Confidence 988753
No 84
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-44 Score=363.92 Aligned_cols=222 Identities=21% Similarity=0.270 Sum_probs=186.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
|.++++||++.|..+....+.+|+||||+|++||+++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 1 ~~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~---G~i~~~g~~i~~~~~~ 77 (286)
T PRK13646 1 MTIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT---GTVTVDDITITHKTKD 77 (286)
T ss_pred CEEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECcccccc
Confidence 3589999999995322123469999999999999999999999999999999999999975 999999987532
Q ss_pred -----CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHH
Q 010314 180 -----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 180 -----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGG 251 (513)
..+.+||++|++ .+++ .||.||+.+...... ....+..+++.++++.+||. +..++. ++.||||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~~LSgG 149 (286)
T PRK13646 78 KYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFK-MNLDEVKNYAHRLLMDLGFSRDVMSQS------PFQMSGG 149 (286)
T ss_pred chHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcC-CCHHHHHHHHHHHHHHcCCChhhhhCC------cccCCHH
Confidence 124699999986 5665 599999988653321 11123456788999999996 666664 4599999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|||||+|||||+.+|+||||||||+|||+.++..+.++|+++++ .|+|||+++|+. +++.++||++++|++|++++.|
T Consensus 150 q~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~g 228 (286)
T PRK13646 150 QMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQT 228 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999985 489999988886 5788999999999999999999
Q ss_pred ChHHHHH
Q 010314 331 ETLACLQ 337 (513)
Q Consensus 331 ~~~~~~~ 337 (513)
++.+++.
T Consensus 229 ~~~~~~~ 235 (286)
T PRK13646 229 SPKELFK 235 (286)
T ss_pred CHHHHHh
Confidence 9887654
No 85
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-45 Score=360.14 Aligned_cols=223 Identities=25% Similarity=0.316 Sum_probs=196.3
Q ss_pred ceEEEEeEEEEEeccc-------------------cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 010314 104 ASVVWKDLTVTIKGKR-------------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA 164 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~-------------------~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~ 164 (513)
..++++|+.+-|.... .+-..-++|+||+++.||++.|||-||||||||+++|+++.+|+.
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 3588999998885320 112246899999999999999999999999999999999999986
Q ss_pred CceeEEEECCEeCCC---------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHH
Q 010314 165 RMYGEVFVNGAKSEM---------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYA 235 (513)
Q Consensus 165 ~~~G~I~i~G~~~~~---------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~ 235 (513)
|+|+++|.++.. +++.+++|||...|+|+.||.||..|+..++.-. ..++++++.++|+.+||.++.
T Consensus 83 ---G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~-~~er~~~a~~~l~~VgL~~~~ 158 (386)
T COG4175 83 ---GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP-KAEREERALEALELVGLEGYA 158 (386)
T ss_pred ---ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCC-HHHHHHHHHHHHHHcCchhhh
Confidence 999999987421 2457999999999999999999999987765322 256788899999999999998
Q ss_pred hhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhc
Q 010314 236 NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGL 314 (513)
Q Consensus 236 ~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~ 314 (513)
++ ||++|||||||||.|||||+.+|+|||||||+|+|||--+.++-+.|.+|.++ ++|||+++|+. ++++++
T Consensus 159 ~~------yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlri 231 (386)
T COG4175 159 DK------YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALRI 231 (386)
T ss_pred hc------CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHhc
Confidence 87 56699999999999999999999999999999999999999999999999865 89999988875 699999
Q ss_pred CCEEEEEeCCeEEEEeChHHHHH
Q 010314 315 FDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 315 ~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
.|||.+|++|++|..|+|+|++.
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHHc
Confidence 99999999999999999999874
No 86
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-44 Score=354.26 Aligned_cols=217 Identities=23% Similarity=0.408 Sum_probs=186.5
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 3 TLTAKNLAKAYK-----GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA---GNIIIDDEDISLLPLHA 74 (241)
T ss_pred eEEEeCcEEEeC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 488999999984 3469999999999999999999999999999999999999875 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++.+++.+||.||+.+...........+....+.++++.+++.+..++.+ +.|||||||||+|
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~l 148 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG------QSLSGGERRRVEI 148 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcch------hhCCHHHHHHHHH
Confidence 124699999999999999999999875432211111234456889999999988776654 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
||||+.+|++|||||||+|||+.++..+.+.|+++++.|.|||+++|++ .++..+||++++|++|++++.|+++++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 9999999999999999999999999999999999987799999998886 5788999999999999999999887653
No 87
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=4.7e-44 Score=354.14 Aligned_cols=217 Identities=22% Similarity=0.326 Sum_probs=182.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~---- 179 (513)
++++||++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~ 76 (247)
T TIGR00972 2 IEIENLNLFYG-----EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76 (247)
T ss_pred EEEEEEEEEEC-----CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccc
Confidence 68999999984 2469999999999999999999999999999999999998750 014999999987532
Q ss_pred ---CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh----hHHhhhhcCCCCCCCCCHHH
Q 010314 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~vg~~~~~~~LSGGq 252 (513)
..+.++|++|++.+++ +|+.||+.+....+......+..+.+.++++.+||. +..++ .++.|||||
T Consensus 77 ~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LSgG~ 149 (247)
T TIGR00972 77 VVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHD------SALGLSGGQ 149 (247)
T ss_pred hHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhC------CcccCCHHH
Confidence 1246999999999998 999999987654321111123445688999999997 55555 455999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
||||+|||||+.+|++|||||||+|||+.++..++++|+++++ ++|||+++|++ .++..+||++++|++|++++.|++
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 227 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNM-QQAARISDRTAFFYDGELVEYGPT 227 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999976 48999988886 578899999999999999999998
Q ss_pred HHHH
Q 010314 333 LACL 336 (513)
Q Consensus 333 ~~~~ 336 (513)
+++.
T Consensus 228 ~~~~ 231 (247)
T TIGR00972 228 EQIF 231 (247)
T ss_pred HHHH
Confidence 7754
No 88
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-44 Score=353.84 Aligned_cols=216 Identities=26% Similarity=0.423 Sum_probs=184.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (513)
++++|+++.|.+ .+.+|+++||.+++|++++|+||||||||||+++|+|+++|+. |+|.++|.+... .
T Consensus 1 l~~~~l~~~~~~----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 1 IEFENVTKRYGG----GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTS---GEIFIDGEDIREQDPVEL 73 (242)
T ss_pred CEEEEEEEEeCC----cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCeEcCcCChHHh
Confidence 468999999842 1469999999999999999999999999999999999999875 999999986432 1
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh--HHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD--YANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~--~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.+.++|++|++.+++.+||+||+.+...+... ......+.+.++++.++|.+ ..++.+ .+|||||||||+|
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~~~~~~~------~~LS~G~~qrv~l 146 (242)
T cd03295 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKW-PKEKIRERADELLALVGLDPAEFADRYP------HELSGGQQQRVGV 146 (242)
T ss_pred hcceEEEccCccccCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCCcHHHHhcCh------hhCCHHHHHHHHH
Confidence 24689999999999999999999876543211 11234456889999999985 666644 5999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++..+||++++|++|++++.|+++++.
T Consensus 147 aral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 147 ARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999865 89999999987 4788999999999999999999877653
No 89
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-44 Score=354.10 Aligned_cols=216 Identities=24% Similarity=0.300 Sum_probs=184.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE----- 178 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~----- 178 (513)
|.+.++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+..
T Consensus 1 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~ 72 (242)
T PRK11124 1 MSIQLNGINCFYG-----AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRS---GTLNIAGNHFDFSKTP 72 (242)
T ss_pred CEEEEEeeEEEEC-----CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEeccccccc
Confidence 3588999999984 3469999999999999999999999999999999999998875 99999998641
Q ss_pred -C-----CCceEEEEcCCcccCCCCCHHHHHHHHH-HhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH
Q 010314 179 -M-----PYGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 179 -~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG 251 (513)
. ..+.++|++|++.+++.+||.||+.+.. ... .....+..+.+.++++.+||.+..++.+ ..||||
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G 145 (242)
T PRK11124 73 SDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL-GLSKDQALARAEKLLERLRLKPYADRFP------LHLSGG 145 (242)
T ss_pred chhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHH
Confidence 0 1246899999999999999999996532 221 1111233456889999999988777754 499999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
|||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|+|+++|++ .++.++||++++|++|++++.|+
T Consensus 146 ~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~~ 224 (242)
T PRK11124 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGD 224 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987799999988887 57788999999999999999998
Q ss_pred hHHH
Q 010314 332 TLAC 335 (513)
Q Consensus 332 ~~~~ 335 (513)
+++.
T Consensus 225 ~~~~ 228 (242)
T PRK11124 225 ASCF 228 (242)
T ss_pred HHHh
Confidence 7653
No 90
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-44 Score=362.44 Aligned_cols=221 Identities=21% Similarity=0.219 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.+.++||++.|.+.....+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSS---GTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECccccccc
Confidence 578999999995221112469999999999999999999999999999999999999975 999999987521
Q ss_pred ----CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHH
Q 010314 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGq 252 (513)
..+.++|++|++ .++ .+||.||+.+....... ...+..++++++++.+||. +..++.+ +.|||||
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~~------~~LSgGq 150 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGF-SEDEAKEKALKWLKKVGLSEDLISKSP------FELSGGQ 150 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCChhHhhCCc------ccCCHHH
Confidence 124689999996 455 57999999876433211 1123445688999999997 6777754 4999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|+. ..+.++||++++|++|++++.|++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999987799999988876 578899999999999999999998
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
+++..
T Consensus 230 ~~~~~ 234 (287)
T PRK13641 230 KEIFS 234 (287)
T ss_pred HHHhc
Confidence 87653
No 91
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-44 Score=360.94 Aligned_cols=214 Identities=25% Similarity=0.330 Sum_probs=183.3
Q ss_pred EEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------
Q 010314 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------- 179 (513)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------- 179 (513)
.++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 26 ~~~~~~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~---G~i~i~g~~~~~~~~~~~~ 97 (269)
T cd03294 26 SKEEILKKTG-----QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTS---GKVLIDGQDIAAMSRKELR 97 (269)
T ss_pred hhhhhhhhcC-----CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEccccChhhhh
Confidence 5567777763 4569999999999999999999999999999999999999875 999999986431
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++.+||.||+.+....... ......+.+.++++.++|.+..++.+ .+|||||||||+
T Consensus 98 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Gq~qrv~ 170 (269)
T cd03294 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGV-PRAEREERAAEALELVGLEGWEHKYP------DELSGGMQQRVG 170 (269)
T ss_pred hhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCHhHhhCCc------ccCCHHHHHHHH
Confidence 124699999999999999999999886543211 11233456889999999998888755 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||+++|+. .++..+||++++|++|++++.|+++++.
T Consensus 171 lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 171 LARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999754 89999988886 5788999999999999999999987764
No 92
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=4.8e-44 Score=356.18 Aligned_cols=218 Identities=24% Similarity=0.261 Sum_probs=185.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++||++.|. .+.+|+|+||.+++||+++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 4 ~~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~ 75 (257)
T PRK10619 4 NKLNVIDLHKRYG-----EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSE---GSIVVNGQTINLVRDK 75 (257)
T ss_pred ccEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEccccccc
Confidence 3589999999984 3469999999999999999999999999999999999999875 999999976421
Q ss_pred --------------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHH-hhhhcCCCC
Q 010314 180 --------------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYA-NKLIGGHCY 244 (513)
Q Consensus 180 --------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~~~vg~~~~ 244 (513)
..+.++|++|++.+++.+||+||+.+..............+++.++++.+|+.+.. ++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------ 149 (257)
T PRK10619 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKY------ 149 (257)
T ss_pred ccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCC------
Confidence 12469999999999999999999977532111111123456788999999998764 553
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCC
Q 010314 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (513)
Q Consensus 245 ~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (513)
+.+|||||||||+|||||+.+|+||||||||+|||+.++..++++|+++++.|+|||+++|++ .++..+||++++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G 228 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQG 228 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECC
Confidence 459999999999999999999999999999999999999999999999987799999988886 5788899999999999
Q ss_pred eEEEEeChHHHH
Q 010314 325 NTLFFGETLACL 336 (513)
Q Consensus 325 ~iv~~G~~~~~~ 336 (513)
++++.|++++..
T Consensus 229 ~i~~~~~~~~~~ 240 (257)
T PRK10619 229 KIEEEGAPEQLF 240 (257)
T ss_pred EEEEeCCHHHhh
Confidence 999999887653
No 93
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3.3e-44 Score=347.20 Aligned_cols=206 Identities=26% Similarity=0.307 Sum_probs=177.0
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|.+ .+.+|+|+||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 1 l~~~~l~~~~~~----~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 1 IEFINVTKTYPN----GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTS---GTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred CEEEEEEEEeCC----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcccCCHHHH
Confidence 468999999842 2469999999999999999999999999999999999998875 999999986532
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++.+|+.||+.+....... ...+..+++.++++.++|.+..++.+ .+||||||||++
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ 146 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGV-PPREIRKRVPAALELVGLSHKHRALP------AELSGGEQQRVA 146 (214)
T ss_pred HHHHHheEEEecCchhccCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHhhCCh------hhcCHHHHHHHH
Confidence 124699999999999999999999876543211 11234456889999999988777754 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||+++|++ ..+..+||++++|++|++
T Consensus 147 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999987789999988887 578889999999999974
No 94
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=4.2e-44 Score=346.67 Aligned_cols=205 Identities=24% Similarity=0.331 Sum_probs=176.7
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|.+ .+.+|+|+||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (214)
T TIGR02673 2 IEFHNVSKAYPG----GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSR---GQVRIAGEDVNRLRGRQL 74 (214)
T ss_pred EEEEeeeEEeCC----CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcccCCHHHH
Confidence 689999999841 2469999999999999999999999999999999999998874 999999987532
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++.+||.||+.+...... .......+.+.++++.++|.+..++.+ ..|||||||||+
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~ 147 (214)
T TIGR02673 75 PLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG-KKEREIQRRVGAALRQVGLEHKADAFP------EQLSGGEQQRVA 147 (214)
T ss_pred HHHHhheEEEecChhhccCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHHH
Confidence 12468999999999999999999988654321 111233457889999999988777654 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++..+||++++|++|+
T Consensus 148 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999999987789999988887 57888999999999985
No 95
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-44 Score=359.19 Aligned_cols=219 Identities=23% Similarity=0.292 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|.+. ..+.+|+|+|++|++||++||+|+||||||||+++|+|+++|.. |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13650 4 IIEVKNLTFKYKED--QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES---GQIIIDGDLLTEENVWD 78 (279)
T ss_pred eEEEEeEEEEcCCC--CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEECCcCcHHH
Confidence 58999999999531 12459999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCc-ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 PYGSYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 ~~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++ .+++..||+||+.+...... ....+..+++.++++.+||.+..++.+ ..|||||||||+|
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGq~qrv~l 151 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG-IPHEEMKERVNEALELVGMQDFKEREP------ARLSGGQKQRVAI 151 (279)
T ss_pred HHhhceEEEcChHHhcccccHHHHHHhhHHhCC-CCHHHHHHHHHHHHHHCCCHhHhhCCc------ccCCHHHHHHHHH
Confidence 124689999997 46677899999988643321 112234567899999999998877754 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|+.. ++ ..||++++|++|+++..|+++++..
T Consensus 152 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 152 AGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999999999999999999999999999999865 999999999874 56 5799999999999999999987653
No 96
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-44 Score=354.02 Aligned_cols=212 Identities=26% Similarity=0.331 Sum_probs=182.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (513)
++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+.......++
T Consensus 2 l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYG-----GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQH---GSITLDGKPVEGPGAERG 73 (255)
T ss_pred EEEEEEEEEeC-----CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCCcEE
Confidence 68999999984 2469999999999999999999999999999999999999875 999999987643334689
Q ss_pred EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
|++|++.+++.+||.||+.+...... ....+..+++.++++.++|.+..++.+ ..|||||||||+|||||+.+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAG-VEKMQRLEIAHQMLKKVGLEGAEKRYI------WQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCChhHhhCCh------hhCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999987643321 111233456889999999988777654 49999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEe--CCeEEEEeChH
Q 010314 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETL 333 (513)
Q Consensus 266 P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~--~G~iv~~G~~~ 333 (513)
|++|||||||+|||+.++..+.+.|+++++ .|+|||+++|++ .++..+||++++|+ +|+++..++..
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999999999999864 589999988887 57889999999998 59999887653
No 97
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=8.4e-44 Score=353.35 Aligned_cols=216 Identities=25% Similarity=0.338 Sum_probs=184.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 72 (252)
T TIGR03005 1 VRFSDVTKRFG-----ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDE---GQIQVEGEQLYHMPGRNG 72 (252)
T ss_pred CEEEEEEEEeC-----CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccccccc
Confidence 46899999984 2469999999999999999999999999999999999998875 999999986521
Q ss_pred ------------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCC
Q 010314 180 ------------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (513)
Q Consensus 180 ------------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~ 247 (513)
..+.++|++|++.+++.+||.||+.+..............+.+.++++.+|+.+..++.+ ..
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~ 146 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMP------AQ 146 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcCh------hh
Confidence 134699999999999999999999875321111111233456889999999988877654 49
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++ |.|+|+++|++ .++..+||++++|++|++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i 225 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDKGRI 225 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865 89999988887 578889999999999999
Q ss_pred EEEeChHHHH
Q 010314 327 LFFGETLACL 336 (513)
Q Consensus 327 v~~G~~~~~~ 336 (513)
++.|+.+++.
T Consensus 226 ~~~g~~~~~~ 235 (252)
T TIGR03005 226 VEQGKPDEIF 235 (252)
T ss_pred EEeCCHHHHh
Confidence 9999887653
No 98
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=5.1e-44 Score=345.62 Aligned_cols=206 Identities=27% Similarity=0.342 Sum_probs=176.4
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|. .+.+|+++||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03262 1 IEIKNLHKSFG-----DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS---GTIIIDGLKLTDDKKNIN 72 (213)
T ss_pred CEEEEEEEEEC-----CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCccchhHH
Confidence 46899999984 2469999999999999999999999999999999999999875 999999987531
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++.+++.+|+.||+.+...........+..+.+.++++.+++.+..++.+ ++|||||||||+|
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~l 146 (213)
T cd03262 73 ELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP------AQLSGGQQQRVAI 146 (213)
T ss_pred HHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc------cccCHHHHHHHHH
Confidence 124699999999999999999999875421111111234456888999999988777754 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||+++|++ .++.++||++++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999987789999988886 578899999999999974
No 99
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.4e-43 Score=348.54 Aligned_cols=215 Identities=26% Similarity=0.384 Sum_probs=183.4
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
++++|+++.|. .+.+|+++||.+++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~i~~~~~~~~ 73 (236)
T TIGR03864 2 LEVAGLSFAYG-----ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQE---GQISVAGHDLRRAPRAAL 73 (236)
T ss_pred EEEEeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEcccCChhhh
Confidence 67899999984 3469999999999999999999999999999999999999875 999999986432 12
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+|+.||+.+....... ......+.+.++++.+||.+..++.+ ..|||||||||+||||
T Consensus 74 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrl~lara 146 (236)
T TIGR03864 74 ARLGVVFQQPTLDLDLSVRQNLRYHAALHGL-SRAEARERIAALLARLGLAERADDKV------RELNGGHRRRVEIARA 146 (236)
T ss_pred hhEEEeCCCCCCcccCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCChhhhcCCh------hhCCHHHHHHHHHHHH
Confidence 4699999999888899999999876543211 11223456788999999988777754 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||+|||+.++..+.+.|+++++ +|.|+|+++|+.. .+. .||++++|++|++++.|+++++..
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999999999999999999985 5899999998874 565 599999999999999998877653
No 100
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-44 Score=353.48 Aligned_cols=217 Identities=22% Similarity=0.289 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++|+++.|. .+.+|+++||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 76 (255)
T PRK11300 5 LLSVSGLMMRFG-----GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTG---GTILLRGQHIEGLPGHQ 76 (255)
T ss_pred eEEEeeEEEEEC-----CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCc---ceEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999999875 9999999875321
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcC-----------C---CchhhHHHHHHHHHHHcCChhHHhhhhcCCCC
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL-----------P---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY 244 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-----------~---~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~ 244 (513)
...++|++|++.+++.+||.||+.+...... + ....+....+.++++.+||.+..++.+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 151 (255)
T PRK11300 77 IARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA----- 151 (255)
T ss_pred HHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh-----
Confidence 2358999999999999999999987542110 0 000122346788899999988777754
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 245 ~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||+++|+. .++.++||++++|++
T Consensus 152 -~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 152 -GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQ 229 (255)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 499999999999999999999999999999999999999999999999875 89999988886 578899999999999
Q ss_pred CeEEEEeChHHHH
Q 010314 324 GNTLFFGETLACL 336 (513)
Q Consensus 324 G~iv~~G~~~~~~ 336 (513)
|++++.|+++++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999987653
No 101
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-44 Score=350.53 Aligned_cols=214 Identities=19% Similarity=0.288 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|. .+.+|+++||.+++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 5 MLSFDKVSAHYG-----KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATS---GRIVFDGKDITDWQTAK 76 (237)
T ss_pred EEEEEeEEEeeC-----CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---ceEEECCEecCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999999875 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHc-CChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAM-SLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~-~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++.+||.||+.+..... . .....+.++++++.+ ++.+..++. +..|||||||||+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~-~~~~~~~~~~~l~~~~~l~~~~~~~------~~~LS~G~~qrl~ 147 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFA--E-RDQFQERIKWVYELFPRLHERRIQR------AGTMSGGEQQMLA 147 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhcc--C-hhHHHHHHHHHHHHHHHHHHHHhCc------hhhCCHHHHHHHH
Confidence 1246999999999999999999998754221 1 112234567778877 476666554 4599999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 148 la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 148 IGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 99999999999999999999999999999999999987799999988886 5789999999999999999999988764
No 102
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-44 Score=355.81 Aligned_cols=208 Identities=25% Similarity=0.353 Sum_probs=181.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++||++.|. .+.+|+|+||.+.+||+++|+||||||||||+++|+|+++|++ |+|.++|.+.....+.
T Consensus 11 ~~l~i~~l~~~~~-----~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~---G~i~~~g~~~~~~~~~ 82 (257)
T PRK11247 11 TPLLLNAVSKRYG-----ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSA---GELLAGTAPLAEARED 82 (257)
T ss_pred CcEEEEEEEEEEC-----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEHHHhhCc
Confidence 4689999999984 3469999999999999999999999999999999999999875 9999999765433457
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~ 263 (513)
++|++|++.+++.+||+||+.+... . ....++.++++.++|.+..++.+ ..|||||||||+|||+|+
T Consensus 83 i~~v~q~~~l~~~~tv~enl~~~~~----~---~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGqkqrl~laraL~ 149 (257)
T PRK11247 83 TRLMFQDARLLPWKKVIDNVGLGLK----G---QWRDAALQALAAVGLADRANEWP------AALSGGQKQRVALARALI 149 (257)
T ss_pred eEEEecCccCCCCCcHHHHHHhccc----c---hHHHHHHHHHHHcCChhHhcCCh------hhCCHHHHHHHHHHHHHh
Confidence 9999999999998999999976421 1 12356788999999988777654 499999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||+++|+. ..+..+||++++|++|++++.|+.+
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999865 589999988886 4788899999999999999887653
No 103
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-44 Score=345.32 Aligned_cols=207 Identities=29% Similarity=0.420 Sum_probs=177.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----C
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----Y 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----~ 181 (513)
++++|+++.|. .+.+|+|+||++++| +++|+||||||||||+++|+|+++|+. |+|.++|.+.... .
T Consensus 1 i~~~~~~~~~~-----~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 71 (211)
T cd03264 1 LQLENLTKRYG-----KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSS---GTIRIDGQDVLKQPQKLR 71 (211)
T ss_pred CEEEEEEEEEC-----CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCCccccchHHHH
Confidence 46899999984 246999999999999 999999999999999999999999875 9999999764321 3
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+||.||+.+....... ...+..+.+.++++.++|.+..++.+ ..|||||||||+||||
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~a 144 (211)
T cd03264 72 RRIGYLPQEFGVYPNFTVREFLDYIAWLKGI-PSKEVKARVDEVLELVNLGDRAKKKI------GSLSGGMRRRVGIAQA 144 (211)
T ss_pred hheEEecCCCcccccCCHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHCCCHHHHhCch------hhCCHHHHHHHHHHHH
Confidence 5689999999999999999999876543311 11233456889999999998877754 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||+++|+. ..+.++||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999976 58999988876 5788899999999999998764
No 104
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-43 Score=347.27 Aligned_cols=215 Identities=24% Similarity=0.269 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++.|.++. ..+.+|+++||++++||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 5 ~l~~~~l~~~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~i~~~~~~~ 80 (233)
T PRK11629 5 LLQCDNLCKRYQEGS-VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS---GDVIFNGQPMSKLSSAA 80 (233)
T ss_pred eEEEEeEEEEcCCCC-cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCCHHH
Confidence 589999999985321 11469999999999999999999999999999999999998874 9999999875321
Q ss_pred -----CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++.+||+||+.+....... ...+..+++.++++.+||.+..++.+ .+||||||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgG~~qr 153 (233)
T PRK11629 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKK-KPAEINSRALEMLAAVGLEHRANHRP------SELSGGERQR 153 (233)
T ss_pred HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHH
Confidence 14699999999999999999999886543211 11233457889999999988777654 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
|+|||||+.+|+||||||||+|||+.++..+.+.|+++++ .|+|||+++|+.. ++.. +|++++|++|++++.++.
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999999975 5899999999874 5655 579999999999988763
No 105
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.1e-44 Score=345.63 Aligned_cols=202 Identities=21% Similarity=0.322 Sum_probs=171.9
Q ss_pred EEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceE
Q 010314 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSY 184 (513)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~ 184 (513)
+++|+++.|.+ .+.+|+++||++++||+++|+|||||||||||++|+|+++|++ |+|.++|.+... ..+.+
T Consensus 1 ~~~~l~~~~~~----~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~i 73 (205)
T cd03226 1 RIENISFSYKK----GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS---GSILLNGKPIKAKERRKSI 73 (205)
T ss_pred CcccEEEEeCC----cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEhhhHHhhcce
Confidence 36789998842 1469999999999999999999999999999999999999875 999999987521 23469
Q ss_pred EEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 010314 185 GFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (513)
Q Consensus 185 ~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~ 263 (513)
+|++|++. .+..+||.||+.+..... . ...+++.++++.++|.+..++.+ ..|||||||||+|||||+
T Consensus 74 ~~~~q~~~~~~~~~tv~e~l~~~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral~ 142 (205)
T cd03226 74 GYVMQDVDYQLFTDSVREELLLGLKEL--D---AGNEQAETVLKDLDLYALKERHP------LSLSGGQKQRLAIAAALL 142 (205)
T ss_pred EEEecChhhhhhhccHHHHHhhhhhhc--C---ccHHHHHHHHHHcCCchhcCCCc------hhCCHHHHHHHHHHHHHH
Confidence 99999974 234679999997754321 1 12356889999999988877754 499999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (513)
.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ .++..+||++++|++|++|
T Consensus 143 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 143 SGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred hCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999999987799999988886 5788899999999999975
No 106
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.2e-43 Score=346.40 Aligned_cols=214 Identities=27% Similarity=0.304 Sum_probs=176.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|.++. ....+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 2 l~~~~v~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (228)
T cd03257 2 LEVKNLSVSFPTGG-GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTS---GSIIFDGKDLLKLSRRLR 77 (228)
T ss_pred eEEEeeeEeccCCC-cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEccccchhhH
Confidence 68999999985311 11269999999999999999999999999999999999998875 999999987532
Q ss_pred --CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHH-HHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHH
Q 010314 180 --PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNV-VEDAIHAMSLS-DYANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 180 --~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~-v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqr 253 (513)
.++.++|++|++ .+++.+||+||+.+................ +.++++.+++. ...++.+ ..||||||
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LS~G~~ 151 (228)
T cd03257 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYP------HELSGGQR 151 (228)
T ss_pred HHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCc------hhcCHHHH
Confidence 124699999998 567789999999876443221111111122 35789999995 5666644 49999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||+++|+. ..+..+||++++|++|+++..|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999999865 89999988887 5788899999999999998654
No 107
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.2e-43 Score=345.68 Aligned_cols=207 Identities=24% Similarity=0.321 Sum_probs=178.0
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|.+ .+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 74 (222)
T PRK10908 2 IRFEHVSKAYLG----GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSA---GKIWFSGHDITRLKNREV 74 (222)
T ss_pred EEEEeeEEEecC----CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEcccCChhHH
Confidence 689999999842 2469999999999999999999999999999999999999875 999999986532
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++.+|+.||+.+....... ...+..+.+.++++.+++.+..++.+ ..|||||||||+
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ 147 (222)
T PRK10908 75 PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGA-SGDDIRRRVSAALDKVGLLDKAKNFP------IQLSGGEQQRVG 147 (222)
T ss_pred HHHHhheEEEecCccccccccHHHHHHhHHHhcCC-CHHHHHHHHHHHHHHcCChhhhhCCc------hhCCHHHHHHHH
Confidence 124689999999988899999999876543211 11233456788999999988777654 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (513)
|||||+.+|++|||||||+|||+.++..++++|++++++|.|+|+++|++ .++..+||++++|++|+++
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDI-GLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999999999999987789999988886 5788899999999999985
No 108
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-43 Score=356.18 Aligned_cols=222 Identities=22% Similarity=0.269 Sum_probs=184.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
|.++++||++.|.+.....+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 1 ~~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~ 77 (280)
T PRK13649 1 MGINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ---GSVRVDDTLITSTSKN 77 (280)
T ss_pred CeEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccccc
Confidence 3588999999995321112469999999999999999999999999999999999999875 999999987532
Q ss_pred -----CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHH
Q 010314 180 -----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 180 -----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGG 251 (513)
..+.++|++|++ .+++ .||+||+.+....... ...+..+.++++++.++|. ...++.+ .+||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG 149 (280)
T PRK13649 78 KDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGV-SQEEAEALAREKLALVGISESLFEKNP------FELSGG 149 (280)
T ss_pred cCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCChhhhhCCc------ccCCHH
Confidence 124689999996 4555 6999999876432211 1123345678899999997 4566644 499999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
|||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||+++|++ .++..+||++++|++|++++.|+
T Consensus 150 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~ 228 (280)
T PRK13649 150 QMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSGK 228 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987789999988886 57889999999999999999999
Q ss_pred hHHHHH
Q 010314 332 TLACLQ 337 (513)
Q Consensus 332 ~~~~~~ 337 (513)
++++..
T Consensus 229 ~~~~~~ 234 (280)
T PRK13649 229 PKDIFQ 234 (280)
T ss_pred HHHHhc
Confidence 887643
No 109
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6.3e-44 Score=378.69 Aligned_cols=229 Identities=25% Similarity=0.326 Sum_probs=198.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKSE---- 178 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~-~~~~G~I~i~G~~~~---- 178 (513)
..|+++||++.|... .....+++||||++.+||++||+|.|||||||++++|.|++++. ...+|+|.++|.+..
T Consensus 4 ~lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 4 PLLEVENLTVEFATD-GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred ceEEEeceEEEEecC-CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 378999999999754 22357999999999999999999999999999999999999987 345799999997531
Q ss_pred -----CCCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH
Q 010314 179 -----MPYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 179 -----~~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG 251 (513)
...+.++|+||++ .+.|.+||.+.+......+......+.++++.++|+.+||.+-... ..||++||||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~----~~yPheLSGG 158 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR----DRYPHQLSGG 158 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh----ccCCcccCch
Confidence 1235799999995 6788899999998776666543345677889999999999865544 3489999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|++||++ ..+.++||||+||++|++|+.|
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G 237 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETG 237 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999985 599999988876 6899999999999999999999
Q ss_pred ChHHHHHH
Q 010314 331 ETLACLQH 338 (513)
Q Consensus 331 ~~~~~~~~ 338 (513)
++++++..
T Consensus 238 ~~~~i~~~ 245 (539)
T COG1123 238 PTEEILSN 245 (539)
T ss_pred CHHHHHhc
Confidence 99998764
No 110
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.5e-43 Score=349.35 Aligned_cols=215 Identities=23% Similarity=0.337 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 ~i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 73 (242)
T TIGR03411 2 ILYLEGLSVSFD-----GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDE---GSVLFGGTDLTGLPEHQ 73 (242)
T ss_pred eEEEEeeEEEcC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCeecCCCCHHH
Confidence 478999999984 3469999999999999999999999999999999999999875 999999986532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcC-------CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQL-------PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-------~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG 251 (513)
..+.++|++|++.+++.+||+||+.+...... ........++++++++.+|+.+..++.+ ..||||
T Consensus 74 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G 147 (242)
T TIGR03411 74 IARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA------GLLSHG 147 (242)
T ss_pred HHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHH
Confidence 12359999999999999999999987543110 0011223456889999999988777654 499999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
|||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ ++|||+++|+. +++.++||++++|++|++++.|+
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~ 225 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGS 225 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCC
Confidence 99999999999999999999999999999999999999999976 68999988886 57889999999999999999998
Q ss_pred hHHH
Q 010314 332 TLAC 335 (513)
Q Consensus 332 ~~~~ 335 (513)
++++
T Consensus 226 ~~~~ 229 (242)
T TIGR03411 226 LDQV 229 (242)
T ss_pred HHHH
Confidence 7765
No 111
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-43 Score=363.33 Aligned_cols=228 Identities=20% Similarity=0.187 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~-~~~G~I~i~G~~~~~~--- 180 (513)
.|+++||++.|..+. ....+|+||||+|.+||+++|+|+||||||||+++|+|++++.. ..+|+|.++|+++...
T Consensus 3 ~L~v~~l~~~y~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNLTIEFKTSD-GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeeeEEEEeCCC-CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 589999999995321 23469999999999999999999999999999999999987421 2359999999875321
Q ss_pred ------CceEEEEcCCcc--cCCCCCHHHHHHHHHHhc-C-C---CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCC
Q 010314 181 ------YGSYGFVERETT--LIGSLTVREYLYYSALLQ-L-P---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (513)
Q Consensus 181 ------~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~-~-~---~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~ 247 (513)
.+.++||+|++. ++|.+||.+++.+..... . . ....+..+++.++|+.+||.+..+.. +.+|++
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~---~~~p~~ 158 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM---RSFPYE 158 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH---hCCchh
Confidence 236999999975 678899999997643211 1 0 01123346788999999997532211 236779
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|||||||||+|||||+.+|+||||||||+|||+.++.+++++|+++.++ |.|||+++|+. ..+.++||+|++|++|++
T Consensus 159 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~i 237 (330)
T PRK15093 159 LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQT 237 (330)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875 89999988886 578899999999999999
Q ss_pred EEEeChHHHHH
Q 010314 327 LFFGETLACLQ 337 (513)
Q Consensus 327 v~~G~~~~~~~ 337 (513)
++.|++++++.
T Consensus 238 ve~g~~~~i~~ 248 (330)
T PRK15093 238 VETAPSKELVT 248 (330)
T ss_pred EEECCHHHHHh
Confidence 99999887653
No 112
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3.7e-44 Score=346.93 Aligned_cols=207 Identities=29% Similarity=0.425 Sum_probs=172.8
Q ss_pred EEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEE
Q 010314 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFV 187 (513)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv 187 (513)
++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+.....+.++|+
T Consensus 2 ~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSYG-----GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTS---GSIRVFGKPLEKERKRIGYV 73 (213)
T ss_pred cccceeEEC-----CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCccHHHHHhheEEe
Confidence 678998884 2469999999999999999999999999999999999999875 99999997643223569999
Q ss_pred cCCcccC--CCCCHHHHHHHHHHhcCC---CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 188 ERETTLI--GSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 188 ~Q~~~l~--~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
+|++.++ ..+||.||+.+....... .......++++++++.+++.+..++.+ ..|||||||||+|||||
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~la~al 147 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI------GELSGGQQQRVLLARAL 147 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc------ccCCHHHHHHHHHHHHH
Confidence 9998763 347999999875322110 011223456889999999988777754 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. +++.++||++++|++| +++.|
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999999987789999988886 5788999999999875 66554
No 113
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-43 Score=371.28 Aligned_cols=222 Identities=26% Similarity=0.331 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEeccc-------------------cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC
Q 010314 105 SVVWKDLTVTIKGKR-------------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~-------------------~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~ 165 (513)
.|+++||++.|.... .+...+|+|+||++++||+++|+||||||||||+++|+|+++|++
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s- 82 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR- 82 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC-
Confidence 477788887774321 112348999999999999999999999999999999999999975
Q ss_pred ceeEEEECCEeCCCC---------CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHh
Q 010314 166 MYGEVFVNGAKSEMP---------YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYAN 236 (513)
Q Consensus 166 ~~G~I~i~G~~~~~~---------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~ 236 (513)
|+|.++|.++... .+.++|++|++.+++.+||+||+.+........ ..+..+++.++++.+||.+..+
T Consensus 83 --G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~-~~~~~~~~~e~L~~~gL~~~~~ 159 (400)
T PRK10070 83 --GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGIN-AEERREKALDALRQVGLENYAH 159 (400)
T ss_pred --CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCChhhh
Confidence 9999999875321 246999999999999999999998876443211 1234567889999999998877
Q ss_pred hhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcC
Q 010314 237 KLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLF 315 (513)
Q Consensus 237 ~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~ 315 (513)
+. +++|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ .|+|||+++|+. +++..+|
T Consensus 160 ~~------~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~ 232 (400)
T PRK10070 160 SY------PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIG 232 (400)
T ss_pred cC------cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhC
Confidence 74 459999999999999999999999999999999999999999999999975 589999988886 5788999
Q ss_pred CEEEEEeCCeEEEEeChHHHHH
Q 010314 316 DRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 316 D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|++++|++|+++..|+++++..
T Consensus 233 Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 233 DRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred CEEEEEECCEEEecCCHHHHHh
Confidence 9999999999999999887643
No 114
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2.1e-43 Score=343.47 Aligned_cols=209 Identities=24% Similarity=0.335 Sum_probs=175.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++|+++.|.++. ..+.+|+++||++++|++++|+||||||||||+++|+|+++|.. |+|.++|.+....
T Consensus 2 l~~~~v~~~~~~~~-~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (221)
T TIGR02211 2 LKCENLGKRYQEGK-LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTS---GEVLFNGQSLSKLSSNER 77 (221)
T ss_pred EEEEeeeEEccCCC-cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEhhhcCHhHH
Confidence 67899999985321 12469999999999999999999999999999999999999875 9999999874321
Q ss_pred ----CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 181 ----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
.+.++|++|++.+++.+||+||+.+........ ..+..+.+.++++.+||.+..++.+ ..|||||||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv 150 (221)
T TIGR02211 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKS-VKEAKERAYEMLEKVGLEHRINHRP------SELSGGERQRV 150 (221)
T ss_pred HHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCChhhhhCCh------hhCCHHHHHHH
Confidence 146999999999999999999998765432111 1223456789999999988777754 49999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (513)
+|||+|+.+|+||||||||+|||+.++..+.+.|++++++ |.|||+++|+.. .+. .||++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHh-hcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999864 899999888874 554 58999999999975
No 115
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.9e-43 Score=368.64 Aligned_cols=204 Identities=26% Similarity=0.352 Sum_probs=178.4
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----CCC---------CCceEEEEc
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK----SEM---------PYGSYGFVE 188 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~----~~~---------~~~~~~yv~ 188 (513)
...+|+|+||++++||+++|+|+||||||||+++|+|+++|+. |+|+++|++ ... ..+.++|++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~---G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSR---GSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 4578999999999999999999999999999999999999975 999999962 211 114699999
Q ss_pred CCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 010314 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHV 268 (513)
Q Consensus 189 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~i 268 (513)
|++.++|.+||.||+.++...... ...+..+++.++++.+||.+..++.+ .+|||||||||+|||||+.+|+|
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~g~-~~~~~~~~a~e~le~vgL~~~~~~~~------~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQGM-PEAERRKRVDEQLELVGLAQWADKKP------GELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999987543321 11344567899999999998877754 49999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 269 LFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 269 LllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||||+|||+.++..+.+.|.+++++ ++|||+++|+. +++.++||+|++|++|+++..|+++++.
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999865 89999988886 5789999999999999999999998875
No 116
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-43 Score=350.68 Aligned_cols=216 Identities=26% Similarity=0.345 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||++.|. ++.+|+|+||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~---G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 2 MLEARNLSVRLG-----GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDS---GEVRLNGRPLADWSPAE 73 (258)
T ss_pred eEEEEeEEEEeC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEEcccCCHHH
Confidence 478999999984 3469999999999999999999999999999999999998875 999999986432
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
..+.++|++|++.+++.+||+||+.+....... ......+.+.++++.++|.+..++.+ ..|||||||||+||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGe~qrv~la 146 (258)
T PRK13548 74 LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL-SRAEDDALVAAALAQVDLAHLAGRDY------PQLSGGEQQRVQLA 146 (258)
T ss_pred hhhheEEEccCCcCCCCCCHHHHHHhhhcccCC-CcHHHHHHHHHHHHHcCCHhHhcCCc------ccCCHHHHHHHHHH
Confidence 124689999999888889999999875422111 11223456789999999988777754 49999999999999
Q ss_pred HHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 260 RELV------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 260 raL~------~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
|||+ .+|++|||||||+|||+.++..+++.|++++ +.|.|||+++|++ .++..+||++++|++|++++.|++
T Consensus 147 ~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~ 225 (258)
T PRK13548 147 RVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGTP 225 (258)
T ss_pred HHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCCH
Confidence 9999 5999999999999999999999999999998 6689999988886 578889999999999999999988
Q ss_pred HHHH
Q 010314 333 LACL 336 (513)
Q Consensus 333 ~~~~ 336 (513)
+++.
T Consensus 226 ~~~~ 229 (258)
T PRK13548 226 AEVL 229 (258)
T ss_pred HHHh
Confidence 7654
No 117
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-43 Score=355.51 Aligned_cols=218 Identities=23% Similarity=0.329 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|.+ ++.+|+|+||++++||+++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~~----~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~---G~i~i~g~~~~~~~~~~ 77 (283)
T PRK13636 5 ILKVEELNYNYSD----GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS---GRILFDGKPIDYSRKGL 77 (283)
T ss_pred eEEEEeEEEEeCC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---cEEEECCEECCCCcchH
Confidence 6899999999942 2469999999999999999999999999999999999999875 999999987531
Q ss_pred --CCceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 --PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 --~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|++. .+...||+||+.+...... ....+..++++++++.+||.+..++.+ ..||||||||+
T Consensus 78 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LS~G~~qrl 150 (283)
T PRK13636 78 MKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLK-LPEDEVRKRVDNALKRTGIEHLKDKPT------HCLSFGQKKRV 150 (283)
T ss_pred HHHHhhEEEEecCcchhhccccHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHCCChhhhhCCc------ccCCHHHHHHH
Confidence 1246999999973 2335799999987643221 111233467899999999998877754 49999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
+|||||+.+|+||||||||+|||+.++..++++|++++++ |+|||+++|+. +++..+||++++|++|++++.|++++.
T Consensus 151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~ 229 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEV 229 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999865 89999988886 578889999999999999999999886
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
..
T Consensus 230 ~~ 231 (283)
T PRK13636 230 FA 231 (283)
T ss_pred hc
Confidence 54
No 118
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-43 Score=349.54 Aligned_cols=219 Identities=21% Similarity=0.270 Sum_probs=181.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 6 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (254)
T PRK14273 6 AIIETENLNLFYT-----DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN 80 (254)
T ss_pred ceEEEeeeEEEeC-----CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccc
Confidence 3689999999984 2469999999999999999999999999999999999998631 125999999986421
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh----hHHhhhhcCCCCCCCCCH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~vg~~~~~~~LSG 250 (513)
..+.++|++|++.+++ +||+||+.+..............+.+.++++.+++. +..++ .+.+|||
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~------~~~~LSg 153 (254)
T PRK14273 81 FDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNT------NALSLSG 153 (254)
T ss_pred ccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhC------CcccCCH
Confidence 1346999999988885 899999987653321111122345678889999884 33444 4569999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||||+|||+|+.+|+||||||||+|||+.++..++++|+++++ +.|||+++|++ .++..+||++++|++|+++..|
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999964 78999988886 5788999999999999999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
++.++.
T Consensus 232 ~~~~~~ 237 (254)
T PRK14273 232 STDELF 237 (254)
T ss_pred CHHHHH
Confidence 988764
No 119
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-43 Score=353.57 Aligned_cols=215 Identities=20% Similarity=0.282 Sum_probs=182.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++||++.|. ++.+|+|+||++.+|++++|+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 2 l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~~ 73 (271)
T PRK13638 2 LATSDLWFRYQ-----DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQK---GAVLWQGKPLDYSKRGLL 73 (271)
T ss_pred eEEEEEEEEcC-----CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCc---cEEEECCEEcccccCCHH
Confidence 68999999984 3469999999999999999999999999999999999999875 999999987531
Q ss_pred -CCceEEEEcCCccc-CCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 -PYGSYGFVERETTL-IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l-~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.++.++|++|++.+ +...|+.+|+.+...... ....+..+.+.++++.++|.+..++.+ ..|||||||||+
T Consensus 74 ~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrl~ 146 (271)
T PRK13638 74 ALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG-VPEAEITRRVDEALTLVDAQHFRHQPI------QCLSHGQKKRVA 146 (271)
T ss_pred HHHhheEEEeeChhhccccccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHhHhcCCc------hhCCHHHHHHHH
Confidence 12469999999753 345689999987543221 111233456788999999988877654 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..+.+.|++++++|.|||+++|+. .++..+||++++|++|++++.|+++++.
T Consensus 147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999987789999988886 5788999999999999999999988764
No 120
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.1e-43 Score=342.94 Aligned_cols=208 Identities=24% Similarity=0.341 Sum_probs=182.0
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CceE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSY 184 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~~ 184 (513)
++++|+++.|. .+.+|+|+||.+++||+++|+||||||||||+++|+|+++|+. |+|.++|.+.... .+.+
T Consensus 1 l~l~~v~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~~~~~~~~~~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRFG-----KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS---GEIIFDGHPWTRKDLHKI 72 (223)
T ss_pred CEEEeEEEEEC-----CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEeccccccccE
Confidence 46899999884 3469999999999999999999999999999999999999875 9999999864322 2469
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~ 264 (513)
+|++|++.+++.+|++||+.+...... .....+.++++.++|.+..++.+. .||||||||++|||||+.
T Consensus 73 ~~~~q~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~------~LS~G~~~rv~laral~~ 141 (223)
T TIGR03740 73 GSLIESPPLYENLTARENLKVHTTLLG-----LPDSRIDEVLNIVDLTNTGKKKAK------QFSLGMKQRLGIAIALLN 141 (223)
T ss_pred EEEcCCCCccccCCHHHHHHHHHHHcC-----CCHHHHHHHHHHcCCcHHHhhhHh------hCCHHHHHHHHHHHHHhc
Confidence 999999999999999999987653321 113457889999999988877554 999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
+|++|||||||+|||+.++..+++.|++++++|.|||+++|++ .++.++||++++|++|+++..|++.
T Consensus 142 ~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 142 HPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChh
Confidence 9999999999999999999999999999987789999999987 4788999999999999999998864
No 121
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2.8e-43 Score=351.68 Aligned_cols=219 Identities=25% Similarity=0.396 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++.|. ++.+|+++||++.+||+++|+||||||||||+++|+|+++|+...+|+|+++|.+....
T Consensus 4 ~l~~~nl~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~ 78 (262)
T PRK09984 4 IIRVEKLAKTFN-----QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78 (262)
T ss_pred EEEEeeEEEEeC-----CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence 689999999984 35699999999999999999999999999999999999987532359999999864210
Q ss_pred ------CceEEEEcCCcccCCCCCHHHHHHHHHHhcC-------CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCC
Q 010314 181 ------YGSYGFVERETTLIGSLTVREYLYYSALLQL-------PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (513)
Q Consensus 181 ------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-------~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~ 247 (513)
.+.++|++|++.+++.+||.||+.+...... .....+...++.++++.++|.+..++.+ ..
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~ 152 (262)
T PRK09984 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV------ST 152 (262)
T ss_pred hhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc------cc
Confidence 2358999999999999999999977532100 0001233457889999999988777755 49
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ .|.|||+++|++ ..+..+||++++|++|++
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~i 231 (262)
T PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGHV 231 (262)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999986 489999988887 478899999999999999
Q ss_pred EEEeChHHH
Q 010314 327 LFFGETLAC 335 (513)
Q Consensus 327 v~~G~~~~~ 335 (513)
++.|++++.
T Consensus 232 ~~~g~~~~~ 240 (262)
T PRK09984 232 FYDGSSQQF 240 (262)
T ss_pred EEeCCHHHh
Confidence 999988653
No 122
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.6e-43 Score=347.40 Aligned_cols=216 Identities=19% Similarity=0.272 Sum_probs=179.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~---- 179 (513)
++++||++.|. .+.+|+|+||.+++||+++|+||||||||||+++|+|++ +|+ +|+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSVE-----DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEEC-----CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHH
Confidence 46899999984 346999999999999999999999999999999999995 565 4999999986432
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCC------CchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLP------GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~------~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSG 250 (513)
....++|++|++.+++.+|+.|++.+....... ....+..+++.++++.++|. +..++.+. ..|||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~LS~ 147 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN-----EGFSG 147 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc-----cCcCH
Confidence 123489999999999999999999775432110 01112345688999999997 45555332 25999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhc-CCEEEEEeCCeEEEE
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFF 329 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~~ 329 (513)
||||||+|||||+.+|++|||||||+|||+.++..++++|++++++|.|||+++|++ +.+..+ ||++++|++|++++.
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH-HHHHhhcCCeEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999999987789999999987 477777 899999999999999
Q ss_pred eChHHH
Q 010314 330 GETLAC 335 (513)
Q Consensus 330 G~~~~~ 335 (513)
|+++++
T Consensus 227 g~~~~~ 232 (243)
T TIGR01978 227 GDVELA 232 (243)
T ss_pred cCHHHh
Confidence 988753
No 123
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2.4e-43 Score=344.53 Aligned_cols=216 Identities=37% Similarity=0.584 Sum_probs=181.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC---CCCCceeEEEECCEeCCC--
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP---HSARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~---~~~~~~G~I~i~G~~~~~-- 179 (513)
.+.|+|+++.+++.+ ..+.+|+|+||++++||+++|+||||||||||+++|+|+++ |+ +|+|.++|.+...
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNWN-KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQ 78 (226)
T ss_pred cceeecceeeeecCc-cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHH
Confidence 468999999996421 13579999999999999999999999999999999999998 65 4999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc--hhhHHHHHHH-HHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVED-AIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~--~~~~~~~v~~-~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|++.+++.+||+||+.+......+.. .......+++ .++.+++.++.++.+ +.|||||+|||
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl 152 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV------KGISGGERRRV 152 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc------cCcCHHHHHHH
Confidence 23569999999999999999999988654332211 1122234555 899999987776644 49999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++.++|.|+|+++|+...++.++||++++|++|++++.|
T Consensus 153 ~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 153 SIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999998778999999998745789999999999999998765
No 124
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.4e-43 Score=342.16 Aligned_cols=205 Identities=27% Similarity=0.355 Sum_probs=172.2
Q ss_pred EEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----C
Q 010314 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----Y 181 (513)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~ 181 (513)
+++|+++.|.+. .+.+|+++||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+.... .
T Consensus 1 ~~~~l~~~~~~~---~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~ 74 (211)
T cd03225 1 ELKNLSFSYPDG---ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTS---GEVLVDGKDLTKLSLKELR 74 (211)
T ss_pred CceeEEEecCCC---CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEcccCCHHHHH
Confidence 367899988421 1469999999999999999999999999999999999999875 9999999865321 2
Q ss_pred ceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 182 GSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 182 ~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
+.++|++|++. .++.+||.||+.+....... ......+.+.++++.++|.+..++.+ ..|||||||||+|||
T Consensus 75 ~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~lar 147 (211)
T cd03225 75 RKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-PEEEIEERVEEALELVGLEGLRDRSP------FTLSGGQKQRVAIAG 147 (211)
T ss_pred hhceEEecChhhhcCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCcHhhhcCCc------ccCCHHHHHHHHHHH
Confidence 46899999974 35678999999875432211 11233456788999999988777654 499999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|++ .++..+||++++|++|+
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 148 VLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999987789999988886 57888999999999985
No 125
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.9e-43 Score=352.24 Aligned_cols=222 Identities=22% Similarity=0.279 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEeccc----cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 010314 105 SVVWKDLTVTIKGKR----RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (513)
.++++||++.|.... ...+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~ 78 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQ---GTVSFRGQDLYQL 78 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccc
Confidence 478999999995310 113579999999999999999999999999999999999999875 999999987532
Q ss_pred -------CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCC
Q 010314 180 -------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 -------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LS 249 (513)
..+.++|++|++ .+++.+||.||+.+..............+++.++++.++|. ...++.+ .+||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~------~~LS 152 (265)
T TIGR02769 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLP------RQLS 152 (265)
T ss_pred CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCCh------hhCC
Confidence 124699999996 46778999999976543211111123345688999999996 5666644 4999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|+. ..+..+||++++|++|++++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999865 89999988886 57888999999999999999
Q ss_pred EeChHHHH
Q 010314 329 FGETLACL 336 (513)
Q Consensus 329 ~G~~~~~~ 336 (513)
.|+++++.
T Consensus 232 ~g~~~~~~ 239 (265)
T TIGR02769 232 ECDVAQLL 239 (265)
T ss_pred ECCHHHHc
Confidence 99988764
No 126
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-43 Score=350.07 Aligned_cols=216 Identities=23% Similarity=0.350 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|. .+.+|+|+||++++|++++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~ 73 (255)
T PRK11231 2 TLRTENLTVGYG-----TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQS---GTVFLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEEeEEEEEC-----CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCC---cEEEECCEEhHHCCHHH
Confidence 588999999984 3469999999999999999999999999999999999998875 999999986421
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHH--hc-CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSAL--LQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~--~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|+..+++.+|+.||+.++.. .. ...........+.++++.++|.+..++.+ ..|||||||||
T Consensus 74 ~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv 147 (255)
T PRK11231 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL------TDLSGGQRQRA 147 (255)
T ss_pred HhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc------ccCCHHHHHHH
Confidence 12459999999988888999999987421 10 11111223456889999999988777754 49999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++ .++.++||++++|++|+++..|++++.
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 999999999999999999999999999999999999987789999988887 578899999999999999999988765
No 127
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-43 Score=347.88 Aligned_cols=223 Identities=21% Similarity=0.259 Sum_probs=181.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (513)
+.++++||++.|. .+.+|+++||++++||+++|+||||||||||+++|+|+.+ +....+|+|.++|++...
T Consensus 5 ~~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 5 PKMEARGLSFFYG-----DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred cEEEEeeeEEEEC-----CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 4689999999984 2469999999999999999999999999999999999864 100125999999987531
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
..+.++|++|++.+++ .||.||+.+..............++++++++.+++.+...... +..+..|||||||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgGq~q 156 (253)
T PRK14242 80 VDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRL--HESALGLSGGQQQ 156 (253)
T ss_pred cCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHh--hCCcccCCHHHHH
Confidence 1246999999998887 5999999876533211111223456888999999854322211 2245699999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
||+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||+++|+. .++.++||++++|++|+++..|++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQ 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999954 78999988887 57889999999999999999998876
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
+.
T Consensus 235 ~~ 236 (253)
T PRK14242 235 IF 236 (253)
T ss_pred HH
Confidence 53
No 128
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-43 Score=349.11 Aligned_cols=218 Identities=20% Similarity=0.298 Sum_probs=181.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|++++.. ..+|+|.++|.+...
T Consensus 11 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 11 PQIKVENLNLWYG-----EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred eeEEEeeeEEEeC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc
Confidence 4689999999884 3469999999999999999999999999999999999987510 125999999987421
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh----hHHhhhhcCCCCCCCCCH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~vg~~~~~~~LSG 250 (513)
..+.++|++|++.+++ +|++||+.+...... .......+.+.++++.+++. +..++ .+..|||
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LSg 157 (258)
T PRK14268 86 VDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHG-ANKKDLDGVVENALRSAALWDETSDRLKS------PALSLSG 157 (258)
T ss_pred chHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCCcchhhhhcC------ChhhCCH
Confidence 1246999999998888 899999987653321 11122345678899999984 33444 4459999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||||+|||||+.+|+||||||||+|||+.++..+++.|+++++ ++|||+++|+. .++.++||++++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNM-QQAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999964 78999988886 5788999999999999999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
+++++.
T Consensus 236 ~~~~~~ 241 (258)
T PRK14268 236 QTRQIF 241 (258)
T ss_pred CHHHHh
Confidence 987764
No 129
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-43 Score=348.59 Aligned_cols=223 Identities=25% Similarity=0.299 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCC---C
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSE---M 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~---~ 179 (513)
.++++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|+. ..+|+|.++|.+.. .
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (253)
T PRK14267 4 AIETVNLRVYYG-----SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78 (253)
T ss_pred eEEEEeEEEEeC-----CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 589999999984 2469999999999999999999999999999999999988730 12599999998753 1
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcC-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
..+.++|++|++.+++.+||.||+.+....+. ........+.+.++++.+++........ +..+..|||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~q 156 (253)
T PRK14267 79 DPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRL--NDYPSNLSGGQRQ 156 (253)
T ss_pred ChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhh--ccChhhCCHHHHH
Confidence 12469999999999999999999987653321 1111233456788999999853211111 2245699999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++..+||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999975 68999988886 57889999999999999999999877
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
+.
T Consensus 235 ~~ 236 (253)
T PRK14267 235 VF 236 (253)
T ss_pred HH
Confidence 64
No 130
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-43 Score=341.22 Aligned_cols=207 Identities=29% Similarity=0.360 Sum_probs=175.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
+.++|+++.|.+ +. .|+||++.+||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..+
T Consensus 1 i~~~~l~~~~~~-----~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~---G~i~~~g~~~~~~~~~~~ 70 (211)
T cd03298 1 VRLDKIRFSYGE-----QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS---GRVLINGVDVTAAPPADR 70 (211)
T ss_pred CEEEeEEEEeCC-----Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEEcCcCCHhHc
Confidence 468999998842 12 39999999999999999999999999999999999875 999999987532 234
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+||+||+.+........ ....++++.++++.++|.+..++.+ .+||||||||++|||||
T Consensus 71 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~ia~al 143 (211)
T cd03298 71 PVSMLFQENNLFAHLTVEQNVGLGLSPGLKL-TAEDRQAIEVALARVGLAGLEKRLP------GELSGGERQRVALARVL 143 (211)
T ss_pred cEEEEecccccCCCCcHHHHHhcccccccCc-cHHHHHHHHHHHHHcCCHHHHhCCc------ccCCHHHHHHHHHHHHH
Confidence 6999999999999999999997753221111 1233456889999999988877754 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
+.+|++|||||||+|||+.++..+++.|+++++ .|.|||+++|++ .++.++||++++|++|+++..|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999975 489999988886 5788999999999999998654
No 131
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-43 Score=352.83 Aligned_cols=215 Identities=25% Similarity=0.294 Sum_probs=182.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++||++.|.+ .+.+|+||||+|++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (274)
T PRK13644 2 IRLENVSYSYPD----GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQK---GKVLVSGIDTGDFSKLQG 74 (274)
T ss_pred EEEEEEEEEcCC----CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEECCccccHHH
Confidence 689999999842 2459999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 -YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.+.++|++|++. .+...||.||+.+...... ....+..+.+.++++.++|.+..++.+ ..|||||||||+|
T Consensus 75 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrv~l 147 (274)
T PRK13644 75 IRKLVGIVFQNPETQFVGRTVEEDLAFGPENLC-LPPIEIRKRVDRALAEIGLEKYRHRSP------KTLSGGQGQCVAL 147 (274)
T ss_pred HHhheEEEEEChhhhcccchHHHHHHhhHHHcC-CCHHHHHHHHHHHHHHCCCHHHhcCCc------ccCCHHHHHHHHH
Confidence 246999999975 3556899999987643321 111233456889999999998877754 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
||||+.+|+||||||||+|||+.++..+++.|++++++|.|||+++|+.. ++ ..||++++|++|++++.|+++++.
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999999877999999988874 56 569999999999999999988764
No 132
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-43 Score=351.53 Aligned_cols=216 Identities=26% Similarity=0.373 Sum_probs=184.0
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
+.++||++.|.+ .+.+|+|+||++++||+++|+||||||||||+++|+|++++.. |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (275)
T PRK13639 2 LETRDLKYSYPD----GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTS---GEVLIKGEPIKYDKKSLL 74 (275)
T ss_pred EEEEEEEEEeCC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEECccccchHH
Confidence 689999999842 2459999999999999999999999999999999999999875 999999987531
Q ss_pred -CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 -PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 -~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|++ .++ ..||.||+.+...... ....+..+++.++++.++|.++.++.+ .+||||||||+
T Consensus 75 ~~~~~i~~v~q~~~~~~~-~~tv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LS~Gq~qrv 146 (275)
T PRK13639 75 EVRKTVGIVFQNPDDQLF-APTVEEDVAFGPLNLG-LSKEEVEKRVKEALKAVGMEGFENKPP------HHLSGGQKKRV 146 (275)
T ss_pred HHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCCchhhcCCh------hhCCHHHHHHH
Confidence 124699999996 344 4699999987643211 111234456889999999998887754 49999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+|||||+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. ..+..+||++++|++|++++.|+++++.
T Consensus 147 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 147 AIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987799999988886 5788899999999999999999998875
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 226 ~ 226 (275)
T PRK13639 226 S 226 (275)
T ss_pred c
Confidence 3
No 133
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.8e-43 Score=344.70 Aligned_cols=211 Identities=20% Similarity=0.320 Sum_probs=179.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++||++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++|.+ |+|.++|.+...
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (230)
T TIGR03410 1 LEVSNLNVYYG-----QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKS---GSIRLDGEDITKLPPHER 72 (230)
T ss_pred CEEEeEEEEeC-----CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCCCHHHH
Confidence 46899999984 3469999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcC-ChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~-L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++.+++.+|+.||+.+....... ...+.+.++++.++ +.+..++. +..|||||||||+|
T Consensus 73 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~----~~~~~~~~~l~~~~~l~~~~~~~------~~~LS~G~~qrv~l 142 (230)
T TIGR03410 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAALPR----RSRKIPDEIYELFPVLKEMLGRR------GGDLSGGQQQQLAI 142 (230)
T ss_pred HHhCeEEeccCCcccCCCcHHHHHHHHHHhcCc----chHHHHHHHHHHHHhHHHHhhCC------hhhCCHHHHHHHHH
Confidence 124699999999999999999999876433211 12234577788776 55666664 45999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|+. +++..+||++++|++|++++.|+.+++
T Consensus 143 a~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 143 ARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999999999999874 89999988886 578889999999999999999988765
No 134
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.8e-44 Score=342.43 Aligned_cols=219 Identities=24% Similarity=0.389 Sum_probs=199.5
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-Cce
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGS 183 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~ 183 (513)
.+++++|+++| +.+++++|+||.+++|++++++|+|||||||++++|+|+++|+. |+|.++|.+.... ..+
T Consensus 2 ~L~ie~vtK~F-----g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~---G~I~~~g~~~~~~~~~r 73 (300)
T COG4152 2 ALEIEGVTKSF-----GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE---GEITWNGGPLSQEIKNR 73 (300)
T ss_pred ceEEecchhcc-----CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccC---ceEEEcCcchhhhhhhh
Confidence 58999999999 45689999999999999999999999999999999999999975 9999999876433 467
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~ 263 (513)
|||+|.+..|+|.+||.|.|.|.+.++.-. ..+.++.+..+|+++++.....+.+. +||.|++|++.+..+++
T Consensus 74 IGyLPEERGLy~k~tv~dql~yla~LkGm~-~~e~~~~~~~wLer~~i~~~~~~kIk------~LSKGnqQKIQfisavi 146 (300)
T COG4152 74 IGYLPEERGLYPKMTVEDQLKYLAELKGMP-KAEIQKKLQAWLERLEIVGKKTKKIK------ELSKGNQQKIQFISAVI 146 (300)
T ss_pred cccChhhhccCccCcHHHHHHHHHHhcCCc-HHHHHHHHHHHHHhccccccccchHH------HhhhhhhHHHHHHHHHh
Confidence 999999999999999999999988876322 24667789999999999988877665 99999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHh
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (513)
++|+++|||||+|||||.+.+.+-+.+.+++++|.|||+++|.. +.+.++||++++|++|+.|.+|+..++...|
T Consensus 147 HePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 147 HEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred cCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 99999999999999999999999999999999999999988876 6899999999999999999999999887644
No 135
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-43 Score=352.94 Aligned_cols=218 Identities=22% Similarity=0.267 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++.|.+ ..+.+|+|+||+|++||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 5 ~l~~~~l~~~~~~---~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~---G~i~~~g~~i~~~~~~~ 78 (279)
T PRK13635 5 IIRVEHISFRYPD---AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA---GTITVGGMVLSEETVWD 78 (279)
T ss_pred eEEEEEEEEEeCC---CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECCcCcHHH
Confidence 5899999999842 12459999999999999999999999999999999999999975 9999999875321
Q ss_pred -CceEEEEcCCc-ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 -YGSYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 -~~~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.+.++|++|++ .+++..||.||+.+...... ....+..+++.++++.+||.+..++.+ ..|||||||||+|
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LS~G~~qrv~l 151 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG-VPREEMVERVDQALRQVGMEDFLNREP------HRLSGGQKQRVAI 151 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhCC-CCHHHHHHHHHHHHHHcCChhhhhCCc------ccCCHHHHHHHHH
Confidence 24699999997 36667899999987643321 111234567899999999998888755 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||||+.+|+||||||||+|||+.++..++++|++++++ |+|||+++|++. ++. .||++++|++|++++.|+++++..
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999999875 899999999874 565 599999999999999999887653
No 136
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-43 Score=351.40 Aligned_cols=218 Identities=22% Similarity=0.326 Sum_probs=185.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 10 ~~l~i~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~ 81 (265)
T PRK10575 10 TTFALRNVSFRVP-----GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSE---GEILLDAQPLESWSSK 81 (265)
T ss_pred ceEEEeeEEEEEC-----CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCEehhhCCHH
Confidence 3689999999984 2469999999999999999999999999999999999998875 999999986421
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCC---CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|+..+++.+||.||+.+....... .......+++.++++.++|.+..++.+ ..||||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qr 155 (265)
T PRK10575 82 AFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV------DSLSGGERQR 155 (265)
T ss_pred HHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc------ccCCHHHHHH
Confidence 124699999998888899999999775321100 001123456889999999988777754 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+|||||+.+|+||||||||+|||+.++..++++|++++++ |.|||+++|+. .++.++||++++|++|++++.|++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999999999999765 89999988886 57889999999999999999998876
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
+.
T Consensus 235 ~~ 236 (265)
T PRK10575 235 LM 236 (265)
T ss_pred hc
Confidence 53
No 137
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=5.5e-43 Score=350.67 Aligned_cols=222 Identities=21% Similarity=0.298 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEeccc----cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 010314 105 SVVWKDLTVTIKGKR----RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (513)
.++++||+++|..+. ...+.+|+|+||++++||+++|+|||||||||||++|+|+++|++ |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~ 80 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GELLIDDHPLHFG 80 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCC
Confidence 589999999995211 012469999999999999999999999999999999999999875 999999987532
Q ss_pred ----CCceEEEEcCCcc--cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHH
Q 010314 180 ----PYGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGq 252 (513)
..+.++|++|++. +++.+||.+++.+...........+..+.+.++++.++|. +..++. +..|||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~LS~G~ 154 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYY------PHMLAPGQ 154 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcC------chhcCHHH
Confidence 1246999999974 6778899999987654332111123345688999999994 566654 45999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||+++|+. +++..+||++++|++|++++.|+
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999864 89999988887 57888999999999999999998
Q ss_pred hHHHH
Q 010314 332 TLACL 336 (513)
Q Consensus 332 ~~~~~ 336 (513)
++++.
T Consensus 234 ~~~~~ 238 (267)
T PRK15112 234 TADVL 238 (267)
T ss_pred HHHHh
Confidence 87654
No 138
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-43 Score=351.23 Aligned_cols=218 Identities=26% Similarity=0.352 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++|+++.|.+ .+.+|+||||++.+||+++|+|+||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 3 ~l~~~~l~~~~~~----~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 75 (277)
T PRK13652 3 LIETRDLCYSYSG----SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTS---GSVLIRGEPITKENIRE 75 (277)
T ss_pred eEEEEEEEEEeCC----CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHHH
Confidence 4789999999842 2359999999999999999999999999999999999999875 9999999875321
Q ss_pred -CceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 -YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 -~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.+.++|++|++. .+...||.||+.+...... .......++++++++.++|.+..++.+ +.|||||||||+|
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Gq~qrl~l 148 (277)
T PRK13652 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG-LDEETVAHRVSSALHMLGLEELRDRVP------HHLSGGEKKRVAI 148 (277)
T ss_pred HHhheEEEecCcccccccccHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHCCChhHhcCCc------ccCCHHHHHHHHH
Confidence 246899999963 2335799999987653221 111233456889999999988877754 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||||+.+|+||||||||+|||+.++..++++|++++++ |.|||+++|++ +++.++||++++|++|++++.|+++++..
T Consensus 149 araL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 149 AGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999999999999999999999999999875 89999988887 57889999999999999999999988753
No 139
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-43 Score=350.66 Aligned_cols=218 Identities=22% Similarity=0.330 Sum_probs=185.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..+.++||++.|. .+.+|+|+||++.+||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 6 ~~l~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 6 ARLRGEQLTLGYG-----KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAH---GHVWLDGEHIQHYASK 77 (265)
T ss_pred cEEEEEEEEEEEC-----CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---cEEEECCEEhhhCCHH
Confidence 4789999999994 3469999999999999999999999999999999999998875 9999999864321
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcC---CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL---PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++.+||+||+.+...... ........+.+.++++.++|.+..++.+ ..||||||||
T Consensus 78 ~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Gq~qr 151 (265)
T PRK10253 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV------DTLSGGQRQR 151 (265)
T ss_pred HHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc------ccCChHHHHH
Confidence 2468999999999989999999976421110 0011223456889999999988777754 5999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++ .++.++||++++|++|++++.|++.+
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999864 89999988887 57899999999999999999999877
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
+.
T Consensus 231 ~~ 232 (265)
T PRK10253 231 IV 232 (265)
T ss_pred Hh
Confidence 54
No 140
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-43 Score=345.65 Aligned_cols=223 Identities=25% Similarity=0.295 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~--- 179 (513)
.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|. ...+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 77 (250)
T PRK14247 3 KIEIRDLKVSFG-----QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77 (250)
T ss_pred eEEEEeeEEEEC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH
Confidence 589999999984 246999999999999999999999999999999999998742 0135999999987532
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcC-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|++.+++.+||.||+.+...... .....+..+.+.++++.++|.+...... +..+.+|||||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgG~~qrv 155 (250)
T PRK14247 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRL--DAPAGKLSGGQQQRL 155 (250)
T ss_pred HHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhh--cCCcccCCHHHHHHH
Confidence 12469999999988889999999987643221 1111233456889999999864211111 224569999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+|||||+.+|+||||||||+|||+.++..+.+.|+++.+ |+|+|+++|++ .++.++||++++|++|++++.|+++++.
T Consensus 156 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 156 CIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999864 78999988886 4788899999999999999999987764
No 141
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-43 Score=342.79 Aligned_cols=213 Identities=24% Similarity=0.314 Sum_probs=182.0
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
++++||++.|.+ + ..|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+... ..+
T Consensus 2 l~~~~l~~~~~~-----~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 2 LKLTDITWLYHH-----L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS---GSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred eEEEEEEEEECC-----c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCeecCcCChhhc
Confidence 689999999842 1 238999999999999999999999999999999999875 999999987532 124
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+|+.||+.+....... ......+++.++++.+||.+..++.+ ..|||||||||+|||||
T Consensus 72 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral 144 (232)
T PRK10771 72 PVSMLFQENNLFSHLTVAQNIGLGLNPGLK-LNAAQREKLHAIARQMGIEDLLARLP------GQLSGGQRQRVALARCL 144 (232)
T ss_pred cEEEEecccccccCCcHHHHHhcccccccC-CCHHHHHHHHHHHHHcCcHHHHhCCc------ccCCHHHHHHHHHHHHH
Confidence 699999999999999999999765321111 11233456889999999998887755 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+.+|++|||||||+|||+.++..+.++|+++.++ |+|||+++|++ .++.++||++++|++|++++.|+.+++.
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999764 89999988887 5788999999999999999999887654
No 142
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-43 Score=345.19 Aligned_cols=212 Identities=25% Similarity=0.411 Sum_probs=182.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
+.++++|+++.|. .+.+|+|+||++.+|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 2 ~~l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~ 73 (241)
T PRK14250 2 NEIEFKEVSYSSF-----GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTE---GSILIDGVDIKTIDVI 73 (241)
T ss_pred ceEEEEeEEEEeC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEhhhcChH
Confidence 3589999999984 3469999999999999999999999999999999999998875 999999986421
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++ .||+||+.+..... . ....++.++++.++|. +..++. +..|||||||||+
T Consensus 74 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~---~~~~~~~~~l~~~~l~~~~~~~~------~~~LS~G~~qrl~ 141 (241)
T PRK14250 74 DLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK--G---EKNVDVEYYLSIVGLNKEYATRD------VKNLSGGEAQRVS 141 (241)
T ss_pred HhhhcEEEEecCchhch-hhHHHHHhcchhhc--C---cHHHHHHHHHHHcCCCHHHhhCC------cccCCHHHHHHHH
Confidence 1346999999998887 69999997643221 1 1234678899999996 566664 4599999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|+. .++.++||++++|++|+++..|++.++.
T Consensus 142 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 142 IARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999864 89999988887 5788899999999999999999987754
No 143
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1e-42 Score=340.36 Aligned_cols=211 Identities=28% Similarity=0.287 Sum_probs=178.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++.|.+.. ....+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 6 ~l~~~~l~~~~~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 6 IVEVHHLKKSVGQGE-HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSS---GEVSLVGQPLHQMDEEA 81 (228)
T ss_pred eEEEeeeEEEccCCC-cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---eeEEECCEEcccCCHHH
Confidence 689999999985311 01359999999999999999999999999999999999998875 9999999875321
Q ss_pred -----CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++.+||.||+.+....... ...+..+++.++++.++|.+..++.+ ..||||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~Ge~qr 154 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGE-SSRQSRNGAKALLEQLGLGKRLDHLP------AQLSGGEQQR 154 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCHhHhhCCh------hhCCHHHHHH
Confidence 24699999999999999999999876433211 11234567889999999988777754 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
|+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||+++|+.. .+ ..||++++|++|++++
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999764 899999888874 55 4599999999999875
No 144
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=344.48 Aligned_cols=223 Identities=22% Similarity=0.312 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (513)
.++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|.++..
T Consensus 4 ~l~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 4 KVKLEQLNVHFG-----KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred EEEEEEEEEEeC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 589999999984 3469999999999999999999999999999999999986 321135999999987531
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|++.+++.+|+.||+.+...........+..+++.++++.+++........ ...+..||||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~qr 156 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRL--KSNAMELSGGQQQR 156 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHh--hCCcCcCCHHHHHH
Confidence 134699999999999999999999765432211111223456788999999864221111 12456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++ .++.++||++++|++|+++..|+++++
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKKI 234 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999975 58999988886 578899999999999999999998775
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
.
T Consensus 235 ~ 235 (252)
T PRK14256 235 F 235 (252)
T ss_pred H
Confidence 4
No 145
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=6.8e-43 Score=347.72 Aligned_cols=215 Identities=29% Similarity=0.420 Sum_probs=183.4
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
+.++|+++.|. .+.+|+|+||.+++||+++|+|+||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 2 l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 73 (256)
T TIGR03873 2 LRLSRVSWSAG-----GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDA---GTVDLAGVDLHGLSRRAR 73 (256)
T ss_pred ceEEeEEEEEC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---CEEEECCEEcccCCHHHH
Confidence 67899999984 3469999999999999999999999999999999999999875 9999999875321
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHh--cC-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALL--QL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~--~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.+.++|++|++.+++.+||.||+.+.... .. .....+..+++.++++.+++.+..++.+ ..|||||||||+
T Consensus 74 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~ 147 (256)
T TIGR03873 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM------STLSGGERQRVH 147 (256)
T ss_pred hhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc------ccCCHHHHHHHH
Confidence 23589999998888889999999774211 00 0011123456889999999988777754 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++ ..+.++||++++|++|++++.|+.+++
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 99999999999999999999999999999999999987789999988887 578899999999999999999988765
No 146
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=346.45 Aligned_cols=219 Identities=22% Similarity=0.279 Sum_probs=181.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++ |....+|+|.++|.+...
T Consensus 12 ~~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~ 86 (260)
T PRK10744 12 SKIQVRNLNFYYG-----KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK 86 (260)
T ss_pred ceEEEEEEEEEeC-----CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence 4689999999984 2469999999999999999999999999999999999986 211135999999987521
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh----HHhhhhcCCCCCCCCCH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD----YANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~vg~~~~~~~LSG 250 (513)
..+.++|++|++.+++ .||+||+.+...........+..++++++++.+++.+ ..++ .+..|||
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LS~ 159 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQ------SGYSLSG 159 (260)
T ss_pred cchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhc------CCCCCCH
Confidence 1346999999998887 7999999876432211111233456889999999843 3343 4569999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||||+|||||+.+|+||||||||+|||+.++..+++.|++++ ++.|||+++|++ ..+..+||++++|++|+++..|
T Consensus 160 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 237 (260)
T PRK10744 160 GQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFG 237 (260)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999996 478999988886 5788899999999999999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
+++++.
T Consensus 238 ~~~~~~ 243 (260)
T PRK10744 238 NTDTIF 243 (260)
T ss_pred CHHHHH
Confidence 987764
No 147
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=9.4e-43 Score=337.37 Aligned_cols=208 Identities=26% Similarity=0.372 Sum_probs=177.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
++++||++.|. .+++|+|+++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+... ..+
T Consensus 1 ~~~~~l~~~~~-------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 70 (213)
T TIGR01277 1 LALDKVRYEYE-------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPAS---GSIKVNDQSHTGLAPYQR 70 (213)
T ss_pred CeEEeeeEEeC-------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEcccCChhcc
Confidence 46899999884 24689999999999999999999999999999999999875 999999987532 235
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+|+.||+.+......... ...+.++.++++.++|.+..++.+ +.|||||||||+|||||
T Consensus 71 ~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~laral 143 (213)
T TIGR01277 71 PVSMLFQENNLFAHLTVRQNIGLGLHPGLKLN-AEQQEKVVDAAQQVGIADYLDRLP------EQLSGGQRQRVALARCL 143 (213)
T ss_pred ceEEEeccCccCCCCcHHHHHHhHhhccCCcc-HHHHHHHHHHHHHcCcHHHhhCCc------ccCCHHHHHHHHHHHHH
Confidence 69999999999999999999976532211111 123456788999999988877754 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
+.+|+||||||||+|||+.++..+.++|+++.++ |.|||+++|+. .++.++||++++|++|++++.|+
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999864 89999988886 57788999999999999998875
No 148
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-43 Score=353.08 Aligned_cols=220 Identities=18% Similarity=0.275 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||++.|.++......+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET---GQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEcccccccc
Confidence 589999999995321112359999999999999999999999999999999999999875 999999976421
Q ss_pred -----CCceEEEEcCCcc--cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHH
Q 010314 180 -----PYGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGG 251 (513)
.++.++|++|++. +++ .||+||+.+..... .....+..+.+.++++.++|. +..++.+ ..||||
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~~~~~~~------~~LS~G 154 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL-GENKQEAYKKVPELLKLVQLPEDYVKRSP------FELSGG 154 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhHhcCCh------hhCCHH
Confidence 1246899999963 444 59999998764322 111123345678899999994 6766644 499999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||+++|+. +++.++||++++|++|++++.|
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999764 89999988886 5788999999999999999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
+++++.
T Consensus 234 ~~~~~~ 239 (289)
T PRK13645 234 SPFEIF 239 (289)
T ss_pred CHHHHh
Confidence 987764
No 149
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=345.97 Aligned_cols=219 Identities=23% Similarity=0.321 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (513)
.++++|+++.|. .+.+|+|+||.+++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 4 ~l~i~~v~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~ 78 (258)
T PRK14241 4 RIDVKDLNIYYG-----SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV 78 (258)
T ss_pred cEEEeeEEEEEC-----CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence 589999999984 2469999999999999999999999999999999999986410 125999999986521
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh----HHhhhhcCCCCCCCCCHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD----YANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~vg~~~~~~~LSGG 251 (513)
..+.++|++|++.+++.+||+||+.+.............++.++++++.++|.+ ..++ .+.+||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LS~G 152 (258)
T PRK14241 79 DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDK------PGGGLSGG 152 (258)
T ss_pred ChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhC------CcccCCHH
Confidence 124699999999999999999999876543211111233456788999999842 3333 45699999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe------CCe
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS------NGN 325 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~------~G~ 325 (513)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|+. .++.++||++++|+ +|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCce
Confidence 99999999999999999999999999999999999999999964 68999988886 57889999999997 799
Q ss_pred EEEEeChHHHH
Q 010314 326 TLFFGETLACL 336 (513)
Q Consensus 326 iv~~G~~~~~~ 336 (513)
+++.|+++++.
T Consensus 231 i~~~~~~~~~~ 241 (258)
T PRK14241 231 LVEIDDTEKIF 241 (258)
T ss_pred EEecCCHHHHH
Confidence 99999987764
No 150
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=346.06 Aligned_cols=223 Identities=20% Similarity=0.273 Sum_probs=181.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|.+...
T Consensus 11 ~~l~i~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 11 EVYQINGMNLWYG-----QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred ceEEEeeEEEEEC-----CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 4689999999984 3469999999999999999999999999999999999986 321125999999987531
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
..+.++|++|++.+++. ||+||+.+...........+..++++++++.+++.+...... +..+.+|||||||
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l--~~~~~~LS~Gq~q 162 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRL--HTQALSLSGGQQQ 162 (259)
T ss_pred cCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhh--hCCcccCCHHHHH
Confidence 12469999999988875 999999876433211111233456788899999854211111 1245699999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
||+|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ ++|+|+++|+. ..+.++||++++|++|+++..|++++
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999965 78999988887 57889999999999999999999887
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
+.
T Consensus 241 ~~ 242 (259)
T PRK14274 241 MF 242 (259)
T ss_pred Hh
Confidence 64
No 151
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-42 Score=346.68 Aligned_cols=218 Identities=20% Similarity=0.267 Sum_probs=184.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|+++.|.+. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 6 ~~l~i~~l~~~~~~~---~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~~~~~~~~ 79 (269)
T PRK13648 6 SIIVFKNVSFQYQSD---ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKS---GEIFYNNQAITDDNFE 79 (269)
T ss_pred ceEEEEEEEEEcCCC---CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEECCcCCHH
Confidence 368999999998531 2359999999999999999999999999999999999999875 9999999875321
Q ss_pred --CceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 181 --YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 181 --~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.+.++|++|++. +++..|+.+|+.+....... ......+.+.++++.+++.+..++. +..|||||||||+
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~------~~~LS~G~~qrl~ 152 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAV-PYDEMHRRVSEALKQVDMLERADYE------PNALSGGQKQRVA 152 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCC-CHHHHHHHHHHHHHHcCCchhhhCC------cccCCHHHHHHHH
Confidence 246899999974 67778999999876432211 1123345678899999998877764 4599999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|++. ++.. ||++++|++|++++.|+++++.
T Consensus 153 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~ 230 (269)
T PRK13648 153 IAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEIF 230 (269)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999764 899999999874 5664 9999999999999999988764
No 152
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-43 Score=362.16 Aligned_cols=207 Identities=23% Similarity=0.355 Sum_probs=180.7
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
|.+ ||+++|.+ + .+ |+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|++...
T Consensus 2 l~~-~l~k~~~~-----~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~---G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 2 LEL-NFKQQLGD-----L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQK---GRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred eEE-EEEEEeCC-----E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccccccc
Confidence 556 88888842 2 23 8999999999999999999999999999999999875 999999986421
Q ss_pred ---CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|+..+|+.+||+||+.++.. ....++++++++.++|.+..++.+ ++|||||||||
T Consensus 71 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qRv 137 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA-------KSMVAQFDKIVALLGIEPLLDRYP------GSLSGGEKQRV 137 (352)
T ss_pred cchhhCCEEEEcCCcccCCCCcHHHHHHhhhh-------hhhHHHHHHHHHHcCCchhhhCCc------ccCCHHHHHHH
Confidence 13579999999999999999999987532 123456889999999998887754 59999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|+|+++|+. .++..+||++++|++|+++..|+++++
T Consensus 138 alaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i 216 (352)
T PRK11144 138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEV 216 (352)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999865 89999988886 588999999999999999999999887
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
..
T Consensus 217 ~~ 218 (352)
T PRK11144 217 WA 218 (352)
T ss_pred Hh
Confidence 54
No 153
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=348.23 Aligned_cols=218 Identities=21% Similarity=0.295 Sum_probs=184.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..+.++|+++.|.+ ..+.+|+|+||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 6 ~~l~~~nl~~~~~~---~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~i~~~~~~ 79 (271)
T PRK13632 6 VMIKVENVSFSYPN---SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS---GEIKIDGITISKENLK 79 (271)
T ss_pred eEEEEEeEEEEcCC---CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEecCcCCHH
Confidence 46899999999842 13469999999999999999999999999999999999999875 999999987532
Q ss_pred -CCceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 -PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 -~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.++.++|++|++. .++.+||+||+.+....... ...+....+.++++.++|.+..++.+ ..||||||||++
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~ 152 (271)
T PRK13632 80 EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKV-PPKKMKDIIDDLAKKVGMEDYLDKEP------QNLSGGQKQRVA 152 (271)
T ss_pred HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCC-CHHHHHHHHHHHHHHcCCHHHhhCCc------ccCCHHHHHHHH
Confidence 1346899999974 56778999999876432211 11233456889999999998887754 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..++++|++++++ ++|||+++|++. ++. .||++++|++|+++..|+++++.
T Consensus 153 laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 153 IASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EAI-LADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HHh-hCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999866 589999999874 554 79999999999999999887654
No 154
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-42 Score=340.40 Aligned_cols=215 Identities=28% Similarity=0.379 Sum_probs=185.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
+.++|+++.|. .+.+++|+|+++++|++++|+|+||||||||+++|+|+++|.. |+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~-----~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03300 1 IELENVSKFYG-----GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTS---GEILLDGKDITNLPPHKR 72 (232)
T ss_pred CEEEeEEEEeC-----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCChhhc
Confidence 46899999984 3469999999999999999999999999999999999999875 999999987532 235
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+|+.||+.+........ .....+.+.++++.++|.+..++.+ ..|||||||||+|||||
T Consensus 73 ~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qrl~laral 145 (232)
T cd03300 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKLP-KAEIKERVAEALDLVQLEGYANRKP------SQLSGGQQQRVAIARAL 145 (232)
T ss_pred ceEEEecccccCCCCcHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCchhhcCCh------hhCCHHHHHHHHHHHHH
Confidence 6999999999998999999998765433211 1233456788999999988887754 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+..+..
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999999999999999865 89999988887 5788999999999999999999876653
No 155
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-42 Score=350.14 Aligned_cols=222 Identities=20% Similarity=0.276 Sum_probs=186.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|+++.|.+. .+.+|++|||++.+||+++|+||||||||||+++|+|+++|+...+|+|.++|.+....
T Consensus 4 ~~l~i~~l~~~~~~~---~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~ 80 (282)
T PRK13640 4 NIVEFKHVSFTYPDS---KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVW 80 (282)
T ss_pred ceEEEEEEEEEcCCC---CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHH
Confidence 468999999998531 23599999999999999999999999999999999999988632348999999875321
Q ss_pred --CceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 181 --YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 181 --~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.+.++|++|++. +++..||.||+.+...... ....+..+++.++++.++|.+..++. ++.|||||||||+
T Consensus 81 ~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~------~~~LS~G~~qrv~ 153 (282)
T PRK13640 81 DIREKVGIVFQNPDNQFVGATVGDDVAFGLENRA-VPRPEMIKIVRDVLADVGMLDYIDSE------PANLSGGQKQRVA 153 (282)
T ss_pred HHHhheEEEEECHHHhhccCCHHHHHHhhHHhCC-CCHHHHHHHHHHHHHHCCChhHhcCC------cccCCHHHHHHHH
Confidence 246899999974 5677899999987543221 11123456788999999999887774 4599999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|+.. .+ ..||++++|++|++++.|+++++.
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999865 899999999874 55 579999999999999999988765
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 232 ~ 232 (282)
T PRK13640 232 S 232 (282)
T ss_pred c
Confidence 3
No 156
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-42 Score=343.09 Aligned_cols=222 Identities=19% Similarity=0.265 Sum_probs=180.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC---CCCCCCceeEEEECCEeCCC-
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR---LPHSARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~---~~~~~~~~G~I~i~G~~~~~- 179 (513)
+.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+ .++. ..+|+|.++|.+...
T Consensus 2 ~~l~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVNFWYG-----DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEEEEEC-----CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccc
Confidence 3689999999984 34699999999999999999999999999999999997 3442 125999999987532
Q ss_pred ------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHH
Q 010314 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqr 253 (513)
..+.++|++|++.+++ .|+.||+.+....+.........+.++++++.++|.+...... +..+..||||||
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~ 152 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKL--KESAFALSGGQQ 152 (250)
T ss_pred cccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhh--hCCcccCCHHHH
Confidence 1246999999998887 5999999876543211111223456788999999864321111 124569999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+||||||||+|||+.++..+++.|+++. +++|||+++|++ ..+.++||++++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~~~~~ 230 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNM-QQAARVSDKTAFFYMGEMVEYDDTK 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999995 478999988887 4788999999999999999999988
Q ss_pred HHH
Q 010314 334 ACL 336 (513)
Q Consensus 334 ~~~ 336 (513)
++.
T Consensus 231 ~~~ 233 (250)
T PRK14245 231 KIF 233 (250)
T ss_pred HHh
Confidence 764
No 157
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-42 Score=342.92 Aligned_cols=222 Identities=26% Similarity=0.327 Sum_probs=180.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (513)
.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+.+ |+...+|+|.++|.+...
T Consensus 5 ~l~~~~l~~~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 5 ILQVSDLSVYYN-----KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred eEEEEeeEEEEC-----CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 589999999984 3469999999999999999999999999999999999853 531125999999987521
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|++.+++ +||.||+.+..............+.+.++++.+++.+...... +..+..||||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~qr 156 (252)
T PRK14239 80 DTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRL--HDSALGLSGGQQQR 156 (252)
T ss_pred chHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHH--hcCcccCCHHHHHH
Confidence 1346999999998887 7999999876433211111223456788899998853211111 22456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|+||||||||+|||+.++..+.++|+++.+ ++|||+++|+. +++..+||++++|++|++++.|+..++
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 157 VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999965 68999988886 578899999999999999999998876
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
.
T Consensus 235 ~ 235 (252)
T PRK14239 235 F 235 (252)
T ss_pred H
Confidence 4
No 158
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.9e-42 Score=340.77 Aligned_cols=215 Identities=28% Similarity=0.406 Sum_probs=185.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
++++|+++.|. .+.+|+|+|+++.+||+++|+||||||||||+++|+|+++|.. |+|.++|.+... ..+
T Consensus 1 i~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~i~g~~~~~~~~~~~ 72 (237)
T TIGR00968 1 IEIANISKRFG-----SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDS---GRIRLNGQDATRVHARDR 72 (237)
T ss_pred CEEEEEEEEEC-----CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEECCEEcCcCChhhc
Confidence 46899999984 3469999999999999999999999999999999999998875 999999987532 135
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+|+.||+.+........ .....+.+.++++.+++.+..++.+ ..|||||+||++|||+|
T Consensus 73 ~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qrl~laral 145 (237)
T TIGR00968 73 KIGFVFQHYALFKHLTVRDNIAFGLEIRKHP-KAKIKARVEELLELVQLEGLGDRYP------NQLSGGQRQRVALARAL 145 (237)
T ss_pred CEEEEecChhhccCCcHHHHHHhHHHhcCCC-HHHHHHHHHHHHHHcCCHhHhhCCh------hhCCHHHHHHHHHHHHH
Confidence 6999999999999999999998765432111 1223456789999999988877755 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+.+|+++||||||+|||+.++..+++.|++++++ |+|||+++|++ .++.++||++++|++|++++.|+.+++.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999875 89999988887 5788999999999999999999987654
No 159
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1e-42 Score=362.06 Aligned_cols=208 Identities=27% Similarity=0.390 Sum_probs=179.9
Q ss_pred eEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---------C
Q 010314 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---------P 180 (513)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---------~ 180 (513)
||++.|.+ + .+ |+||.+++||+++|+|||||||||||++|+|+++|++ |+|.++|++... .
T Consensus 4 ~l~~~~~~-----~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~---G~I~~~g~~i~~~~~~~~~~~~ 73 (354)
T TIGR02142 4 RFSKRLGD-----F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDE---GEIVLNGRTLFDSRKGIFLPPE 73 (354)
T ss_pred EEEEEECC-----E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECccCccccccchh
Confidence 78888732 2 34 9999999999999999999999999999999999875 999999987421 1
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.++|++|++.+|+.+||+||+.++.... . ..+..++++++++.++|.+..++.+ .+|||||||||+|||
T Consensus 74 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~--~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGqkqRvalAr 144 (354)
T TIGR02142 74 KRRIGYVFQEARLFPHLSVRGNLRYGMKRA-R--PSERRISFERVIELLGIGHLLGRLP------GRLSGGEKQRVAIGR 144 (354)
T ss_pred hCCeEEEecCCccCCCCcHHHHHHHHhhcc-C--hhHHHHHHHHHHHHcCChhHhcCCh------hhCCHHHHHHHHHHH
Confidence 356999999999999999999998865321 1 1233456889999999998887754 499999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|+. +++..+||++++|++|+++..|+++++..
T Consensus 145 aL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 145 ALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred HHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 999999999999999999999999999999999865 89999988887 57889999999999999999999887653
No 160
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.9e-42 Score=344.93 Aligned_cols=217 Identities=23% Similarity=0.281 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----CCC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEM 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~-----~~~ 179 (513)
.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|.+ ...
T Consensus 6 ~l~~~~l~~~~~-----~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~i~~ 77 (258)
T PRK11701 6 LLSVRGLTKLYG-----PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDA---GEVHYRMRDGQLRDLYA 77 (258)
T ss_pred eEEEeeeEEEcC-----CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCcccccccccc
Confidence 589999999984 2469999999999999999999999999999999999999875 999999976 321
Q ss_pred C---------CceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCC
Q 010314 180 P---------YGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKG 247 (513)
Q Consensus 180 ~---------~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~ 247 (513)
. .+.++|++|++ .+++.+|+.||+.+...........+....+.++++.+++.+ ..++. +..
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~ 151 (258)
T PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDL------PTT 151 (258)
T ss_pred CCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCC------Ccc
Confidence 1 23589999997 467788999999764322111111233456788999999964 56664 459
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||+++|+. ..+..+||++++|++|++
T Consensus 152 LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g~i 230 (258)
T PRK11701 152 FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQGRV 230 (258)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999765 89999988886 578889999999999999
Q ss_pred EEEeChHHHH
Q 010314 327 LFFGETLACL 336 (513)
Q Consensus 327 v~~G~~~~~~ 336 (513)
++.|+++++.
T Consensus 231 ~~~~~~~~~~ 240 (258)
T PRK11701 231 VESGLTDQVL 240 (258)
T ss_pred EEeCCHHHHh
Confidence 9999987754
No 161
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-42 Score=342.31 Aligned_cols=219 Identities=21% Similarity=0.281 Sum_probs=181.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|. ...+|+|.++|.+...
T Consensus 3 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~ 77 (251)
T PRK14270 3 IKMESKNLNLWYG-----EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77 (251)
T ss_pred cEEEEEEeEEEEC-----CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence 3689999999984 246999999999999999999999999999999999998651 0135999999987531
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh----HHhhhhcCCCCCCCCCH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD----YANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~vg~~~~~~~LSG 250 (513)
..+.++|++|++.+++ +|++||+.+...........+..+++.++++.++|.+ ..++ .+..|||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LS~ 150 (251)
T PRK14270 78 VDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK------SALKLSG 150 (251)
T ss_pred ccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhC------CcccCCH
Confidence 1346999999999887 8999999876533211111233456788999998853 3333 4569999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||||+|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ +.|||+++|+. .++.++||++++|++|++++.|
T Consensus 151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999999976 58999988886 5788999999999999999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
+++++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14270 229 KTEKIF 234 (251)
T ss_pred CHHHHh
Confidence 988764
No 162
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-42 Score=346.00 Aligned_cols=223 Identities=20% Similarity=0.285 Sum_probs=182.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (513)
..++++||++.|. .+.+|+|+||.|++|++++|+||||||||||+++|+|+++|. ...+|+|+++|.+...
T Consensus 18 ~~l~~~nl~~~~~-----~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 18 IKMRARDVSVFYG-----EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred ceEEEEeEEEEEC-----CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 4799999999984 346999999999999999999999999999999999998741 0125999999987531
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCC-CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqr 253 (513)
..+.++|++|++.+++. ||.||+.+....+.. ....+..+++.++++.++|.+...... +..+..||||||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgGq~ 169 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRL--HEPGTGLSGGQQ 169 (267)
T ss_pred cchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHh--hCCcccCCHHHH
Confidence 12468999999988875 999999876543211 111223456788999999964221111 124569999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||+++|+. ..+..+||++++|++|+++..|+++
T Consensus 170 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 170 QRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999975 68999988886 5788999999999999999999887
Q ss_pred HHH
Q 010314 334 ACL 336 (513)
Q Consensus 334 ~~~ 336 (513)
++.
T Consensus 248 ~~~ 250 (267)
T PRK14235 248 KMF 250 (267)
T ss_pred HHH
Confidence 754
No 163
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-42 Score=341.78 Aligned_cols=222 Identities=20% Similarity=0.279 Sum_probs=181.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|++++....+|+|.++|++...
T Consensus 2 ~~~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 2 IAKTTNLNLFYG-----KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred ceeeeeeEEEEC-----CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHH
Confidence 578999999994 2469999999999999999999999999999999999975311125999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCC-CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++.+++ .||+||+.+....+.. .......+++.++++.++|.+...... +..+..|||||||||+|
T Consensus 77 ~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 77 LRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKL--KQNALALSGGQQQRLCI 153 (246)
T ss_pred HhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHh--cCCcccCCHHHHHHHHH
Confidence 1346999999998887 6999999876433211 011223456788999999954322211 22456999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
||||+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||+++|+. .++..+||++++|++|++++.|++.+..
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999864 88999988886 5788999999999999999999987754
No 164
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-42 Score=348.82 Aligned_cols=220 Identities=22% Similarity=0.320 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEecccc-ccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 105 SVVWKDLTVTIKGKRR-YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~-~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
.++++||+++|.+... ..+.+|+|+||+|++||+++|+|+||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~---G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE---GKVYVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEeccccccH
Confidence 5899999999963211 13469999999999999999999999999999999999999875 999999987532
Q ss_pred --CCceEEEEcCCcc--cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 --PYGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 --~~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|++. ++ ..||.+|+.|...... ....+.+++++++++.+||.+..++.+ .+||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LS~G~~qr 152 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLG-IPPEEIRERVDESLKKVGMYEYRRHAP------HLLSGGQKQR 152 (280)
T ss_pred HHHhhheEEEecChhhhhc-cccHHHHHHhhHhhcC-CCHHHHHHHHHHHHHHCCCHhHhhCCc------ccCCHHHHHH
Confidence 1346899999973 44 4699999988654321 111234567899999999998888755 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+|||+|+.+|++|||||||+|||+.++..+++.|++++++ |.|||+++|++. ++.. ||++++|++|++++.|++++
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~ 230 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKE 230 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999764 999999999875 5655 99999999999999999988
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
+..
T Consensus 231 ~~~ 233 (280)
T PRK13633 231 IFK 233 (280)
T ss_pred Hhc
Confidence 754
No 165
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-42 Score=339.31 Aligned_cols=214 Identities=26% Similarity=0.377 Sum_probs=184.3
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
+.++|+++.|. . ++|+|+|+++.+||+++|+|+||||||||+++|+|+++|+. |+|.++|.+... ..+
T Consensus 1 l~~~~l~~~~~-----~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~---G~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 1 LKVENLSKDWK-----E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDS---GKILLNGKDITNLPPEKR 71 (235)
T ss_pred CeeEeEEEEeC-----C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEcCcCChhHc
Confidence 46889999884 2 38999999999999999999999999999999999999875 999999987532 235
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+|+.||+.+...... ....+..+.+.++++.++|.+..++.+ +.|||||||||+|||||
T Consensus 72 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~laral 144 (235)
T cd03299 72 DISYVPQNYALFPHMTVYKNIAYGLKKRK-VDKKEIERKVLEIAEMLGIDHLLNRKP------ETLSGGEQQRVAIARAL 144 (235)
T ss_pred CEEEEeecCccCCCccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhHHhcCc------ccCCHHHHHHHHHHHHH
Confidence 79999999999999999999987643321 111234456788999999988887754 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+.+|++++|||||+|||+.++..+.+.|++++.+ |+|+|+++|++ .++.++||++++|++|++++.|+.++..
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999765 89999999987 5788899999999999999999876653
No 166
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-42 Score=341.20 Aligned_cols=222 Identities=23% Similarity=0.338 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~--~~~~~G~I~i~G~~~~~--- 179 (513)
.++++||++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 77 (250)
T PRK14240 3 KISVKDLDLFYG-----DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI 77 (250)
T ss_pred eEEEEEEEEEEC-----CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 589999999984 24699999999999999999999999999999999998753 11135999999987531
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
.++.++|++|++.+++ +|+.||+.+.............++.+.++++.+++.+...... +..+..||||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~qr 154 (250)
T PRK14240 78 DVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRL--KKSALGLSGGQQQR 154 (250)
T ss_pred chHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHH--hcCCCCCCHHHHHH
Confidence 1346899999998887 8999999876533211111233456788899998753211111 12456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||+++|+. ..+..+||++++|++|+++..|+++++
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999964 78999988886 578899999999999999999988775
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
.
T Consensus 233 ~ 233 (250)
T PRK14240 233 F 233 (250)
T ss_pred H
Confidence 4
No 167
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-42 Score=341.33 Aligned_cols=222 Identities=22% Similarity=0.290 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (513)
.++++||++.|. .+.+|+|+||++.+|++++|+||||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 78 (251)
T PRK14249 4 KIKIRGVNFFYH-----KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78 (251)
T ss_pred eEEEEEEEEEEC-----CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc
Confidence 588999999984 3469999999999999999999999999999999999998751 124999999986421
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|++.+++. |+.||+.+....+.........+.++++++.++|.+...... +..+..||||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~Gq~qr 155 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNL--HKSGLALSGGQQQR 155 (251)
T ss_pred ChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHh--hCCcccCCHHHHHH
Confidence 13569999999998875 999999876543211111123355777888888754222211 23556999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|++|||||||+|||+.++..+.++|+++. ++.|||+++|+. ..+..+||++++|++|++++.|+++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 999999999999999999999999999999999999985 588999999887 578899999999999999999998776
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
.
T Consensus 234 ~ 234 (251)
T PRK14249 234 F 234 (251)
T ss_pred H
Confidence 4
No 168
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-42 Score=344.77 Aligned_cols=219 Identities=22% Similarity=0.297 Sum_probs=179.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+.+ +....+|+|.++|++...
T Consensus 20 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 20 HILEVKDLSIYYG-----EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred ceEEEEEEEEEeC-----CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 3689999999984 3469999999999999999999999999999999999864 210125999999987531
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh----hHHhhhhcCCCCCCCCCH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~vg~~~~~~~LSG 250 (513)
..+.++|++|++.+++. |+.||+.+.............++.+.++++.+++. +..++ .+..|||
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LSg 167 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHS------SALSLSG 167 (268)
T ss_pred ccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhc------CcccCCH
Confidence 13469999999988875 99999987643221111112345577888888884 33444 4459999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||+++|++ .++.++||++++|++|++++.|
T Consensus 168 Gq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~ 245 (268)
T PRK14248 168 GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEYD 245 (268)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999965 68999988886 5788999999999999999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
+++++.
T Consensus 246 ~~~~~~ 251 (268)
T PRK14248 246 QTEQIF 251 (268)
T ss_pred CHHHHH
Confidence 987754
No 169
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-42 Score=340.66 Aligned_cols=222 Identities=21% Similarity=0.330 Sum_probs=180.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~--~~~~~G~I~i~G~~~~~--- 179 (513)
.++++|+++.|. .+.+|+++||++++||+++|+||||||||||+++|+|++++ ....+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~ 77 (250)
T PRK14262 3 IIEIENFSAYYG-----EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77 (250)
T ss_pred eEEEEeeEEEeC-----CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence 589999999984 34699999999999999999999999999999999999874 10125999999986531
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|++.+++ .||+||+.+.............++.++++++.+++.+...... +..+.+||||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~Gq~qr 154 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSEL--NKPGTRLSGGQQQR 154 (250)
T ss_pred hHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHH--hCChhhcCHHHHHH
Confidence 1346999999999887 8999999876432211111223455788899999854221111 22456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
++|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++ +.+..+||++++|++|+++..|+++++
T Consensus 155 ~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 155 LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999975 78999988886 478899999999999999999998776
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
.
T Consensus 233 ~ 233 (250)
T PRK14262 233 V 233 (250)
T ss_pred H
Confidence 4
No 170
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-42 Score=343.44 Aligned_cols=223 Identities=21% Similarity=0.282 Sum_probs=182.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (513)
..++++||++.|. .+.+|+|+||++.+||+++|+||||||||||+++|+|+++|. ...+|+|.++|.+...
T Consensus 19 ~~l~~~nl~~~~~-----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 19 IALSTKDLHVYYG-----KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred eEEEEeeEEEEEC-----CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 4799999999984 346999999999999999999999999999999999998641 0135999999987531
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
..+.++|++|++.+++ .||+||+.++..............++.++++.++|.+...... ...++.|||||||
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~--~~~~~~LS~G~~q 170 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDL--HKSALTLSGGQQQ 170 (267)
T ss_pred CChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhh--cCCcccCCHHHHH
Confidence 1346999999998887 5999999876432211111233456788999999854322221 2356799999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
||+|||||+.+|++|||||||+|||+.++..+.++|+++. ++.|||+++|++ .++.++||++++|++|++++.|++.+
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNM-QQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCH-HHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999996 478999988887 47889999999999999999999877
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
+.
T Consensus 249 ~~ 250 (267)
T PRK14237 249 IF 250 (267)
T ss_pred Hh
Confidence 64
No 171
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-42 Score=333.22 Aligned_cols=195 Identities=31% Similarity=0.539 Sum_probs=166.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----C
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----P 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~ 180 (513)
.+.|+||+|.|+.++ .++.+|+++||.+++||+++|+||||||||||+++|+|+++|....+|+|.++|.+... .
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGR-SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCC-CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence 579999999997643 45679999999999999999999999999999999999998311125999999987532 2
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.++|++|++.+++.+||+||+.+..... .++ .+..||||||||++|||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------------------~~~------~~~~LS~Ge~qrl~lar 131 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------GNE------FVRGISGGERKRVSIAE 131 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc------------------------ccc------chhhCCHHHHHHHHHHH
Confidence 356999999999999999999997643110 222 44589999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||+.+|+||||||||+|||+.++..+++.|++++++ +.|+|+++||..+++.++||++++|++|++++.|
T Consensus 132 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 132 ALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999865 6788887888767889999999999999998764
No 172
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.2e-42 Score=340.73 Aligned_cols=199 Identities=31% Similarity=0.414 Sum_probs=169.7
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHH
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY 205 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~ 205 (513)
|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+........+|++|++.+++.+||.||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS---GGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 578999999999999999999999999999999999875 99999998754322235899999999999999999987
Q ss_pred HHHhcCCC-chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 010314 206 SALLQLPG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSAL 284 (513)
Q Consensus 206 ~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~ 284 (513)
......+. ...+..+.+.++++.++|.+..++.+ .+|||||||||+|||+|+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh------hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 53211111 11233456789999999988777754 499999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 285 LMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 285 ~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
.+.+.|++++++ |+|||+++|++ .++.++||++++|++|+++..|+..+
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCcee
Confidence 999999999764 89999988886 57889999999999999998886543
No 173
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-42 Score=340.41 Aligned_cols=219 Identities=22% Similarity=0.280 Sum_probs=180.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (513)
.+.++|+++.|. .+.+|+|+||.+++||+++|+||||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T PRK14272 4 LLSAQDVNIYYG-----DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV 78 (252)
T ss_pred EEEEeeeEEEEC-----CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc
Confidence 588999999984 3469999999999999999999999999999999999987631 125999999987531
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh----HHhhhhcCCCCCCCCCHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD----YANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~vg~~~~~~~LSGG 251 (513)
..+.++|++|++.+++.+|+.||+.+...........+..+.+.++++.+++.. ..++ .++.||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~------~~~~LS~G 152 (252)
T PRK14272 79 DPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKT------PATGLSGG 152 (252)
T ss_pred CHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcC------CcccCCHH
Confidence 124699999999999999999999875432211111223445667777777642 3333 45699999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|+. ..+..+||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14272 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEHGP 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999964 68999988887 57888999999999999999999
Q ss_pred hHHHH
Q 010314 332 TLACL 336 (513)
Q Consensus 332 ~~~~~ 336 (513)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14272 231 TDQLF 235 (252)
T ss_pred HHHHH
Confidence 87764
No 174
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-43 Score=326.82 Aligned_cols=217 Identities=26% Similarity=0.353 Sum_probs=186.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
|+.+||+++.. ++.+|++||++++|||++||+||||||||||||+|+|.+.|++ |++.++|.+...+
T Consensus 2 i~a~nls~~~~-----Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~---G~v~~~g~~l~~~~~~~l 73 (259)
T COG4559 2 IRAENLSYSLA-----GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS---GEVTLNGVPLNSWPPEEL 73 (259)
T ss_pred eeeeeeEEEee-----cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCC---CeEeeCCcChhhCCHHHH
Confidence 68899999984 5679999999999999999999999999999999999999885 9999999875433
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcC-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.+..+.++|+..+-...||.|.+.++..-.. +....+..+.++++|...++.+++.+.. ..|||||||||.+|
T Consensus 74 A~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y------~~LSGGEqQRVqlA 147 (259)
T COG4559 74 ARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY------RTLSGGEQQRVQLA 147 (259)
T ss_pred HHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch------hhcCchHHHHHHHH
Confidence 2456889999888667899999988753221 1211244456889999999999988754 39999999999999
Q ss_pred HHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 260 RELVM------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 260 raL~~------~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|.|+. ++++||||||||+||...+..++++.++++++|..|+++.|+. ..+..+||||++|++||++..|++.
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDL-NLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDL-NLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccc-hHHHHhhheeeeeeCCeEeecCCHH
Confidence 99986 4569999999999999999999999999999999999988886 5788999999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 227 ~vlt 230 (259)
T COG4559 227 DVLT 230 (259)
T ss_pred HhcC
Confidence 8763
No 175
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-42 Score=340.24 Aligned_cols=221 Identities=21% Similarity=0.269 Sum_probs=179.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (513)
.++++|+++.|. .+.+|+|+||.+++||+++|+||||||||||+++|+|++++.. ..+|+|.++|.+...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~ 77 (249)
T PRK14253 3 KFNIENLDLFYG-----ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID 77 (249)
T ss_pred eEEEeccEEEEC-----CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence 578999999984 3469999999999999999999999999999999999988630 125999999986521
Q ss_pred ---CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|++.+++ .||.||+.+..............+++.++++.+++.+...... +..+.+|||||||||
T Consensus 78 ~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~LS~G~~qrv 154 (249)
T PRK14253 78 VADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRL--KSHAFGLSGGQQQRL 154 (249)
T ss_pred hHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHh--hcCcccCCHHHHHHH
Confidence 1246999999999887 8999999876432211111223456778888888853221111 224569999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
+|||||+.+|+||||||||+|||+.++..++++|+++++ +.|||+++|++ .++..+||++++|++|++++.|+++++
T Consensus 155 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 155 CIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999975 58999988887 578999999999999999999987765
No 176
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.6e-42 Score=339.72 Aligned_cols=198 Identities=26% Similarity=0.351 Sum_probs=169.2
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CCceEEEEc-CCcccCCC
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVE-RETTLIGS 196 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~-Q~~~l~~~ 196 (513)
.+.+|+|+||++++||+++|+|+||||||||+++|+|+++|+. |+|.++|.+... ..+.++|++ |.+.+++.
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTS---GEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---eEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 4579999999999999999999999999999999999999875 999999976421 134689997 55778889
Q ss_pred CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010314 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (513)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs 276 (513)
+||+||+.+........ ..+..+.+.++++.++|.+..++.+. .||||||||++||+||+.+|+||||||||+
T Consensus 110 ~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~------~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 110 LPVIDSFYLLAAIYDLP-PARFKKRLDELSELLDLEELLDTPVR------QLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred CcHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHcCChhHhcCChh------hCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99999998765432111 12334567889999999888877554 999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 277 HLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|||+.++..+.+.|++++++ ++|||+++|++ +++..+||++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999765 88999988887 5788999999999999998764
No 177
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-42 Score=334.05 Aligned_cols=200 Identities=27% Similarity=0.394 Sum_probs=171.5
Q ss_pred eEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---------C
Q 010314 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---------P 180 (513)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---------~ 180 (513)
||+++|.+ +.+ |+||++++ |+++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 5 ~l~~~~~~-----~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~~~ 73 (214)
T cd03297 5 DIEKRLPD-----FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDG---GTIVLNGTVLFDSRKKINLPPQ 73 (214)
T ss_pred eeeEecCC-----eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEecccccchhhhhhH
Confidence 88888842 334 99999999 9999999999999999999999999875 999999976421 1
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.++|++|++.+++.+|+.||+.+..... .....++++.++++.+++.+..++.+ ..|||||||||+|||
T Consensus 74 ~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~ 144 (214)
T cd03297 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRK---RNREDRISVDELLDLLGLDHLLNRYP------AQLSGGEKQRVALAR 144 (214)
T ss_pred hhcEEEEecCCccCCCCCHHHHHHHHHhhC---CHHHHHHHHHHHHHHcCCHhHhhcCc------ccCCHHHHHHHHHHH
Confidence 246999999999999999999998764321 11223456889999999988777654 499999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||+.+|+||||||||+|||+.++..+.++|++++++ |+|||+++|+. .++..+||++++|++|++++.|
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999865 89999988886 5788899999999999998765
No 178
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-42 Score=345.50 Aligned_cols=218 Identities=20% Similarity=0.228 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||++.|.+. ....+|+|+||++.+||+++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~~~--~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~i~~~~~~~ 78 (277)
T PRK13642 4 ILEVENLVFKYEKE--SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFE---GKVKIDGELLTAENVWN 78 (277)
T ss_pred eEEEEEEEEEcCCC--CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CEEEECCEECCcCCHHH
Confidence 58999999999532 12359999999999999999999999999999999999999875 999999987532
Q ss_pred CCceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 PYGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 ~~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++. .++..||.||+.+....... ...+..++++++++.++|.+..++.+ ..|||||||||+|
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~l 151 (277)
T PRK13642 79 LRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGI-PREEMIKRVDEALLAVNMLDFKTREP------ARLSGGQKQRVAV 151 (277)
T ss_pred HhcceEEEEECHHHhhccCCHHHHHHhhHHHcCC-CHHHHHHHHHHHHHHCCCHhHhhCCc------ccCCHHHHHHHHH
Confidence 1346999999974 56678999999876432211 11233456889999999988877744 5999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||+++|+.. .+. .||++++|++|+++..|+++++.
T Consensus 152 AraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 152 AGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999875 999999888874 555 69999999999999999988765
No 179
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-42 Score=345.74 Aligned_cols=218 Identities=22% Similarity=0.316 Sum_probs=181.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCCC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVNGAKSEMP 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~-----~~~G~I~i~G~~~~~~ 180 (513)
|+++||++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|+. ..+|+|.++|.+....
T Consensus 2 l~~~nl~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~ 76 (272)
T PRK13547 2 LTADHLHVARR-----HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76 (272)
T ss_pred eEEEEEEEEEC-----CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC
Confidence 78999999984 3469999999999999999999999999999999999998850 0149999999875321
Q ss_pred -----CceEEEEcCCcccCCCCCHHHHHHHHHHhcC---CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHH
Q 010314 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQL---PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGq 252 (513)
.+.++|++|++.+++.+||.||+.+...... .....+..+.+.++++.++|.+..++.+ ..|||||
T Consensus 77 ~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgG~ 150 (272)
T PRK13547 77 DAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV------TTLSGGE 150 (272)
T ss_pred CHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc------ccCCHHH
Confidence 2357999999876667899999977532110 0001223456788999999988776644 5999999
Q ss_pred HHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 253 RRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 253 rqRv~IAraL~---------~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
||||+|||||+ .+|++|||||||+|||+.++..++++|+++.++ |.|||+++|++ .++..+||++++|+
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~ 229 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLA 229 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEE
Confidence 99999999999 599999999999999999999999999999875 89999988886 57888999999999
Q ss_pred CCeEEEEeChHHH
Q 010314 323 NGNTLFFGETLAC 335 (513)
Q Consensus 323 ~G~iv~~G~~~~~ 335 (513)
+|++++.|+++++
T Consensus 230 ~G~i~~~g~~~~~ 242 (272)
T PRK13547 230 DGAIVAHGAPADV 242 (272)
T ss_pred CCeEEEecCHHHH
Confidence 9999999988765
No 180
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=338.13 Aligned_cols=219 Identities=21% Similarity=0.278 Sum_probs=179.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|. .+.+|+|+||++.+||+++|+|+||||||||+++|+|+.+ |+...+|+|.++|.+...
T Consensus 4 ~~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 4 KIITSSDVHLFYG-----KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred ceEEEEeEEEEEC-----CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc
Confidence 3689999999984 2469999999999999999999999999999999999865 421125999999986521
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh----hHHhhhhcCCCCCCCCCH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~vg~~~~~~~LSG 250 (513)
..+.++|++|++.+++ .||.||+.+.............++.+.+.++.+++. +..++ .+.+|||
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~------~~~~LS~ 151 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHE------SALSLSG 151 (252)
T ss_pred ccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhc------CcccCCH
Confidence 1346999999998888 699999987643321111112234567788888774 23333 4569999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||||+|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ +.|||+++|++ ..+.++||+|++|++|+++..|
T Consensus 152 Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14255 152 GQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFA 229 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999976 58999988886 5788999999999999999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
++.+..
T Consensus 230 ~~~~~~ 235 (252)
T PRK14255 230 DTKQMF 235 (252)
T ss_pred CHHHHh
Confidence 887764
No 181
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=342.27 Aligned_cols=223 Identities=22% Similarity=0.294 Sum_probs=181.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|. .+.+|+|+||.+++||+++|+||||||||||+++|+|++++.. ..+|+|.++|.+...
T Consensus 24 ~~l~~~nl~~~~~-----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 24 TALEVRNLNLFYG-----DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred cEEEEEEEEEEEC-----CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 4689999999984 2469999999999999999999999999999999999987410 125999999987531
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
.++.++|++|++.+++. ||+||+.+.............++.++++++.+++.+...... +..+..|||||||
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~Gq~q 175 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRL--HENAFGLSGGQQQ 175 (272)
T ss_pred cCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHh--hCCcccCCHHHHH
Confidence 13569999999988886 999999876433211111223456788899999864211111 2245699999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
||+|||||+.+|+||||||||+|||+.++..+.++|+++++ +.|||+++|++ .++.++||++++|++|++++.|++++
T Consensus 176 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999999976 68999988886 57889999999999999999998876
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
..
T Consensus 254 ~~ 255 (272)
T PRK14236 254 LF 255 (272)
T ss_pred Hh
Confidence 53
No 182
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-42 Score=338.36 Aligned_cols=218 Identities=22% Similarity=0.288 Sum_probs=179.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (513)
.++++|+++.|. .+.+|+++||++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~ 78 (251)
T PRK14251 4 IISAKDVHLSYG-----NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM 78 (251)
T ss_pred eEEEEeeEEEEC-----CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence 589999999984 2469999999999999999999999999999999999986 210125999999987421
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh----hHHhhhhcCCCCCCCCCHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~vg~~~~~~~LSGG 251 (513)
..+.++|++|++.+++ .||+||+.+..............+.+.++++.+++. +..++ .+.+||||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~LS~G 151 (251)
T PRK14251 79 DLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDR------NAQAFSGG 151 (251)
T ss_pred hHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhcc------ChhhCCHH
Confidence 1346999999998886 799999987543221111112335678889999984 23343 45699999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||++|||||+.+|+||||||||+|||+.++..+.+.|+++.+ +.|||+++|++ .++.++||++++|++|+++..|+
T Consensus 152 q~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14251 152 QQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAGP 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 68999988886 57889999999999999999999
Q ss_pred hHHHH
Q 010314 332 TLACL 336 (513)
Q Consensus 332 ~~~~~ 336 (513)
++++.
T Consensus 230 ~~~~~ 234 (251)
T PRK14251 230 TEEMF 234 (251)
T ss_pred HHHHH
Confidence 87754
No 183
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=340.18 Aligned_cols=224 Identities=22% Similarity=0.303 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~--- 179 (513)
.++++|+++.|. ...+|+|+||++++|++++|+|+||||||||+++|+|+++|++ ..+|+|.++|.+...
T Consensus 7 ~l~~~nl~~~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~ 81 (261)
T PRK14258 7 AIKVNNLSFYYD-----TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81 (261)
T ss_pred eEEEeeEEEEeC-----CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc
Confidence 689999999984 2369999999999999999999999999999999999998742 125999999976421
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|++.+++ +|+.||+.+...........+..+.+.++++.+++.+..+... ...+..||||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LSgGq~qr 158 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKI--HKSALDLSGGQQQR 158 (261)
T ss_pred chHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHh--cCCcccCCHHHHHH
Confidence 1346999999998888 8999999876432211111223456788999999854322221 23456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeC-----CeEEEE
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN-----GNTLFF 329 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~-----G~iv~~ 329 (513)
|+|||+|+.+|+||||||||+|||+.++..+.+.|+++++ .|.|||+++|++ .++.++||+|++|++ |++++.
T Consensus 159 v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999999999999999999999999999999999999875 489999988886 578999999999999 999999
Q ss_pred eChHHHHH
Q 010314 330 GETLACLQ 337 (513)
Q Consensus 330 G~~~~~~~ 337 (513)
|+++++..
T Consensus 238 ~~~~~~~~ 245 (261)
T PRK14258 238 GLTKKIFN 245 (261)
T ss_pred CCHHHHHh
Confidence 99988643
No 184
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-42 Score=344.18 Aligned_cols=222 Identities=21% Similarity=0.306 Sum_probs=179.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (513)
..++++||++.|. .+.+|+|+||+|++||+++|+||||||||||+++|+|++++.. ..+|+|.++|.+...
T Consensus 12 ~~l~i~nl~~~~~-----~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 12 IIISLQNVTISYG-----TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred ceEEEEeEEEEEC-----CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 4699999999984 3469999999999999999999999999999999999987310 125999999986421
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
.++.++|++|++.+++. ||+||+.+.+...... ....+.+.++++.+++........ +..+..|||||||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~q 161 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYT--GDMDELVERSLRKAAVWDECKDKL--NESGYSLSGGQQQ 161 (269)
T ss_pred CCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCc--HHHHHHHHHHHHHhCCcchhhhhh--CCCcccCCHHHHH
Confidence 12469999999988884 9999998765432111 123456778888888742111111 2345699999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC-----------
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN----------- 323 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~----------- 323 (513)
||+|||||+.+|+||||||||+|||+.++..++++|+++++ +.|||+++|++ .++..+||++++|++
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCEEEEEecccccccccccc
Confidence 99999999999999999999999999999999999999964 78999988886 578999999999996
Q ss_pred CeEEEEeChHHHHH
Q 010314 324 GNTLFFGETLACLQ 337 (513)
Q Consensus 324 G~iv~~G~~~~~~~ 337 (513)
|++++.|++.++..
T Consensus 240 g~~~~~~~~~~~~~ 253 (269)
T PRK14259 240 GYLVEFNETKKIFN 253 (269)
T ss_pred ceEEEeCCHHHHHh
Confidence 67899999988753
No 185
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-42 Score=341.16 Aligned_cols=222 Identities=22% Similarity=0.291 Sum_probs=181.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC--ceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR--MYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~--~~G~I~i~G~~~~~--- 179 (513)
.++++|+++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++++.. .+|+|.++|++...
T Consensus 7 ~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (259)
T PRK14260 7 AIKVKDLSFYYN-----TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI 81 (259)
T ss_pred eEEEEEEEEEEC-----CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc
Confidence 689999999984 24699999999999999999999999999999999999875311 35999999986521
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
....++|++|++.+++ +||+||+.+....+.........+.+.++++.+++.+...... +.++..||||||||
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~qr 158 (259)
T PRK14260 82 NINRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKL--NKSALGLSGGQQQR 158 (259)
T ss_pred chHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHh--cCCcccCCHHHHHH
Confidence 1246999999999887 8999999876543211111223456788899998843211111 23566999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe-----CCeEEEEe
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-----NGNTLFFG 330 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~-----~G~iv~~G 330 (513)
|+|||||+.+|++|||||||+|||+.++..+++.|+++++ ++|||+++|++ +++.++||++++|+ +|++++.|
T Consensus 159 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 9999999999999999999999999999999999999975 68999988887 58899999999998 59999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
++.++.
T Consensus 237 ~~~~~~ 242 (259)
T PRK14260 237 VTTQIF 242 (259)
T ss_pred CHHHHh
Confidence 998764
No 186
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=337.92 Aligned_cols=222 Identities=20% Similarity=0.271 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~--~~~~~G~I~i~G~~~~~--- 179 (513)
.+.++|+++.|. .+.+|+|+||++++||+++|+||||||||||+++|+|+.++ ....+|+|.++|.+...
T Consensus 6 ~i~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 6 ILSTKNLNLWYG-----EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred eEEEeeeEEEEC-----CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 689999999984 34699999999999999999999999999999999999753 11125999999987532
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|++.+++. ||+||+.+.............+..+.++++.+++.+...... +..+..||||||||
T Consensus 81 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~G~~qr 157 (253)
T PRK14261 81 DVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRL--HDSALSLSGGQQQR 157 (253)
T ss_pred chhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHh--hcChhhCCHHHHHH
Confidence 12468999999988875 999999886543211111233456788889988853211111 22456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
++|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|+. .++.++||++++|++|+++..|+++++
T Consensus 158 v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 158 LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999975 58999988886 578889999999999999999998775
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
.
T Consensus 236 ~ 236 (253)
T PRK14261 236 F 236 (253)
T ss_pred H
Confidence 4
No 187
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-41 Score=344.55 Aligned_cols=220 Identities=23% Similarity=0.296 Sum_probs=179.8
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC-
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~- 179 (513)
...+.++|+++.|. .+.+|+|+||.|++||+++|+||||||||||+++|+|+.+ |....+|+|.++|.+...
T Consensus 37 ~~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~ 111 (286)
T PRK14275 37 KPHVVAKNFSIYYG-----EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111 (286)
T ss_pred ceEEEEeeeEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence 34689999999984 2459999999999999999999999999999999999854 300024999999986421
Q ss_pred ------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh----hHHhhhhcCCCCCCCCC
Q 010314 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~vg~~~~~~~LS 249 (513)
.++.++|++|++.+++. ||.||+.+.............++.+.++++.+++. +..++ .+..||
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~------~~~~LS 184 (286)
T PRK14275 112 FTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDK------NALGLS 184 (286)
T ss_pred ccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhC------ChhhCC
Confidence 13469999999988875 99999988643321111122345677888988874 33444 456999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||+++|+. .++.++||++++|++|+++..
T Consensus 185 gGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~~~ 262 (286)
T PRK14275 185 GGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNM-QQASRVSDYTMFFYEGVLVEH 262 (286)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999875 68999988886 578899999999999999999
Q ss_pred eChHHHH
Q 010314 330 GETLACL 336 (513)
Q Consensus 330 G~~~~~~ 336 (513)
|++.++.
T Consensus 263 g~~~~~~ 269 (286)
T PRK14275 263 APTAQLF 269 (286)
T ss_pred CCHHHHH
Confidence 9987764
No 188
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.7e-43 Score=317.31 Aligned_cols=211 Identities=28% Similarity=0.317 Sum_probs=183.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++++++++... .....||++|++.|++||.+||+|||||||||||-+|+|+..|++ |+|.+.|++...
T Consensus 6 ii~~~~l~ktvg~~-~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ss---GeV~l~G~~L~~ldEd~ 81 (228)
T COG4181 6 IIEVHHLSKTVGQG-EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSS---GEVRLLGQPLHKLDEDA 81 (228)
T ss_pred eeehhhhhhhhcCC-CcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCC---ceEEEcCcchhhcCHHH
Confidence 68889999887543 245679999999999999999999999999999999999999875 999999987421
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
+.+.+|||||...++|+||..||+..++.++.... .+......+.|+.+||.+..+. ||.+|||||+||
T Consensus 82 rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~-~~~~~~A~~lL~~vGLg~Rl~H------yP~qLSGGEQQR 154 (228)
T COG4181 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESS-ADSRAGAKALLEAVGLGKRLTH------YPAQLSGGEQQR 154 (228)
T ss_pred HHHhhccceeEEEEeeeccccchhhhhccchhhhcCCcc-ccHHHHHHHHHHHhCccccccc------CccccCchHHHH
Confidence 23679999999999999999999999887764321 2345567889999999876654 677999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
|+||||++..|+|||.||||-+||..+..+|.++|-.+.. .|.|.|++||++ .+..-|||++-|.+|+++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 9999999999999999999999999999999999999975 599999999987 4677899999999999874
No 189
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=342.07 Aligned_cols=223 Identities=19% Similarity=0.229 Sum_probs=182.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (513)
..+.++||++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++|. ...+|+|.++|.+...
T Consensus 20 ~~l~i~nl~~~~~-----~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 20 PAMAAVNLTLGFA-----GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred cEEEEeeEEEEEC-----CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc
Confidence 4789999999994 346999999999999999999999999999999999998862 0135999999987532
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|++.+++ .||+||+.+...........+....+.++++.++|.+...... ...+..||||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l--~~~~~~LSgGq~qr 171 (276)
T PRK14271 95 DVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRL--SDSPFRLSGGQQQL 171 (276)
T ss_pred hhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHh--hCCcccCCHHHHHH
Confidence 1346899999998887 7999999876432211111233345678899999975332211 12456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||+|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|+. .++.++||++++|++|++++.|+++++
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999976 58999988886 578899999999999999999998876
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
.
T Consensus 250 ~ 250 (276)
T PRK14271 250 F 250 (276)
T ss_pred H
Confidence 4
No 190
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.1e-41 Score=338.29 Aligned_cols=217 Identities=22% Similarity=0.285 Sum_probs=179.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-----CCC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-----SEM 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~-----~~~ 179 (513)
.++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+.+|.. |+|.++|.+ ...
T Consensus 3 ~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (253)
T TIGR02323 3 LLQVSGLSKSYG-----GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH---GTATYIMRSGAELELYQ 74 (253)
T ss_pred eEEEeeeEEEeC-----CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEEeccccccccccc
Confidence 589999999984 2468999999999999999999999999999999999998874 999999865 321
Q ss_pred -C--------CceEEEEcCCcc--cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCC
Q 010314 180 -P--------YGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKG 247 (513)
Q Consensus 180 -~--------~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~ 247 (513)
. .+.++|++|++. +++.+|+.+|+.+................+.++++.+++. ...++.+ ..
T Consensus 75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~------~~ 148 (253)
T TIGR02323 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLP------RA 148 (253)
T ss_pred CCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCc------hh
Confidence 1 135899999974 4566799999865432111111112345678999999996 4666644 59
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|||||||||+|||||+.+|++|||||||+|||+.++..++++|+++.++ |.|||+++|+. ..+..+||++++|++|++
T Consensus 149 LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G~i 227 (253)
T TIGR02323 149 FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQGRV 227 (253)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998754 89999988876 578889999999999999
Q ss_pred EEEeChHHHH
Q 010314 327 LFFGETLACL 336 (513)
Q Consensus 327 v~~G~~~~~~ 336 (513)
++.|+++++.
T Consensus 228 ~~~~~~~~~~ 237 (253)
T TIGR02323 228 VESGLTDQVL 237 (253)
T ss_pred EEECCHHHHh
Confidence 9999887654
No 191
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-42 Score=379.24 Aligned_cols=223 Identities=21% Similarity=0.233 Sum_probs=188.2
Q ss_pred ceEEEEeEEEEEecccc------ccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 010314 104 ASVVWKDLTVTIKGKRR------YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (513)
..|+++||++.|..... ..+.+|+||||.|++||+++|+|+||||||||+++|+|+++|++ |+|.++|.++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~---G~I~~~g~~i 388 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQG---GEIIFNGQRI 388 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---cEEEECCEEC
Confidence 46999999999952110 12469999999999999999999999999999999999999875 9999999865
Q ss_pred CC--------CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCC
Q 010314 178 EM--------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMK 246 (513)
Q Consensus 178 ~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~ 246 (513)
.. .++.++|++|++ .+++.+||.|++.+...........+..+++.++|+.+||. +..++ +++
T Consensus 389 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~------~~~ 462 (623)
T PRK10261 389 DTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWR------YPH 462 (623)
T ss_pred CcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhC------Ccc
Confidence 32 124699999997 58999999999987643321111123446788999999995 56666 455
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
+|||||||||+|||||+.+|+||||||||+|||+.++..|+++|++++++ |.|||+++|+. ..+..+||+|++|++|+
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLGQ 541 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999865 89999988876 58889999999999999
Q ss_pred EEEEeChHHHH
Q 010314 326 TLFFGETLACL 336 (513)
Q Consensus 326 iv~~G~~~~~~ 336 (513)
+++.|++++++
T Consensus 542 iv~~g~~~~i~ 552 (623)
T PRK10261 542 IVEIGPRRAVF 552 (623)
T ss_pred EEEecCHHHHh
Confidence 99999998875
No 192
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-42 Score=338.34 Aligned_cols=222 Identities=19% Similarity=0.290 Sum_probs=179.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (513)
.-+++|+++.|. .+.+|+|+||++.+||+++|+|+||||||||+++|+|+.+ |....+|+|.++|.+...
T Consensus 5 ~~~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 5 HASVKNLNLWYG-----SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEEeeeEEEEEC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 357899999884 3469999999999999999999999999999999999976 210125999999986421
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcC-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
..+.++|++|++.+++. ||.||+.+....+. .......++.+.++++.++|.+...... +..+..|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~~~~LS~Gq~q 156 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRL--KDSAFELSGGQQQ 156 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHh--hcChhhCCHHHHH
Confidence 13468999999988875 99999987643321 1111223456788999999965321111 1245699999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
||+|||||+.+|+||||||||+|||+.++..+.+.|+++. +|+|||+++|+. .++.++||++++|++|++++.|++++
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999986 489999999987 47889999999999999999998876
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
+.
T Consensus 235 ~~ 236 (251)
T PRK14244 235 IF 236 (251)
T ss_pred Hh
Confidence 54
No 193
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-42 Score=319.01 Aligned_cols=216 Identities=28% Similarity=0.379 Sum_probs=191.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.+.+++++.+|.++ ...+|+|||+.+.+||.++++||||||||||||+++|+.+|.. |+|.+||+++..+...-
T Consensus 3 ~l~~~~~sl~y~g~---~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~---G~i~l~~r~i~gPgaer 76 (259)
T COG4525 3 MLNVSHLSLSYEGK---PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR---GSIQLNGRRIEGPGAER 76 (259)
T ss_pred eeehhheEEecCCc---chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCccc---ceEEECCEeccCCCccc
Confidence 46778899999653 2569999999999999999999999999999999999999975 99999999987776667
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~ 264 (513)
|.|+|++.++|.+||.+|+.|+..++.-. ..++.+.+.+.+..+||.+..++ ++.+|||||||||.|||||+.
T Consensus 77 gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~-k~~R~~~a~q~l~~VgL~~~~~~------~i~qLSGGmrQRvGiARALa~ 149 (259)
T COG4525 77 GVVFQNEALLPWLNVIDNVAFGLQLRGIE-KAQRREIAHQMLALVGLEGAEHK------YIWQLSGGMRQRVGIARALAV 149 (259)
T ss_pred eeEeccCccchhhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhCccccccc------ceEeecchHHHHHHHHHHhhc
Confidence 99999999999999999999998876433 24677789999999999988776 455999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEe--CCeEEEEeChHH
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS--NGNTLFFGETLA 334 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~--~G~iv~~G~~~~ 334 (513)
+|++|+||||+++||.-+++++-.+|-++.+ .|+.++++||+. +++.-+++++++|+ .|+++..-+++-
T Consensus 150 eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~~~~df 221 (259)
T COG4525 150 EPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI-EEALFLATRLVVLSPGPGRVVERLPLDF 221 (259)
T ss_pred CcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHhhhheeEEecCCCceeeEecCCCH
Confidence 9999999999999999999999999999874 599999988876 57888999999997 589998777763
No 194
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-42 Score=374.57 Aligned_cols=218 Identities=20% Similarity=0.332 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++.|. ++.+|+||||++++||+++|+||||||||||+|+|+|+++|+ ..+|+|.++|.+....
T Consensus 5 ~l~~~nl~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~ 78 (506)
T PRK13549 5 LLEMKNITKTFG-----GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRD 78 (506)
T ss_pred eEEEeeeEEEeC-----CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHH
Confidence 589999999984 346999999999999999999999999999999999999862 0249999999875321
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcC-C-CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL-P-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~-~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
.+.++|++|++.+++.+||+||+.+...... . ....+..++++++++.++|.+..++.++ +|||||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgGqkqrv 152 (506)
T PRK13549 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG------NLGLGQQQLV 152 (506)
T ss_pred HHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh------hCCHHHHHHH
Confidence 2459999999999999999999987643221 1 1112334568899999999877777554 9999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
+|||||+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. ..+..+||++++|++|++++.|+++++
T Consensus 153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999999999999999999999999987799999988876 578899999999999999999988654
No 195
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.1e-42 Score=374.29 Aligned_cols=216 Identities=20% Similarity=0.356 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||+++|. ++.+|+|+||++.+||+++|+||||||||||+|+|+|+++|+. |+|.++|.+....
T Consensus 4 ~i~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 75 (501)
T PRK10762 4 LLQLKGIDKAFP-----GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDA---GSILYLGKEVTFNGPKS 75 (501)
T ss_pred eEEEeeeEEEeC-----CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHHH
Confidence 589999999994 3469999999999999999999999999999999999999875 9999999875321
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcC--CC-chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQL--PG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~--~~-~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++.+||+||+.++..... .. ...+.++++.++++.+||.+..++.++ +||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qr 149 (501)
T PRK10762 76 SQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG------ELSIGEQQM 149 (501)
T ss_pred HHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh------hCCHHHHHH
Confidence 2469999999999999999999987543210 11 112234568899999999887777554 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. .++..+||+|++|++|+++..|+++++
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 9999999999999999999999999999999999999987789999988886 578899999999999999999987654
No 196
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.4e-41 Score=337.95 Aligned_cols=216 Identities=18% Similarity=0.216 Sum_probs=179.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCC---C
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKSEM---P 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~-~~~G~I~i~G~~~~~---~ 180 (513)
.++++|+++.| + +.+|+|+||++++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|++... .
T Consensus 4 ~l~~~~l~~~~-~-----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A-----QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALR 77 (254)
T ss_pred EEEEeCeEEEe-c-----cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccc
Confidence 68999999988 2 359999999999999999999999999999999999998810 024999999987532 1
Q ss_pred CceEEEEcCCcc--cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh---HHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 YGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD---YANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 ~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---~~~~~vg~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++. +.+.+|+.+++.+.+...... ...+.+.++++.++|.+ ..++. +..||||||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~------~~~LS~Gq~qr 148 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP---ADDATLTAALEAVGLENAARVLKLY------PFEMSGGMLQR 148 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCC---hHHHHHHHHHHHcCCCChhhhhhcC------CcccCHHHHHH
Confidence 246999999974 556689999986643221111 22356889999999976 34553 45999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|||+++|++ .++..+||++++|++|++++.|++++
T Consensus 149 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 227 (254)
T PRK10418 149 MMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVET 227 (254)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999764 89999988886 57888999999999999999999877
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
+.
T Consensus 228 ~~ 229 (254)
T PRK10418 228 LF 229 (254)
T ss_pred Hh
Confidence 64
No 197
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=7.6e-42 Score=332.64 Aligned_cols=209 Identities=28% Similarity=0.403 Sum_probs=177.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|..+. ..+.+|+|+||++++|++++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 2 l~~~~l~~~~~~~~-~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 77 (220)
T TIGR02982 2 ISIRNLNHYYGHGS-LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE---GSLKVLGQELYGASEKEL 77 (220)
T ss_pred EEEEEEEEEccCCC-cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEhHhcCHhHH
Confidence 68999999985321 12569999999999999999999999999999999999999875 999999987531
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++.+|+.||+.+...........+..+.+.++++.+||.+..++.+ +.||||||||++
T Consensus 78 ~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qrv~ 151 (220)
T TIGR02982 78 VQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP------HNLSGGQKQRVA 151 (220)
T ss_pred HHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh------hhCCHHHHHHHH
Confidence 125699999999999989999999886543211111234457889999999988877754 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|||+|+.+|++|||||||+|||+.++..+++.|+++.+ .++|||+++|+.. +.++||++++|++|++
T Consensus 152 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 152 IARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999986 4899999999873 4689999999999986
No 198
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-43 Score=321.40 Aligned_cols=218 Identities=25% Similarity=0.295 Sum_probs=190.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..|+++||.++| +...+|++||+..+.|+++.|||.|||||||+|+||.-+..|.. |.|.++|+.+..
T Consensus 5 ~~l~v~dlHK~~-----G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~---G~I~v~geei~~k~~~ 76 (256)
T COG4598 5 NALEVEDLHKRY-----GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA---GSIRVNGEEIRLKRDK 76 (256)
T ss_pred cceehhHHHhhc-----ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCC---ceEEECCeEEEeeeCC
Confidence 368889998888 45679999999999999999999999999999999999999975 999999975311
Q ss_pred -------C-------CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCC
Q 010314 180 -------P-------YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245 (513)
Q Consensus 180 -------~-------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~ 245 (513)
. +.+.++|+|+..|+.++||.||+..+..--+.....+..++.+.+|..+|+.+..+. ||
T Consensus 77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~------YP 150 (256)
T COG4598 77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADA------YP 150 (256)
T ss_pred CCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhc------Cc
Confidence 0 124799999999999999999997654322222334566778899999999887765 67
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.. ..+.+.+.+|++|++|.
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM-~FAR~Vss~v~fLh~G~ 229 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEM-GFARDVSSHVIFLHQGK 229 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeeh-hHHHhhhhheEEeecce
Confidence 79999999999999999999999999999999999999999999999999999999989886 58889999999999999
Q ss_pred EEEEeChHHHH
Q 010314 326 TLFFGETLACL 336 (513)
Q Consensus 326 iv~~G~~~~~~ 336 (513)
+-+.|+|++++
T Consensus 230 iEE~G~P~qvf 240 (256)
T COG4598 230 IEEEGPPEQVF 240 (256)
T ss_pred ecccCChHHHh
Confidence 99999999875
No 199
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-41 Score=340.25 Aligned_cols=219 Identities=19% Similarity=0.275 Sum_probs=178.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++ |....+|+|.++|.+...
T Consensus 23 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 23 VVFDTQNLNLWYG-----EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred eEEEEeeeEEEEC-----CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 3689999999984 2469999999999999999999999999999999999986 211125999999987521
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh----hHHhhhhcCCCCCCCCCH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS----DYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~----~~~~~~vg~~~~~~~LSG 250 (513)
..+.++|++|++.+++ .||.||+.+................+.++++.+++. +..++ .+..|||
T Consensus 98 ~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~------~~~~LSg 170 (271)
T PRK14238 98 YSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHD------NAYGLSG 170 (271)
T ss_pred ccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhc------CcccCCH
Confidence 1346999999998887 499999987653321111112234567777777653 23333 4569999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||||+|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||+++|+. ..+..+||++++|++|++++.|
T Consensus 171 Ge~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g 248 (271)
T PRK14238 171 GQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYD 248 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999975 78999988886 5788999999999999999999
Q ss_pred ChHHHH
Q 010314 331 ETLACL 336 (513)
Q Consensus 331 ~~~~~~ 336 (513)
++.++.
T Consensus 249 ~~~~~~ 254 (271)
T PRK14238 249 DTDKIF 254 (271)
T ss_pred CHHHHH
Confidence 987753
No 200
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.1e-42 Score=372.13 Aligned_cols=211 Identities=21% Similarity=0.322 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++.|. .+.+|+|+||.+++|++++|+|||||||||||++|+|+++|+. |+|.++|.+....
T Consensus 11 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~ 82 (510)
T PRK15439 11 LLCARSISKQYS-----GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS---GTLEIGGNPCARLTPAK 82 (510)
T ss_pred eEEEEeEEEEeC-----CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHHH
Confidence 589999999994 3469999999999999999999999999999999999999875 9999999875321
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
...++|++|++.+++.+||+||+.+... . ....++++.++++.++|.+..++.++ +|||||||||+|
T Consensus 83 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~---~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~l 151 (510)
T PRK15439 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLP--K---RQASMQKMKQLLAALGCQLDLDSSAG------SLEVADRQIVEI 151 (510)
T ss_pred HHhCCEEEEeccCccCCCCcHHHHhhcccc--c---chHHHHHHHHHHHHcCCCccccCChh------hCCHHHHHHHHH
Confidence 1358999999999999999999977431 1 12334668899999999887777554 999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. ..+..+||++++|++|++++.|++++.
T Consensus 152 a~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 152 LRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999999999999999999999999999999999987899999988886 578899999999999999999988765
No 201
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.9e-41 Score=339.73 Aligned_cols=222 Identities=23% Similarity=0.236 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEecc----ccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 010314 105 SVVWKDLTVTIKGK----RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~----~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (513)
.++++||++.|... ....+.+|+|+||++++|++++|+||||||||||+++|+|+.+|++ |+|.++|.+...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~s---G~i~~~g~~~~~~ 79 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ---GNVSWRGEPLAKL 79 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccc
Confidence 47899999998520 0013569999999999999999999999999999999999998874 999999986431
Q ss_pred -------CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCC
Q 010314 180 -------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 -------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LS 249 (513)
..+.++|++|++ .+++..|+.|++.+................++++++.+++. ...++. +..||
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~~LS 153 (268)
T PRK10419 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKR------PPQLS 153 (268)
T ss_pred ChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCC------CccCC
Confidence 124699999997 46778999999876432111111123345688999999996 566664 45999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
||||||++|||||+.+|+||||||||+|||+.++..+.+.|++++++ |.|+|+++|++ ..+..+||++++|++|++++
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999999865 89999988886 57888999999999999999
Q ss_pred EeChHHHH
Q 010314 329 FGETLACL 336 (513)
Q Consensus 329 ~G~~~~~~ 336 (513)
.|+++++.
T Consensus 233 ~g~~~~~~ 240 (268)
T PRK10419 233 TQPVGDKL 240 (268)
T ss_pred eCChhhcc
Confidence 99987754
No 202
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-41 Score=347.59 Aligned_cols=226 Identities=19% Similarity=0.235 Sum_probs=183.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (513)
..++++|+++.|.+ ..+.+|+|+||+|++||++||+|+||||||||+++|+|+.++. ...+|+|.++|.++..
T Consensus 79 ~~i~~~nls~~y~~---~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 79 NVFEIRNFNFWYMN---RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred ceEEEEeeEEEecC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 47899999999953 2346999999999999999999999999999999999998631 0125999999987631
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
.++.++|++|++.+++ .|++||+.|+.............+.+.++++.++|.+..+..+ ..++..|||||||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~--~~~~~~LSgGqkq 232 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDL--DKAGNALSGGQQQ 232 (329)
T ss_pred cchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhh--hCCcccCCHHHHH
Confidence 2357999999999885 7999999886433211111112344678889998854333322 2356799999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
||+|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||+++|+. ..+.++||+|++|++|++++.|++.+
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g~~~~ 310 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAGETKT 310 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 68999988887 57888999999999999999999998
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
++.
T Consensus 311 l~~ 313 (329)
T PRK14257 311 IFI 313 (329)
T ss_pred Hhc
Confidence 753
No 203
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-41 Score=341.13 Aligned_cols=218 Identities=22% Similarity=0.291 Sum_probs=179.4
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC-
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~- 179 (513)
...++++||++.|. .+.+|+|+||.|.+||+++|+||||||||||+++|+|++++.. ..+|+|.++|.+...
T Consensus 37 ~~~l~i~~l~~~~~-----~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~ 111 (285)
T PRK14254 37 ETVIEARDLNVFYG-----DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111 (285)
T ss_pred CceEEEEEEEEEEC-----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 34689999999984 2469999999999999999999999999999999999986310 125999999986421
Q ss_pred ------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh----HHhhhhcCCCCCCCCC
Q 010314 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD----YANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~vg~~~~~~~LS 249 (513)
..+.++|++|++.+++. ||.||+.+........ ....++++++++.++|.. ..++ .+.+||
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~i~~~~~~------~~~~LS 182 (285)
T PRK14254 112 DVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYD--GDIDERVEESLRRAALWDEVKDQLDS------SGLDLS 182 (285)
T ss_pred ccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCc--HHHHHHHHHHHHHcCCCchhHHHHhC------CcccCC
Confidence 13569999999988875 9999998765432111 123456889999999853 3344 456999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEE-EEeCCeEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC-LLSNGNTLF 328 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~-vL~~G~iv~ 328 (513)
|||||||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ .|||+++|+. ..+..+||+++ +|++|++++
T Consensus 183 gGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 183 GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNM-QQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEE
Confidence 99999999999999999999999999999999999999999999764 7999988886 57888999975 679999999
Q ss_pred EeChHHHH
Q 010314 329 FGETLACL 336 (513)
Q Consensus 329 ~G~~~~~~ 336 (513)
.|++.++.
T Consensus 261 ~g~~~~~~ 268 (285)
T PRK14254 261 FDDTDKIF 268 (285)
T ss_pred eCCHHHHH
Confidence 99887653
No 204
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.1e-41 Score=333.88 Aligned_cols=201 Identities=22% Similarity=0.256 Sum_probs=170.3
Q ss_pred eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC----CCCceeEEEECCEeCCC---CCceEEEEcCCcc--cCC
Q 010314 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH----SARMYGEVFVNGAKSEM---PYGSYGFVERETT--LIG 195 (513)
Q Consensus 125 iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~----~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~--l~~ 195 (513)
+|+|+|+++++|++++|+||||||||||+++|+|+++| + +|+|.++|++... ..+.++|++|++. +++
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57899999999999999999999999999999999988 5 4999999987532 1246999999974 567
Q ss_pred CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh---hHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q 010314 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS---DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFID 272 (513)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~---~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllD 272 (513)
.+|+.|++.+......... ....+++.++++.++|. +..++.+ ..|||||||||+|||||+.+|+|||||
T Consensus 78 ~~t~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~------~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLS-KQARALILEALEAVGLPDPEEVLKKYP------FQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred ccCHHHHHHHHHHHcCccH-HHHHHHHHHHHHHcCCCchHHHHhCCh------hhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 7899999976543221111 23345688999999997 4555544 499999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 273 EPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||+|||+.++..+.+.|++++++ |+|||+++|+. +++..+||++++|++|+++..|+++++.
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999864 89999988886 5788999999999999999999987764
No 205
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=8e-42 Score=328.63 Aligned_cols=197 Identities=24% Similarity=0.306 Sum_probs=167.6
Q ss_pred EEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---C-----
Q 010314 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---M----- 179 (513)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---~----- 179 (513)
++|+++.|. ++.+|+|+||.+++||+++|+||||||||||+++|+|+++|+. |+|.++|.+.. .
T Consensus 1 i~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 1 LKNISKKFG-----DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDS---GQVYLNGKETPPLNSKKASK 72 (206)
T ss_pred CcceEEEEC-----CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEccccchhhHHH
Confidence 468888884 3469999999999999999999999999999999999999875 99999998732 1
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++.+++.+|++||+.+...... ....+..+.+.++++.++|.+..++.+ .+||||||||++|
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~lS~G~~qr~~l 145 (206)
T TIGR03608 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKK-LSKKEKREKKKEALEKVGLNLKLKQKI------YELSGGEQQRVAL 145 (206)
T ss_pred HHHhCeeEEecchhhccCCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCchhhhcCCh------hhCCHHHHHHHHH
Confidence 12469999999999999999999988654321 111234457889999999988877754 4999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (513)
||||+.+|++|||||||+|||+.++..+.+.|+++.++|.|+|+++|++. . ..+||++++|
T Consensus 146 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~-~~~~d~i~~l 206 (206)
T TIGR03608 146 ARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE-V-AKQADRVIEL 206 (206)
T ss_pred HHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HhhcCEEEeC
Confidence 99999999999999999999999999999999999877899999888874 4 4689999875
No 206
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-42 Score=372.28 Aligned_cols=216 Identities=19% Similarity=0.331 Sum_probs=185.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++|+++.|. .+.+|+|+||++++||+++|+||||||||||+|+|+|+++|+. |+|.++|.+....
T Consensus 5 ~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~~ 76 (510)
T PRK09700 5 YISMAGIGKSFG-----PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTK---GTITINNINYNKLDHKL 76 (510)
T ss_pred eEEEeeeEEEcC-----CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCc---cEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999998875 9999999875321
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhc--CCC----chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQ--LPG----FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~--~~~----~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGq 252 (513)
.+.++|++|++.+++.+||+||+.++.... ... ...+..+++.++++.+||.+..++.+ .+|||||
T Consensus 77 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgG~ 150 (510)
T PRK09700 77 AAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV------ANLSISH 150 (510)
T ss_pred HHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch------hhCCHHH
Confidence 235999999999999999999997653210 001 11233456889999999987777755 4999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
||||+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. ..+..+||++++|++|++++.|++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecch
Confidence 9999999999999999999999999999999999999999987899999988875 578899999999999999999988
Q ss_pred HHH
Q 010314 333 LAC 335 (513)
Q Consensus 333 ~~~ 335 (513)
+++
T Consensus 230 ~~~ 232 (510)
T PRK09700 230 SDV 232 (510)
T ss_pred hhC
Confidence 764
No 207
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=4.4e-41 Score=333.65 Aligned_cols=217 Identities=18% Similarity=0.256 Sum_probs=178.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~--~~~~~~~~G~I~i~G~~~~~-- 179 (513)
..++++||++.|. .+.+|+||||++++||++||+|+||||||||+++|+|+ ++|. +|+|.++|.+...
T Consensus 6 ~~l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~ 77 (252)
T CHL00131 6 PILEIKNLHASVN-----ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL---EGDILFKGESILDLE 77 (252)
T ss_pred ceEEEEeEEEEeC-----CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC---CceEEECCEEcccCC
Confidence 3689999999984 24699999999999999999999999999999999998 4565 4999999987432
Q ss_pred ---CC-ceEEEEcCCcccCCCCCHHHHHHHHHHhcC-----CC-chhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCC
Q 010314 180 ---PY-GSYGFVERETTLIGSLTVREYLYYSALLQL-----PG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGL 248 (513)
Q Consensus 180 ---~~-~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-----~~-~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~L 248 (513)
.. ..++|++|++.+++.+|+.+++.+...... .. ...+..+.+.++++.+++. ...++.+. ..|
T Consensus 78 ~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~L 152 (252)
T CHL00131 78 PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN-----EGF 152 (252)
T ss_pred hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc-----cCC
Confidence 11 247899999999999999999876532110 00 0012235678899999997 45555432 259
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhc-CCEEEEEeCCeEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTL 327 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv 327 (513)
||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|++ ..+..+ ||++++|++|+++
T Consensus 153 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~-~~~~~~~~d~i~~l~~G~i~ 231 (252)
T CHL00131 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQ-RLLDYIKPDYVHVMQNGKII 231 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHhhhCCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999987789999988886 456666 8999999999999
Q ss_pred EEeChHH
Q 010314 328 FFGETLA 334 (513)
Q Consensus 328 ~~G~~~~ 334 (513)
+.|+++.
T Consensus 232 ~~~~~~~ 238 (252)
T CHL00131 232 KTGDAEL 238 (252)
T ss_pred EecChhh
Confidence 9998874
No 208
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.8e-41 Score=333.46 Aligned_cols=215 Identities=25% Similarity=0.359 Sum_probs=171.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (513)
++++|+++.|.+. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~~~ 74 (237)
T cd03252 1 ITFEHVRFRYKPD---GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPEN---GRVLVDGHDLALADPAWL 74 (237)
T ss_pred CEEEEEEEecCCC---CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCeehHhcCHHHH
Confidence 4689999988421 2469999999999999999999999999999999999999875 999999986421 1
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++ .||.||+.+... .. ....+.+.++..++.+..+....+ +..+.+||||||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~----~~---~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qr 146 (237)
T cd03252 75 RRQVGVVLQENVLFN-RSIRDNIALADP----GM---SMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQR 146 (237)
T ss_pred hhcEEEEcCCchhcc-chHHHHhhccCC----CC---CHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHH
Confidence 346999999998875 699999976321 10 112233444445554443322100 12457999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++. ++ ..||++++|++|++++.|+++++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~ 223 (237)
T cd03252 147 IAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSHDEL 223 (237)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999999974 899999999874 56 46999999999999999998776
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
..
T Consensus 224 ~~ 225 (237)
T cd03252 224 LA 225 (237)
T ss_pred Hh
Confidence 53
No 209
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=377.31 Aligned_cols=222 Identities=21% Similarity=0.225 Sum_probs=185.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE----- 178 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~----- 178 (513)
..++++||++.|.... ....+|+||||++.+||++||+||||||||||+++|+|+++|+. |+|.++|....
T Consensus 11 ~~l~v~~l~~~y~~~~-~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~---G~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 11 DVLAVENLNIAFMQEQ-QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAG---GLVQCDKMLLRRRSRQ 86 (623)
T ss_pred ceEEEeceEEEecCCC-CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---eEEEECCEEecccccc
Confidence 3689999999995321 12469999999999999999999999999999999999998875 99999885320
Q ss_pred -----C---------CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh---HHhhhh
Q 010314 179 -----M---------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD---YANKLI 239 (513)
Q Consensus 179 -----~---------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---~~~~~v 239 (513)
. ..+.+|||+|++ .+++.+||.||+.+...........+.++++.++++.+||.+ ..++
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-- 164 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSR-- 164 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhC--
Confidence 0 113699999997 688999999999987654211112234567889999999953 4454
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEE
Q 010314 240 GGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRI 318 (513)
Q Consensus 240 g~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v 318 (513)
++++|||||||||+|||||+.+|+||||||||++||+.++.+++++|++++++ |+|||+++|+. ..+..+||+|
T Consensus 165 ----~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adri 239 (623)
T PRK10261 165 ----YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADRV 239 (623)
T ss_pred ----CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEE
Confidence 55699999999999999999999999999999999999999999999999865 89999988876 5788999999
Q ss_pred EEEeCCeEEEEeChHHHH
Q 010314 319 CLLSNGNTLFFGETLACL 336 (513)
Q Consensus 319 ~vL~~G~iv~~G~~~~~~ 336 (513)
++|++|++++.|++.+++
T Consensus 240 ~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 240 LVMYQGEAVETGSVEQIF 257 (623)
T ss_pred EEeeCCeecccCCHHHhh
Confidence 999999999999987764
No 210
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=6.2e-42 Score=379.96 Aligned_cols=218 Identities=22% Similarity=0.350 Sum_probs=188.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++|+|.. ....+|+|+|++|++||.+||+|+||||||||+|+|+|+++|.. |+|++||.+...
T Consensus 470 g~I~~~nvsf~y~~---~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~---G~I~~dg~dl~~i~~~ 543 (709)
T COG2274 470 GEIEFENVSFRYGP---DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ---GRILLDGVDLNDIDLA 543 (709)
T ss_pred ceEEEEEEEEEeCC---CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEeHHhcCHH
Confidence 47999999999963 22369999999999999999999999999999999999999975 999999988532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCC-----CCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM-----KGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~-----~~LSGGqr 253 (513)
.++.+|||+|++.+|. -|++||+.++ .|. ...+.+.++++..|..++....+.|+.++ .+||||||
T Consensus 544 ~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~----~p~---~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr 615 (709)
T COG2274 544 SLRRQVGYVLQDPFLFS-GSIRENIALG----NPE---ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR 615 (709)
T ss_pred HHHhheeEEcccchhhc-CcHHHHHhcC----CCC---CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence 2468999999999995 4999999653 222 23466788888899988877766655443 56999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.+.+.|++.|.++. .|+|+|+++|+++ ..+.||+|++|++|+++..|+.+
T Consensus 616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv~~gs~~ 692 (709)
T COG2274 616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVLDQGKIVEQGSHE 692 (709)
T ss_pred HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEccCCceeccCCHH
Confidence 99999999999999999999999999999999999999986 4789999999974 67889999999999999999999
Q ss_pred HHHHH
Q 010314 334 ACLQH 338 (513)
Q Consensus 334 ~~~~~ 338 (513)
+++..
T Consensus 693 ell~~ 697 (709)
T COG2274 693 ELLAQ 697 (709)
T ss_pred HHHHh
Confidence 88753
No 211
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-41 Score=334.54 Aligned_cols=221 Identities=20% Similarity=0.238 Sum_probs=182.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~~-- 179 (513)
..+.++++++.|. .+.+|+|+||.+++||+++|+|+||||||||+++|+|+++|.. ..+|+|.++|.+...
T Consensus 7 ~~~~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 81 (261)
T PRK14263 7 IVMDCKLDKIFYG-----NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG 81 (261)
T ss_pred ceEEEEeEEEEeC-----CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccc
Confidence 4689999998883 3469999999999999999999999999999999999997621 135999999987521
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
..+.++|++|++.++ .+|+.||+.+........ ....+.+.++++.++|.+...... ..+++.|||||+|
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~i~~~~--~~~~~~LS~G~~q 156 (261)
T PRK14263 82 VDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK--GDLGDRVKHALQGAALWDEVKDKL--KVSGLSLSGGQQQ 156 (261)
T ss_pred cchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCch--HHHHHHHHHHHHHcCCchhhhhhh--hCCcccCCHHHHH
Confidence 134699999999888 589999998875432211 223456889999999865332222 2356799999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe--------CCeE
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS--------NGNT 326 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~--------~G~i 326 (513)
|++|||||+.+|+||||||||+|||+.++..+++.|++++ +++|+|+++|++ .++.++||++++|+ +|++
T Consensus 157 rv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~G~i 234 (261)
T PRK14263 157 RLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNM-QQAIRVADTTAFFSVDISQGTRTGYL 234 (261)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHHhCCEEEEEecccccccCCceE
Confidence 9999999999999999999999999999999999999996 478999988886 57889999999996 8999
Q ss_pred EEEeChHHHH
Q 010314 327 LFFGETLACL 336 (513)
Q Consensus 327 v~~G~~~~~~ 336 (513)
++.|+.+++.
T Consensus 235 ~~~g~~~~~~ 244 (261)
T PRK14263 235 VEMGPTAQIF 244 (261)
T ss_pred EEeCCHHHHH
Confidence 9999988764
No 212
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-41 Score=336.86 Aligned_cols=217 Identities=22% Similarity=0.292 Sum_probs=180.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC------EeC
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG------AKS 177 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G------~~~ 177 (513)
..+.++|++++|. .+.+|+|+||.+.+||+++|+|+||||||||+++|+|+.+|+. |+|.++| .+.
T Consensus 9 ~~i~~~~~~~~~~-----~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~---G~v~~~G~~~~~g~~~ 80 (257)
T PRK14246 9 DVFNISRLYLYIN-----DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYD---SKIKVDGKVLYFGKDI 80 (257)
T ss_pred hheeeeeEEEecC-----CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---CceeEcCEEEECCccc
Confidence 4689999999984 4569999999999999999999999999999999999998864 5555554 433
Q ss_pred CC-----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh----HHhhhhcCCCCCCCC
Q 010314 178 EM-----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD----YANKLIGGHCYMKGL 248 (513)
Q Consensus 178 ~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~vg~~~~~~~L 248 (513)
.. ....++|++|++.+++.+||+||+.+...........+..+.+.++++.+++.+ ..++ .+..|
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~L 154 (257)
T PRK14246 81 FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNS------PASQL 154 (257)
T ss_pred ccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcC------CcccC
Confidence 21 134689999999999999999999876433211111233456889999999964 3333 45699
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|.++++ +.|||+++|+. ..+..+||++++|++|+++.
T Consensus 155 S~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~ 232 (257)
T PRK14246 155 SGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNP-QQVARVADYVAFLYNGELVE 232 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999965 68999988886 57889999999999999999
Q ss_pred EeChHHHH
Q 010314 329 FGETLACL 336 (513)
Q Consensus 329 ~G~~~~~~ 336 (513)
.|+.++..
T Consensus 233 ~g~~~~~~ 240 (257)
T PRK14246 233 WGSSNEIF 240 (257)
T ss_pred ECCHHHHH
Confidence 99988764
No 213
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-41 Score=331.26 Aligned_cols=222 Identities=20% Similarity=0.273 Sum_probs=180.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~~--- 179 (513)
.++++||++.|. .+.+|+|+||++.+||+++|+||||||||||+++|+|+.+ |....+|+|.++|.+...
T Consensus 3 ~l~~~~v~~~~~-----~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 77 (250)
T PRK14266 3 RIEVENLNTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 (250)
T ss_pred EEEEEeEEEEeC-----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence 588999999884 3469999999999999999999999999999999999864 210125999999987532
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.++|++|++.+++. |+.||+.+..............+++.++++.++|.+...... +..+..||||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LS~Gq~qr 154 (250)
T PRK14266 78 DVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKL--DKSALGLSGGQQQR 154 (250)
T ss_pred cHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHH--hCCcccCCHHHHHH
Confidence 13469999999988875 999999876432211111223466888999999854322221 23456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
++|||||+.+|+||||||||+|||+.++..+.++|+++++ +.|||+++|+. .++..+||++++|++|++++.|+++++
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999964 78999988887 578999999999999999999998876
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
.
T Consensus 233 ~ 233 (250)
T PRK14266 233 F 233 (250)
T ss_pred H
Confidence 4
No 214
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-41 Score=337.41 Aligned_cols=222 Identities=18% Similarity=0.217 Sum_probs=179.9
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC-
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~- 179 (513)
...+.++||++.|. .+.+|+|+||.+++||+++|+||||||||||+++|+|++++. ...+|+|.++|.+...
T Consensus 18 ~~~l~~~nl~~~~~-----~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~ 92 (274)
T PRK14265 18 HSVFEVEGVKVFYG-----GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDS 92 (274)
T ss_pred CceEEEeeEEEEeC-----CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccc
Confidence 34799999999984 346999999999999999999999999999999999997531 1125999999986521
Q ss_pred ------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHH
Q 010314 180 ------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 180 ------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqr 253 (513)
..+.++|++|++.+++. ||.||+.+........ ...++.+.++++.+++........ ..++..||||||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LSgGq~ 167 (274)
T PRK14265 93 QINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYK--GNLDELVEDSLRRAAIWEEVKDKL--KEKGTALSGGQQ 167 (274)
T ss_pred cchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCch--HHHHHHHHHHHHHcccchhhHHHh--cCCcccCCHHHH
Confidence 13469999999988875 9999998764322111 122345677888888743221111 235569999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe---------CC
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS---------NG 324 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~---------~G 324 (513)
|||+|||||+.+|+||||||||+|||+.++..+.++|+++++ +.|||+++|+. ..+.++||++++|+ +|
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~~~~G 245 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYGKRRG 245 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCH-HHHHHhCCEEEEEecccccccccCc
Confidence 999999999999999999999999999999999999999975 68999988887 57889999999998 89
Q ss_pred eEEEEeChHHHH
Q 010314 325 NTLFFGETLACL 336 (513)
Q Consensus 325 ~iv~~G~~~~~~ 336 (513)
++++.|++.++.
T Consensus 246 ~~~~~g~~~~~~ 257 (274)
T PRK14265 246 KLVEFSPTEQMF 257 (274)
T ss_pred eEEEeCCHHHHH
Confidence 999999998874
No 215
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-41 Score=338.77 Aligned_cols=216 Identities=20% Similarity=0.335 Sum_probs=178.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--Cc
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--YG 182 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--~~ 182 (513)
.++++|+++.|.+ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+.... ..
T Consensus 6 ~l~~~~l~~~~~~----~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~~ 78 (272)
T PRK15056 6 GIVVNDVTVTWRN----GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS---GKISILGQPTRQALQKN 78 (272)
T ss_pred eEEEEeEEEEecC----CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEhHHhhccc
Confidence 5899999999842 2469999999999999999999999999999999999999875 9999999875321 23
Q ss_pred eEEEEcCCcccC--CCCCHHHHHHHHHHh--cC-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 183 SYGFVERETTLI--GSLTVREYLYYSALL--QL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 183 ~~~yv~Q~~~l~--~~lTV~E~l~~~~~~--~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.++|++|++.+. ...++++++.+.... .. ........+.+.++++.+||.+..++.+ ..|||||||||+
T Consensus 79 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgG~~qrv~ 152 (272)
T PRK15056 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI------GELSGGQKKRVF 152 (272)
T ss_pred eEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc------ccCCHHHHHHHH
Confidence 599999997652 234788988653211 00 0011123456788999999988877755 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||+++|++ +++.++||+++++ +|++++.|+++++
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 99999999999999999999999999999999999987789999988886 5788999999877 8999999988765
No 216
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.5e-41 Score=328.63 Aligned_cols=209 Identities=26% Similarity=0.394 Sum_probs=173.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|.+. .+.+|+|+||++++|++++|+||||||||||+++|+|+.+|+. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~~---~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~ 75 (220)
T cd03245 2 RIEFRNVSFSYPNQ---EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTS---GSVLLDGTDIRQLDPAD 75 (220)
T ss_pred eEEEEEEEEEcCCC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CeEEECCEEhHHCCHHH
Confidence 37899999998421 2469999999999999999999999999999999999998875 999999986422
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqrq 254 (513)
..+.++|++|++.+++ .||.||+.+.. .. .....+.++++.+++.+..++.+.+. ..+..|||||||
T Consensus 76 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~----~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~q 147 (220)
T cd03245 76 LRRNIGYVPQDVTLFY-GTLRDNITLGA----PL---ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQ 147 (220)
T ss_pred HHhhEEEeCCCCcccc-chHHHHhhcCC----CC---CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHH
Confidence 1246899999998886 69999996531 11 11245678899999988877654211 134699999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++ +|||+++|+.. .+ ++||++++|++|++++.|
T Consensus 148 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 148 AVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999999999999999999764 89999898874 44 799999999999998754
No 217
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-41 Score=335.02 Aligned_cols=221 Identities=21% Similarity=0.260 Sum_probs=179.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH--SARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~--~~~~~G~I~i~G~~~~~-- 179 (513)
..+.++||++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+.++ ....+|+|.++|.+...
T Consensus 9 ~~l~i~~v~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 9 TVLRTENLNVYYG-----SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred eEEEEeeeEEEEC-----CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 3689999999984 24699999999999999999999999999999999999753 10125999999986521
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
..+.++|++|++.+++ .||.||+.+........ ....+.+.++++.+++.+...... ...+..|||||||
T Consensus 84 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~l~~~~--~~~~~~LSgGq~q 158 (264)
T PRK14243 84 VDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYK--GDMDELVERSLRQAALWDEVKDKL--KQSGLSLSGGQQQ 158 (264)
T ss_pred cChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcc--hHHHHHHHHHHHHhCchhhHHHHh--cCCcccCCHHHHH
Confidence 1346999999998887 49999998765332111 123355677888888853222111 2355699999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe---------CCe
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS---------NGN 325 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~---------~G~ 325 (513)
||+|||||+.+|+||||||||+|||+.++..++++|+++++ ++|||+++|+. +++.++||++++|+ +|+
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~ 236 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGY 236 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCce
Confidence 99999999999999999999999999999999999999975 58999988886 58899999999998 899
Q ss_pred EEEEeChHHHH
Q 010314 326 TLFFGETLACL 336 (513)
Q Consensus 326 iv~~G~~~~~~ 336 (513)
+++.|+++++.
T Consensus 237 i~~~~~~~~~~ 247 (264)
T PRK14243 237 LVEFDRTEKIF 247 (264)
T ss_pred EEEeCCHHHHH
Confidence 99999988874
No 218
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-41 Score=358.71 Aligned_cols=216 Identities=25% Similarity=0.358 Sum_probs=186.0
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC----
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---- 178 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---- 178 (513)
+..+..+||++.|++ ++++++|+|+++++|+.+||+|+||||||||+++|+|+.+|+. |+|.+||.+..
T Consensus 318 ~~ei~~~~l~~~y~~----g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~---G~I~vng~~l~~l~~ 390 (559)
T COG4988 318 PIEISLENLSFRYPD----GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ---GEIRVNGIDLRDLSP 390 (559)
T ss_pred CceeeecceEEecCC----CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCC---ceEEECCccccccCH
Confidence 456677799999964 3479999999999999999999999999999999999999875 99999997643
Q ss_pred -CCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHH
Q 010314 179 -MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGE 252 (513)
Q Consensus 179 -~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGq 252 (513)
.++++++||+|++.+|+. |++||+.++. + ...++.+.++++..+|.++.+. ++|.+ ...+|||||
T Consensus 391 ~~~~k~i~~v~Q~p~lf~g-TireNi~l~~----~---~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ 461 (559)
T COG4988 391 EAWRKQISWVSQNPYLFAG-TIRENILLAR----P---DASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQ 461 (559)
T ss_pred HHHHhHeeeeCCCCccccc-cHHHHhhccC----C---cCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHH
Confidence 245789999999999976 9999997642 2 1345678999999999988766 33333 346799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
+|||++||||+.+++|+|+||||++||.++...|++.|.+++++ +|+++++|++ ....-+|+|++|++|++++.|..
T Consensus 462 ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl--~~~~~~D~I~vld~G~l~~~g~~ 538 (559)
T COG4988 462 AQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRL--EDAADADRIVVLDNGRLVEQGTH 538 (559)
T ss_pred HHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcCh--HHHhcCCEEEEecCCceeccCCH
Confidence 99999999999999999999999999999999999999999864 8999989986 45667999999999999999999
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
+++..
T Consensus 539 ~~L~~ 543 (559)
T COG4988 539 EELSE 543 (559)
T ss_pred HHHhh
Confidence 88754
No 219
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=3.5e-41 Score=334.10 Aligned_cols=198 Identities=23% Similarity=0.320 Sum_probs=170.0
Q ss_pred eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----CceEEEEcCCcccCCCCCH
Q 010314 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YGSYGFVERETTLIGSLTV 199 (513)
Q Consensus 125 iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~l~~~lTV 199 (513)
+|+|+||++++|++++|+||||||||||+++|+|+.++ +|+|.++|++.... .+.++|++|++.+++.+|+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 79999999999999999999999999999999999864 39999999875321 2358999999888888999
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 010314 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM-------RPHVLFID 272 (513)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~-------~P~iLllD 272 (513)
.||+.+...... ...+..+.++++++.++|.+..++.+ ..|||||||||+|||||+. +|++||||
T Consensus 87 ~~nl~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 87 FQYLTLHQPDKT--RTEAVASALNEVAEALGLDDKLGRSV------NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHHhcCccCC--CcHHHHHHHHHHHHHcCCHhHhcCCc------ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999977532111 11223456889999999987777654 4999999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|||+|||+.++..+.++|++++++|.|||+++|+. .++..+||++++|++|++++.|+.+++
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999987789999988886 478899999999999999999987765
No 220
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-41 Score=329.53 Aligned_cols=214 Identities=24% Similarity=0.343 Sum_probs=175.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|.+ .+.+++|+||++++|++++|+||||||||||+++|+|+++|.. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~----~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 74 (229)
T cd03254 2 EIEFENVNFSYDE----KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQK---GQILIDGIDIRDISRKS 74 (229)
T ss_pred eEEEEEEEEecCC----CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCEeHHHcCHHH
Confidence 4789999999842 2359999999999999999999999999999999999999875 999999976432
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrq 254 (513)
..+.++|++|++.+++. ||.||+.+... . .....+.++++.+++.+..++...+ ...+..|||||||
T Consensus 75 ~~~~i~~~~q~~~~~~~-tv~~~~~~~~~----~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~ 146 (229)
T cd03254 75 LRSMIGVVLQDTFLFSG-TIMENIRLGRP----N---ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQ 146 (229)
T ss_pred HhhhEEEecCCchhhhh-HHHHHHhccCC----C---CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHH
Confidence 13468999999988875 99999976421 1 1123455667777776655543210 1245799999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
||+|||+|+.+|++|||||||+|||+.++..+++.|+++. +|+|||+++|++. ++. .||++++|++|++++.|+.++
T Consensus 147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~~~~ 223 (229)
T cd03254 147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TIK-NADKILVLDDGKIIEEGTHDE 223 (229)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HHh-hCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999986 5899999999874 554 599999999999999988766
Q ss_pred HH
Q 010314 335 CL 336 (513)
Q Consensus 335 ~~ 336 (513)
..
T Consensus 224 ~~ 225 (229)
T cd03254 224 LL 225 (229)
T ss_pred HH
Confidence 54
No 221
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.2e-41 Score=367.03 Aligned_cols=222 Identities=23% Similarity=0.305 Sum_probs=184.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEe---CC-
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN-GAK---SE- 178 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~-G~~---~~- 178 (513)
..++++||++.|.+.....+.+|+|+||.+++||+++|+||||||||||+++|+|+++|+. |+|.++ |.+ ..
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~---G~i~~~~g~~~~~~~~ 354 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTS---GEVNVRVGDEWVDMTK 354 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEEecCCccccccc
Confidence 3699999999985211122469999999999999999999999999999999999998874 999996 532 11
Q ss_pred -------CCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-----HHhhhhcCCCCCC
Q 010314 179 -------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-----YANKLIGGHCYMK 246 (513)
Q Consensus 179 -------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----~~~~~vg~~~~~~ 246 (513)
...+.++|++|++.+++.+||.||+.+...+..+. ...++++.++++.++|.+ ..++. +.
T Consensus 355 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~~------~~ 426 (520)
T TIGR03269 355 PGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPD--ELARMKAVITLKMVGFDEEKAEEILDKY------PD 426 (520)
T ss_pred cchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCH--HHHHHHHHHHHHhCCCCCccchhhhhCC------hh
Confidence 01245899999998999999999998754322211 223456889999999964 45554 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
+|||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++ |.|||+++|+. ..+.++||++++|++|+
T Consensus 427 ~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 505 (520)
T TIGR03269 427 ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMRDGK 505 (520)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999765 89999988886 57889999999999999
Q ss_pred EEEEeChHHHHH
Q 010314 326 TLFFGETLACLQ 337 (513)
Q Consensus 326 iv~~G~~~~~~~ 337 (513)
+++.|+++++..
T Consensus 506 i~~~g~~~~~~~ 517 (520)
T TIGR03269 506 IVKIGDPEEIVE 517 (520)
T ss_pred EEEECCHHHHHh
Confidence 999998877643
No 222
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.3e-41 Score=366.17 Aligned_cols=216 Identities=20% Similarity=0.357 Sum_probs=182.1
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++||++.|. .+.+|+||||++++|++++|+||||||||||+++|+|+++|+ ..+|+|.++|++....
T Consensus 2 l~i~~l~~~~~-----~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIVKTFG-----GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEEEEeC-----CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHH
Confidence 68999999984 346999999999999999999999999999999999998862 0249999999875321
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCC---CchhhHHHHHHHHHHHcCChhHH-hhhhcCCCCCCCCCHHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYA-NKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~-~~~vg~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++.+||.||+.+....... ....+..++++++++.++|.+.. ++.+ .+||||||||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG~~qr 149 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV------GDYGGGQQQL 149 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch------hhCCHHHHHH
Confidence 24699999999999999999999876432211 11123345688999999997654 3434 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+|||||+.+|+||||||||+|||+.++..+.+.|++++++|.|||+++|+. .++..+||+|++|++|+++..|++.+
T Consensus 150 v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 150 VEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCccc
Confidence 9999999999999999999999999999999999999988899999988876 57889999999999999999988754
No 223
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.8e-41 Score=321.56 Aligned_cols=197 Identities=22% Similarity=0.286 Sum_probs=169.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
++++|++++|. .+.+|+|+||.+++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 2 l~~~~l~~~~~-----~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~---G~v~~~g~~~~~~~~~~~ 73 (204)
T PRK13538 2 LEARNLACERD-----ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDA---GEVLWQGEPIRRQRDEYH 73 (204)
T ss_pred eEEEEEEEEEC-----CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccchHHhh
Confidence 68899999984 3469999999999999999999999999999999999999875 999999987532 13
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+||.||+.+...... . ...+.++++++.+||.+..++.+ ..||||||||++||||
T Consensus 74 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-~---~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G~~qrl~la~a 143 (204)
T PRK13538 74 QDLLYLGHQPGIKTELTALENLRFYQRLHG-P---GDDEALWEALAQVGLAGFEDVPV------RQLSAGQQRRVALARL 143 (204)
T ss_pred hheEEeCCccccCcCCcHHHHHHHHHHhcC-c---cHHHHHHHHHHHcCCHHHhhCCh------hhcCHHHHHHHHHHHH
Confidence 468999999999999999999987653321 1 23456889999999988777754 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (513)
|+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|+. ..+....+|++++
T Consensus 144 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 144 WLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCh-hhhccCCceEEec
Confidence 9999999999999999999999999999999987789999999987 4676767777766
No 224
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-40 Score=332.67 Aligned_cols=219 Identities=20% Similarity=0.242 Sum_probs=179.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEEECCEeCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVFVNGAKSE--- 178 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~i~G~~~~--- 178 (513)
..++++|+++.|. .+.+|+|+||++++||+++|+|+||||||||+++|+|+.+|.. ..+|+|.++|.+..
T Consensus 15 ~~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 15 QKSEVNKLNFYYG-----GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred ceEEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 4689999999984 3469999999999999999999999999999999999987521 13699999986532
Q ss_pred ------CCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh----HHhhhhcCCCCCCCC
Q 010314 179 ------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD----YANKLIGGHCYMKGL 248 (513)
Q Consensus 179 ------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~----~~~~~vg~~~~~~~L 248 (513)
...+.++|++|++.+++. ||+||+.+.............++.+.++++.+++.+ ..++ .+..|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~------~~~~L 162 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGD------LAFNL 162 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhC------CcccC
Confidence 113468999999999986 999999876432211111122456788888888742 3333 44599
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
||||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ +.|||+++|+. +++.++||++++|++|+++.
T Consensus 163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNM-QQAARVSDYTAYMYMGELIE 240 (265)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999975 68999988876 57889999999999999999
Q ss_pred EeChHHHH
Q 010314 329 FGETLACL 336 (513)
Q Consensus 329 ~G~~~~~~ 336 (513)
.|+.+++.
T Consensus 241 ~g~~~~~~ 248 (265)
T PRK14252 241 FGATDTIF 248 (265)
T ss_pred eCCHHHHH
Confidence 99987754
No 225
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.7e-41 Score=372.55 Aligned_cols=215 Identities=23% Similarity=0.336 Sum_probs=182.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.+.+ ++.+|+|+|+++++|+.+||+||||||||||+++|+|++ |. +|+|.+||.+...
T Consensus 348 ~~i~~~~vsf~~~~----~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~ 419 (588)
T PRK11174 348 VTIEAEDLEILSPD----GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPE 419 (588)
T ss_pred ceEEEEeeEEeccC----CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHH
Confidence 35999999986642 356999999999999999999999999999999999999 75 4999999987543
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++||+|++.+|.. |++|||.++. +. ..++++.++++..++.++..+++.|.+. ...||||||
T Consensus 420 ~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~~---~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQr 491 (588)
T PRK11174 420 SWRKHLSWVGQNPQLPHG-TLRDNVLLGN----PD---ASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA 491 (588)
T ss_pred HHHhheEEecCCCcCCCc-CHHHHhhcCC----CC---CCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHH
Confidence 13579999999999965 9999997641 21 2346788899999998877666554443 356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.++..|.+.|+++. +++|+|+++|++. ....||+|++|++|++++.|+.+
T Consensus 492 QRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i~e~G~~~ 568 (588)
T PRK11174 492 QRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQIVQQGDYA 568 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeEeecCCHH
Confidence 99999999999999999999999999999999999999885 5789999999973 45679999999999999999988
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 569 eL~~ 572 (588)
T PRK11174 569 ELSQ 572 (588)
T ss_pred HHHh
Confidence 7754
No 226
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-41 Score=366.05 Aligned_cols=213 Identities=17% Similarity=0.295 Sum_probs=181.1
Q ss_pred EEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC------C
Q 010314 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP------Y 181 (513)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~------~ 181 (513)
++|+++.|. ++.+|+|+||.+++||+++|+||||||||||+++|+|+++|++ |+|.++|++.... .
T Consensus 1 ~~nl~~~~~-----~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~ 72 (491)
T PRK10982 1 MSNISKSFP-----GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDS---GSILFQGKEIDFKSSKEALE 72 (491)
T ss_pred CCceEEEeC-----CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCc---eEEEECCEECCCCCHHHHHh
Confidence 368888884 3469999999999999999999999999999999999999875 9999999875321 2
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCC--CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLP--GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~--~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
+.++|++|++.+++.+||+||+.+....... ....+..++++++++.+++.+..++.+ .+|||||||||+||
T Consensus 73 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qrv~lA 146 (491)
T PRK10982 73 NGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV------ATLSVSQMQMIEIA 146 (491)
T ss_pred CCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch------hhCCHHHHHHHHHH
Confidence 4699999999899999999999875321101 111223456889999999987776654 49999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|||+.+|+||||||||+|||+.++..+++.|+++++.|.|||+++|+. +++..+||++++|++|+++..|++++.
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 999999999999999999999999999999999987899999988876 578899999999999999999987654
No 227
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=9.1e-41 Score=319.24 Aligned_cols=188 Identities=46% Similarity=0.734 Sum_probs=163.0
Q ss_pred ceEEEEeEEEEEeccc-cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC-
Q 010314 104 ASVVWKDLTVTIKGKR-RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~- 179 (513)
..++++|+++.|.+.. ...+.+|+|+|+++++||+++|+||||||||||+++|+|++ +|.. |+|.++|++...
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~---G~i~~~g~~~~~~ 78 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVS---GEVLINGRPLDKR 78 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCc---eEEEECCEeCchH
Confidence 3589999999995310 01246999999999999999999999999999999999999 8764 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++.+++.+|++||+.+...+ ..|||||||||+|
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~------------------------------------~~LS~G~~qrv~l 122 (194)
T cd03213 79 SFRKIIGYVPQDDILHPTLTVRETLMFAAKL------------------------------------RGLSGGERKRVSI 122 (194)
T ss_pred hhhheEEEccCcccCCCCCcHHHHHHHHHHh------------------------------------ccCCHHHHHHHHH
Confidence 235699999999999999999999653210 0699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|+++|++..++.++||++++|++|++++.|
T Consensus 123 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 123 ALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998779999999998754688899999999999998754
No 228
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=6.3e-41 Score=327.45 Aligned_cols=207 Identities=19% Similarity=0.319 Sum_probs=172.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++||++.|. ++.+++|+||++++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+...
T Consensus 6 ~~i~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~ 77 (225)
T PRK10247 6 PLLQLQNVGYLAG-----DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDISTLKPE 77 (225)
T ss_pred ceEEEeccEEeeC-----CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CeEEECCEEcCcCCHH
Confidence 3689999999984 3469999999999999999999999999999999999998875 999999986532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.++|++|++.+++. ||+||+.+....... ....+.++++++.+++. ...++. +..|||||||||+
T Consensus 78 ~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~------~~~LS~G~~qrv~ 147 (225)
T PRK10247 78 IYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQ---QPDPAIFLDDLERFALPDTILTKN------IAELSGGEKQRIS 147 (225)
T ss_pred HHHhccEEEecccccccc-cHHHHHHhHHhhcCC---ChHHHHHHHHHHHcCCChHHhcCC------cccCCHHHHHHHH
Confidence 12468999999988874 999999875433211 11234578899999995 456654 4599999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEe-CCeEEEEe
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS-NGNTLFFG 330 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~-~G~iv~~G 330 (513)
|||||+.+|+||||||||+|||+.++..+.++|+++.++ |.|||+++|+.. .+ ..||++++|+ ++..+..|
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~ 220 (225)
T PRK10247 148 LIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEA 220 (225)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhh
Confidence 999999999999999999999999999999999999764 899999888874 56 4699999994 55555444
No 229
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8.6e-41 Score=365.25 Aligned_cols=224 Identities=22% Similarity=0.262 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCCC--
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEMP-- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~~-- 180 (513)
.++++|+++.|.+.. ..+.+|+|+||++.+||++||+||||||||||+++|+|+++|. ...+|+|.++|.++...
T Consensus 5 ~l~~~~l~~~~~~~~-~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 5 LLAIENLSVAFRQQQ-TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred eEEEeceEEEecCCC-CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 589999999995211 1246999999999999999999999999999999999999862 01259999999874211
Q ss_pred -------CceEEEEcCCcc--cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh---HHhhhhcCCCCCCCC
Q 010314 181 -------YGSYGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD---YANKLIGGHCYMKGL 248 (513)
Q Consensus 181 -------~~~~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~---~~~~~vg~~~~~~~L 248 (513)
.+.++|++|++. +++.+||.+++.+...........+..++++++++.+||.+ ..++. +.+|
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~------~~~L 157 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDY------PHQL 157 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhC------Cccc
Confidence 136999999974 67778999998765322111111234567899999999975 34554 4599
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (513)
||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++ |.|||+++|+. ..+..+||+|++|++|+++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 89999988886 5788899999999999999
Q ss_pred EEeChHHHH
Q 010314 328 FFGETLACL 336 (513)
Q Consensus 328 ~~G~~~~~~ 336 (513)
+.|++.+++
T Consensus 237 ~~g~~~~~~ 245 (529)
T PRK15134 237 EQNRAATLF 245 (529)
T ss_pred EeCCHHHHh
Confidence 999987764
No 230
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2e-41 Score=333.25 Aligned_cols=216 Identities=23% Similarity=0.336 Sum_probs=173.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++|+++.|.+. .++.+|+|+||++++|++++|+|+||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 1 l~i~~l~~~~~~~--~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 75 (238)
T cd03249 1 IEFKNVSFRYPSR--PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTS---GEILLDGVDIRDLNLRWL 75 (238)
T ss_pred CeEEEEEEecCCC--CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCC---CEEEECCEehhhcCHHHH
Confidence 4689999988531 12469999999999999999999999999999999999998875 9999999864311
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++ .||+||+.+.... .. ...+.+.++..++.++.+.+..+ ...++.||||||||
T Consensus 76 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~---~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 147 (238)
T cd03249 76 RSQIGLVSQEPVLFD-GTIAENIRYGKPD---AT----DEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQR 147 (238)
T ss_pred HhhEEEECCchhhhh-hhHHHHhhccCCC---CC----HHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHH
Confidence 245999999998886 6999999764211 11 12234555656665544433210 23467999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||+|+.+|++|||||||+|||+.++..+++.|++++ +|+|||+++|+.. ++. .||++++|++|++++.|+.+++
T Consensus 148 v~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~ 224 (238)
T cd03249 148 IAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVVEQGTHDEL 224 (238)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999997 7899999998874 565 8999999999999999987766
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
..
T Consensus 225 ~~ 226 (238)
T cd03249 225 MA 226 (238)
T ss_pred hh
Confidence 44
No 231
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=6.1e-41 Score=366.40 Aligned_cols=222 Identities=23% Similarity=0.294 Sum_probs=184.9
Q ss_pred ceEEEEeEEEEEecccc------ccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 010314 104 ASVVWKDLTVTIKGKRR------YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~------~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (513)
..++++|+++.|..... ..+.+|+|+||++++||+++|+||||||||||+|+|+|+++ . +|+|+++|+++
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~---~G~i~~~g~~i 349 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S---QGEIWFDGQPL 349 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C---CcEEEECCEEc
Confidence 35899999999952110 13569999999999999999999999999999999999985 4 49999999764
Q ss_pred CC--------CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCC-CchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCC
Q 010314 178 EM--------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLP-GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYM 245 (513)
Q Consensus 178 ~~--------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~ 245 (513)
.. ..+.++|++|++ .+++.+||.||+.++...... ....+.++++.++++.++|. +..++. +
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~ 423 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY------P 423 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC------C
Confidence 21 124589999996 588889999999886533211 11123346688999999997 466664 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCC
Q 010314 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNG 324 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (513)
..|||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++ |+|||+++|+. ..+..+||++++|++|
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQG 502 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECC
Confidence 599999999999999999999999999999999999999999999999865 89999988876 5788999999999999
Q ss_pred eEEEEeChHHHH
Q 010314 325 NTLFFGETLACL 336 (513)
Q Consensus 325 ~iv~~G~~~~~~ 336 (513)
++++.|++++++
T Consensus 503 ~i~~~~~~~~~~ 514 (529)
T PRK15134 503 EVVEQGDCERVF 514 (529)
T ss_pred EEEEEcCHHHHh
Confidence 999999987764
No 232
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-41 Score=364.59 Aligned_cols=213 Identities=21% Similarity=0.326 Sum_probs=182.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||++.|. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 4 ~l~~~~l~~~~~-----~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~i~~~~~~~ 75 (501)
T PRK11288 4 YLSFDGIGKTFP-----GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA---GSILIDGQEMRFASTTA 75 (501)
T ss_pred eEEEeeeEEEEC-----CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEECCCCCHHH
Confidence 589999999984 3469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcC-C-CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQL-P-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~-~-~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
..+.++|++|++.+++.+||.||+.++..... . ....+..+++.++++.++|.+..++.+ .+|||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qrv 149 (501)
T PRK11288 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL------KYLSIGQRQMV 149 (501)
T ss_pred HHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch------hhCCHHHHHHH
Confidence 12469999999999999999999987532111 1 011233457889999999986666644 49999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|++ .++..+||++++|++|+++..++.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999999999987899999988886 578899999999999999877653
No 233
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=4e-41 Score=328.78 Aligned_cols=202 Identities=24% Similarity=0.270 Sum_probs=169.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (513)
+.++++++.|. .+.+|+|+||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 23 l~~~~~~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~---G~i~~~g~~~~~------ 88 (224)
T cd03220 23 LGILGRKGEVG-----EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDS---GTVTVRGRVSSL------ 88 (224)
T ss_pred hhhhhhhhhcC-----CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEchh------
Confidence 67788888773 4579999999999999999999999999999999999999875 999999986421
Q ss_pred EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
..+...+++.+||+||+.+....... .....++.+.++++.++|.+..++.++ +|||||||||+|||+|+.+
T Consensus 89 -~~~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG~~qrv~laral~~~ 160 (224)
T cd03220 89 -LGLGGGFNPELTGRENIYLNGRLLGL-SRKEIDEKIDEIIEFSELGDFIDLPVK------TYSSGMKARLAFAIATALE 160 (224)
T ss_pred -hcccccCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhhhhCChh------hCCHHHHHHHHHHHHHhcC
Confidence 11223456789999999876543211 112334567889999999888777554 9999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 266 P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|++|||||||+|||+.++..+++.|++++++|+|||+++|+. .++..+||++++|++|++++.|
T Consensus 161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999987789999988886 5788899999999999998765
No 234
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.5e-41 Score=318.55 Aligned_cols=187 Identities=41% Similarity=0.667 Sum_probs=161.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC--CCCCceeEEEECCEeCC-CC
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP--HSARMYGEVFVNGAKSE-MP 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~~~~~G~I~i~G~~~~-~~ 180 (513)
..++++|+++.|.+.. ..+.+|+++||++++|++++|+||||||||||+++|+|+.+ ++ +|+|.++|++.. ..
T Consensus 2 ~~l~~~~l~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~---~G~i~~~g~~~~~~~ 77 (192)
T cd03232 2 SVLTWKNLNYTVPVKG-GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRPLDKNF 77 (192)
T ss_pred cEEEEeeeEEEecCCC-CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCc---ceEEEECCEehHHHh
Confidence 3689999999995311 12469999999999999999999999999999999999863 44 599999998753 22
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.++|++|++.+++.+||+||+.+...+ + .|||||||||+|||
T Consensus 78 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-----------------~-------------------~LSgGe~qrv~la~ 121 (192)
T cd03232 78 QRSTGYVEQQDVHSPNLTVREALRFSALL-----------------R-------------------GLSVEQRKRLTIGV 121 (192)
T ss_pred hhceEEecccCccccCCcHHHHHHHHHHH-----------------h-------------------cCCHHHhHHHHHHH
Confidence 35689999999999999999999763210 0 69999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC-CeEEEEe
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTLFFG 330 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv~~G 330 (513)
||+.+|++|||||||+|||+.++..+++.|+++++.|+|||+++|++..++...||++++|++ |++++.|
T Consensus 122 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999877899999999874357889999999999 9999865
No 235
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-40 Score=322.89 Aligned_cols=201 Identities=20% Similarity=0.281 Sum_probs=174.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CC
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PY 181 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~ 181 (513)
..+.++|+++.|. .+.+++++||.+++||+++|+|+||||||||+++|+|+++|+. |+|.++|++... ..
T Consensus 10 ~~l~~~~l~~~~~-----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~i~~~~~~ 81 (214)
T PRK13543 10 PLLAAHALAFSRN-----EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVES---GQIQIDGKTATRGDRS 81 (214)
T ss_pred ceEEEeeEEEecC-----CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCC---eeEEECCEEccchhhh
Confidence 4689999999884 3469999999999999999999999999999999999999875 999999987532 12
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+|+.||+.+...... . ...+.+.++++.++|.+..++.+ ..|||||||||+|||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~lara 151 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFLCGLHG--R--RAKQMPGSALAIVGLAGYEDTLV------RQLSAGQKKRLALARL 151 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHHHHhcC--C--cHHHHHHHHHHHcCChhhccCCh------hhCCHHHHHHHHHHHH
Confidence 458999999999999999999987643321 1 12345778899999988777754 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
|+.+|+||||||||+|||+.++..+.+.|++++++|.|||+++|+. .++.++||++++|+.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 152 WLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 9999999999999999999999999999999988889999988887 588999999999864
No 236
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-41 Score=330.95 Aligned_cols=215 Identities=26% Similarity=0.344 Sum_probs=170.4
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (513)
++++|+++.|.++ .+.+|+|+||++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (234)
T cd03251 1 VEFKNVTFRYPGD---GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDS---GRILIDGHDVRDYTLASL 74 (234)
T ss_pred CEEEEEEEEeCCC---CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCC---CEEEECCEEhhhCCHHHH
Confidence 4689999998532 1369999999999999999999999999999999999999875 999999986432 1
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhc-----CCCCCCCCCHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG-----GHCYMKGLPCGERRR 255 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg-----~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++ .||+||+.+.... . ....+.+.++..++.+..+.... -+..+..||||||||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~---~----~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qr 146 (234)
T cd03251 75 RRQIGLVSQDVFLFN-DTVAENIAYGRPG---A----TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQR 146 (234)
T ss_pred HhhEEEeCCCCeecc-ccHHHHhhccCCC---C----CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHH
Confidence 246899999998886 6999999764211 0 01123333444444333322110 012456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||+++|+.. ++.. ||++++|++|+++..|+++++
T Consensus 147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~v~~l~~G~i~~~~~~~~~ 223 (234)
T cd03251 147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIEN-ADRIVVLEDGKIVERGTHEEL 223 (234)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHhh-CCEEEEecCCeEeeeCCHHHH
Confidence 9999999999999999999999999999999999999964 889999999874 5655 999999999999999988776
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
..
T Consensus 224 ~~ 225 (234)
T cd03251 224 LA 225 (234)
T ss_pred HH
Confidence 44
No 237
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-41 Score=304.92 Aligned_cols=215 Identities=26% Similarity=0.319 Sum_probs=186.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
+.+.++|+++.| +..++|.|+++..+.||.+.++||||+|||||++.|.=+.-|.+ |+..+.|.....
T Consensus 1 msirv~~in~~y-----g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~s---g~l~ia~~~fd~s~~~ 72 (242)
T COG4161 1 MSIQLNGINCFY-----GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRS---GTLNIAGNHFDFSKTP 72 (242)
T ss_pred CceEEccccccc-----ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCC---CeEEecccccccccCc
Confidence 357899999988 45679999999999999999999999999999999998877764 999998753211
Q ss_pred -------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHH
Q 010314 180 -------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 180 -------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGq 252 (513)
.++.+|+|+|...++|++||.|||..+...-+.....+.+.+..++|+.+.|.+++|+ +|-.|||||
T Consensus 73 ~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr------~plhlsggq 146 (242)
T COG4161 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADR------YPLHLSGGQ 146 (242)
T ss_pred cHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccccccc------Cceecccch
Confidence 1346899999999999999999997664322222224566778899999999999988 566999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
+|||+|||||+.+|++|++||||++|||+-..++.+.|++|+..|.|-++++|.. +.+...+.+|+.|.+|+||+.|+.
T Consensus 147 qqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~vvyme~g~ive~g~a 225 (242)
T COG4161 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDA 225 (242)
T ss_pred hhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhheEeeecCeeEeecch
Confidence 9999999999999999999999999999999999999999999999988888886 577889999999999999999986
Q ss_pred H
Q 010314 333 L 333 (513)
Q Consensus 333 ~ 333 (513)
+
T Consensus 226 ~ 226 (242)
T COG4161 226 S 226 (242)
T ss_pred h
Confidence 5
No 238
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-40 Score=329.45 Aligned_cols=215 Identities=23% Similarity=0.245 Sum_probs=182.0
Q ss_pred ceEEEEeEEEEEeccc---------------cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee
Q 010314 104 ASVVWKDLTVTIKGKR---------------RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG 168 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~---------------~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G 168 (513)
+.+.++||+++|...+ ...+.+|+++||++++|++++|+||||||||||+++|+|+++|+. |
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~---G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTV---G 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCc---e
Confidence 4789999999986421 123469999999999999999999999999999999999999875 9
Q ss_pred EEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCC
Q 010314 169 EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (513)
Q Consensus 169 ~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~L 248 (513)
+|.++|. ++++.|+..+.+.+|+.||+.+....... ...+....++++++.++|.+..++.+ ..|
T Consensus 80 ~I~~~g~--------~~~~~~~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~------~~L 144 (264)
T PRK13546 80 KVDRNGE--------VSVIAISAGLSGQLTGIENIEFKMLCMGF-KRKEIKAMTPKIIEFSELGEFIYQPV------KKY 144 (264)
T ss_pred EEEECCE--------EeEEecccCCCCCCcHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhcCCc------ccC
Confidence 9999985 35677777778889999999775433211 11233445678889999988777654 499
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
||||||||+||+||+.+|+||||||||+|||+.++..+++.|.++++.|+|||+++|+. .++..+||++++|++|+++.
T Consensus 145 S~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 145 SSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHHHcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999987799999988886 57889999999999999999
Q ss_pred EeChHHHHH
Q 010314 329 FGETLACLQ 337 (513)
Q Consensus 329 ~G~~~~~~~ 337 (513)
.|+.+++..
T Consensus 224 ~g~~~~~~~ 232 (264)
T PRK13546 224 YGELDDVLP 232 (264)
T ss_pred eCCHHHHHH
Confidence 999887654
No 239
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=7.9e-41 Score=376.15 Aligned_cols=214 Identities=25% Similarity=0.326 Sum_probs=183.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++++|++. .+.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++ |+|.+||.+...
T Consensus 450 ~~I~~~nvsf~Y~~~---~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~ 523 (686)
T TIGR03797 450 GAIEVDRVTFRYRPD---GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES---GSVFYDGQDLAGLDVQ 523 (686)
T ss_pred ceEEEEEEEEEcCCC---CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CEEEECCEEcCcCCHH
Confidence 369999999999532 3569999999999999999999999999999999999999975 999999988643
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++||+|++.+|+. |++|||.++. + ..++.+.++++..++.+..+.++.|.+. ...||||||
T Consensus 524 ~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~----~----~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQr 594 (686)
T TIGR03797 524 AVRRQLGVVLQNGRLMSG-SIFENIAGGA----P----LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR 594 (686)
T ss_pred HHHhccEEEccCCccCcc-cHHHHHhcCC----C----CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 23579999999999965 9999997631 1 1245688999999999877666544332 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.+.+++++.|+++ ++|+|+++|++. ....||+|++|++|++++.|+.+
T Consensus 595 QRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~G~iv~~G~~~ 669 (686)
T TIGR03797 595 QRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDAGRVVQQGTYD 669 (686)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999886 579999999873 45679999999999999999988
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 670 ~Ll~ 673 (686)
T TIGR03797 670 ELMA 673 (686)
T ss_pred HHHh
Confidence 8654
No 240
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=1.5e-40 Score=330.26 Aligned_cols=202 Identities=25% Similarity=0.400 Sum_probs=173.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.++++||++.|. .+.+|+++||++++||+++|+||||||||||+++|+|+++|++ |+|.++|. ..+
T Consensus 4 ~l~~~~l~~~~~-----~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~~~------~~i 69 (251)
T PRK09544 4 LVSLENVSVSFG-----QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDE---GVIKRNGK------LRI 69 (251)
T ss_pred EEEEeceEEEEC-----CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCc------cCE
Confidence 589999999984 3469999999999999999999999999999999999999875 99999873 359
Q ss_pred EEEcCCcccCCCC--CHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 185 GFVERETTLIGSL--TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 185 ~yv~Q~~~l~~~l--TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
+|++|++.+++.+ |+.+++.+. +. ...+.+.++++.++|.+..++.+ ..|||||||||+|||||
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-----~~---~~~~~~~~~l~~~gl~~~~~~~~------~~LSgGq~qrv~laral 135 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-----PG---TKKEDILPALKRVQAGHLIDAPM------QKLSGGETQRVLLARAL 135 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-----cc---ccHHHHHHHHHHcCChHHHhCCh------hhCCHHHHHHHHHHHHH
Confidence 9999998877753 777776431 11 12345788999999998887754 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+.+|++|||||||+|||+.++..+++.|++++++ |.|||+++|+. +++..+||++++|+ |+++..|+++++.
T Consensus 136 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 136 LNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 9999999999999999999999999999999865 89999988886 57889999999996 4799999887753
No 241
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1e-40 Score=363.92 Aligned_cols=218 Identities=22% Similarity=0.255 Sum_probs=182.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCceeEEEEC----------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVN---------- 173 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~--~~~~~~~G~I~i~---------- 173 (513)
++++|+++.|. .+.+|+|+||.+.+|++++|+||||||||||+++|+|++ +|+ +|+|.++
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKFD-----GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEEC-----CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEecccccccccc
Confidence 46899999984 346999999999999999999999999999999999997 565 4999997
Q ss_pred -------------CEeC--------C-------CCCceEEEEcCC-cccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHH
Q 010314 174 -------------GAKS--------E-------MPYGSYGFVERE-TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED 224 (513)
Q Consensus 174 -------------G~~~--------~-------~~~~~~~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~ 224 (513)
|.++ . ..++.++|++|+ +.+++.+||.||+.+....... ...+..+++.+
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~~~ 151 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGY-EGKEAVGRAVD 151 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 2111 0 012458999997 6788889999999886543211 11234567899
Q ss_pred HHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEE
Q 010314 225 AIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFT 303 (513)
Q Consensus 225 ~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t 303 (513)
+++.+||.+..++.+ .+|||||||||+|||||+.+|+||||||||+|||+.++..++++|+++++ .|+|||++
T Consensus 152 ~l~~~gl~~~~~~~~------~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviiv 225 (520)
T TIGR03269 152 LIEMVQLSHRITHIA------RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT 225 (520)
T ss_pred HHHHcCChhhhhcCc------ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 999999988877754 49999999999999999999999999999999999999999999999975 48999998
Q ss_pred EeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHh
Q 010314 304 INQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (513)
Q Consensus 304 ~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (513)
+|+. ..+.++||++++|++|++++.|++++....+
T Consensus 226 tHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 226 SHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred eCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 8886 5788899999999999999999988776543
No 242
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=9.1e-41 Score=320.85 Aligned_cols=194 Identities=24% Similarity=0.320 Sum_probs=168.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
++++||++.|. .+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|++ |+|.++|.+... ..
T Consensus 1 l~i~~l~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (201)
T cd03231 1 LEADELTCERD-----GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLA---GRVLLNGGPLDFQRDSIA 72 (201)
T ss_pred CEEEEEEEEeC-----CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEecccccHHhh
Confidence 46899999984 3469999999999999999999999999999999999999875 999999977432 12
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+||+||+.+... . ...++++++++.++|.+..++.+ ..||||||||++||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~e~l~~~~~----~---~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~lara 139 (201)
T cd03231 73 RGLLYLGHAPGIKTTLSVLENLRFWHA----D---HSDEQVEEALARVGLNGFEDRPV------AQLSAGQQRRVALARL 139 (201)
T ss_pred hheEEeccccccCCCcCHHHHHHhhcc----c---ccHHHHHHHHHHcCChhhhcCch------hhCCHHHHHHHHHHHH
Confidence 469999999999989999999976421 1 12356789999999988777654 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (513)
|+.+|++|||||||+|||+.++..+++.|+++.++|.|+|+++|++. +....|++++++
T Consensus 140 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 140 LLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 99999999999999999999999999999999877899999999885 677899999887
No 243
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.4e-40 Score=373.86 Aligned_cols=219 Identities=26% Similarity=0.398 Sum_probs=184.8
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (513)
...++|+|+.|+|+.+ .+..+|+|+||.|++|+.+||+|||||||||++++|.+++.|+. |+|+++|.++..
T Consensus 348 ~g~ief~nV~FsYPsR--pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~---G~V~idG~di~~~~~ 422 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSR--PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTS---GEVLIDGEDIRNLNL 422 (1228)
T ss_pred ccceEEEEEEecCCCC--CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---ceEEEcCccchhcch
Confidence 3579999999999864 45689999999999999999999999999999999999999985 999999987543
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGE 252 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGq 252 (513)
.+..+|.|.|+|.|| ..|++||+.|+ .+. ..++.+.++.+..+..++..+++.|.+ ...+|||||
T Consensus 423 ~~lr~~iglV~QePvlF-~~tI~eNI~~G----~~d---at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQ 494 (1228)
T KOG0055|consen 423 KWLRSQIGLVSQEPVLF-ATTIRENIRYG----KPD---ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQ 494 (1228)
T ss_pred HHHHhhcCeeeechhhh-cccHHHHHhcC----CCc---ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHH
Confidence 235799999999888 56999999774 221 334567777777777666655544332 223599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
|||++|||||+.+|+|||||||||+||+.+...|.+.|.++. .|+|.|+++|..+ .+.. +|+|++|++|++|+.|+.
T Consensus 495 KQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tIrn-aD~I~v~~~G~IvE~G~h 571 (1228)
T KOG0055|consen 495 KQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TIRN-ADKIAVMEEGKIVEQGTH 571 (1228)
T ss_pred HHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hhhc-cCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999999876 5778888789874 5655 999999999999999999
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
+|++.
T Consensus 572 ~ELi~ 576 (1228)
T KOG0055|consen 572 DELIA 576 (1228)
T ss_pred HHHHh
Confidence 99875
No 244
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.1e-40 Score=335.09 Aligned_cols=214 Identities=20% Similarity=0.294 Sum_probs=179.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|... ...+|+|+||.|++||+++|+|+||||||||+++|+|+++ . +|+|+++|.++..
T Consensus 2 ~i~~~nls~~~~~~---~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~ 74 (275)
T cd03289 2 QMTVKDLTAKYTEG---GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQK 74 (275)
T ss_pred eEEEEEEEEEeCCC---CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHH
Confidence 47899999999532 2459999999999999999999999999999999999987 4 3999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqrq 254 (513)
.++.++|++|++.+|+. ||++|+.... . ...+.+.++++.+||.+..++++++.. ....|||||||
T Consensus 75 lr~~i~~v~q~~~lf~~-tv~~nl~~~~----~----~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~q 145 (275)
T cd03289 75 WRKAFGVIPQKVFIFSG-TFRKNLDPYG----K----WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQ 145 (275)
T ss_pred HhhhEEEECCCcccchh-hHHHHhhhcc----C----CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 13469999999999975 9999995321 1 122457788999999988887664211 12349999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|++|||||+.+|+||||||||++||+.+...+.+.|+++. .++|||+++|+. ..+. .||+|++|++|+++++|++++
T Consensus 146 rl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~~~~ 222 (275)
T cd03289 146 LMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDSIQK 222 (275)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCCHHH
Confidence 9999999999999999999999999999999999999875 489999988887 4565 599999999999999999998
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
++.
T Consensus 223 l~~ 225 (275)
T cd03289 223 LLN 225 (275)
T ss_pred Hhh
Confidence 764
No 245
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-40 Score=326.21 Aligned_cols=213 Identities=24% Similarity=0.342 Sum_probs=172.4
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (513)
++++|+++.|.+ .+.+|+|+|+.+++|++++|+||||||||||+++|+|+.+|.. |+|.++|.+... .
T Consensus 1 l~~~~l~~~~~~----~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 1 IEFENVTFAYDP----GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSS---GSILIDGQDIREVTLDSL 73 (236)
T ss_pred CEEEEEEEEeCC----CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CEEEECCEEhhhCCHHHH
Confidence 468999998842 2459999999999999999999999999999999999998875 999999986432 1
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++ .||.||+.+... . . ....+.+.++.+++.+..+....+ ...++.||||||||
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~-~--~----~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~r 145 (236)
T cd03253 74 RRAIGVVPQDTVLFN-DTIGYNIRYGRP-D--A----TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQR 145 (236)
T ss_pred HhhEEEECCCChhhc-chHHHHHhhcCC-C--C----CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH
Confidence 246899999998886 699999976421 1 1 112244556666665544433111 12456999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|++|||||||+|||+.++..+++.|+++++ |.|||+++|+.. .+. .||++++|++|++++.|+.++.
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~-~~d~~~~l~~g~i~~~~~~~~~ 222 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TIV-NADKIIVLKDGRIVERGTHEEL 222 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHH-hCCEEEEEECCEEEeeCCHHHH
Confidence 9999999999999999999999999999999999999977 899999888874 564 4999999999999999887765
Q ss_pred H
Q 010314 336 L 336 (513)
Q Consensus 336 ~ 336 (513)
.
T Consensus 223 ~ 223 (236)
T cd03253 223 L 223 (236)
T ss_pred h
Confidence 4
No 246
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.7e-41 Score=352.60 Aligned_cols=214 Identities=22% Similarity=0.386 Sum_probs=187.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|++++|. ..++|++|||++++||++||+|.||||||||+|+|+|.++|++ |+|+++|++....
T Consensus 7 ~ll~~~~i~K~Fg-----gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~---G~I~~~G~~~~~~sp~ 78 (500)
T COG1129 7 PLLELRGISKSFG-----GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS---GEILIDGKPVAFSSPR 78 (500)
T ss_pred ceeeeecceEEcC-----CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCC---ceEEECCEEccCCCHH
Confidence 4689999999994 5689999999999999999999999999999999999999985 9999999875421
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhcCC-C--chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLP-G--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~--~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
...|+.|+|+..|+|++||.||++++.....+ . +.....++..++|+.+++....++.++ .||+||||
T Consensus 79 ~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~------~LsiaqrQ 152 (500)
T COG1129 79 DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG------DLSIAQRQ 152 (500)
T ss_pred HHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh------hCCHHHHH
Confidence 24699999999999999999999876543321 1 113445678899999999633677665 99999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
.|+|||||..+++|||||||||.|+......+++.+++|+++|.+||+++|.. ++++++||||.||++|+++..++.
T Consensus 153 ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 153 MVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL-DEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH-HHHHHhcCEEEEEeCCEEeeeccc
Confidence 99999999999999999999999999999999999999999999999988865 799999999999999999998873
No 247
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-40 Score=334.87 Aligned_cols=223 Identities=23% Similarity=0.308 Sum_probs=179.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~-- 179 (513)
..+.++||++.|. .+.+|+++||++.+||+++|+|+||||||||+++|+|++++. ...+|+|.++|.+...
T Consensus 44 ~~l~i~nl~~~~~-----~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~ 118 (305)
T PRK14264 44 AKLSVEDLDVYYG-----DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118 (305)
T ss_pred ceEEEEEEEEEeC-----CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 3689999999984 346999999999999999999999999999999999998521 0125999999986531
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcC------------CCchhhHHHHHHHHHHHcCChhHHhhhhcCC
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQL------------PGFFCQRKNVVEDAIHAMSLSDYANKLIGGH 242 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~------------~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~ 242 (513)
..+.++|++|++.+++ .||+||+.+...... .......++.+.++++.+++.+...... +
T Consensus 119 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~ 195 (305)
T PRK14264 119 VNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL--D 195 (305)
T ss_pred ccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh--c
Confidence 1246999999998887 499999987643210 0001122456788999998853222221 2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEE-EEE
Q 010314 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI-CLL 321 (513)
Q Consensus 243 ~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v-~vL 321 (513)
.++++|||||||||+|||||+.+|+||||||||+|||+.++..++++|+++++ +.|||+++|+. ..+..+||++ ++|
T Consensus 196 ~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~-~~i~~~~d~i~~~l 273 (305)
T PRK14264 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNM-QQAARISDQTAVFL 273 (305)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCH-HHHHHhcCEEEEEe
Confidence 35679999999999999999999999999999999999999999999999976 48999988887 5788999997 578
Q ss_pred eCCeEEEEeChHHHH
Q 010314 322 SNGNTLFFGETLACL 336 (513)
Q Consensus 322 ~~G~iv~~G~~~~~~ 336 (513)
++|++++.|+++++.
T Consensus 274 ~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 274 TGGELVEYDDTDKIF 288 (305)
T ss_pred cCCEEEEeCCHHHHH
Confidence 999999999987654
No 248
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=8.5e-41 Score=369.24 Aligned_cols=218 Identities=22% Similarity=0.294 Sum_probs=185.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.|++. .+.+|+|+|+++++||.+||+|+||||||||+++|+|+++|+. |+|.+||.+...
T Consensus 340 ~~i~~~~vsf~y~~~---~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~---G~I~i~g~~i~~~~~~ 413 (582)
T PRK11176 340 GDIEFRNVTFTYPGK---EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDE---GEILLDGHDLRDYTLA 413 (582)
T ss_pred CeEEEEEEEEecCCC---CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCC---ceEEECCEEhhhcCHH
Confidence 369999999999532 3469999999999999999999999999999999999999975 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++|++|++.+|+ .|++|||.++. +. ...+++++++++.+++.+..++++.|.+. ...||||||
T Consensus 414 ~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~--~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqr 486 (582)
T PRK11176 414 SLRNQVALVSQNVHLFN-DTIANNIAYAR----TE--QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQR 486 (582)
T ss_pred HHHhhceEEccCceeec-chHHHHHhcCC----CC--CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHH
Confidence 2357999999999996 59999996531 11 12356788899999998876665544332 356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+++|+|||||||||+||+.++..+++.|+++. +++|+|+++|++ ...+.||+|++|++|++++.|+.+
T Consensus 487 QRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~ 563 (582)
T PRK11176 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHA 563 (582)
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999985 478999999987 356779999999999999999988
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 564 ~l~~ 567 (582)
T PRK11176 564 ELLA 567 (582)
T ss_pred HHHh
Confidence 7754
No 249
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.4e-40 Score=368.32 Aligned_cols=215 Identities=20% Similarity=0.288 Sum_probs=186.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.|++ .+.+|+|+|+++++||.+||+|+||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 339 ~~i~~~~v~f~y~~----~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~idg~~i~~~~~~ 411 (592)
T PRK10790 339 GRIDIDNVSFAYRD----DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE---GEIRLDGRPLSSLSHS 411 (592)
T ss_pred CeEEEEEEEEEeCC----CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCC---ceEEECCEEhhhCCHH
Confidence 35999999999953 2469999999999999999999999999999999999999975 999999987542
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++|++|++.+|+. |++|||.++. + ..++++.++++.+|+.+..++++.|.+. ...||||||
T Consensus 412 ~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~----~----~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqr 482 (592)
T PRK10790 412 VLRQGVAMVQQDPVVLAD-TFLANVTLGR----D----ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK 482 (592)
T ss_pred HHHhheEEEccCCccccc-hHHHHHHhCC----C----CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 23679999999999976 9999997742 1 2345688999999999887776654443 356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.+...+.+.|+++.+ ++|+|+++|++. ....||+|++|++|++++.|+.+
T Consensus 483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~ 559 (592)
T PRK10790 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQ 559 (592)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999864 689999999973 45679999999999999999998
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++.+
T Consensus 560 ~L~~ 563 (592)
T PRK10790 560 QLLA 563 (592)
T ss_pred HHHh
Confidence 8754
No 250
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=5.1e-40 Score=325.10 Aligned_cols=216 Identities=20% Similarity=0.246 Sum_probs=174.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCC----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~---- 179 (513)
++++||++.|. .+.+|+|+||.+++|++++|+|+||||||||+++|+|+. +|+ +|+|.++|.+...
T Consensus 2 i~~~nl~~~~~-----~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSVE-----DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEeC-----CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC---ceEEEECCCccccCCHH
Confidence 68999999984 346999999999999999999999999999999999995 465 4999999976421
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHH-hc-C-CC---chhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSAL-LQ-L-PG---FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~-~~-~-~~---~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSG 250 (513)
....++|++|++.+++.+|+.+++.+... +. . .. ......+.++++++.+++. +..++.+. +.|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~LS~ 148 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN-----VGFSG 148 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC-----CCCCH
Confidence 11358999999988888887776543211 11 0 00 0012245678889999995 44444321 37999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhc-CCEEEEEeCCeEEEE
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFF 329 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~~ 329 (513)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++.|+|||+++|++. .+... ||++++|++|++++.
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999877899999888864 66666 899999999999999
Q ss_pred eChHHH
Q 010314 330 GETLAC 335 (513)
Q Consensus 330 G~~~~~ 335 (513)
|+.+.+
T Consensus 228 g~~~~~ 233 (248)
T PRK09580 228 GDFTLV 233 (248)
T ss_pred CCHHHH
Confidence 988754
No 251
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.7e-40 Score=397.18 Aligned_cols=223 Identities=22% Similarity=0.307 Sum_probs=196.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++||++.|.+ ..+.+|+||||.|++||++||+||||||||||+|+|+|+++|++ |+|.++|++...
T Consensus 1936 ~~L~v~nLsK~Y~~---~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pts---G~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257 1936 DILRLNELTKVYSG---TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTS---GDATVAGKSILTNISD 2009 (2272)
T ss_pred ceEEEEEEEEEECC---CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCc---cEEEECCEECcchHHH
Confidence 46999999999952 12569999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.++.+||++|++.+++.+||+|+|.+.+.++... ..+.++.++++++.++|.+++++.++ .|||||||||+||
T Consensus 2010 ~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~-~~~~~~~v~~lLe~lgL~~~~dk~~~------~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2010 VHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVP-AEEIEKVANWSIQSLGLSLYADRLAG------TYSGGNKRKLSTA 2082 (2272)
T ss_pred HhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCHHHhcCChh------hCCHHHHHHHHHH
Confidence 2356999999999999999999998866554211 12345668899999999998888665 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHh
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (513)
+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||+++|+. +++..+||||++|++|+++..|+++++...|
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM-EECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 999999999999999999999999999999999987899999988876 6899999999999999999999999987766
Q ss_pred H
Q 010314 340 S 340 (513)
Q Consensus 340 ~ 340 (513)
.
T Consensus 2162 g 2162 (2272)
T TIGR01257 2162 G 2162 (2272)
T ss_pred C
Confidence 4
No 252
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-41 Score=363.68 Aligned_cols=220 Identities=18% Similarity=0.261 Sum_probs=182.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGAKSEMP-- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~-~~~~~~G~I~i~G~~~~~~-- 180 (513)
..++++||++.|... .++.+|+|+||++++||+++|+||||||||||+|+|+|+++ |++ |+|.++|++....
T Consensus 258 ~~l~~~~l~~~~~~~--~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~---G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 258 VILEVRNLTAWDPVN--PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWE---GEIFIDGKPVKIRNP 332 (506)
T ss_pred ceEEEecCccccccc--cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCC---cEEEECCEECCCCCH
Confidence 368999999988421 12469999999999999999999999999999999999988 454 9999999875321
Q ss_pred ----CceEEEEcCCc---ccCCCCCHHHHHHHHHHhcCC----CchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCC
Q 010314 181 ----YGSYGFVERET---TLIGSLTVREYLYYSALLQLP----GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGL 248 (513)
Q Consensus 181 ----~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~----~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~L 248 (513)
...++|++|++ .+++.+||.||+.+....... .......+.++++++.++|. +..++.+ ..|
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~L 406 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI------ARL 406 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc------ccC
Confidence 23589999985 478889999999875321110 01122345688999999996 4666654 499
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. .++.++||++++|++|+++.
T Consensus 407 SgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~ 485 (506)
T PRK13549 407 SGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKG 485 (506)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999988899999988886 58899999999999999999
Q ss_pred EeChHHH
Q 010314 329 FGETLAC 335 (513)
Q Consensus 329 ~G~~~~~ 335 (513)
.|+++++
T Consensus 486 ~~~~~~~ 492 (506)
T PRK13549 486 DLINHNL 492 (506)
T ss_pred EeccccC
Confidence 9877653
No 253
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.8e-40 Score=322.22 Aligned_cols=206 Identities=19% Similarity=0.245 Sum_probs=169.1
Q ss_pred EEEEeEEEEEeccccc--cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEEC--CE--eCCC
Q 010314 106 VVWKDLTVTIKGKRRY--SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN--GA--KSEM 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~--G~--~~~~ 179 (513)
++++||++.|...+.. .+.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++ |. +...
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDS---GRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEEecCCCccchhh
Confidence 6899999999532111 2469999999999999999999999999999999999999875 999998 42 2211
Q ss_pred ---------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCC
Q 010314 180 ---------PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 ---------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LS 249 (513)
..+.++|++|++.+++.+||.||+.+...... .......+.+.++++.++|.+ ..++. +.+||
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~LS 151 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERG-VPREAARARARELLARLNIPERLWHLP------PATFS 151 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhhhCC------cccCC
Confidence 12458999999999999999999987543221 111233456788999999975 34543 45999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|+. ..+..+||+++.+.
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceeEecC
Confidence 9999999999999999999999999999999999999999999987799999988885 56778999998763
No 254
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-41 Score=361.21 Aligned_cols=219 Identities=23% Similarity=0.359 Sum_probs=183.3
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (513)
...++|+||+|.|+.+ +...+|+|+||+++|||++||+||||+||||+.++|..++.|++ |+|++||.++..
T Consensus 463 ~G~IeF~~VsFaYP~R--p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pts---G~IllDG~~i~~~~~ 537 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTR--PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS---GRILLDGVPISDINH 537 (716)
T ss_pred cceEEEEEeeeecCCC--CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---CeEEECCeehhhcCH
Confidence 3479999999999864 56689999999999999999999999999999999999999985 999999998643
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGE 252 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGq 252 (513)
.++.||+|.|+|.||.. ||+|||.|+.. . ..++.++.+.+..+-.++....+.|+ +...+|||||
T Consensus 538 ~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~----~---~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ 609 (716)
T KOG0058|consen 538 KYLRRKIGLVGQEPVLFSG-SIRENIAYGLD----N---ATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ 609 (716)
T ss_pred HHHHHHeeeeeccceeecc-cHHHHHhcCCC----C---CCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence 24679999999999965 99999988643 1 23345666666665555444333322 2335799999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
|||+||||||+++|.||||||.||+||+++...|-+.|.++.+ ++|||++.|..+ ..+.+|+|+++++|++++.|+-
T Consensus 610 KQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~G~V~E~G~h 686 (716)
T KOG0058|consen 610 KQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDKGRVVEMGTH 686 (716)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcCCeEEecccH
Confidence 9999999999999999999999999999999999999999875 589999788763 4577999999999999999988
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
+|++.
T Consensus 687 ~eLl~ 691 (716)
T KOG0058|consen 687 DELLS 691 (716)
T ss_pred HHHhh
Confidence 88764
No 255
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-40 Score=311.06 Aligned_cols=169 Identities=29% Similarity=0.434 Sum_probs=152.1
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
++++|+++.|. .+.+|+++||++.+||+++|+||||||||||+++|+|+++|.. |+|.++|.+... ..
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (173)
T cd03230 1 IEVRNLSKRYG-----KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS---GEIKVLGKDIKKEPEEVK 72 (173)
T ss_pred CEEEEEEEEEC-----CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEEcccchHhhh
Confidence 46899999884 2369999999999999999999999999999999999998874 999999986532 13
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+|+.||+. |||||||||+||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~~~-------------------------------------------LS~G~~qrv~lara 109 (173)
T cd03230 73 RRIGYLPEEPSLYENLTVRENLK-------------------------------------------LSGGMKQRLALAQA 109 (173)
T ss_pred ccEEEEecCCccccCCcHHHHhh-------------------------------------------cCHHHHHHHHHHHH
Confidence 56999999999999899999872 89999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|+.+|+||||||||+|||+.++..+.+.|++++++|.|+|+++|++ .++..+||++++|++|++
T Consensus 110 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 110 LLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999999999987789999988886 478889999999999974
No 256
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.6e-40 Score=323.25 Aligned_cols=209 Identities=22% Similarity=0.349 Sum_probs=172.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|.+. .+.+|+|+||++++|++++|+||||||||||+++|+|+.+|+. |+|.++|.+...
T Consensus 2 ~l~~~~l~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 75 (221)
T cd03244 2 DIEFKNVSLRYRPN---LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS---GSILIDGVDISKIGLHD 75 (221)
T ss_pred cEEEEEEEEecCCC---CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---CEEEECCEEhHhCCHHH
Confidence 47899999998531 2469999999999999999999999999999999999999875 999999987432
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrq 254 (513)
..+.++|++|++.+++ .||+||+.+.. . ...+.+.++++.+++.+..+++..| ...+..|||||||
T Consensus 76 ~~~~i~~~~q~~~l~~-~tv~enl~~~~----~----~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~q 146 (221)
T cd03244 76 LRSRISIIPQDPVLFS-GTIRSNLDPFG----E----YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQ 146 (221)
T ss_pred HhhhEEEECCCCcccc-chHHHHhCcCC----C----CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHH
Confidence 1356999999998876 59999985421 1 1124567778888887766542111 1256799999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||+++|++. ++. .||++++|++|++++.|+
T Consensus 147 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 147 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HHh-hCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999864 689999888874 565 499999999999998875
No 257
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.9e-40 Score=317.84 Aligned_cols=197 Identities=25% Similarity=0.314 Sum_probs=168.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCc
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYG 182 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~ 182 (513)
.++++|+++.|. .+.+|+|+||.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|.+... ..+
T Consensus 2 ~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVRG-----GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAA---GTIKLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEEeEEEEEC-----CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEeCcchhhHh
Confidence 589999999984 3469999999999999999999999999999999999998875 999999976432 234
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+||.||+.+...... ...+.+.++++.+||.+..++.+ +.||||||||++|||||
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrl~la~al 142 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLG-----GEELDIAAALEAVGLAPLAHLPF------GYLSAGQKRRVALARLL 142 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcC-----CcHHHHHHHHHHcCCHHHHcCCh------hhcCHHHHHHHHHHHHH
Confidence 68999999888889999999977543321 11245789999999987766644 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+. .++.. |+++.+..
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 143 VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCc-hhhcc--CcEEeecC
Confidence 999999999999999999999999999999987799999999987 45654 88887743
No 258
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=3.2e-40 Score=316.10 Aligned_cols=193 Identities=25% Similarity=0.310 Sum_probs=164.4
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
++++|+++.|. .+.+|+|+||.+.+|++++|+||||||||||+++|+|+++|+. |+|.++|.+... ..
T Consensus 1 l~~~~l~~~~~-----~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (198)
T TIGR01189 1 LAARNLACSRG-----ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDS---GEVRWNGTALAEQRDEPH 72 (198)
T ss_pred CEEEEEEEEEC-----CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEEcccchHHhh
Confidence 46899999884 3469999999999999999999999999999999999998875 999999986432 12
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++.+||.||+.+...... ...+.+.++++.++|.+..++.+ ..|||||||||+||||
T Consensus 73 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~la~a 141 (198)
T TIGR01189 73 RNILYLGHLPGLKPELSALENLHFWAAIHG-----GAQRTIEDALAAVGLTGFEDLPA------AQLSAGQQRRLALARL 141 (198)
T ss_pred hheEEeccCcccccCCcHHHHHHHHHHHcC-----CcHHHHHHHHHHcCCHHHhcCCh------hhcCHHHHHHHHHHHH
Confidence 468999999989988999999977543221 11345788999999998877755 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEE
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL 320 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~v 320 (513)
|+.+|++|||||||+|||+.++..+++.|++++++|.|||+++|++.. -.|++++.
T Consensus 142 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 142 WLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999999999999999999998779999999998742 34677764
No 259
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.3e-40 Score=375.66 Aligned_cols=215 Identities=25% Similarity=0.325 Sum_probs=183.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++++|++. .+.+|+|+|+++++||.+||+|+||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 476 ~~I~~~~vsf~y~~~---~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~ 549 (710)
T TIGR03796 476 GYVELRNITFGYSPL---EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS---GEILFDGIPREEIPRE 549 (710)
T ss_pred CeEEEEEEEEecCCC---CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEeHHHCCHH
Confidence 369999999999632 3569999999999999999999999999999999999999975 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++||+|++.+|+ .|++|||.++ .+. ..++.+.++++..++.+..++++.|.+. ...||||||
T Consensus 550 ~lr~~i~~v~Q~~~lf~-gTi~eNi~l~----~~~---~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQr 621 (710)
T TIGR03796 550 VLANSVAMVDQDIFLFE-GTVRDNLTLW----DPT---IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQR 621 (710)
T ss_pred HHHhheeEEecCChhhh-ccHHHHhhCC----CCC---CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHH
Confidence 2467999999999996 5999999653 121 2345688899999998877766554332 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.++..+++.|++ .++|+|+++|++. ....||+|++|++|++++.|+.+
T Consensus 622 QRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~G~i~~~G~~~ 696 (710)
T TIGR03796 622 QRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLERGKVVQRGTHE 696 (710)
T ss_pred HHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999976 4789999999873 45669999999999999999998
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 697 ~Ll~ 700 (710)
T TIGR03796 697 ELWA 700 (710)
T ss_pred HHHH
Confidence 8764
No 260
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-41 Score=327.50 Aligned_cols=193 Identities=26% Similarity=0.387 Sum_probs=171.2
Q ss_pred eeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC---------CCCCceEEEEcCCcccCCCCC
Q 010314 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS---------EMPYGSYGFVERETTLIGSLT 198 (513)
Q Consensus 128 ~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~---------~~~~~~~~yv~Q~~~l~~~lT 198 (513)
+++|.++.-.++||.|+||||||||+|+|+|+.+|+. |.|.+||+.. ...++++|||||+..|||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPde---G~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDE---GRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccc---cEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 4666666658999999999999999999999999985 9999999642 122478999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 010314 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHL 278 (513)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgL 278 (513)
|+.||.|+.+.. .....+++.+.+|+.++++++ |..|||||||||+|+|||++.|++|+||||.+.|
T Consensus 93 VrgNL~YG~~~~-------~~~~fd~iv~lLGI~hLL~R~------P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 93 VRGNLRYGMWKS-------MRAQFDQLVALLGIEHLLDRY------PGTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred Eecchhhhhccc-------chHhHHHHHHHhCcHHHHhhC------CCccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 999999986432 234578899999999999984 5599999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 279 DSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 279 D~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|...+.+++-+|.+|+++ ...|+.++|.. +++.+++|+|++|++|++.++|+.+++..
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 999999999999999976 78899987775 79999999999999999999999998864
No 261
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=5.9e-40 Score=315.04 Aligned_cols=186 Identities=24% Similarity=0.318 Sum_probs=159.0
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCCC---
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~~--- 180 (513)
++++|+++.|. ++.+|+|+||.+++||+++|+|+||||||||+++|+|+. +|+ +|+|.++|.+....
T Consensus 1 l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~---~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVG-----GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT---EGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeC-----CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC---ccEEEECCEECCcCCHH
Confidence 46899999984 246999999999999999999999999999999999994 565 49999999875321
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
...++|++|++.+++.+|+++++ +. .+..||||||||++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l--------------------------------~~------~~~~LS~G~~qrv~ 114 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFL--------------------------------RY------VNEGFSGGEKKRNE 114 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHH--------------------------------hh------ccccCCHHHHHHHH
Confidence 23499999999888888887765 01 11389999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHh-cCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG-LFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~-~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||+|+.+|+||||||||+|||+.++..+++.|++++++++|||+++|++. .+.+ +||++++|++|++++.|+. ++.
T Consensus 115 laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~-~~~ 192 (200)
T cd03217 115 ILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDK-ELA 192 (200)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccH-HHH
Confidence 999999999999999999999999999999999999877899999999874 6666 7999999999999999944 454
Q ss_pred HHh
Q 010314 337 QHF 339 (513)
Q Consensus 337 ~~f 339 (513)
..+
T Consensus 193 ~~~ 195 (200)
T cd03217 193 LEI 195 (200)
T ss_pred hhh
Confidence 444
No 262
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-41 Score=313.62 Aligned_cols=217 Identities=24% Similarity=0.368 Sum_probs=191.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++|++++| +.+.+|+++|+.+++|.+++|+|||||||||||.+++.+++.++ |+|+++|.+....
T Consensus 2 I~i~nv~K~y-----~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~---G~i~i~g~~~~~~~s~~L 73 (252)
T COG4604 2 ITIENVSKSY-----GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS---GEITIDGLELTSTPSKEL 73 (252)
T ss_pred eeehhhhHhh-----CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccC---ceEEEeeeecccCChHHH
Confidence 5788999988 45689999999999999999999999999999999999999875 9999999886432
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhc-CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQ-LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.+.++.+-|+..+...+||+|.+.|+..-. ..+...+.+..++++++.++|.++.++.+. +||||||||.-||
T Consensus 74 Ak~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd------~LSGGQrQRAfIA 147 (252)
T COG4604 74 AKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLD------ELSGGQRQRAFIA 147 (252)
T ss_pred HHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHH------hcccchhhhhhhh
Confidence 245788899999999999999998863211 111114567789999999999999999765 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
+.|+.+.+.++||||.++||...+.++|+.|++++++ |+|||++.|+.. .+..++|+|+-|++|+++..|+++++..
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 9999999999999999999999999999999999976 999999999874 7889999999999999999999998763
No 263
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=4.5e-40 Score=370.48 Aligned_cols=218 Identities=24% Similarity=0.391 Sum_probs=186.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++|+|++ ..+.+|+|+|+++++||.+||+|+||||||||+++|+|+++|+. |+|.+||.+...
T Consensus 462 ~~I~~~~vsf~Y~~---~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~---G~I~idg~~l~~~~~~ 535 (694)
T TIGR03375 462 GEIEFRNVSFAYPG---QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE---GSVLLDGVDIRQIDPA 535 (694)
T ss_pred ceEEEEEEEEEeCC---CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEhhhCCHH
Confidence 36999999999953 23469999999999999999999999999999999999999975 999999987542
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqr 253 (513)
.++.++||+|++.+|+. |++|||.++ .+. ..++++.++++.+++.+..++++.|.+ ....||||||
T Consensus 536 ~lr~~i~~v~Q~~~lf~~-TI~eNi~~~----~~~---~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQr 607 (694)
T TIGR03375 536 DLRRNIGYVPQDPRLFYG-TLRDNIALG----APY---ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQR 607 (694)
T ss_pred HHHhccEEECCChhhhhh-hHHHHHhCC----CCC---CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHH
Confidence 23579999999999975 999999653 121 234668889999999887766654433 2357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.+...+.+.|+++. +++|+|+++|+++ ..+.||+|++|++|++++.|+.+
T Consensus 608 QRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~G~i~e~G~~~ 684 (694)
T TIGR03375 608 QAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKD 684 (694)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeCCEEEeeCCHH
Confidence 99999999999999999999999999999999999999986 4789999999974 45789999999999999999998
Q ss_pred HHHHH
Q 010314 334 ACLQH 338 (513)
Q Consensus 334 ~~~~~ 338 (513)
+++..
T Consensus 685 eLl~~ 689 (694)
T TIGR03375 685 QVLEA 689 (694)
T ss_pred HHHHH
Confidence 87654
No 264
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.6e-40 Score=357.14 Aligned_cols=208 Identities=22% Similarity=0.242 Sum_probs=177.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C---
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P--- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~--- 180 (513)
.++++|+++.|. .+.+|+|+||++++|++++|+||||||||||+|+|+|+++|++ |+|.++|.+... .
T Consensus 3 ~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~---G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 3 SLQISQGTFRLS-----DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLS---GERQSQFSHITRLSFEQ 74 (490)
T ss_pred eEEEEeEEEEcC-----CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---ceEEECCcccccCCHHH
Confidence 489999999984 2459999999999999999999999999999999999999875 999999865321 1
Q ss_pred -CceEEEEcCCccc--C-C-----CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH
Q 010314 181 -YGSYGFVERETTL--I-G-----SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 181 -~~~~~yv~Q~~~l--~-~-----~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG 251 (513)
.+.++|++|++.+ + + .+||+|++.+. ....++++++++.++|.+..++.++ +||||
T Consensus 75 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~~~~~~~~------~LSgG 139 (490)
T PRK10938 75 LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE---------VKDPARCEQLAQQFGITALLDRRFK------YLSTG 139 (490)
T ss_pred HHHHhceeccCcchhhcccchhhccccHHHhcccc---------hhHHHHHHHHHHHcCCHhhhhCCcc------cCCHH
Confidence 2348999998642 1 1 46888877431 1234568899999999888877554 99999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
|||||+||+||+.+|++|||||||+|||+.++..++++|++++++|.|||+++|+. ..+.++||++++|++|+++..|+
T Consensus 140 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~ 218 (490)
T PRK10938 140 ETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF-DEIPDFVQFAGVLADCTLAETGE 218 (490)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999987799999988886 57889999999999999999999
Q ss_pred hHHHH
Q 010314 332 TLACL 336 (513)
Q Consensus 332 ~~~~~ 336 (513)
++++.
T Consensus 219 ~~~~~ 223 (490)
T PRK10938 219 REEIL 223 (490)
T ss_pred HHHHh
Confidence 87653
No 265
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=8.5e-40 Score=391.31 Aligned_cols=222 Identities=25% Similarity=0.315 Sum_probs=194.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||++.|.+ +++.+|+|+|+.+.+||+++|+||||||||||+++|+|+++|++ |+|.++|.++...
T Consensus 927 ~~L~I~nLsK~y~~---~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pts---G~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP---SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTS---GTVLVGGKDIETNLDA 1000 (2272)
T ss_pred ceEEEEeEEEEecC---CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCc---eEEEECCEECcchHHH
Confidence 46999999999942 13569999999999999999999999999999999999999975 9999999875321
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
++.+||++|++.+++.+||+|++.+.+.++... ..+.+++++++++.+||.+.+++.++ +|||||||||+||
T Consensus 1001 ~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~-~~~~~~~v~~lL~~vgL~~~~~~~~~------~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRS-WEEAQLEMEAMLEDTGLHHKRNEEAQ------DLSGGMQRKLSVA 1073 (2272)
T ss_pred HhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCchhhcCChh------hCCHHHHHHHHHH
Confidence 356999999999999999999999876654211 12345678999999999988887554 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHh
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (513)
+||+.+|+||||||||+|||+.++..++++|++++ +|+|||+++|+. +++..+||||++|++|+++..|++..+...|
T Consensus 1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 99999999999999999999999999999999995 589999988886 5888999999999999999999998887655
Q ss_pred H
Q 010314 340 S 340 (513)
Q Consensus 340 ~ 340 (513)
.
T Consensus 1152 g 1152 (2272)
T TIGR01257 1152 G 1152 (2272)
T ss_pred C
Confidence 3
No 266
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-40 Score=360.15 Aligned_cols=212 Identities=18% Similarity=0.272 Sum_probs=178.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|+++.+ ..+|+|+||++++|++++|+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 264 ~~l~~~~l~~~~-------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~---G~I~~~g~~~~~~~~~ 333 (510)
T PRK09700 264 TVFEVRNVTSRD-------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAG---GEIRLNGKDISPRSPL 333 (510)
T ss_pred cEEEEeCccccC-------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CeEEECCEECCCCCHH
Confidence 368999999753 138999999999999999999999999999999999999875 9999999865321
Q ss_pred ---CceEEEEcCC---cccCCCCCHHHHHHHHHHhc---C----CC-chhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCC
Q 010314 181 ---YGSYGFVERE---TTLIGSLTVREYLYYSALLQ---L----PG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYM 245 (513)
Q Consensus 181 ---~~~~~yv~Q~---~~l~~~lTV~E~l~~~~~~~---~----~~-~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~ 245 (513)
.+.++|++|+ ..+++.+||.||+.+..... . .. ......+.++++++.++|. +..++.+
T Consensus 334 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------ 407 (510)
T PRK09700 334 DAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI------ 407 (510)
T ss_pred HHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc------
Confidence 2468999998 46889999999997653211 0 00 0112234578999999996 6667654
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
.+|||||||||+|||+|+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. ..+..+||++++|++|+
T Consensus 408 ~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~ 486 (510)
T PRK09700 408 TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL-PEIITVCDRIAVFCEGR 486 (510)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCE
Confidence 49999999999999999999999999999999999999999999999987899999988886 57889999999999999
Q ss_pred EEEEeCh
Q 010314 326 TLFFGET 332 (513)
Q Consensus 326 iv~~G~~ 332 (513)
+++.++.
T Consensus 487 i~~~~~~ 493 (510)
T PRK09700 487 LTQILTN 493 (510)
T ss_pred EEEEecC
Confidence 9988765
No 267
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=6.4e-40 Score=310.17 Aligned_cols=170 Identities=26% Similarity=0.402 Sum_probs=152.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++|+++.| +|+++||++++|++++|+||||||||||+++|+|+++|+. |+|.++|.+....
T Consensus 4 ~l~~~~l~~~~---------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~ 71 (182)
T cd03215 4 VLEVRGLSVKG---------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPAS---GEITLDGKPVTRRSPRD 71 (182)
T ss_pred EEEEeccEEEe---------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEECCccCHHH
Confidence 58999999875 8999999999999999999999999999999999999875 9999999875321
Q ss_pred --CceEEEEcCCc---ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 --YGSYGFVERET---TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++ .+++.+|++||+.+... ||||||||
T Consensus 72 ~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------LS~G~~qr 112 (182)
T cd03215 72 AIRAGIAYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------LSGGNQQK 112 (182)
T ss_pred HHhCCeEEecCCcccCcccCCCcHHHHHHHHhh---------------------------------------cCHHHHHH
Confidence 24699999984 57888999999965310 89999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|+|||||+.+|+||||||||+|||+.++..+.+.|++++++|.|+|+++|+. .++.++||++++|++|++
T Consensus 113 l~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 113 VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999999999999987789999988886 578899999999999974
No 268
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.9e-40 Score=361.88 Aligned_cols=216 Identities=25% Similarity=0.378 Sum_probs=185.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.|++. .+.+|+|+|+++++|+.+||+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 337 ~~i~~~~v~f~y~~~---~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~---G~I~i~g~~i~~~~~~ 410 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ---PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQ---GEILLNGQPIADYSEA 410 (574)
T ss_pred CeEEEEEEEEECCCC---CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEEhhhCCHH
Confidence 469999999999532 2469999999999999999999999999999999999999975 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++||+|++.+|+. |++||+.++. +. ..++.+.++++.+++.++.++ +.|.+. ...||||||
T Consensus 411 ~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~~---~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqr 481 (574)
T PRK11160 411 ALRQAISVVSQRVHLFSA-TLRDNLLLAA----PN---ASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQ 481 (574)
T ss_pred HHHhheeEEcccchhhcc-cHHHHhhcCC----Cc---cCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHH
Confidence 23569999999999965 9999997642 21 234668899999999988766 544443 467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+||||||||++||+.++..+.+.|+++. +++|+|+++|++. .+ ..||+|++|++|++++.|+.+
T Consensus 482 qRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~-~~-~~~d~i~~l~~G~i~~~g~~~ 558 (574)
T PRK11160 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT-GL-EQFDRICVMDNGQIIEQGTHQ 558 (574)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh-HH-HhCCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999999999986 4889999999984 44 569999999999999999988
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 559 ~l~~ 562 (574)
T PRK11160 559 ELLA 562 (574)
T ss_pred HHHh
Confidence 7654
No 269
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-39 Score=345.41 Aligned_cols=215 Identities=21% Similarity=0.262 Sum_probs=179.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..+.++||++.+.++ ..+.+|+|+||.+++|++++|+||||||||||+++|+|+++|+. |+|.++|.+.
T Consensus 20 ~mL~lknL~~~~~~~--~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~s---GeI~I~G~~~------ 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDG--EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNK---GTVDIKGSAA------ 88 (549)
T ss_pred ceeEEEEEEEecCCC--ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCc---eEEEECCEee------
Confidence 368899999887532 12469999999999999999999999999999999999999875 9999999641
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~ 263 (513)
++.+...+++.+||+||+.+...+... ...+..+.+.++++.++|.+..++.+ +.|||||||||+|||||+
T Consensus 89 --~i~~~~~l~~~lTV~EnL~l~~~~~~~-~~~e~~e~i~elLe~lgL~~~ld~~~------~~LSGGQrQRVaLArAL~ 159 (549)
T PRK13545 89 --LIAISSGLNGQLTGIENIELKGLMMGL-TKEKIKEIIPEIIEFADIGKFIYQPV------KTYSSGMKSRLGFAISVH 159 (549)
T ss_pred --eEEeccccCCCCcHHHHHHhhhhhcCC-CHHHHHHHHHHHHHHcCChhHhhCCc------ccCCHHHHHHHHHHHHHH
Confidence 122234567778999999875432211 11233456788999999998887755 499999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHh
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (513)
.+|+||||||||+|||+.++..+++.|++++++|+|||+++|+. ..+..+||++++|++|++++.|+++++...+
T Consensus 160 ~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 160 INPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 99999999999999999999999999999987799999988886 5788999999999999999999998876543
No 270
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-40 Score=309.32 Aligned_cols=170 Identities=31% Similarity=0.471 Sum_probs=151.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++|+++.|. .+.+++++||++++||+++|+||||||||||+++|+|+++++. |+|.++|.+...
T Consensus 1 i~~~~l~~~~~-----~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 72 (178)
T cd03229 1 LELKNVSKRYG-----QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDS---GSILIDGEDLTDLEDELP 72 (178)
T ss_pred CEEEEEEEEEC-----CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEECCEEccccchhHH
Confidence 46899999884 2469999999999999999999999999999999999999874 999999976432
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++.+++.+|++||+.+. ||||||||++|
T Consensus 73 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~-----------------------------------------lS~G~~qr~~l 111 (178)
T cd03229 73 PLRRRIGMVFQDFALFPHLTVLENIALG-----------------------------------------LSGGQQQRVAL 111 (178)
T ss_pred HHhhcEEEEecCCccCCCCCHHHheeec-----------------------------------------CCHHHHHHHHH
Confidence 125699999999999889999987431 89999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
||||+.+|++|||||||+|||+.++..+++.|++++++ |+|+|+++|++ .++..+||++++|++|+
T Consensus 112 a~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 112 ARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999877 89999988886 57888999999999885
No 271
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=4.4e-40 Score=371.03 Aligned_cols=216 Identities=23% Similarity=0.340 Sum_probs=181.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++++|++. .++.+|+|+|+++++||.+||+||||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 477 ~~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~idg~~i~~~~~~ 551 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR--PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG---GQVLLDGVPLVQYDHH 551 (711)
T ss_pred CeEEEEEEEEECCCC--CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CEEEECCEEHHhcCHH
Confidence 369999999999642 23579999999999999999999999999999999999999975 999999988532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++||+|++.+|. .|++|||.++. +. ..++.+.++++.+++.++.+++..|.+. ...||||||
T Consensus 552 ~lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~~---~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQk 623 (711)
T TIGR00958 552 YLHRQVALVGQEPVLFS-GSVRENIAYGL----TD---TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQK 623 (711)
T ss_pred HHHhhceEEecCccccc-cCHHHHHhcCC----CC---CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHH
Confidence 2357999999999996 59999997642 21 2346688899999998887766544332 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+++|+|||||||||+||+.+...+.+ .. ...++|+|+++|++. ....||+|++|++|++++.|+.+
T Consensus 624 QRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~G~ive~Gt~~ 698 (711)
T TIGR00958 624 QRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHK 698 (711)
T ss_pred HHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEECCEEEEeeCHH
Confidence 99999999999999999999999999999999988 22 235889999999874 45679999999999999999998
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++.+
T Consensus 699 eL~~ 702 (711)
T TIGR00958 699 QLME 702 (711)
T ss_pred HHHh
Confidence 8764
No 272
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-40 Score=343.54 Aligned_cols=216 Identities=25% Similarity=0.371 Sum_probs=186.4
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (513)
+..++|+|+++.|. .++++|+++||+|++||-+||+|+|||||||++|+|.++.. . +|+|++||.++..
T Consensus 349 ~~~I~F~dV~f~y~----~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~ 420 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG----PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSL 420 (591)
T ss_pred CCcEEEEeeEEEeC----CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c---CCcEEECCeeHhhhCh
Confidence 44699999999995 34569999999999999999999999999999999999987 4 4999999987532
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGE 252 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGq 252 (513)
.++.||||||+..||.. ||.+|+.|+. +. ...++|.++.+..++.+...++++|+ .....|||||
T Consensus 421 ~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn----~s---as~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGe 492 (591)
T KOG0057|consen 421 ESLRQSIGVVPQDSVLFND-TILYNIKYGN----PS---ASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGE 492 (591)
T ss_pred HHhhhheeEeCCcccccch-hHHHHhhcCC----CC---cCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccch
Confidence 24579999999999965 9999998753 11 34566888999999998877775542 2446699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
||||+||||++.+|+|+++|||||+||..+..++++.+... ..++|+|++.|.. ....-||+|++|++|++...|+.
T Consensus 493 kQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth 569 (591)
T KOG0057|consen 493 KQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTH 569 (591)
T ss_pred HHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccH
Confidence 99999999999999999999999999999999999999994 4589999999986 45678999999999999999999
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
++++.
T Consensus 570 ~ell~ 574 (591)
T KOG0057|consen 570 SELLA 574 (591)
T ss_pred HHHhh
Confidence 98875
No 273
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=4.3e-40 Score=371.42 Aligned_cols=216 Identities=21% Similarity=0.295 Sum_probs=183.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++|.|+. .+.+|+|+|+++++|+.+||+|+||||||||+++|+|+++|+. |+|++||.+...
T Consensus 472 ~~I~~~~vsf~y~~----~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~---G~I~idg~~i~~~~~~ 544 (708)
T TIGR01193 472 GDIVINDVSYSYGY----GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS---GEILLNGFSLKDIDRH 544 (708)
T ss_pred CcEEEEEEEEEcCC----CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCC---cEEEECCEEHHHcCHH
Confidence 36999999999952 3469999999999999999999999999999999999999975 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqr 253 (513)
.++.++||+|++.+|+. |++|||.++. .+. ..++.+.++++..++.+..+.++.|.+ ....||||||
T Consensus 545 ~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~---~~~---~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQr 617 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFSG-SILENLLLGA---KEN---VSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQK 617 (708)
T ss_pred HHHHheEEEecCceehhH-HHHHHHhccC---CCC---CCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHH
Confidence 23579999999999965 9999997641 111 234568889999999887766554433 2356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.+...+++.|+++ .++|+|+++|++. ....||+|++|++|++++.|+.+
T Consensus 618 QRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i~~~G~~~ 693 (708)
T TIGR01193 618 QRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHD 693 (708)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999985 4789999999874 45789999999999999999988
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 694 ~L~~ 697 (708)
T TIGR01193 694 ELLD 697 (708)
T ss_pred HHHh
Confidence 8754
No 274
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=5.3e-40 Score=361.87 Aligned_cols=216 Identities=28% Similarity=0.413 Sum_probs=183.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++|+|+++.|++ ++++|+|+||++++||.+||+||||||||||+++|+|++.|+. |+|.+||.++..
T Consensus 327 ~~I~f~~vsf~y~~----~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~---G~I~idg~dI~~i~~~ 399 (567)
T COG1132 327 GSIEFENVSFSYPG----KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS---GEILIDGIDIRDISLD 399 (567)
T ss_pred CeEEEEEEEEEcCC----CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CeEEECCEehhhcCHH
Confidence 35999999999952 4579999999999999999999999999999999999999964 999999988643
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqr 253 (513)
.++.++||+|++.+|. .||+||+.++. +. ..++.+.++++..++.++..+++.|.+ ....||||||
T Consensus 400 ~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~----~~---at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 400 SLRKRIGIVSQDPLLFS-GTIRENIALGR----PD---ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred HHHHhccEEcccceeec-ccHHHHHhcCC----CC---CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 2467999999999997 69999997752 21 234567888888887776555443333 3356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+||+||||||+||+.+...+.+.++++. +++|+|+++|+++ .+.. ||+|++|++|++++.|+.+
T Consensus 472 QrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls-ti~~-aD~IiVl~~G~i~e~G~h~ 548 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS-TIKN-ADRIIVLDNGRIVERGTHE 548 (567)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh-HHHh-CCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999887 5678888889874 4555 9999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 549 eLl~ 552 (567)
T COG1132 549 ELLA 552 (567)
T ss_pred HHHH
Confidence 8865
No 275
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=7e-40 Score=319.71 Aligned_cols=195 Identities=30% Similarity=0.439 Sum_probs=163.4
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCC--CCCHHHHHHHHHH
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIG--SLTVREYLYYSAL 208 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~--~lTV~E~l~~~~~ 208 (513)
|.+++||+++|+|+||||||||+++|+|+++|++ |+|.++|++.....+.++|++|++.+++ .+|+.||+.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAK---GTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4678999999999999999999999999999875 9999999865333456999999987643 4799999977532
Q ss_pred hc---CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 010314 209 LQ---LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285 (513)
Q Consensus 209 ~~---~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~ 285 (513)
.. .........+.+.++++.+++.+..++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPV------GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCCh------hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 11 00111123456889999999988777654 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 286 i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+.+.|++++++|.|+|+++|+. .++.++||++++| +|++++.|+++++.
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9999999987799999998887 4788999999999 89999999887653
No 276
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.1e-39 Score=360.74 Aligned_cols=215 Identities=23% Similarity=0.341 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++|+++.|++ .+.+|+|+|+++++|+.++|+|+||||||||+|+|+|+++|.. |+|.+||.+....
T Consensus 334 ~I~~~~vsf~y~~----~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~---G~I~i~g~~i~~~~~~~ 406 (588)
T PRK13657 334 AVEFDDVSFSYDN----SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS---GRILIDGTDIRTVTRAS 406 (588)
T ss_pred eEEEEEEEEEeCC----CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---CEEEECCEEhhhCCHHH
Confidence 6999999999953 2459999999999999999999999999999999999999975 9999999875432
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERR 254 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqrq 254 (513)
++.++|++|++.+|+. |++||+.++. +. ..++.+.++++.+++.+..+++..|.+. ...|||||||
T Consensus 407 ~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~---~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~Q 478 (588)
T PRK13657 407 LRRNIAVVFQDAGLFNR-SIEDNIRVGR----PD---ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQ 478 (588)
T ss_pred HHhheEEEecCcccccc-cHHHHHhcCC----CC---CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHH
Confidence 3579999999999964 9999997631 21 2245678889999988776655433332 3569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|++|||||+.+|+||+||||||+||+.++..+++.|+++. .++|+|+++|++. ..+.||+|++|++|+++..|+.++
T Consensus 479 RialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~ 555 (588)
T PRK13657 479 RLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDE 555 (588)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999875 4789999999973 467899999999999999999877
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
...
T Consensus 556 l~~ 558 (588)
T PRK13657 556 LVA 558 (588)
T ss_pred HHH
Confidence 653
No 277
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.8e-40 Score=321.71 Aligned_cols=207 Identities=23% Similarity=0.296 Sum_probs=167.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.|.++ ....+|+++|+.+++|++++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 10 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~ 84 (226)
T cd03248 10 GIVKFQNVTFAYPTR--PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG---GQVLLDGKPISQYEHK 84 (226)
T ss_pred ceEEEEEEEEEeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC---cEEEECCCchHHcCHH
Confidence 468999999999532 12369999999999999999999999999999999999999875 999999976421
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCch-hh--HHHHHHHHHHHc--CChhHHhhhhcCCCCCCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-CQ--RKNVVEDAIHAM--SLSDYANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~-~~--~~~~v~~~l~~~--~L~~~~~~~vg~~~~~~~LSGGqr 253 (513)
..+.++|++|++.+++ .||+||+.+..... .... .+ ....++++++.+ |+.+..++. +..||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~------~~~LSgG~~ 156 (226)
T cd03248 85 YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC-SFECVKEAAQKAHAHSFISELASGYDTEVGEK------GSQLSGGQK 156 (226)
T ss_pred HHHhhEEEEecccHHHh-hhHHHHhccccCCC-CHHHHHHHHHHcCcHHHHHhccccccchhhcC------CCcCCHHHH
Confidence 1246999999998886 59999997643211 1000 01 112246677777 676665553 459999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++. ++. .||++++|++|++
T Consensus 157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HHH-hCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999875 689999899874 564 5999999999974
No 278
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-39 Score=311.61 Aligned_cols=192 Identities=21% Similarity=0.284 Sum_probs=163.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----C
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----Y 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----~ 181 (513)
+.++|+++.|. .+.+|+++|+++++||+++|+||||||||||+++|+|+.+|+. |+|+++|.+.... .
T Consensus 2 l~~~~l~~~~~-----~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 2 LDVIELDFDYH-----DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEK---GEILFERQSIKKDLCTYQ 73 (200)
T ss_pred EEEEEEEEEeC-----CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eeEEECCCccccCHHHHH
Confidence 68999999984 3469999999999999999999999999999999999999875 9999999764321 2
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|+..+++.+||+||+.+.... .. ....+.++++.+++.+..++.+ ..||||||||++||||
T Consensus 74 ~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~~rv~lara 141 (200)
T PRK13540 74 KQLCFVGHRSGINPYLTLRENCLYDIHF--SP----GAVGITELCRLFSLEHLIDYPC------GLLSSGQKRQVALLRL 141 (200)
T ss_pred hheEEeccccccCcCCCHHHHHHHHHhc--Cc----chHHHHHHHHHcCCchhhhCCh------hhcCHHHHHHHHHHHH
Confidence 4689999999888899999999875421 11 1246789999999987766654 4899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEE
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (513)
|+.+|++|||||||+|||+.++..+.+.|+++++.|.|||+++|++. ....||..+
T Consensus 142 l~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~~ 197 (200)
T PRK13540 142 WMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYEE 197 (200)
T ss_pred HhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchhh
Confidence 99999999999999999999999999999999777999999999863 345577544
No 279
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.5e-39 Score=312.79 Aligned_cols=198 Identities=25% Similarity=0.340 Sum_probs=159.7
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (513)
++++||++.|.++....+.+|+++||++++|++++|+||||||||||+++|+|+.+|+. |+|.++| .++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~---G~i~~~g--------~i~ 69 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLS---GSVSVPG--------SIA 69 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCC---CeEEEcC--------EEE
Confidence 46899999985321001369999999999999999999999999999999999999875 9999998 589
Q ss_pred EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHHHHHHHH
Q 010314 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrqRv~IAr 260 (513)
|++|++.++ ..|++||+.+... . ..+.+.++++.+++.+..+....| ...+..||||||||++|||
T Consensus 70 ~~~q~~~l~-~~t~~enl~~~~~--~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~lar 140 (204)
T cd03250 70 YVSQEPWIQ-NGTIRENILFGKP--F------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLAR 140 (204)
T ss_pred EEecCchhc-cCcHHHHhccCCC--c------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHH
Confidence 999999888 4699999976321 1 112345566677776554433211 1245789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
+|+.+|+++||||||+|||+.++..+++ +++.+.+.|.|||+++|++ ..+.. ||++++|++|+
T Consensus 141 al~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~-~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 141 AVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQL-QLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCH-HHHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999998 5676766689999999987 45666 99999999985
No 280
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.5e-39 Score=356.61 Aligned_cols=217 Identities=25% Similarity=0.371 Sum_probs=181.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++++|++. .+.+|+|+|+++++|+.++|+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 315 ~~i~~~~v~~~y~~~---~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~i~~~~~~ 388 (544)
T TIGR01842 315 GHLSVENVTIVPPGG---KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTS---GSVRLDGADLKQWDRE 388 (544)
T ss_pred CeEEEEEEEEEcCCC---CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECCEehhhCCHH
Confidence 369999999999531 3469999999999999999999999999999999999999875 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqr 253 (513)
.++.++|++|++.+|+. |++||+.+.. +. ..++.+.++++..++.+..++++.|.+ ....||||||
T Consensus 389 ~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~~---~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~ 460 (544)
T TIGR01842 389 TFGKHIGYLPQDVELFPG-TVAENIARFG----EN---ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQR 460 (544)
T ss_pred HHhhheEEecCCcccccc-cHHHHHhccC----CC---CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHH
Confidence 23579999999999976 9999996421 11 123456677888887766655443222 3467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++...|+|+|+++|+.. ..+.||+|++|++|++++.|+.+
T Consensus 461 qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~ 538 (544)
T TIGR01842 461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERD 538 (544)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHH
Confidence 9999999999999999999999999999999999999998766899999999974 45789999999999999999987
Q ss_pred HHH
Q 010314 334 ACL 336 (513)
Q Consensus 334 ~~~ 336 (513)
++.
T Consensus 539 ~l~ 541 (544)
T TIGR01842 539 EVL 541 (544)
T ss_pred HHh
Confidence 764
No 281
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-40 Score=344.77 Aligned_cols=216 Identities=26% Similarity=0.358 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|++|+|++. ..++|+|+||++++||.+||+|+||||||||+++|+|.++|++ |+|.++|.++..
T Consensus 336 ~l~~~~vsF~y~~~---~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~---G~i~~~g~~~~~l~~~~ 409 (573)
T COG4987 336 ALELRNVSFTYPGQ---QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ---GSITLNGVEIASLDEQA 409 (573)
T ss_pred eeeeccceeecCCC---ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCC---CeeeECCcChhhCChhh
Confidence 79999999999753 3469999999999999999999999999999999999999985 999999977532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrq 254 (513)
.++.++++.|..++|.. |+++||.++. + ...++.+.++++.+||+++....+.| .+..+.|||||||
T Consensus 410 ~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~----~---~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r 481 (573)
T COG4987 410 LRETISVLTQRVHLFSG-TLRDNLRLAN----P---DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR 481 (573)
T ss_pred HHHHHhhhccchHHHHH-HHHHHHhhcC----C---CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence 23468999999999965 9999996642 2 23567789999999999876554321 2344789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|++|||+|+++.++++|||||.|||+.+..+|+++|.+-. +|+|+|++|||.. -.+.||+|++|++|++++.|...+
T Consensus 482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~--~le~~drIivl~~Gkiie~G~~~~ 558 (573)
T COG4987 482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEGTHAE 558 (573)
T ss_pred HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccc--cHhhcCEEEEEECCeeeecCCHHh
Confidence 9999999999999999999999999999999999998865 4899999999975 357899999999999999999988
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
++.
T Consensus 559 Ll~ 561 (573)
T COG4987 559 LLA 561 (573)
T ss_pred hhc
Confidence 764
No 282
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.7e-40 Score=355.04 Aligned_cols=218 Identities=21% Similarity=0.271 Sum_probs=180.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCceeEEEECCEeCCCC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-SARMYGEVFVNGAKSEMP-- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~-~~~~~G~I~i~G~~~~~~-- 180 (513)
..++++|+++.|... ..+.+|+|+||++++||+++|+||||||||||+++|+|+++| . +|+|.++|++....
T Consensus 256 ~~l~~~~l~~~~~~~--~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 256 VILEARNLTCWDVIN--PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF---EGNVFINGKPVDIRNP 330 (500)
T ss_pred ceEEEeCCccccccc--ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC---CeEEEECCEECCCCCH
Confidence 468999999877311 124699999999999999999999999999999999999985 5 49999999875321
Q ss_pred ----CceEEEEcCCc---ccCCCCCHHHHHHHHHH--hcC-CC-chhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCC
Q 010314 181 ----YGSYGFVERET---TLIGSLTVREYLYYSAL--LQL-PG-FFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGL 248 (513)
Q Consensus 181 ----~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~--~~~-~~-~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~L 248 (513)
.+.++|++|+. .+++.+||+||+.+... ... .. .....++.++++++.++|.+ ..++.+ ..|
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~L 404 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI------GRL 404 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc------ccC
Confidence 24689999995 58899999999977532 110 00 11223456889999999963 456644 499
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. .++.++||++++|++|+++.
T Consensus 405 SgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 405 SGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999988899999988886 58899999999999999998
Q ss_pred EeChH
Q 010314 329 FGETL 333 (513)
Q Consensus 329 ~G~~~ 333 (513)
.++..
T Consensus 484 ~~~~~ 488 (500)
T TIGR02633 484 DFVNH 488 (500)
T ss_pred EEccc
Confidence 77543
No 283
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.1e-39 Score=320.88 Aligned_cols=216 Identities=19% Similarity=0.248 Sum_probs=175.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.|... .+.+|+++||.+++||+++|+|+||||||||+++|+|+++|.. |+|.++|.+...
T Consensus 18 ~~i~~~~l~~~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~i~g~~i~~~~~~ 91 (257)
T cd03288 18 GEIKIHDLCVRYENN---LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFD---GKIVIDGIDISKLPLH 91 (257)
T ss_pred ceEEEEEEEEEeCCC---CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCC---CeEEECCEEhhhCCHH
Confidence 469999999998531 2469999999999999999999999999999999999998875 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqr 253 (513)
..+.++|++|++.+++ .|++||+.... . .....+.++++.+++.+..+..+.| ...+..||||||
T Consensus 92 ~~~~~i~~v~q~~~l~~-~tv~~nl~~~~-----~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~ 162 (257)
T cd03288 92 TLRSRLSIILQDPILFS-GSIRFNLDPEC-----K---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQR 162 (257)
T ss_pred HHhhhEEEECCCCcccc-cHHHHhcCcCC-----C---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHH
Confidence 1346899999998886 49999984310 0 0123355666666776655544311 124568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|++|||||||+|||+.++..+++.|+++. ++.|||+++|++. .+.. ||++++|++|+++..|+++
T Consensus 163 qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~-~~~~-~dri~~l~~G~i~~~g~~~ 239 (257)
T cd03288 163 QLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVS-TILD-ADLVLVLSRGILVECDTPE 239 (257)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChH-HHHh-CCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999975 4899999999875 5554 9999999999999999987
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 240 ~~~~ 243 (257)
T cd03288 240 NLLA 243 (257)
T ss_pred HHHh
Confidence 7643
No 284
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-39 Score=318.38 Aligned_cols=191 Identities=26% Similarity=0.333 Sum_probs=167.4
Q ss_pred ceEEEEeEEEEEeccc--cc--cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC
Q 010314 104 ASVVWKDLTVTIKGKR--RY--SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~--~~--~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~ 179 (513)
+.++++||++.|..+. .. ...+++||||.+++||+++|+|+||||||||-|+|.|+++|++ |+|+++|++...
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~---G~i~f~g~~i~~ 79 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTS---GEILFEGKDITK 79 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCC---ceEEEcCcchhh
Confidence 4689999999997532 11 2479999999999999999999999999999999999999985 999999986422
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.. ..+..+++.++|+.+||.. .+++ ||++||||||||++|
T Consensus 80 ~~---------------------------------~~~~~~~v~elL~~Vgl~~~~~~r------yPhelSGGQrQRi~I 120 (268)
T COG4608 80 LS---------------------------------KEERRERVLELLEKVGLPEEFLYR------YPHELSGGQRQRIGI 120 (268)
T ss_pred cc---------------------------------hhHHHHHHHHHHHHhCCCHHHhhc------CCcccCchhhhhHHH
Confidence 11 1245577999999999864 5555 788999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||||+.+|+++++|||+|+||...+.+++++|+++.++ |.|.++++|+. ..+..+||||.+|+.|++|+.|+.++++.
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 99999999999999999999999999999999999865 99999988886 58999999999999999999999998764
No 285
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.8e-38 Score=354.15 Aligned_cols=218 Identities=23% Similarity=0.256 Sum_probs=186.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++|+++.|.... ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|+. |+|.++|++....
T Consensus 4 ~l~~~nl~~~y~~~~-~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~---G~i~~~g~~i~~~~~~~ 79 (648)
T PRK10535 4 LLELKDIRRSYPSGE-EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS---GTYRVAGQDVATLDADA 79 (648)
T ss_pred EEEEeeEEEEeCCCC-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---eEEEECCEEcCcCCHHH
Confidence 589999999995321 23469999999999999999999999999999999999999875 9999999875321
Q ss_pred -----CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++.+|+.||+.+...... ....+.++++.++++.+||.+..++.+ ..|||||+||
T Consensus 80 ~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~l~~lgl~~~~~~~~------~~LS~Gq~qr 152 (648)
T PRK10535 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAG-LERKQRLLRAQELLQRLGLEDRVEYQP------SQLSGGQQQR 152 (648)
T ss_pred HHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCChhhhcCCc------ccCCHHHHHH
Confidence 2468999999999999999999987643321 111344567889999999998877755 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
++|||||+.+|++|||||||+|||+.++..+.++|++++++|+|+|+++|+.. .+ ..||++++|++|++++.|++++.
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-VA-AQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HH-HhCCEEEEEECCEEEeecCcccc
Confidence 99999999999999999999999999999999999999877999999988864 44 57999999999999999987653
No 286
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.5e-39 Score=305.25 Aligned_cols=168 Identities=28% Similarity=0.456 Sum_probs=148.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (513)
++++|+++.|.+. .+.+++++|+.+++||+++|+||||||||||+++|+|+++|+. |+|.++|.+... .
T Consensus 1 i~~~~l~~~~~~~---~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (173)
T cd03246 1 LEVENVSFRYPGA---EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTS---GRVRLDGADISQWDPNEL 74 (173)
T ss_pred CEEEEEEEEcCCC---CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECCEEcccCCHHHH
Confidence 4689999988531 2459999999999999999999999999999999999999875 999999987532 1
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.++|++|++.+++. ||+||+ ||||||||++|||
T Consensus 75 ~~~i~~~~q~~~~~~~-tv~~~l--------------------------------------------LS~G~~qrv~la~ 109 (173)
T cd03246 75 GDHVGYLPQDDELFSG-SIAENI--------------------------------------------LSGGQRQRLGLAR 109 (173)
T ss_pred HhheEEECCCCccccC-cHHHHC--------------------------------------------cCHHHHHHHHHHH
Confidence 3568999999988874 998876 8999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
||+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|+.. .+ ..||++++|++|++
T Consensus 110 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 110 ALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999877999999999874 55 58999999999974
No 287
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.2e-39 Score=312.36 Aligned_cols=198 Identities=22% Similarity=0.308 Sum_probs=163.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.|... .+.+|+|+|+.+++|++++|+|+||||||||+++|+|+++|.. |+|.++|.+...
T Consensus 5 ~~l~~~~l~~~~~~~---~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~---G~i~~~g~~~~~~~~~ 78 (207)
T cd03369 5 GEIEVENLSVRYAPD---LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE---GKIEIDGIDISTIPLE 78 (207)
T ss_pred CeEEEEEEEEEeCCC---CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CeEEECCEEhHHCCHH
Confidence 368999999998531 2369999999999999999999999999999999999998875 999999987421
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+.++|++|++.+++ .||+||+.+.. .. ..+.+.+.++ .++ .+..|||||+|||+|
T Consensus 79 ~~~~~i~~v~q~~~~~~-~tv~~~l~~~~-----~~---~~~~~~~~l~-------~~~------~~~~LS~G~~qrv~l 136 (207)
T cd03369 79 DLRSSLTIIPQDPTLFS-GTIRSNLDPFD-----EY---SDEEIYGALR-------VSE------GGLNLSQGQRQLLCL 136 (207)
T ss_pred HHHhhEEEEecCCcccC-ccHHHHhcccC-----CC---CHHHHHHHhh-------ccC------CCCcCCHHHHHHHHH
Confidence 1346999999998887 59999995421 11 1122333333 122 456999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
||+|+.+|++|||||||+|||+.++..++++|+++. +|.|+|+++|+.. .+.. ||++++|++|+++..|++
T Consensus 137 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 137 ARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 999999999999999999999999999999999985 4899999888874 5654 999999999999988763
No 288
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-39 Score=328.06 Aligned_cols=230 Identities=23% Similarity=0.274 Sum_probs=197.6
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCceeEEEECCEeCCC-
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS--ARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~--~~~~G~I~i~G~~~~~- 179 (513)
...|.++||++.|.... +...++++|||.+++||.+||+|+||||||-..+.++|+++.. ...+|+|.++|.+.-.
T Consensus 4 ~~lL~v~nLsV~f~~~~-~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 4 MPLLSIRNLSVAFHQEG-GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CcceeeeccEEEEecCC-cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 35789999999996432 4567999999999999999999999999999999999999863 2357999999987311
Q ss_pred --------CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCC
Q 010314 180 --------PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 --------~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LS 249 (513)
...+|+++||++ .|.|-.|+...+.....++......+.++++.++|+.+|+.+-..++ +.||++||
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl---~~yPHeLS 159 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRL---DAYPHELS 159 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhh---hhCCcccC
Confidence 124699999997 68888999999887766654433356678899999999998766654 45999999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
|||||||.||+||+++|++||.||||++||...+.+|+++|++|.++ |..++++||+. ..+.+++|||+||.+|++|+
T Consensus 160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE 238 (534)
T COG4172 160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVE 238 (534)
T ss_pred cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEee
Confidence 99999999999999999999999999999999999999999999865 99999988876 58999999999999999999
Q ss_pred EeChHHHHH
Q 010314 329 FGETLACLQ 337 (513)
Q Consensus 329 ~G~~~~~~~ 337 (513)
.|.++.++.
T Consensus 239 ~~~t~~lF~ 247 (534)
T COG4172 239 TGTTETLFA 247 (534)
T ss_pred cCcHHHHhh
Confidence 999988763
No 289
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.7e-39 Score=357.98 Aligned_cols=218 Identities=24% Similarity=0.341 Sum_probs=184.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++++|++. .+.+|+|+|+.+++||.++|+|+||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 329 ~~i~~~~v~f~y~~~---~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~---G~I~i~g~~i~~~~~~ 402 (571)
T TIGR02203 329 GDVEFRNVTFRYPGR---DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDS---GQILLDGHDLADYTLA 402 (571)
T ss_pred CeEEEEEEEEEcCCC---CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CeEEECCEeHHhcCHH
Confidence 369999999999532 2469999999999999999999999999999999999999975 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++|++|++.+|+. |++|||.++. +. +..++++.++++.+|+.+..++++.|.+. ...||||||
T Consensus 403 ~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~--~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqr 475 (571)
T TIGR02203 403 SLRRQVALVSQDVVLFND-TIANNIAYGR----TE--QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQR 475 (571)
T ss_pred HHHhhceEEccCcccccc-cHHHHHhcCC----CC--CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHH
Confidence 13569999999999865 9999996531 11 12346688999999998877665443322 356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+||+||||||+||+.++..+++.|+++. .++|+|+++|++ .....||+|++|++|+++..|+.+
T Consensus 476 QRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~ 552 (571)
T TIGR02203 476 QRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHN 552 (571)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHH
Confidence 99999999999999999999999999999999999999885 478999999987 457889999999999999999988
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+..+
T Consensus 553 ~l~~ 556 (571)
T TIGR02203 553 ELLA 556 (571)
T ss_pred HHHH
Confidence 8653
No 290
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2e-39 Score=308.48 Aligned_cols=174 Identities=28% Similarity=0.397 Sum_probs=148.3
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------CCceEEEEcCCcc--c
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-------PYGSYGFVERETT--L 193 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-------~~~~~~yv~Q~~~--l 193 (513)
+.+|+++||++.+||+++|+||||||||||+++|+|+++|+. |+|.++|.+... ..+.++|++|++. +
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQS---GAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 469999999999999999999999999999999999999875 999999987531 1246899999973 4
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 010314 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDE 273 (513)
Q Consensus 194 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDE 273 (513)
+ ..||+||+.+...... ....+..+++.++++.++|.+..++.+ ..|||||||||+|||||+.+|+||||||
T Consensus 82 ~-~~tv~~nl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 F-AADVDQDVAFGPLNLG-LSEAEVERRVREALTAVGASGLRERPT------HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred c-cccHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCchhhhhCCh------hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 5 4799999987643221 111233456889999999988777754 4999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCC
Q 010314 274 PLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (513)
Q Consensus 274 PTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (513)
||+|||+.++..+.++|++++++|+|||+++|++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecc
Confidence 9999999999999999999987799999999986
No 291
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.6e-39 Score=306.20 Aligned_cols=174 Identities=23% Similarity=0.392 Sum_probs=151.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----CC
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----PY 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----~~ 181 (513)
++++|+++.|.++ .+.+++|+||++++||+++|+||||||||||+++|+|+.+|.. |+|.++|.+... ..
T Consensus 1 i~~~~~~~~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (178)
T cd03247 1 LSINNVSFSYPEQ---EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ---GEITLDGVPVSDLEKALS 74 (178)
T ss_pred CEEEEEEEEeCCC---CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CEEEECCEEHHHHHHHHH
Confidence 4689999998532 1359999999999999999999999999999999999998875 999999986421 13
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++|++.+++ .|++||+ + ..||||||||++||||
T Consensus 75 ~~i~~~~q~~~~~~-~tv~~~i-----------------------------------~------~~LS~G~~qrv~lara 112 (178)
T cd03247 75 SLISVLNQRPYLFD-TTLRNNL-----------------------------------G------RRFSGGERQRLALARI 112 (178)
T ss_pred hhEEEEccCCeeec-ccHHHhh-----------------------------------c------ccCCHHHHHHHHHHHH
Confidence 46899999998886 6998876 2 3899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|+.+|++|||||||+|||+.++..+++.|+++. ++.|||+++|++. ++ ..||++++|++|++++.|
T Consensus 113 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 113 LLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999985 5889999898874 55 469999999999998754
No 292
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=354.30 Aligned_cols=211 Identities=19% Similarity=0.268 Sum_probs=177.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.+.++|+++. .+++|+||.+++||+++|+||||||||||+++|+|+++|++ |+|.++|++....
T Consensus 257 ~l~~~~~~~~---------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~---G~i~~~g~~~~~~~~~~ 324 (501)
T PRK11288 257 RLRLDGLKGP---------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTA---GQVYLDGKPIDIRSPRD 324 (501)
T ss_pred EEEEeccccC---------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCC---ceEEECCEECCCCCHHH
Confidence 5788888631 48999999999999999999999999999999999998875 9999999865321
Q ss_pred --CceEEEEcCCc---ccCCCCCHHHHHHHHHHhcC-C-C---chhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCC
Q 010314 181 --YGSYGFVERET---TLIGSLTVREYLYYSALLQL-P-G---FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (513)
Q Consensus 181 --~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~-~-~---~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LS 249 (513)
...++|++|++ .+++.+|+.||+.+...... . . .....++.+.++++.+++. +..++.+ ..||
T Consensus 325 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LS 398 (501)
T PRK11288 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI------MNLS 398 (501)
T ss_pred HHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc------ccCC
Confidence 24689999986 48889999999976432110 0 0 1112235678999999994 5666654 4999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
|||||||+|||+|+.+|+||||||||+|||+.++..++++|+++++.|.|||+++|+. .++.++||++++|++|++++.
T Consensus 399 gGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~ 477 (501)
T PRK11288 399 GGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGE 477 (501)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999988899999988886 589999999999999999999
Q ss_pred eChHH
Q 010314 330 GETLA 334 (513)
Q Consensus 330 G~~~~ 334 (513)
|++++
T Consensus 478 ~~~~~ 482 (501)
T PRK11288 478 LAREQ 482 (501)
T ss_pred Ecccc
Confidence 98765
No 293
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=352.72 Aligned_cols=212 Identities=21% Similarity=0.310 Sum_probs=178.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..+.++|+++ .+|+|+||.+++||+++|+||||||||||+++|+|+++|++ |+|.++|++....
T Consensus 256 ~~l~~~~l~~----------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~---G~I~~~g~~i~~~~~~ 322 (501)
T PRK10762 256 VRLKVDNLSG----------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTS---GYVTLDGHEVVTRSPQ 322 (501)
T ss_pred cEEEEeCccc----------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCc---eEEEECCEECCCCCHH
Confidence 3578888873 26999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CceEEEEcCCc---ccCCCCCHHHHHHHHHHhcC----C-CchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCC
Q 010314 181 ---YGSYGFVERET---TLIGSLTVREYLYYSALLQL----P-GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGL 248 (513)
Q Consensus 181 ---~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~----~-~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~L 248 (513)
++.++|++|++ .+++.+||.||+.+...... . ....+..+.++++++.++|. +..++.+ ..|
T Consensus 323 ~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~L 396 (501)
T PRK10762 323 DGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI------GLL 396 (501)
T ss_pred HHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch------hhC
Confidence 23599999995 57889999999987532110 0 01122345688999999995 5666654 499
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
||||||||+|||||+.+|+||||||||+|||+.++..+.++|++++++|.|||+++|+. .++..+||++++|++|+++.
T Consensus 397 SgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 397 SGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEM-PEVLGMSDRILVMHEGRISG 475 (501)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999987899999988886 58899999999999999999
Q ss_pred EeChHHH
Q 010314 329 FGETLAC 335 (513)
Q Consensus 329 ~G~~~~~ 335 (513)
.|++.++
T Consensus 476 ~~~~~~~ 482 (501)
T PRK10762 476 EFTREQA 482 (501)
T ss_pred EeccccC
Confidence 9887654
No 294
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.4e-39 Score=305.69 Aligned_cols=174 Identities=30% Similarity=0.483 Sum_probs=148.5
Q ss_pred EEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----C
Q 010314 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----Y 181 (513)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~ 181 (513)
+++|+++.|. .+.+|+++||.+++|++++|+||||||||||+++|+|+++|+. |+|.++|.+.... .
T Consensus 1 ~~~~l~~~~~-----~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYG-----GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS---GEILLDGKDLASLSPKELA 72 (180)
T ss_pred CeeEEEEEEC-----CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCcCCHHHHH
Confidence 3689999884 2469999999999999999999999999999999999999875 9999999764321 0
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.++|++| +++.++|.+..++. +..||||||||++||||
T Consensus 73 ~~i~~~~q-----------------------------------~l~~~gl~~~~~~~------~~~LS~G~~qrl~lara 111 (180)
T cd03214 73 RKIAYVPQ-----------------------------------ALELLGLAHLADRP------FNELSGGERQRVLLARA 111 (180)
T ss_pred HHHhHHHH-----------------------------------HHHHcCCHhHhcCC------cccCCHHHHHHHHHHHH
Confidence 12333333 67888888776664 45999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|+.+|++|||||||+|||+.++..+.+.|++++++ +.|+|+++|+. .++.++||++++|++|++++.|
T Consensus 112 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 112 LAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999876 88999988887 4778999999999999998653
No 295
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=5.4e-39 Score=354.42 Aligned_cols=217 Identities=22% Similarity=0.346 Sum_probs=183.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|+++.|+.. ..+.+|+|+|++++|||.++|+|+||||||||+|+|+|+++|.. |+|.+||.+....
T Consensus 336 ~~i~~~~v~f~y~~~--~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~---G~I~i~g~~i~~~~~~ 410 (576)
T TIGR02204 336 GEIEFEQVNFAYPAR--PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQS---GRILLDGVDLRQLDPA 410 (576)
T ss_pred ceEEEEEEEEECCCC--CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCC---CEEEECCEEHHhcCHH
Confidence 369999999999632 12569999999999999999999999999999999999999975 9999999875321
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqr 253 (513)
++.++|++|++.+|+. |++|||.++ .+. ..++.+.++++.+++.+..++...|.+ ....||||||
T Consensus 411 ~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~----~~~---~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~ 482 (576)
T TIGR02204 411 ELRARMALVPQDPVLFAA-SVMENIRYG----RPD---ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQR 482 (576)
T ss_pred HHHHhceEEccCCccccc-cHHHHHhcC----CCC---CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHH
Confidence 2469999999999965 999999653 121 124568889999999877766544332 2356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|++|+||||||+||+.++..+++.|+++. .++|+|+++|++ .....||+|++|++|+++..|+.+
T Consensus 483 Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~~g~~~ 559 (576)
T TIGR02204 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRL--ATVLKADRIVVMDQGRIVAQGTHA 559 (576)
T ss_pred HHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHhCCEEEEEECCEEEeeecHH
Confidence 99999999999999999999999999999999999999985 479999999997 345779999999999999999987
Q ss_pred HHH
Q 010314 334 ACL 336 (513)
Q Consensus 334 ~~~ 336 (513)
+..
T Consensus 560 ~l~ 562 (576)
T TIGR02204 560 ELI 562 (576)
T ss_pred HHH
Confidence 764
No 296
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5e-39 Score=361.97 Aligned_cols=217 Identities=27% Similarity=0.382 Sum_probs=183.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|+++.|+. ..+.+|+|+|+.+++|+.+||+|+||||||||+|+|+|+++|++ |+|++||.+...
T Consensus 454 ~~i~~~~vsf~y~~---~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~---G~I~idg~~i~~~~~~ 527 (694)
T TIGR01846 454 GAITFENIRFRYAP---DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH---GQVLVDGVDLAIADPA 527 (694)
T ss_pred CeEEEEEEEEEcCC---CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCEehhhCCHH
Confidence 36999999999953 23469999999999999999999999999999999999999975 999999987542
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqr 253 (513)
.++.++||+|++.+|+ .|++||+.++ .+. ..++.+.++++.+++.+..++++.|.+ ....||||||
T Consensus 528 ~~r~~i~~v~q~~~lf~-~ti~eNi~~~----~~~---~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~ 599 (694)
T TIGR01846 528 WLRRQMGVVLQENVLFS-RSIRDNIALC----NPG---APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQR 599 (694)
T ss_pred HHHHhCeEEccCCeehh-hhHHHHHhcC----CCC---CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHH
Confidence 1356999999999996 4999999653 121 234567888999999887666544333 2367999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+||||||||++||+.++..+++.|+++. .++|+|+++|++. .+ ..||+|++|++|++++.|+.+
T Consensus 600 qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~-~~~d~ii~l~~G~i~~~g~~~ 676 (694)
T TIGR01846 600 QRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS-TV-RACDRIIVLEKGQIAESGRHE 676 (694)
T ss_pred HHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH-HH-HhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999999999985 5789999999974 44 569999999999999999988
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++.+
T Consensus 677 ~l~~ 680 (694)
T TIGR01846 677 ELLA 680 (694)
T ss_pred HHHH
Confidence 7654
No 297
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7.4e-39 Score=352.85 Aligned_cols=216 Identities=22% Similarity=0.266 Sum_probs=181.5
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|++++|+.. .+.+|+|+|+++++|++++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 313 ~I~~~~v~~~y~~~---~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~---G~i~~~g~~~~~~~~~~ 386 (569)
T PRK10789 313 ELDVNIRQFTYPQT---DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSE---GDIRFHDIPLTKLQLDS 386 (569)
T ss_pred cEEEEEEEEECCCC---CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCC---CEEEECCEEHhhCCHHH
Confidence 58999999999531 2469999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqrq 254 (513)
.++.++|++|++.+|+. |++||+.++. +. ..++.+.++++.+++.+...+++.|.. ....|||||||
T Consensus 387 ~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~~---~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~q 458 (569)
T PRK10789 387 WRSRLAVVSQTPFLFSD-TVANNIALGR----PD---ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQ 458 (569)
T ss_pred HHhheEEEccCCeeccc-cHHHHHhcCC----CC---CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 13569999999999975 9999996531 11 234567788888888766555443322 34579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|++|||||+.+|+||||||||++||+.++..+++.|+++. +++|+|+++|++. ....||+|++|++|++++.|+.++
T Consensus 459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~ 535 (569)
T PRK10789 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQ 535 (569)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999985 5899999999974 356799999999999999999887
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
+..
T Consensus 536 l~~ 538 (569)
T PRK10789 536 LAQ 538 (569)
T ss_pred HHH
Confidence 653
No 298
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=6.6e-39 Score=329.77 Aligned_cols=186 Identities=27% Similarity=0.447 Sum_probs=161.7
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhh
Q 010314 141 IMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQ 217 (513)
Q Consensus 141 liGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~ 217 (513)
|+||||||||||+++|+|+++|++ |+|.++|++... ..+.++|++|++.+++.+||+||+.|...... ....+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~---G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~-~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDS---GSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRK-VPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCc---eEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcC-CCHHH
Confidence 689999999999999999999875 999999987532 23569999999999999999999998754321 11123
Q ss_pred HHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-
Q 010314 218 RKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST- 296 (513)
Q Consensus 218 ~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~- 296 (513)
..++++++++.++|.+..++.+ .+|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++.++
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKP------HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCCh------hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 4467889999999998887754 599999999999999999999999999999999999999999999999765
Q ss_pred CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 297 GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 297 g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+|+|+++|+. .++..+||++++|++|+++..|+++++..
T Consensus 151 g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 151 GITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 89999988886 57899999999999999999999988754
No 299
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=5.7e-39 Score=332.82 Aligned_cols=213 Identities=23% Similarity=0.315 Sum_probs=187.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--C-
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--P- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~- 180 (513)
..++++++++.|+ +..+++||||++++||+.||+|+||||||||+++|.|+++|++ |+|.++|++... +
T Consensus 3 ~~l~~~~itK~f~-----~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~---GeI~v~G~~v~~~sP~ 74 (501)
T COG3845 3 PALEMRGITKRFP-----GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS---GEIRVDGKEVRIKSPR 74 (501)
T ss_pred ceEEEeccEEEcC-----CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCc---ceEEECCEEeccCCHH
Confidence 4689999999994 5679999999999999999999999999999999999999985 999999987532 2
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhcC--CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQL--PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
+..||+|+|+..|+|++||.||+..+..-.. .......+++++++.+..||.=-.+..++ +||-|||||
T Consensus 75 dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~------dLsVG~qQR 148 (501)
T COG3845 75 DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA------DLSVGEQQR 148 (501)
T ss_pred HHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee------cCCcchhHH
Confidence 2469999999999999999999987653211 11224566789999999999866666555 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
|.|-++|..+|++|||||||+-|-|....++++.|++|+++|+|||++||-. .++.++|||+.||.+|+++..-+
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL-KEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhhCeeEEEeCCeEEeeec
Confidence 9999999999999999999999999999999999999999999999988876 69999999999999999886655
No 300
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=5.7e-39 Score=349.37 Aligned_cols=211 Identities=18% Similarity=0.217 Sum_probs=176.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|++. .+|+||||.+++|++++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 267 ~~l~~~~l~~----------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~---G~i~~~g~~i~~~~~~ 333 (510)
T PRK15439 267 PVLTVEDLTG----------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG---GRIMLNGKEINALSTA 333 (510)
T ss_pred ceEEEeCCCC----------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCC---cEEEECCEECCCCCHH
Confidence 3588899873 15999999999999999999999999999999999999875 9999999865321
Q ss_pred ---CceEEEEcCCc---ccCCCCCHHHHHHHHHH--hcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHH
Q 010314 181 ---YGSYGFVERET---TLIGSLTVREYLYYSAL--LQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 181 ---~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~--~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGG 251 (513)
+..++|++|++ .+++.+|+.||+..... ..........++.++++++.++|. +..++.+ ..||||
T Consensus 334 ~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG 407 (510)
T PRK15439 334 QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA------RTLSGG 407 (510)
T ss_pred HHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc------ccCCcH
Confidence 23689999984 48888999999854211 111111112335688999999996 6666654 499999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
|||||+|||||+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. .++.++||++++|++|++++.|+
T Consensus 408 ~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~ 486 (510)
T PRK15439 408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALT 486 (510)
T ss_pred HHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999999988899999988886 58899999999999999999887
Q ss_pred hHH
Q 010314 332 TLA 334 (513)
Q Consensus 332 ~~~ 334 (513)
+++
T Consensus 487 ~~~ 489 (510)
T PRK15439 487 GAA 489 (510)
T ss_pred ccc
Confidence 754
No 301
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.8e-38 Score=308.44 Aligned_cols=201 Identities=23% Similarity=0.250 Sum_probs=161.5
Q ss_pred EEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-------
Q 010314 107 VWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------- 179 (513)
Q Consensus 107 ~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------- 179 (513)
.+.|+.+.|.. .+.+++|+||++++||+++|+|||||||||||++|+|+++|+. |+|.++|.+...
T Consensus 2 ~~~~~~~~~~~----~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~~ 74 (218)
T cd03290 2 QVTNGYFSWGS----GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLE---GKVHWSNKNESEPSFEATR 74 (218)
T ss_pred eeeeeEEecCC----CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCC---CeEEECCcccccccccccc
Confidence 46788888752 2469999999999999999999999999999999999998874 999999975421
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGE 252 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGq 252 (513)
.++.++|++|++.++ ..|++||+.+... .. .....++++.++|.+..+....+ ..++..|||||
T Consensus 75 ~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~ 145 (218)
T cd03290 75 SRNRYSVAYAAQKPWLL-NATVEENITFGSP----FN----KQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQ 145 (218)
T ss_pred hhhcceEEEEcCCCccc-cccHHHHHhhcCc----CC----HHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHH
Confidence 124699999999888 5799999976421 11 12345667777876654432111 13567999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV--TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~--~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
||||+|||+|+.+|++|||||||+|||+.++..+++ +++.+.+.|.|+|+++|+.. .+ ..||++++|++|.
T Consensus 146 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 146 RQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 999999999999999999999999999999999998 67777666899999999874 55 5699999999884
No 302
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2e-38 Score=350.31 Aligned_cols=215 Identities=23% Similarity=0.293 Sum_probs=179.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|+++.|++ .+.+|+|+|+++++|+.++|+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 334 ~i~~~~v~~~y~~----~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~ 406 (585)
T TIGR01192 334 AVEFRHITFEFAN----SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTV---GQILIDGIDINTVTRES 406 (585)
T ss_pred eEEEEEEEEECCC----CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCC---CEEEECCEEhhhCCHHH
Confidence 5999999999953 2358999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqrq 254 (513)
.++.++|++|++.+|+ .|++||+.++. +. ..++.+.++++..++.+...+.+.|. .....|||||||
T Consensus 407 ~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~~---~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~q 478 (585)
T TIGR01192 407 LRKSIATVFQDAGLFN-RSIRENIRLGR----EG---ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQ 478 (585)
T ss_pred HHhheEEEccCCccCc-ccHHHHHhcCC----CC---CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHH
Confidence 2357999999999986 59999997631 21 12344667777777776554443222 234679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|++|||||+.+|+||||||||+|||+.++..+.+.|+++. +++|+|+++|++. .+ ..||+|++|++|++++.|+.++
T Consensus 479 rl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 555 (585)
T TIGR01192 479 RLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS-TV-RNADLVLFLDQGRLIEKGSFQE 555 (585)
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH-HH-HcCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999885 5899999999974 44 6699999999999999999887
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
...
T Consensus 556 l~~ 558 (585)
T TIGR01192 556 LIQ 558 (585)
T ss_pred HHH
Confidence 654
No 303
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-38 Score=298.30 Aligned_cols=230 Identities=21% Similarity=0.331 Sum_probs=196.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
+.|+++||.+++.++ +.||++||++|++||+.+||||||||||||.++|+|.- ....++|+|.++|+++..
T Consensus 2 ~~L~I~dLhv~v~~~----keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p-~Y~Vt~G~I~~~GedI~~l~~~ 76 (251)
T COG0396 2 MMLEIKDLHVEVEGK----KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP-KYEVTEGEILFDGEDILELSPD 76 (251)
T ss_pred ceeEEeeeEEEecCc----hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC-CceEecceEEECCcccccCCHh
Confidence 468999999998532 47999999999999999999999999999999999973 333467999999987532
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc--hhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF--FCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrq 254 (513)
.+..+...+|.|.=+|..|+.+.|..+...+.... ..+..+.+++.++.+++.+ ++++.++ -++||||||
T Consensus 77 ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN-----~GFSGGEkK 151 (251)
T COG0396 77 ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN-----EGFSGGEKK 151 (251)
T ss_pred HHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC-----CCcCcchHH
Confidence 23467888999999999999999987765432221 1244567889999999976 7888775 489999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcC--CEEEEEeCCeEEEEeCh
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF--DRICLLSNGNTLFFGET 332 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~--D~v~vL~~G~iv~~G~~ 332 (513)
|..|+..++.+|++.|||||-||||..+-+.|.+.+..+++.|.+++++||+. .+..+. |+|.+|.+|+||..|.+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH
Confidence 99999999999999999999999999999999999999999999999988885 566665 99999999999999999
Q ss_pred HHHHHHhHhcCCCC
Q 010314 333 LACLQHFSNAGFPC 346 (513)
Q Consensus 333 ~~~~~~f~~~g~~~ 346 (513)
++...++..|+.|
T Consensus 230 -el~~~le~~gy~~ 242 (251)
T COG0396 230 -ELAEELEEKGYDW 242 (251)
T ss_pred -HHHHHHHHhchHH
Confidence 8888888888765
No 304
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1e-38 Score=380.45 Aligned_cols=222 Identities=20% Similarity=0.291 Sum_probs=186.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-------------------
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA------------------- 164 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~------------------- 164 (513)
..++|+||+|+|+++ ..+++|+|+||++++|+.+||+||||||||||+++|+|++.|..
T Consensus 1164 g~I~f~nVsF~Y~~~--~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR--PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred ceEEEEEEEEECCCC--CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 369999999999642 23469999999999999999999999999999999999998720
Q ss_pred --------------------------------CceeEEEECCEeCCC-----CCceEEEEcCCcccCCCCCHHHHHHHHH
Q 010314 165 --------------------------------RMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSLTVREYLYYSA 207 (513)
Q Consensus 165 --------------------------------~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~ 207 (513)
..+|+|++||.++.. .++.++||+|++.||+ .|++|||.++.
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~ 1320 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCC
Confidence 036999999988532 2457999999999995 69999998751
Q ss_pred HhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 010314 208 LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (513)
Q Consensus 208 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~ 282 (513)
+. ..++.++++++..++.++...++.|.+ ....||||||||++|||||+.+|+|||||||||+||+.+
T Consensus 1321 ----~~---at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265 1321 ----ED---ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred ----CC---CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 21 234568899999999888766655443 335699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HcCCeEEEEEeCChHHHHhcCCEEEEEeC----CeEE-EEeChHHHHH
Q 010314 283 ALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN----GNTL-FFGETLACLQ 337 (513)
Q Consensus 283 ~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~----G~iv-~~G~~~~~~~ 337 (513)
.+.|.+.|.++. .+++|+|+++|+.+ ..+.||+|++|++ |+++ +.|+.++++.
T Consensus 1394 E~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1394 EKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999999999986 36899999999873 4567999999999 9955 8999888753
No 305
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=9.9e-38 Score=314.67 Aligned_cols=205 Identities=21% Similarity=0.313 Sum_probs=167.0
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
...++++|+++. .+.+|+++||.+++||+++|+|+||||||||+++|+|+++|.. |+|.++|
T Consensus 37 ~~~l~i~nls~~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~---G~I~i~g-------- 98 (282)
T cd03291 37 DNNLFFSNLCLV-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSE---GKIKHSG-------- 98 (282)
T ss_pred CCeEEEEEEEEe-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC--------
Confidence 356999999984 1359999999999999999999999999999999999999875 9999988
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVR 257 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrqRv~ 257 (513)
.++|++|++.+++. ||+||+.+.... . ...+.++++.+++.+..+....+ ...+..|||||||||+
T Consensus 99 ~i~yv~q~~~l~~~-tv~enl~~~~~~---~-----~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~ 169 (282)
T cd03291 99 RISFSSQFSWIMPG-TIKENIIFGVSY---D-----EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARIS 169 (282)
T ss_pred EEEEEeCccccccc-CHHHHhhccccc---C-----HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHH
Confidence 38999999988875 999999763211 0 12234556667776555443211 1234689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTL-KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||+|+.+|+||||||||+|||+.++..+++.+ +.+. ++.|||+++|+.. .+ ..||++++|++|++++.|+++++.
T Consensus 170 lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 170 LARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred HHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999865 5554 4789999888874 45 579999999999999999988764
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 247 ~ 247 (282)
T cd03291 247 S 247 (282)
T ss_pred h
Confidence 3
No 306
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-38 Score=343.77 Aligned_cols=207 Identities=18% Similarity=0.261 Sum_probs=173.3
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (513)
++++|++++|. .+.+|+|+||+|++|++++|+||||||||||||+|+|+++|+. |+|.++|. ..++
T Consensus 2 l~i~~ls~~~~-----~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~---G~i~~~~~------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFG-----AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSA---GNVSLDPN------ERLG 67 (530)
T ss_pred EEEEEEEEEeC-----CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CEEE
Confidence 68999999984 3469999999999999999999999999999999999999875 99999873 3589
Q ss_pred EEcCCcccCCCCCHHHHHHHHHH-h-----------cCCC---c----------------hhhHHHHHHHHHHHcCChhH
Q 010314 186 FVERETTLIGSLTVREYLYYSAL-L-----------QLPG---F----------------FCQRKNVVEDAIHAMSLSDY 234 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~-~-----------~~~~---~----------------~~~~~~~v~~~l~~~~L~~~ 234 (513)
|++|++.+++.+||.|++.++.. . ..+. . ..+.+.++.++++.+||.+.
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 99999989999999999976421 0 0000 0 00123567889999999764
Q ss_pred H-hhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHh
Q 010314 235 A-NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313 (513)
Q Consensus 235 ~-~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~ 313 (513)
. ++. +..|||||||||+||++|+.+|+||||||||+|||+.++..+.++|++ .|.|||+++|+. ..+..
T Consensus 148 ~~~~~------~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~-~~~~~ 217 (530)
T PRK15064 148 QHYGL------MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDR-HFLNS 217 (530)
T ss_pred HhcCc------hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCH-HHHHh
Confidence 4 343 349999999999999999999999999999999999999999999863 588999988876 57889
Q ss_pred cCCEEEEEeCCeE-EEEeChHHHH
Q 010314 314 LFDRICLLSNGNT-LFFGETLACL 336 (513)
Q Consensus 314 ~~D~v~vL~~G~i-v~~G~~~~~~ 336 (513)
+||+|++|++|++ ++.|++++..
T Consensus 218 ~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 218 VCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred hcceEEEEeCCEEEEecCCHHHHH
Confidence 9999999999999 4788887654
No 307
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.4e-38 Score=292.64 Aligned_cols=156 Identities=25% Similarity=0.450 Sum_probs=137.2
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++|+++.|. .+++++++||++++||+++|+||||||||||+++|+|+.+|+. |+|.++|.+....
T Consensus 1 l~~~~l~~~~~-----~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~---G~v~~~g~~~~~~~~~~~ 72 (163)
T cd03216 1 LELRGITKRFG-----GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS---GEILVDGKEVSFASPRDA 72 (163)
T ss_pred CEEEEEEEEEC-----CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEECCcCCHHHH
Confidence 46899999994 2469999999999999999999999999999999999999875 9999999764210
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.+.++|++| ||||||||++||
T Consensus 73 ~~~~i~~~~q----------------------------------------------------------LS~G~~qrl~la 94 (163)
T cd03216 73 RRAGIAMVYQ----------------------------------------------------------LSVGERQMVEIA 94 (163)
T ss_pred HhcCeEEEEe----------------------------------------------------------cCHHHHHHHHHH
Confidence 122444444 899999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
|||+.+|++|||||||+|||+.++..+.+.|++++++|.|+|+++|+. .++.++||++++|++|++++
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999987789999988886 46888999999999999875
No 308
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-38 Score=296.42 Aligned_cols=166 Identities=30% Similarity=0.507 Sum_probs=145.5
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (513)
++++|+++.|.++ ...+|+++||++++|++++|+||||||||||+++|+|+++|.. |+|.++|.+... .
T Consensus 1 l~~~~l~~~~~~~---~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~---G~i~~~g~~~~~~~~~~~ 74 (171)
T cd03228 1 IEFKNVSFSYPGR---PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS---GEILIDGVDLRDLDLESL 74 (171)
T ss_pred CEEEEEEEEcCCC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC---CEEEECCEEhhhcCHHHH
Confidence 4689999988532 1369999999999999999999999999999999999999875 999999987532 1
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+.++|++|++.+++ .|+.||+ |||||||||+|||
T Consensus 75 ~~~i~~~~~~~~~~~-~t~~e~l--------------------------------------------LS~G~~~rl~la~ 109 (171)
T cd03228 75 RKNIAYVPQDPFLFS-GTIRENI--------------------------------------------LSGGQRQRIAIAR 109 (171)
T ss_pred HhhEEEEcCCchhcc-chHHHHh--------------------------------------------hCHHHHHHHHHHH
Confidence 246899999988776 5888776 8999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||+++|++ +++.. ||++++|++|+
T Consensus 110 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 110 ALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999864 78999988887 46666 99999999885
No 309
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.2e-38 Score=294.41 Aligned_cols=164 Identities=29% Similarity=0.412 Sum_probs=143.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (513)
++++|+++.|++ .+.+|+++|+++++||+++|+||||||||||+++|+|+++|+. |+|.++|. +.++
T Consensus 1 i~~~~~~~~~~~----~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~~~------~~i~ 67 (166)
T cd03223 1 IELENLSLATPD----GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGS---GRIGMPEG------EDLL 67 (166)
T ss_pred CEEEEEEEEcCC----CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---ceEEECCC------ceEE
Confidence 468999998842 2469999999999999999999999999999999999999875 99999874 5689
Q ss_pred EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
|++|++.++ ..||.||+.+. . +.+||||||||++|||||+.+
T Consensus 68 ~~~q~~~~~-~~tv~~nl~~~-------------------------------~------~~~LS~G~~~rv~laral~~~ 109 (166)
T cd03223 68 FLPQRPYLP-LGTLREQLIYP-------------------------------W------DDVLSGGEQQRLAFARLLLHK 109 (166)
T ss_pred EECCCCccc-cccHHHHhhcc-------------------------------C------CCCCCHHHHHHHHHHHHHHcC
Confidence 999998765 57999998541 1 248999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 266 P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
|++|+|||||+|||+.++..+.+.|+++ +.|+|+++|++. ....||++++|++|.
T Consensus 110 p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~~ 164 (166)
T cd03223 110 PKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGEG 164 (166)
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCCC
Confidence 9999999999999999999999999886 589999999873 357999999998764
No 310
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6.1e-38 Score=299.73 Aligned_cols=190 Identities=22% Similarity=0.284 Sum_probs=159.0
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCceE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGSY 184 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~~~ 184 (513)
++++|+++.|. .+.++ ++||++++||+++|+|+||||||||+++|+|+.+|+. |+|.++|.+... ..+.+
T Consensus 2 l~~~~l~~~~~-----~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~---G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 2 LSLHQLQFNIE-----QKNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSS---GNIYYKNCNINNIAKPYC 72 (195)
T ss_pred eEEEEeeEEEC-----CcEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCcccChhhhhhE
Confidence 68999999984 23455 4999999999999999999999999999999999875 999999976532 12458
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~ 264 (513)
+|++|+..+++.+||.||+.+..... ...+.+.++++.+++.+..++.+ ..||||||||++|||||+.
T Consensus 73 ~~~~~~~~~~~~~tv~~~l~~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~------~~LS~G~~~rl~la~al~~ 140 (195)
T PRK13541 73 TYIGHNLGLKLEMTVFENLKFWSEIY------NSAETLYAAIHYFKLHDLLDEKC------YSLSSGMQKIVAIARLIAC 140 (195)
T ss_pred EeccCCcCCCccCCHHHHHHHHHHhc------ccHHHHHHHHHHcCCHhhhccCh------hhCCHHHHHHHHHHHHHhc
Confidence 99999988888899999998754221 12345778899999988777754 4999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEE
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 318 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v 318 (513)
+|++|||||||+|||+.++..+.+.|+...+.|.|+|+++|+.. .+ ..+|.+
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i-~~~~~~ 192 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLES-SI-KSAQIL 192 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCcc-cc-chhhee
Confidence 99999999999999999999999999877777899999999874 33 446654
No 311
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.8e-38 Score=310.19 Aligned_cols=181 Identities=18% Similarity=0.216 Sum_probs=151.3
Q ss_pred eeeeeeeEE-----eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCH
Q 010314 125 VVKSSNGYA-----LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTV 199 (513)
Q Consensus 125 iL~~vs~~i-----~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV 199 (513)
.++++++.+ ++||+++|+||||||||||+++|+|+++|+. |+|.++|. .++|++|+...++.+||
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~---G~i~~~g~-------~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDE---GDIEIELD-------TVSYKPQYIKADYEGTV 78 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---CeEEECCc-------eEEEecccccCCCCCCH
Confidence 445555555 5899999999999999999999999999875 99999984 58999999887778999
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 010314 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279 (513)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD 279 (513)
.|++.+...... .....+.++++.++|.+..++.++ .|||||||||+||+||+.+|+++||||||++||
T Consensus 79 ~e~l~~~~~~~~-----~~~~~~~~~l~~l~l~~~~~~~~~------~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 79 RDLLSSITKDFY-----THPYFKTEIAKPLQIEQILDREVP------ELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHHhhhcc-----ccHHHHHHHHHHcCCHHHhhCChh------hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 999965432111 112346788999999888777554 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 010314 280 SVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (513)
Q Consensus 280 ~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (513)
+.++..+.++|+++++ .|+|||+++|+. ..+..+||++++|+++..+
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~ 195 (246)
T cd03237 148 VEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSV 195 (246)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCee
Confidence 9999999999999976 489999988886 5788899999999765433
No 312
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=8.2e-38 Score=303.19 Aligned_cols=194 Identities=15% Similarity=0.133 Sum_probs=158.6
Q ss_pred eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEE-ECCEeCCCCCceEEEEcCCcccCCCCCHHHHH
Q 010314 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-VNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 125 iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~-i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
+|+||||.+++|++++|+||||||||||+++|+|+++|++ |+|. ++|... .+.+.+.+++.+|+.||+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~s---G~i~~~~~~~~--------~~~~~~~l~~~ltv~enl 70 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDE---GDFIGLRGDAL--------PLGANSFILPGLTGEENA 70 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCC---CCEEEecCcee--------ccccccccCCcCcHHHHH
Confidence 7999999999999999999999999999999999998875 9997 776432 123456788999999999
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~ 283 (513)
.+........ ..+..+.+.+.++|.+..++.++ .||||||||++|||||+.+|+++||||||++||+.++
T Consensus 71 ~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~------~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~ 140 (213)
T PRK15177 71 RMMASLYGLD----GDEFSHFCYQLTQLEQCYTDRVS------EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQ 140 (213)
T ss_pred HHHHHHcCCC----HHHHHHHHHHHhChhHHhhchHh------hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 8865432111 11222344566788777777654 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHhHh
Q 010314 284 LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341 (513)
Q Consensus 284 ~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~ 341 (513)
..+.+.|.+..+ +.++|+++|++ ..+..+||++++|++|++++.|+.+++...+..
T Consensus 141 ~~~~~~l~~~~~-~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 141 LRMQAALACQLQ-QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHhh-CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 999998865443 35788877776 578889999999999999999999888766544
No 313
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=4.4e-38 Score=345.71 Aligned_cols=210 Identities=18% Similarity=0.225 Sum_probs=177.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|+++.|+++....+.+|+|+|+++++|+++||+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~---G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE---GEILLDGAAVSADSRD 412 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEECCCCCHH
Confidence 4699999999996421112369999999999999999999999999999999999999975 9999999876431
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
++.++|++|++.+|.. |+++|+. + ...++.+.++++.+++.+..+..+.|.+....||||||||++|
T Consensus 413 ~~~~~i~~v~q~~~lf~~-ti~~n~~-------~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlal 481 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFDD-LIGPDEG-------E---HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLAL 481 (555)
T ss_pred HHHhhCcEEccChhhhhh-hhhcccc-------c---chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHH
Confidence 2568999999998865 7888741 1 1234568889999999998888777777778999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLK-KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~-~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
||||+.+|+||||||||++||+.++..+.+.+. .+...|+|+|+++|++. ..+.||+|++|++|++++.
T Consensus 482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999998664 55556899999999873 4678999999999999864
No 314
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.4e-38 Score=343.07 Aligned_cols=208 Identities=25% Similarity=0.300 Sum_probs=173.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++||++.|.+ .+.+|+||||+|.+|++++|+|||||||||||++|+|+++|++ |+|.+++. ..
T Consensus 5 ~~l~i~~l~~~y~~----~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~---G~i~~~~~------~~ 71 (556)
T PRK11819 5 YIYTMNRVSKVVPP----KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFE---GEARPAPG------IK 71 (556)
T ss_pred EEEEEeeEEEEeCC----CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CE
Confidence 36899999999941 3579999999999999999999999999999999999999875 99999752 46
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHH-h--------------cCCCc-h-------------------hhHHHHHHHHHHH
Q 010314 184 YGFVERETTLIGSLTVREYLYYSAL-L--------------QLPGF-F-------------------CQRKNVVEDAIHA 228 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~-~--------------~~~~~-~-------------------~~~~~~v~~~l~~ 228 (513)
+||++|++.+++.+||.||+.++.. + ..... . .+..+++.++++.
T Consensus 72 i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 151 (556)
T PRK11819 72 VGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA 151 (556)
T ss_pred EEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence 9999999999999999999976421 0 00000 0 0113467788999
Q ss_pred cCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCCh
Q 010314 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 229 ~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
+||.. .++.+ .+|||||||||+|||+|+.+|+||||||||+|||+.++..+.+.|+++. .|||+++|+.
T Consensus 152 ~gl~~-~~~~~------~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~- 220 (556)
T PRK11819 152 LRCPP-WDAKV------TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDR- 220 (556)
T ss_pred CCCCc-ccCch------hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCH-
Confidence 99953 45544 4999999999999999999999999999999999999999999999873 4888888876
Q ss_pred HHHHhcCCEEEEEeCCeEE-EEeChHHH
Q 010314 309 TEVFGLFDRICLLSNGNTL-FFGETLAC 335 (513)
Q Consensus 309 ~~i~~~~D~v~vL~~G~iv-~~G~~~~~ 335 (513)
..+..+||+|++|++|+++ +.|+.++.
T Consensus 221 ~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 221 YFLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred HHHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 6788999999999999986 77877654
No 315
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-38 Score=341.68 Aligned_cols=203 Identities=25% Similarity=0.348 Sum_probs=173.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++||++.|. .+.+|+|+||.|++|++++|+||||||||||+++|+|+++|+. |+|.++|. ..
T Consensus 318 ~~l~~~~l~~~~~-----~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~ 383 (530)
T PRK15064 318 NALEVENLTKGFD-----NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS---GTVKWSEN------AN 383 (530)
T ss_pred ceEEEEeeEEeeC-----CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCc------eE
Confidence 4699999999984 3469999999999999999999999999999999999998875 99999874 46
Q ss_pred EEEEcCCcc--cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 184 YGFVERETT--LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 184 ~~yv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
++|++|++. +++.+||.|++.+.. .. ...++.++++++.+++. +..++.+ .+|||||||||+|||
T Consensus 384 i~~~~q~~~~~~~~~~t~~~~~~~~~---~~---~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgGq~qrv~la~ 451 (530)
T PRK15064 384 IGYYAQDHAYDFENDLTLFDWMSQWR---QE---GDDEQAVRGTLGRLLFSQDDIKKSV------KVLSGGEKGRMLFGK 451 (530)
T ss_pred EEEEcccccccCCCCCcHHHHHHHhc---cC---CccHHHHHHHHHHcCCChhHhcCcc------cccCHHHHHHHHHHH
Confidence 999999863 566799999985421 11 12235678999999994 6666654 499999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChHHHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACL 336 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~ 336 (513)
+|+.+|+||||||||+|||+.++..+++.|+++ +.|||+++|+. ..+..+||++++|++|+++ +.|++.+.+
T Consensus 452 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 452 LMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 999999999999999999999999999999886 35899988886 5888999999999999998 788877654
No 316
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.9e-38 Score=326.29 Aligned_cols=222 Identities=23% Similarity=0.326 Sum_probs=187.8
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-- 180 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-- 180 (513)
...|.++++++.-++ ..+.+|+++||.+.+||.+||+||||||||||.|+|.|..+|.+ |.|.+||.+...+
T Consensus 332 ~g~L~Ve~l~~~PPg---~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~---G~VRLDga~l~qWd~ 405 (580)
T COG4618 332 QGALSVERLTAAPPG---QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS---GSVRLDGADLRQWDR 405 (580)
T ss_pred CceeeEeeeeecCCC---CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCC---CcEEecchhhhcCCH
Confidence 457999999985432 34679999999999999999999999999999999999999975 9999999875433
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCC-----CCCCHHH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM-----KGLPCGE 252 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~-----~~LSGGq 252 (513)
-+++||+||+-.||+. ||.|||.- + .. +...+.|-++.+..|..++.-+++.|++.. ..|||||
T Consensus 406 e~lG~hiGYLPQdVeLF~G-TIaeNIaR---f--~~--~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQ 477 (580)
T COG4618 406 EQLGRHIGYLPQDVELFDG-TIAENIAR---F--GE--EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQ 477 (580)
T ss_pred HHhccccCcCcccceecCC-cHHHHHHh---c--cc--cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchH
Confidence 2579999999999976 99999942 2 11 123344666667777766665555554433 5699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
|||+++||||..+|.+++||||-|+||......+.+.|.+++++|.|+|+++|.| .+...+|+|++|++|++..+|+.
T Consensus 478 RQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRP--s~L~~~Dkilvl~~G~~~~FG~r 555 (580)
T COG4618 478 RQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRP--SALASVDKILVLQDGRIAAFGPR 555 (580)
T ss_pred HHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCH--HHHhhcceeeeecCChHHhcCCH
Confidence 9999999999999999999999999999999999999999999999999999987 47889999999999999999999
Q ss_pred HHHHHHhH
Q 010314 333 LACLQHFS 340 (513)
Q Consensus 333 ~~~~~~f~ 340 (513)
+|++..+.
T Consensus 556 ~eVLa~~~ 563 (580)
T COG4618 556 EEVLAKVL 563 (580)
T ss_pred HHHHHHhc
Confidence 99988754
No 317
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-38 Score=340.80 Aligned_cols=212 Identities=19% Similarity=0.241 Sum_probs=174.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|+++.+ +.+|++|||.+++||+++|+||||||||||+++|+|+.+|++ |+|.++|++....
T Consensus 249 ~~i~~~~l~~~~-------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~~~ 318 (491)
T PRK10982 249 VILEVRNLTSLR-------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSA---GTITLHGKKINNHNAN 318 (491)
T ss_pred cEEEEeCccccc-------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCc---cEEEECCEECCCCCHH
Confidence 468999998852 259999999999999999999999999999999999999875 9999999875321
Q ss_pred ---CceEEEEcCCc---ccCCCCCHHHHHHHHHH---hcC-CC-chhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCC
Q 010314 181 ---YGSYGFVERET---TLIGSLTVREYLYYSAL---LQL-PG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGL 248 (513)
Q Consensus 181 ---~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~---~~~-~~-~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~L 248 (513)
.+.++|++|+. .+++.+|+.+|..+... ... .. ......+.+.++++.+++. +..++. +.+|
T Consensus 319 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~L 392 (491)
T PRK10982 319 EAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ------IGSL 392 (491)
T ss_pred HHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc------cccC
Confidence 23489999985 47888988877432210 110 10 1122345678899999995 455654 4599
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
||||||||+|||+|+.+|+||||||||+|||+.++..++++|+++.++|.|||+++|+. .++..+||++++|++|+++.
T Consensus 393 SgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEM-PELLGITDRILVMSNGLVAG 471 (491)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCCh-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999988899999988887 57889999999999999998
Q ss_pred EeCh
Q 010314 329 FGET 332 (513)
Q Consensus 329 ~G~~ 332 (513)
.+++
T Consensus 472 ~~~~ 475 (491)
T PRK10982 472 IVDT 475 (491)
T ss_pred EEcc
Confidence 7765
No 318
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=5.1e-38 Score=340.41 Aligned_cols=213 Identities=22% Similarity=0.338 Sum_probs=171.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCceeEEEECCEeCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-SARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~-~~~~~G~I~i~G~~~~~--- 179 (513)
..++++|+++.|. .+.+|+|+||.+++||+++|+||||||||||+++|+|+.++ + +|+|+++|++...
T Consensus 259 ~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~---~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 259 PRIVLNNGVVSYN-----DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGY---SNDLTLFGRRRGSGET 330 (490)
T ss_pred ceEEEeceEEEEC-----CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCccc---CCeEEEecccCCCCCC
Confidence 4699999999984 34699999999999999999999999999999999998765 3 4999999975321
Q ss_pred ---CCceEEEEcCCcccCCC--CCHHHHHHHHHHh--cCC-CchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCH
Q 010314 180 ---PYGSYGFVERETTLIGS--LTVREYLYYSALL--QLP-GFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~--lTV~E~l~~~~~~--~~~-~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSG 250 (513)
..+.++|++|++.++.. .|+++++.+.... ... ......++.++++++.++|.+ ..++.+ .+|||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~------~~LSg 404 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPF------HSLSW 404 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCch------hhCCH
Confidence 12469999998765433 5777776543211 110 111123456889999999986 767654 49999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEEeCChHHHHh-cCCEEEEEeCCeEEE
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQSSTEVFG-LFDRICLLSNGNTLF 328 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~t~h~~~~~i~~-~~D~v~vL~~G~iv~ 328 (513)
||||||+|||||+.+|+||||||||+|||+.++..++++|+++++++ .|||+++|+. .++.+ +||++++|++|++++
T Consensus 405 Gq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~ 483 (490)
T PRK10938 405 GQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIYR 483 (490)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceEE
Confidence 99999999999999999999999999999999999999999998775 4689988886 46766 599999999999987
Q ss_pred EeC
Q 010314 329 FGE 331 (513)
Q Consensus 329 ~G~ 331 (513)
.-.
T Consensus 484 ~~~ 486 (490)
T PRK10938 484 YVQ 486 (490)
T ss_pred eec
Confidence 643
No 319
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=4.3e-38 Score=344.01 Aligned_cols=188 Identities=28% Similarity=0.395 Sum_probs=160.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++|+|++ .+++|+|+|+++++||.+||+||||||||||+++|+|+++|++ |+|.+||.+...
T Consensus 333 ~~I~~~~vsf~Y~~----~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~---G~I~i~g~~i~~~~~~ 405 (529)
T TIGR02868 333 PTLELRDLSFGYPG----SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQ---GEVTLDGVSVSSLQDE 405 (529)
T ss_pred ceEEEEEEEEecCC----CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEhhhHHHH
Confidence 35999999999953 2359999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqrq 254 (513)
.++.++||+|++.+|+. |++|||.++. +. ..++++.++++..++.++.++++.|.+. ...|||||||
T Consensus 406 lr~~i~~V~Q~~~lF~~-TI~eNI~~g~----~~---~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQ 477 (529)
T TIGR02868 406 LRRRISVFAQDAHLFDT-TVRDNLRLGR----PD---ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQ 477 (529)
T ss_pred HHhheEEEccCcccccc-cHHHHHhccC----CC---CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHH
Confidence 13479999999999965 9999997641 21 2346688999999998877666554443 2569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCC
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (513)
|++|||||+.+|+|||||||||+||+.++..|.+.|+++. +++|+|+++|++
T Consensus 478 RiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 478 RLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 9999999999999999999999999999999999999864 578999999974
No 320
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4e-38 Score=355.92 Aligned_cols=218 Identities=22% Similarity=0.320 Sum_probs=187.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||+|.|+.+ +..+||+|+|+++++|+.+||+|||||||||.+.+|-.++.|+. |.|.+||.+++..
T Consensus 986 G~I~~~~V~F~YPsR--P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~---G~V~IDg~dik~lnl~ 1060 (1228)
T KOG0055|consen 986 GDIEFRNVSFAYPTR--PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA---GKVKIDGVDIKDLNLK 1060 (1228)
T ss_pred eEEEEeeeEeeCCCC--CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCC---CeEEECCcccccCCHH
Confidence 369999999999854 56789999999999999999999999999999999999999975 9999999876432
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
++++|.|.|+|.||. -|++|||.|+. .+ ...+.+.++++..+..++...++.|++. ..+||||||
T Consensus 1061 ~LR~~i~lVsQEP~LF~-~TIrENI~YG~-~~------vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQK 1132 (1228)
T KOG0055|consen 1061 WLRKQIGLVSQEPVLFN-GTIRENIAYGS-EE------VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQK 1132 (1228)
T ss_pred HHHHhcceeccCchhhc-ccHHHHHhccC-CC------CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHH
Confidence 467999999999995 59999999871 11 1345677888888877776666655443 356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||+||||||++||+||||||.||+||.++.+.|-+.|.++. .|+|.|++.|..+ ..+.||.|+|+++|++++.|+-+
T Consensus 1133 QRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqnaD~I~Vi~~G~VvE~GtH~ 1209 (1228)
T KOG0055|consen 1133 QRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQNADVIAVLKNGKVVEQGTHD 1209 (1228)
T ss_pred HHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhcCCEEEEEECCEEEecccHH
Confidence 99999999999999999999999999999999999999976 5788888889874 46789999999999999999998
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 1210 ~L~~ 1213 (1228)
T KOG0055|consen 1210 ELLA 1213 (1228)
T ss_pred HHHh
Confidence 8765
No 321
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.7e-37 Score=339.20 Aligned_cols=209 Identities=24% Similarity=0.279 Sum_probs=169.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++||++.|.+ .+.+|+|+||+|++|++++|+|||||||||||++|+|+.+|+. |+|.+++. ..
T Consensus 3 ~~i~~~nls~~~~~----~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~ 69 (552)
T TIGR03719 3 YIYTMNRVSKVVPP----KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFN---GEARPAPG------IK 69 (552)
T ss_pred EEEEEeeEEEecCC----CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CE
Confidence 36899999999941 3469999999999999999999999999999999999998875 99999752 46
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHh---------------cCCCchh--------------------hHHHHHHHHHHH
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALL---------------QLPGFFC--------------------QRKNVVEDAIHA 228 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~---------------~~~~~~~--------------------~~~~~v~~~l~~ 228 (513)
++|++|++.+++.+||.||+.++... ..+.... ....++.++++.
T Consensus 70 i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (552)
T TIGR03719 70 VGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA 149 (552)
T ss_pred EEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence 99999999999999999999874311 0000000 011234556666
Q ss_pred cCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCCh
Q 010314 229 MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 229 ~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
+++.. .++ .+..|||||||||+|||+|+.+|+||||||||++||+.++..+.+.|+++ +.|||+++|+.
T Consensus 150 ~~l~~-~~~------~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~- 218 (552)
T TIGR03719 150 LRCPP-WDA------DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR- 218 (552)
T ss_pred CCCCc-ccC------chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH-
Confidence 66642 344 34599999999999999999999999999999999999999999999876 35888888876
Q ss_pred HHHHhcCCEEEEEeCCeEE-EEeChHHHH
Q 010314 309 TEVFGLFDRICLLSNGNTL-FFGETLACL 336 (513)
Q Consensus 309 ~~i~~~~D~v~vL~~G~iv-~~G~~~~~~ 336 (513)
..+..+||++++|++|+++ +.|+.++..
T Consensus 219 ~~~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 219 YFLDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred HHHHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 5788999999999999976 678877643
No 322
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.2e-37 Score=340.51 Aligned_cols=200 Identities=26% Similarity=0.402 Sum_probs=169.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|++++|++. .+++|+|+|+++++|+.++|+||||||||||+|+|+|+++|+. |+|.++|.+...
T Consensus 320 ~i~~~~v~f~y~~~---~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~I~~~g~~i~~~~~~~ 393 (529)
T TIGR02857 320 SLEFSGLSVAYPGR---RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE---GSIAVNGVPLADADADS 393 (529)
T ss_pred eEEEEEEEEECCCC---CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEehhhCCHHH
Confidence 69999999999642 2469999999999999999999999999999999999999975 999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqrq 254 (513)
.++.++||+|++.+|+ .|++||+.++. +. ..++.+.++++.+++.++.++++.|.+ ....|||||||
T Consensus 394 lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~~---~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~q 465 (529)
T TIGR02857 394 WRDQIAWVPQHPFLFA-GTIAENIRLAR----PD---ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQ 465 (529)
T ss_pred HHhheEEEcCCCcccC-cCHHHHHhccC----CC---CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHH
Confidence 1357999999999996 59999997642 11 134568889999999887766554433 34579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (513)
|++|||||+.+|+|||||||||+||+.+...+.+.|+++. .++|+|+++|++. ..+.||+|++|
T Consensus 466 ri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 466 RLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 9999999999999999999999999999999999999985 5789999999873 35679999986
No 323
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-38 Score=286.21 Aligned_cols=192 Identities=21% Similarity=0.350 Sum_probs=168.7
Q ss_pred ccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCceEEEEcCCcccCC
Q 010314 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYGSYGFVERETTLIG 195 (513)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~ 195 (513)
.+.++|+++||.+.+||..+|.||||||||||+|+++-+.+|++ |++++.|++... .+..++||.|.+.||+
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~---G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS---GTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCC---ceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 35679999999999999999999999999999999999999985 999999988643 2357999999999998
Q ss_pred CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 010314 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (513)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEP 274 (513)
. ||++|+.|+-.++.... .+....+.|+.++|.+ .+++.+. +||||||||++|+|-|..-|+||+||||
T Consensus 91 ~-tVeDNlifP~~~r~rr~---dr~aa~~llar~~l~~~~L~k~it------~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRRP---DRAAALDLLARFALPDSILTKNIT------ELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred c-chhhccccchHHhccCC---ChHHHHHHHHHcCCchhhhcchhh------hccchHHHHHHHHHHhhcCCceEEecCc
Confidence 7 99999999876654332 3456778899999975 5666554 9999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-HcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 275 LYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
||+||+.+++.|-++|.++. ++...++.+||++ ++..+.||+++-+..|++
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 99999999999999999997 6689999999887 578899999999999875
No 324
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.6e-37 Score=373.31 Aligned_cols=216 Identities=20% Similarity=0.276 Sum_probs=185.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++|+|++++|.. ..+.+|+|+||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1236 g~I~f~nVsf~Y~~---~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~---G~I~IDG~dI~~i~l~ 1309 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP---ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER---GRILIDGCDISKFGLM 1309 (1622)
T ss_pred CcEEEEEEEEEeCC---CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCC---ceEEECCEecccCCHH
Confidence 36999999999953 12469999999999999999999999999999999999999975 999999988643
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++++++|+|++.+|.. |++|||.+.. ...++.+.++++..++.++.+.++.|.+. ...||||||
T Consensus 1310 ~LR~~IsiVpQdp~LF~G-TIreNLd~~~--------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQr 1380 (1622)
T PLN03130 1310 DLRKVLGIIPQAPVLFSG-TVRFNLDPFN--------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQR 1380 (1622)
T ss_pred HHHhccEEECCCCccccc-cHHHHhCcCC--------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHH
Confidence 23679999999999975 9999996421 12346688999999998877666544433 246999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|+|+++|+.. .+ ..||+|++|++|+++++|+++
T Consensus 1381 QrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~-tI-~~~DrIlVLd~G~IvE~Gt~~ 1457 (1622)
T PLN03130 1381 QLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN-TI-IDCDRILVLDAGRVVEFDTPE 1457 (1622)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999875 4799999999874 34 459999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 1458 eLl~ 1461 (1622)
T PLN03130 1458 NLLS 1461 (1622)
T ss_pred HHHh
Confidence 9864
No 325
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.5e-37 Score=373.02 Aligned_cols=215 Identities=19% Similarity=0.271 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++|+|++++|.. ..+.+|+|+|++|++||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1234 ~I~f~nVsf~Y~~---~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~---G~I~IdG~di~~i~~~~ 1307 (1495)
T PLN03232 1234 SIKFEDVHLRYRP---GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK---GRIMIDDCDVAKFGLTD 1307 (1495)
T ss_pred cEEEEEEEEEECC---CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---ceEEECCEEhhhCCHHH
Confidence 6999999999952 22469999999999999999999999999999999999999975 999999988542
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERR 254 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqrq 254 (513)
.++.++||+|++.+|+. |++|||.+.. ...++.+.++++..++.++.+.++.|.+. ...|||||||
T Consensus 1308 lR~~i~iVpQdp~LF~g-TIr~NL~~~~--------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQ 1378 (1495)
T PLN03232 1308 LRRVLSIIPQSPVLFSG-TVRFNIDPFS--------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQ 1378 (1495)
T ss_pred HHhhcEEECCCCeeeCc-cHHHHcCCCC--------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHH
Confidence 24679999999999975 9999995421 12345688999999998877665543332 3579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|+|+++|+.. .+ ..||+|++|++|++++.|++++
T Consensus 1379 rlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~-ti-~~~DrIlVL~~G~ivE~Gt~~e 1455 (1495)
T PLN03232 1379 LLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN-TI-IDCDKILVLSSGQVLEYDSPQE 1455 (1495)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999874 4799999999874 44 4599999999999999999998
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
++.
T Consensus 1456 Ll~ 1458 (1495)
T PLN03232 1456 LLS 1458 (1495)
T ss_pred HHh
Confidence 764
No 326
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-38 Score=299.82 Aligned_cols=214 Identities=27% Similarity=0.392 Sum_probs=180.9
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---C
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---M 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---~ 179 (513)
.+.+.++|+++.+. ++++|+|+|+.|++||..+|+|||||||||||++|+|.++|++ |.+.+.|+... .
T Consensus 29 ~~li~l~~v~v~r~-----gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pss---g~~~~~G~~~G~~~~ 100 (257)
T COG1119 29 EPLIELKNVSVRRN-----GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSS---GDVTLLGRRFGKGET 100 (257)
T ss_pred cceEEecceEEEEC-----CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCC---CceeeeeeeccCCcc
Confidence 45799999999984 5689999999999999999999999999999999999999974 99999997632 1
Q ss_pred ---CCceEEEEcCC--cccCCCCCHHHHHHHHHH--hcCCC--chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCH
Q 010314 180 ---PYGSYGFVERE--TTLIGSLTVREYLYYSAL--LQLPG--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 180 ---~~~~~~yv~Q~--~~l~~~lTV~E~l~~~~~--~~~~~--~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSG 250 (513)
.++.||||... ..+.+..+|+|.+.-+.. ..... ..++..+++..+++.+|+.+++++..+ .||-
T Consensus 101 ~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~------~LS~ 174 (257)
T COG1119 101 IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG------SLSQ 174 (257)
T ss_pred hHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh------hcCH
Confidence 24679999643 344557788887743321 22221 113456778999999999999998776 9999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc--CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~--g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
||||||-|||||+.+|++||||||++|||...+..+++.|.+++.. +.++|+++||. +++-..+++++++++|++++
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceee
Confidence 9999999999999999999999999999999999999999999854 78899999998 68999999999999999998
Q ss_pred EeC
Q 010314 329 FGE 331 (513)
Q Consensus 329 ~G~ 331 (513)
.|-
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 873
No 327
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.3e-37 Score=285.12 Aligned_cols=223 Identities=23% Similarity=0.331 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEeccc----cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-
Q 010314 105 SVVWKDLTVTIKGKR----RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~- 179 (513)
.++++||+++|.... +....+++.|||++++|+.+||+|.||||||||.|+|+|.++|++ |+|++||+....
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTs---G~il~n~~~L~~~ 80 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS---GEILINDHPLHFG 80 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCC---ceEEECCcccccc
Confidence 578899999886442 223468999999999999999999999999999999999999986 999999987532
Q ss_pred ----CCceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHH
Q 010314 180 ----PYGSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGE 252 (513)
Q Consensus 180 ----~~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGq 252 (513)
+.+.+-+++|++ .+.|.+.+...|..+..+...-....+.+++.+.|+.+||- +.++- +|+.||-||
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~------~~~~la~~Q 154 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY------YPHMLAPGQ 154 (267)
T ss_pred chHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcccccc------chhhcCchh
Confidence 235678888875 68899999999988776654333345777899999999995 44443 677999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||++||||+.+|+|||.||...+||...+.++++++-+|.++ |.+.|.++.|. ..+.+++|.|+||++|++|++|+
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecCC
Confidence 99999999999999999999999999999999999999999865 99999977665 68999999999999999999999
Q ss_pred hHHHHH
Q 010314 332 TLACLQ 337 (513)
Q Consensus 332 ~~~~~~ 337 (513)
+.+++.
T Consensus 234 t~~v~a 239 (267)
T COG4167 234 TADVLA 239 (267)
T ss_pred hhhhhc
Confidence 998764
No 328
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.5e-37 Score=335.13 Aligned_cols=204 Identities=20% Similarity=0.254 Sum_probs=169.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..+.++||++.|. ++.+|+||||+|++||+++|+||||||||||+++|+|+++|++ |+|.+++. ..
T Consensus 323 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~---G~i~~~~~------~~ 388 (556)
T PRK11819 323 KVIEAENLSKSFG-----DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDS---GTIKIGET------VK 388 (556)
T ss_pred eEEEEEeEEEEEC-----CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCc------eE
Confidence 4699999999984 3469999999999999999999999999999999999999875 99999542 25
Q ss_pred EEEEcCCc-ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 184 YGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 184 ~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+||++|+. .+++.+||.||+.+........ .....+.++++.+++.+ ..++.+ .+|||||||||+|||+
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgG~~qrv~la~a 459 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVG---NREIPSRAYVGRFNFKGGDQQKKV------GVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhccccccc---ccHHHHHHHHHhCCCChhHhcCch------hhCCHHHHHHHHHHHH
Confidence 89999996 7888999999998754221111 11223567899999964 556654 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC-CeEE-EEeChHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTL-FFGETLA 334 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv-~~G~~~~ 334 (513)
|+.+|+||||||||+|||+.++..++++|+++. | |||+++|+. ..+..+||++++|++ |+++ +.|+.++
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 999999999999999999999999999999873 4 788877776 588899999999986 7876 4565544
No 329
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-37 Score=287.59 Aligned_cols=217 Identities=22% Similarity=0.322 Sum_probs=187.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EeCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEM--- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G-~~~~~--- 179 (513)
..|.++||+++|. +.++|+++||.+.+||+-+|||||||||||+|++|+|..+|+. |+|+++| .++..
T Consensus 4 ~iL~~~~vsVsF~-----GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~---G~v~f~g~~dl~~~~e 75 (249)
T COG4674 4 IILYLDGVSVSFG-----GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE---GEVLFDGDTDLTKLPE 75 (249)
T ss_pred ceEEEeceEEEEc-----ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCc---ceEEEcCchhhccCCH
Confidence 4789999999994 5679999999999999999999999999999999999999975 9999999 44322
Q ss_pred ---CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCC-------chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCC
Q 010314 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPG-------FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-------~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LS 249 (513)
.+..||--||.+..|..+||+|||..+.....+- ...+.+.+++++|...||.+.++...+ .||
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~------~LS 149 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA------LLS 149 (249)
T ss_pred HHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh------hhc
Confidence 1346888899999999999999998875432111 113445689999999999999988776 899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
-||||++.|++.|+.+|++|++|||++|+--....+.-++|+.|+. +++|+++-|+ +..+.+++|+|.+|++|.+...
T Consensus 150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHD-M~Fvr~~A~~VTVlh~G~VL~E 227 (249)
T COG4674 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHD-MGFVREIADKVTVLHEGSVLAE 227 (249)
T ss_pred cchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEecc-HHHHHHhhheeEEEeccceeec
Confidence 9999999999999999999999999999999999999999999974 5677775555 5799999999999999999999
Q ss_pred eChHHHH
Q 010314 330 GETLACL 336 (513)
Q Consensus 330 G~~~~~~ 336 (513)
|+.+++.
T Consensus 228 Gsld~v~ 234 (249)
T COG4674 228 GSLDEVQ 234 (249)
T ss_pred ccHHHhh
Confidence 9988764
No 330
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=7.7e-37 Score=335.42 Aligned_cols=204 Identities=18% Similarity=0.190 Sum_probs=169.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++|++++|++ .+.+|+|+|+++++|+.+||+||||||||||+++|+|+++|+. |+|.++|.+...
T Consensus 322 ~i~~~~v~f~y~~----~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~ 394 (547)
T PRK10522 322 TLELRNVTFAYQD----NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQS---GEILLDGKPVTAEQPED 394 (547)
T ss_pred eEEEEEEEEEeCC----CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEECCEECCCCCHHH
Confidence 6999999999962 2359999999999999999999999999999999999999975 999999987542
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.++.++|++|++.+|+. |++||- + ...++.++++++.+++.+..+.. .+......||||||||++||
T Consensus 395 ~~~~i~~v~q~~~lf~~-ti~~n~--------~---~~~~~~~~~~~~~~~l~~~~~~~-~~~~~G~~LSgGq~qRl~lA 461 (547)
T PRK10522 395 YRKLFSAVFTDFHLFDQ-LLGPEG--------K---PANPALVEKWLERLKMAHKLELE-DGRISNLKLSKGQKKRLALL 461 (547)
T ss_pred HhhheEEEecChhHHHH-hhcccc--------C---chHHHHHHHHHHHcCCchhhhcc-ccCCCCCCCCHHHHHHHHHH
Confidence 23579999999998864 787761 1 12345678889999987654421 11111358999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|||+.+|+|||||||||+||+.++..+++.|.++.+ .++|+|+++|++ .....||+|++|++|++++..
T Consensus 462 Ral~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 462 LALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999987653 589999999987 356789999999999998763
No 331
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.2e-36 Score=334.95 Aligned_cols=198 Identities=24% Similarity=0.272 Sum_probs=171.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++|+++.|.+ ..|+++||.+++||+++|+||||||||||+++|+|+++|+. |+|.++ ..
T Consensus 339 ~~l~~~~ls~~~~~------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~---G~I~~~--------~~ 401 (590)
T PRK13409 339 TLVEYPDLTKKLGD------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDE---GEVDPE--------LK 401 (590)
T ss_pred eEEEEcceEEEECC------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---eEEEEe--------ee
Confidence 46999999998842 35999999999999999999999999999999999999875 999985 24
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~ 263 (513)
++|++|+..+++.+||+|++.+.... .. ....+.++++.++|.+..++.+ ..|||||||||+|||+|+
T Consensus 402 i~y~~Q~~~~~~~~tv~e~l~~~~~~-~~-----~~~~~~~~L~~l~l~~~~~~~~------~~LSGGe~QRvaiAraL~ 469 (590)
T PRK13409 402 ISYKPQYIKPDYDGTVEDLLRSITDD-LG-----SSYYKSEIIKPLQLERLLDKNV------KDLSGGELQRVAIAACLS 469 (590)
T ss_pred EEEecccccCCCCCcHHHHHHHHhhh-cC-----hHHHHHHHHHHCCCHHHHhCCc------ccCCHHHHHHHHHHHHHh
Confidence 89999998888899999999764211 11 1235688999999998887755 499999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
.+|+||||||||+|||+.++..+.++|++++++ |+|||+++|+. ..+..+||++++|+ |++...|..
T Consensus 470 ~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 470 RDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-Ccceeeeec
Confidence 999999999999999999999999999999864 89999988886 57889999999996 588777763
No 332
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.4e-36 Score=333.50 Aligned_cols=203 Identities=21% Similarity=0.265 Sum_probs=168.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++|+++.|. ++.+|+|+||.|++|++++|+||||||||||+++|+|+++|++ |+|.+++. ..
T Consensus 321 ~~l~~~~l~~~~~-----~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~---G~i~~~~~------~~ 386 (552)
T TIGR03719 321 KVIEAENLSKGFG-----DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDS---GTIKIGET------VK 386 (552)
T ss_pred eEEEEeeEEEEEC-----CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---eEEEECCc------eE
Confidence 4699999999984 3469999999999999999999999999999999999999875 99999542 25
Q ss_pred EEEEcCCc-ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 184 YGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 184 ~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
++|++|+. .+++.+||.|++.+........ .....+.++++.+++.+ ..++.+ ..|||||||||+|||+
T Consensus 387 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~------~~LSgGe~qrv~la~a 457 (552)
T TIGR03719 387 LAYVDQSRDALDPNKTVWEEISGGLDIIQLG---KREVPSRAYVGRFNFKGSDQQKKV------GQLSGGERNRVHLAKT 457 (552)
T ss_pred EEEEeCCccccCCCCcHHHHHHhhccccccC---cchHHHHHHHHhCCCChhHhcCch------hhCCHHHHHHHHHHHH
Confidence 89999986 5788899999998753221111 11223567899999964 556654 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC-CeEE-EEeChH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN-GNTL-FFGETL 333 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~-G~iv-~~G~~~ 333 (513)
|+.+|+||||||||+|||+.++..++++|+++. + |||+++|+. ..+..+||++++|++ |+++ +.|+.+
T Consensus 458 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~ 527 (552)
T TIGR03719 458 LKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYS 527 (552)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHH
Confidence 999999999999999999999999999999873 3 788878876 578899999999986 5776 445543
No 333
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1e-36 Score=365.97 Aligned_cols=216 Identities=19% Similarity=0.236 Sum_probs=183.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..|+|+||+++|+.. ...+|+||||+|++||.+||+|+||||||||+++|.|+++|++ |+|++||.++..
T Consensus 1307 G~I~f~nVsf~Y~~~---~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~---G~I~IDG~di~~i~l~ 1380 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREG---LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCG---GEIRVNGREIGAYGLR 1380 (1560)
T ss_pred CeEEEEEEEEEeCCC---CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECCEEcccCCHH
Confidence 369999999999532 2359999999999999999999999999999999999999975 999999988643
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++||+|++.+|.. ||+|||... . ...++.+.++++.++|.++...+..|.+. ...||||||
T Consensus 1381 ~LR~~I~iVpQdp~LF~g-TIreNIdp~------~--~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQr 1451 (1560)
T PTZ00243 1381 ELRRQFSMIPQDPVLFDG-TVRQNVDPF------L--EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 (1560)
T ss_pred HHHhcceEECCCCccccc-cHHHHhCcc------c--CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHH
Confidence 24679999999999975 999999431 1 12346789999999998876655444332 257999999
Q ss_pred HHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 254 RRVRIARELVMR-PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 254 qRv~IAraL~~~-P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
||++|||||+.+ |+|||||||||+||+.+...|.+.|++.. .++|||+++|+.. ....||+|++|++|++++.|++
T Consensus 1452 QrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~G~VvE~Gt~ 1528 (1560)
T PTZ00243 1452 QLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDHGAVAEMGSP 1528 (1560)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEECCEEEEECCH
Confidence 999999999996 89999999999999999999999999864 4789999999873 4567999999999999999999
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
++++.
T Consensus 1529 ~eLl~ 1533 (1560)
T PTZ00243 1529 RELVM 1533 (1560)
T ss_pred HHHHh
Confidence 98764
No 334
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-37 Score=299.11 Aligned_cols=205 Identities=25% Similarity=0.345 Sum_probs=173.6
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----CceEEEEc-CCcccCCCC
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----YGSYGFVE-RETTLIGSL 197 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----~~~~~yv~-Q~~~l~~~l 197 (513)
..+++|+||.|++|++++++|+|||||||++|+|+|++.|++ |.|.++|...... .+.+++|+ |..++...+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~---G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdl 113 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS---GKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL 113 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCC---CeEEecCcCcchhHHHHHHHHHHHhhhhheeeeec
Confidence 458999999999999999999999999999999999999986 9999999764322 13566663 556677777
Q ss_pred CHHHHHHHHHHh-cCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010314 198 TVREYLYYSALL-QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (513)
Q Consensus 198 TV~E~l~~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs 276 (513)
.+.|.+...... ..|. ++-.++.+.+.+.++|++..+..+ +.||-|||.|+.||.+|+++|+||||||||-
T Consensus 114 p~~ds~~v~~~Iy~Ipd--~~F~~r~~~l~eiLdl~~~lk~~v------r~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 114 PALDSLEVLKLIYEIPD--DEFAERLDFLTEILDLEGFLKWPV------RKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hhhhhHHHHHHHHhCCH--HHHHHHHHHHHHHhcchhhhhhhh------hhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 777777554332 2333 345677888999999998887754 5999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHh
Q 010314 277 HLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (513)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (513)
|||..++..|.+.|++..+ ++.||++++|.. +.+..+||||++|+.|++++.|+..++...|
T Consensus 186 gLDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 186 GLDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred CcchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence 9999999999999999985 589999988876 5899999999999999999999998876654
No 335
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.1e-36 Score=366.19 Aligned_cols=216 Identities=20% Similarity=0.254 Sum_probs=184.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++|+|++++|+.. ...+|+||||+|++||.+||+|+||||||||+++|.|+++|++ |+|.+||.++..
T Consensus 1283 g~I~f~nVsf~Y~~~---~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~---G~I~IdG~dI~~i~~~ 1356 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED---LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE---GEIIIDGLNIAKIGLH 1356 (1522)
T ss_pred CcEEEEEEEEEeCCC---CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCC---CeEEECCEEccccCHH
Confidence 369999999999632 2369999999999999999999999999999999999999875 999999998643
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++||+|++.+|.. |++|||... . ...++.+.++++.+++.++.+++++|.+. ...||||||
T Consensus 1357 ~LR~~i~iVpQdp~LF~g-TIr~NLdp~-----~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957 1357 DLRFKITIIPQDPVLFSG-SLRMNLDPF-----S---QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred HHHhcCeEECCCCcccCc-cHHHHcCcc-----c---CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence 24579999999999976 999999521 1 12345688899999998877666554432 246999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|||+++|+.. ....||+|++|++|+++++|+++
T Consensus 1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~G~IvE~G~~~ 1504 (1522)
T TIGR00957 1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDKGEVAEFGAPS 1504 (1522)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998864 4789999999874 34569999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 1505 eLl~ 1508 (1522)
T TIGR00957 1505 NLLQ 1508 (1522)
T ss_pred HHHh
Confidence 8764
No 336
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=8.7e-37 Score=364.01 Aligned_cols=212 Identities=20% Similarity=0.313 Sum_probs=173.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEEC-CEeCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN-GAKSEM---- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~-G~~~~~---- 179 (513)
.++++||++.|+.+ ..+++|+|+||++++||++||+||||||||||+++|+|+++|+. |+|+++ |.+...
T Consensus 382 ~I~~~nVsf~Y~~~--~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~---G~I~i~~g~~i~~~~~~ 456 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR--KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTE---GDIIINDSHNLKDINLK 456 (1466)
T ss_pred cEEEEEEEEEcCCC--CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCC---CeEEEeCCcchhhCCHH
Confidence 69999999999642 23469999999999999999999999999999999999999975 999995 565421
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcC----------C------------------------------------
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQL----------P------------------------------------ 212 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~----------~------------------------------------ 212 (513)
.++.++||+|++.+|+ .||+|||.++..... +
T Consensus 457 ~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 535 (1466)
T PTZ00265 457 WWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELI 535 (1466)
T ss_pred HHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhh
Confidence 1356999999999997 499999988531000 0
Q ss_pred ----CchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010314 213 ----GFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (513)
Q Consensus 213 ----~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~ 283 (513)
......++.+.++++.+++.++.+.++.|. ..+..||||||||++|||||+.+|+|||||||||+||+.++
T Consensus 536 ~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se 615 (1466)
T PTZ00265 536 EMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSE 615 (1466)
T ss_pred hcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 000112456888999999988876554432 34578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCC
Q 010314 284 LLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (513)
Q Consensus 284 ~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (513)
..|.+.|+++.+ .|+|+|+++|+.. .+ +.||+|++|++|
T Consensus 616 ~~i~~~L~~~~~~~g~TvIiIsHrls-~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 616 YLVQKTINNLKGNENRITIIIAHRLS-TI-RYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCHH-HH-HhCCEEEEEeCC
Confidence 999999999975 5899999999874 44 689999999986
No 337
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.6e-36 Score=301.86 Aligned_cols=198 Identities=21% Similarity=0.216 Sum_probs=162.1
Q ss_pred eEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCC
Q 010314 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSE 178 (513)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~-----------i~G~~~~ 178 (513)
+|+++|.. .+.+|+|+| .+++|++++|+|||||||||||++|+|+++|+. |+|+ ++|.+..
T Consensus 5 ~~~~~y~~----~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~---G~I~~~~~~~~~~~~~~g~~~~ 76 (255)
T cd03236 5 EPVHRYGP----NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNL---GKFDDPPDWDEILDEFRGSELQ 76 (255)
T ss_pred CcceeecC----cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCC---ceEeeccccchhhhhccCchhh
Confidence 57777732 235899999 499999999999999999999999999999975 9996 7776542
Q ss_pred CC-------CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH
Q 010314 179 MP-------YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 179 ~~-------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG 251 (513)
.. ...++|++|...+++. ++.+++.+.. . . ......+.++++.+||.+..++.+ ..||||
T Consensus 77 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--~--~--~~~~~~~~~~l~~~gl~~~~~~~~------~~LS~G 143 (255)
T cd03236 77 NYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--K--K--KDERGKLDELVDQLELRHVLDRNI------DQLSGG 143 (255)
T ss_pred hhhHHhhhcccceeeecchhccCch-HHHHHHHHHh--c--h--hHHHHHHHHHHHHcCCchhhcCCh------hhCCHH
Confidence 11 1236899998888874 8888886642 1 1 123456789999999988777654 499999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||++|||+|+.+|+++||||||++||+.++..+.+.|++++++++|||+++|+. ..+..+||+|++|+ |++++.|
T Consensus 144 ~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 144 ELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL-AVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999999999999999987789999988876 57888999999995 6565543
No 338
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.4e-36 Score=359.94 Aligned_cols=215 Identities=19% Similarity=0.259 Sum_probs=182.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++|+||+++|+. ..+.+|+||||+|++||.+||+|+||||||||+++|+|+++ . +|+|++||.++..
T Consensus 1216 g~I~f~nVs~~Y~~---~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~---~G~I~IdG~di~~i~~~ 1288 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE---AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T---EGEIQIDGVSWNSVTLQ 1288 (1490)
T ss_pred CeEEEEEEEEEeCC---CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEcccCCHH
Confidence 36999999999963 23579999999999999999999999999999999999986 3 4999999988643
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
.++.++|+||++.+|+. ||+|||.... ...++.+.++++.++|.+....+++|.+. ...||||||
T Consensus 1289 ~lR~~is~IpQdp~LF~G-TIR~NLdp~~--------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQr 1359 (1490)
T TIGR01271 1289 TWRKAFGVIPQKVFIFSG-TFRKNLDPYE--------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1359 (1490)
T ss_pred HHHhceEEEeCCCccCcc-CHHHHhCccc--------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHH
Confidence 23579999999999975 9999994311 12356789999999998776665443332 246999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.+...|.+.|++.. .++|||+++|+.. ....||+|++|++|+++++|++.
T Consensus 1360 QrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~G~ivE~g~p~ 1436 (1490)
T TIGR01271 1360 QLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEGSSVKQYDSIQ 1436 (1490)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999864 4799999999873 34569999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 1437 ~Ll~ 1440 (1490)
T TIGR01271 1437 KLLN 1440 (1490)
T ss_pred HHHc
Confidence 8763
No 339
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-36 Score=332.58 Aligned_cols=203 Identities=21% Similarity=0.303 Sum_probs=170.5
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
...+.++||++.|. ++.+|+|+||.|.+|+++||+|||||||||||++|+|+++|++ |+|.+++. .
T Consensus 310 ~~~l~~~~l~~~y~-----~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~---G~i~~~~~------~ 375 (638)
T PRK10636 310 NPLLKMEKVSAGYG-----DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVS---GEIGLAKG------I 375 (638)
T ss_pred CceEEEEeeEEEeC-----CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEEECCC------E
Confidence 34699999999984 3469999999999999999999999999999999999999875 99999742 3
Q ss_pred eEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 183 SYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 183 ~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.+||++|+. .+.+..|+.+++.. .. + ......+.++|+.+++. +..++.++ .|||||||||+||
T Consensus 376 ~igy~~Q~~~~~l~~~~~~~~~~~~---~~-~---~~~~~~~~~~L~~~~l~~~~~~~~~~------~LSgGekqRl~La 442 (638)
T PRK10636 376 KLGYFAQHQLEFLRADESPLQHLAR---LA-P---QELEQKLRDYLGGFGFQGDKVTEETR------RFSGGEKARLVLA 442 (638)
T ss_pred EEEEecCcchhhCCccchHHHHHHH---hC-c---hhhHHHHHHHHHHcCCChhHhcCchh------hCCHHHHHHHHHH
Confidence 589999974 35566677776531 11 1 12345688999999996 46676554 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACL 336 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~ 336 (513)
++|+.+|+||||||||+|||+.++..+.++|+++ .| |||+++|+. ..+..+||++++|++|+++ +.|+.++..
T Consensus 443 ~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 443 LIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999999999999999999999999987 34 899988876 6788999999999999997 788887754
No 340
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=8.7e-36 Score=332.10 Aligned_cols=205 Identities=21% Similarity=0.277 Sum_probs=170.0
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
...+.++||++.|. .+.+|+|+||.|.+|++++|+|||||||||||++|+|+++|+. |+|.+ |.+ .
T Consensus 317 ~~~l~~~~l~~~~~-----~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~---G~i~~-~~~-----~ 382 (635)
T PRK11147 317 KIVFEMENVNYQID-----GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADS---GRIHC-GTK-----L 382 (635)
T ss_pred CceEEEeeeEEEEC-----CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---cEEEE-CCC-----c
Confidence 34699999999984 3469999999999999999999999999999999999999875 99998 432 2
Q ss_pred eEEEEcCCc-ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 183 SYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 183 ~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.+||++|+. .+++.+||.|++.+.... ... ......+.++++.+++. +..++.++ .|||||||||+||+
T Consensus 383 ~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~------~LSgGekqRl~la~ 453 (635)
T PRK11147 383 EVAYFDQHRAELDPEKTVMDNLAEGKQE-VMV--NGRPRHVLGYLQDFLFHPKRAMTPVK------ALSGGERNRLLLAR 453 (635)
T ss_pred EEEEEeCcccccCCCCCHHHHHHhhccc-ccc--cchHHHHHHHHHhcCCCHHHHhChhh------hCCHHHHHHHHHHH
Confidence 589999975 688999999999764321 100 11234578889999995 56676554 99999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe-CCeEEEE-eChHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS-NGNTLFF-GETLA 334 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~-~G~iv~~-G~~~~ 334 (513)
+|+.+|+||||||||+|||+.++..+.++|+++ +.|||+++|+. ..+..+||++++|+ +|+++.+ |+-++
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 999999999999999999999999999999876 45899988875 57889999999998 8998764 54443
No 341
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.5e-35 Score=270.19 Aligned_cols=144 Identities=28% Similarity=0.392 Sum_probs=130.9
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (513)
++++|+++.|. ...+++++||.+++||+++|+||||||||||+++|+|+++|.. |+|.++|. ..++
T Consensus 1 l~~~~l~~~~~-----~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~~~------~~i~ 66 (144)
T cd03221 1 IELENLSKTYG-----GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE---GIVTWGST------VKIG 66 (144)
T ss_pred CEEEEEEEEEC-----CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCc---eEEEECCe------EEEE
Confidence 46889999884 2369999999999999999999999999999999999999875 99999985 3588
Q ss_pred EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
|++| ||+||+||++|||||+.+
T Consensus 67 ~~~~----------------------------------------------------------lS~G~~~rv~laral~~~ 88 (144)
T cd03221 67 YFEQ----------------------------------------------------------LSGGEKMRLALAKLLLEN 88 (144)
T ss_pred EEcc----------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 8888 899999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 266 P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
|+++||||||+|||+.++..+.+.|+++ +.|+|+++|+. +++..+||++++|++|+
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999987 46899988876 57888999999999985
No 342
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.5e-35 Score=329.06 Aligned_cols=204 Identities=23% Similarity=0.351 Sum_probs=166.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++||++.|.+ .+.+|+|+||.|.+|++++|+|||||||||||++|+|+++|+. |+|.+++. ..
T Consensus 507 ~~L~~~~ls~~y~~----~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~---G~I~~~~~------~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPG----GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSS---GTVFRSAK------VR 573 (718)
T ss_pred ceEEEEeeEEEeCC----CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC---ceEEECCc------ee
Confidence 46999999999842 2359999999999999999999999999999999999999875 99998752 35
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
++|++|+. +..+++.++..+......+. ...+.+.++++.+++.+ ..++. +..|||||||||+|||+|
T Consensus 574 igyv~Q~~--~~~l~~~~~~~~~~~~~~~~---~~~~~i~~~L~~~gl~~~~~~~~------~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 574 MAVFSQHH--VDGLDLSSNPLLYMMRCFPG---VPEQKLRAHLGSFGVTGNLALQP------MYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEEeccc--cccCCcchhHHHHHHHhcCC---CCHHHHHHHHHHCCCChHHhcCC------ccccCHHHHHHHHHHHHH
Confidence 89999975 34456666643321111111 12356788999999974 55654 459999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLAC 335 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~ 335 (513)
+.+|+||||||||+|||+.++..+++.|++. .| |||+++|+. ..+..+||++++|++|+++ +.|+.++.
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999999998888765 34 899988876 5788999999999999998 67876654
No 343
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=279.01 Aligned_cols=216 Identities=20% Similarity=0.278 Sum_probs=177.7
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
+.+.|+.+.|..+....+++|+++|+++..|+++.|+|.||||||||+++|+|.+++++ |+|.++|.++...
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~---G~I~Idg~dVtk~~~~~R 78 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS---GQILIDGVDVTKKSVAKR 78 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCC---ceEEECceecccCCHHHH
Confidence 45677777776554456789999999999999999999999999999999999999986 9999999886432
Q ss_pred CceEEEEcCCc--ccCCCCCHHHHHHHHHHhcC----CCc-hhhHHHHHHHHHHHcC--ChhHHhhhhcCCCCCCCCCHH
Q 010314 181 YGSYGFVERET--TLIGSLTVREYLYYSALLQL----PGF-FCQRKNVVEDAIHAMS--LSDYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 181 ~~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~----~~~-~~~~~~~v~~~l~~~~--L~~~~~~~vg~~~~~~~LSGG 251 (513)
...++-|+|++ ..++.+|++||+..+..... ... ....++...+-+..++ |++..++.++ -||||
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig------lLSGG 152 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG------LLSGG 152 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh------hccch
Confidence 13467789986 67899999999988754311 110 1223344455566654 5677777776 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|||-|+++.|-++.|+||+|||-|++|||.++..|+++-.++.++ +.|.+++||+. .++..+-+|.++|++|+||.+-
T Consensus 153 QRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 153 QRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCeEEEEeCCeEEEEc
Confidence 999999999999999999999999999999999999999999754 78999988886 5889999999999999999864
Q ss_pred C
Q 010314 331 E 331 (513)
Q Consensus 331 ~ 331 (513)
.
T Consensus 232 ~ 232 (263)
T COG1101 232 T 232 (263)
T ss_pred c
Confidence 3
No 344
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.2e-35 Score=329.66 Aligned_cols=201 Identities=18% Similarity=0.255 Sum_probs=163.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++|+++.|++ ++.+|+|+|+++++||+++|+||||||||||+++|+|++++++ |+|.+++ ++.
T Consensus 450 ~~i~~~nv~~~~~~----~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~---G~i~~~~------~~~ 516 (659)
T TIGR00954 450 NGIKFENIPLVTPN----GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYG---GRLTKPA------KGK 516 (659)
T ss_pred CeEEEEeeEEECCC----CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CeEeecC------CCc
Confidence 35899999998852 3469999999999999999999999999999999999998875 9998864 346
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhc---CCCCCCCCCHHHHHHHHHHH
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG---GHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg---~~~~~~~LSGGqrqRv~IAr 260 (513)
++|++|++.+++. |++||+.++............++.+.++++.+++.+..++..| -...+..||||||||++|||
T Consensus 517 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iAR 595 (659)
T TIGR00954 517 LFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMAR 595 (659)
T ss_pred EEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHH
Confidence 9999999998877 9999997753211000001224567889999999887766321 01134689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
||+.+|++|||||||+|||+.++..+.+.+++ .|+|+|+++|+.. ..+.||++++|+.
T Consensus 596 al~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~--~~~~~d~il~l~~ 653 (659)
T TIGR00954 596 LFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKS--LWKYHEYLLYMDG 653 (659)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchH--HHHhCCEEEEEeC
Confidence 99999999999999999999999999998876 3889999999874 3578999999963
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-35 Score=324.45 Aligned_cols=204 Identities=20% Similarity=0.320 Sum_probs=162.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (513)
|.++||+++|. .+.+|+||||.|.+|+++||+||||||||||||+|+|+++|++ |+|.++|. ..++
T Consensus 2 i~i~nls~~~g-----~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~---G~I~~~~~------~~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRG-----VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADG---GSYTFPGN------WQLA 67 (638)
T ss_pred EEEEEEEEEeC-----CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEecCC------CEEE
Confidence 78999999994 4579999999999999999999999999999999999998875 99999874 2478
Q ss_pred EEcCCcccCCCCCHHHHHHHHH-----------------------Hhc--CC-CchhhHHHHHHHHHHHcCCh-hHHhhh
Q 010314 186 FVERETTLIGSLTVREYLYYSA-----------------------LLQ--LP-GFFCQRKNVVEDAIHAMSLS-DYANKL 238 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~-----------------------~~~--~~-~~~~~~~~~v~~~l~~~~L~-~~~~~~ 238 (513)
|++|+...+ ..|+.+.+.-.. .+. .. ........++.++++.+|+. +..++.
T Consensus 68 ~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 68 WVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred EEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 888864333 245555442110 000 00 00012245688899999996 566775
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEE
Q 010314 239 IGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 318 (513)
Q Consensus 239 vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v 318 (513)
++ .|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||+++|+. ..+..+||++
T Consensus 147 ~~------~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~-~~l~~~~d~i 216 (638)
T PRK10636 147 VS------DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDR-DFLDPIVDKI 216 (638)
T ss_pred hh------hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHHhcCEE
Confidence 54 99999999999999999999999999999999999999999998875 46899988876 5788999999
Q ss_pred EEEeCCeEE-EEeChHH
Q 010314 319 CLLSNGNTL-FFGETLA 334 (513)
Q Consensus 319 ~vL~~G~iv-~~G~~~~ 334 (513)
++|++|+++ +.|+.+.
T Consensus 217 ~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 217 IHIEQQSLFEYTGNYSS 233 (638)
T ss_pred EEEeCCEEEEecCCHHH
Confidence 999999996 5676554
No 346
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.7e-34 Score=277.39 Aligned_cols=219 Identities=20% Similarity=0.238 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEecc-------------------ccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCC
Q 010314 105 SVVWKDLTVTIKGK-------------------RRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSAR 165 (513)
Q Consensus 105 ~l~~~~ls~~~~~~-------------------~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~ 165 (513)
.+.++||++.|.-. +.....+|+||||++++||.+||+|+||||||||||+|+|.++|++
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~- 81 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS- 81 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC-
Confidence 57788888777521 1123479999999999999999999999999999999999999985
Q ss_pred ceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCC
Q 010314 166 MYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245 (513)
Q Consensus 166 ~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~ 245 (513)
|+|.++|+-... ..-...+.|.+|.+||+.+-+.+. .-...+.+++++++++..+|.++.+.++.
T Consensus 82 --G~v~v~G~v~~l-------i~lg~Gf~pelTGreNi~l~~~~~-G~~~~ei~~~~~eIieFaELG~fi~~Pvk----- 146 (249)
T COG1134 82 --GKVKVTGKVAPL-------IELGAGFDPELTGRENIYLRGLIL-GLTRKEIDEKVDEIIEFAELGDFIDQPVK----- 146 (249)
T ss_pred --ceEEEcceEehh-------hhcccCCCcccchHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHHHHHhhCchh-----
Confidence 999999974211 111234668899999998765442 12235678889999999999999998665
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
.+|.||+-|++.|.|...+|+|||+||-.+-.|+.-++.-.+.+.++.+++.|||+++|++ ..+.++||++++|++|+
T Consensus 147 -tYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G~ 224 (249)
T COG1134 147 -TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEHGQ 224 (249)
T ss_pred -hccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhcCeeEEEeCCE
Confidence 9999999999999999999999999999999999999999999999988889999988887 58999999999999999
Q ss_pred EEEEeChHHHHHHhHh
Q 010314 326 TLFFGETLACLQHFSN 341 (513)
Q Consensus 326 iv~~G~~~~~~~~f~~ 341 (513)
+.+.|+++++.+++..
T Consensus 225 i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 225 IRMEGSPEEVIPAYEE 240 (249)
T ss_pred EEEcCCHHHHHHHHHH
Confidence 9999999999887654
No 347
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.4e-35 Score=276.21 Aligned_cols=157 Identities=19% Similarity=0.224 Sum_probs=129.9
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHH
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
.+.+|+|+||++++|++++|+|||||||||||++|.+ . +|+|.++|.........++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~---~G~v~~~~~~~~~~~~~~~~~~q------------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A---SGKARLISFLPKFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c---CCcEEECCcccccccccEEEEhH------------
Confidence 3468999999999999999999999999999999964 2 49999988632222234677765
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR--PHVLFIDEPLYHL 278 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~--P~iLllDEPTsgL 278 (513)
.++++.++|... .++ .+..||||||||++|||||+.+ |++|||||||+||
T Consensus 68 ---------------------~~~l~~~~L~~~~~~~------~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 68 ---------------------LQFLIDVGLGYLTLGQ------KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred ---------------------HHHHHHcCCCccccCC------CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccC
Confidence 235677787643 444 3459999999999999999999 9999999999999
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 279 DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 279 D~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|+.++..+.+.|+++++.|+|||+++|++. .+ ..||++++|.+|+.
T Consensus 121 D~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 121 HQQDINQLLEVIKGLIDLGNTVILIEHNLD-VL-SSADWIIDFGPGSG 166 (176)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEECCCCC
Confidence 999999999999999877999999998874 44 67999999966443
No 348
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.2e-35 Score=274.64 Aligned_cols=153 Identities=23% Similarity=0.255 Sum_probs=132.9
Q ss_pred EeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEc
Q 010314 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVE 188 (513)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~ 188 (513)
.||++.|. .+.+++++ +.+++||+++|+||||||||||+|+|+|+++|++ |+|.++|.. ++|++
T Consensus 4 ~~l~~~~~-----~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~-------i~~~~ 67 (177)
T cd03222 4 PDCVKRYG-----VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG---DNDEWDGIT-------PVYKP 67 (177)
T ss_pred CCeEEEEC-----CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCC---cEEEECCEE-------EEEEc
Confidence 57888883 34688884 8999999999999999999999999999999975 999999853 67887
Q ss_pred CCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 010314 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHV 268 (513)
Q Consensus 189 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~i 268 (513)
|+.. ||||||||++|||+|+.+|++
T Consensus 68 q~~~-------------------------------------------------------LSgGq~qrv~laral~~~p~l 92 (177)
T cd03222 68 QYID-------------------------------------------------------LSGGELQRVAIAAALLRNATF 92 (177)
T ss_pred ccCC-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 7432 899999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE--eChH
Q 010314 269 LFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTINQSSTEVFGLFDRICLLSNGNTLFF--GETL 333 (513)
Q Consensus 269 LllDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~--G~~~ 333 (513)
++|||||+|||+.++..+.+.|+++++++ .|||+++|+. ..+..+||++++|+++-.++. |.|.
T Consensus 93 llLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 93 YLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCc
Confidence 99999999999999999999999998764 8999988886 578889999999998766543 5544
No 349
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.4e-35 Score=350.37 Aligned_cols=209 Identities=24% Similarity=0.304 Sum_probs=173.8
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.++++|+++.|+.. ..+.+|+|+|+++++|+.++|+||||||||||+++|+|.++|.. |.+.. .++.+
T Consensus 614 ~I~~~~vsF~y~~~--~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~---G~i~~-------~~~~I 681 (1495)
T PLN03232 614 AISIKNGYFSWDSK--TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAE---TSSVV-------IRGSV 681 (1495)
T ss_pred cEEEEeeEEEcCCC--CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccC---CCEEE-------ecCcE
Confidence 68999999999632 23469999999999999999999999999999999999999864 65531 13469
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHHHHHHHH
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERRRVRIA 259 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqrqRv~IA 259 (513)
+||+|++.+|. .||+|||.|+. + ..+++++++++..+|.+..+.+++|+.. ...||||||||++||
T Consensus 682 ayv~Q~p~Lf~-gTIreNI~fg~----~----~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLA 752 (1495)
T PLN03232 682 AYVPQVSWIFN-ATVRENILFGS----D----FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMA 752 (1495)
T ss_pred EEEcCcccccc-ccHHHHhhcCC----c----cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHH
Confidence 99999999996 59999998752 1 1245688889999998766666655433 346999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|||..+|+|+|||||||+||+.++..+++. ++.+ .+++|+|+++|+.. ....||+|++|++|++++.|+.+++..
T Consensus 753 RAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 753 RAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999999999999988765 4443 36789999999973 467799999999999999999888753
No 350
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.7e-35 Score=349.87 Aligned_cols=208 Identities=24% Similarity=0.331 Sum_probs=175.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCce-eEEEECCEeCCCCCce
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMY-GEVFVNGAKSEMPYGS 183 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~-G~I~i~G~~~~~~~~~ 183 (513)
.++++|+++.|+.. ..+.+|+|+|+.+++|++++|+||||||||||+++|+|.+++. + |+|.+. +.
T Consensus 614 ~I~~~nvsf~y~~~--~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~---~GG~I~l~--------~~ 680 (1622)
T PLN03130 614 AISIKNGYFSWDSK--AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR---SDASVVIR--------GT 680 (1622)
T ss_pred ceEEEeeEEEccCC--CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC---CCceEEEc--------Ce
Confidence 58999999999632 2346999999999999999999999999999999999999885 6 899864 35
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHHHHHHH
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGERRRVRI 258 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqrqRv~I 258 (513)
++||+|++.+|. .||+|||.|+. + ..+++++++++..+|.+..+.++.|+.. ...|||||||||+|
T Consensus 681 Iayv~Q~p~Lfn-gTIreNI~fg~----~----~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaL 751 (1622)
T PLN03130 681 VAYVPQVSWIFN-ATVRDNILFGS----P----FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSM 751 (1622)
T ss_pred EEEEcCccccCC-CCHHHHHhCCC----c----ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHH
Confidence 899999999996 59999998752 1 1246688899999998777666554433 34699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||||..+|+|+|||||||+||+.+.+.+++ .++.+. .++|+|+++|+. .....||+|++|++|++++.|+.+++..
T Consensus 752 ARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 752 ARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQL--HFLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCH--hHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999999999998865 555543 589999999997 3567899999999999999999888753
No 351
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.2e-34 Score=320.88 Aligned_cols=205 Identities=20% Similarity=0.260 Sum_probs=160.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.|.++||+++|. .+.+|+||||.|.+|+++||+|||||||||||++|+|+++|++ |+|.++|. ..+
T Consensus 3 ~l~i~~ls~~~~-----~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~---G~I~~~~~------~~~ 68 (635)
T PRK11147 3 LISIHGAWLSFS-----DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDD---GRIIYEQD------LIV 68 (635)
T ss_pred EEEEeeEEEEeC-----CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCC---eEEEeCCC------CEE
Confidence 589999999994 3569999999999999999999999999999999999999875 99999863 135
Q ss_pred EEEcCCcccCCCCCHHHHHHHH------------------------------HHhc--CCC-chhhHHHHHHHHHHHcCC
Q 010314 185 GFVERETTLIGSLTVREYLYYS------------------------------ALLQ--LPG-FFCQRKNVVEDAIHAMSL 231 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~------------------------------~~~~--~~~-~~~~~~~~v~~~l~~~~L 231 (513)
+|++|.+......+|.+++..+ ..+. ... .......++.++++.+|+
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 148 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGL 148 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCC
Confidence 7777754333334555543210 0000 000 001224567889999998
Q ss_pred hhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHH
Q 010314 232 SDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV 311 (513)
Q Consensus 232 ~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i 311 (513)
.. ++. +..|||||||||+|||+|+.+|+||||||||+|||+.++..+.++|+++. .|||+++|+. ..+
T Consensus 149 ~~--~~~------~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~-~~l 216 (635)
T PRK11147 149 DP--DAA------LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDR-SFI 216 (635)
T ss_pred CC--CCc------hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCH-HHH
Confidence 62 443 45999999999999999999999999999999999999999999999873 4888888776 578
Q ss_pred HhcCCEEEEEeCCeEEE-EeChHHH
Q 010314 312 FGLFDRICLLSNGNTLF-FGETLAC 335 (513)
Q Consensus 312 ~~~~D~v~vL~~G~iv~-~G~~~~~ 335 (513)
..+||+|++|++|+++. .|+.++.
T Consensus 217 ~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 217 RNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred HHhcCeEEEEECCEEEEecCCHHHH
Confidence 89999999999999974 5776543
No 352
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=3.2e-35 Score=337.07 Aligned_cols=223 Identities=22% Similarity=0.338 Sum_probs=198.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..+..+++++.|.... .+++++|+.|++||+.|++|+|||||||++++|.|..+|++ |+++++|.+...
T Consensus 563 ~~~~~~~L~k~y~~~~----~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~---G~a~i~g~~i~~~~~~ 635 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKD----GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTS---GEALIKGHDITVSTDF 635 (885)
T ss_pred ceEEEcceeeeecchh----hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCc---ceEEEecCccccccch
Confidence 4689999999985321 19999999999999999999999999999999999999985 999999976532
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.++.+|||||.+.+++.+|.+|++.+.++++.-.. .+..+.++.+++.++|.+.+++.++ .+|||+|+|++
T Consensus 636 ~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~-~di~~~v~~ll~~~~L~~~~~~~~~------~ySgG~kRkLs 708 (885)
T KOG0059|consen 636 QQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPR-SDIGSAIEKLLRLVGLGPYANKQVR------TYSGGNKRRLS 708 (885)
T ss_pred hhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHcCChhhhccchh------hCCCcchhhHH
Confidence 24569999999999999999999999888764221 2455669999999999999999776 99999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
+|.||+.+|++++|||||+|+||.+++.+++++++++++|+.||+|+|.. +++..+|||+.+|.+|++.-.|+++++..
T Consensus 709 ~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 709 FAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 99999999999999999999999999999999999998888999977765 79999999999999999999999999887
Q ss_pred HhHh
Q 010314 338 HFSN 341 (513)
Q Consensus 338 ~f~~ 341 (513)
+|-.
T Consensus 788 rfG~ 791 (885)
T KOG0059|consen 788 RYGS 791 (885)
T ss_pred hcCC
Confidence 6654
No 353
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-35 Score=266.90 Aligned_cols=216 Identities=24% Similarity=0.322 Sum_probs=170.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe---CC--
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK---SE-- 178 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~---~~-- 178 (513)
+.+.+.++++.|. ..+-.+||||.+.|||+++|+|+|||||||||+||++.+.|+. |+|.+.-.. ..
T Consensus 5 PLL~V~~lsk~Yg-----~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~---G~v~Y~~r~~~~~dl~ 76 (258)
T COG4107 5 PLLSVSGLSKLYG-----PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA---GTVTYRMRDGQPRDLY 76 (258)
T ss_pred cceeehhhhhhhC-----CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCC---CeEEEEcCCCCchhHh
Confidence 4688999999884 3457899999999999999999999999999999999999986 999886432 11
Q ss_pred ---C------CCceEEEEcCCcc--cCCCCC----HHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC
Q 010314 179 ---M------PYGSYGFVERETT--LIGSLT----VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC 243 (513)
Q Consensus 179 ---~------~~~~~~yv~Q~~~--l~~~lT----V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~ 243 (513)
. .+...|||.|++. +-...+ +.|-++-.. .......++...++|+.++++..+ . ++
T Consensus 77 ~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G----~RHYG~iR~~a~~WL~~VEI~~~R--i---DD 147 (258)
T COG4107 77 TMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG----ARHYGNIRAEAQDWLEEVEIDLDR--I---DD 147 (258)
T ss_pred hhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhh----hhhhhhHHHHHHHHHHhcccCccc--c---cC
Confidence 0 0124699999863 322223 334332111 111124556678899999886422 1 34
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 244 YMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
.|+.+||||+||+.|||-|++.|+++||||||.|||...+..++++++.|..+ |.++|+++|+. ..+.-++||.++|+
T Consensus 148 ~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk 226 (258)
T COG4107 148 LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMK 226 (258)
T ss_pred cccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeec
Confidence 67899999999999999999999999999999999999999999999999854 99999988876 56777899999999
Q ss_pred CCeEEEEeChHHHHH
Q 010314 323 NGNTLFFGETLACLQ 337 (513)
Q Consensus 323 ~G~iv~~G~~~~~~~ 337 (513)
+|++++.|-++.+++
T Consensus 227 ~g~vve~GLTDrvLD 241 (258)
T COG4107 227 QGQVVESGLTDRVLD 241 (258)
T ss_pred CCCEecccccccccc
Confidence 999999998877654
No 354
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-35 Score=302.82 Aligned_cols=216 Identities=24% Similarity=0.343 Sum_probs=175.1
Q ss_pred CCceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--
Q 010314 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-- 179 (513)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-- 179 (513)
.+..++|+|++|.|. .++++|+||||++.||+.+||+||||+||||+|++|..+.... +|.|.++|+++..
T Consensus 534 ~~G~i~fsnvtF~Y~----p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt 606 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYD----PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVT 606 (790)
T ss_pred cCCeEEEEEeEEecC----CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHH
Confidence 345799999999996 4678999999999999999999999999999999999998765 4999999988532
Q ss_pred ---CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHH-------cCChhHHhhhhcCCCCCCCCC
Q 010314 180 ---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHA-------MSLSDYANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~-------~~L~~~~~~~vg~~~~~~~LS 249 (513)
.+..||.||||..+|.+ |+..|+.|+. +. ...+.|.++.+. ++..+-.++.+| +..-.||
T Consensus 607 ~~SLRs~IGVVPQDtvLFNd-TI~yNIryak----~~---AsneevyaAAkAA~IHdrIl~fPegY~t~VG--ERGLkLS 676 (790)
T KOG0056|consen 607 QSSLRSSIGVVPQDTVLFND-TILYNIRYAK----PS---ASNEEVYAAAKAAQIHDRILQFPEGYNTRVG--ERGLKLS 676 (790)
T ss_pred HHHHHHhcCcccCcceeecc-eeeeheeecC----CC---CChHHHHHHHHHhhHHHHHhcCchhhhhhhh--hcccccC
Confidence 23579999999999965 9999997752 22 112233333333 344444556665 2334699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
|||||||+|||+++.+|.|++|||.||+||..+.+.|-..|.+++.. +|.|++.|..+. .-.+|.|+++++|+|++.
T Consensus 677 GGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~-RTtIVvAHRLST--ivnAD~ILvi~~G~IvEr 753 (790)
T KOG0056|consen 677 GGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCAN-RTTIVVAHRLST--IVNADLILVISNGRIVER 753 (790)
T ss_pred CcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcC-CceEEEeeeehh--eecccEEEEEeCCeEeec
Confidence 99999999999999999999999999999999999999999999864 455555888753 345999999999999999
Q ss_pred eChHHHHH
Q 010314 330 GETLACLQ 337 (513)
Q Consensus 330 G~~~~~~~ 337 (513)
|.-+|++.
T Consensus 754 G~HeeLl~ 761 (790)
T KOG0056|consen 754 GRHEELLK 761 (790)
T ss_pred CcHHHHHh
Confidence 99888764
No 355
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.1e-35 Score=259.38 Aligned_cols=191 Identities=23% Similarity=0.346 Sum_probs=163.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.+.++|++... .+.-+|-+||++|.+||++-||||||||||||+..+.|.+.+.-..+|++++|++.... ..
T Consensus 2 ~l~l~nvsl~l-----~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~q 76 (213)
T COG4136 2 MLCLKNVSLRL-----PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76 (213)
T ss_pred ceeeeeeeecC-----CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhh
Confidence 47889998765 34568999999999999999999999999999999999998876679999999987543 35
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+++|.++|++.+||+++|.+||.|+.--.+.. ..+++.+..+|++.||.+..++- |..||||||-||++-|+
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG--~aRr~~a~aAL~~~gL~g~f~~d------P~tlSGGQrARvaL~R~ 148 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKG--NARRNAANAALERSGLDGAFHQD------PATLSGGQRARVALLRA 148 (213)
T ss_pred hheeeeecccccccccccccceEEecCccccc--HHHHhhHHHHHHHhccchhhhcC------hhhcCcchHHHHHHHHH
Confidence 78999999999999999999998764322222 35667789999999999988874 45999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCeEEEEEeCCh
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKK-LASTGCTLLFTINQSS 308 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvi~t~h~~~ 308 (513)
|+..|+.++||||+|.||..-+.++.+.+-. ++..|..+|.++|+..
T Consensus 149 Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~ 196 (213)
T COG4136 149 LLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196 (213)
T ss_pred HHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence 9999999999999999999999999988754 4556988888888863
No 356
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5e-34 Score=343.14 Aligned_cols=208 Identities=20% Similarity=0.259 Sum_probs=171.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.++++|+++.|++. .+.+|+|+|+.+++|++++|+||||||||||+++|+|+++|.. |+|.++| .+
T Consensus 636 ~i~~~~~~~~~~~~---~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~---G~i~~~g--------~i 701 (1522)
T TIGR00957 636 SITVHNATFTWARD---LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE---GHVHMKG--------SV 701 (1522)
T ss_pred cEEEEEeEEEcCCC---CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCC---cEEEECC--------EE
Confidence 69999999998531 2469999999999999999999999999999999999999875 9999987 48
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHHHHHHHH
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRIA 259 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqrqRv~IA 259 (513)
+||+|++.++ +.||+||+.++.. . ..++.+++++..++.+..+....|+ ..+..||||||||++||
T Consensus 702 ~yv~Q~~~l~-~~Ti~eNI~~g~~----~----~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLA 772 (1522)
T TIGR00957 702 AYVPQQAWIQ-NDSLRENILFGKA----L----NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 772 (1522)
T ss_pred EEEcCCcccc-CCcHHHHhhcCCc----c----CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHH
Confidence 9999999887 4699999987421 1 1233455666666655444433222 34578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA--STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~--~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|||+.+|+|+|||||||+||+.++..+++.+.+.. .+++|+|+++|+.. .+ ..||+|++|++|++++.|+.+++..
T Consensus 773 RAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~-~l-~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 773 RAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS-YL-PQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh-hh-hhCCEEEEecCCeEEeeCCHHHHHh
Confidence 99999999999999999999999999999997542 35789999999874 44 5599999999999999999888753
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4.1e-34 Score=314.88 Aligned_cols=189 Identities=22% Similarity=0.247 Sum_probs=155.3
Q ss_pred eEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCC
Q 010314 110 DLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSE 178 (513)
Q Consensus 110 ~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~-----------i~G~~~~ 178 (513)
++++.|. ....+|++++ .+++|+++||+||||||||||+|+|+|+++|+. |+|. ++|.+..
T Consensus 78 ~~~~~yg----~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~---G~i~~~~~~~~~~~~~~G~~l~ 149 (590)
T PRK13409 78 EPVHRYG----VNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNL---GDYEEEPSWDEVLKRFRGTELQ 149 (590)
T ss_pred CceEEec----CCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCC---ccccCCCcHHHHHHHhCChHHH
Confidence 3666663 1235899999 899999999999999999999999999999975 9997 8887532
Q ss_pred C-------CCceEEEEcCCcccCCC---CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCC
Q 010314 179 M-------PYGSYGFVERETTLIGS---LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (513)
Q Consensus 179 ~-------~~~~~~yv~Q~~~l~~~---lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~L 248 (513)
. ....+++.+|....+|. .||.|++... +..+.++++++.++|.+..++.++ +|
T Consensus 150 ~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~------~L 213 (590)
T PRK13409 150 NYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV----------DERGKLDEVVERLGLENILDRDIS------EL 213 (590)
T ss_pred HHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh----------hHHHHHHHHHHHcCCchhhcCChh------hC
Confidence 1 11234555554333332 3999998531 223568899999999988888665 99
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCC
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (513)
||||||||+||++|+.+|+||||||||++||+.++..+.+.|+++++ |.|||+++|+. ..+..+||+|++|+++
T Consensus 214 SgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 214 SGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999988 99999988886 5788999999999864
No 358
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-33 Score=259.02 Aligned_cols=151 Identities=32% Similarity=0.522 Sum_probs=132.7
Q ss_pred EEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----Cc
Q 010314 108 WKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YG 182 (513)
Q Consensus 108 ~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~ 182 (513)
++|+++.|.+ +.+++++|+.+.+|++++|+|+||||||||+++|+|++++.. |+|.++|.+.... .+
T Consensus 2 ~~~~~~~~~~-----~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~---G~i~~~~~~~~~~~~~~~~~ 73 (157)
T cd00267 2 IENLSFRYGG-----RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTS---GEILIDGKDIAKLPLEELRR 73 (157)
T ss_pred eEEEEEEeCC-----eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc---cEEEECCEEcccCCHHHHHh
Confidence 6788888842 369999999999999999999999999999999999998874 9999999764321 13
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++| |||||+||++||++|
T Consensus 74 ~i~~~~q----------------------------------------------------------lS~G~~~r~~l~~~l 95 (157)
T cd00267 74 RIGYVPQ----------------------------------------------------------LSGGQRQRVALARAL 95 (157)
T ss_pred ceEEEee----------------------------------------------------------CCHHHHHHHHHHHHH
Confidence 4566655 899999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
+.+|++++|||||+|||..++..+.+.|+++.+.++|+|+++|+. ..+..+||++++|++|+
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999999999987678999988886 57888899999999875
No 359
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.1e-33 Score=334.45 Aligned_cols=203 Identities=22% Similarity=0.313 Sum_probs=164.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.++++|+++. .+.+|+|+|+.+++|++++|+|||||||||||++|+|+++|.. |+|.++| .+
T Consensus 428 ~~~~~~~s~~-------~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~---G~i~~~g--------~i 489 (1490)
T TIGR01271 428 GLFFSNFSLY-------VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSE---GKIKHSG--------RI 489 (1490)
T ss_pred cccccccccc-------cCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---ceEEECC--------EE
Confidence 3556666543 2359999999999999999999999999999999999999875 9999987 38
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHHHHHHHH
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRIA 259 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqrqRv~IA 259 (513)
+||+|++.+++. ||+||+.|+... . ..+.+++++..+|.+..+....|+ ..+..|||||||||+||
T Consensus 490 ayv~Q~~~l~~~-Ti~eNI~~g~~~----~----~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lA 560 (1490)
T TIGR01271 490 SFSPQTSWIMPG-TIKDNIIFGLSY----D----EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLA 560 (1490)
T ss_pred EEEeCCCccCCc-cHHHHHHhcccc----c----hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHH
Confidence 999999999875 999999875311 1 122444555556655444333222 23568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|||+.+|+|+||||||+|||+.++..+++. ++.+. +|+|+|+++|++. .+ ..||+|++|++|+++..|+.+++..
T Consensus 561 RAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~-~~-~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 561 RAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLE-HL-KKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChH-HH-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999985 56664 4899999999974 44 5699999999999999999888753
No 360
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=260.27 Aligned_cols=186 Identities=24% Similarity=0.319 Sum_probs=160.1
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY---- 181 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~---- 181 (513)
++.+||+..- ..+.++.++||++.+||++-|.||||||||||||+|+|+.+|++ |+|.++|.++....
T Consensus 3 L~a~~L~~~R-----~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~---G~v~~~~~~i~~~~~~~~ 74 (209)
T COG4133 3 LEAENLSCER-----GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDA---GEVYWQGEPIQNVRESYH 74 (209)
T ss_pred chhhhhhhcc-----CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCC---CeEEecCCCCccchhhHH
Confidence 4566776543 45689999999999999999999999999999999999999986 99999997754322
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.+-|+-..+.+=+.+||.|||.|-..+... .....+.++++.+||.++.|..++ .||-||||||+|||-
T Consensus 75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~----~~~~~i~~Al~~vgL~g~~dlp~~------~LSAGQqRRvAlArL 144 (209)
T COG4133 75 QALLYLGHQPGIKTELTALENLHFWQRFHGS----GNAATIWEALAQVGLAGLEDLPVG------QLSAGQQRRVALARL 144 (209)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHhCC----CchhhHHHHHHHcCcccccccchh------hcchhHHHHHHHHHH
Confidence 3466787888888999999999886544322 123568899999999999988776 999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (513)
++..+++.|||||+++||......+-.++..-+.+|..||.++||+..
T Consensus 145 ~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 145 WLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999999999999999999999888889999999999864
No 361
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-33 Score=287.04 Aligned_cols=217 Identities=24% Similarity=0.322 Sum_probs=176.6
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (513)
...+.|.+++|.|. ..+++|+++||.+++|+.+||+||||+||||++++|..++.+++ |.|.++|+++..
T Consensus 260 ~g~v~F~~V~F~y~----~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~s---G~I~id~qdir~vtq 332 (497)
T COG5265 260 LGAVAFINVSFAYD----PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNS---GSITIDGQDIRDVTQ 332 (497)
T ss_pred cceEEEEEEEeecc----ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcC---ceEEEcchhHHHhHH
Confidence 34689999999996 45679999999999999999999999999999999999999875 999999987532
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGE 252 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGq 252 (513)
.++.||.|||+..||.. |...|+.|+. +. ...+.+..+.+...+.++....+.|.+. .-.|||||
T Consensus 333 ~slR~aIg~VPQDtvLFND-ti~yni~ygr----~~---at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSgge 404 (497)
T COG5265 333 QSLRRAIGIVPQDTVLFND-TIAYNIKYGR----PD---ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGE 404 (497)
T ss_pred HHHHHHhCcCcccceehhh-hHHHHHhccC----cc---ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCch
Confidence 23569999999999954 8999997642 21 2233455555665555554444333222 23499999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
||||+|||+++.+|+||+|||.||+||..+.+++...|+++. .|+|.+++.|..+. + --+|+|++|++|+|++.|.-
T Consensus 405 kqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~~g~i~erg~h 481 (497)
T COG5265 405 KQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTH 481 (497)
T ss_pred HHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcH
Confidence 999999999999999999999999999999999999999987 56777777888753 3 35899999999999999998
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
.+++.
T Consensus 482 ~~ll~ 486 (497)
T COG5265 482 EELLA 486 (497)
T ss_pred HHHHH
Confidence 88765
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=2.5e-32 Score=294.67 Aligned_cols=201 Identities=25% Similarity=0.328 Sum_probs=166.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.+.++|+++.| +.+.+++++|+.+.+|+.+||||+||||||||||+|+|...|+. |+|...+. -.+
T Consensus 3 ~i~~~~ls~~~-----g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~---G~i~~~~~------~~v 68 (530)
T COG0488 3 MITLENLSLAY-----GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS---GEVTRPKG------LRV 68 (530)
T ss_pred eEEEeeeEEee-----CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCC---CeEeecCC------ceE
Confidence 68999999999 35689999999999999999999999999999999999998875 99987642 358
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHh--c-----------CCCc----------------hhhHHHHHHHHHHHcCChhHH
Q 010314 185 GFVERETTLIGSLTVREYLYYSALL--Q-----------LPGF----------------FCQRKNVVEDAIHAMSLSDYA 235 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~--~-----------~~~~----------------~~~~~~~v~~~l~~~~L~~~~ 235 (513)
+|+.|++.+.+..||.+.+.-+..- . ++.. ....+.++..++..+|+.+.
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~- 147 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE- 147 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-
Confidence 9999999999999999988554210 0 0000 00123456777888888766
Q ss_pred hhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcC
Q 010314 236 NKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315 (513)
Q Consensus 236 ~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~ 315 (513)
++.++ +||||||.||+||++|+.+|+||||||||++||..+..-+-+.|++. .| |+|+++|+ ...+-+.|
T Consensus 148 ~~~~~------~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~V~ 217 (530)
T COG0488 148 DRPVS------SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDNVA 217 (530)
T ss_pred cCchh------hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHHHh
Confidence 66555 99999999999999999999999999999999999999999999864 46 88887776 57889999
Q ss_pred CEEEEEeCCeEEEEe
Q 010314 316 DRICLLSNGNTLFFG 330 (513)
Q Consensus 316 D~v~vL~~G~iv~~G 330 (513)
++|+-++.|++..++
T Consensus 218 t~I~~ld~g~l~~y~ 232 (530)
T COG0488 218 THILELDRGKLTPYK 232 (530)
T ss_pred hheEEecCCceeEec
Confidence 999999999886553
No 363
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5.6e-32 Score=325.10 Aligned_cols=194 Identities=24% Similarity=0.329 Sum_probs=153.5
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHH
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
.+.+|+|+|+.+++|++++|+|||||||||||++|+|+++|+. |+|.+. +.++|++|++.++ ..||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~---G~i~~~--------~~i~yv~Q~~~l~-~~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISE---GRVWAE--------RSIAYVPQQAWIM-NATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEEC--------CeEEEEeCCCccC-CCcHHH
Confidence 3569999999999999999999999999999999999999875 999874 3599999999887 469999
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs 276 (513)
|+.+... ...++++++++..+|.+..+....| ...+..|||||||||+|||||+.+|+||||||||+
T Consensus 740 nI~~~~~--------~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~s 811 (1560)
T PTZ00243 740 NILFFDE--------EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLS 811 (1560)
T ss_pred HHHcCCh--------hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 9987421 1112234444444444333222111 12456899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
+||+.++..+++.+......|+|+|+++|++. . ...||+|++|++|++++.|+.+++..
T Consensus 812 aLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~-~-~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 812 ALDAHVGERVVEECFLGALAGKTRVLATHQVH-V-VPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred cCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH-H-HHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999988754322235899999999873 4 46799999999999999999888653
No 364
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=7.9e-32 Score=263.63 Aligned_cols=189 Identities=21% Similarity=0.218 Sum_probs=133.4
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHH-HHHHcCCCCCCCceeEEEEC-----------C--EeCC---CCCceE
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLL-RAIAGRLPHSARMYGEVFVN-----------G--AKSE---MPYGSY 184 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl-~~L~G~~~~~~~~~G~I~i~-----------G--~~~~---~~~~~~ 184 (513)
...+|++|||++++||+++|+|+||||||||+ ..|... |++.+. | ...+ ......
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAE--------GQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHH--------HHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 34699999999999999999999999999995 444321 221110 0 0000 001122
Q ss_pred EEEcCCc--ccCCCCCHHH---HHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 185 GFVERET--TLIGSLTVRE---YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 185 ~yv~Q~~--~l~~~lTV~E---~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.+..|++ .+.|..+|.. ...+...+. .. .....+ .+.++.++|.+ ..++ ++.+|||||||||+|
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~--~~~~~~-~~~l~~~~l~~~~~~~------~~~~LSgG~~qrv~l 148 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-AR--VGIRER-LGFLVDVGLGYLTLSR------SAPTLSGGEAQRIRL 148 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh-hh--hhHHHH-HHHHHHCCCCcccccC------ccCcCCHHHHHHHHH
Confidence 3333332 3345556543 222211111 11 112223 56899999975 3555 456999999999999
Q ss_pred HHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEe
Q 010314 259 ARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFG 330 (513)
Q Consensus 259 AraL~~~P--~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G 330 (513)
||+|+.+| ++|||||||+|||+.++..+++.|++++++|.|+|+++|++. .+ .+||++++| ++|+++++|
T Consensus 149 aral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 149 ATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 99999998 599999999999999999999999999878999999999874 55 689999999 999999876
No 365
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.6e-32 Score=305.90 Aligned_cols=213 Identities=16% Similarity=0.156 Sum_probs=150.4
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC---CCCCCceeEEEECCEeCCC
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL---PHSARMYGEVFVNGAKSEM 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~---~~~~~~~G~I~i~G~~~~~ 179 (513)
...|.++|++++|. ++.+|+|+||+|.+|+++||+|+|||||||||++|+|+. .|. .|+|.+.++....
T Consensus 175 ~~~I~i~nls~~y~-----~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~---~g~I~~~~Q~~~g 246 (718)
T PLN03073 175 IKDIHMENFSISVG-----GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPK---NCQILHVEQEVVG 246 (718)
T ss_pred ceeEEEceEEEEeC-----CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCC---CCEEEEEeccCCC
Confidence 34699999999994 346999999999999999999999999999999999964 222 3777654322100
Q ss_pred C-------------------CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc-----------------hhhHHHHHH
Q 010314 180 P-------------------YGSYGFVERETTLIGSLTVREYLYYSALLQLPGF-----------------FCQRKNVVE 223 (513)
Q Consensus 180 ~-------------------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~-----------------~~~~~~~v~ 223 (513)
. ...++|++|++.+... ++.++.........+.. ......++.
T Consensus 247 ~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~ 325 (718)
T PLN03073 247 DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325 (718)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 0 0113344443221110 11111000000000000 012334567
Q ss_pred HHHHHcCCh-hHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEE
Q 010314 224 DAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF 302 (513)
Q Consensus 224 ~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~ 302 (513)
+++..+|+. +..++.+ ..|||||||||+||++|+.+|+||||||||++||+.+...+.+.|+++ +.|||+
T Consensus 326 ~~L~~lgl~~~~~~~~~------~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tvii 396 (718)
T PLN03073 326 SILAGLSFTPEMQVKAT------KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIV 396 (718)
T ss_pred HHHHHCCCChHHHhCch------hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEE
Confidence 778888885 4455544 499999999999999999999999999999999999999999999886 679999
Q ss_pred EEeCChHHHHhcCCEEEEEeCCeEE-EEeChHH
Q 010314 303 TINQSSTEVFGLFDRICLLSNGNTL-FFGETLA 334 (513)
Q Consensus 303 t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~ 334 (513)
++|+. ..+..+||++++|++|+++ +.|+.+.
T Consensus 397 vsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 397 VSHAR-EFLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred EECCH-HHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 88875 6788999999999999996 5666543
No 366
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=9.1e-31 Score=302.49 Aligned_cols=217 Identities=22% Similarity=0.307 Sum_probs=184.7
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (513)
...++|+|++++|.. +...+|+|||++|+|||-+||+|..|||||||+++|..+..|.+ |+|.|||.++..
T Consensus 1136 ~G~I~f~~~~~RYrp---~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~---G~I~IDgvdI~~igL 1209 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRP---NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE---GEILIDGVDISKIGL 1209 (1381)
T ss_pred CCeEEEEEeEEEeCC---CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccC---CeEEEcCeecccccH
Confidence 357999999999953 34579999999999999999999999999999999999998864 999999988643
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGE 252 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGq 252 (513)
.+++++.+||+|.+|.. |||.||.- - ..-.++.+-++|+..+|.++..++++|.+ ....+|-||
T Consensus 1210 ~dLRsrlsIIPQdPvLFsG-TvR~NLDP-------f-~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQ 1280 (1381)
T KOG0054|consen 1210 HDLRSRLSIIPQDPVLFSG-TVRFNLDP-------F-DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQ 1280 (1381)
T ss_pred HHHHhcCeeeCCCCceecC-ccccccCc-------c-cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHH
Confidence 24679999999999965 99999931 1 12245678999999999887766655432 225699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
||.|++||||+++.+||+|||+|+++|+.+-..|-+.|++-= .++|||.+.|... .+. -||||+||++|+++++|+|
T Consensus 1281 RQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~-TVm-d~DrVlVld~G~v~EfdsP 1357 (1381)
T KOG0054|consen 1281 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLN-TVM-DSDRVLVLDAGRVVEFDSP 1357 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccc-hhh-hcCeEEEeeCCeEeecCCh
Confidence 999999999999999999999999999999999999998843 4799999888875 344 3899999999999999999
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
.+++.
T Consensus 1358 ~~Ll~ 1362 (1381)
T KOG0054|consen 1358 AELLS 1362 (1381)
T ss_pred HHHHh
Confidence 99875
No 367
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.3e-31 Score=240.41 Aligned_cols=210 Identities=20% Similarity=0.256 Sum_probs=169.7
Q ss_pred ceEEEEeEEEEEeccccc--cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe--CC-
Q 010314 104 ASVVWKDLTVTIKGKRRY--SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK--SE- 178 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~--~~- 178 (513)
..|.++|++++|.-.... .-++|+++||.++.||+++|-||||+|||||||+|-|.+.|++ |+|++.-.. ++
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~---G~I~v~H~g~~vdl 79 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE---GQILVRHEGEWVDL 79 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCC---ceEEEEeCcchhhh
Confidence 357889999888532222 2369999999999999999999999999999999999999985 999985421 11
Q ss_pred ----------CCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCC
Q 010314 179 ----------MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (513)
Q Consensus 179 ----------~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~L 248 (513)
..++.+|||.|.-...|..+..|.+..++.-+. ...+..+.++..++.++++.+.+..+ .|..+
T Consensus 80 ~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~g-v~~~~a~~~a~~Ll~rLnlperLW~L-----aPaTF 153 (235)
T COG4778 80 VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARG-VPREVARAKAADLLTRLNLPERLWSL-----APATF 153 (235)
T ss_pred hccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCCCHHHhcC-----CCccc
Confidence 123568999999888899888888877654332 12234567788999999998766554 46699
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
||||+|||.|||.++.+-+||+|||||+.||..++..++++|++-+..|..+|=+-|+ .+.-...|||++-|..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999999999988889888886665 3344568999998853
No 368
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=3.2e-30 Score=298.00 Aligned_cols=211 Identities=23% Similarity=0.329 Sum_probs=181.1
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
...++++|.+++.... .....|+|||+.+++|+++||+|+-|||||+||.+|.|.++.. +|+|.++|.
T Consensus 516 ~~~i~i~~~sfsW~~~--~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~gs------- 583 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSE--SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNGS------- 583 (1381)
T ss_pred CceEEEeeeeEecCCC--CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcCe-------
Confidence 3568999999998642 2344999999999999999999999999999999999999875 599999985
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERRRVR 257 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqrqRv~ 257 (513)
++||+|.+.++. .||+|||.|+.. -.+++.+++++...|.+..+-++.|+. ..-.||||||||++
T Consensus 584 -iaYv~Q~pWI~n-gTvreNILFG~~--------~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIs 653 (1381)
T KOG0054|consen 584 -VAYVPQQPWIQN-GTVRENILFGSP--------YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRIS 653 (1381)
T ss_pred -EEEeccccHhhC-CcHHHhhhcCcc--------ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHH
Confidence 899999999985 599999988632 134667888999999877776665443 33569999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
+|||+-.+.+|++||.|.|++|++....+++..-...-+++|+|++||+. +....||.|++|++|+++..|+.+|+..
T Consensus 654 LARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 654 LARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred HHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 99999999999999999999999999999887765445689999999975 5778899999999999999999999873
No 369
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=6.2e-30 Score=254.38 Aligned_cols=194 Identities=19% Similarity=0.227 Sum_probs=149.2
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHH--------cCC--CCC--CCcee------EEEECCEeCCCCC----
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA--------GRL--PHS--ARMYG------EVFVNGAKSEMPY---- 181 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~--------G~~--~~~--~~~~G------~I~i~G~~~~~~~---- 181 (513)
.-|+||+..|+.|.+++|.|+||||||||++.+. +.. .|. ..+.| -|.++..++....
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998662 110 011 01112 3556654431100
Q ss_pred ---------------------------ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-
Q 010314 182 ---------------------------GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD- 233 (513)
Q Consensus 182 ---------------------------~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~- 233 (513)
..+.|..++...+..+||.|++.|...+. ...++.++++.+||.+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~-------~~~~~~~~L~~vgL~~l 161 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP-------KIARKLQTLCDVGLGYI 161 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh-------hHHHHHHHHHHcCCchh
Confidence 01345556666667899999998764331 1245678999999987
Q ss_pred HHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHH
Q 010314 234 YANKLIGGHCYMKGLPCGERRRVRIARELVMR---PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310 (513)
Q Consensus 234 ~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~---P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~ 310 (513)
..++.+ ..|||||+||++||++|+.+ |+++||||||+|||+..+..+++.|+++.+.|.|||+++|++. .
T Consensus 162 ~l~~~~------~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~-~ 234 (261)
T cd03271 162 KLGQPA------TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD-V 234 (261)
T ss_pred hhcCcc------ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-H
Confidence 355544 49999999999999999996 7999999999999999999999999999888999999998873 4
Q ss_pred HHhcCCEEEEE------eCCeEEEEeCh
Q 010314 311 VFGLFDRICLL------SNGNTLFFGET 332 (513)
Q Consensus 311 i~~~~D~v~vL------~~G~iv~~G~~ 332 (513)
+ ..||++++| ++|++++.|++
T Consensus 235 i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 235 I-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred H-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 4 579999999 89999999874
No 370
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=7.6e-31 Score=235.70 Aligned_cols=132 Identities=35% Similarity=0.597 Sum_probs=116.5
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCceEEEEcCCcccCCCCCHH
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSLTVR 200 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~lTV~ 200 (513)
|+|||+.+++|++++|+|+||||||||+++|+|..++. +|+|.++|.+... ..+.++|++|++.+++.+||.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD---SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES---EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc---ccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999886 5999999988654 235799999999999999999
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010314 201 EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (513)
Q Consensus 201 E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs 276 (513)
|| .....++++++.+++.+..++.++ ..+..|||||||||+||+||+.+|++|||||||+
T Consensus 78 ~~--------------~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 EN--------------ESDERIEEVLKKLGLEDLLDRKIG--QRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HH--------------HHHHHHHHHHHHTTHGGGTGSBGT--SCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cc--------------cccccccccccccccccccccccc--cccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99 123458889999999888777763 2347999999999999999999999999999996
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=5.8e-29 Score=268.58 Aligned_cols=203 Identities=25% Similarity=0.317 Sum_probs=167.6
Q ss_pred CCceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 010314 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (513)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (513)
+...++++|+++.|.+ .+.+++++||.+.+|+.+||+||||+|||||||+|+|...|. +|+|.+.-.
T Consensus 318 g~~vl~~~~~~~~y~~----~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~~------ 384 (530)
T COG0488 318 GKLVLEFENVSKGYDG----GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGET------ 384 (530)
T ss_pred CCeeEEEeccccccCC----CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCCc------
Confidence 4567999999999953 257999999999999999999999999999999999998886 499987532
Q ss_pred ceEEEEcCCc-ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 182 GSYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 182 ~~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
-.+||..|+. .+.+..|+.|++.-. .+. .....+...|..|++.. ...+.++ .||||||.||.+|
T Consensus 385 v~igyf~Q~~~~l~~~~t~~d~l~~~----~~~---~~e~~~r~~L~~f~F~~~~~~~~v~------~LSGGEk~Rl~La 451 (530)
T COG0488 385 VKIGYFDQHRDELDPDKTVLEELSEG----FPD---GDEQEVRAYLGRFGFTGEDQEKPVG------VLSGGEKARLLLA 451 (530)
T ss_pred eEEEEEEehhhhcCccCcHHHHHHhh----Ccc---ccHHHHHHHHHHcCCChHHHhCchh------hcCHhHHHHHHHH
Confidence 3589999985 555788999988532 111 11566889999999963 4556554 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE-eChHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF-GETLAC 335 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~-G~~~~~ 335 (513)
+.++.+|.||||||||++||..+...+.+.|... ..|||+++|+. ..+..+|++++++.+ ++..+ |..++.
T Consensus 452 ~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 452 KLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred HHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 9999999999999999999999999999998876 35888878875 689999999999998 65554 665543
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=1.3e-29 Score=242.80 Aligned_cols=165 Identities=19% Similarity=0.238 Sum_probs=128.8
Q ss_pred eeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC------CceeEEEECCEeCCC--CCceEEEEcCCcccCCCCC
Q 010314 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA------RMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLT 198 (513)
Q Consensus 127 ~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~------~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lT 198 (513)
+++++.+.+| +++|+||||||||||+++|+|++++.. ...|++.+.|.+... ..+.++|++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 999999999999999999999986541 123567777765322 235799999998766
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCC
Q 010314 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV----MRPHVLFIDEP 274 (513)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~----~~P~iLllDEP 274 (513)
|. . ...++++++++. .+..++. +..||||||||++||++|+ .+|+++|||||
T Consensus 89 ------~~----~-----~~~~~~~~~l~~---~~~~~~~------~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 ------YS----I-----ISQGDVSEIIEA---PGKKVQR------LSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred ------ee----E-----EehhhHHHHHhC---CCccccc------hhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 11 0 012346666666 3344443 4599999999999999997 46699999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
|+|||+..+..+++.|+++++ +.|||+++|++. . ...||+++.|..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~-~~~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSK-ETQFIVITHRKG-T-MEAADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-H-HhhcceEEEEEe
Confidence 999999999999999999865 688999888863 4 468999999964
No 373
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=8.9e-29 Score=261.63 Aligned_cols=211 Identities=22% Similarity=0.330 Sum_probs=174.9
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-- 180 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-- 180 (513)
.+.++++|++.. ..++||||++++||+++|.|-=|||+|-|+++|.|..++. +|+|.++|++....
T Consensus 261 ~~~l~v~~l~~~---------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~---~G~i~l~G~~v~~~sp 328 (500)
T COG1129 261 EPVLEVRNLSGG---------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS---SGEILLDGKPVRIRSP 328 (500)
T ss_pred CcEEEEecCCCC---------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC---CceEEECCEEccCCCH
Confidence 456788888742 2588999999999999999999999999999999987776 49999999975432
Q ss_pred ----CceEEEEcCC---cccCCCCCHHHHHHHHHHhcCC----CchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCC
Q 010314 181 ----YGSYGFVERE---TTLIGSLTVREYLYYSALLQLP----GFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGL 248 (513)
Q Consensus 181 ----~~~~~yv~Q~---~~l~~~lTV~E~l~~~~~~~~~----~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~L 248 (513)
...++||+.| ..++..++|.+|+.++...+.. -.....++.+++..+.+++. .-.+..+ ..|
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v------~~L 402 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI------GTL 402 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh------hcC
Confidence 2469999976 5789999999999887332211 11123455678888999885 2334444 499
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
|||.+|+|.|||.|..+|+||||||||.|.|.-+..+|.++|++|+++|++||++++.. +|+..+||||+||++|+++.
T Consensus 403 SGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 403 SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVG 481 (500)
T ss_pred CchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999987775 68999999999999999987
Q ss_pred EeCh
Q 010314 329 FGET 332 (513)
Q Consensus 329 ~G~~ 332 (513)
.-+.
T Consensus 482 e~~~ 485 (500)
T COG1129 482 ELDR 485 (500)
T ss_pred Eecc
Confidence 5433
No 374
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=1.3e-28 Score=242.78 Aligned_cols=184 Identities=17% Similarity=0.186 Sum_probs=127.4
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC----------------CCCCC---Ccee--EEEECCEeCC--
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR----------------LPHSA---RMYG--EVFVNGAKSE-- 178 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~----------------~~~~~---~~~G--~I~i~G~~~~-- 178 (513)
...++++++ |++++|+||||||||||+++|+++ +.++. ...+ +|.+++.+..
T Consensus 14 ~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 14 DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccC
Confidence 345777776 789999999999999999999844 23321 0112 5555553210
Q ss_pred ---C---CCceEEEEcCCcccCC-CCCHHHHHHHHHHhcCCCchh---hHHHHHHHHHHHcCChhHHhhhhcCCCCCCCC
Q 010314 179 ---M---PYGSYGFVERETTLIG-SLTVREYLYYSALLQLPGFFC---QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL 248 (513)
Q Consensus 179 ---~---~~~~~~yv~Q~~~l~~-~lTV~E~l~~~~~~~~~~~~~---~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~L 248 (513)
. ..+.++|++|+..+++ ..|..|...+...+....... .... ++.+.+++.+..+. .+..|
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg---~i~~l~~l~~~~~~------~~~~l 159 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQG---KINSLTNMKQDEQQ------EMQQL 159 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcC---chHHhhhccccccc------ccccc
Confidence 0 1245889998888877 467777666554443322100 0112 23333445443444 34599
Q ss_pred CHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 249 PCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 249 SGGqrqRv~IAraL~~----~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
|||||||++|||+|+. +|+++||||||+|||+.++..+++.|+++++ +.++|++ ||. .++..+||++++|.
T Consensus 160 S~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~-~h~-~~~~~~~d~i~~l~ 234 (243)
T cd03272 160 SGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITT-TFR-PELLEVADKFYGVK 234 (243)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEE-ecC-HHHHhhCCEEEEEE
Confidence 9999999999999974 5899999999999999999999999999865 6677765 454 36789999999985
No 375
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=5.5e-29 Score=226.99 Aligned_cols=206 Identities=25% Similarity=0.361 Sum_probs=171.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.+.++|+...- -|-.+|+.+..||++-++|||||||||||-.++|+++.. |+|.++|.+.+.+
T Consensus 3 l~qln~v~~~t---------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~s----Gsi~~~G~~l~~~~~~e 69 (248)
T COG4138 3 LMQLNDVAEST---------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS----GSIQFAGQPLEAWSATE 69 (248)
T ss_pred eeeeccccccc---------cccccccccccceEEEEECCCCccHHHHHHHHhCCCCCC----ceEEECCcchhHHhHhH
Confidence 45677776542 477889999999999999999999999999999998753 9999999885432
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.+.-+|+.|+..-...|.|...|.+ ..|. .+....+.++...++|.+...+.+. +|||||=|||-+|
T Consensus 70 LArhRAYLsQqq~p~f~mpV~~YL~L----~qP~--~~~a~~i~~i~~~L~l~DKL~Rs~~------qLSGGEWQRVRLA 137 (248)
T COG4138 70 LARHRAYLSQQQTPPFAMPVWHYLTL----HQPD--KTRTELLNDVAGALALDDKLGRSTN------QLSGGEWQRVRLA 137 (248)
T ss_pred HHHHHHHHhhccCCcchhhhhhhhhh----cCch--HHHHHHHHHHHhhhcccchhhhhhh------hcCcccceeeEEe
Confidence 2445788877655556788888743 3343 3455678888999999888777654 9999999999999
Q ss_pred HHHhh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 260 RELVM-----RP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 260 raL~~-----~P--~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
...+. || ++|++|||.++||...+..+-++|.+++..|.+||++.|+. ....+.+|++.+|+.|++...|..
T Consensus 138 av~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDL-NhTLrhA~~~wLL~rG~l~~~G~~ 216 (248)
T COG4138 138 AVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDL-NHTLRHAHRAWLLKRGKLLASGRR 216 (248)
T ss_pred EEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccch-hhHHHHHHHHHHHhcCeEEeecch
Confidence 87764 44 69999999999999999999999999999999999988876 467889999999999999999999
Q ss_pred HHHH
Q 010314 333 LACL 336 (513)
Q Consensus 333 ~~~~ 336 (513)
++++
T Consensus 217 ~eVl 220 (248)
T COG4138 217 EEVL 220 (248)
T ss_pred hhhc
Confidence 9875
No 376
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.95 E-value=6.7e-27 Score=251.84 Aligned_cols=198 Identities=23% Similarity=0.334 Sum_probs=164.3
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
...+.++||++.-++ +...|++.++.+++|+.+.|.||||||||||+|+|+|+.|..+ |+|.+- ...
T Consensus 390 ~~~i~~~nl~l~~p~----~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~---G~I~~P------~~~ 456 (604)
T COG4178 390 DHGITLENLSLRTPD----GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS---GRISMP------ADS 456 (604)
T ss_pred cceeEEeeeeEECCC----CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCC---CceecC------CCC
Confidence 367999999998764 3479999999999999999999999999999999999998764 877653 124
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.+-|+||.+.+... |.+|-|.|+.... .-.++.+.++|..+||.++.+++-.-.++-+.||+||||||++||.|
T Consensus 457 ~~lflpQ~PY~p~G-tLre~l~YP~~~~-----~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARil 530 (604)
T COG4178 457 ALLFLPQRPYLPQG-TLREALCYPNAAP-----DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL 530 (604)
T ss_pred ceEEecCCCCCCCc-cHHHHHhCCCCCC-----CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHH
Confidence 57899999987654 9999998753211 13456789999999999998887555567788999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
+++|++++|||.|++||+.++..++++|++-. .+.|||-+.|.+ .+..+.++.+-+.
T Consensus 531 L~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 531 LHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred HcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccch--hhHHHHhhheeec
Confidence 99999999999999999999999999998732 378888888876 4666777766553
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=7.2e-29 Score=240.41 Aligned_cols=186 Identities=15% Similarity=0.173 Sum_probs=134.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-CCCce
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-MPYGS 183 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-~~~~~ 183 (513)
.++++|+. .| ..+.+++++++ ++++|+||||||||||+++|.-.. |.+.. ...+.
T Consensus 5 ~l~l~nfk-~~-----~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~-------------G~~~~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SY-----AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVF-------------GFRASKMRQKK 60 (212)
T ss_pred EEEEECcc-cC-----CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHh-------------ccCHHHhhhhh
Confidence 35666664 44 34568898887 899999999999999999998321 11111 11235
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcC------CC-chhhHHH--HHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQL------PG-FFCQRKN--VVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~------~~-~~~~~~~--~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
+++++|+..+++.+|+.+++.+...... .. ....... ...++++.++|.+..++.+ ..||+||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~------~~lS~G~~~ 134 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI------SNLSGGEKT 134 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch------hhcCHHHHH
Confidence 7888888888888888887654322110 00 0001010 1255667778877666654 489999999
Q ss_pred HHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 255 RVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 255 Rv~IAraL~~----~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
|++||++++. +|+++||||||+|||+.++..+.+.|+++++ +.|+|+++|++ ++.++||++++|..
T Consensus 135 r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 135 LSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 9999999974 4799999999999999999999999999864 56777777874 68899999999964
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=1.1e-27 Score=237.79 Aligned_cols=175 Identities=18% Similarity=0.160 Sum_probs=135.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE-eC-------CCCCceEEEEcCCc---------ccCCCCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA-KS-------EMPYGSYGFVERET---------TLIGSLT 198 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~-~~-------~~~~~~~~yv~Q~~---------~l~~~lT 198 (513)
..+++|+||||||||||+++|++++.+.. .|++.+.|. +. ......+++++|++ .+.|.+|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~--~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITN--LSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccc--cccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 56999999999999999999999987642 267777665 21 11224688999984 3466789
Q ss_pred HHHHHHHHHHhc--CCCchhhHHHHHHHHHHHcCCh--------------------hHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 199 VREYLYYSALLQ--LPGFFCQRKNVVEDAIHAMSLS--------------------DYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 199 V~E~l~~~~~~~--~~~~~~~~~~~v~~~l~~~~L~--------------------~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
|.+++.+..... ... .....+.+.++|+.+++. +..+ .++.+||||||||+
T Consensus 103 V~r~I~~~~~~~~~in~-~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~------~~~~~lS~G~~qr~ 175 (251)
T cd03273 103 VTRQIVLGGTNKYLING-HRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWK------ESLTELSGGQRSLV 175 (251)
T ss_pred EEEEEEcCCceEEEECC-EEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhc------ccccccCHHHHHHH
Confidence 998885532211 111 122346788999999985 2222 35669999999999
Q ss_pred HHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 257 RIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 257 ~IAraL~----~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
+||++|+ .+|++++|||||++||+..+..+++.|+++. +|.++|+++|.+ ++.+.||+++-+.
T Consensus 176 ~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 176 ALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 9999998 5789999999999999999999999999985 488999988883 6788899998875
No 379
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.94 E-value=1.6e-26 Score=224.15 Aligned_cols=190 Identities=16% Similarity=0.121 Sum_probs=130.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEe-CCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCE----eCC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYAL-PGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGA----KSE 178 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~-~Ge~~aliGpsGsGKSTLl~~L~G~~~-~~~~~~G~I~i~G~----~~~ 178 (513)
.++++|+. .|.+ . ++++|... +|++++|+||||||||||+++|++.+- +. .+....+.. ...
T Consensus 5 ~i~l~nf~-~y~~-----~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~---~~~~~~~~~~~~~~~~ 72 (213)
T cd03279 5 KLELKNFG-PFRE-----E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKT---PRYGRQENLRSVFAPG 72 (213)
T ss_pred EEEEECCc-CcCC-----c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCc---cccccchhHHHHhcCC
Confidence 46777776 5421 1 45566543 589999999999999999999996431 11 132322210 011
Q ss_pred CCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHH-HHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 179 MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVED-AIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 179 ~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~-~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
.....+++++|+..... ++.... ... .+...+. .++..++.+..++. +..|||||+||++
T Consensus 73 ~~~~~v~~~f~~~~~~~--~~~r~~------gl~-----~~~~~~~~~l~~g~l~~~l~~~------~~~lS~G~~~r~~ 133 (213)
T cd03279 73 EDTAEVSFTFQLGGKKY--RVERSR------GLD-----YDQFTRIVLLPQGEFDRFLARP------VSTLSGGETFLAS 133 (213)
T ss_pred CccEEEEEEEEECCeEE--EEEEec------CCC-----HHHHHHhhhhhhcchHHHhcCC------ccccCHHHHHHHH
Confidence 12346888888753211 111111 111 1111111 23444455665554 4599999999999
Q ss_pred HHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 258 IARELVM----------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 258 IAraL~~----------~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
||++|+. +|++|||||||++||+.++..+.+.|+++++++.|||+++|++ ..+..+||++++|++|.+
T Consensus 134 la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~-~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 134 LSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVE-ELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECch-HHHHhhCcEEEEEecCCC
Confidence 9999985 5789999999999999999999999999987789999999987 578899999999998853
No 380
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.94 E-value=1.5e-25 Score=233.04 Aligned_cols=220 Identities=21% Similarity=0.257 Sum_probs=181.3
Q ss_pred CCceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC-
Q 010314 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EM- 179 (513)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~- 179 (513)
+...|+++||++.-. .+...+++|||.+++||+++|.|-.|.|-+.|+.+|+|+.++.. |+|.++|++. ..
T Consensus 254 g~~vL~V~~L~v~~~----~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~---G~I~l~G~~v~~~~ 326 (501)
T COG3845 254 GEVVLEVEDLSVKDR----RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPAS---GRILLNGKDVLGRL 326 (501)
T ss_pred CCeEEEEeeeEeecC----CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCC---ceEEECCEeccccC
Confidence 356899999998642 22468999999999999999999999999999999999987764 9999999985 21
Q ss_pred -----CCceEEEEcCCc---ccCCCCCHHHHHHHHHHhcC-----C-CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCC
Q 010314 180 -----PYGSYGFVERET---TLIGSLTVREYLYYSALLQL-----P-GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245 (513)
Q Consensus 180 -----~~~~~~yv~Q~~---~l~~~lTV~E~l~~~~~~~~-----~-~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~ 245 (513)
....++|||.|. .+.+.+|+.||+.+...... . -......+...++++.+++...- .....
T Consensus 327 ~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~-----~~~~a 401 (501)
T COG3845 327 SPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPS-----PDAPA 401 (501)
T ss_pred CHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCC-----CCcch
Confidence 124689999875 67889999999977643211 1 01134566788899999886221 12235
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
+.||||++||+-+||+|..+|++|++.+||.|||..+...|.+.|.++++.|+.|++++.+ .++++.+||||.+|++|+
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~d-LDEil~lsDrIaVi~~Gr 480 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISED-LDEILELSDRIAVIYEGR 480 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehh-HHHHHHhhheeeeeeCCc
Confidence 6999999999999999999999999999999999999999999999999999999996655 579999999999999999
Q ss_pred EEEEeChHH
Q 010314 326 TLFFGETLA 334 (513)
Q Consensus 326 iv~~G~~~~ 334 (513)
++...++++
T Consensus 481 i~~~~~~~~ 489 (501)
T COG3845 481 IVGIVPPEE 489 (501)
T ss_pred eeccccccc
Confidence 998777654
No 381
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=2.3e-25 Score=264.01 Aligned_cols=214 Identities=19% Similarity=0.186 Sum_probs=154.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHH---------HHHcCCCCCCCc---------
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLR---------AIAGRLPHSARM--------- 166 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~---------~L~G~~~~~~~~--------- 166 (513)
.++++|++. ..|+++|+.|++||+++|.|+||||||||++ .|.|..++...+
T Consensus 600 ~L~l~~~~~----------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi 669 (1809)
T PRK00635 600 TLTLSKATK----------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLV 669 (1809)
T ss_pred eEEEecccc----------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeE
Confidence 567777652 2699999999999999999999999999999 555643221000
Q ss_pred ------------eeEEEECCE--eCC----------------------------CCCceEEE----EcCC----------
Q 010314 167 ------------YGEVFVNGA--KSE----------------------------MPYGSYGF----VERE---------- 190 (513)
Q Consensus 167 ------------~G~I~i~G~--~~~----------------------------~~~~~~~y----v~Q~---------- 190 (513)
++.+++-|. ++. ...+..|+ .+..
T Consensus 670 ~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~Gk 749 (1809)
T PRK00635 670 HITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGK 749 (1809)
T ss_pred EecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCc
Confidence 112332220 000 00011222 1111
Q ss_pred -------cccCCCCCHHHHHHHHHHhc--CCCchhhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 191 -------TTLIGSLTVREYLYYSALLQ--LPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 191 -------~~l~~~lTV~E~l~~~~~~~--~~~~~~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
...+...||.|+|.+...-. ......+..+++ ++|+.+||.+. .++.+ ..|||||||||+||+
T Consensus 750 Ry~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~------~tLSGGE~QRV~LAr 822 (1809)
T PRK00635 750 RFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL------SSLSGGEIQRLKLAY 822 (1809)
T ss_pred ccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc------ccCCHHHHHHHHHHH
Confidence 12456789999997764311 111112334455 58899999876 66654 499999999999999
Q ss_pred HHh---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe------CCeEEEEeC
Q 010314 261 ELV---MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS------NGNTLFFGE 331 (513)
Q Consensus 261 aL~---~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~------~G~iv~~G~ 331 (513)
+|+ .+|++|||||||+|||+.++..++++|+++++.|.|||+++|++ +.+ ..||++++|. +|++++.|+
T Consensus 823 aL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~Gt 900 (1809)
T PRK00635 823 ELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLASCS 900 (1809)
T ss_pred HHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEeCC
Confidence 998 69999999999999999999999999999998899999988887 456 8999999996 789999999
Q ss_pred hHHHHH
Q 010314 332 TLACLQ 337 (513)
Q Consensus 332 ~~~~~~ 337 (513)
++++..
T Consensus 901 peel~~ 906 (1809)
T PRK00635 901 PEELIH 906 (1809)
T ss_pred HHHHHh
Confidence 988753
No 382
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=4.4e-26 Score=219.69 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=122.3
Q ss_pred eeeEEeCCcEEEEEcCCCCcHHHHHHHHH----cCCCCCCCceeEEEECCEeC--CCCCceEEEEcCCc-----ccCCCC
Q 010314 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIA----GRLPHSARMYGEVFVNGAKS--EMPYGSYGFVERET-----TLIGSL 197 (513)
Q Consensus 129 vs~~i~~Ge~~aliGpsGsGKSTLl~~L~----G~~~~~~~~~G~I~i~G~~~--~~~~~~~~yv~Q~~-----~l~~~l 197 (513)
.++.+.+| +++|+||||||||||+++|. |..+++. |.+..+.... ......+++++|++ .....+
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~---~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNS---KGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCccc---ccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 99999999999999999995 8877753 5554111111 12234688888887 444556
Q ss_pred CHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH------HHHHHHHhhCCCEEEE
Q 010314 198 TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR------VRIARELVMRPHVLFI 271 (513)
Q Consensus 198 TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR------v~IAraL~~~P~iLll 271 (513)
|+.|++.+. + ...+++.+ ++ .++.||+||+|| ++||++|+.+|+++++
T Consensus 92 ~~~~~~~~~-----~------~~~~~~~~---------~~------~~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 92 AILENVIFC-----H------QGESNWPL---------LD------MRGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred hHhhceeee-----c------hHHHHHHH---------hc------CccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 888888542 1 11122222 33 345999999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 272 DEPLYHLDSVSAL-LMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 272 DEPTsgLD~~~~~-~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
||||++||+..+. .+.+.|++++++ |.+||+++|++. ....||+++.|.+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 9999999999999 999999999876 889999999863 4567999999954
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=6.9e-25 Score=250.25 Aligned_cols=126 Identities=21% Similarity=0.253 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC---CEEEEe
Q 010314 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVMRP---HVLFID 272 (513)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P---~iLllD 272 (513)
+||.|++.|...+. . .....+.|+.+||.. ..++.+ ..||||||||+.||++|+.+| +|+|||
T Consensus 792 ltv~E~l~~f~~~~--~-----i~~~l~~L~~vgL~~l~l~~~~------~tLSgGEkQRl~LAraL~~~p~~~~llILD 858 (943)
T PRK00349 792 MTVEEALEFFEAIP--K-----IARKLQTLVDVGLGYIKLGQPA------TTLSGGEAQRVKLAKELSKRSTGKTLYILD 858 (943)
T ss_pred CcHHHHHHHHHhch--h-----hhHHHHHHHHCCCCcccccCCc------ccCCHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 78888887754321 1 123467899999976 355544 499999999999999999999 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHHH
Q 010314 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (513)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (513)
|||+|||+..+..+++.|+++.+.|.|||+++|++. .+ ..||+|+.| ++|++++.|+++++..
T Consensus 859 EPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 859 EPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 999999999999999999999888999999888873 44 579999999 7999999999988653
No 384
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.93 E-value=5.2e-26 Score=229.70 Aligned_cols=203 Identities=19% Similarity=0.230 Sum_probs=161.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++|+.|.|... .-=+..||++++.||++-|+|.||||||||+++|.|+.+|++ |+|++||+++...
T Consensus 322 ~lelrnvrfay~~~----~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pqs---G~I~ldg~pV~~e~led 394 (546)
T COG4615 322 TLELRNVRFAYQDN----AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQS---GEILLDGKPVSAEQLED 394 (546)
T ss_pred ceeeeeeeeccCcc----cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCC---CceeECCccCCCCCHHH
Confidence 68999999998632 245889999999999999999999999999999999999985 9999999986432
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
++-++-|+-|..+|+.+ +. +.. ....+.++..|+++.|.+...-.- |.-.+-.||.|||||+++-
T Consensus 395 YR~LfSavFsDyhLF~~l-----------l~-~e~-~as~q~i~~~LqrLel~~ktsl~d-~~fs~~kLStGQkKRlAll 460 (546)
T COG4615 395 YRKLFSAVFSDYHLFDQL-----------LG-PEG-KASPQLIEKWLQRLELAHKTSLND-GRFSNLKLSTGQKKRLALL 460 (546)
T ss_pred HHHHHHHHhhhHhhhHhh-----------hC-Ccc-CCChHHHHHHHHHHHHhhhhcccC-CcccccccccchHHHHHHH
Confidence 12234455555555432 11 111 123456888888888865432221 2334568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l-~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
.||+-+-+|+++||=-+.-||.-++.+.+.+--+ .+.|+||+.++|++ .-|..+||++.|.+|++++..
T Consensus 461 ~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 461 LALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 9999999999999999999999999999887654 56799999999986 468899999999999998764
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=2.7e-25 Score=208.13 Aligned_cols=228 Identities=21% Similarity=0.208 Sum_probs=175.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCc-eeEEEECCEeC-C----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARM-YGEVFVNGAKS-E---- 178 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~-~G~I~i~G~~~-~---- 178 (513)
.+-++||+..+... .+..+++++||+++.+||+-+++|+||||||-..|+|+|..+..=.+ .-...+++.+. .
T Consensus 3 LLDIrnL~IE~~Ts-qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 3 LLDIRNLTIEFKTS-QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred cccccceEEEEecC-CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 46788899888643 24567999999999999999999999999999999999997654111 12334444331 1
Q ss_pred CC----CceEEEEcCCc--ccCCCCCHHHHHHHHH--HhcCCC---chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCC
Q 010314 179 MP----YGSYGFVERET--TLIGSLTVREYLYYSA--LLQLPG---FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (513)
Q Consensus 179 ~~----~~~~~yv~Q~~--~l~~~lTV~E~l~~~~--~~~~~~---~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~ 247 (513)
.. .+.+++++|++ .|-|.-+|...|.-.. +-.... ...-++.+.-++|..+|+.+..|-.- .||.+
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~---SYP~E 158 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR---SYPYE 158 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH---hCcch
Confidence 11 13478899987 4556666655442211 100000 01124567789999999988777653 48999
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|.-||-|+|.||.|++.+|++||.||||+.+|+.++.+|+++|.++.+ .|.||++++|+. ..+.+.||++-||.-|+-
T Consensus 159 lTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d~i~VlYCGQ~ 237 (330)
T COG4170 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWADKINVLYCGQT 237 (330)
T ss_pred hccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhhheEEEEeccc
Confidence 999999999999999999999999999999999999999999999985 488888877665 689999999999999999
Q ss_pred EEEeChHHHHH
Q 010314 327 LFFGETLACLQ 337 (513)
Q Consensus 327 v~~G~~~~~~~ 337 (513)
++.++.++++.
T Consensus 238 ~ESa~~e~l~~ 248 (330)
T COG4170 238 VESAPSEELVT 248 (330)
T ss_pred ccccchhHHhc
Confidence 99999988764
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=4e-24 Score=243.59 Aligned_cols=125 Identities=19% Similarity=0.229 Sum_probs=101.8
Q ss_pred CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh---CCCEEEE
Q 010314 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARELVM---RPHVLFI 271 (513)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~---~P~iLll 271 (513)
.+||.|.+.|...+. . .....++|+.+||.. ..++.+ ..|||||+|||.||++|+. +|+++||
T Consensus 789 ~~tv~e~~~f~~~~~--~-----i~~~l~~L~~~gL~~l~l~~~~------~tLSgGe~QRl~LA~aL~~~~~~p~llIL 855 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP--S-----ISRKLQTLCDVGLGYIKLGQPA------TTLSGGEAQRIKLAKELSKRSTGRTLYIL 855 (924)
T ss_pred CCcHHHHHHHHHhcc--c-----hhHHHHHHHHcCCCchhhcCcc------ccCCHHHHHHHHHHHHHhhcCCCCCEEEE
Confidence 357777776643321 1 123457889999975 355544 4999999999999999997 5999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHH
Q 010314 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLAC 335 (513)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~ 335 (513)
||||+|||+..+..+++.|+++.+.|.|||+++|++. .+ ..||++++| ++|++++.|+++++
T Consensus 856 DEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 856 DEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999999999999888999999888873 45 579999999 79999999998764
No 387
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.91 E-value=1.4e-23 Score=215.62 Aligned_cols=189 Identities=20% Similarity=0.260 Sum_probs=149.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..+.|.+++++|. .--|+--.+.+..||+++++||||-||||+.++|+|.++|+. |. .. .-.
T Consensus 341 ~lv~y~~~~k~~g------~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPde---g~----~~-----~~~ 402 (591)
T COG1245 341 TLVEYPDLKKTYG------DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDE---GS----EE-----DLK 402 (591)
T ss_pred eeeecchheeecC------ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCC---CC----Cc-----cce
Confidence 4567777777763 235666677888999999999999999999999999999985 65 11 134
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~ 263 (513)
++|=||--.--...||.+.|.-........ .-...++++-+.|+++.++.+. +|||||.|||+||.+|.
T Consensus 403 vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~-----s~~~~ei~~pl~l~~i~e~~v~------~LSGGELQRvaIaa~L~ 471 (591)
T COG1245 403 VSYKPQYISPDYDGTVEDLLRSAIRSAFGS-----SYFKTEIVKPLNLEDLLERPVD------ELSGGELQRVAIAAALS 471 (591)
T ss_pred EeecceeecCCCCCcHHHHHHHhhhhhccc-----chhHHhhcCccchHHHHhcccc------cCCchhHHHHHHHHHhc
Confidence 778888644445679999886543221111 1234578888999999999775 99999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
.+++|.+||||++.||...+..+-+.|+++.++ ++|.+++-|+. ..+--++||+++..
T Consensus 472 reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 472 READLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred cccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce-ehhhhhhceEEEEe
Confidence 999999999999999999999999999999864 77888766765 46777899998774
No 388
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=8.4e-24 Score=221.19 Aligned_cols=211 Identities=25% Similarity=0.291 Sum_probs=140.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-Cc
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YG 182 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~ 182 (513)
..+.+++++++|. +..+++|++|.+.+|+-+||+|+|||||||+|++|.|...|....-+ ++.-.+..... ..
T Consensus 74 ~dvk~~sls~s~~-----g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d-~y~ls~e~~ps~~~ 147 (614)
T KOG0927|consen 74 RDVKIESLSLSFH-----GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID-FYLLSREIEPSEKQ 147 (614)
T ss_pred ccceeeeeeeccC-----CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc-hhhhcccCCCchHH
Confidence 3589999999984 56799999999999999999999999999999999999887531111 11111111000 00
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHH-HHh-----------------cCCC-chhhHHHHHHHHHHHcCC-hhHHhhhhcCC
Q 010314 183 SYGFVERETTLIGSLTVREYLYYS-ALL-----------------QLPG-FFCQRKNVVEDAIHAMSL-SDYANKLIGGH 242 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~-~~~-----------------~~~~-~~~~~~~~v~~~l~~~~L-~~~~~~~vg~~ 242 (513)
.+-++.+ +.-..+.-+.+- -.+ ++.. .......++.++|..+|. .+..++.+.
T Consensus 148 av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~-- 220 (614)
T KOG0927|consen 148 AVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVK-- 220 (614)
T ss_pred HHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhh--
Confidence 0000000 000000000000 000 0000 001223445566666665 456677654
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 243 CYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 243 ~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
+||||+|.|+++||+|..+|++|+|||||+|||..+..-+-+.|.+.-. + ++|+++| +.+.+-.+|.+|+-|.
T Consensus 221 ----~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi~sh-~QDfln~vCT~Ii~l~ 293 (614)
T KOG0927|consen 221 ----DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVIVSH-SQDFLNGVCTNIIHLD 293 (614)
T ss_pred ----ccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEEEec-chhhhhhHhhhhheec
Confidence 9999999999999999999999999999999999999999888877532 2 5666555 4568889999999999
Q ss_pred CCeEEEE-eChHH
Q 010314 323 NGNTLFF-GETLA 334 (513)
Q Consensus 323 ~G~iv~~-G~~~~ 334 (513)
+++.+++ |+-+.
T Consensus 294 ~kkl~~y~Gnydq 306 (614)
T KOG0927|consen 294 NKKLIYYEGNYDQ 306 (614)
T ss_pred ccceeeecCCHHH
Confidence 9996555 55443
No 389
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=2.5e-24 Score=225.14 Aligned_cols=202 Identities=20% Similarity=0.265 Sum_probs=156.9
Q ss_pred CCceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 010314 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (513)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (513)
+...+.++|++|.|.++ ..++++++|-+..++.+|++||||||||||||++.|.+.|.. |.|.-.-.
T Consensus 386 p~pvi~~~nv~F~y~~~----~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~---G~vs~~~H------ 452 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDN----PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTI---GMVSRHSH------ 452 (614)
T ss_pred CCCeEEEeccccCCCCc----chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccc---cccccccc------
Confidence 45689999999999642 269999999999999999999999999999999999999974 87754322
Q ss_pred ceEEEEcCC--cccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 182 GSYGFVERE--TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 182 ~~~~yv~Q~--~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
..+++..|+ ..+.-..++-|++.-. .+. ....+.+..++.++||.. ..+..+ .+||+|||+||..
T Consensus 453 ~~~~~y~Qh~~e~ldl~~s~le~~~~~----~~~--~~~~e~~r~ilgrfgLtgd~q~~p~------~~LS~Gqr~rVlF 520 (614)
T KOG0927|consen 453 NKLPRYNQHLAEQLDLDKSSLEFMMPK----FPD--EKELEEMRSILGRFGLTGDAQVVPM------SQLSDGQRRRVLF 520 (614)
T ss_pred ccchhhhhhhHhhcCcchhHHHHHHHh----ccc--cchHHHHHHHHHHhCCCccccccch------hhcccccchhHHH
Confidence 223444443 3344456677766421 121 134567889999999984 444444 5999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE-EeCh
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF-FGET 332 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~-~G~~ 332 (513)
|+.++..|.||+|||||+|||..+...+-+.|.++- .+||+++|+. ..|.+++++|.+..+|.+.. .|+.
T Consensus 521 a~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~---Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 521 ARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP---GGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC---Cceeeeechh-hHHHHHHHHhHhhccCceeecCccH
Confidence 999999999999999999999999999888887752 3667767876 48899999999998887654 4543
No 390
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=1.2e-23 Score=201.76 Aligned_cols=168 Identities=20% Similarity=0.161 Sum_probs=117.9
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe----C--CCCCceEEEEcCCcccCCCCCH
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK----S--EMPYGSYGFVERETTLIGSLTV 199 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~----~--~~~~~~~~yv~Q~~~l~~~lTV 199 (513)
++++++.+.+| +.+|+||||||||||+.+|...+.... . ....|.. + ......+.+.+++..++++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~---~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~--- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKA---S-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN--- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCc---c-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC---
Confidence 45677777777 889999999999999999985432211 0 0011210 0 1112456777777665541
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCC
Q 010314 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL----VMRPHVLFIDEPL 275 (513)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL----~~~P~iLllDEPT 275 (513)
+.. ......++++++. .+..++ .++.||+|||||++||++| +.+|+++||||||
T Consensus 84 ------------~~~-~~~~~~~~~~l~~---~~~~~~------~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~ 141 (198)
T cd03276 84 ------------PLC-VLSQDMARSFLTS---NKAAVR------DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFD 141 (198)
T ss_pred ------------cCC-HHHHHHHHHHhcc---ccccCC------cccccChhHHHHHHHHHHHHHhcccCCCEEEecCcc
Confidence 010 1123456666665 444444 4559999999999999999 5899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc--C-CeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 276 YHLDSVSALLMMVTLKKLAST--G-CTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 276 sgLD~~~~~~i~~~L~~l~~~--g-~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
+|||+..+..+.+.|+++.++ + .|||+++|+. .++..+ |+|.+|..++
T Consensus 142 ~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~-~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 142 VFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI-SGLASS-DDVKVFRMKD 192 (198)
T ss_pred cccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-cccccc-cceeEEEecC
Confidence 999999999999999998643 3 5788877776 466664 9999998754
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=3.9e-24 Score=212.00 Aligned_cols=178 Identities=17% Similarity=0.160 Sum_probs=117.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-------C-C----CCCceEEEEcCCccc-CCCCCHHHHH
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-------S-E----MPYGSYGFVERETTL-IGSLTVREYL 203 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~-------~-~----~~~~~~~yv~Q~~~l-~~~lTV~E~l 203 (513)
.+++|+||||||||||+++|++.+.+.. |++...+.. . . ...-.+.|..|++.. .-..++.+..
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~---~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKS---SHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCc---ccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 3999999999999999999999876542 555443311 0 0 001123454444221 0011111111
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCChhH--------------Hhhhhc--CCCCCCCCCHHHHHHHHHHHHHhhC--
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDY--------------ANKLIG--GHCYMKGLPCGERRRVRIARELVMR-- 265 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~--------------~~~~vg--~~~~~~~LSGGqrqRv~IAraL~~~-- 265 (513)
. .+..... ....+.++++++.+|+... .+..+. -...+..||||||||++||++++.+
T Consensus 100 ~---~~~ingk-~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~ 175 (247)
T cd03275 100 S---SYRINGK-VVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSY 175 (247)
T ss_pred e---EEEECCE-EecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhcc
Confidence 0 0111111 1223456788888888522 111100 0112368999999999999999975
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 266 --PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 266 --P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
|+++||||||+|||+..+..+.+.|++++++|.+||+++|++ ++...||++++|..
T Consensus 176 ~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 176 QPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 899999999999999999999999999987789999988884 56789999999963
No 392
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.89 E-value=2.9e-22 Score=211.10 Aligned_cols=205 Identities=16% Similarity=0.239 Sum_probs=162.8
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
...++++++++.-++. +..+++|+|+.|+.|+-+.|.||||||||+|+|+|+|+.|..+ |.+..-.+.. .+
T Consensus 431 Dn~i~~e~v~l~tPt~---g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~---G~l~k~~~~~---~~ 501 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN---GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTG---GKLTKPTDGG---PK 501 (659)
T ss_pred cceEEeeeeeecCCCC---CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCC---CeEEecccCC---CC
Confidence 4679999999987642 5678999999999999999999999999999999999988654 8887543321 14
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC------CCCCCCHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC------YMKGLPCGERRRV 256 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~------~~~~LSGGqrqRv 256 (513)
.+-|+||.|.+- .-|.||.+.|+..---+......++.+.+.|+.++|.++.++.- |.+ +...||+||+||+
T Consensus 502 ~lfflPQrPYmt-~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~g-gld~~~~~dW~dvLS~GEqQRL 579 (659)
T KOG0060|consen 502 DLFFLPQRPYMT-LGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREG-GLDQQVDWDWMDVLSPGEQQRL 579 (659)
T ss_pred ceEEecCCCCcc-ccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhC-CCCchhhccHHhhcCHHHHHHH
Confidence 588999999765 44999999886321111111234567889999999999887753 333 3466999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
+.||.+.++|++-||||-||++|......+.+.+++ .|.|.|-+.|.. .+.++-|.++-|+.
T Consensus 580 a~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRk--SL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRK--SLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHH--HHHhhhhEEEEecC
Confidence 999999999999999999999999999999888766 588888877765 46677788888864
No 393
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.87 E-value=1.7e-21 Score=182.13 Aligned_cols=209 Identities=21% Similarity=0.272 Sum_probs=158.8
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (513)
...+++.++.|+|+. ..+++-|+|+.++.|.-..++|.||||||||||+|+|-.--.. |.|.++|++.-.
T Consensus 11 ~~aievsgl~f~y~~----~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~---~~v~VlgrsaFhDt~ 83 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKV----SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGG---GVVQVLGRSAFHDTS 83 (291)
T ss_pred cceEEEeccEEeccc----CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccC---CeEEEcCcCcccccc
Confidence 357899999999963 4589999999999999999999999999999999999865554 899999975211
Q ss_pred --CCceEEEEcC----------CcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCC
Q 010314 180 --PYGSYGFVER----------ETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKG 247 (513)
Q Consensus 180 --~~~~~~yv~Q----------~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~ 247 (513)
......|+-- +-.+...+++.+.| |+. ... ..++-+++++.+.+. + .+..+.
T Consensus 84 l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV----~g~---dp~Rre~LI~iLDId-l-------~WRmHk 147 (291)
T KOG2355|consen 84 LESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGV----GGD---DPERREKLIDILDID-L-------RWRMHK 147 (291)
T ss_pred ccccCceeEecccccccccccccccccccccHHHHH-hhc----cCC---ChhHhhhhhhheecc-c-------eEEEee
Confidence 1112334322 22233356666555 321 111 113445566666553 1 234568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
+|-|||+||.|++-|+..-++|+|||-|--||..++..+++.+++-++ +|.|||..||-- +-+.....+++.|+.|++
T Consensus 148 vSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wpthl~yi~~Gkl 226 (291)
T KOG2355|consen 148 VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWPTHLVYIKSGKL 226 (291)
T ss_pred ccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcchhEEEecCCee
Confidence 999999999999999999999999999999999999999999999885 489999988875 467889999999999999
Q ss_pred EEEeChHHH
Q 010314 327 LFFGETLAC 335 (513)
Q Consensus 327 v~~G~~~~~ 335 (513)
+-.-+.+++
T Consensus 227 ~~~l~~~~i 235 (291)
T KOG2355|consen 227 VDNLKYQKI 235 (291)
T ss_pred eeccccchh
Confidence 875544443
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2.1e-22 Score=209.74 Aligned_cols=203 Identities=22% Similarity=0.225 Sum_probs=142.4
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
+..|...++++.| +++.+|.+-++++..|..+||+|+||+|||||||+|+. |.|.....+.+. +
T Consensus 78 ~~Di~~~~fdLa~-----G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~---------~~v~~f~veqE~--~ 141 (582)
T KOG0062|consen 78 SKDIHIDNFDLAY-----GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN---------GQVSGFHVEQEV--R 141 (582)
T ss_pred ccceeeeeeeeee-----cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh---------cCcCccCchhhe--e
Confidence 4578999999998 45689999999999999999999999999999999986 333322211100 0
Q ss_pred eEEEEcCC-cccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 183 SYGFVERE-TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 183 ~~~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
-.|++-. +.+...+.+.+.+.-...+... ....+...++|..+|..+ ...+.+ +.||||-|-|+++||
T Consensus 142 -g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~---~~l~ei~~~~L~glGFt~emq~~pt------~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 142 -GDDTEALQSVLESDTERLDFLAEEKELLAG---LTLEEIYDKILAGLGFTPEMQLQPT------KSLSGGWRMRLALAR 211 (582)
T ss_pred -ccchHHHhhhhhccHHHHHHHHhhhhhhcc---chHHHHHHHHHHhCCCCHHHHhccc------cccCcchhhHHHHHH
Confidence 0122211 1222233333333221111100 022333444888999875 444433 599999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChHHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLAC 335 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~ 335 (513)
||..+|+||||||||+.||..+..-+-+.|+.+. .|+|+++|+ +..+-..|..|+.+++-++- |.|.-++.
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~---~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK---ITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC---ceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 9999999999999999999999999999887763 688887776 46788899999999887763 45665543
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.86 E-value=1.5e-21 Score=187.45 Aligned_cols=146 Identities=17% Similarity=0.143 Sum_probs=109.2
Q ss_pred eeeeeeEEeCCc-EEEEEcCCCCcHHHHHHHHH--------cCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCC
Q 010314 126 VKSSNGYALPGT-MTVIMGPAKSGKSTLLRAIA--------GRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGS 196 (513)
Q Consensus 126 L~~vs~~i~~Ge-~~aliGpsGsGKSTLl~~L~--------G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~ 196 (513)
+-++|+++.+|+ +++|+|||||||||||++|+ |...|.. .. ..++|+.|...
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~---~~------------~~~~~~~~~~~---- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA---EG------------SSLPVFENIFA---- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc---cc------------ccCcCccEEEE----
Confidence 457888999994 89999999999999999998 4332210 00 11233333211
Q ss_pred CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010314 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (513)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs 276 (513)
.++..+..+.. ...+|+||||++.|++++ .+|+++|+|||++
T Consensus 78 -------------------------------~lg~~~~l~~~------~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~ 119 (200)
T cd03280 78 -------------------------------DIGDEQSIEQS------LSTFSSHMKNIARILQHA-DPDSLVLLDELGS 119 (200)
T ss_pred -------------------------------ecCchhhhhcC------cchHHHHHHHHHHHHHhC-CCCcEEEEcCCCC
Confidence 11111222222 237999999999999884 8999999999999
Q ss_pred CCCHHHHHHHH-HHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 277 HLDSVSALLMM-VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 277 gLD~~~~~~i~-~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
|||+..+..++ ..++.+.+.|.++|+++|+ .++..+||++++|.+|++++.+
T Consensus 120 glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~--~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 120 GTDPVEGAALAIAILEELLERGALVIATTHY--GELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEECCH--HHHHHHHhcCCCeEEEEEEEec
Confidence 99999999996 4788887778999998886 3678999999999999998874
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=5.6e-21 Score=199.16 Aligned_cols=199 Identities=20% Similarity=0.246 Sum_probs=154.7
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
.+.+++.++++.|.... + +++.++++.+..-.-.+++|+||+||||++|++.|-+.|.. |.+.+.+ +.
T Consensus 360 ~p~l~i~~V~f~y~p~~-y--~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~r---gi~~~~~------r~ 427 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSE-Y--QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTR---GIVGRHP------RL 427 (582)
T ss_pred CCeeEEEeeeccCCCcc-h--hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccc---ceeeecc------cc
Confidence 45799999999885321 1 68999999999999999999999999999999999777654 7776654 35
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+++|-.|...=+-.+.|.+.-... .. .|. ..++.+++-+..+||. +++... +.+||||||=||++|..
T Consensus 428 ri~~f~Qhhvd~l~~~v~~vd~~~-~~-~pG---~~~ee~r~hl~~~Gl~g~la~~s------i~~LSGGQKsrvafA~~ 496 (582)
T KOG0062|consen 428 RIKYFAQHHVDFLDKNVNAVDFME-KS-FPG---KTEEEIRRHLGSFGLSGELALQS------IASLSGGQKSRVAFAAC 496 (582)
T ss_pred eecchhHhhhhHHHHHhHHHHHHH-Hh-CCC---CCHHHHHHHHHhcCCCchhhhcc------ccccCCcchhHHHHHHH
Confidence 688888864333234444332222 12 222 2345688889999997 455443 34899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
...+|.+|+|||||+.||..+-..+.+.|+.+. | .||+++|+. +.+..+|+.+.+.++|++.-
T Consensus 497 ~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--G-GVv~VSHd~-~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 497 TWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN--G-GVVLVSHDE-EFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred hcCCCcEEEecCCCccccHHHHHHHHHHHHhcC--C-cEEEEECcH-HHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999888888763 3 466657775 68899999999999999865
No 397
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.85 E-value=2.1e-21 Score=199.58 Aligned_cols=169 Identities=25% Similarity=0.327 Sum_probs=128.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCCC-------CC----ceEEEEcCCc
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSEM-------PY----GSYGFVERET 191 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~-----------i~G~~~~~-------~~----~~~~yv~Q~~ 191 (513)
++|++++|+|+||-||||-+|+|+|.+.|.- |+-. +.|...+. .. ...-||.--+
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PNL---G~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPNL---GRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccCC---CCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 4899999999999999999999999999874 3321 11111000 00 1122333333
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 010314 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFI 271 (513)
Q Consensus 192 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLll 271 (513)
..+. -||.|.|.-. ..+...+++++.++|.+..++-+. +|||||.|||+||.+++.+.+++++
T Consensus 175 k~~K-G~v~elLk~~----------de~g~~devve~l~L~nvl~r~v~------~LSGGELQr~aIaa~l~rdADvY~F 237 (591)
T COG1245 175 KVVK-GKVGELLKKV----------DERGKFDEVVERLGLENVLDRDVS------ELSGGELQRVAIAAALLRDADVYFF 237 (591)
T ss_pred HHhc-chHHHHHHhh----------hhcCcHHHHHHHhcchhhhhhhhh------hcCchHHHHHHHHHHHhccCCEEEE
Confidence 3332 2677666321 122357899999999999999776 9999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
|||||-||...+..+.+.+++|++.+++||++-|+. ..+--++|-|.++..
T Consensus 238 DEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 238 DEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred cCCcccccHHHHHHHHHHHHHHhccCCeEEEEechH-HHHHHhhheeEEEec
Confidence 999999999999999999999998899999976664 566678999999874
No 398
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=4.6e-21 Score=195.56 Aligned_cols=192 Identities=24% Similarity=0.328 Sum_probs=147.5
Q ss_pred CCceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 010314 102 AGASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (513)
Q Consensus 102 ~~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (513)
..+.|-+.|++|.|++ .++++++++|-|.-...+||+||||.||||||++|.|-+.|.. |+..-|- +
T Consensus 583 ~PPvLGlH~VtFgy~g----qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~---GE~RKnh------r 649 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPG----QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPND---GELRKNH------R 649 (807)
T ss_pred CCCeeecccccccCCC----CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCc---chhhccc------e
Confidence 3467899999999963 4578999999999999999999999999999999999999874 7665332 2
Q ss_pred ceEEEEcCCc--ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 182 GSYGFVERET--TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 182 ~~~~yv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
-+|||..|.. .|...-|.-|.|.-. +.+| .+.....|-.+||...+++. .+..|||||+-||++|
T Consensus 650 L~iG~FdQh~~E~L~~Eetp~EyLqr~--FNlp------yq~ARK~LG~fGL~sHAHTi-----kikdLSGGQKaRVala 716 (807)
T KOG0066|consen 650 LRIGWFDQHANEALNGEETPVEYLQRK--FNLP------YQEARKQLGTFGLASHAHTI-----KIKDLSGGQKARVALA 716 (807)
T ss_pred eeeechhhhhHHhhccccCHHHHHHHh--cCCC------hHHHHHHhhhhhhhhccceE-----eeeecCCcchHHHHHH
Confidence 3589988863 455555666666321 2233 23456778899998777764 4579999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
..-+..|+||||||||++||..+...+.+.|++.. | .||+++|+.. .+.+---.++|+.+
T Consensus 717 eLal~~PDvlILDEPTNNLDIESIDALaEAIney~--G-gVi~VsHDeR-Li~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 717 ELALGGPDVLILDEPTNNLDIESIDALAEAINEYN--G-GVIMVSHDER-LIVETDCNLWVVEN 776 (807)
T ss_pred HHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc--C-cEEEEecccc-eeeecCceEEEEcc
Confidence 99999999999999999999999999988888763 3 5666688764 44444345555544
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=6.8e-21 Score=184.77 Aligned_cols=82 Identities=16% Similarity=0.126 Sum_probs=69.1
Q ss_pred CCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-C-CeEEEEEeCChHHHHhcCC-
Q 010314 244 YMKGLPCGERRRVRIAREL----VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-G-CTLLFTINQSSTEVFGLFD- 316 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL----~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g-~tvi~t~h~~~~~i~~~~D- 316 (513)
.+.+||||||||+.+|++| +.+|+++|+||||+|||+.++..+++.|++++++ | .++|+++||.. .+...||
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCcccCc
Confidence 4569999999999887654 5799999999999999999999999999999866 5 57888888864 5566666
Q ss_pred -EEEEEeCCeE
Q 010314 317 -RICLLSNGNT 326 (513)
Q Consensus 317 -~v~vL~~G~i 326 (513)
+|++|++|+-
T Consensus 202 ~~v~~l~~g~~ 212 (213)
T cd03277 202 MTVLCVYNGPH 212 (213)
T ss_pred eEEEEEecCcc
Confidence 7888898873
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.82 E-value=2.1e-19 Score=169.64 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 248 LPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 248 LSGGqrqRv~IAraL~----~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
||||||||++||++|+ .+|+++|+|||+++||+..+..+.+.|+++++.|.++|+++|++ +....+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~--~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK--EMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH--HHHhhCCeEEEEEE
Confidence 8999999999999996 69999999999999999999999999999987788999999986 34568999999964
No 401
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.82 E-value=1.7e-19 Score=183.70 Aligned_cols=184 Identities=28% Similarity=0.369 Sum_probs=137.0
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCCCCceEEEEcCCc-ccCCC
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVNGAKSEMPYGSYGFVERET-TLIGS 196 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~-----~~~G~I~i~G~~~~~~~~~~~yv~Q~~-~l~~~ 196 (513)
..+|+|||+.++||++++|+|+|||||||||++|+|...... ..+|.|.+--.. ..+.+|-+. .-|..
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt------~~a~iPge~Ep~f~~ 469 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT------VSALIPGEYEPEFGE 469 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc------hhhccCcccccccCc
Confidence 469999999999999999999999999999999999753211 124666553211 112333321 11234
Q ss_pred CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 010314 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275 (513)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPT 275 (513)
.|+.|.+.- .+. .-....++|...||.+- +-+ ....+||.|||.|+.||.+|..+|.+++.||-.
T Consensus 470 ~tilehl~s-----~tG----D~~~AveILnraGlsDAvlyR-----r~f~ELStGQKeR~KLAkllaerpn~~~iDEF~ 535 (593)
T COG2401 470 VTILEHLRS-----KTG----DLNAAVEILNRAGLSDAVLYR-----RKFSELSTGQKERAKLAKLLAERPNVLLIDEFA 535 (593)
T ss_pred hhHHHHHhh-----ccC----chhHHHHHHHhhccchhhhhh-----ccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhh
Confidence 566666521 111 12345688999999753 222 134599999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhc-CCEEEEEeCCeEE
Q 010314 276 YHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGL-FDRICLLSNGNTL 327 (513)
Q Consensus 276 sgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv 327 (513)
|.||+.++..+.+-|.+++++ |.|+++++|++ +.+-.+ -|+++++.-|++.
T Consensus 536 AhLD~~TA~rVArkiselaRe~giTlivvThrp-Ev~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 536 AHLDELTAVRVARKISELAREAGITLIVVTHRP-EVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHhccCCceeEEeeccccc
Confidence 999999999999999999865 99999999997 456666 7899888777653
No 402
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.81 E-value=5.7e-20 Score=191.54 Aligned_cols=184 Identities=20% Similarity=0.276 Sum_probs=143.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..+.++|+-+-.+ .+..++..++|.+++|-.+.|+||||||||+|+++|.|+.|... |...+ .+...
T Consensus 480 ~gI~lenIpvItP----~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~---g~L~~------P~~~~ 546 (728)
T KOG0064|consen 480 NGIILENIPVITP----AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYN---GLLSI------PRPNN 546 (728)
T ss_pred cceEEecCceecc----CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccC---Ceeec------CCCcc
Confidence 4578888877665 34568999999999999999999999999999999999988642 54432 22345
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHH---hcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC----CCCCCCHHHHHHH
Q 010314 184 YGFVERETTLIGSLTVREYLYYSAL---LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC----YMKGLPCGERRRV 256 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~---~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~----~~~~LSGGqrqRv 256 (513)
+-|+||.|.+- .-|.+|.+.|+-. ++.. .-.++..+.+|+.+.|++++.+-.| -+ +-..||||||||+
T Consensus 547 mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~k---g~~d~dL~~iL~~v~L~~i~qr~~g-~da~~dWkd~LsgGekQR~ 621 (728)
T KOG0064|consen 547 IFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRK---GYTDQDLEAILDIVHLEHILQREGG-WDAVRDWKDVLSGGEKQRM 621 (728)
T ss_pred eEeccCCCccC-cCcccceeecCCcHHHHHhc---CCCHHHHHHHHHHhhHHHHHHhccC-hhhhccHHhhccchHHHHH
Confidence 89999999876 5688888766421 1100 1124557888999999888776432 22 3345999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCCh
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
++||.+-++|+.-+|||-||+..+.....+.+..+. .|.+.+-++|.|+
T Consensus 622 ~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrps 670 (728)
T KOG0064|consen 622 GMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPS 670 (728)
T ss_pred HHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCcc
Confidence 999999999999999999999998888888877654 4889998899885
No 403
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.80 E-value=2e-19 Score=172.70 Aligned_cols=146 Identities=18% Similarity=0.120 Sum_probs=102.0
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHH
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
.+++|+++. .|++++|+||||||||||+|+|+|...- ...|.+... . .+++|.+.+|+.+|+.|++
T Consensus 15 ~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~l--------~~~G~~v~a--~--~~~~q~~~l~~~~~~~d~l 80 (199)
T cd03283 15 RVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVIL--------AQAGAPVCA--S--SFELPPVKIFTSIRVSDDL 80 (199)
T ss_pred eecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHHH--------HHcCCEEec--C--ccCcccceEEEeccchhcc
Confidence 466776665 4799999999999999999999986421 122332211 1 3556777889999999999
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~ 283 (513)
.++.. .. .....++.++++.+++ .+|+++|+|||++|||+..+
T Consensus 81 ~~~~s----~~-~~e~~~~~~iL~~~~~--------------------------------~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 81 RDGIS----YF-YAELRRLKEIVEKAKK--------------------------------GEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred ccccC----hH-HHHHHHHHHHHHhccC--------------------------------CCCeEEEEecccCCCCHHHH
Confidence 66421 11 1122345555555431 68999999999999999999
Q ss_pred HHHH-HHHHHHHHcCCeEEEEEeCChHHHHhc--CCEEEEE
Q 010314 284 LLMM-VTLKKLASTGCTLLFTINQSSTEVFGL--FDRICLL 321 (513)
Q Consensus 284 ~~i~-~~L~~l~~~g~tvi~t~h~~~~~i~~~--~D~v~vL 321 (513)
..+. ..++.+.+.|.++|+++|++ +.+..+ .++|-.+
T Consensus 124 ~~l~~~ll~~l~~~~~tiiivTH~~-~~~~~~~~~~~v~~~ 163 (199)
T cd03283 124 QAASAAVLKFLKNKNTIGIISTHDL-ELADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCcH-HHHHhhhcCCCeEEE
Confidence 8775 47888877789999988886 355444 4455544
No 404
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.79 E-value=2.4e-18 Score=204.80 Aligned_cols=127 Identities=18% Similarity=0.271 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHH-hhhhcCCCCCCCCCHHHHHHHHHHHHHhhC---CCEEEE
Q 010314 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYA-NKLIGGHCYMKGLPCGERRRVRIARELVMR---PHVLFI 271 (513)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~~~vg~~~~~~~LSGGqrqRv~IAraL~~~---P~iLll 271 (513)
.|||.|.+.|... ..+-.+.-+.|..+||..+. .+ ....|||||.||+-||..|..+ +.+++|
T Consensus 1660 ~mtv~ea~~~F~~-------~~~i~~~L~~L~~vGLgYl~LGq------~~~tLSGGE~qRikLa~~l~~~~~~~~lyil 1726 (1809)
T PRK00635 1660 QTPIEEVAETFPF-------LKKIQKPLQALIDNGLGYLPLGQ------NLSSLSLSEKIAIKIAKFLYLPPKHPTLFLL 1726 (1809)
T ss_pred cCCHHHHHHHhhc-------cHHHHHHHHHHHHcCCCeeeCCC------cCCccCchHHHHHHHHHHHhcCCCCCcEEEE
Confidence 3566666655321 01223345678888987542 22 2347999999999999999876 789999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHHH
Q 010314 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (513)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (513)
||||+||++.....+++.|++|.+.|.|||++.|++ ++...||.|+-| +.|+||+.|+|+++..
T Consensus 1727 DEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1727 DEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999999999999999999987775 566779999999 3579999999998764
No 405
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.78 E-value=6.7e-19 Score=171.84 Aligned_cols=152 Identities=21% Similarity=0.221 Sum_probs=113.0
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE-EEcCCcccCCCCCHHH
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG-FVERETTLIGSLTVRE 201 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~E 201 (513)
+.+.+|+++...+|++++|.||||+|||||+++++=. .- ..++| |||.+...++
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-~~------------------la~~g~~vpa~~~~~~------ 71 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-VL------------------MAQIGCFVPCDSADIP------ 71 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-HH------------------HHHhCCCcCcccEEEe------
Confidence 3578999999999999999999999999999998721 00 01112 3333221111
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CC
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL--VMRPHVLFIDEP---LY 276 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL--~~~P~iLllDEP---Ts 276 (513)
.+++++..+++.+... .++|.|+++++.+++++ +.+|+++||||| |+
T Consensus 72 -------------------~~~~il~~~~l~d~~~---------~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~ 123 (222)
T cd03285 72 -------------------IVDCILARVGASDSQL---------KGVSTFMAEMLETAAILKSATENSLIIIDELGRGTS 123 (222)
T ss_pred -------------------ccceeEeeeccccchh---------cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCC
Confidence 1233455566654332 38999999999999999 899999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 277 HLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
+||+..... ..++.+.+ .|.++|++||. .++.++||++..+++|++...+.
T Consensus 124 ~lD~~~~~~--~il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 124 TYDGFGLAW--AIAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred hHHHHHHHH--HHHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999988754 33455554 48899998885 57899999999999999987764
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.78 E-value=1.4e-18 Score=161.32 Aligned_cols=75 Identities=17% Similarity=0.219 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 247 GLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~----~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
+||+||+||++||++|+. +|+++|+|||++|||+.....+.+.|.++..++.++|+++|++ ++...+|+++.|.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 599999999999999997 7899999999999999999999999998865588999988876 4556799999996
Q ss_pred C
Q 010314 323 N 323 (513)
Q Consensus 323 ~ 323 (513)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 3
No 407
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.3e-18 Score=175.22 Aligned_cols=76 Identities=20% Similarity=0.161 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 247 GLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~----~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
.|||||+||++||++++. +|+++|+||||++||+..+..+++.|+++.+ +.|+|+++|++. +..+||++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997664 9999999999999999999999999999864 789999999863 568999999998
Q ss_pred CCe
Q 010314 323 NGN 325 (513)
Q Consensus 323 ~G~ 325 (513)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 764
No 408
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.77 E-value=7.3e-18 Score=183.83 Aligned_cols=128 Identities=23% Similarity=0.296 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC---CEEEEe
Q 010314 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP---HVLFID 272 (513)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P---~iLllD 272 (513)
.|||.|...|.... | .-.+.-+.|..+||..+.- | .....|||||.|||-+|.+|..+. -+++||
T Consensus 783 ~MTveEA~~FF~~~--p-----~I~rkLqtL~dVGLgYi~L---G--QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLD 850 (935)
T COG0178 783 DMTVEEALEFFEAI--P-----KIARKLQTLVDVGLGYIKL---G--QPATTLSGGEAQRVKLAKELSKRSTGKTLYILD 850 (935)
T ss_pred hccHHHHHHHHhcc--h-----HHHHHHHHHHHcCcceEec---C--CccccccchHHHHHHHHHHHhhccCCCeEEEeC
Confidence 35666666554311 1 1223445677788864421 1 133589999999999999999887 899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHHH
Q 010314 273 EPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (513)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (513)
|||+||-..-..++++.|.+|.+.|-|||++-|.. ++...||.|+-| ..|+||+.|+|+++..
T Consensus 851 EPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 851 EPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999999999999999999999999999976664 588999999998 4579999999999865
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.76 E-value=5.2e-18 Score=194.16 Aligned_cols=134 Identities=21% Similarity=0.264 Sum_probs=109.0
Q ss_pred CCCCHHHHHHHHHHhcCCCch--------hhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 195 GSLTVREYLYYSALLQLPGFF--------CQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~--------~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
..+||.|.+.|...+...... .+..++++ .|+.+||.++ .++.+. .|||||+|||.||++|+.+
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~------~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAG------TLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchh------hCCHHHHHHHHHHHHHhhC
Confidence 468999999885544332210 12233443 6888888765 566554 9999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHHH
Q 010314 266 P--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (513)
Q Consensus 266 P--~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (513)
| +||||||||+|||+..+..++++|++|++.|.|||+++|++. ++ ..||+|++| ++|++++.|+++++..
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 7 999999999999999999999999999888999999888864 55 469999999 9999999999988743
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.75 E-value=1.4e-18 Score=167.05 Aligned_cols=153 Identities=20% Similarity=0.206 Sum_probs=102.8
Q ss_pred eeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHH
Q 010314 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSA 207 (513)
Q Consensus 129 vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~-~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~ 207 (513)
.++.+.+|++++|+|||||||||||++|++..- .. .|... ......++|..| ++..+...+++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~---~g~~~------~~~~~~i~~~dq---i~~~~~~~d~i---- 85 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQ---IGCFV------PAESASIPLVDR---IFTRIGAEDSI---- 85 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHH---cCCCc------cccccccCCcCE---EEEEecCcccc----
Confidence 345556899999999999999999999995421 11 12111 001112333322 12111111111
Q ss_pred HhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 010314 208 LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMM 287 (513)
Q Consensus 208 ~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~ 287 (513)
.. ....++++++| +..+.+++.+|+++|+||||+|||+.....+.
T Consensus 86 ----------------------------~~------~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 86 ----------------------------SD------GRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred ----------------------------cC------CceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 11 11255666655 66667888999999999999999999988876
Q ss_pred H-HHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 288 V-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 288 ~-~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
. +++.+.+.+.++|+++|++ ++...++++..+..|++...++..+
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 5 5677777788999988864 5677899999999999988876543
No 411
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=2.1e-18 Score=176.35 Aligned_cols=207 Identities=21% Similarity=0.281 Sum_probs=143.8
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC---CCCCCCceeEEEECCEeCC-
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR---LPHSARMYGEVFVNGAKSE- 178 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~---~~~~~~~~G~I~i~G~~~~- 178 (513)
.+.|.++|.+.+. .++.++.|.|+.|-.|..++|+||||-||||||+.|+.+ +||. =.|++..+.+.
T Consensus 262 a~DIKiEnF~ISA-----~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn----IDvLlCEQEvva 332 (807)
T KOG0066|consen 262 AMDIKIENFDISA-----QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN----IDVLLCEQEVVA 332 (807)
T ss_pred cccceeeeeeeec-----ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC----CceEeeeeeeee
Confidence 4568888888776 356789999999999999999999999999999999987 3443 22333322110
Q ss_pred -----------CCCceEEEEcCCcc-----cCCCCCHHHHHHHH-HHhcCCCchhhHHHHHHHHHHHcCChhH-Hhhhhc
Q 010314 179 -----------MPYGSYGFVERETT-----LIGSLTVREYLYYS-ALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIG 240 (513)
Q Consensus 179 -----------~~~~~~~yv~Q~~~-----l~~~lTV~E~l~~~-~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~vg 240 (513)
...++...+..+.. --...|+.|-+.-. ..++.... .....+..++|.-+|...- .++.
T Consensus 333 d~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA-~sAEarARRILAGLGFskEMQ~rP-- 409 (807)
T KOG0066|consen 333 DSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGA-DSAEARARRILAGLGFSKEMQERP-- 409 (807)
T ss_pred cCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcc-ccchhHHHHHHhhcCCChhHhcCC--
Confidence 00011111111110 11234555544221 11221111 1233456777887887643 3432
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEE
Q 010314 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL 320 (513)
Q Consensus 241 ~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~v 320 (513)
...+|||-|-||++||||..+|-+|.|||||++||.....-+-+.|+.+.+ |.++++|+- ..+-..|..|+.
T Consensus 410 ----t~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkK---TLLIVSHDQ-gFLD~VCtdIIH 481 (807)
T KOG0066|consen 410 ----TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQ-GFLDSVCTDIIH 481 (807)
T ss_pred ----ccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhh---eeEEEeccc-chHHHHHHHHhh
Confidence 247999999999999999999999999999999999999999999988864 888878876 578899999999
Q ss_pred EeCCeEEEE
Q 010314 321 LSNGNTLFF 329 (513)
Q Consensus 321 L~~G~iv~~ 329 (513)
|++-++.|+
T Consensus 482 LD~qkLhyY 490 (807)
T KOG0066|consen 482 LDNQKLHYY 490 (807)
T ss_pred hhhhhhhhh
Confidence 999888765
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.75 E-value=1.1e-17 Score=191.05 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=105.2
Q ss_pred CCCCHHHHHHHHHHhcCCCch--------hhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 195 GSLTVREYLYYSALLQLPGFF--------CQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~--------~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
-.|||.|.+.|...+...... .+...++ +.|..+||..+ .++. +.+|||||+|||.||++|+.+
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~------~~tLSGGE~QRv~LA~aL~~~ 505 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRA------AGTLSGGEAQRIRLATQIGSG 505 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCC------cCcCCHHHHHHHHHHHHHhhC
Confidence 368899988776554322110 0111222 33667777654 4554 459999999999999999998
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHH
Q 010314 266 P--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACL 336 (513)
Q Consensus 266 P--~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~ 336 (513)
| +++||||||+|||+.....+++.|++|+++|.|||+++|++ +.+ ..||+|++| ++|++++.|+++++.
T Consensus 506 ~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 506 LTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 6 89999999999999999999999999998899999988886 455 589999999 899999999998864
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.7e-16 Score=159.45 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=64.3
Q ss_pred CCCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcC
Q 010314 245 MKGLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLF 315 (513)
Q Consensus 245 ~~~LSGGqrqRv~IAraL~---------~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~ 315 (513)
..-+|+||||+++||++|+ .+|+++++||||++||+..+..+++.|+++. .+++++||. ..+..+|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~-~~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDL-ADFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCc-hhccchh
Confidence 3458999999999999985 7999999999999999999999999998753 355556665 3566777
Q ss_pred ---CEEEEEeCCeE
Q 010314 316 ---DRICLLSNGNT 326 (513)
Q Consensus 316 ---D~v~vL~~G~i 326 (513)
++++.|++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999985
No 414
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.67 E-value=2.2e-16 Score=153.50 Aligned_cols=155 Identities=18% Similarity=0.142 Sum_probs=105.8
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHH
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
.+.+|+++...+ ++++|+||||||||||||+|++..-. |. .|.........++|+.| +++.+++.+++
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l-----~~---~g~~vp~~~~~i~~~~~---i~~~~~~~~~l 86 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL-----AQ---IGSFVPASKAEIGVVDR---IFTRIGASDDL 86 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH-----hc---cCCeeccccceecceee---EeccCCchhhh
Confidence 477888888877 99999999999999999999875322 21 12222222245666654 66777887777
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCH--HHHHHHHHHHHHhhCCCEEEEeCC---CCCC
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC--GERRRVRIARELVMRPHVLFIDEP---LYHL 278 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSG--GqrqRv~IAraL~~~P~iLllDEP---TsgL 278 (513)
..+ .|. .|+++++-+...+.+|+++||||| |++|
T Consensus 87 s~g-----------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~l 125 (216)
T cd03284 87 AGG-----------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTY 125 (216)
T ss_pred ccC-----------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChH
Confidence 331 111 122233333333579999999999 8888
Q ss_pred CHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 279 DSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 279 D~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|.... ....++.+.+. +.++|++||+. ++.+++|++..+.+|++...+..+++
T Consensus 126 D~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 126 DGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 87552 33455555655 88999988874 67889999888889998887766554
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.67 E-value=3.4e-16 Score=150.82 Aligned_cols=135 Identities=19% Similarity=0.207 Sum_probs=96.2
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHH
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (513)
+.+.+|+++.+.+|++++|+||||+|||||+++|+++.-- +++ | .|+ +..++.+++.|+
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-----a~~---G----------~~v---pa~~~~l~~~d~ 74 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM-----AQI---G----------CFV---PAEYATLPIFNR 74 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH-----HHc---C----------CCc---chhhcCccChhh
Confidence 4689999999999999999999999999999999987311 111 1 122 223445566666
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 010314 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (513)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~ 282 (513)
|.. .++..+..++.. ..+|+|++|+ ..+.+++.+|+++|||||++|+|+..
T Consensus 75 I~~----------------------~~~~~d~~~~~~------S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~ 125 (204)
T cd03282 75 LLS----------------------RLSNDDSMERNL------STFASEMSET-AYILDYADGDSLVLIDELGRGTSSAD 125 (204)
T ss_pred eeE----------------------ecCCccccchhh------hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHH
Confidence 632 112221122222 2789999975 55567889999999999999999977
Q ss_pred HHHH-HHHHHHHHHcCCeEEEEEeCC
Q 010314 283 ALLM-MVTLKKLASTGCTLLFTINQS 307 (513)
Q Consensus 283 ~~~i-~~~L~~l~~~g~tvi~t~h~~ 307 (513)
...+ ...++.+.+.|.++|++||+.
T Consensus 126 ~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 126 GFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECChH
Confidence 6665 456777777799999988875
No 416
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.64 E-value=2.3e-15 Score=154.20 Aligned_cols=177 Identities=24% Similarity=0.289 Sum_probs=135.1
Q ss_pred ceeeeeeeeEEeCC-----cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCC
Q 010314 123 DKVVKSSNGYALPG-----TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSL 197 (513)
Q Consensus 123 ~~iL~~vs~~i~~G-----e~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~l 197 (513)
+..+.+..+.|+.| |++..+|+||.||||++++++|+++|+. .|+|-. -.++|=+|...-=...
T Consensus 349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~--~~e~p~---------lnVSykpqkispK~~~ 417 (592)
T KOG0063|consen 349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDE--GGEIPV---------LNVSYKPQKISPKREG 417 (592)
T ss_pred eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCc--cCcccc---------cceeccccccCccccc
Confidence 45667777777766 5789999999999999999999999874 344432 2356667754333356
Q ss_pred CHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 010314 198 TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYH 277 (513)
Q Consensus 198 TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsg 277 (513)
||++.+.--.+- .......+.++++-+.+++..|+-+. +|||||.|||+||.+|=..+++.+.|||.+-
T Consensus 418 tvR~ll~~kIr~-----ay~~pqF~~dvmkpL~ie~i~dqevq------~lSggelQRval~KOGGKpAdvYliDEpsAy 486 (592)
T KOG0063|consen 418 TVRQLLHTKIRD-----AYMHPQFVNDVMKPLQIENIIDQEVQ------GLSGGELQRVALALCLGKPADVYLIDEPSAY 486 (592)
T ss_pred hHHHHHHHHhHh-----hhcCHHHHHhhhhhhhHHHHHhHHhh------cCCchhhHHHHHHHhcCCCCceEEecCchhh
Confidence 898877432110 01234568888999999999988765 9999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-HcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 278 LDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 278 LD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
||+..+..--..+++.- ..++|-.++-|+. ...--++|||++..
T Consensus 487 lDSeQRi~AskvikRfilhakktafvVEhdf-ImaTYladrvivf~ 531 (592)
T KOG0063|consen 487 LDSEQRIIASKVIKRFILHAKKTAFVVEHDF-IMATYLADRVIVFE 531 (592)
T ss_pred cChHHHHHHHHHHHHHHHhccchhhhhhhHH-HHHHhhcceeEEEe
Confidence 99999999888888875 4567777766654 34456799988664
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.59 E-value=6.8e-15 Score=147.36 Aligned_cols=137 Identities=24% Similarity=0.248 Sum_probs=91.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC------CceEEEEcCCcccCCCCCHHHHHHHHHHhc
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP------YGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~------~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (513)
.-++|+||||||||||+++|+|+++++. |+|.++|+++... ...+++++|.+ +.+.++|.++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~---G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGI---SQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCC---ceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch------
Confidence 5789999999999999999999999875 9999999875311 12245555543 233444433320
Q ss_pred CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 010314 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290 (513)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L 290 (513)
+ ..| ..+.++..+|++|++|||++ ...+..++
T Consensus 182 -------k------------------------------~~~-----~~~~i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 -------K------------------------------AEG-----MMMLIRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred -------H------------------------------HHH-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 0 001 12223336999999999974 33344555
Q ss_pred HHHHHcCCeEEEEEeCChHH-H-----------HhcCCEEEEEeCCeEEEEeChHH
Q 010314 291 KKLASTGCTLLFTINQSSTE-V-----------FGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 291 ~~l~~~g~tvi~t~h~~~~~-i-----------~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
+.+ +.|.++|+++|.+..+ + ..+|||+++|++|+ ..|.+.+
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~ 266 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEA 266 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceee
Confidence 554 3699999999975321 2 26799999999876 5555544
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.54 E-value=2.6e-15 Score=142.55 Aligned_cols=77 Identities=17% Similarity=0.117 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 247 GLPCGERRRVRIARELV--MRPHVLFIDEPLYHLDSVSALLMM-VTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~--~~P~iLllDEPTsgLD~~~~~~i~-~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
.+|+|++| +++++. .+|+++|+|||++|+|+.....+. ..++.+.++ +.++|++||+. ++.+++|+.--+.
T Consensus 61 ~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~ 135 (185)
T smart00534 61 TFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVR 135 (185)
T ss_pred HHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccce
Confidence 68888776 444444 499999999999999999877764 566777764 88999988886 5778887644444
Q ss_pred CCeEEE
Q 010314 323 NGNTLF 328 (513)
Q Consensus 323 ~G~iv~ 328 (513)
+++...
T Consensus 136 ~~~~~~ 141 (185)
T smart00534 136 NLHMSA 141 (185)
T ss_pred EEEEEE
Confidence 444433
No 419
>PRK00064 recF recombination protein F; Reviewed
Probab=99.48 E-value=2.4e-12 Score=134.61 Aligned_cols=79 Identities=19% Similarity=0.289 Sum_probs=65.6
Q ss_pred CCCCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhc
Q 010314 244 YMKGLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL~---------~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (513)
....+|.||+|+++||+.|+ .+|+|||||||+++||+..+..+++.|.++ +..+++|+|+.. .+...
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~ 345 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADL 345 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhh
Confidence 33569999999999999986 799999999999999999999999988764 347788788763 45555
Q ss_pred C--CEEEEEeCCeE
Q 010314 315 F--DRICLLSNGNT 326 (513)
Q Consensus 315 ~--D~v~vL~~G~i 326 (513)
+ ++++.|++|++
T Consensus 346 ~~~~~i~~v~~G~i 359 (361)
T PRK00064 346 LENAKIFHVEQGKI 359 (361)
T ss_pred hccCcEEEEeCCEE
Confidence 3 57999999986
No 420
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.46 E-value=4.3e-13 Score=130.21 Aligned_cols=118 Identities=24% Similarity=0.278 Sum_probs=79.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccC-CCCCHHHHHHHHHHhcCCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI-GSLTVREYLYYSALLQLPG 213 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G--~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~-~~lTV~E~l~~~~~~~~~~ 213 (513)
.+++|.||||+|||||||.|+. .+.. .|...... ...++|..|....+ ...++.+++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~----~G~~v~a~------~~~~~~~d~i~~~l~~~~si~~~~---------- 89 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAH----IGSFVPAD------SATIGLVDKIFTRMSSRESVSSGQ---------- 89 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHh----CCCeeEcC------CcEEeeeeeeeeeeCCccChhhcc----------
Confidence 7899999999999999999984 3322 25443321 13466776643221 111111111
Q ss_pred chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHH
Q 010314 214 FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM-MVTLKK 292 (513)
Q Consensus 214 ~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i-~~~L~~ 292 (513)
..+ .-+.||+++|++++.+|+++|+|||++|+|+.....+ ...++.
T Consensus 90 ------------------S~f---------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~ 136 (213)
T cd03281 90 ------------------SAF---------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEH 136 (213)
T ss_pred ------------------chH---------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHH
Confidence 111 2467899999999999999999999999999765444 568888
Q ss_pred HHHc---CCeEEEEEeCC
Q 010314 293 LAST---GCTLLFTINQS 307 (513)
Q Consensus 293 l~~~---g~tvi~t~h~~ 307 (513)
+.+. +.++|+++|+.
T Consensus 137 l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 137 LLKRGPECPRVIVSTHFH 154 (213)
T ss_pred HHhcCCCCcEEEEEcChH
Confidence 8754 24788888875
No 421
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.45 E-value=1.5e-13 Score=141.06 Aligned_cols=172 Identities=22% Similarity=0.281 Sum_probs=121.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--CceeEEE------ECCEeCCCCC--------c---eEEEEcCCcccC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA--RMYGEVF------VNGAKSEMPY--------G---SYGFVERETTLI 194 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~--~~~G~I~------i~G~~~~~~~--------~---~~~yv~Q~~~l~ 194 (513)
+||++++++|-||-||||-+++|+|.++|.- ...+-.+ +.|..+.... + ..-||.|-+...
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 4899999999999999999999999999863 0011111 1110000000 0 001222211111
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 010314 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (513)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEP 274 (513)
..+|.++|.- ...++..+++++.+.|....++-+. .|||||-||.+||.+.+.+.++.++|||
T Consensus 178 -k~~v~~~l~~----------~~~r~~~~~~~~~~~L~~~~~re~~------~lsggelqrfaia~~~vq~advyMFDEp 240 (592)
T KOG0063|consen 178 -KGTVGSLLDR----------KDERDNKEEVCDQLDLNNLLDREVE------QLSGGELQRFAIAMVCVQKADVYMFDEP 240 (592)
T ss_pred -HHHHHHHHHH----------HhhcccHHHHHHHHHHhhHHHhhhh------hcccchhhhhhhhhhhhhhcceeEecCC
Confidence 1133333311 1122356788888999998888765 9999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
.+-||...+..-...|+.|..-..=||++.|+. +...-+.|-++.|..
T Consensus 241 SsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDL-sVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 241 SSYLDVKQRLKAAITIRSLINPDRYIIVVEHDL-SVLDYLSDFICCLYG 288 (592)
T ss_pred cccchHHHhhhHHHHHHHhhCCCCeEEEEEeec-hHHHhhhcceeEEec
Confidence 999999999999999999987777788877776 466677999999864
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.44 E-value=8.1e-14 Score=135.39 Aligned_cols=73 Identities=25% Similarity=0.263 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 247 GLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~----~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
.||||||.+++||--|+ ...+++|||||.++||...+..+.++|+++.++ .-+|+++|++ .++..+|+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~-~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ-SQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT-SEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc--ccccccccccccc
Confidence 79999999999997764 467899999999999999999999999998743 5677778874 6889999887763
No 423
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.44 E-value=2.9e-13 Score=153.43 Aligned_cols=129 Identities=14% Similarity=0.129 Sum_probs=89.6
Q ss_pred eeeEEeCC-cEEEEEcCCCCcHHHHHHHHHcC-CCCCCCcee-EEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHH
Q 010314 129 SNGYALPG-TMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYG-EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYY 205 (513)
Q Consensus 129 vs~~i~~G-e~~aliGpsGsGKSTLl~~L~G~-~~~~~~~~G-~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~ 205 (513)
+++.+.+| ++++|.||||+|||||||+|+|. +.+.. | .|... ....++|..|...
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~---G~~Vpa~------~~~~~~~~d~i~~------------- 371 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQS---GIPIPAN------EHSEIPYFEEIFA------------- 371 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHh---CCCccCC------ccccccchhheee-------------
Confidence 68888877 99999999999999999999997 22221 2 11110 0011222222100
Q ss_pred HHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 010314 206 SALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285 (513)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~ 285 (513)
.. +..+.... ....+|+|+++++.|++.+ .+|+++|+|||++|+|+.....
T Consensus 372 ----~i------------------~~~~si~~------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~a 422 (771)
T TIGR01069 372 ----DI------------------GDEQSIEQ------NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSA 422 (771)
T ss_pred ----ec------------------ChHhHHhh------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHH
Confidence 00 00000111 1237999999999998877 8999999999999999999999
Q ss_pred H-HHHHHHHHHcCCeEEEEEeCCh
Q 010314 286 M-MVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 286 i-~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
+ ..+|..+.+.|.++|++||+..
T Consensus 423 la~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 423 LAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHhcCCEEEEECChHH
Confidence 8 5778888878999999888863
No 424
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.37 E-value=1.1e-12 Score=112.98 Aligned_cols=72 Identities=11% Similarity=0.030 Sum_probs=58.4
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----CCceEEEEcCCcccCCCC
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----PYGSYGFVERETTLIGSL 197 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~~~~~~yv~Q~~~l~~~l 197 (513)
+.+|+++++.+++|++++|+||||||||||+++|. +|++.++|.+... ..+.++|++|+ +| ..
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~ 69 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EI 69 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hh
Confidence 46899999999999999999999999999999986 2899999986421 22446777777 44 45
Q ss_pred CHHHHHHHH
Q 010314 198 TVREYLYYS 206 (513)
Q Consensus 198 TV~E~l~~~ 206 (513)
|++|||.++
T Consensus 70 ti~~Ni~~~ 78 (107)
T cd00820 70 RLRLNIFLI 78 (107)
T ss_pred hHHhhceee
Confidence 999999773
No 425
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.36 E-value=1.2e-12 Score=126.73 Aligned_cols=44 Identities=23% Similarity=0.362 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPL-----YHLDSVSALLMMVTLKKLAS 295 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPT-----sgLD~~~~~~i~~~L~~l~~ 295 (513)
|++++.||++++.+|+++++|||| +|||+..+..+++.|+++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999874
No 426
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.34 E-value=2.3e-12 Score=142.32 Aligned_cols=77 Identities=21% Similarity=0.179 Sum_probs=69.3
Q ss_pred CCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE
Q 010314 246 KGLPCGERRRVRIARELVMR----PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~----P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (513)
..|||||+||++||++++.. |++|||||||+|||+.++..+.+.|+++++ +.+||++||++. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999974 899999999863 44689999999
Q ss_pred eCCe
Q 010314 322 SNGN 325 (513)
Q Consensus 322 ~~G~ 325 (513)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8764
No 427
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.33 E-value=3.8e-12 Score=124.21 Aligned_cols=132 Identities=17% Similarity=0.218 Sum_probs=85.3
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHH
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~-~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
+.+.+|+++.+.+|++++|+||||+||||++++|++. +.+.. |....... -.++|..| ++..+...|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~---G~~v~a~~------~~~~~~~~---i~~~~~~~d 85 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQI---GSFVPASS------ATLSIFDS---VLTRMGASD 85 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhC---CCEEEcCc------eEEeccce---EEEEecCcc
Confidence 3578999999999999999999999999999999994 34432 65443211 12333322 121111122
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP--CGERRRVRIARELVMRPHVLFIDEPLYHLD 279 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LS--GGqrqRv~IAraL~~~P~iLllDEPTsgLD 279 (513)
++.- ++| ..|-+|++-....+.+|+++|+|||.+|.|
T Consensus 86 ~~~~-----------------------------------------~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~ 124 (222)
T cd03287 86 SIQH-----------------------------------------GMSTFMVELSETSHILSNCTSRSLVILDELGRGTS 124 (222)
T ss_pred cccc-----------------------------------------ccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCC
Confidence 2100 111 122333333333456799999999999999
Q ss_pred HHHHHHH-HHHHHHHHHc-CCeEEEEEeCC
Q 010314 280 SVSALLM-MVTLKKLAST-GCTLLFTINQS 307 (513)
Q Consensus 280 ~~~~~~i-~~~L~~l~~~-g~tvi~t~h~~ 307 (513)
+.....+ ...++.+.+. +.++|++||+.
T Consensus 125 ~~d~~~i~~~il~~l~~~~~~~~i~~TH~~ 154 (222)
T cd03287 125 THDGIAIAYATLHYLLEEKKCLVLFVTHYP 154 (222)
T ss_pred hhhHHHHHHHHHHHHHhccCCeEEEEcccH
Confidence 7777664 5677777765 88999988886
No 428
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.31 E-value=1.8e-11 Score=120.30 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=92.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHH-HHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhc
Q 010314 132 YALPGTMTVIMGPAKSGKSTL-LRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTL-l~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (513)
-+++|++++|.|+|||||||| ++++++..+++. . +.|+.. ..+..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~---~---------------~~yi~~------e~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGY---S---------------VSYVST------QLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCC---c---------------EEEEeC------CCCHHHHHHHHHHhC
Confidence 377999999999999999999 689998765431 1 233321 224555554332222
Q ss_pred CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCC----CHHH
Q 010314 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM----RPHVLFIDEPLYHL----DSVS 282 (513)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~----~P~iLllDEPTsgL----D~~~ 282 (513)
.. +++.... +.-...+ .++ .+|+++.++..+.+.+-. +|+++++||||+++ |+..
T Consensus 76 ~~---------~~~~~~~-~~l~~~~------~~~-~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~ 138 (230)
T PRK08533 76 YD---------INKKLIS-GKLLYIP------VYP-LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVA 138 (230)
T ss_pred Cc---------hHHHhhc-CcEEEEE------ecc-cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHH
Confidence 11 0111110 1000000 011 467776666555544433 69999999999999 8888
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeCChH------HHHhcCCEEEEEe
Q 010314 283 ALLMMVTLKKLASTGCTLLFTINQSST------EVFGLFDRICLLS 322 (513)
Q Consensus 283 ~~~i~~~L~~l~~~g~tvi~t~h~~~~------~i~~~~D~v~vL~ 322 (513)
...+++.++.+++.|.|+++++|.... .+..+||-|+.|+
T Consensus 139 ~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 139 VNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 899999999998878888875443210 1244567777776
No 429
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.30 E-value=1.3e-11 Score=116.20 Aligned_cols=79 Identities=23% Similarity=0.084 Sum_probs=65.3
Q ss_pred CCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCeEEEEEeCChH-----
Q 010314 244 YMKGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLD---SVSALLMMVTLKKLASTGCTLLFTINQSST----- 309 (513)
Q Consensus 244 ~~~~LSGGqrq------Rv~IAraL~~~P~iLllDEPTsgLD---~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~----- 309 (513)
.+..+|+|++| ....+.+...+|+++++|||++.+| ......+.++++.+++.|.|+|+++|+...
T Consensus 68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCccc
Confidence 44589999998 5555555677999999999999999 888888999999998889999998886542
Q ss_pred ---HHHhcCCEEEEEe
Q 010314 310 ---EVFGLFDRICLLS 322 (513)
Q Consensus 310 ---~i~~~~D~v~vL~ 322 (513)
.+..+||.++.|+
T Consensus 148 ~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 148 GGGDVEYLVDGVIRLR 163 (187)
T ss_pred CcCceeEeeeEEEEEE
Confidence 2678899999986
No 430
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=7.6e-12 Score=147.42 Aligned_cols=81 Identities=19% Similarity=0.070 Sum_probs=73.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHH
Q 010314 243 CYMKGLPCGERRRVRIARELVM----------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 312 (513)
Q Consensus 243 ~~~~~LSGGqrqRv~IAraL~~----------~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~ 312 (513)
..+..|||||++||+||+||+. +|++||+||||+|||+.+...+++.|+.+...|++|+|++|++ ....
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~-~~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP-EFRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH-HHHH
Confidence 4567999999999999999986 7999999999999999999999999999987899999988876 5788
Q ss_pred hcCCEEEEEeCC
Q 010314 313 GLFDRICLLSNG 324 (513)
Q Consensus 313 ~~~D~v~vL~~G 324 (513)
.++|+|.|++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 999999999754
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=99.29 E-value=1e-11 Score=136.44 Aligned_cols=76 Identities=18% Similarity=0.228 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE
Q 010314 246 KGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~----~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (513)
+.|||||+|||+||++++. +|+++|||||++|||..++..+.+.|+++++ +.+|||+||++ .+..+||+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~--~~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLP--QVAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCH--HHHHhCCEEEEE
Confidence 3589999999999999997 5899999999999999999999999999974 68899999987 356899999999
Q ss_pred eCC
Q 010314 322 SNG 324 (513)
Q Consensus 322 ~~G 324 (513)
.++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 875
No 432
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.28 E-value=5.7e-12 Score=139.12 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=69.4
Q ss_pred CCCCCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHH
Q 010314 244 YMKGLPCGERRRVRIARELV----------MRPHVLFIDEPL-YHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF 312 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL~----------~~P~iLllDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~ 312 (513)
.+..||||||||++||++|+ .+|++||||||| ++||+.....+++.|+.+ .|.+||+++|++ ...
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~--~~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKD--HDP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECch--hch
Confidence 55789999999999999987 599999999998 789999999999999998 578999989985 355
Q ss_pred hcCCEEEEEeC-CeE
Q 010314 313 GLFDRICLLSN-GNT 326 (513)
Q Consensus 313 ~~~D~v~vL~~-G~i 326 (513)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 78999999986 554
No 433
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.27 E-value=6.4e-12 Score=142.85 Aligned_cols=81 Identities=16% Similarity=0.138 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCC
Q 010314 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (513)
..+|+||+|++.|++++ .+|+++|||||++|+|+.....+.. ++..+.+.|.++|++||+. ......+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~-el~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYK-ELKALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChH-HHHHHHhcCCCeE-EE
Confidence 37999999999999998 8999999999999999999988864 6777777789999988885 3444455555444 45
Q ss_pred eEEEE
Q 010314 325 NTLFF 329 (513)
Q Consensus 325 ~iv~~ 329 (513)
.+.+.
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
No 434
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.27 E-value=2.9e-11 Score=128.79 Aligned_cols=171 Identities=18% Similarity=0.170 Sum_probs=108.7
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC---C----------CCCceEEEEc
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS---E----------MPYGSYGFVE 188 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~---~----------~~~~~~~yv~ 188 (513)
+..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.|.+.|+.- . ...+.+.++.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~---gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~ 220 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADL---NVIALIGERGREVREFIERDLGPEGLKRSIVVVA 220 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCe---EEEEEEecCCccHHHHHHhhcChhhhcCeEEEEE
Confidence 34689999 9999999999999999999999999999988864 9999866432 1 0124577776
Q ss_pred CCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh--HHhhhhcCCCCCCCCCHHHHHHHHHH-HHHhhC
Q 010314 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD--YANKLIGGHCYMKGLPCGERRRVRIA-RELVMR 265 (513)
Q Consensus 189 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~--~~~~~vg~~~~~~~LSGGqrqRv~IA-raL~~~ 265 (513)
+.+.-. -.+....+.+ -.+.|.+...|-+- +.|. |+ |.+-| |++.
T Consensus 221 ~~~~~~---~~r~~~~~~a------------~~iAEyfr~~g~~Vll~~Ds----------lt-----r~A~A~rEis-- 268 (438)
T PRK07721 221 TSDQPA---LMRIKGAYTA------------TAIAEYFRDQGLNVMLMMDS----------VT-----RVAMAQREIG-- 268 (438)
T ss_pred CCCCCH---HHHHHHHHHH------------HHHHHHHHHCCCcEEEEEeC----------hH-----HHHHHHHHHH--
Confidence 543211 0111111110 01122222222110 0010 00 00000 1110
Q ss_pred CCEEEEeCC--CCCCCHHHHHHHHHHHHHHHH--cCC-----eEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 266 PHVLFIDEP--LYHLDSVSALLMMVTLKKLAS--TGC-----TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 266 P~iLllDEP--TsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
+.+.|| |+|+|+.....+.++++++.. .|. ||++.+|+.. ..+||++..|.+|+++..+...+
T Consensus 269 ---l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~---e~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 ---LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN---EPIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ---HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC---chhhhhEEEecCEEEEEeccHHH
Confidence 012343 789999999999999999974 575 8888888764 27899999999999999998754
No 435
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.23 E-value=6.7e-12 Score=124.45 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=61.2
Q ss_pred CCCCHHH--------HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHcCCeEEEEEeCChHHHHhcCC
Q 010314 246 KGLPCGE--------RRRVRIARELVMRPHVLFIDEPLYHLDSVSALL-MMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (513)
Q Consensus 246 ~~LSGGq--------rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~-i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (513)
..+|||+ +||+++||++..+++|.+| ||+.+|+.+... ++ +..+...+.|.|+.+|.. .....+|
T Consensus 128 ~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~l--a~~~~~p 201 (249)
T cd01128 128 KILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRL--AERRIFP 201 (249)
T ss_pred CCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHH--hhCCCCC
Confidence 4579999 9999999999999999999 999999655443 44 555554567888878875 3567899
Q ss_pred EEEEEeCCeE
Q 010314 317 RICLLSNGNT 326 (513)
Q Consensus 317 ~v~vL~~G~i 326 (513)
.|.+|+.|.+
T Consensus 202 aI~vl~s~sr 211 (249)
T cd01128 202 AIDILKSGTR 211 (249)
T ss_pred eEEEcCCCCc
Confidence 9999999987
No 436
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.23 E-value=4.9e-11 Score=116.12 Aligned_cols=139 Identities=17% Similarity=0.166 Sum_probs=87.8
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHH
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (513)
+.+-+|+++..++|++++|.||||+|||||++++++..--.. .| .........++++ +.++..+...|+
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~--~G------~~vpa~~~~i~~~---~~i~~~~~~~d~ 85 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQ--MG------MDVPAKSMRLSLV---DRIFTRIGARDD 85 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHH--cC------CccCccccEeccc---cEEEEecCcccc
Confidence 357899999999999999999999999999999988632100 01 1111001111111 223333333333
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010314 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC--GERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (513)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSG--GqrqRv~IAraL~~~P~iLllDEPTsgLD~ 280 (513)
+.. ++|. .|-++++-....+.+|+++|+|||.+|+|+
T Consensus 86 ~~~-----------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 86 IMK-----------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred ccc-----------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 311 0110 123333333333568999999999999999
Q ss_pred HHHHHHHHH-HHHHHHc-CCeEEEEEeCChHHHHhc
Q 010314 281 VSALLMMVT-LKKLAST-GCTLLFTINQSSTEVFGL 314 (513)
Q Consensus 281 ~~~~~i~~~-L~~l~~~-g~tvi~t~h~~~~~i~~~ 314 (513)
.....+... ++.|.+. +.++|+++|+. +.+..+
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~-el~~~~ 159 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYH-SLCDEF 159 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccH-HHHHHh
Confidence 999988888 7778765 88999988876 344443
No 437
>PRK13695 putative NTPase; Provisional
Probab=99.20 E-value=5.3e-12 Score=118.41 Aligned_cols=78 Identities=14% Similarity=0.142 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 246 KGLPCGERRRVRIARELVMRPHVLFIDEP--LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P~iLllDEP--TsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
..+||+++-++.+++..+.+|++|++||| +.++| ..+.+.|..+.+.|.++|+++|.. .+..++|++..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 46999999999999999999999999995 33444 445677777666789999999873 56678999999999
Q ss_pred CeEEEE
Q 010314 324 GNTLFF 329 (513)
Q Consensus 324 G~iv~~ 329 (513)
|+++..
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 998765
No 438
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.18 E-value=2.3e-10 Score=125.92 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=101.7
Q ss_pred CCCCHHHHHHHHHHhcCCCchhh-HHHHHHHH------HHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 010314 195 GSLTVREYLYYSALLQLPGFFCQ-RKNVVEDA------IHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRP 266 (513)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~-~~~~v~~~------l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P 266 (513)
..|++.+.+.|...+.+...... ....+.++ |-.+||..+ +++.. ..|||||.||+-||.-|=.+=
T Consensus 427 ~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a------~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 427 SEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSA------GTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred hhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccC------CCcChhHHHHHHHHHHhcccc
Confidence 45778888877665554332111 11122222 334566543 33333 489999999999999997653
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHHH
Q 010314 267 --HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (513)
Q Consensus 267 --~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (513)
=+++||||+.||-+.--.++++.|++|++.|-|+|++-|+. ++...||+|+-| +.|+||+.|++++++.
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 36799999999999999999999999999999999987764 678899999998 5689999999999875
No 439
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.16 E-value=3.7e-11 Score=115.85 Aligned_cols=62 Identities=26% Similarity=0.403 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCC
Q 010314 246 KGLPCGERRRVRIARELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P---~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (513)
..+|.|++|.+.|+..|...+ .++++|||-++|+|..+..+++.|+.+.+.+.-+|+|||.|
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp 299 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSP 299 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-G
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccc
Confidence 456999999999999998877 89999999999999999999999988876678899999976
No 440
>PRK03918 chromosome segregation protein; Provisional
Probab=99.16 E-value=8.6e-11 Score=136.44 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=68.4
Q ss_pred CCCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCC
Q 010314 243 CYMKGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (513)
Q Consensus 243 ~~~~~LSGGqrq------Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (513)
..+..|||||++ |++||++++.+|+++||||||+|||+..+..+.++|..+...+.+||+++|++ .+...||
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d 861 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAAD 861 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCC
Confidence 356789999999 55566688899999999999999999999999999999877678899988886 4678999
Q ss_pred EEEEEe
Q 010314 317 RICLLS 322 (513)
Q Consensus 317 ~v~vL~ 322 (513)
++++|.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 999997
No 441
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.15 E-value=1e-10 Score=119.84 Aligned_cols=141 Identities=14% Similarity=0.171 Sum_probs=94.1
Q ss_pred eeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCCC-ceEEEEcCCcc-cCCCCCHHHHHHH
Q 010314 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMPY-GSYGFVERETT-LIGSLTVREYLYY 205 (513)
Q Consensus 129 vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~~~-~~~~yv~Q~~~-l~~~lTV~E~l~~ 205 (513)
+++.++.|+.++|.||+|||||||+++|++.+++.. |.+.+..... .... ..+.++.+... -..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~---~iv~ied~~El~~~~~~~~~l~~~~~~~~~~---------- 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDE---RIITIEDTREIFLPHPNYVHLFYSKGGQGLA---------- 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccc---cEEEEcCccccCCCCCCEEEEEecCCCCCcC----------
Confidence 567788999999999999999999999999998764 7677653211 1000 11111111000 000
Q ss_pred HHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 010314 206 SALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALL 285 (513)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~ 285 (513)
.++- .-.++.+|-.+|++|++|||.+ .+
T Consensus 204 -----------------------------------------~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 204 -----------------------------------------KVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred -----------------------------------------ccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 1111 1134566778999999999996 34
Q ss_pred HHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 286 MMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 286 i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
++++++.+...+.+++.|+|..+ +....||+..|..|++...|.+.+.+
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 56777776633345688888764 56679999999999988888877665
No 442
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.12 E-value=2e-10 Score=135.19 Aligned_cols=80 Identities=24% Similarity=0.169 Sum_probs=70.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhc
Q 010314 243 CYMKGLPCGERRRVRIARELVM--------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314 (513)
Q Consensus 243 ~~~~~LSGGqrqRv~IAraL~~--------~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (513)
..+..|||||+++++||++|+. +|++||+||||++||+.+...+++.|..+.+.|++|++++|.. .....+
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhc
Confidence 4567999999999999999996 8999999999999999999999999999988899999988864 455667
Q ss_pred CCEEEEEeC
Q 010314 315 FDRICLLSN 323 (513)
Q Consensus 315 ~D~v~vL~~ 323 (513)
-.+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 777777764
No 443
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.12 E-value=2.2e-10 Score=121.27 Aligned_cols=169 Identities=16% Similarity=0.110 Sum_probs=116.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEE
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYG 185 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~ 185 (513)
+.-++++..+. .+.++++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.|.+.|+.
T Consensus 131 ~~r~~i~~~l~----TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~---gvI~~iGer--------- 193 (432)
T PRK06793 131 FEREEITDVFE----TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADI---NVISLVGER--------- 193 (432)
T ss_pred hheechhhccC----CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCe---EEEEeCCCC---------
Confidence 45555655443 234688885 9999999999999999999999999999988763 777665542
Q ss_pred EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh--
Q 010314 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV-- 263 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~-- 263 (513)
..+|.|.+.... ..-++... ..+ ....+-|.|+|+|++.+.+.+
T Consensus 194 ----------g~ev~e~~~~~l-------------------~~~gl~~t--vvv---~~tsd~s~~~r~ra~~~a~~iAE 239 (432)
T PRK06793 194 ----------GREVKDFIRKEL-------------------GEEGMRKS--VVV---VATSDESHLMQLRAAKLATSIAE 239 (432)
T ss_pred ----------cccHHHHHHHHh-------------------hhccccee--EEE---EECCCCCHHHHHHHHHHHHHHHH
Confidence 136666653211 11111110 001 123478999999999999988
Q ss_pred -----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 264 -----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 264 -----~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
.++-+|++|+||.+.|+. .+|-..+.+....|.+..+.+|++ .+ ++|.....+|.+...+..
T Consensus 240 yfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~--~L---~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 240 YFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMK--KL---LERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch--hH---HHHhccCCCcceEEEEEE
Confidence 789999999999999996 555556666654577777766642 33 445455678888776654
No 444
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.10 E-value=5.8e-10 Score=101.44 Aligned_cols=63 Identities=13% Similarity=0.041 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChH
Q 010314 247 GLPCGERRRVRIARELVMRPHVLFIDEPLY----------HLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~~P~iLllDEPTs----------gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (513)
..+.++.+++..+++...+|+++++||+++ ++|......+.+++..+.+.+.|+|+++|.+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 345666778888999999999999999995 455555666666666665669999999887753
No 445
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.09 E-value=1.6e-09 Score=124.37 Aligned_cols=69 Identities=20% Similarity=0.207 Sum_probs=60.1
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHH---------hcCCEEEEEeCCeEEEEeCh
Q 010314 263 VMRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVF---------GLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 263 ~~~P~iLllDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~---------~~~D~v~vL~~G~iv~~G~~ 332 (513)
..+|.++++|||+.+| |+..+..+.+.++.+++.|.++|+++|++. ++. +.||++++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 5799999999999999 799999999999999988999999888875 443 68999999999998766643
No 446
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.06 E-value=5.4e-10 Score=134.51 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=78.5
Q ss_pred CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC---CCCCCCCCHHHHH------HHHHHHHHhhCC
Q 010314 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG---HCYMKGLPCGERR------RVRIARELVMRP 266 (513)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~---~~~~~~LSGGqrq------Rv~IAraL~~~P 266 (513)
..|+.+||.+ + +.. ... ..+++..+...+....+.| ...+..||||||| |++||++|+.+|
T Consensus 1155 ~~~~~~~i~~----~-~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~Gq~~~~~~~~rlala~~~~~~~ 1224 (1311)
T TIGR00606 1155 RGQDIEYIEI----R-SDA---DEN--VSASDKRRNYNYRVVMLKGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNC 1224 (1311)
T ss_pred CccHHHHhhc----C-CCC---ChH--HHHHHHcCchHHHhccCCCCeecCCCCCCchhhhhHhhHhHHHHHHHHHhcCC
Confidence 3588888865 1 211 111 2334444444444433333 1244679999999 999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCeEEEEEeCChHHHHhcC
Q 010314 267 HVLFIDEPLYHLDSVSALLMMVTLKKLAS-----TGCTLLFTINQSSTEVFGLF 315 (513)
Q Consensus 267 ~iLllDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvi~t~h~~~~~i~~~~ 315 (513)
+||+|||||+|||+.+...+.+.|..+.. .|.+||+++|++ ..+..+|
T Consensus 1225 ~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~~~~~ 1277 (1311)
T TIGR00606 1225 GIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFVELLG 1277 (1311)
T ss_pred CEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHHHHHh
Confidence 99999999999999999999999988742 378999988876 5677665
No 447
>PRK01156 chromosome segregation protein; Provisional
Probab=99.03 E-value=7e-10 Score=129.19 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=65.8
Q ss_pred CCCCCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-Hc-C-CeEEEEEeCChHHHHhc
Q 010314 244 YMKGLPCGERRRVRI------ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-ST-G-CTLLFTINQSSTEVFGL 314 (513)
Q Consensus 244 ~~~~LSGGqrqRv~I------AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~-~~-g-~tvi~t~h~~~~~i~~~ 314 (513)
.+..|||||++|++| |++|+.+|++++|||||+|||+.....+.+.|+... .. | .++|++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467899999999975 589999999999999999999999999999998654 33 3 47888888863 4578
Q ss_pred CCEEEEEe
Q 010314 315 FDRICLLS 322 (513)
Q Consensus 315 ~D~v~vL~ 322 (513)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999997
No 448
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.97 E-value=9.6e-09 Score=95.90 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=59.6
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCC
Q 010314 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (513)
Q Consensus 245 ~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (513)
.+..|-||-=---+.+.+ .+--|.|||||-++|.|.-+..++..|++|++.|.-+|+.||-|.- +.----+|+-++.+
T Consensus 127 Lh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiL-lAiP~A~I~~~~~~ 204 (233)
T COG3910 127 LHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPIL-LAIPGAEIYEISES 204 (233)
T ss_pred hhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhh-eeCCCcEEEEEecC
Confidence 456788887555454444 5668999999999999999999999999999999899999998742 21123356656555
Q ss_pred e
Q 010314 325 N 325 (513)
Q Consensus 325 ~ 325 (513)
.
T Consensus 205 g 205 (233)
T COG3910 205 G 205 (233)
T ss_pred C
Confidence 4
No 449
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.96 E-value=1.8e-08 Score=99.08 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=94.9
Q ss_pred eeee-eeEEeCCcEEEEEcCCCCcHHHHHHHHH-cCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHH
Q 010314 126 VKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIA-GRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 126 L~~v-s~~i~~Ge~~aliGpsGsGKSTLl~~L~-G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
|+.+ .+=+++|.++.|.|++|+|||||...++ +....+ +. +.|+.-+ -+..+.+
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g----~~--------------~~y~~~e------~~~~~~~ 69 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQG----KK--------------VYVITTE------NTSKSYL 69 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCC----CE--------------EEEEEcC------CCHHHHH
Confidence 4443 4558899999999999999999998875 222221 22 3333332 1233322
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC---C
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM--RPHVLFIDEPLYH---L 278 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~--~P~iLllDEPTsg---L 278 (513)
.-...+.... .+.+. .+...+.+..+. .....+.++.+.+.++..++. +|+++++||||+. +
T Consensus 70 ~~~~~~g~~~---------~~~~~-~g~l~i~~~~~~---~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~ 136 (234)
T PRK06067 70 KQMESVKIDI---------SDFFL-WGYLRIFPLNTE---GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYA 136 (234)
T ss_pred HHHHHCCCCh---------hHHHh-CCCceEEecccc---ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcC
Confidence 2111111110 00000 011111111110 112356788999999999998 9999999999964 4
Q ss_pred CHHHHHHHHHHHHHHHHcCCeEEEEEeCChH------HHHhcCCEEEEEeC
Q 010314 279 DSVSALLMMVTLKKLASTGCTLLFTINQSST------EVFGLFDRICLLSN 323 (513)
Q Consensus 279 D~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~------~i~~~~D~v~vL~~ 323 (513)
|......+++.++.+++.|.|+++++|+... .+..++|-++.|+.
T Consensus 137 ~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 137 EEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 5555556666677777778999998876532 14567787777763
No 450
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.95 E-value=9e-10 Score=131.05 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=66.1
Q ss_pred CCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEE
Q 010314 244 YMKGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL~----~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (513)
.+..||||||+|++||++++ .+|+++||||||++||+.+...|.++|+.+++ +.++|+++|++. ...+||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~--~~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKG--TMEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChh--HHHHhhhHe
Confidence 55789999999999999985 57799999999999999999999999999875 478888899864 457899998
Q ss_pred EEe
Q 010314 320 LLS 322 (513)
Q Consensus 320 vL~ 322 (513)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 664
No 451
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.87 E-value=3.2e-09 Score=126.48 Aligned_cols=77 Identities=14% Similarity=0.159 Sum_probs=67.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEE
Q 010314 244 YMKGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL~~----~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (513)
.+..||||||++++||++|+. .|+++|||||+++||+.....+.++|+.+.. +..+|++||++ .+..+||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~--~~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRS--PMIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcH--HHHHhcceeE
Confidence 456899999999999999985 6799999999999999999999999999865 46778888986 3668999998
Q ss_pred EEeC
Q 010314 320 LLSN 323 (513)
Q Consensus 320 vL~~ 323 (513)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8753
No 452
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.85 E-value=1.3e-08 Score=97.67 Aligned_cols=57 Identities=25% Similarity=0.286 Sum_probs=42.5
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
+|+++|..+|+++++|||. |......++ +.+..|..++.|+|..+ +...+||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778999999999999996 655433333 34567899999999874 446789987774
No 453
>PRK02224 chromosome segregation protein; Provisional
Probab=98.84 E-value=6.5e-09 Score=120.91 Aligned_cols=78 Identities=24% Similarity=0.353 Sum_probs=66.4
Q ss_pred CCCCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCC-eEEEEEeCChHHH
Q 010314 245 MKGLPCGERR------RVRIARELVMR-----P-HVLFIDEPLYHLDSVSALLMMVTLKKLASTGC-TLLFTINQSSTEV 311 (513)
Q Consensus 245 ~~~LSGGqrq------Rv~IAraL~~~-----P-~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~-tvi~t~h~~~~~i 311 (513)
+..||||||+ |++||++++.+ | .++||||||++||+.....++++|+.+...|. +||+++|++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 5689999999 99999999864 3 67999999999999999999999999986664 7888888863 4
Q ss_pred HhcCCEEEEEeCC
Q 010314 312 FGLFDRICLLSNG 324 (513)
Q Consensus 312 ~~~~D~v~vL~~G 324 (513)
...||+++.|...
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 4679999999643
No 454
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.84 E-value=1.3e-08 Score=100.44 Aligned_cols=135 Identities=23% Similarity=0.389 Sum_probs=80.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC-EeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG-AKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G-~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 214 (513)
|.+..|+||+|+|||||+-.++=-... |.=++++ ... .....+.|+.=++..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~-----G~~~~g~~~~~-~~~~~Vlyi~~Ed~~--------------------- 53 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMAL-----GKNLFGGGLKV-TEPGRVVYLSAEDPR--------------------- 53 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhc-----CccccCCcccc-CCCceEEEEECCCCH---------------------
Confidence 678899999999999998887632211 2211111 111 111234444322110
Q ss_pred hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC--
Q 010314 215 FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR----------------ELVMRPHVLFIDEPLY-- 276 (513)
Q Consensus 215 ~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr----------------aL~~~P~iLllDEPTs-- 276 (513)
.+..+++..+...+++.+..++.+ +.+|+.|++.+++ ....+|+++++| |++
T Consensus 54 -~~i~~Rl~~i~~~~~~~~~~~rl~--------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~ 123 (239)
T cd01125 54 -EEIHRRLEAILQHLEPDDAGDRLF--------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSF 123 (239)
T ss_pred -HHHHHHHHHHHhhcCCcCcccceE--------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHh
Confidence 122334555555555444333321 1244555554443 345799999999 775
Q ss_pred ----CCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCC
Q 010314 277 ----HLDSVSALLMMVTLKKLAST-GCTLLFTINQS 307 (513)
Q Consensus 277 ----gLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~ 307 (513)
.+|+.....+++.|++++++ |.+||+++|..
T Consensus 124 ~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 124 HGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 47999999999999999864 88999865554
No 455
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.82 E-value=3e-09 Score=115.60 Aligned_cols=164 Identities=18% Similarity=0.200 Sum_probs=100.9
Q ss_pred eeee-eeEEeCCcEEEEEcCCCCcHHHHHHHH--HcCCCCCCCceeEEEECCEeCC----CCCceEEEEcCCcccCCCCC
Q 010314 126 VKSS-NGYALPGTMTVIMGPAKSGKSTLLRAI--AGRLPHSARMYGEVFVNGAKSE----MPYGSYGFVERETTLIGSLT 198 (513)
Q Consensus 126 L~~v-s~~i~~Ge~~aliGpsGsGKSTLl~~L--~G~~~~~~~~~G~I~i~G~~~~----~~~~~~~yv~Q~~~l~~~lT 198 (513)
|+.+ .+=+.+|.++.|.|++|||||||...+ .|....+. ..+++...... .....+||-.++..--
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge---~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~---- 82 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDE---PGVFVTFEESPQDIIKNARSFGWDLQKLVDE---- 82 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEecCHHHHHHHHHHcCCCHHHHhhc----
Confidence 4443 456779999999999999999998866 45543221 34444432110 0011223322211000
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCC
Q 010314 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA--RELVMRPHVLFIDEPLY 276 (513)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA--raL~~~P~iLllDEPTs 276 (513)
+++.+ +.. ........+++.+++.+..++... .+|+|++|||.|+ .+|...|+.+
T Consensus 83 --g~l~~---~~~-----~~~~~~~~~~~~~~l~~~l~~i~~------~ls~g~~qRVvIDSl~aL~~~~~~~------- 139 (484)
T TIGR02655 83 --GKLFI---LDA-----SPDPEGQDVVGGFDLSALIERINY------AIRKYKAKRVSIDSVTAVFQQYDAV------- 139 (484)
T ss_pred --CceEE---Eec-----CchhccccccccCCHHHHHHHHHH------HHHHhCCcEEEEeehhHhhhhcCch-------
Confidence 00000 000 000011224556777777777665 8999999999999 6666666544
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHH-------H-HhcCCEEEEEe
Q 010314 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE-------V-FGLFDRICLLS 322 (513)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~-------i-~~~~D~v~vL~ 322 (513)
...+..++++++.+++.|.|+|+++|+.... + ..+||.|+.|+
T Consensus 140 ---~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 ---SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ---HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 5677889999999988899999999875320 2 56899999986
No 456
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.81 E-value=3.9e-09 Score=112.00 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=44.9
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE 178 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~ 178 (513)
..+|++||+.+.+||+++|+|||||||||||+ +|+..|.. .|+|.++|.+..
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~s--Gg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSE--GYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCC--CCEEEECCEECC
Confidence 36899999999999999999999999999999 67777653 248999998753
No 457
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.73 E-value=3e-08 Score=106.58 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=91.7
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHH
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
.++++.+..+..|.+++++||||+||||++..|++.+.... |. ..++++.++. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~---G~------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRH---GA------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhc---CC------------CeEEEEeCCc---cchhHHHHH
Confidence 35666777788899999999999999999999999865431 32 2467777765 357899999
Q ss_pred HHHHHh-cCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCC
Q 010314 204 YYSALL-QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR-RVRIARELVMRP-----HVLFIDEPLY 276 (513)
Q Consensus 204 ~~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq-Rv~IAraL~~~P-----~iLllDEPTs 276 (513)
.+.+.+ ..+.. ......+..+...+|.+....++. ....+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilGVpv~--~~~~~~Dl~~aL~~L~d~d~VLID------TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILGVPVH--AVKDAADLRLALSELRNKHIVLID------TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhCCCee--ccCCchhHHHHHHhccCCCeEEeC------CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 775543 33321 111223344455666655444443 32222222 234444555554 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCeEEEEEeC
Q 010314 277 HLDSVSALLMMVTLKKLASTGCTLLFTINQ 306 (513)
Q Consensus 277 gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~ 306 (513)
+ ..+.+.++.....+.+-++.|+-
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTKl 401 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTKL 401 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeCC
Confidence 7 33445555555445554443543
No 458
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.73 E-value=2.6e-07 Score=106.78 Aligned_cols=55 Identities=25% Similarity=0.338 Sum_probs=48.4
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHh
Q 010314 258 IARELVMRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgL-D~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~ 313 (513)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.++++++|++. ++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~-d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLS-DAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHhh
Confidence 678888999999999999999 799999999999999988889999888874 4543
No 459
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.72 E-value=5.4e-07 Score=78.64 Aligned_cols=118 Identities=26% Similarity=0.339 Sum_probs=76.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 214 (513)
+|..+.|+||+|+||||+++.|+..+.... .+-+.++...... .......
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~----------------~~~~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILE----------------EVLDQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccc----------------cCHHHHH------------
Confidence 367899999999999999999999876531 1234444322100 0000000
Q ss_pred hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH------
Q 010314 215 FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMV------ 288 (513)
Q Consensus 215 ~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~------ 288 (513)
.... ........+++..+..++++--.+|.+|++||+..-.+.........
T Consensus 51 -----------------~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~ 107 (148)
T smart00382 51 -----------------LIIV------GGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107 (148)
T ss_pred -----------------hhhh------hccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHH
Confidence 0000 01123567788888888888888899999999999999988887665
Q ss_pred HHHHHHHcCCeEEEEEe
Q 010314 289 TLKKLASTGCTLLFTIN 305 (513)
Q Consensus 289 ~L~~l~~~g~tvi~t~h 305 (513)
........+..+|+++|
T Consensus 108 ~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 108 LLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHhcCCCEEEEEeC
Confidence 22223345678888777
No 460
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.64 E-value=5.6e-08 Score=92.30 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=56.7
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCC-CceEEEEcC--CcccCCCCCHHH
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMP-YGSYGFVER--ETTLIGSLTVRE 201 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~~-~~~~~yv~Q--~~~l~~~lTV~E 201 (513)
.+=+.+.+++|+.++|+||||||||||+++|+|+++++. |.|.+.+... ... ...++++.| +....+..++.+
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~---~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDE---RIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCC---CEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 344456678999999999999999999999999998864 8999977432 111 233455544 334566778888
Q ss_pred HHHHHH
Q 010314 202 YLYYSA 207 (513)
Q Consensus 202 ~l~~~~ 207 (513)
.+....
T Consensus 92 ~l~~~l 97 (186)
T cd01130 92 LLRSAL 97 (186)
T ss_pred HHHHHh
Confidence 776644
No 461
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.61 E-value=4.7e-08 Score=103.79 Aligned_cols=169 Identities=14% Similarity=0.067 Sum_probs=107.5
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----------CCCceEEEEcCC
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-----------MPYGSYGFVERE 190 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-----------~~~~~~~yv~Q~ 190 (513)
+..+++++ +.+.+|++++|+|+||+|||||+++|+|..+++...-|.|-.+|.... ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 45799999 999999999999999999999999999998776322355555443221 112368999999
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCch-----hhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 191 TTLIGSLTVREYLYYSALLQLPGFF-----CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 191 ~~l~~~lTV~E~l~~~~~~~~~~~~-----~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
...+..+++.+++.+.+.+...... -..-.+..++.+++++
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl---------------------------------- 266 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIAL---------------------------------- 266 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHH----------------------------------
Confidence 9999999999999766543211100 0001111112221111
Q ss_pred CCEEEEeCC--CCCCCHHHHHHHHHHHHHHH--H-cC-CeEEEEEeCChHHH-HhcCCEEEEEeCCeEEEE
Q 010314 266 PHVLFIDEP--LYHLDSVSALLMMVTLKKLA--S-TG-CTLLFTINQSSTEV-FGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 266 P~iLllDEP--TsgLD~~~~~~i~~~L~~l~--~-~g-~tvi~t~h~~~~~i-~~~~D~v~vL~~G~iv~~ 329 (513)
.+-|| +.|--+..-..+-+++.+.- + .| .|.+.++.-+.+++ .-++|.+.-+-+|+++..
T Consensus 267 ----~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 267 ----SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred ----hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 12243 23666777777777777752 2 23 46666665543333 235777777889999874
No 462
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.59 E-value=8.2e-08 Score=100.65 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCCh
Q 010314 246 KGLPCGERRRVRIARELVM---------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~---------~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
..+|.||+|++.||..|+. +|+|||||||+++||+..+..+++.|... |..|++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 3599999999999999999 99999999999999999999999999764 678899888763
No 463
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.57 E-value=3.1e-07 Score=98.22 Aligned_cols=171 Identities=15% Similarity=0.072 Sum_probs=100.4
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-------------CCCceEEEEc
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-------------MPYGSYGFVE 188 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-------------~~~~~~~yv~ 188 (513)
+.++++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.+...|.... ...+.+.++.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~---~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADV---NVIALIGERGREVREFIEHDLGEEGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCE---EEEEEEeecchHHHHHHHHHhcccccceEEEEEE
Confidence 35689999 9999999999999999999999999999988763 66665554211 0112233333
Q ss_pred CCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh--HHhhhhcCCCCCCCCCH-HHHHHHHHHHHHhhC
Q 010314 189 RETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD--YANKLIGGHCYMKGLPC-GERRRVRIARELVMR 265 (513)
Q Consensus 189 Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~--~~~~~vg~~~~~~~LSG-GqrqRv~IAraL~~~ 265 (513)
+.+. +..+-..-+ . .--.+.|.+...|-+- +.|. |+- -|.+| ++.
T Consensus 226 ~~d~-----~p~~r~~~~-~---------~a~t~AE~frd~G~~Vll~~Ds----------lTr~A~A~R-----Eis-- 273 (440)
T TIGR01026 226 TSDQ-----SPLLRLKGA-Y---------VATAIAEYFRDQGKDVLLLMDS----------VTRFAMAQR-----EIG-- 273 (440)
T ss_pred CCCC-----CHHHHHHHH-H---------HHHHHHHHHHHCCCCEEEEEeC----------hHHHHHHHH-----HHH--
Confidence 3221 111111000 0 0001122222222110 0010 000 01111 111
Q ss_pred CCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHcCC-------eEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 266 PHVLFIDEP--LYHLDSVSALLMMVTLKKLASTGC-------TLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 266 P~iLllDEP--TsgLD~~~~~~i~~~L~~l~~~g~-------tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
+.+.|| +.|+|+.....+.+++.+....+. ||++..|+. ...++|++.-+.+|+++.+....+
T Consensus 274 ---l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~---~dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 274 ---LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDM---NEPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred ---HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCC---CcchhhhhccccceEEEEecchhh
Confidence 233565 459999999999999999875555 566655554 245799999999999999887654
No 464
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.56 E-value=2.3e-07 Score=96.60 Aligned_cols=56 Identities=25% Similarity=0.277 Sum_probs=41.8
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (513)
+|+++|-.+|++|++||+. |+.++...++ .+..|..|+.|+|..+ +....+|++-|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~~--~~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTNS--AAQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCCC--HHHHHHHHHHh
Confidence 3567888999999999997 8888765444 3567999888888764 44566777655
No 465
>PRK14079 recF recombination protein F; Provisional
Probab=98.54 E-value=1.5e-07 Score=98.12 Aligned_cols=75 Identities=17% Similarity=0.076 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCC
Q 010314 246 KGLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~---------~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (513)
.-+|+||+|+++||..|+ .+|+|++||||+++||...+..+++.|.... . +++|+.+. ...+|
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q-~~it~t~~----~~~~~ 333 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---Q-AIVAGTEA----PPGAA 333 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---c-EEEEcCCC----CCCCc
Confidence 348999999999999999 8999999999999999999999998886532 2 44443332 45799
Q ss_pred EEEEEeCCeEEE
Q 010314 317 RICLLSNGNTLF 328 (513)
Q Consensus 317 ~v~vL~~G~iv~ 328 (513)
+++.+.+|++.-
T Consensus 334 ~~~~~~~~~~~~ 345 (349)
T PRK14079 334 LTLRIEAGVFTP 345 (349)
T ss_pred eEEEEeccEecC
Confidence 999999988743
No 466
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.50 E-value=8.4e-08 Score=91.73 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=62.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHH-HhcCCCchh
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFC 216 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~ 216 (513)
+++|.||||||||||+++|++++. . |.+.+-+ +++.+ ..++..+...... ....+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~-~----~~~~v~~--------------~D~~~-~~~~~~~~~~~~~~~~~~~~~-- 58 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG-N----PKVVIIS--------------QDSYY-KDLSHEELEERKNNNYDHPDA-- 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC-C----CCeEEEE--------------ecccc-cccccccHHHhccCCCCCCCc--
Confidence 589999999999999999999872 1 3333322 22211 1122222211110 0111111
Q ss_pred hHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010314 217 QRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (513)
Q Consensus 217 ~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~ 280 (513)
...+...+.+..+...+..+. .....|.|++++..+ .+.+|+++|+|+|+.+.++
T Consensus 59 ~~~~~~~~~l~~l~~~~~~~~------p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 59 FDFDLLISHLQDLKNGKSVEI------PVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ccHHHHHHHHHHHHCCCCEec------cccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 111233445554444322222 234778888776655 5788999999999999986
No 467
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.48 E-value=4.6e-08 Score=95.61 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=26.2
Q ss_pred eeee-eeEEeCCcEEEEEcCCCCcHHHHHHHHH
Q 010314 126 VKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIA 157 (513)
Q Consensus 126 L~~v-s~~i~~Ge~~aliGpsGsGKSTLl~~L~ 157 (513)
|+.+ .+=+++|++++|.|++|+|||||+..++
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 4443 4567899999999999999999988655
No 468
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.48 E-value=3e-07 Score=106.19 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHhh--CCCEEEEeCC---CCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCE
Q 010314 247 GLPCGERRRVRIARELVM--RPHVLFIDEP---LYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDR 317 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~--~P~iLllDEP---TsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~ 317 (513)
++|.=+.....++..|-. +++++|+||| |+.+|.. ...+..++.+.+. +.++|++||.. ++..++++
T Consensus 666 g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~--aia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 666 GRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL--SIAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred CcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH--HHHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 677777777777777655 8999999999 8889843 3455666777665 58889988883 67777765
No 469
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.45 E-value=5.5e-07 Score=105.14 Aligned_cols=79 Identities=27% Similarity=0.271 Sum_probs=69.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhc
Q 010314 243 CYMKGLPCGERRRVRIARELV------MR--PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314 (513)
Q Consensus 243 ~~~~~LSGGqrqRv~IAraL~------~~--P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (513)
..+..|||||+=.++||-+|+ .+ -++|||||||..||+.....+++.|..+...+.+|+++||++ ++.+.
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~ 888 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKER 888 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHh
Confidence 456789999999888777765 45 699999999999999999999999999988899999988885 67889
Q ss_pred CCEEEEEeC
Q 010314 315 FDRICLLSN 323 (513)
Q Consensus 315 ~D~v~vL~~ 323 (513)
+|.++.+..
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999998864
No 470
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.43 E-value=6.5e-07 Score=95.31 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=65.0
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCC-
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSE- 178 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~---~~~- 178 (513)
...+..++++..|.. +..+++.++ .+.+|+.++|+|+||||||||+++|+++.+++. |.|.+.|+ +..
T Consensus 137 p~~~~r~~v~~~l~T----Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~---gvv~liGergrev~e 208 (450)
T PRK06002 137 PPAMTRARVETGLRT----GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDT---VVIALVGERGREVRE 208 (450)
T ss_pred CCCeEeecceEEcCC----CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCe---eeeeecccCCccHHH
Confidence 356889999988853 357888886 899999999999999999999999999988864 88888653 211
Q ss_pred --------CCCceEEEEcCCcc
Q 010314 179 --------MPYGSYGFVERETT 192 (513)
Q Consensus 179 --------~~~~~~~yv~Q~~~ 192 (513)
...+.++|++|.+.
T Consensus 209 ~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 209 FLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HhHHHHHHhhCCeEEEEEcCCC
Confidence 11246899999764
No 471
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.42 E-value=1.2e-05 Score=92.75 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=42.6
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCeEEEEEeCCh
Q 010314 261 ELVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
.+..+|.++++|||...|| +..+..+.+.++.+++.|..+++++|.+.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 3456899999999999999 89999999999999888889999888764
No 472
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.36 E-value=5.6e-07 Score=108.55 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeC
Q 010314 245 MKGLPCGERRRVR----IARE--------LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ 306 (513)
Q Consensus 245 ~~~LSGGqrqRv~----IAra--------L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~ 306 (513)
..+||||||||++ +|++ +..+|++|+|||||+|||+.+...++++|.++ |.++|++++.
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence 4689999999996 5655 55899999999999999999999999999887 6788886654
No 473
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.35 E-value=1.2e-05 Score=93.05 Aligned_cols=47 Identities=28% Similarity=0.386 Sum_probs=41.5
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHcCCeEEEEEeCCh
Q 010314 262 LVMRPHVLFIDEPLYHLD-SVSALLMMVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD-~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.++++++|++.
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 345899999999999999 78899999999999888889999888764
No 474
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.28 E-value=9.4e-07 Score=83.93 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChH-HHHhcCCEEEEEeCC
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSST-EVFGLFDRICLLSNG 324 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~-~i~~~~D~v~vL~~G 324 (513)
|+-.|..||..+..+|+.+..+| +.|||.....+.+.+.++...|.+||+.+|...+ .+..+||.++++..+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 78899999999999999988887 8899999999999998886566788887776531 256789999887643
No 475
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.27 E-value=2.8e-06 Score=101.69 Aligned_cols=44 Identities=27% Similarity=0.335 Sum_probs=35.9
Q ss_pred eeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 010314 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (513)
Q Consensus 129 vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G 174 (513)
+++....+++++|+|++|+|||||++++.+.+... ..|.+++++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~--F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQ--FQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhc--CCeEEEeec
Confidence 45667789999999999999999999997765442 358888875
No 476
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.26 E-value=7e-07 Score=84.17 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (513)
+|++++|+|+||||||||+++|+|++.+ +.++|.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~ 36 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDD 36 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCcc
Confidence 6999999999999999999999998754 4666654
No 477
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.23 E-value=3.1e-05 Score=77.56 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=31.2
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
..|+.+.+-+.+|+++.|.|++|+|||||+..++..
T Consensus 18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~ 53 (271)
T cd01122 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD 53 (271)
T ss_pred ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467777777889999999999999999999887654
No 478
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.17 E-value=4.3e-06 Score=89.22 Aligned_cols=107 Identities=15% Similarity=0.087 Sum_probs=68.9
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCC--------CCCceEEEE---
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSE--------MPYGSYGFV--- 187 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~---~~~--------~~~~~~~yv--- 187 (513)
+.++++++ +.+.+|+.++|+|+||+|||||+++|+|..+... .|.|.+.|+ +.. ......+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~--~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvva 227 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEAD--VNVIALIGERGREVREFIEGDLGEEGMKRSVIVVS 227 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCC--ceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEe
Confidence 34689988 9999999999999999999999999999885421 367776552 210 011123444
Q ss_pred --cCCc--ccCCCCCHHHHHHHHHHhcCCC--chhhHHHHHHHHHHHcCCh
Q 010314 188 --ERET--TLIGSLTVREYLYYSALLQLPG--FFCQRKNVVEDAIHAMSLS 232 (513)
Q Consensus 188 --~Q~~--~l~~~lTV~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~~~L~ 232 (513)
+|++ .+.+.+ +...+....+.+... ...+...++.++++.++|.
T Consensus 228 ts~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 228 TSDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 7765 344444 444443332222111 1134567788999999994
No 479
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.16 E-value=4.6e-06 Score=93.22 Aligned_cols=112 Identities=19% Similarity=0.178 Sum_probs=70.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCC-----CceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhc
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSA-----RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~~~~-----~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (513)
.+.++|+||||+|||||+++|.+..++.. ...+-|.++|.......+ .+ .+-.+. .
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~---------------~i-~~~llg---~ 235 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPR---------------EV-TNPLLG---S 235 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHH---------------HH-hHHhcC---C
Confidence 45799999999999999999998865421 001335555532210000 00 011110 0
Q ss_pred CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 010314 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290 (513)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L 290 (513)
. . ........+.++.+|+.+..+..+ ..+||| +||||| +..||+..+..+++.|
T Consensus 236 ~-~--~~~~~~a~~~l~~~gl~~~~~g~v------~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~L 289 (615)
T TIGR02903 236 V-H--DPIYQGARRDLAETGVPEPKTGLV------TDAHGG----------------VLFIDE-IGELDPLLQNKLLKVL 289 (615)
T ss_pred c-c--HHHHHHHHHHHHHcCCCchhcCch------hhcCCC----------------eEEEec-cccCCHHHHHHHHHHH
Confidence 0 0 111223455677888876665544 478888 999999 8999999999999998
Q ss_pred HH
Q 010314 291 KK 292 (513)
Q Consensus 291 ~~ 292 (513)
++
T Consensus 290 e~ 291 (615)
T TIGR02903 290 ED 291 (615)
T ss_pred hh
Confidence 75
No 480
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.15 E-value=2.6e-06 Score=66.04 Aligned_cols=37 Identities=43% Similarity=0.464 Sum_probs=29.5
Q ss_pred eeeeeeEEeC-CcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 126 VKSSNGYALP-GTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 126 L~~vs~~i~~-Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
+++..+.+.+ |.+++|.|+||||||||+++|.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3445666665 679999999999999999999876544
No 481
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.13 E-value=6e-06 Score=69.17 Aligned_cols=47 Identities=28% Similarity=0.376 Sum_probs=36.5
Q ss_pred CCCCHHHH-HHHHHHHHH------hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010314 246 KGLPCGER-RRVRIAREL------VM------RPHVLFIDEPLYHLDSVSALLMMVTLKK 292 (513)
Q Consensus 246 ~~LSGGqr-qRv~IAraL------~~------~P~iLllDEPTsgLD~~~~~~i~~~L~~ 292 (513)
.++||||+ ..+.+|.++ -. .|++++||||+++||+.....++++|++
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 48999999 444444333 23 3799999999999999999999999874
No 482
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.09 E-value=1.1e-05 Score=84.35 Aligned_cols=72 Identities=22% Similarity=0.147 Sum_probs=42.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC----ceEEEEcCCcccCCCCCHHHHHHH
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY----GSYGFVERETTLIGSLTVREYLYY 205 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~----~~~~yv~Q~~~l~~~lTV~E~l~~ 205 (513)
++|.+++|.||+||||||+|++|++.+.+.....+.|.....+.+... ...+++.|...--...+..+.+.-
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~ 207 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRN 207 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHH
Confidence 489999999999999999999999987432101135554443332211 124567775421112344555543
No 483
>PRK13764 ATPase; Provisional
Probab=98.07 E-value=2e-05 Score=87.11 Aligned_cols=64 Identities=16% Similarity=0.257 Sum_probs=47.9
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeC--------------ChHHHHhcCCEEEEEeCCeE-
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ--------------SSTEVFGLFDRICLLSNGNT- 326 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~--------------~~~~i~~~~D~v~vL~~G~i- 326 (513)
|..+|+++++||.-..-| ++++..++..|..++.|+|- ....+...+|+|+.+++|++
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I~ 393 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVIFIEDGEVS 393 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEEEEeCCEEE
Confidence 678999999999985332 44555555557778888881 23467789999999999999
Q ss_pred -EEEeCh
Q 010314 327 -LFFGET 332 (513)
Q Consensus 327 -v~~G~~ 332 (513)
++.+..
T Consensus 394 ~v~~~~~ 400 (602)
T PRK13764 394 KVYDLEF 400 (602)
T ss_pred EEEeeee
Confidence 777663
No 484
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.07 E-value=4.7e-05 Score=71.92 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=36.0
Q ss_pred CCCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc
Q 010314 247 GLPCGERRRVR--IARELVM-RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST 296 (513)
Q Consensus 247 ~LSGGqrqRv~--IAraL~~-~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~ 296 (513)
.+++|+++++. +++.+-. +++++ |+|++|.....++++.|.++.++
T Consensus 147 l~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 147 KLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 68999999987 5555543 34433 99999999999999999987654
No 485
>PRK08149 ATP synthase SpaL; Validated
Probab=98.03 E-value=7.2e-06 Score=87.19 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=54.5
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---------CCCceEEEEcCCc
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---------MPYGSYGFVERET 191 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---------~~~~~~~yv~Q~~ 191 (513)
+..+++++ +.+.+|+.++|+|+||+|||||+++|++...++..+.|.|-.+|++.. ....++++|+...
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 45799999 999999999999999999999999999998776445588888887531 1124567776543
No 486
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.03 E-value=1.5e-05 Score=70.18 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----cCCeEEEEEeCC
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-----TGCTLLFTINQS 307 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-----~g~tvi~t~h~~ 307 (513)
+..........++.+|++||.-.. ++.....+.+.+..+.. .+..+|++++..
T Consensus 73 ~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 73 VRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred HhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 344445566778999999998765 56667778888887753 467788877754
No 487
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.01 E-value=5.2e-06 Score=75.29 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHh-----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010314 247 GLPCGERRRVRIARELV-----MRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~-----~~P~iLllDEPTsgLD~~~~~~i~~~L~~l 293 (513)
.++++++++........ ..|+++ |+|++|.....++++.|.++
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 122 KLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred cCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 57889888877666533 345555 99999999999999988764
No 488
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=98.00 E-value=7.6e-05 Score=72.73 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=44.1
Q ss_pred hCCCEEEEeCCCC------CCCHHHHHHHHHHHHHHHHcCCeEEEEEeCCh--------HHHHhcCCEEEEEe
Q 010314 264 MRPHVLFIDEPLY------HLDSVSALLMMVTLKKLASTGCTLLFTINQSS--------TEVFGLFDRICLLS 322 (513)
Q Consensus 264 ~~P~iLllDEPTs------gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~--------~~i~~~~D~v~vL~ 322 (513)
.+++++++| +.+ +.|...+..+.++++.+++.|.|+++++|... ..+..+||.|++|+
T Consensus 106 ~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 368899999 444 44555677888899999888999999888531 23577899999994
No 489
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.97 E-value=8.2e-05 Score=80.32 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=42.8
Q ss_pred hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHH-HcCCeEEEEEeCChH-------HHHhcCCEEEEEeCCe
Q 010314 264 MRPHVLFIDEPLYHL----D-----SVSALLMMVTLKKLA-STGCTLLFTINQSST-------EVFGLFDRICLLSNGN 325 (513)
Q Consensus 264 ~~P~iLllDEPTsgL----D-----~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~-------~i~~~~D~v~vL~~G~ 325 (513)
.+|+++++|.-++=. + ....++++..|.+++ +.|.|++++.|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 479999999876521 1 223455666677775 459999998775432 2567899999998654
No 490
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.97 E-value=1.1e-05 Score=84.77 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=48.0
Q ss_pred ceEEEEeEEEEEeccccccceeee-----------eeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVK-----------SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
..+.|+||++.|++ .+.+|+ |+.+.+.+|+.++|+||+|||||||++.|+..+..
T Consensus 129 ~ri~Fe~LTf~YP~----er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 129 NRVLFENLTPLYPN----ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCeEEEEeeecCCC----ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 36899999999974 235786 99999999999999999999999999999987643
No 491
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.94 E-value=1.3e-05 Score=82.48 Aligned_cols=50 Identities=22% Similarity=0.159 Sum_probs=43.3
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (513)
+.++++++ +.+.+|+.++|+|+||+|||||+++|+|...++. |.+..-|+
T Consensus 56 Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~---~vi~~iGe 105 (326)
T cd01136 56 GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADV---NVIALIGE 105 (326)
T ss_pred CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCE---EEEEEEec
Confidence 34689999 9999999999999999999999999999988763 76666553
No 492
>PRK01889 GTPase RsgA; Reviewed
Probab=97.93 E-value=7.2e-06 Score=85.82 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=52.6
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC--CCCCceEEEEcCCcccCCC
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS--EMPYGSYGFVERETTLIGS 196 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~--~~~~~~~~yv~Q~~~l~~~ 196 (513)
++.+.-.+.+|++++|+|+||+|||||+++|+|..++. +|+|.+++... ....+.+.+++|...++..
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~---~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt 254 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQK---TGAVREDDSKGRHTTTHRELHPLPSGGLLIDT 254 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccc---eeeEEECCCCCcchhhhccEEEecCCCeecCC
Confidence 44555567789999999999999999999999998876 49999986431 2223568888888776643
No 493
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.92 E-value=1.1e-05 Score=79.22 Aligned_cols=67 Identities=22% Similarity=0.245 Sum_probs=42.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeE----EEECCEeCCC-CCceEEEEcCCcccCCCCCHHHHHHH
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGE----VFVNGAKSEM-PYGSYGFVERETTLIGSLTVREYLYY 205 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~----I~i~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~E~l~~ 205 (513)
+..+++|.||||||||||+++|++++++.+ |. |.+++..... .....+++.+.. ....+++.+.+.+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~---g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~ 103 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDG---ELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAAL 103 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhcc---CCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHH
Confidence 567999999999999999999999998864 76 4444421110 012235555432 2344566555544
No 494
>PLN02796 D-glycerate 3-kinase
Probab=97.92 E-value=4.2e-06 Score=86.31 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=42.3
Q ss_pred eeeeeeeeEE---eCCcE-----EEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010314 124 KVVKSSNGYA---LPGTM-----TVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (513)
Q Consensus 124 ~iL~~vs~~i---~~Ge~-----~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (513)
.++++++..+ ++|+. +||.|+||||||||++.|.+++++.+...|.|.++|..
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4677777776 56776 99999999999999999999987643235888888754
No 495
>PRK09183 transposase/IS protein; Provisional
Probab=97.91 E-value=7.4e-05 Score=74.84 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=37.7
Q ss_pred EEEEeEEEEEeccc-cccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 106 VVWKDLTVTIKGKR-RYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 106 l~~~~ls~~~~~~~-~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-.++++.+++.... ......|.++++ ++.|+.+.|+||+|+|||+|+.+|+..
T Consensus 72 ~~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 72 KTFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CcHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 34555555553221 011135677788 999999999999999999999999765
No 496
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.90 E-value=1.2e-05 Score=85.62 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=51.5
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (513)
.++.++++..+. .+.++++++ +.+.+|+.++|+|+||+|||||+++|+|..+++. |.+.+.|.
T Consensus 129 ~~~r~~v~~~l~----tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~---~vi~~iGe 191 (433)
T PRK07594 129 AMVRQPITQPLM----TGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADS---NVLVLIGE 191 (433)
T ss_pred ceeccCHhheeC----CCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCE---EEEEEECC
Confidence 455566655553 346799999 9999999999999999999999999999988763 77777664
No 497
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.88 E-value=8.4e-06 Score=83.94 Aligned_cols=69 Identities=9% Similarity=0.065 Sum_probs=49.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----------CCceEEEEcCCcccCCCCCHHHH
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----------PYGSYGFVERETTLIGSLTVREY 202 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----------~~~~~~yv~Q~~~l~~~lTV~E~ 202 (513)
.+|++++|+||||+||||++..|++.+.+.+ |+|.+.+.+... ....+.+++|.....|..++.++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g---~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQG---KKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC---CeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 4789999999999999999999999987653 788887655311 12346777776555555556666
Q ss_pred HHH
Q 010314 203 LYY 205 (513)
Q Consensus 203 l~~ 205 (513)
+..
T Consensus 189 l~~ 191 (318)
T PRK10416 189 IQA 191 (318)
T ss_pred HHH
Confidence 543
No 498
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.87 E-value=0.00011 Score=78.14 Aligned_cols=67 Identities=21% Similarity=0.322 Sum_probs=44.2
Q ss_pred HHhhCCCEEEEeC----------CCCCCCHHHHHHHHHHHHHHHH----cCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 261 ELVMRPHVLFIDE----------PLYHLDSVSALLMMVTLKKLAS----TGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 261 aL~~~P~iLllDE----------PTsgLD~~~~~~i~~~L~~l~~----~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
|....|.|||+|| +.++.|...+..+.++|..+.. .+..||+++|++. .+ |.. ++..|++
T Consensus 234 A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d-~L----DpA-llR~GRf 307 (398)
T PTZ00454 234 ARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD-TL----DPA-LLRPGRL 307 (398)
T ss_pred HHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch-hC----CHH-HcCCCcc
Confidence 3446799999999 5567888888888888887742 2556888888763 22 222 3445553
Q ss_pred ---EEEeChH
Q 010314 327 ---LFFGETL 333 (513)
Q Consensus 327 ---v~~G~~~ 333 (513)
++.+.|+
T Consensus 308 d~~I~~~~P~ 317 (398)
T PTZ00454 308 DRKIEFPLPD 317 (398)
T ss_pred cEEEEeCCcC
Confidence 5565553
No 499
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.87 E-value=1.1e-05 Score=77.32 Aligned_cols=28 Identities=43% Similarity=0.703 Sum_probs=26.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
++|++++|+||||||||||+++|++..+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4899999999999999999999999875
No 500
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.87 E-value=1.1e-05 Score=76.56 Aligned_cols=35 Identities=34% Similarity=0.558 Sum_probs=29.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (513)
|++++|+||||||||||+++|++...+ .+.+++..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~------~~~~~~~~ 36 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT------QLLVAHRY 36 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC------eEEEcCEE
Confidence 789999999999999999999998643 46666554
Done!