Query 010314
Match_columns 513
No_of_seqs 573 out of 3530
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 04:06:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 1.9E-50 6.5E-55 417.5 29.0 222 104-337 23-253 (366)
2 3rlf_A Maltose/maltodextrin im 100.0 5E-50 1.7E-54 416.8 30.0 217 105-337 3-223 (381)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 1.9E-50 6.5E-55 417.2 26.6 217 105-337 4-228 (359)
4 1b0u_A Histidine permease; ABC 100.0 8.1E-50 2.8E-54 397.6 28.3 217 105-337 6-242 (262)
5 3tif_A Uncharacterized ABC tra 100.0 1E-49 3.4E-54 390.8 27.5 218 106-335 2-232 (235)
6 3gfo_A Cobalt import ATP-bindi 100.0 1.2E-49 4.1E-54 398.7 28.4 219 104-337 6-233 (275)
7 2olj_A Amino acid ABC transpor 100.0 1.3E-49 4.3E-54 396.2 28.3 217 105-337 24-248 (263)
8 2pcj_A ABC transporter, lipopr 100.0 3.4E-49 1.2E-53 384.3 27.4 210 105-331 4-222 (224)
9 1g6h_A High-affinity branched- 100.0 1.7E-49 5.9E-54 394.1 25.5 215 105-334 7-239 (257)
10 1vpl_A ABC transporter, ATP-bi 100.0 7.3E-49 2.5E-53 389.3 29.5 218 104-337 14-235 (256)
11 1ji0_A ABC transporter; ATP bi 100.0 6E-49 2E-53 386.5 26.5 216 104-336 5-227 (240)
12 1z47_A CYSA, putative ABC-tran 100.0 8.4E-49 2.9E-53 404.9 28.6 220 103-337 12-235 (355)
13 1g29_1 MALK, maltose transport 100.0 1.3E-48 4.5E-53 406.5 30.1 217 105-337 3-229 (372)
14 4g1u_C Hemin import ATP-bindin 100.0 1E-48 3.6E-53 390.3 27.4 215 104-336 10-236 (266)
15 2yyz_A Sugar ABC transporter, 100.0 8.6E-49 2.9E-53 405.6 27.7 217 105-337 3-223 (359)
16 2it1_A 362AA long hypothetical 100.0 1E-48 3.4E-53 405.5 28.2 217 105-337 3-223 (362)
17 1oxx_K GLCV, glucose, ABC tran 100.0 8.4E-49 2.9E-53 405.5 25.4 217 105-337 3-230 (353)
18 1v43_A Sugar-binding transport 100.0 1.7E-48 5.8E-53 405.2 25.7 217 105-337 11-231 (372)
19 3d31_A Sulfate/molybdate ABC t 100.0 3.3E-48 1.1E-52 399.9 26.5 211 106-336 2-216 (348)
20 2yz2_A Putative ABC transporte 100.0 1E-47 3.5E-52 383.3 25.8 221 105-337 2-227 (266)
21 2onk_A Molybdate/tungstate ABC 100.0 4.6E-48 1.6E-52 380.1 22.4 211 106-337 2-216 (240)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 3.5E-47 1.2E-51 376.1 24.3 214 105-333 3-229 (250)
23 2ihy_A ABC transporter, ATP-bi 100.0 2E-47 7E-52 383.5 22.4 217 104-335 20-250 (279)
24 2nq2_C Hypothetical ABC transp 100.0 1.8E-46 6.1E-51 371.6 26.7 208 105-335 4-215 (253)
25 3nh6_A ATP-binding cassette SU 100.0 4.2E-46 1.4E-50 378.0 25.9 216 104-337 52-277 (306)
26 2zu0_C Probable ATP-dependent 100.0 3.8E-46 1.3E-50 372.1 25.1 218 105-336 20-253 (267)
27 2ff7_A Alpha-hemolysin translo 100.0 6.9E-46 2.3E-50 366.2 25.5 216 104-336 6-231 (247)
28 2qi9_C Vitamin B12 import ATP- 100.0 5.9E-46 2E-50 367.0 23.0 205 105-335 4-220 (249)
29 2ixe_A Antigen peptide transpo 100.0 4.1E-46 1.4E-50 372.6 20.5 218 105-337 16-245 (271)
30 1mv5_A LMRA, multidrug resista 100.0 3.4E-46 1.1E-50 367.5 16.8 215 106-337 2-226 (243)
31 1sgw_A Putative ABC transporte 100.0 6.2E-46 2.1E-50 358.8 16.7 203 103-326 8-210 (214)
32 2pjz_A Hypothetical protein ST 100.0 6.7E-45 2.3E-49 362.1 24.5 209 106-337 2-215 (263)
33 2ghi_A Transport protein; mult 100.0 7E-45 2.4E-49 361.6 24.5 217 104-337 16-242 (260)
34 3gd7_A Fusion complex of cysti 100.0 5.6E-45 1.9E-49 380.9 18.2 215 104-337 18-242 (390)
35 2pze_A Cystic fibrosis transme 100.0 2.7E-44 9.3E-49 350.9 21.7 206 105-336 6-217 (229)
36 2cbz_A Multidrug resistance-as 100.0 6.7E-44 2.3E-48 349.9 20.0 207 105-337 3-217 (237)
37 3b5x_A Lipid A export ATP-bind 100.0 3E-42 1E-46 379.2 26.2 218 104-337 340-567 (582)
38 2yl4_A ATP-binding cassette SU 100.0 3.4E-42 1.1E-46 379.8 26.1 219 106-337 342-570 (595)
39 3b60_A Lipid A export ATP-bind 100.0 3E-42 1E-46 379.2 24.5 218 104-337 340-567 (582)
40 4a82_A Cystic fibrosis transme 100.0 4.3E-42 1.5E-46 377.7 24.7 217 104-337 338-564 (578)
41 3qf4_A ABC transporter, ATP-bi 100.0 3.5E-42 1.2E-46 378.9 23.3 217 104-337 340-566 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 3.5E-42 1.2E-46 379.8 20.2 216 104-337 353-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 1.2E-41 4E-46 343.3 18.9 203 104-337 39-247 (290)
44 4f4c_A Multidrug resistance pr 100.0 1.1E-40 3.8E-45 396.0 20.3 220 104-337 1075-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 2.2E-39 7.5E-44 384.8 25.0 218 104-337 414-641 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 9E-39 3.1E-43 378.7 23.3 218 104-337 386-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 1E-38 3.5E-43 378.3 19.9 220 104-337 1029-1258(1284)
48 1yqt_A RNAse L inhibitor; ATP- 100.0 3.1E-38 1.1E-42 343.7 20.6 206 103-337 285-493 (538)
49 3bk7_A ABC transporter ATP-bin 100.0 4.8E-38 1.6E-42 346.1 21.6 206 103-337 355-563 (607)
50 3ozx_A RNAse L inhibitor; ATP 100.0 1E-37 3.5E-42 339.3 20.4 206 103-335 267-475 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 2.2E-36 7.6E-41 332.5 17.1 203 109-338 350-560 (608)
52 2iw3_A Elongation factor 3A; a 100.0 7.7E-35 2.6E-39 331.9 25.9 200 103-337 433-635 (986)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 2.7E-36 9.3E-41 328.5 12.7 195 106-325 21-235 (538)
54 3bk7_A ABC transporter ATP-bin 100.0 3.5E-36 1.2E-40 331.3 13.0 192 109-325 95-305 (607)
55 3ux8_A Excinuclease ABC, A sub 100.0 7.1E-36 2.4E-40 333.6 15.5 207 123-337 31-298 (670)
56 2iw3_A Elongation factor 3A; a 100.0 6.5E-35 2.2E-39 332.5 15.9 206 104-331 670-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 7.4E-34 2.5E-38 317.3 18.3 194 124-336 336-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 4.5E-33 1.5E-37 306.3 11.9 186 124-328 92-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 6.5E-33 2.2E-37 301.5 11.6 172 134-327 23-216 (538)
60 2r6f_A Excinuclease ABC subuni 100.0 5.3E-31 1.8E-35 298.4 15.4 209 104-337 628-942 (972)
61 2vf7_A UVRA2, excinuclease ABC 100.0 7.3E-31 2.5E-35 296.5 16.4 213 103-336 500-826 (842)
62 3pih_A Uvrabc system protein A 100.0 4.6E-30 1.6E-34 292.2 22.4 199 124-337 598-902 (916)
63 2ygr_A Uvrabc system protein A 100.0 5.9E-30 2E-34 290.8 18.0 209 104-337 646-960 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.6E-32 5.4E-37 293.1 -9.6 185 127-335 129-336 (460)
65 4aby_A DNA repair protein RECN 100.0 9.6E-29 3.3E-33 260.0 15.6 202 124-330 49-381 (415)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.1E-25 3.6E-30 234.0 16.1 83 244-328 276-364 (365)
67 3b85_A Phosphate starvation-in 99.9 6.7E-29 2.3E-33 238.6 -11.6 141 122-308 12-159 (208)
68 1e69_A Chromosome segregation 99.9 3.2E-25 1.1E-29 226.4 12.6 88 244-334 216-310 (322)
69 4gp7_A Metallophosphoesterase; 99.9 1.2E-26 4.2E-31 215.5 1.7 146 128-312 1-163 (171)
70 1tq4_A IIGP1, interferon-induc 99.9 1.7E-27 5.9E-32 250.4 -13.1 177 122-324 35-254 (413)
71 1ye8_A Protein THEP1, hypothet 99.9 1.9E-25 6.5E-30 209.4 0.0 147 138-328 2-159 (178)
72 3b9q_A Chloroplast SRP recepto 99.9 6.8E-25 2.3E-29 222.2 0.4 172 126-326 90-284 (302)
73 1znw_A Guanylate kinase, GMP k 99.9 3.5E-27 1.2E-31 225.5 -15.7 177 123-322 9-202 (207)
74 2v9p_A Replication protein E1; 99.9 3.5E-27 1.2E-31 238.6 -20.2 169 105-341 101-270 (305)
75 2og2_A Putative signal recogni 99.9 1.4E-23 4.8E-28 217.0 1.9 171 127-326 148-341 (359)
76 3sop_A Neuronal-specific septi 99.9 5.5E-24 1.9E-28 212.2 -2.6 145 138-307 4-150 (270)
77 2o5v_A DNA replication and rep 99.8 4.7E-21 1.6E-25 198.2 14.4 84 244-335 261-354 (359)
78 2dpy_A FLII, flagellum-specifi 99.8 2.8E-24 9.5E-29 228.1 -11.9 190 104-335 130-342 (438)
79 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.3E-22 4.5E-27 207.9 0.7 129 125-325 160-291 (330)
80 1z6g_A Guanylate kinase; struc 99.8 1.5E-25 5.1E-30 216.4 -20.5 171 124-323 11-193 (218)
81 3qkt_A DNA double-strand break 99.8 4E-20 1.4E-24 190.0 17.7 77 244-322 245-327 (339)
82 3pih_A Uvrabc system protein A 99.8 3.5E-21 1.2E-25 219.4 8.6 162 151-337 383-560 (916)
83 3aez_A Pantothenate kinase; tr 99.8 8.7E-24 3E-28 215.0 -12.6 145 104-280 42-209 (312)
84 1tf7_A KAIC; homohexamer, hexa 99.8 8E-21 2.7E-25 206.3 9.8 156 130-325 275-444 (525)
85 1cr0_A DNA primase/helicase; R 99.8 1.7E-21 5.8E-26 195.8 4.0 183 123-326 22-237 (296)
86 4ad8_A DNA repair protein RECN 99.8 2.7E-20 9.2E-25 201.7 10.6 77 245-324 394-473 (517)
87 1tf7_A KAIC; homohexamer, hexa 99.8 8.6E-23 2.9E-27 221.8 -9.4 166 122-323 24-209 (525)
88 2o8b_B DNA mismatch repair pro 99.8 2.9E-21 1E-25 223.2 2.8 173 104-333 749-938 (1022)
89 2jeo_A Uridine-cytidine kinase 99.8 1E-21 3.4E-26 192.5 -2.4 177 121-337 10-187 (245)
90 3thx_A DNA mismatch repair pro 99.8 1.2E-19 4E-24 207.6 11.7 152 122-335 648-811 (934)
91 2r6f_A Excinuclease ABC subuni 99.8 2E-19 6.9E-24 204.0 13.0 133 195-336 450-599 (972)
92 2obl_A ESCN; ATPase, hydrolase 99.8 1.4E-21 4.6E-26 201.6 -4.5 185 105-335 45-253 (347)
93 2ehv_A Hypothetical protein PH 99.8 6.9E-21 2.4E-25 185.1 -0.7 167 125-322 18-206 (251)
94 2vf7_A UVRA2, excinuclease ABC 99.8 8.9E-20 3E-24 206.3 7.4 170 144-336 270-474 (842)
95 2ygr_A Uvrabc system protein A 99.8 3.2E-19 1.1E-23 203.0 11.3 135 194-337 466-617 (993)
96 4a74_A DNA repair and recombin 99.8 3.9E-20 1.3E-24 177.5 1.5 154 131-325 20-201 (231)
97 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 1E-18 3.6E-23 158.7 10.8 81 244-326 54-142 (148)
98 2eyu_A Twitching motility prot 99.8 1.1E-19 3.8E-24 180.2 1.7 133 124-323 15-147 (261)
99 3asz_A Uridine kinase; cytidin 99.7 2.7E-21 9.4E-26 184.2 -10.8 146 133-308 3-162 (211)
100 1rj9_A FTSY, signal recognitio 99.7 1.6E-19 5.4E-24 182.9 0.8 146 135-307 101-258 (304)
101 1ewq_A DNA mismatch repair pro 99.7 6.8E-19 2.3E-23 197.9 5.1 144 123-329 566-716 (765)
102 3thx_B DNA mismatch repair pro 99.7 3.4E-18 1.1E-22 195.2 9.8 145 122-318 659-805 (918)
103 2qnr_A Septin-2, protein NEDD5 99.7 1.2E-19 4.1E-24 183.6 -4.6 161 109-307 2-167 (301)
104 1wb9_A DNA mismatch repair pro 99.7 2.2E-18 7.4E-23 194.8 2.8 157 122-331 594-752 (800)
105 2w0m_A SSO2452; RECA, SSPF, un 99.7 3.2E-18 1.1E-22 163.9 3.1 169 123-324 9-192 (235)
106 1nlf_A Regulatory protein REPA 99.7 6.6E-17 2.3E-21 161.1 11.0 150 132-307 26-181 (279)
107 1pzn_A RAD51, DNA repair and r 99.7 1E-18 3.5E-23 180.3 -3.3 166 124-330 118-308 (349)
108 3szr_A Interferon-induced GTP- 99.7 4.5E-19 1.5E-23 195.6 -8.7 188 105-335 10-235 (608)
109 3jvv_A Twitching mobility prot 99.6 3.4E-17 1.2E-21 169.3 3.5 127 132-324 119-246 (356)
110 2qag_C Septin-7; cell cycle, c 99.6 7.8E-18 2.7E-22 177.4 -3.6 163 105-307 11-177 (418)
111 1pui_A ENGB, probable GTP-bind 99.6 4.7E-18 1.6E-22 160.7 -4.9 176 105-300 3-203 (210)
112 2i3b_A HCR-ntpase, human cance 99.6 4.8E-19 1.7E-23 167.3 -11.8 155 136-330 1-169 (189)
113 2cvh_A DNA repair and recombin 99.6 1.1E-15 3.8E-20 145.4 10.3 152 124-324 7-185 (220)
114 3kta_B Chromosome segregation 99.6 1.8E-15 6E-20 140.9 9.8 79 244-325 61-145 (173)
115 2bdt_A BH3686; alpha-beta prot 99.6 1.3E-19 4.4E-24 169.8 -20.3 173 136-335 2-182 (189)
116 1zp6_A Hypothetical protein AT 99.6 9.7E-18 3.3E-22 156.7 -9.0 148 133-302 6-156 (191)
117 1s96_A Guanylate kinase, GMP k 99.6 9.6E-17 3.3E-21 155.0 -2.8 146 132-339 12-162 (219)
118 1lw7_A Transcriptional regulat 99.5 5.6E-18 1.9E-22 175.6 -16.4 172 125-322 157-342 (365)
119 2bbw_A Adenylate kinase 4, AK4 99.5 1.4E-17 4.9E-22 162.8 -13.4 143 135-297 26-200 (246)
120 2gza_A Type IV secretion syste 99.5 4.7E-15 1.6E-19 153.6 2.4 136 125-325 164-303 (361)
121 2yhs_A FTSY, cell division pro 99.5 1.7E-15 5.7E-20 161.5 -1.1 153 126-307 283-449 (503)
122 2ewv_A Twitching motility prot 99.5 2.2E-15 7.4E-20 156.7 -0.6 130 125-322 127-257 (372)
123 1n0w_A DNA repair protein RAD5 99.5 3.1E-13 1.1E-17 130.3 14.6 152 131-324 19-209 (243)
124 2qag_B Septin-6, protein NEDD5 99.5 6.2E-16 2.1E-20 162.6 -5.0 184 105-306 16-218 (427)
125 3e70_C DPA, signal recognition 99.5 6.5E-15 2.2E-19 150.5 2.0 160 134-326 127-306 (328)
126 1nij_A Hypothetical protein YJ 99.5 3.5E-17 1.2E-21 166.7 -15.0 157 137-316 5-197 (318)
127 3ec2_A DNA replication protein 99.5 2.8E-15 9.6E-20 139.1 -2.2 114 130-310 32-146 (180)
128 2rcn_A Probable GTPase ENGC; Y 99.5 2.4E-14 8E-19 147.7 4.3 138 125-294 205-345 (358)
129 1htw_A HI0065; nucleotide-bind 99.4 5.2E-15 1.8E-19 135.7 -2.9 78 123-205 20-97 (158)
130 1udx_A The GTP-binding protein 99.4 3.9E-15 1.3E-19 156.7 -5.9 161 126-317 147-318 (416)
131 3auy_A DNA double-strand break 99.4 6.6E-13 2.3E-17 137.8 9.7 78 245-325 278-363 (371)
132 1w1w_A Structural maintenance 99.4 7.8E-13 2.7E-17 139.8 10.4 75 246-322 332-410 (430)
133 2yv5_A YJEQ protein; hydrolase 99.4 6.5E-14 2.2E-18 141.5 1.4 118 133-261 162-301 (302)
134 2f1r_A Molybdopterin-guanine d 99.4 2.8E-15 9.7E-20 139.2 -8.3 138 137-298 3-164 (171)
135 2kjq_A DNAA-related protein; s 99.4 4.5E-13 1.5E-17 121.4 6.2 94 125-308 30-126 (149)
136 2qm8_A GTPase/ATPase; G protei 99.4 3.1E-15 1.1E-19 153.6 -9.3 175 106-295 30-260 (337)
137 1odf_A YGR205W, hypothetical 3 99.3 3.2E-14 1.1E-18 143.0 -3.7 131 135-282 30-169 (290)
138 3lda_A DNA repair protein RAD5 99.3 6.9E-12 2.3E-16 131.4 13.0 158 125-325 166-364 (400)
139 1p9r_A General secretion pathw 99.3 2E-14 6.8E-19 151.5 -8.9 132 124-271 157-315 (418)
140 2oap_1 GSPE-2, type II secreti 99.3 1.8E-15 6E-20 163.4 -18.8 177 123-315 247-457 (511)
141 1sxj_E Activator 1 40 kDa subu 99.2 3E-12 1E-16 130.8 5.3 133 139-308 39-175 (354)
142 3c8u_A Fructokinase; YP_612366 99.2 8.9E-15 3E-19 139.3 -12.8 121 133-275 19-140 (208)
143 1u0l_A Probable GTPase ENGC; p 99.2 7.9E-13 2.7E-17 133.4 -0.3 105 132-250 165-294 (301)
144 2x8a_A Nuclear valosin-contain 99.2 1.1E-14 3.8E-19 145.1 -17.2 139 123-289 33-189 (274)
145 1t9h_A YLOQ, probable GTPase E 99.2 5E-12 1.7E-16 127.8 1.6 115 131-255 168-303 (307)
146 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 4.3E-14 1.5E-18 147.5 -16.3 169 132-333 16-209 (392)
147 1in4_A RUVB, holliday junction 99.1 2.3E-13 7.7E-18 139.2 -11.0 164 123-317 31-211 (334)
148 1lvg_A Guanylate kinase, GMP k 99.1 2.9E-14 1E-18 135.0 -18.8 57 258-323 116-173 (198)
149 2r6a_A DNAB helicase, replicat 99.1 3.1E-10 1.1E-14 120.7 10.1 173 123-326 190-401 (454)
150 1vma_A Cell division protein F 99.0 6.3E-11 2.1E-15 119.8 4.0 113 129-294 97-212 (306)
151 2dr3_A UPF0273 protein PH0284; 99.0 7.3E-10 2.5E-14 106.7 10.5 60 264-323 127-196 (247)
152 1ls1_A Signal recognition part 99.0 8E-10 2.7E-14 111.1 8.9 118 127-293 91-209 (295)
153 3k1j_A LON protease, ATP-depen 98.9 8.2E-12 2.8E-16 137.6 -8.4 159 122-292 46-227 (604)
154 2zr9_A Protein RECA, recombina 98.9 1.2E-09 4.3E-14 112.3 8.4 148 131-331 56-237 (349)
155 2ius_A DNA translocase FTSK; n 98.9 8.1E-11 2.8E-15 126.5 -1.4 177 128-320 159-361 (512)
156 3euj_A Chromosome partition pr 98.9 4.5E-10 1.5E-14 119.9 3.9 50 124-177 18-67 (483)
157 2px0_A Flagellar biosynthesis 98.9 1.7E-09 5.9E-14 108.7 7.8 142 134-329 103-247 (296)
158 1sq5_A Pantothenate kinase; P- 98.9 9.2E-11 3.2E-15 118.6 -2.7 94 105-209 37-155 (308)
159 3tr0_A Guanylate kinase, GMP k 98.8 2.7E-10 9.2E-15 107.0 -1.5 67 130-203 1-72 (205)
160 1iy2_A ATP-dependent metallopr 98.8 3.6E-12 1.2E-16 126.5 -17.0 123 123-268 62-190 (278)
161 1oix_A RAS-related protein RAB 98.7 1.1E-09 3.6E-14 102.2 -0.9 38 254-293 152-189 (191)
162 1ixz_A ATP-dependent metallopr 98.7 5.8E-12 2E-16 123.1 -17.1 126 124-274 39-170 (254)
163 3lnc_A Guanylate kinase, GMP k 98.6 1E-08 3.6E-13 98.5 2.3 40 123-162 14-54 (231)
164 3hr8_A Protein RECA; alpha and 98.6 1.6E-08 5.5E-13 104.1 3.3 33 131-163 56-88 (356)
165 1qhl_A Protein (cell division 98.6 2.3E-09 7.8E-14 103.8 -3.9 57 105-177 9-65 (227)
166 2ce7_A Cell division protein F 98.5 1.3E-07 4.4E-12 101.0 7.9 58 250-307 93-164 (476)
167 4a1f_A DNAB helicase, replicat 98.5 2.2E-07 7.6E-12 94.9 8.2 127 124-303 34-162 (338)
168 2f9l_A RAB11B, member RAS onco 98.5 5.8E-08 2E-12 90.6 3.0 37 256-294 130-166 (199)
169 4eun_A Thermoresistant glucoki 98.4 8.9E-09 3.1E-13 96.9 -3.9 40 131-177 24-63 (200)
170 3bh0_A DNAB-like replicative h 98.4 1.1E-06 3.7E-11 88.9 11.0 36 124-159 56-91 (315)
171 2xau_A PRE-mRNA-splicing facto 98.4 1.2E-07 4.1E-12 107.2 3.8 74 245-318 188-262 (773)
172 2qtf_A Protein HFLX, GTP-bindi 98.4 1.9E-08 6.5E-13 104.0 -2.9 150 135-295 177-353 (364)
173 3nwj_A ATSK2; P loop, shikimat 98.4 3.6E-08 1.2E-12 96.7 -0.9 52 105-160 17-72 (250)
174 2e87_A Hypothetical protein PH 98.3 3.9E-07 1.3E-11 93.6 5.4 58 245-304 229-287 (357)
175 3a00_A Guanylate kinase, GMP k 98.2 2.3E-07 8E-12 86.1 1.9 28 136-163 1-28 (186)
176 3uie_A Adenylyl-sulfate kinase 98.2 6.4E-08 2.2E-12 91.0 -2.7 50 124-177 13-64 (200)
177 1v5w_A DMC1, meiotic recombina 98.2 7.5E-06 2.6E-10 83.7 12.5 142 126-306 111-273 (343)
178 1zu4_A FTSY; GTPase, signal re 98.2 2.4E-07 8.1E-12 94.1 1.1 75 126-203 95-184 (320)
179 2z43_A DNA repair and recombin 98.2 1.1E-05 3.6E-10 81.8 13.1 142 125-306 95-257 (324)
180 3kta_A Chromosome segregation 98.2 6.9E-07 2.4E-11 82.1 3.8 38 125-163 14-53 (182)
181 2j41_A Guanylate kinase; GMP, 98.2 1E-06 3.6E-11 82.2 4.2 32 132-163 2-33 (207)
182 1jjv_A Dephospho-COA kinase; P 98.2 6.5E-07 2.2E-11 84.1 2.7 69 249-322 61-131 (206)
183 3vaa_A Shikimate kinase, SK; s 98.1 1.2E-06 3.9E-11 82.2 3.6 39 122-160 11-49 (199)
184 1kgd_A CASK, peripheral plasma 98.1 1.2E-06 4.1E-11 80.9 3.5 37 135-173 4-40 (180)
185 2dhr_A FTSH; AAA+ protein, hex 98.1 1E-08 3.5E-13 110.2 -12.9 125 124-276 54-187 (499)
186 2z4s_A Chromosomal replication 98.1 6.7E-07 2.3E-11 94.6 1.2 70 264-333 193-264 (440)
187 3b9p_A CG5977-PA, isoform A; A 98.0 2.3E-05 7.8E-10 77.6 11.2 73 249-321 97-186 (297)
188 3t34_A Dynamin-related protein 98.0 5.8E-06 2E-10 84.8 6.9 57 248-305 155-212 (360)
189 1fnn_A CDC6P, cell division co 98.0 3.2E-05 1.1E-09 79.0 12.4 43 264-307 124-169 (389)
190 2vp4_A Deoxynucleoside kinase; 98.0 9.9E-07 3.4E-11 84.8 0.7 39 131-176 15-53 (230)
191 3tau_A Guanylate kinase, GMP k 98.0 3.7E-06 1.3E-10 79.5 4.2 29 134-162 6-34 (208)
192 4e22_A Cytidylate kinase; P-lo 97.9 1.2E-06 4E-11 85.6 -1.1 54 134-190 25-95 (252)
193 1rz3_A Hypothetical protein rb 97.9 2.1E-06 7.2E-11 80.7 0.5 40 133-175 19-58 (201)
194 3cf0_A Transitional endoplasmi 97.8 2.7E-05 9.1E-10 77.9 7.8 28 133-160 46-73 (301)
195 1svm_A Large T antigen; AAA+ f 97.8 3.2E-06 1.1E-10 87.6 0.9 44 123-172 156-199 (377)
196 2qt1_A Nicotinamide riboside k 97.8 1.2E-05 4.2E-10 75.4 4.6 30 132-161 17-46 (207)
197 1knq_A Gluconate kinase; ALFA/ 97.8 5.2E-06 1.8E-10 75.6 1.9 35 134-175 6-40 (175)
198 2dy1_A Elongation factor G; tr 97.8 5.5E-06 1.9E-10 92.1 2.3 43 131-175 4-46 (665)
199 1ega_A Protein (GTP-binding pr 97.8 6.6E-06 2.3E-10 82.5 2.2 63 248-318 101-169 (301)
200 3tqc_A Pantothenate kinase; bi 97.8 3.1E-06 1.1E-10 85.9 -0.4 40 123-162 73-118 (321)
201 3cr8_A Sulfate adenylyltranfer 97.7 5.8E-06 2E-10 89.8 1.1 42 132-176 365-408 (552)
202 2q6t_A DNAB replication FORK h 97.7 0.00011 3.9E-09 77.4 11.0 170 124-323 188-397 (444)
203 3ney_A 55 kDa erythrocyte memb 97.7 1.3E-05 4.5E-10 75.6 3.2 28 134-161 17-44 (197)
204 1kag_A SKI, shikimate kinase I 97.7 1.2E-05 4E-10 72.9 2.8 27 135-161 3-29 (173)
205 3kl4_A SRP54, signal recogniti 97.7 3.6E-05 1.2E-09 81.0 6.8 36 135-173 96-131 (433)
206 1ypw_A Transitional endoplasmi 97.7 3.8E-05 1.3E-09 87.2 6.7 32 131-162 233-264 (806)
207 2w58_A DNAI, primosome compone 97.6 3E-05 1E-09 72.2 4.1 51 264-314 114-166 (202)
208 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 3.3E-05 1.1E-09 69.3 3.9 31 127-158 15-45 (149)
209 1w1w_A Structural maintenance 97.6 2.6E-05 9E-10 81.9 3.7 33 131-163 21-53 (430)
210 1l8q_A Chromosomal replication 97.6 9.8E-05 3.3E-09 74.2 7.2 47 263-309 96-143 (324)
211 3llm_A ATP-dependent RNA helic 97.5 1.3E-05 4.6E-10 76.9 -0.0 67 249-317 162-229 (235)
212 1u94_A RECA protein, recombina 97.5 0.0016 5.4E-08 66.8 15.2 35 125-159 50-86 (356)
213 3bgw_A DNAB-like replicative h 97.5 0.0003 1E-08 74.4 9.4 36 124-159 185-220 (444)
214 2p67_A LAO/AO transport system 97.4 1.3E-05 4.4E-10 81.8 -1.1 50 123-175 43-92 (341)
215 2qby_A CDC6 homolog 1, cell di 97.4 2.9E-05 9.9E-10 78.9 1.5 28 135-162 44-71 (386)
216 2pez_A Bifunctional 3'-phospho 97.4 3E-05 1E-09 71.0 1.3 37 135-175 4-42 (179)
217 4eaq_A DTMP kinase, thymidylat 97.4 5.4E-05 1.8E-09 72.8 3.0 37 126-162 13-52 (229)
218 3lxx_A GTPase IMAP family memb 97.4 0.0016 5.5E-08 62.2 12.7 25 138-162 31-55 (239)
219 3ice_A Transcription terminati 97.4 2.3E-05 7.7E-10 81.1 -0.5 52 105-160 133-198 (422)
220 2i1q_A DNA repair and recombin 97.3 0.00089 3E-08 67.2 10.9 34 125-158 86-120 (322)
221 3m6a_A ATP-dependent protease 97.3 3.8E-05 1.3E-09 83.3 0.0 47 124-174 97-143 (543)
222 2www_A Methylmalonic aciduria 97.3 5.8E-05 2E-09 77.3 1.2 39 135-176 73-111 (349)
223 1cke_A CK, MSSA, protein (cyti 97.2 0.00014 4.8E-09 68.8 3.5 25 136-160 5-29 (227)
224 3qks_A DNA double-strand break 97.2 0.00017 5.9E-09 67.9 3.9 31 128-159 16-46 (203)
225 3bos_A Putative DNA replicatio 97.2 0.00054 1.8E-08 64.6 7.0 44 264-307 103-148 (242)
226 2qor_A Guanylate kinase; phosp 97.2 0.00013 4.6E-09 68.2 2.7 28 134-161 10-37 (204)
227 2gj8_A MNME, tRNA modification 97.2 0.00046 1.6E-08 62.5 6.2 26 135-160 3-28 (172)
228 1m7g_A Adenylylsulfate kinase; 97.1 6.8E-05 2.3E-09 70.7 0.1 40 133-175 22-63 (211)
229 1y63_A LMAJ004144AAA protein; 97.1 0.00025 8.6E-09 65.2 3.4 32 128-159 2-33 (184)
230 1np6_A Molybdopterin-guanine d 97.1 0.00023 7.9E-09 65.6 2.9 39 137-175 7-45 (174)
231 1mky_A Probable GTP-binding pr 97.1 0.00061 2.1E-08 71.7 6.4 39 138-176 182-229 (439)
232 3d8b_A Fidgetin-like protein 1 97.0 0.0024 8.2E-08 65.2 10.6 27 134-160 115-141 (357)
233 1m2o_B GTP-binding protein SAR 97.0 0.00065 2.2E-08 62.4 5.7 35 124-159 12-46 (190)
234 3h4m_A Proteasome-activating n 97.0 0.00095 3.2E-08 65.3 7.0 27 134-160 49-75 (285)
235 2if2_A Dephospho-COA kinase; a 97.0 0.00029 9.9E-09 65.5 3.1 21 138-158 3-23 (204)
236 2yvu_A Probable adenylyl-sulfa 97.0 0.00021 7.1E-09 65.7 1.9 30 134-163 11-40 (186)
237 2ffh_A Protein (FFH); SRP54, s 97.0 0.00018 6E-09 75.7 1.5 45 127-176 91-135 (425)
238 1xp8_A RECA protein, recombina 96.9 0.011 3.7E-07 60.8 14.4 27 132-158 70-96 (366)
239 2p5t_B PEZT; postsegregational 96.9 0.00023 7.9E-09 69.1 1.4 40 132-176 28-67 (253)
240 1q57_A DNA primase/helicase; d 96.9 0.005 1.7E-07 65.8 11.9 35 124-158 230-264 (503)
241 3auy_A DNA double-strand break 96.9 0.00079 2.7E-08 69.2 5.4 31 126-157 16-46 (371)
242 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0038 1.3E-07 59.9 9.9 26 135-160 38-63 (262)
243 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00015 5.3E-09 74.1 -0.2 37 124-160 10-48 (359)
244 1j8m_F SRP54, signal recogniti 96.8 0.00016 5.4E-09 72.4 -0.4 46 127-176 89-135 (297)
245 2qgz_A Helicase loader, putati 96.8 0.00081 2.8E-08 67.5 4.7 53 263-315 212-266 (308)
246 1f6b_A SAR1; gtpases, N-termin 96.8 0.00031 1.1E-08 65.1 1.4 35 124-159 14-48 (198)
247 3t61_A Gluconokinase; PSI-biol 96.8 0.00053 1.8E-08 63.8 3.0 25 136-160 18-42 (202)
248 1xwi_A SKD1 protein; VPS4B, AA 96.8 0.009 3.1E-07 60.0 11.9 27 134-160 43-69 (322)
249 2b8t_A Thymidine kinase; deoxy 96.8 0.0014 4.6E-08 62.9 5.5 53 265-322 89-150 (223)
250 3cm0_A Adenylate kinase; ATP-b 96.7 0.00069 2.4E-08 61.8 3.2 25 135-159 3-27 (186)
251 2wji_A Ferrous iron transport 96.7 0.00082 2.8E-08 60.1 3.5 24 138-161 5-28 (165)
252 1qhx_A CPT, protein (chloramph 96.7 0.00096 3.3E-08 60.4 3.8 26 136-161 3-28 (178)
253 3kb2_A SPBC2 prophage-derived 96.7 0.00091 3.1E-08 59.9 3.4 23 138-160 3-25 (173)
254 1sxj_C Activator 1 40 kDa subu 96.7 0.00023 8E-09 72.0 -0.7 40 123-162 31-72 (340)
255 2ohf_A Protein OLA1, GTP-bindi 96.6 0.00093 3.2E-08 69.5 3.5 45 131-175 17-69 (396)
256 1q3t_A Cytidylate kinase; nucl 96.6 0.0011 3.7E-08 63.5 3.6 26 134-159 14-39 (236)
257 1lv7_A FTSH; alpha/beta domain 96.5 0.00083 2.8E-08 64.9 2.5 32 128-161 39-70 (257)
258 1kht_A Adenylate kinase; phosp 96.5 0.0014 4.9E-08 59.6 3.7 25 136-160 3-27 (192)
259 2v1u_A Cell division control p 96.5 0.0024 8.1E-08 64.7 5.6 26 135-160 43-68 (387)
260 2qag_A Septin-2, protein NEDD5 96.5 0.00023 8E-09 73.1 -2.0 47 105-162 17-63 (361)
261 2wjg_A FEOB, ferrous iron tran 96.5 0.0013 4.5E-08 59.6 3.2 22 138-159 9-30 (188)
262 2zej_A Dardarin, leucine-rich 96.5 0.0012 4.1E-08 60.1 3.0 23 138-160 4-26 (184)
263 3r20_A Cytidylate kinase; stru 96.4 0.0015 5.2E-08 63.0 3.5 25 136-160 9-33 (233)
264 1gvn_B Zeta; postsegregational 96.4 0.0016 5.5E-08 64.6 3.7 35 135-174 32-66 (287)
265 2rhm_A Putative kinase; P-loop 96.4 0.0015 5.2E-08 59.7 3.3 25 135-159 4-28 (193)
266 2ze6_A Isopentenyl transferase 96.4 0.0015 5.1E-08 63.5 3.3 23 138-160 3-25 (253)
267 3lw7_A Adenylate kinase relate 96.4 0.0017 5.9E-08 57.8 3.3 19 138-156 3-21 (179)
268 3cmw_A Protein RECA, recombina 96.3 0.0067 2.3E-07 73.4 9.0 29 132-160 728-756 (1706)
269 3trf_A Shikimate kinase, SK; a 96.3 0.0021 7.2E-08 58.5 3.6 26 135-160 4-29 (185)
270 2qp9_X Vacuolar protein sortin 96.3 0.011 3.8E-07 60.3 9.3 26 135-160 83-108 (355)
271 1ex7_A Guanylate kinase; subst 96.3 0.0019 6.4E-08 60.1 3.2 24 138-161 3-26 (186)
272 2r8r_A Sensor protein; KDPD, P 96.3 0.00097 3.3E-08 64.0 1.0 81 260-347 79-181 (228)
273 1vht_A Dephospho-COA kinase; s 96.3 0.0023 7.8E-08 60.1 3.6 24 135-158 3-26 (218)
274 2jaq_A Deoxyguanosine kinase; 96.3 0.0022 7.7E-08 58.9 3.5 23 138-160 2-24 (205)
275 2v54_A DTMP kinase, thymidylat 96.2 0.0026 9E-08 58.7 3.8 26 135-160 3-28 (204)
276 3iij_A Coilin-interacting nucl 96.2 0.0022 7.4E-08 58.3 3.2 25 135-159 10-34 (180)
277 2plr_A DTMP kinase, probable t 96.2 0.0027 9.1E-08 58.8 3.7 28 135-162 3-30 (213)
278 1ly1_A Polynucleotide kinase; 96.2 0.0026 8.8E-08 57.3 3.5 22 137-158 3-24 (181)
279 1via_A Shikimate kinase; struc 96.1 0.0027 9.1E-08 57.5 3.2 23 138-160 6-28 (175)
280 2c95_A Adenylate kinase 1; tra 96.1 0.0028 9.6E-08 58.0 3.4 25 135-159 8-32 (196)
281 2wwf_A Thymidilate kinase, put 96.1 0.0029 9.9E-08 58.8 3.6 26 135-160 9-34 (212)
282 1xjc_A MOBB protein homolog; s 96.1 0.002 6.9E-08 59.0 2.4 26 137-162 5-30 (169)
283 1uf9_A TT1252 protein; P-loop, 96.1 0.0032 1.1E-07 58.0 3.5 24 136-159 8-31 (203)
284 1gtv_A TMK, thymidylate kinase 96.1 0.0015 5E-08 60.9 1.1 25 138-162 2-26 (214)
285 3hu3_A Transitional endoplasmi 96.0 0.013 4.4E-07 62.6 8.5 28 133-160 235-262 (489)
286 1nn5_A Similar to deoxythymidy 96.0 0.0034 1.2E-07 58.3 3.6 27 134-160 7-33 (215)
287 1tev_A UMP-CMP kinase; ploop, 96.0 0.0037 1.2E-07 57.0 3.6 24 136-159 3-26 (196)
288 1nks_A Adenylate kinase; therm 96.0 0.0033 1.1E-07 57.2 3.2 24 138-161 3-26 (194)
289 3cmw_A Protein RECA, recombina 96.0 0.055 1.9E-06 65.5 14.4 36 124-159 369-406 (1706)
290 3vfd_A Spastin; ATPase, microt 95.9 0.044 1.5E-06 56.3 11.7 26 135-160 147-172 (389)
291 3k53_A Ferrous iron transport 95.9 0.0034 1.2E-07 61.3 3.0 23 138-160 5-27 (271)
292 1aky_A Adenylate kinase; ATP:A 95.8 0.0052 1.8E-07 57.8 3.8 26 135-160 3-28 (220)
293 2bwj_A Adenylate kinase 5; pho 95.8 0.0048 1.6E-07 56.6 3.4 27 134-160 10-36 (199)
294 3ake_A Cytidylate kinase; CMP 95.8 0.0045 1.5E-07 57.1 3.3 23 138-160 4-26 (208)
295 2z0h_A DTMP kinase, thymidylat 95.8 0.005 1.7E-07 56.3 3.4 23 138-160 2-24 (197)
296 4ag6_A VIRB4 ATPase, type IV s 95.7 0.0032 1.1E-07 64.9 2.2 44 265-308 262-308 (392)
297 2vli_A Antibiotic resistance p 95.7 0.0038 1.3E-07 56.5 2.4 26 135-160 4-29 (183)
298 2ged_A SR-beta, signal recogni 95.7 0.005 1.7E-07 56.0 3.1 23 138-160 50-72 (193)
299 1ko7_A HPR kinase/phosphatase; 95.7 0.0086 3E-07 60.2 5.0 35 124-159 133-167 (314)
300 1zd8_A GTP:AMP phosphotransfer 95.7 0.0057 1.9E-07 57.9 3.5 26 135-160 6-31 (227)
301 2cdn_A Adenylate kinase; phosp 95.6 0.007 2.4E-07 56.0 3.9 25 135-159 19-43 (201)
302 2nzj_A GTP-binding protein REM 95.6 0.006 2.1E-07 54.1 3.3 23 138-160 6-28 (175)
303 1z2a_A RAS-related protein RAB 95.6 0.0055 1.9E-07 53.9 3.0 23 138-160 7-29 (168)
304 3fb4_A Adenylate kinase; psych 95.6 0.0063 2.2E-07 56.8 3.4 22 138-159 2-23 (216)
305 2erx_A GTP-binding protein DI- 95.6 0.0064 2.2E-07 53.6 3.3 22 138-159 5-26 (172)
306 3b1v_A Ferrous iron uptake tra 95.6 0.0091 3.1E-07 58.7 4.6 23 138-160 5-27 (272)
307 3ihw_A Centg3; RAS, centaurin, 95.6 0.014 4.8E-07 53.1 5.6 21 139-159 23-43 (184)
308 2pbr_A DTMP kinase, thymidylat 95.6 0.0068 2.3E-07 55.2 3.4 23 138-160 2-24 (195)
309 1zuh_A Shikimate kinase; alpha 95.6 0.0073 2.5E-07 54.1 3.5 23 137-159 8-30 (168)
310 3q72_A GTP-binding protein RAD 95.6 0.0052 1.8E-07 54.1 2.5 22 139-160 5-26 (166)
311 1e6c_A Shikimate kinase; phosp 95.5 0.0059 2E-07 54.7 2.9 22 138-159 4-25 (173)
312 1kao_A RAP2A; GTP-binding prot 95.5 0.0064 2.2E-07 53.2 3.1 23 138-160 5-27 (167)
313 2ce2_X GTPase HRAS; signaling 95.5 0.0059 2E-07 53.3 2.8 22 139-160 6-27 (166)
314 2dyk_A GTP-binding protein; GT 95.5 0.0065 2.2E-07 53.1 3.1 23 138-160 3-25 (161)
315 1u8z_A RAS-related protein RAL 95.5 0.0064 2.2E-07 53.2 3.0 23 138-160 6-28 (168)
316 1ukz_A Uridylate kinase; trans 95.5 0.0076 2.6E-07 55.7 3.6 24 136-159 15-38 (203)
317 2iyv_A Shikimate kinase, SK; t 95.5 0.006 2E-07 55.5 2.8 23 137-159 3-25 (184)
318 3q85_A GTP-binding protein REM 95.5 0.0071 2.4E-07 53.4 3.3 22 139-160 5-26 (169)
319 1zak_A Adenylate kinase; ATP:A 95.5 0.0061 2.1E-07 57.4 2.9 26 135-160 4-29 (222)
320 1z0j_A RAB-22, RAS-related pro 95.5 0.007 2.4E-07 53.3 3.1 22 139-160 9-30 (170)
321 3dl0_A Adenylate kinase; phosp 95.5 0.0075 2.6E-07 56.4 3.4 23 138-160 2-24 (216)
322 1z08_A RAS-related protein RAB 95.5 0.0071 2.4E-07 53.4 3.1 23 138-160 8-30 (170)
323 3dm5_A SRP54, signal recogniti 95.5 0.098 3.4E-06 55.0 12.2 28 135-162 99-126 (443)
324 1qf9_A UMP/CMP kinase, protein 95.4 0.0077 2.6E-07 54.7 3.4 24 136-159 6-29 (194)
325 2pt5_A Shikimate kinase, SK; a 95.4 0.0082 2.8E-07 53.5 3.5 22 138-159 2-23 (168)
326 1ek0_A Protein (GTP-binding pr 95.4 0.0072 2.4E-07 53.1 3.0 22 139-160 6-27 (170)
327 3tw8_B RAS-related protein RAB 95.4 0.0065 2.2E-07 54.1 2.8 23 138-160 11-33 (181)
328 1c1y_A RAS-related protein RAP 95.4 0.0074 2.5E-07 53.0 3.0 22 139-160 6-27 (167)
329 1ky3_A GTP-binding protein YPT 95.4 0.0075 2.5E-07 53.8 3.1 23 138-160 10-32 (182)
330 1wms_A RAB-9, RAB9, RAS-relate 95.4 0.0075 2.6E-07 53.7 3.1 22 139-160 10-31 (177)
331 1g16_A RAS-related protein SEC 95.4 0.0069 2.4E-07 53.3 2.8 22 139-160 6-27 (170)
332 1fzq_A ADP-ribosylation factor 95.4 0.0063 2.2E-07 55.1 2.5 22 138-159 18-39 (181)
333 1svi_A GTP-binding protein YSX 95.4 0.0072 2.4E-07 54.9 2.8 23 138-160 25-47 (195)
334 1jal_A YCHF protein; nucleotid 95.4 0.013 4.5E-07 60.1 5.0 24 136-159 2-25 (363)
335 2lkc_A Translation initiation 95.3 0.011 3.6E-07 52.7 3.9 26 135-160 7-32 (178)
336 3cmu_A Protein RECA, recombina 95.3 0.1 3.5E-06 64.1 13.5 35 125-159 370-406 (2050)
337 2fn4_A P23, RAS-related protei 95.3 0.0075 2.6E-07 53.7 2.8 22 138-159 11-32 (181)
338 3a4m_A L-seryl-tRNA(SEC) kinas 95.3 0.0094 3.2E-07 57.9 3.7 26 135-160 3-28 (260)
339 3tlx_A Adenylate kinase 2; str 95.3 0.0097 3.3E-07 57.3 3.7 25 135-159 28-52 (243)
340 3pqc_A Probable GTP-binding pr 95.3 0.0075 2.6E-07 54.5 2.8 23 138-160 25-47 (195)
341 3lxw_A GTPase IMAP family memb 95.3 0.0084 2.9E-07 57.8 3.3 24 138-161 23-46 (247)
342 1uj2_A Uridine-cytidine kinase 95.3 0.009 3.1E-07 57.6 3.4 24 137-160 23-46 (252)
343 3clv_A RAB5 protein, putative; 95.3 0.0087 3E-07 54.2 3.1 23 138-160 9-31 (208)
344 1r2q_A RAS-related protein RAB 95.3 0.0089 3E-07 52.5 3.0 21 139-159 9-29 (170)
345 4dsu_A GTPase KRAS, isoform 2B 95.2 0.0091 3.1E-07 53.6 3.1 22 139-160 7-28 (189)
346 2cxx_A Probable GTP-binding pr 95.2 0.0083 2.8E-07 54.0 2.8 22 139-160 4-25 (190)
347 2hxs_A RAB-26, RAS-related pro 95.2 0.01 3.4E-07 52.9 3.3 23 138-160 8-30 (178)
348 3bc1_A RAS-related protein RAB 95.2 0.0092 3.1E-07 53.7 3.0 23 138-160 13-35 (195)
349 2grj_A Dephospho-COA kinase; T 95.2 0.01 3.5E-07 55.2 3.4 23 137-159 13-35 (192)
350 1upt_A ARL1, ADP-ribosylation 95.2 0.0094 3.2E-07 52.6 3.0 22 138-159 9-30 (171)
351 2oil_A CATX-8, RAS-related pro 95.2 0.0093 3.2E-07 54.2 3.0 22 139-160 28-49 (193)
352 1r8s_A ADP-ribosylation factor 95.2 0.0099 3.4E-07 52.1 3.0 21 139-159 3-23 (164)
353 4fcw_A Chaperone protein CLPB; 95.1 0.011 3.6E-07 58.3 3.5 28 136-163 47-74 (311)
354 2qmh_A HPR kinase/phosphorylas 95.1 0.017 5.7E-07 54.4 4.6 25 135-159 33-57 (205)
355 3t1o_A Gliding protein MGLA; G 95.1 0.011 3.7E-07 53.5 3.2 24 139-162 17-40 (198)
356 1jbk_A CLPB protein; beta barr 95.1 0.013 4.5E-07 52.3 3.8 26 135-160 42-67 (195)
357 2y8e_A RAB-protein 6, GH09086P 95.1 0.0097 3.3E-07 52.9 2.8 22 138-159 16-37 (179)
358 2g6b_A RAS-related protein RAB 95.1 0.011 3.6E-07 52.8 3.0 23 138-160 12-34 (180)
359 2a9k_A RAS-related protein RAL 95.1 0.011 3.6E-07 53.0 3.0 22 139-160 21-42 (187)
360 1z0f_A RAB14, member RAS oncog 95.1 0.011 3.7E-07 52.5 3.0 22 139-160 18-39 (179)
361 1moz_A ARL1, ADP-ribosylation 95.0 0.0067 2.3E-07 54.4 1.5 23 136-158 18-40 (183)
362 3con_A GTPase NRAS; structural 95.0 0.011 3.8E-07 53.5 3.0 22 139-160 24-45 (190)
363 1a7j_A Phosphoribulokinase; tr 95.0 0.0065 2.2E-07 60.3 1.5 26 135-160 4-29 (290)
364 2xb4_A Adenylate kinase; ATP-b 95.0 0.013 4.4E-07 55.5 3.5 22 138-159 2-23 (223)
365 2efe_B Small GTP-binding prote 95.0 0.012 4E-07 52.6 3.1 23 138-160 14-36 (181)
366 1wf3_A GTP-binding protein; GT 95.0 0.012 4.2E-07 58.6 3.5 23 138-160 9-31 (301)
367 3be4_A Adenylate kinase; malar 95.0 0.013 4.4E-07 55.1 3.4 26 135-160 4-29 (217)
368 2f6r_A COA synthase, bifunctio 95.0 0.012 4E-07 58.0 3.2 23 136-158 75-97 (281)
369 3a8t_A Adenylate isopentenyltr 95.0 0.02 7E-07 58.0 5.0 26 135-160 39-64 (339)
370 3iby_A Ferrous iron transport 95.0 0.011 3.8E-07 57.4 3.0 23 138-160 3-25 (256)
371 3t5d_A Septin-7; GTP-binding p 95.0 0.0099 3.4E-07 58.1 2.6 22 139-160 11-32 (274)
372 1nrj_B SR-beta, signal recogni 94.9 0.012 4E-07 54.7 3.0 23 138-160 14-36 (218)
373 2bme_A RAB4A, RAS-related prot 94.9 0.012 4E-07 53.0 2.8 23 138-160 12-34 (186)
374 2bov_A RAla, RAS-related prote 94.9 0.012 4.2E-07 53.7 3.0 23 138-160 16-38 (206)
375 3iev_A GTP-binding protein ERA 94.9 0.014 4.6E-07 58.4 3.5 23 138-160 12-34 (308)
376 2gf9_A RAS-related protein RAB 94.9 0.013 4.4E-07 53.2 3.0 22 139-160 25-46 (189)
377 1vg8_A RAS-related protein RAB 94.9 0.013 4.4E-07 53.7 3.1 23 138-160 10-32 (207)
378 3tkl_A RAS-related protein RAB 94.9 0.013 4.5E-07 53.1 3.0 22 139-160 19-40 (196)
379 2gf0_A GTP-binding protein DI- 94.8 0.013 4.3E-07 53.3 2.8 22 138-159 10-31 (199)
380 3kkq_A RAS-related protein M-R 94.8 0.014 4.7E-07 52.4 3.0 22 139-160 21-42 (183)
381 3cbq_A GTP-binding protein REM 94.8 0.01 3.6E-07 54.6 2.2 22 138-159 25-46 (195)
382 1m7b_A RND3/RHOE small GTP-bin 94.8 0.013 4.4E-07 53.0 2.8 23 138-160 9-31 (184)
383 1ksh_A ARF-like protein 2; sma 94.8 0.013 4.6E-07 52.7 2.9 25 136-160 18-42 (186)
384 2fg5_A RAB-22B, RAS-related pr 94.8 0.013 4.5E-07 53.4 2.8 22 139-160 26-47 (192)
385 1mh1_A RAC1; GTP-binding, GTPa 94.8 0.014 4.8E-07 52.2 3.0 22 138-159 7-28 (186)
386 2dby_A GTP-binding protein; GD 94.8 0.013 4.4E-07 60.3 3.0 21 139-159 4-24 (368)
387 1e4v_A Adenylate kinase; trans 94.8 0.015 5.1E-07 54.4 3.2 22 138-159 2-23 (214)
388 1zbd_A Rabphilin-3A; G protein 94.8 0.015 5.3E-07 53.2 3.2 22 139-160 11-32 (203)
389 2xtp_A GTPase IMAP family memb 94.8 0.014 4.7E-07 56.2 3.1 23 138-160 24-46 (260)
390 3umf_A Adenylate kinase; rossm 94.8 0.015 5E-07 55.4 3.1 25 135-159 28-52 (217)
391 1ak2_A Adenylate kinase isoenz 94.7 0.018 6.3E-07 54.6 3.8 26 135-160 15-40 (233)
392 1ltq_A Polynucleotide kinase; 94.7 0.016 5.4E-07 57.1 3.5 23 137-159 3-25 (301)
393 3a1s_A Iron(II) transport prot 94.7 0.015 5.3E-07 56.5 3.3 23 138-160 7-29 (258)
394 1z06_A RAS-related protein RAB 94.7 0.015 5.2E-07 52.6 3.1 21 139-159 23-43 (189)
395 2wsm_A Hydrogenase expression/ 94.7 0.015 5.1E-07 54.2 3.1 24 137-160 31-54 (221)
396 2cjw_A GTP-binding protein GEM 94.7 0.015 5.3E-07 53.3 3.0 22 138-159 8-29 (192)
397 4edh_A DTMP kinase, thymidylat 94.7 0.019 6.5E-07 54.3 3.7 28 135-162 5-32 (213)
398 3oes_A GTPase rhebl1; small GT 94.7 0.014 4.9E-07 53.6 2.8 23 138-160 26-48 (201)
399 3i8s_A Ferrous iron transport 94.7 0.015 5.2E-07 56.9 3.1 23 138-160 5-27 (274)
400 3dz8_A RAS-related protein RAB 94.6 0.015 5.1E-07 52.9 2.8 22 139-160 26-47 (191)
401 3bwd_D RAC-like GTP-binding pr 94.6 0.016 5.6E-07 51.7 3.0 23 138-160 10-32 (182)
402 2il1_A RAB12; G-protein, GDP, 94.6 0.015 5E-07 53.1 2.7 22 139-160 29-50 (192)
403 2a5j_A RAS-related protein RAB 94.6 0.016 5.6E-07 52.6 3.0 22 139-160 24-45 (191)
404 3t5g_A GTP-binding protein RHE 94.6 0.015 5.2E-07 52.0 2.8 22 138-159 8-29 (181)
405 2o52_A RAS-related protein RAB 94.6 0.016 5.6E-07 53.2 3.0 21 139-159 28-48 (200)
406 2p65_A Hypothetical protein PF 94.6 0.016 5.5E-07 51.8 2.9 27 135-161 42-68 (187)
407 1zj6_A ADP-ribosylation factor 94.6 0.017 5.7E-07 52.3 3.0 23 137-159 17-39 (187)
408 4dhe_A Probable GTP-binding pr 94.6 0.0085 2.9E-07 55.8 1.0 23 138-160 31-53 (223)
409 3v9p_A DTMP kinase, thymidylat 94.6 0.016 5.5E-07 55.5 3.0 28 134-161 23-50 (227)
410 1zd9_A ADP-ribosylation factor 94.6 0.017 5.8E-07 52.4 3.0 22 139-160 25-46 (188)
411 1x3s_A RAS-related protein RAB 94.6 0.017 5.8E-07 52.2 3.0 23 138-160 17-39 (195)
412 2atv_A RERG, RAS-like estrogen 94.6 0.017 6E-07 52.7 3.1 23 138-160 30-52 (196)
413 3cph_A RAS-related protein SEC 94.6 0.017 5.8E-07 53.1 3.0 23 138-160 22-44 (213)
414 3reg_A RHO-like small GTPase; 94.6 0.017 5.9E-07 52.5 3.0 23 138-160 25-47 (194)
415 4bas_A ADP-ribosylation factor 94.5 0.016 5.6E-07 52.6 2.8 23 138-160 19-41 (199)
416 2bcg_Y Protein YP2, GTP-bindin 94.5 0.016 5.4E-07 53.3 2.8 23 138-160 10-32 (206)
417 3zvl_A Bifunctional polynucleo 94.5 0.018 6.1E-07 60.1 3.5 26 134-159 256-281 (416)
418 2h57_A ADP-ribosylation factor 94.5 0.013 4.4E-07 53.2 2.1 23 138-160 23-45 (190)
419 3d3q_A TRNA delta(2)-isopenten 94.5 0.019 6.4E-07 58.4 3.4 24 137-160 8-31 (340)
420 2ew1_A RAS-related protein RAB 94.5 0.016 5.6E-07 53.7 2.8 22 139-160 29-50 (201)
421 2qu8_A Putative nucleolar GTP- 94.5 0.017 5.7E-07 54.4 2.9 22 138-159 31-52 (228)
422 2f7s_A C25KG, RAS-related prot 94.5 0.019 6.6E-07 53.2 3.3 22 139-160 28-49 (217)
423 2p5s_A RAS and EF-hand domain 94.5 0.018 6.1E-07 52.8 3.0 23 138-160 30-52 (199)
424 2h17_A ADP-ribosylation factor 94.5 0.016 5.3E-07 52.3 2.6 22 138-159 23-44 (181)
425 1jwy_B Dynamin A GTPase domain 94.5 0.017 5.8E-07 57.2 3.0 23 138-160 26-48 (315)
426 2j9r_A Thymidine kinase; TK1, 94.5 0.098 3.3E-06 49.6 8.1 53 265-322 101-162 (214)
427 3lv8_A DTMP kinase, thymidylat 94.5 0.021 7.3E-07 55.0 3.5 28 135-162 26-53 (236)
428 2iwr_A Centaurin gamma 1; ANK 94.4 0.015 5.2E-07 51.8 2.2 22 138-159 9-30 (178)
429 2q3h_A RAS homolog gene family 94.4 0.021 7.3E-07 52.1 3.3 23 138-160 22-44 (201)
430 2fv8_A H6, RHO-related GTP-bin 94.4 0.019 6.3E-07 53.1 2.8 23 138-160 27-49 (207)
431 3llu_A RAS-related GTP-binding 94.4 0.022 7.5E-07 52.1 3.3 24 138-161 22-45 (196)
432 3c5c_A RAS-like protein 12; GD 94.3 0.021 7.1E-07 51.9 3.1 22 139-160 24-45 (187)
433 1njg_A DNA polymerase III subu 94.3 0.026 8.7E-07 52.3 3.7 23 138-160 47-69 (250)
434 2zts_A Putative uncharacterize 94.3 0.029 9.8E-07 53.0 4.1 60 263-322 133-206 (251)
435 2h92_A Cytidylate kinase; ross 94.3 0.021 7.2E-07 53.3 3.1 25 136-160 3-27 (219)
436 3exa_A TRNA delta(2)-isopenten 94.3 0.025 8.5E-07 56.9 3.7 25 136-160 3-27 (322)
437 2j1l_A RHO-related GTP-binding 94.3 0.021 7.3E-07 53.1 3.1 22 138-159 36-57 (214)
438 1gwn_A RHO-related GTP-binding 94.3 0.02 6.7E-07 53.2 2.8 22 139-160 31-52 (205)
439 1sky_E F1-ATPase, F1-ATP synth 94.3 0.025 8.6E-07 59.8 3.9 36 124-160 140-175 (473)
440 3crm_A TRNA delta(2)-isopenten 94.3 0.023 8E-07 57.3 3.5 24 137-160 6-29 (323)
441 2fh5_B SR-beta, signal recogni 94.3 0.022 7.4E-07 52.7 3.0 23 138-160 9-31 (214)
442 3tqf_A HPR(Ser) kinase; transf 94.3 0.044 1.5E-06 50.3 5.0 26 134-159 14-39 (181)
443 4tmk_A Protein (thymidylate ki 94.2 0.026 9E-07 53.4 3.6 28 135-162 2-29 (213)
444 3sr0_A Adenylate kinase; phosp 94.2 0.025 8.6E-07 53.2 3.4 22 138-159 2-23 (206)
445 2aka_B Dynamin-1; fusion prote 94.2 0.02 6.7E-07 56.1 2.8 23 138-160 28-50 (299)
446 2ocp_A DGK, deoxyguanosine kin 94.2 0.026 8.9E-07 53.8 3.5 26 136-161 2-27 (241)
447 2fu5_C RAS-related protein RAB 94.2 0.015 5.1E-07 52.2 1.6 22 138-159 10-31 (183)
448 2gco_A H9, RHO-related GTP-bin 94.2 0.022 7.5E-07 52.4 2.8 22 139-160 28-49 (201)
449 3cmu_A Protein RECA, recombina 94.2 0.14 4.8E-06 62.9 10.5 37 122-158 1065-1103(2050)
450 3tmk_A Thymidylate kinase; pho 94.1 0.028 9.6E-07 53.4 3.5 28 135-162 4-31 (216)
451 2b6h_A ADP-ribosylation factor 94.1 0.021 7.1E-07 52.2 2.5 23 137-159 30-52 (192)
452 3def_A T7I23.11 protein; chlor 94.0 0.025 8.5E-07 54.8 3.1 23 138-160 38-60 (262)
453 2atx_A Small GTP binding prote 94.0 0.024 8.3E-07 51.4 2.8 21 139-159 21-41 (194)
454 3ld9_A DTMP kinase, thymidylat 94.0 0.032 1.1E-06 53.3 3.7 27 135-161 20-46 (223)
455 2orv_A Thymidine kinase; TP4A 94.0 0.2 6.7E-06 48.1 9.2 53 264-322 89-150 (234)
456 1sxj_D Activator 1 41 kDa subu 94.0 0.0099 3.4E-07 59.5 0.1 42 265-308 133-174 (353)
457 1h65_A Chloroplast outer envel 94.0 0.025 8.6E-07 55.0 3.0 23 138-160 41-63 (270)
458 2r62_A Cell division protease 93.9 0.0086 3E-07 57.9 -0.4 22 139-160 47-68 (268)
459 1ypw_A Transitional endoplasmi 93.9 0.011 3.6E-07 67.1 0.2 33 129-161 504-536 (806)
460 2g3y_A GTP-binding protein GEM 93.9 0.03 1E-06 52.7 3.3 22 138-159 39-60 (211)
461 2hf9_A Probable hydrogenase ni 93.8 0.029 1E-06 52.4 3.0 24 137-160 39-62 (226)
462 1p5z_B DCK, deoxycytidine kina 93.8 0.021 7.1E-07 55.3 2.0 26 135-160 23-48 (263)
463 4djt_A GTP-binding nuclear pro 93.8 0.014 4.7E-07 54.2 0.6 21 139-159 14-34 (218)
464 3cpj_B GTP-binding protein YPT 93.7 0.032 1.1E-06 52.2 3.1 23 138-160 15-37 (223)
465 2hup_A RAS-related protein RAB 93.7 0.03 1E-06 51.6 2.8 22 139-160 32-53 (201)
466 3foz_A TRNA delta(2)-isopenten 93.6 0.041 1.4E-06 55.2 3.8 25 136-160 10-34 (316)
467 3cnl_A YLQF, putative uncharac 93.6 0.036 1.2E-06 54.1 3.3 25 137-161 100-124 (262)
468 2yc2_C IFT27, small RAB-relate 93.6 0.015 5E-07 53.2 0.4 22 138-159 22-43 (208)
469 2x77_A ADP-ribosylation factor 93.6 0.021 7.3E-07 51.6 1.5 23 137-159 23-45 (189)
470 3n70_A Transport activator; si 93.6 0.038 1.3E-06 48.4 3.1 43 266-310 77-119 (145)
471 4dcu_A GTP-binding protein ENG 93.5 0.029 1E-06 59.0 2.8 22 138-159 25-46 (456)
472 4gzl_A RAS-related C3 botulinu 93.5 0.033 1.1E-06 51.4 2.8 22 138-159 32-53 (204)
473 3q3j_B RHO-related GTP-binding 93.5 0.037 1.3E-06 51.6 3.0 22 138-159 29-50 (214)
474 2j0v_A RAC-like GTP-binding pr 93.4 0.036 1.2E-06 51.1 2.8 23 138-160 11-33 (212)
475 3syl_A Protein CBBX; photosynt 93.4 0.044 1.5E-06 53.8 3.6 27 135-161 66-92 (309)
476 3eph_A TRNA isopentenyltransfe 93.3 0.042 1.5E-06 57.0 3.5 24 137-160 3-26 (409)
477 2vhj_A Ntpase P4, P4; non- hyd 93.3 0.051 1.7E-06 54.8 3.9 29 131-159 118-146 (331)
478 3euj_A Chromosome partition pr 93.3 0.12 4.1E-06 55.0 6.9 71 245-322 377-464 (483)
479 2chg_A Replication factor C sm 93.2 0.045 1.5E-06 50.0 3.2 22 139-160 41-62 (226)
480 2orw_A Thymidine kinase; TMTK, 93.1 0.056 1.9E-06 49.7 3.5 53 265-322 76-137 (184)
481 3gmt_A Adenylate kinase; ssgci 93.0 0.052 1.8E-06 52.1 3.2 22 138-159 10-31 (230)
482 3t15_A Ribulose bisphosphate c 93.0 0.053 1.8E-06 53.6 3.4 25 136-160 36-60 (293)
483 1d2n_A N-ethylmaleimide-sensit 92.8 0.054 1.9E-06 52.4 3.2 25 135-159 63-87 (272)
484 3eie_A Vacuolar protein sortin 92.7 0.065 2.2E-06 53.5 3.7 26 135-160 50-75 (322)
485 3uk6_A RUVB-like 2; hexameric 92.7 0.06 2.1E-06 54.2 3.5 27 135-161 69-95 (368)
486 1ofh_A ATP-dependent HSL prote 92.5 0.062 2.1E-06 52.5 3.3 25 136-160 50-74 (310)
487 3p32_A Probable GTPase RV1496/ 92.5 0.061 2.1E-06 54.6 3.3 27 135-161 78-104 (355)
488 3hws_A ATP-dependent CLP prote 92.5 0.06 2.1E-06 54.6 3.2 26 135-160 50-75 (363)
489 1puj_A YLQF, conserved hypothe 92.5 0.071 2.4E-06 52.5 3.6 25 136-160 120-144 (282)
490 3th5_A RAS-related C3 botulinu 91.6 0.024 8.4E-07 52.0 0.0 22 138-159 32-53 (204)
491 1wxq_A GTP-binding protein; st 92.3 0.063 2.2E-06 55.6 3.1 22 139-160 3-24 (397)
492 3r7w_A Gtpase1, GTP-binding pr 92.2 0.074 2.5E-06 52.8 3.3 23 137-159 4-26 (307)
493 1knx_A Probable HPR(Ser) kinas 92.2 0.14 4.8E-06 51.3 5.3 34 124-158 136-169 (312)
494 2qby_B CDC6 homolog 3, cell di 92.2 0.08 2.7E-06 53.5 3.6 26 135-160 44-69 (384)
495 2hjg_A GTP-binding protein ENG 92.2 0.062 2.1E-06 56.2 2.8 22 138-159 5-26 (436)
496 3gj0_A GTP-binding nuclear pro 92.1 0.049 1.7E-06 50.7 1.8 21 139-159 18-39 (221)
497 1g8f_A Sulfate adenylyltransfe 92.0 0.073 2.5E-06 57.0 3.2 28 134-161 393-420 (511)
498 2x2e_A Dynamin-1; nitration, h 91.9 0.049 1.7E-06 55.3 1.7 23 138-160 33-55 (353)
499 3l0i_B RAS-related protein RAB 91.9 0.016 5.6E-07 53.1 -1.7 22 139-160 36-57 (199)
500 2qen_A Walker-type ATPase; unk 91.9 0.095 3.2E-06 51.9 3.7 24 136-159 31-54 (350)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.9e-50 Score=417.55 Aligned_cols=222 Identities=22% Similarity=0.278 Sum_probs=194.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||+++|..+. ....+|+||||+|++||++||+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 23 ~mi~v~~ls~~y~~~~-~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 23 HMIKLSNITKVFHQGT-RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSES 98 (366)
T ss_dssp CCEEEEEEEEEEECSS-SEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHH
T ss_pred ceEEEEeEEEEeCCCC-CCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHH
Confidence 4699999999996421 2356999999999999999999999999999999999999997 49999999886421
Q ss_pred -----CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
++.+||++|++.+++.+||+||+.++...... ...+.+++++++|+.+||.+..++ +|.+||||||||
T Consensus 99 ~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~-~~~~~~~~v~~lL~~vgL~~~~~~------~~~~LSGGqkQR 171 (366)
T 3tui_C 99 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT-PKDEVKRRVTELLSLVGLGDKHDS------YPSNLSGGQKQR 171 (366)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTCGGGTTC------CTTTSCHHHHHH
T ss_pred HHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchHhcC------ChhhCCHHHHHH
Confidence 24699999999999999999999998765422 223456789999999999988776 455999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+|||||+.+|+||||||||+|||+.++..|+++|++++++ |.|||+++|+. ..+..+||||++|++|++++.|++.+
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999754 99999988876 68889999999999999999999988
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
++.
T Consensus 251 v~~ 253 (366)
T 3tui_C 251 VFS 253 (366)
T ss_dssp HHS
T ss_pred HHh
Confidence 753
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=5e-50 Score=416.79 Aligned_cols=217 Identities=28% Similarity=0.398 Sum_probs=193.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.|+++||+++|. .+.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~yg-----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAWG-----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGG
T ss_pred EEEEEeEEEEEC-----CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHH
Confidence 489999999993 457999999999999999999999999999999999999997 4999999987532 23
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.+|||+|++.+||.+||+||+.|+...+.. ...+.+++++++++.++|.++.++. |.+|||||||||+||||
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~------p~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGA-KKEVINQRVNQVAEVLQLAHLLDRK------PKALSGGQRQRVAIGRT 147 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHTTC-CHHHHHHHHHHHHHHTTCGGGTTCC------GGGSCHHHHHHHHHHHH
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCchhhcCC------hhHCCHHHHHHHHHHHH
Confidence 5799999999999999999999998765422 2234567899999999999888775 45999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||++||+..+.++++.|+++.++ |.|+|++||+. .++..+||||++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999999999999999999765 99999988875 68999999999999999999999998764
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.9e-50 Score=417.18 Aligned_cols=217 Identities=22% Similarity=0.323 Sum_probs=190.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC----CC-
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS----EM- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~----~~- 179 (513)
.|+++||+++|. .+.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++. ..
T Consensus 4 ~l~i~~ls~~y~-----~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-----NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBC
T ss_pred EEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECccccccc
Confidence 589999999993 457999999999999999999999999999999999999997 49999999875 11
Q ss_pred --CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHH
Q 010314 180 --PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVR 257 (513)
Q Consensus 180 --~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~ 257 (513)
..+.+|||+|++.+||.+||+||+.|+...+.. ...+.+++++++++.++|.+++++.+ .+|||||||||+
T Consensus 76 ~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~-~~~~~~~~v~~~l~~~gL~~~~~r~~------~~LSGGq~QRVa 148 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG-RTAQERQRIEAMLELTGISELAGRYP------HELSGGQQQRAA 148 (359)
T ss_dssp CGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC-CSHHHHHHHHHHHHHHTCGGGTTSCG------GGSCHHHHHHHH
T ss_pred chhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHcCCchHhcCCh------hhCCHHHHHHHH
Confidence 135799999999999999999999887543221 11345678999999999999888754 599999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 258 IARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 258 IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||||+.+|+||||||||+|||+..+.++++.|+++. +.|.|+|+++|+. .++..+||||++|++|+++..|+++++.
T Consensus 149 lArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el~ 227 (359)
T 3fvq_A 149 LARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHELY 227 (359)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHHH
Confidence 9999999999999999999999999999999888875 4699999988875 6899999999999999999999999876
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 228 ~ 228 (359)
T 3fvq_A 228 R 228 (359)
T ss_dssp H
T ss_pred h
Confidence 4
No 4
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=8.1e-50 Score=397.59 Aligned_cols=217 Identities=24% Similarity=0.249 Sum_probs=189.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (513)
.++++||++.|. .+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++..
T Consensus 6 ~l~i~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 77 (262)
T 1b0u_A 6 KLHVIDLHKRYG-----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKD 77 (262)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTT
T ss_pred eEEEeeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccccccc
Confidence 589999999993 346999999999999999999999999999999999999987 499999998753
Q ss_pred -----C-------CCceEEEEcCCcccCCCCCHHHHHHHHH-HhcCCCchhhHHHHHHHHHHHcCChhH-HhhhhcCCCC
Q 010314 179 -----M-------PYGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCY 244 (513)
Q Consensus 179 -----~-------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~ 244 (513)
. .++.++|++|++.+++.+||+||+.++. ... .....+..++++++++.+||.+. .++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~----- 151 (262)
T 1b0u_A 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL-GLSKHDARERALKYLAKVGIDERAQGKYP----- 151 (262)
T ss_dssp SSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----
T ss_pred ccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc-CCCHHHHHHHHHHHHHHcCCCchhhcCCc-----
Confidence 1 1245999999999999999999998864 222 11112345678999999999988 87755
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCC
Q 010314 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (513)
Q Consensus 245 ~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (513)
.+|||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. .++..+||+|++|++|
T Consensus 152 -~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G 229 (262)
T 1b0u_A 152 -VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQG 229 (262)
T ss_dssp -GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEETT
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 49999999999999999999999999999999999999999999999987799999988875 5788899999999999
Q ss_pred eEEEEeChHHHHH
Q 010314 325 NTLFFGETLACLQ 337 (513)
Q Consensus 325 ~iv~~G~~~~~~~ 337 (513)
++++.|+++++..
T Consensus 230 ~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 230 KIEEEGDPEQVFG 242 (262)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEeCCHHHHHh
Confidence 9999999987653
No 5
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1e-49 Score=390.82 Aligned_cols=218 Identities=28% Similarity=0.311 Sum_probs=185.1
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++||+++|.++. ..+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+....
T Consensus 2 l~~~~l~~~y~~~~-~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 2 VKLKNVTKTYKMGE-EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp EEEEEEEEEEEETT-EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHH
T ss_pred EEEEEEEEEeCCCC-cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHH
Confidence 78999999996321 1246999999999999999999999999999999999999997 49999999875422
Q ss_pred ----CceEEEEcCCcccCCCCCHHHHHHHHHHhcC--CCchhhHHHHHHHHHHHcCChhHH-hhhhcCCCCCCCCCHHHH
Q 010314 181 ----YGSYGFVERETTLIGSLTVREYLYYSALLQL--PGFFCQRKNVVEDAIHAMSLSDYA-NKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~--~~~~~~~~~~v~~~l~~~~L~~~~-~~~vg~~~~~~~LSGGqr 253 (513)
++.+||++|++.+++.+||+||+.++..... .....+..+++.++++.++|.+.. ++ ++.+||||||
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~~LSgGq~ 151 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH------KPNQLSGGQQ 151 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTC------CGGGSCHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhC------ChhhCCHHHH
Confidence 1359999999999999999999998765432 111234456788999999998653 65 4559999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
|||+|||||+.+|+||||||||+|||+.++..++++|++++++ |+|||+++|+. . +..+||+|++|++|+++..+++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~-~-~~~~~d~i~~l~~G~i~~~~~~ 229 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-N-VARFGERIIYLKDGEVEREEKL 229 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-H-HHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEEECCEEEEEcCh
Confidence 9999999999999999999999999999999999999999865 99999988886 3 4589999999999999999987
Q ss_pred HHH
Q 010314 333 LAC 335 (513)
Q Consensus 333 ~~~ 335 (513)
+++
T Consensus 230 ~~~ 232 (235)
T 3tif_A 230 RGF 232 (235)
T ss_dssp C--
T ss_pred hhh
Confidence 663
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.2e-49 Score=398.69 Aligned_cols=219 Identities=23% Similarity=0.309 Sum_probs=189.5
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||+++|.+ ...+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 6 ~~l~i~~ls~~y~~----~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~ 78 (275)
T 3gfo_A 6 YILKVEELNYNYSD----GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKG 78 (275)
T ss_dssp EEEEEEEEEEECTT----SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHH
T ss_pred cEEEEEEEEEEECC----CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCccccc
Confidence 36899999999842 245999999999999999999999999999999999999997 49999999886321
Q ss_pred ----CceEEEEcCCcc-cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 ----YGSYGFVERETT-LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 ----~~~~~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
++.+||++|++. .+..+||+||+.++..... ....+..++++++++.++|.++.++.+ .+||||||||
T Consensus 79 ~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LSgGqkQR 151 (275)
T 3gfo_A 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK-LPEDEIRKRVDNALKRTGIEHLKDKPT------HCLSFGQKKR 151 (275)
T ss_dssp HHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHTTCGGGTTSBG------GGSCHHHHHH
T ss_pred HHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhcCCc------ccCCHHHHHH
Confidence 246999999862 3347899999998865432 122345677999999999998887755 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+|||||+.+|+||||||||+|||+.++..++++|++++ ++|+|||+++|+. ..+..+||+|++|++|++++.|++++
T Consensus 152 v~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~~~~ 230 (275)
T 3gfo_A 152 VAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKE 230 (275)
T ss_dssp HHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999997 5699999999987 47889999999999999999999988
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
++.
T Consensus 231 ~~~ 233 (275)
T 3gfo_A 231 VFA 233 (275)
T ss_dssp HTH
T ss_pred Hhc
Confidence 754
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.3e-49 Score=396.22 Aligned_cols=217 Identities=24% Similarity=0.302 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--C-C-
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--M-P- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~-~- 180 (513)
.++++||++.|. .+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++.. . .
T Consensus 24 ~l~i~~l~~~y~-----~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 95 (263)
T 2olj_A 24 MIDVHQLKKSFG-----SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNL 95 (263)
T ss_dssp SEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCH
T ss_pred eEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccH
Confidence 599999999993 346999999999999999999999999999999999999987 499999998763 1 1
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHH-HhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSA-LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
++.++|++|++.+++.+||+||+.++. .... ....+..++++++++.++|.+..++.+ .+|||||||||
T Consensus 96 ~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~------~~LSgGqkQRv 168 (263)
T 2olj_A 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRK-WPREKAEAKAMELLDKVGLKDKAHAYP------DSLSGGQAQRV 168 (263)
T ss_dssp HHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHTTCGGGTTSCG------GGSCHHHHHHH
T ss_pred HHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCCchHhcCCh------hhCCHHHHHHH
Confidence 235999999999999999999998864 2221 111234567899999999998877754 49999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. .++..+||++++|++|++++.|+++++.
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDLF 247 (263)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999987799999988875 5788899999999999999999998765
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 248 ~ 248 (263)
T 2olj_A 248 D 248 (263)
T ss_dssp H
T ss_pred h
Confidence 3
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.4e-49 Score=384.28 Aligned_cols=210 Identities=25% Similarity=0.278 Sum_probs=183.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++.|. .+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+....
T Consensus 4 ~l~~~~l~~~y~-----~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 75 (224)
T 2pcj_A 4 ILRAENIKKVIR-----GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKE 75 (224)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHH
T ss_pred EEEEEeEEEEEC-----CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHH
Confidence 589999999993 356999999999999999999999999999999999999987 49999999875321
Q ss_pred -----CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 181 -----YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 181 -----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
.+.++|++|++.+++.+||+||+.++..... ....+..++++++++.++|.+..++.+ .+||||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qr 148 (224)
T 2pcj_A 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG-KPKKEAKERGEYLLSELGLGDKLSRKP------YELSGGEQQR 148 (224)
T ss_dssp HHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHTTCTTCTTCCG------GGSCHHHHHH
T ss_pred HHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC-CCHHHHHHHHHHHHHHcCCchhhhCCh------hhCCHHHHHH
Confidence 1459999999999999999999988754431 111234567899999999988877754 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
|+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. ..+ .+||++++|++|++++.|+
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 149 VAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999999999987799999988885 455 8999999999999999886
No 9
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.7e-49 Score=394.13 Aligned_cols=215 Identities=20% Similarity=0.225 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++.|. .+++|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 7 ~l~i~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~ 78 (257)
T 1g6h_A 7 ILRTENIVKYFG-----EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAE 78 (257)
T ss_dssp EEEEEEEEEEET-----TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHH
T ss_pred EEEEeeeEEEEC-----CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHH
Confidence 589999999993 346999999999999999999999999999999999999987 49999999876421
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHh-cCC-----------CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCC
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALL-QLP-----------GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMK 246 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~-~~~-----------~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~ 246 (513)
++.++|++|++.+++.+||+||+.++... ... ....+..++++++++.+||.+..++.+ .
T Consensus 79 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~ 152 (257)
T 1g6h_A 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA------G 152 (257)
T ss_dssp HHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG------G
T ss_pred HHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc------h
Confidence 23599999999999999999999876432 111 111234567899999999998887755 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
+|||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. .++..+||++++|++|++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i 231 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL-DIVLNYIDHLYVMFNGQI 231 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-STTGGGCSEEEEEETTEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999987799999998887 478889999999999999
Q ss_pred EEEeChHH
Q 010314 327 LFFGETLA 334 (513)
Q Consensus 327 v~~G~~~~ 334 (513)
++.|++++
T Consensus 232 ~~~g~~~~ 239 (257)
T 1g6h_A 232 IAEGRGEE 239 (257)
T ss_dssp EEEEESHH
T ss_pred EEEeCHHH
Confidence 99999887
No 10
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.3e-49 Score=389.32 Aligned_cols=218 Identities=27% Similarity=0.309 Sum_probs=190.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||++.|. .+.+|++|||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 14 ~~l~i~~l~~~y~-----~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 85 (256)
T 1vpl_A 14 GAVVVKDLRKRIG-----KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHE 85 (256)
T ss_dssp CCEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHH
T ss_pred CeEEEEEEEEEEC-----CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHH
Confidence 3689999999993 356999999999999999999999999999999999999987 49999999875321
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
++.++|++|++.+++.+||+||+.+...+... ...+..++++++++.++|.+..++.+ .+|||||||||+||
T Consensus 86 ~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~gL~~~~~~~~------~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS-SSSEIEEMVERATEIAGLGEKIKDRV------STYSKGMVRKLLIA 158 (256)
T ss_dssp HHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHCCGGGGGSBG------GGCCHHHHHHHHHH
T ss_pred HhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHCCCchHhcCCh------hhCCHHHHHHHHHH
Confidence 24699999999999999999999886543211 11233467889999999998888755 49999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. .++..+||++++|++|++++.|+++++..
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999987799999988876 57888999999999999999999988754
No 11
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6e-49 Score=386.47 Aligned_cols=216 Identities=22% Similarity=0.282 Sum_probs=186.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||++.|. .+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++....
T Consensus 5 ~~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~ 76 (240)
T 1ji0_A 5 IVLEVQSLHVYYG-----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAH 76 (240)
T ss_dssp EEEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHH
T ss_pred ceEEEEeEEEEEC-----CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHH
Confidence 3589999999994 346999999999999999999999999999999999999987 49999999876321
Q ss_pred ---CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcC-ChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 181 ---YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMS-LSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 181 ---~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~-L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
.+.++|++|++.+++.+||+||+.++....... .+..+.++++++.++ |.+..++. +.+|||||||||
T Consensus 77 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~--~~~~~~~~~~l~~~~~l~~~~~~~------~~~LSgGq~qrv 148 (240)
T 1ji0_A 77 VINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK--EGIKRDLEWIFSLFPRLKERLKQL------GGTLSGGEQQML 148 (240)
T ss_dssp HHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCS--SHHHHHHHHHHHHCHHHHTTTTSB------SSSSCHHHHHHH
T ss_pred HHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCH--HHHHHHHHHHHHHcccHhhHhcCC------hhhCCHHHHHHH
Confidence 134999999999999999999998753211111 234466788999995 87776664 459999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 257 RIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 257 ~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|+. .++..+||++++|++|++++.|+++++.
T Consensus 149 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 149 AIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999999999999999999999987799999988876 5788999999999999999999987764
No 12
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=8.4e-49 Score=404.87 Aligned_cols=220 Identities=25% Similarity=0.377 Sum_probs=193.1
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (513)
...++++||++.|. +.+.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 12 ~~~l~~~~l~~~y~----g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 84 (355)
T 1z47_A 12 SMTIEFVGVEKIYP----GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPP 84 (355)
T ss_dssp CEEEEEEEEEECCT----TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCG
T ss_pred CceEEEEEEEEEEc----CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCCh
Confidence 35799999999882 1346999999999999999999999999999999999999997 4999999987532
Q ss_pred CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 180 PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
..+.+|||+|+..+||.+||+||+.|+...+.. ...+.+++++++++.++|.++.++.+ .+|||||||||+||
T Consensus 85 ~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~-~~~~~~~~v~~~l~~~gL~~~~~r~~------~~LSGGq~QRvalA 157 (355)
T 1z47_A 85 QKRNVGLVFQNYALFQHMTVYDNVSFGLREKRV-PKDEMDARVRELLRFMRLESYANRFP------HELSGGQQQRVALA 157 (355)
T ss_dssp GGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHTTCGGGTTSCG------GGSCHHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHcCChhHhcCCc------ccCCHHHHHHHHHH
Confidence 235799999999999999999999998654321 12344677999999999998887754 59999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|||+.+|+||||||||+|||+..+..+++.|+++.++ |.|+|+++|+. .++..+||+|++|++|+++..|+++++..
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999999764 99999988875 68899999999999999999999988754
No 13
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.3e-48 Score=406.46 Aligned_cols=217 Identities=24% Similarity=0.348 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM----- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~----- 179 (513)
.++++||+++|. .+.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 3 GVRLVDVWKVFG-----EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTE
T ss_pred EEEEEeEEEEEC-----CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccc
Confidence 489999999993 356999999999999999999999999999999999999997 4999999976421
Q ss_pred ----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 180 ----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 180 ----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
..+.+|||+|+..+||++||+||+.|+...+.. ...+.+++++++++.++|.++.++.+ .+||||||||
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~~------~~LSGGq~QR 147 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV-PRQEIDQRVREVAELLGLTELLNRKP------RELSGGQRQR 147 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHTCGGGTTCCG------GGSCHHHHHH
T ss_pred cCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHCCCchHhcCCc------ccCCHHHHHH
Confidence 235799999999999999999999998654321 11344567999999999998887754 5999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLA 334 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~ 334 (513)
|+|||||+.+|+||||||||+|||+..+..+++.|+++.++ |.|+|+++|+. .++..+||+|++|++|+++..|++++
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 99999988876 58889999999999999999999998
Q ss_pred HHH
Q 010314 335 CLQ 337 (513)
Q Consensus 335 ~~~ 337 (513)
+..
T Consensus 227 l~~ 229 (372)
T 1g29_1 227 VYD 229 (372)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 14
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1e-48 Score=390.34 Aligned_cols=215 Identities=24% Similarity=0.313 Sum_probs=188.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||++.|. .+.+|+||||++++||++||+||||||||||+|+|+|+++|++ |+|.++|++....
T Consensus 10 ~~l~~~~l~~~~~-----~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 10 ALLEASHLHYHVQ-----QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSH---GECHLLGQNLNSWQPK 81 (266)
T ss_dssp CEEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSS---CEEEETTEETTTSCHH
T ss_pred ceEEEEeEEEEeC-----CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---cEEEECCEECCcCCHH
Confidence 3689999999993 4579999999999999999999999999999999999999975 9999999986432
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.+.++|++|++.+++.+||+||+.++.... .. .+.+++++++++.++|.++.++.+ .+|||||||||+|
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~QRv~i 152 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-GG--SQDRQALQQVMAQTDCLALAQRDY------RVLSGGEQQRVQL 152 (266)
T ss_dssp HHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-CS--TTHHHHHHHHHHHTTCSTTTTSBG------GGCCHHHHHHHHH
T ss_pred HHhheEEEEecCCccCCCCCHHHHHHhhhhhc-Cc--HHHHHHHHHHHHHcCChhHhcCCc------ccCCHHHHHHHHH
Confidence 245899999999888999999998764322 11 244567899999999998877755 4999999999999
Q ss_pred HHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 259 ARELVM------RPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 259 AraL~~------~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
||||+. +|+||||||||+|||+.++..++++|++++++ |+|||+++|+. .++..+||+|++|++|++++.|+
T Consensus 153 AraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g~ 231 (266)
T 4g1u_C 153 ARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACGT 231 (266)
T ss_dssp HHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEcC
Confidence 999999 99999999999999999999999999999865 57999988775 67889999999999999999999
Q ss_pred hHHHH
Q 010314 332 TLACL 336 (513)
Q Consensus 332 ~~~~~ 336 (513)
++++.
T Consensus 232 ~~~~~ 236 (266)
T 4g1u_C 232 PEEVL 236 (266)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 98864
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=8.6e-49 Score=405.61 Aligned_cols=217 Identities=23% Similarity=0.349 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.++++||++.|. .+.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 3 SIRVVNLKKYFG-----KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred EEEEEEEEEEEC-----CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhh
Confidence 489999999993 356999999999999999999999999999999999999997 4999999987532 23
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.+|||+|+..+||++||+||+.|+...+. ....+.+++++++++.++|.++.++.+ .+|||||||||+||||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~r~~------~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRARR-ISKDEVEKRVVEIARKLLIDNLLDRKP------TQLSGGQQQRVALARA 147 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSSC-SHHHHTTHHHHHHHHHTTCGGGTTSCG------GGSCHHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCchHhcCCh------hhCCHHHHHHHHHHHH
Confidence 579999999999999999999988643221 111234567899999999998887754 5999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||+|||+..+..+++.|+++.++ |.|+|+++|+. .++..+||+|++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999754 99999988876 57889999999999999999999998864
No 16
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1e-48 Score=405.53 Aligned_cols=217 Identities=25% Similarity=0.371 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.++++||++.|. .+.+|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 3 EIKLENIVKKFG-----NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKD 74 (362)
T ss_dssp CEEEEEEEEESS-----SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred EEEEEeEEEEEC-----CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhH
Confidence 489999999983 356999999999999999999999999999999999999997 4999999987532 23
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.+|||+|+..+||++||+||+.|+...+.. ...+.+++++++++.++|.++.++.+ .+|||||||||+||||
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~-~~~~~~~~v~~~l~~~~L~~~~~r~~------~~LSGGq~QRvalArA 147 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKA-PREEIDKKVREVAKMLHIDKLLNRYP------WQLSGGQQQRVAIARA 147 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHTTCTTCTTCCG------GGSCHHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcCCchHhhCCh------hhCCHHHHHHHHHHHH
Confidence 5799999999999999999999998654321 11344567999999999998887754 5999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||+|||+..+..+++.|+++.++ |.|+|+++|+. .++..+||+|++|++|+++..|+++++..
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999754 99999988875 58889999999999999999999998764
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=8.4e-49 Score=405.46 Aligned_cols=217 Identities=24% Similarity=0.339 Sum_probs=190.3
Q ss_pred eEEEEeEEEEEeccccccce--eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---
Q 010314 105 SVVWKDLTVTIKGKRRYSDK--VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--- 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--- 179 (513)
.++++||++.|. .+. +|+||||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++...
T Consensus 3 ~l~i~~l~~~y~-----~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~ 74 (353)
T 1oxx_K 3 RIIVKNVSKVFK-----KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGK 74 (353)
T ss_dssp CEEEEEEEEEEG-----GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTE
T ss_pred EEEEEeEEEEEC-----CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECccccc
Confidence 489999999994 345 999999999999999999999999999999999999997 4999999976421
Q ss_pred -----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHH
Q 010314 180 -----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERR 254 (513)
Q Consensus 180 -----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrq 254 (513)
..+.+|||+|+..+||.+||+||+.|+...+. ....+.+++++++++.++|.++.++.+ .+|||||||
T Consensus 75 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~~~~------~~LSGGq~Q 147 (353)
T 1oxx_K 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK-MSKEEIRKRVEEVAKILDIHHVLNHFP------RELSGAQQQ 147 (353)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS-CCHHHHHHHHHHHHHHTTCGGGTTSCG------GGSCHHHHH
T ss_pred ccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchHhcCCh------hhCCHHHHH
Confidence 23579999999999999999999988653321 111344567999999999999887754 599999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 255 RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 255 Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||+|||||+.+|+||||||||+|||+..+..+++.|+++.++ |.|+|+++|+. .++..+||+|++|++|+++..|+++
T Consensus 148 RvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~ 226 (353)
T 1oxx_K 148 RVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226 (353)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999754 99999988876 5889999999999999999999998
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 227 ~l~~ 230 (353)
T 1oxx_K 227 DLYD 230 (353)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.7e-48 Score=405.22 Aligned_cols=217 Identities=25% Similarity=0.343 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PY 181 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~ 181 (513)
.++++||++.|. .+.+|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++... ..
T Consensus 11 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 11 EVKLENLTKRFG-----NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKD 82 (372)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGG
T ss_pred eEEEEEEEEEEC-----CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhh
Confidence 489999999993 346999999999999999999999999999999999999997 4999999987532 23
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+.+|||+|+..+||++||+||+.|+...+. ....+.+++++++++.++|.+++++. |.+|||||||||+||||
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~-~~~~~~~~~v~~~l~~~~L~~~~~r~------~~~LSGGq~QRvalArA 155 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKK-FPKDEIDKRVRWAAELLQIEELLNRY------PAQLSGGQRQRVAVARA 155 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--C-CCHHHHHHHHHHHHHHTTCGGGTTSC------TTTCCSSCHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCChhHhcCC------hhhCCHHHHHHHHHHHH
Confidence 579999999999999999999988643221 11134456799999999999888775 45999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||+|||+..+..+++.|+++.++ |.|+|+++|+. .++..+||+|++|++|+++..|+++++..
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999765 99999988876 58889999999999999999999998864
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.3e-48 Score=399.92 Aligned_cols=211 Identities=24% Similarity=0.323 Sum_probs=187.7
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---Cc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---YG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---~~ 182 (513)
++++||+++|. .+ +|+|+||++++||+++|+||||||||||||+|+|+++|+ +|+|.++|++.... .+
T Consensus 2 l~~~~l~~~y~-----~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 2 IEIESLSRKWK-----NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp EEEEEEEEECS-----SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHH
T ss_pred EEEEEEEEEEC-----CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhC
Confidence 68999999983 34 999999999999999999999999999999999999997 49999999876421 35
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.+|||+|+..+||.+||+||+.|+...+... .. ++++++++.++|.++.++.+ .+|||||||||+|||||
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~---~~-~~v~~~l~~~~L~~~~~~~~------~~LSgGq~QRvalAraL 142 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---DP-KRVLDTARDLKIEHLLDRNP------LTLSGGEQQRVALARAL 142 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---CH-HHHHHHHHHTTCTTTTTSCG------GGSCHHHHHHHHHHHHT
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHHHcCCC---HH-HHHHHHHHHcCCchHhcCCh------hhCCHHHHHHHHHHHHH
Confidence 6999999999999999999999976543211 12 67899999999998887754 59999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
+.+|+||||||||+|||+..+..+++.|+++.+ .|.|+|+++|+. .++..+||+|++|++|+++..|+++++.
T Consensus 143 ~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp TSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999975 499999988876 5788999999999999999999998875
No 20
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1e-47 Score=383.26 Aligned_cols=221 Identities=22% Similarity=0.331 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCc
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYG 182 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~ 182 (513)
.++++||++.|.......+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+... .++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhh
Confidence 47899999999411000146999999999999999999999999999999999999987 4999999987531 135
Q ss_pred eEEEEcCCc-ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh--hHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 183 SYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 183 ~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.++|++|++ .+++.+||+||+.++.....+. .+..++++++++.+||. +..++.+ .+|||||||||+||
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~------~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD--RDPVPLVKKAMEFVGLDFDSFKDRVP------FFLSGGEKRRVAIA 150 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTT--SCSHHHHHHHHHHTTCCHHHHTTCCG------GGSCHHHHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCH--HHHHHHHHHHHHHcCcCCcccccCCh------hhCCHHHHHHHHHH
Confidence 699999995 5667799999998854221111 23346789999999998 8877754 49999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|+. ..+..+||++++|++|++++.|++.++..
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC-TTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999986799999998887 46788999999999999999999988764
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.6e-48 Score=380.15 Aligned_cols=211 Identities=24% Similarity=0.332 Sum_probs=183.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCc
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYG 182 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~ 182 (513)
++++||++.|. . +|+||||++++ |+++|+||||||||||+|+|+|+++|+ +|+|.++|.+... ..+
T Consensus 2 l~~~~l~~~y~-----~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 2 FLKVRAEKRLG-----N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CEEEEEEEEET-----T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTS
T ss_pred EEEEEEEEEeC-----C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhC
Confidence 68999999983 1 59999999999 999999999999999999999999987 4999999987532 235
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+||+||+.++.... .. ...+++++++++.+||.+..++.+ .+|||||||||+|||||
T Consensus 71 ~i~~v~q~~~l~~~ltv~enl~~~~~~~--~~-~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGqkqRv~lAral 141 (240)
T 2onk_A 71 GIGFVPQDYALFPHLSVYRNIAYGLRNV--ER-VERDRRVREMAEKLGIAHLLDRKP------ARLSGGERQRVALARAL 141 (240)
T ss_dssp CCBCCCSSCCCCTTSCHHHHHHTTCTTS--CH-HHHHHHHHHHHHTTTCTTTTTCCG------GGSCHHHHHHHHHHHHH
T ss_pred cEEEEcCCCccCCCCcHHHHHHHHHHHc--CC-chHHHHHHHHHHHcCCHHHhcCCh------hhCCHHHHHHHHHHHHH
Confidence 6999999999999999999998753221 11 122567889999999988877754 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
+.+|+||||||||+|||+.++..++++|++++++ |+|||+++|+. .++..+||++++|++|++++.|+++++..
T Consensus 142 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 142 VIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp TTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999754 99999988876 57889999999999999999999987653
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=3.5e-47 Score=376.07 Aligned_cols=214 Identities=18% Similarity=0.245 Sum_probs=177.7
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCCC--
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEMP-- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~--~~~~~~~~G~I~i~G~~~~~~-- 180 (513)
.++++||++.|. .+.+|+||||++++||+++|+||||||||||+|+|+|+ ++|+ +|+|.++|.+....
T Consensus 3 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASID-----GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCH
T ss_pred eEEEEeEEEEEC-----CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCH
Confidence 489999999993 35699999999999999999999999999999999998 6665 59999999875321
Q ss_pred ----CceEEEEcCCcccCCCCCHHHHHHHHHHh--cCCCchhhHHHHHHHHHHHcCC-hhHHhhhhcCCCCCCC-CCHHH
Q 010314 181 ----YGSYGFVERETTLIGSLTVREYLYYSALL--QLPGFFCQRKNVVEDAIHAMSL-SDYANKLIGGHCYMKG-LPCGE 252 (513)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~--~~~~~~~~~~~~v~~~l~~~~L-~~~~~~~vg~~~~~~~-LSGGq 252 (513)
...++|++|++.+++.+||+||+.+.... .......+..+++.++++.+|| .++.++.++ + |||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~------~~LSgGq 148 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN------EGFSGGE 148 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT------CC----H
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc------cCCCHHH
Confidence 12489999999999999999999876431 1111112334678899999999 577777554 7 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhc-CCEEEEEeCCeEEEEeC
Q 010314 253 RRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLFFGE 331 (513)
Q Consensus 253 rqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~~G~ 331 (513)
||||+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. ..+..+ ||++++|++|++++.|+
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~-~~~~~~~~d~v~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ-RILNYIQPDKVHVMMDGRVVATGG 227 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSS-GGGGTSCCSEEEEEETTEEEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhcCCEEEEEECCEEEEEeC
Confidence 9999999999999999999999999999999999999999976799999999987 467777 59999999999999999
Q ss_pred hH
Q 010314 332 TL 333 (513)
Q Consensus 332 ~~ 333 (513)
++
T Consensus 228 ~~ 229 (250)
T 2d2e_A 228 PE 229 (250)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2e-47 Score=383.49 Aligned_cols=217 Identities=23% Similarity=0.283 Sum_probs=183.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CC-
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MP- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~- 180 (513)
+.++++||++.|. .+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++.. ..
T Consensus 20 ~~l~~~~l~~~y~-----~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~ 91 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ-----GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYS 91 (279)
T ss_dssp EEEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CC
T ss_pred ceEEEEeEEEEEC-----CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCC
Confidence 4699999999994 346999999999999999999999999999999999999997 499999998753 11
Q ss_pred ----CceEEEEcCCcccC--CCCCHHHHHHHHHHh--cC-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH
Q 010314 181 ----YGSYGFVERETTLI--GSLTVREYLYYSALL--QL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG 251 (513)
Q Consensus 181 ----~~~~~yv~Q~~~l~--~~lTV~E~l~~~~~~--~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG 251 (513)
++.++|++|++.++ +.+||+||+.++... .. .....+..++++++++.+||.+..++.+ .+||||
T Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~------~~LSgG 165 (279)
T 2ihy_A 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI------GYLSTG 165 (279)
T ss_dssp HHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG------GGSCHH
T ss_pred HHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh------hhCCHH
Confidence 24699999997643 356999999874211 00 0011233467889999999998887755 499999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE--EEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 252 ERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL--LFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 252 qrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tv--i~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
|||||+|||||+.+|+||||||||+|||+.++..++++|++++++|+|| |+++|+. .++..+||+|++|++|++++.
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~ 244 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQ 244 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998669999 9988886 477889999999999999999
Q ss_pred eChHHH
Q 010314 330 GETLAC 335 (513)
Q Consensus 330 G~~~~~ 335 (513)
|+++++
T Consensus 245 g~~~~~ 250 (279)
T 2ihy_A 245 GAVEDI 250 (279)
T ss_dssp EEHHHH
T ss_pred CCHHHH
Confidence 998775
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.8e-46 Score=371.61 Aligned_cols=208 Identities=24% Similarity=0.318 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.++++||++.|.. .+.+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.+ .+.+
T Consensus 4 ~l~i~~l~~~y~~----~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~--------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA----ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV--------YQSI 68 (253)
T ss_dssp EEEEEEEEEEETT----TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE--------CSCE
T ss_pred eEEEeeEEEEeCC----CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE--------eccE
Confidence 5899999999931 357999999999999999999999999999999999999987 499983 2469
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCC---CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLP---GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
+|++|++.+++.+||+||+.++...... .......++++++++.+||.+..++.+ .+|||||||||+||||
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qrv~lAra 142 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF------TSLSGGQRQLILIARA 142 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG------GGSCHHHHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh------hhCCHHHHHHHHHHHH
Confidence 9999999999999999999876422110 011233467899999999998887755 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|+. ..+..+||++++|++|+ ++.|+++++
T Consensus 143 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 143 IASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 99999999999999999999999999999999876 99999988876 57888999999999999 999988775
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.2e-46 Score=378.03 Aligned_cols=216 Identities=22% Similarity=0.337 Sum_probs=183.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||++.|.+ .+.+|+||||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++...
T Consensus 52 ~~i~~~~vs~~y~~----~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~ 124 (306)
T 3nh6_A 52 GRIEFENVHFSYAD----GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQA 124 (306)
T ss_dssp CCEEEEEEEEESST----TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHH
T ss_pred CeEEEEEEEEEcCC----CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHH
Confidence 36999999999952 356999999999999999999999999999999999999997 49999999986432
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqr 253 (513)
++.++||+|++.+|+ .||+|||.++.. . ...+.+.++++.+++.++.+.++.| ...+.+||||||
T Consensus 125 ~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~----~---~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqr 196 (306)
T 3nh6_A 125 SLRSHIGVVPQDTVLFN-DTIADNIRYGRV----T---AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEK 196 (306)
T ss_dssp HHHHTEEEECSSCCCCS-EEHHHHHHTTST----T---CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHH
T ss_pred HHhcceEEEecCCccCc-ccHHHHHHhhcc----c---CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHH
Confidence 346999999999985 599999976421 1 1234577888999998877665432 134568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+||||||||++||+.++..|++.|+++.+ ++|+|+++|+. ..+.. ||+|++|++|++++.|+++
T Consensus 197 QRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l-~~~~~-aD~i~vl~~G~iv~~G~~~ 273 (306)
T 3nh6_A 197 QRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRL-STVVN-ADQILVIKDGCIVERGRHE 273 (306)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSH-HHHHT-CSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcCh-HHHHc-CCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999864 78999988876 45655 9999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 274 el~~ 277 (306)
T 3nh6_A 274 ALLS 277 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 26
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.8e-46 Score=372.10 Aligned_cols=218 Identities=20% Similarity=0.226 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCceeEEEECCEeCCCC--
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSARMYGEVFVNGAKSEMP-- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~--~~~~~~~G~I~i~G~~~~~~-- 180 (513)
.++++||++.|. .+.+|+||||++++||+++|+||||||||||+|+|+|+. +|+ +|+|.++|.+....
T Consensus 20 ~l~~~~l~~~y~-----~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~ 91 (267)
T 2zu0_C 20 MLSIKDLHVSVE-----DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSP 91 (267)
T ss_dssp CEEEEEEEEEET-----TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCH
T ss_pred eEEEEeEEEEEC-----CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCH
Confidence 599999999993 356999999999999999999999999999999999994 454 59999999875321
Q ss_pred ----CceEEEEcCCcccCCCCCHHHHHHHHHH-h----cCCC-chhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCC
Q 010314 181 ----YGSYGFVERETTLIGSLTVREYLYYSAL-L----QLPG-FFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLP 249 (513)
Q Consensus 181 ----~~~~~yv~Q~~~l~~~lTV~E~l~~~~~-~----~~~~-~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LS 249 (513)
...++|++|++.+++.+||.||+.+... . .... ...+..++++++++.+||. +..++.++ .+||
T Consensus 92 ~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LS 166 (267)
T 2zu0_C 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN-----VGFS 166 (267)
T ss_dssp HHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT-----TTCC
T ss_pred HHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cCCC
Confidence 1248999999999999999999977541 1 1111 1123345788999999996 46665432 1499
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhc-CCEEEEEeCCeEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL-FDRICLLSNGNTLF 328 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~-~D~v~vL~~G~iv~ 328 (513)
|||||||+|||||+.+|+||||||||+|||+.++..++++|++++++|+|||+++|+. ..+..+ ||++++|++|++++
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG-GGGGTSCCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999976799999988886 466665 89999999999999
Q ss_pred EeChHHHH
Q 010314 329 FGETLACL 336 (513)
Q Consensus 329 ~G~~~~~~ 336 (513)
.|+++++.
T Consensus 246 ~g~~~~~~ 253 (267)
T 2zu0_C 246 SGDFTLVK 253 (267)
T ss_dssp EECTTHHH
T ss_pred EcCHHHHh
Confidence 99988764
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=6.9e-46 Score=366.20 Aligned_cols=216 Identities=25% Similarity=0.361 Sum_probs=182.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||++.|.+ ..+.+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+....
T Consensus 6 ~~~~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 6 HDITFRNIRFRYKP---DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEEESST---TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHH
T ss_pred CceeEEEEEEEeCC---CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 46899999999831 1346999999999999999999999999999999999999987 49999999886431
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqr 253 (513)
++.++|++|++.+++ .||+||+.++. +. ...+++.++++.+++.++.++.+.| ...+..||||||
T Consensus 80 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~~---~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~ 151 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLLN-RSIIDNISLAN----PG---MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQR 151 (247)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHTTTC----TT---CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHH
T ss_pred HHHhcEEEEeCCCcccc-ccHHHHHhccC----CC---CCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHH
Confidence 246999999999886 59999997641 11 1234578889999999887765311 124579999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+||||||||+|||+.++..+++.|+++. +|+|||+++|+.. .+ ..||++++|++|++++.|+++
T Consensus 152 qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~ 228 (247)
T 2ff7_A 152 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHK 228 (247)
T ss_dssp HHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999995 5899999998864 45 459999999999999999988
Q ss_pred HHH
Q 010314 334 ACL 336 (513)
Q Consensus 334 ~~~ 336 (513)
++.
T Consensus 229 ~l~ 231 (247)
T 2ff7_A 229 ELL 231 (247)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 28
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=5.9e-46 Score=366.99 Aligned_cols=205 Identities=22% Similarity=0.304 Sum_probs=179.9
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++. .+|+|+||++++||+++|+||||||||||+|+|+|+++| . |+|.++|.+....
T Consensus 4 ~l~~~~l~~~---------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~ 70 (249)
T 2qi9_C 4 VMQLQDVAES---------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATK 70 (249)
T ss_dssp EEEEEEEEET---------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHH
T ss_pred EEEEEceEEE---------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHH
Confidence 5889999864 489999999999999999999999999999999999988 3 9999999875321
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
.+.++|++|++.+++.+||+||+.+.. .... . .++++++++.+||.+..++.+ .+|||||||||+||
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~---~~~~--~-~~~~~~~l~~~~l~~~~~~~~------~~LSgGq~qrv~lA 138 (249)
T 2qi9_C 71 LALHRAYLSQQQTPPFATPVWHYLTLHQ---HDKT--R-TELLNDVAGALALDDKLGRST------NQLSGGEWQRVRLA 138 (249)
T ss_dssp HHHHEEEECSCCCCCTTCBHHHHHHTTC---SSTT--C-HHHHHHHHHHTTCGGGTTSBG------GGCCHHHHHHHHHH
T ss_pred HhceEEEECCCCccCCCCcHHHHHHHhh---ccCC--c-HHHHHHHHHHcCChhHhcCCh------hhCCHHHHHHHHHH
Confidence 246999999999999999999997642 1111 1 466889999999998877754 49999999999999
Q ss_pred HHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 260 RELVMRPH-------VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 260 raL~~~P~-------iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
|||+.+|+ ||||||||+|||+.++..++++|++++++|+|||+++|+. ..+..+||++++|++|++++.|++
T Consensus 139 raL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~ 217 (249)
T 2qi9_C 139 AVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRR 217 (249)
T ss_dssp HHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEH
T ss_pred HHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999 9999999999999999999999999987799999988875 578899999999999999999998
Q ss_pred HHH
Q 010314 333 LAC 335 (513)
Q Consensus 333 ~~~ 335 (513)
+++
T Consensus 218 ~~~ 220 (249)
T 2qi9_C 218 EEV 220 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=4.1e-46 Score=372.61 Aligned_cols=218 Identities=22% Similarity=0.272 Sum_probs=175.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC----
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---- 180 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---- 180 (513)
.++++||++.|.+. ..+.+|+||||.+++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+....
T Consensus 16 ~l~~~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~ 90 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH--PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHY 90 (271)
T ss_dssp CEEEEEEEECCTTC--TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHH
T ss_pred eEEEEEEEEEeCCC--CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHH
Confidence 59999999998421 1256999999999999999999999999999999999999987 49999999875321
Q ss_pred -CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCC-ch-h--hHHHHHHHHHHHc--CChhHHhhhhcCCCCCCCCCHHHH
Q 010314 181 -YGSYGFVERETTLIGSLTVREYLYYSALLQLPG-FF-C--QRKNVVEDAIHAM--SLSDYANKLIGGHCYMKGLPCGER 253 (513)
Q Consensus 181 -~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~-~--~~~~~v~~~l~~~--~L~~~~~~~vg~~~~~~~LSGGqr 253 (513)
++.++||+|++.+++ .||+||+.++... ... .. . .....+.++++.+ ||....++ ++.+||||||
T Consensus 91 ~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~------~~~~LSgGq~ 162 (271)
T 2ixe_A 91 LHTQVAAVGQEPLLFG-RSFRENIAYGLTR-TPTMEEITAVAMESGAHDFISGFPQGYDTEVGE------TGNQLSGGQR 162 (271)
T ss_dssp HHHHEEEECSSCCCCS-SBHHHHHHTTCSS-CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG------GGTTSCHHHH
T ss_pred HhccEEEEecCCcccc-ccHHHHHhhhccc-CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcC------CcCCCCHHHH
Confidence 246999999999887 5999999774211 111 00 0 0111234556666 45544444 3459999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeCh
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGET 332 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~ 332 (513)
|||+|||||+.+|+||||||||+|||+.++..++++|+++++ .|+|||+++|+. ..+. .||+|++|++|++++.|++
T Consensus 163 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~~-~~d~v~~l~~G~i~~~g~~ 240 (271)
T 2ixe_A 163 QAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLAE-RAHHILFLKEGSVCEQGTH 240 (271)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHHT-TCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHH-hCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999864 489999988876 4554 5999999999999999999
Q ss_pred HHHHH
Q 010314 333 LACLQ 337 (513)
Q Consensus 333 ~~~~~ 337 (513)
+++..
T Consensus 241 ~~l~~ 245 (271)
T 2ixe_A 241 LQLME 245 (271)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88754
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-46 Score=367.51 Aligned_cols=215 Identities=20% Similarity=0.305 Sum_probs=180.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----C
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----P 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----~ 180 (513)
++++||++.|. ..+.+|+||||++++||+++|+||||||||||+++|+|+++|++ |+|.++|.+... .
T Consensus 2 l~~~~l~~~y~----~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 74 (243)
T 1mv5_A 2 LSARHVDFAYD----DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA---GEITIDGQPIDNISLENW 74 (243)
T ss_dssp EEEEEEEECSS----SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSB---SCEEETTEESTTTSCSCC
T ss_pred EEEEEEEEEeC----CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---cEEEECCEEhhhCCHHHH
Confidence 68999999883 13469999999999999999999999999999999999999874 999999987532 2
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGERRR 255 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqrqR 255 (513)
++.++|++|++.+++ .||+||+.++.. +. ...+.+.++++.+++.++.++.+.| ...+..||||||||
T Consensus 75 ~~~i~~v~q~~~l~~-~tv~enl~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qr 147 (243)
T 1mv5_A 75 RSQIGFVSQDSAIMA-GTIRENLTYGLE---GD---YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQR 147 (243)
T ss_dssp TTTCCEECCSSCCCC-EEHHHHTTSCTT---SC---SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHH
T ss_pred HhhEEEEcCCCcccc-ccHHHHHhhhcc---CC---CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHH
Confidence 356999999999887 599999976311 11 1234578899999998877654321 12457999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|+||||||||+|||+.++..+++.|++++ +|+|||+++|+. ..+ ..||++++|++|++++.|+++++
T Consensus 148 v~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~ 224 (243)
T 1mv5_A 148 LAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRL-STI-VDADKIYFIEKGQITGSGKHNEL 224 (243)
T ss_dssp HHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSH-HHH-HHCSEEEEEETTEECCCSCHHHH
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCh-HHH-HhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999997 699999988886 455 46999999999999999998876
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
..
T Consensus 225 ~~ 226 (243)
T 1mv5_A 225 VA 226 (243)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=6.2e-46 Score=358.79 Aligned_cols=203 Identities=22% Similarity=0.314 Sum_probs=173.4
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
+..|+++||++.|. . .+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+.....+
T Consensus 8 ~~~l~~~~ls~~y~-----~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~ 78 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD-----K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKG 78 (214)
T ss_dssp -CEEEEEEEEEESS-----S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGGGG
T ss_pred CceEEEEEEEEEeC-----C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhhhhcC
Confidence 46799999999983 3 6999999999999999999999999999999999999987 4999999987532235
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|++.+++.+||+||+.+........ .+ .++++++++.++|.+. ++.+ .+|||||||||+|||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~--~~-~~~~~~~l~~~gl~~~-~~~~------~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVK--VN-KNEIMDALESVEVLDL-KKKL------GELSQGTIRRVQLASTL 148 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCC--CC-HHHHHHHHHHTTCCCT-TSBG------GGSCHHHHHHHHHHHHT
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcCCc--hH-HHHHHHHHHHcCCCcC-CCCh------hhCCHHHHHHHHHHHHH
Confidence 7999999999999999999998875432111 12 4668899999999877 6654 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeE
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~i 326 (513)
+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|+.. ++..+||+++++ .|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999867899999999874 788889988755 3443
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.7e-45 Score=362.12 Aligned_cols=209 Identities=22% Similarity=0.352 Sum_probs=179.6
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCCce
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGS 183 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~~~~ 183 (513)
++++||++.|.+.. ..+.+|+|+||+++ |++++|+||||||||||+|+|+|++ |+ +|+|.++|.+.. ..++.
T Consensus 2 l~~~~l~~~y~~~~-~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~ 75 (263)
T 2pjz_A 2 IQLKNVGITLSGKG-YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIR 75 (263)
T ss_dssp EEEEEEEEEEEEET-TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTT
T ss_pred EEEEEEEEEeCCCC-ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhh
Confidence 78999999995310 11469999999999 9999999999999999999999999 86 499999998642 11456
Q ss_pred EE-EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 184 YG-FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 184 ~~-yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
++ |++|++.+ .+||+||+.+...+. . ...++++++++.++|. +..++.+ .+|||||||||+||||
T Consensus 76 i~~~v~Q~~~l--~~tv~enl~~~~~~~--~---~~~~~~~~~l~~~gl~~~~~~~~~------~~LSgGqkqRv~lAra 142 (263)
T 2pjz_A 76 YSTNLPEAYEI--GVTVNDIVYLYEELK--G---LDRDLFLEMLKALKLGEEILRRKL------YKLSAGQSVLVRTSLA 142 (263)
T ss_dssp EEECCGGGSCT--TSBHHHHHHHHHHHT--C---CCHHHHHHHHHHTTCCGGGGGSBG------GGSCHHHHHHHHHHHH
T ss_pred eEEEeCCCCcc--CCcHHHHHHHhhhhc--c---hHHHHHHHHHHHcCCChhHhcCCh------hhCCHHHHHHHHHHHH
Confidence 99 99999887 889999998865432 1 2245688999999998 8877755 4999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCC-EEEEEeCCeEEEEeChHHHHH
Q 010314 262 LVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD-RICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 262 L~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D-~v~vL~~G~iv~~G~~~~~~~ 337 (513)
|+.+|+||||||||+|||+.++..+++.|+++++ |||+++|+. ..+..+|| ++++|++|++++.|+++++..
T Consensus 143 L~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 143 LASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp HHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999999999998854 999988886 46788999 999999999999999988764
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=7e-45 Score=361.62 Aligned_cols=217 Identities=24% Similarity=0.324 Sum_probs=179.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||++.|.+. ..+.+|+||||++++|++++|+||||||||||+|+|+|++++ +|+|.++|.+....
T Consensus 16 ~~l~i~~l~~~y~~~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~ 89 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQ--TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRN 89 (260)
T ss_dssp CCEEEEEEEECCTTC--CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHH
T ss_pred CeEEEEEEEEEeCCC--CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHH
Confidence 469999999998431 124699999999999999999999999999999999999875 39999999875321
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqr 253 (513)
++.++|++|++.+++ .||+||+.++. .. ...+.+.++++.+++.+..+.+..+ ..++..||||||
T Consensus 90 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~----~~---~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqk 161 (260)
T 2ghi_A 90 SIRSIIGIVPQDTILFN-ETIKYNILYGK----LD---ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGER 161 (260)
T ss_dssp HHHTTEEEECSSCCCCS-EEHHHHHHTTC----TT---CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHH
T ss_pred HHhccEEEEcCCCcccc-cCHHHHHhccC----CC---CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHH
Confidence 246999999999886 59999997631 11 1134567888889987765443211 235679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||+++|+.. .+ ..||++++|++|++++.|+++
T Consensus 162 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g~~~ 238 (260)
T 2ghi_A 162 QRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKGTHK 238 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999964 899999998864 44 469999999999999999988
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 239 ~l~~ 242 (260)
T 2ghi_A 239 DLLK 242 (260)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.6e-45 Score=380.93 Aligned_cols=215 Identities=21% Similarity=0.297 Sum_probs=181.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++||+++|.. ..+.+|+||||+|++||+++|+||||||||||||+|+|+++ + +|+|.++|++....
T Consensus 18 ~~i~~~~l~~~y~~---~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE---GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CCEEEEEEEEESSS---SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHH
T ss_pred CeEEEEEEEEEecC---CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChH
Confidence 46999999999952 23569999999999999999999999999999999999987 4 59999999875421
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqr 253 (513)
++.++||+|++.+|+ +||+||+.+. .. ..++++.++++.++|.++.++++... .....||||||
T Consensus 91 ~~rr~ig~v~Q~~~lf~-~tv~enl~~~-----~~---~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqr 161 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFS-GTFRKNLDPN-----AA---HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHK 161 (390)
T ss_dssp HHHHTEEEESCCCCCCS-EEHHHHHCTT-----CC---SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHH
T ss_pred HHhCCEEEEcCCcccCc-cCHHHHhhhc-----cc---cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHH
Confidence 257999999999997 6999999531 11 23456889999999999988865410 01123999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+||||||||+|||+..+..+++.|+++. .++|+|+++|+. ++...||+|++|++|+++..|+++
T Consensus 162 QRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~~~ 238 (390)
T 3gd7_A 162 QLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDSIL 238 (390)
T ss_dssp HHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESSHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999864 478999988875 355679999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 239 el~~ 242 (390)
T 3gd7_A 239 ELYH 242 (390)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8865
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.7e-44 Score=350.89 Aligned_cols=206 Identities=21% Similarity=0.291 Sum_probs=170.4
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.++++||++.|.. ..+.+|+||||++++|++++|+||||||||||+|+|+|+++|+ +|+|.++| .+
T Consensus 6 ~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g--------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEE---GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------RI 71 (229)
T ss_dssp EEEEEEEEECSST---TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC--------EE
Confidence 6899999998842 1356999999999999999999999999999999999999987 49999998 38
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHHHHHHHH
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRIA 259 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqrqRv~IA 259 (513)
+|++|++.+++. ||+||+.++. . .. ...+.++++.+++.+..+....+. ..+..|||||||||+||
T Consensus 72 ~~v~q~~~~~~~-tv~enl~~~~--~--~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lA 142 (229)
T 2pze_A 72 SFCSQFSWIMPG-TIKENIIFGV--S--YD----EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 142 (229)
T ss_dssp EEECSSCCCCSB-CHHHHHHTTS--C--CC----HHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHH
T ss_pred EEEecCCcccCC-CHHHHhhccC--C--cC----hHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 999999999885 9999997642 1 11 123455677778876655432111 23569999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVT-LKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~-L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||+.+|+||||||||+|||+.++..+++. ++++. +|+|||+++|+. ..+. .||++++|++|++++.|+++++.
T Consensus 143 ral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~-~~~~-~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 143 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHLK-KADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp HHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHHH-HCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCCh-HHHH-hCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999997 45654 488999988885 4554 59999999999999999988764
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=6.7e-44 Score=349.89 Aligned_cols=207 Identities=20% Similarity=0.256 Sum_probs=167.2
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.++++||++.|.. ..+.+|+||||++++|++++|+||||||||||+|+|+|+++|+ +|+|.++| .+
T Consensus 3 ~l~~~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g--------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWAR---SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG--------SV 68 (237)
T ss_dssp CEEEEEEEEESCT---TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS--------CE
T ss_pred eEEEEEEEEEeCC---CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC--------EE
Confidence 4899999999842 1356999999999999999999999999999999999999986 59999998 38
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhc-----CCCCCCCCCHHHHHHHHHH
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG-----GHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg-----~~~~~~~LSGGqrqRv~IA 259 (513)
+|++|++.+ +.+||+||+.++.. ... +..+++++.+++.+..+.... -...+.+|||||||||+||
T Consensus 69 ~~v~Q~~~~-~~~tv~enl~~~~~--~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lA 139 (237)
T 2cbz_A 69 AYVPQQAWI-QNDSLRENILFGCQ--LEE------PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 139 (237)
T ss_dssp EEECSSCCC-CSEEHHHHHHTTSC--CCT------THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHH
T ss_pred EEEcCCCcC-CCcCHHHHhhCccc--cCH------HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 999999865 57899999976421 111 123345555555433221100 0235679999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHH
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLK---KLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACL 336 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~---~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~ 336 (513)
|||+.+|+||||||||+|||+.++..+++.|. ++. +|+|||+++|+.. .+ ..||++++|++|++++.|+++++.
T Consensus 140 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 140 RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp HHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999999999995 443 4899999999874 44 579999999999999999988765
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 217 ~ 217 (237)
T 2cbz_A 217 A 217 (237)
T ss_dssp H
T ss_pred h
Confidence 3
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3e-42 Score=379.24 Aligned_cols=218 Identities=23% Similarity=0.306 Sum_probs=185.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC----
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---- 179 (513)
..++++|++++|++. .+.+|+|+|+++++||++||+||||||||||+++|+|+++|++ |+|.++|.+...
T Consensus 340 ~~i~~~~v~~~y~~~---~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~---G~i~~~g~~~~~~~~~ 413 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGK---EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS---GSICLDGHDVRDYKLT 413 (582)
T ss_pred CeEEEEEEEEEcCCC---CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC---CEEEECCEEhhhCCHH
Confidence 369999999999531 2469999999999999999999999999999999999999975 999999987532
Q ss_pred -CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHH
Q 010314 180 -PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (513)
Q Consensus 180 -~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqr 253 (513)
.++.++||+|++.+|+. ||+||+.++.. +. ..+++++++++.+++.++.++++.|.+ .+.+||||||
T Consensus 414 ~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~---~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~ 486 (582)
T 3b5x_A 414 NLRRHFALVSQNVHLFND-TIANNIAYAAE---GE---YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486 (582)
T ss_pred HHhcCeEEEcCCCccccc-cHHHHHhccCC---CC---CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHH
Confidence 13569999999999975 99999977421 11 224568899999999988777653322 3468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+||||||||++||+.++..+.+.|+++.+ |+|+|+++|++. .+ ..||+|++|++|++++.|+++
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHA 563 (582)
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999864 899999999874 44 479999999999999999998
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 564 ~l~~ 567 (582)
T 3b5x_A 564 DLLA 567 (582)
T ss_pred HHHh
Confidence 8754
No 38
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.4e-42 Score=379.79 Aligned_cols=219 Identities=21% Similarity=0.306 Sum_probs=182.7
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP----- 180 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~----- 180 (513)
++++|+++.|+++ ..+.+|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 342 i~~~~v~~~y~~~--~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~ 416 (595)
T 2yl4_A 342 LEFKNVHFAYPAR--PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWL 416 (595)
T ss_dssp EEEEEEEEECSSC--TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHH
T ss_pred EEEEEEEEEeCCC--CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHH
Confidence 9999999999532 1246999999999999999999999999999999999999987 49999999886431
Q ss_pred CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHHHH
Q 010314 181 YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGERRR 255 (513)
Q Consensus 181 ~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqrqR 255 (513)
++.++||+|++.+|+ .||+||+.++.. ......+++++++++.+++.++.++++.|.+ .+.+||||||||
T Consensus 417 ~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qr 491 (595)
T 2yl4_A 417 RSKIGTVSQEPILFS-CSIAENIAYGAD----DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQR 491 (595)
T ss_dssp HHSEEEECSSCCCCS-SBHHHHHHTTSS----STTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHH
T ss_pred HhceEEEccCCcccC-CCHHHHHhhcCC----CccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHH
Confidence 246999999999987 599999977421 1001234668899999999887766543222 347899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
|+|||||+.+|+||||||||++||+.++..+.+.|+++.+ |+|+|+++|++. .+ ..||+|++|++|++++.|+++++
T Consensus 492 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l 568 (595)
T 2yl4_A 492 IAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS-TI-KNANMVAVLDQGKITEYGKHEEL 568 (595)
T ss_dssp HHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECSCC-
T ss_pred HHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999976 899999888863 45 46999999999999999998876
Q ss_pred HH
Q 010314 336 LQ 337 (513)
Q Consensus 336 ~~ 337 (513)
..
T Consensus 569 ~~ 570 (595)
T 2yl4_A 569 LS 570 (595)
T ss_dssp --
T ss_pred Hh
Confidence 43
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=3e-42 Score=379.25 Aligned_cols=218 Identities=22% Similarity=0.296 Sum_probs=185.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|+++.|++. .+.+|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 340 ~~i~~~~v~~~y~~~---~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~ 413 (582)
T 3b60_A 340 GDLEFRNVTFTYPGR---EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLA 413 (582)
T ss_dssp CCEEEEEEEECSSSS---SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHH
T ss_pred CcEEEEEEEEEcCCC---CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHH
Confidence 359999999998521 256999999999999999999999999999999999999987 49999999886431
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqr 253 (513)
++.++||+|++.+|+. ||+||+.++.. +. ..+++++++++.+++.++.++++.|. ..+.+||||||
T Consensus 414 ~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~ 486 (582)
T 3b60_A 414 SLRNQVALVSQNVHLFND-TVANNIAYART---EE---YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR 486 (582)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHHTTTT---SC---CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHH
T ss_pred HHHhhCeEEccCCcCCCC-CHHHHHhccCC---CC---CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHH
Confidence 2469999999999975 99999976421 11 22456889999999998877754322 23468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+|||||||||+||+.++..+.+.|+++.+ |+|+|+++|++. .+ +.||+|++|++|++++.|+++
T Consensus 487 qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b60_A 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHS 563 (582)
T ss_dssp HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999965 899999999874 44 579999999999999999998
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 564 ~l~~ 567 (582)
T 3b60_A 564 ELLA 567 (582)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4.3e-42 Score=377.65 Aligned_cols=217 Identities=22% Similarity=0.302 Sum_probs=184.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|++++|++ ..+.+|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 338 ~~i~~~~v~~~y~~---~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~ 411 (578)
T 4a82_A 338 GRIDIDHVSFQYND---NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTG 411 (578)
T ss_dssp CCEEEEEEEECSCS---SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEEcCC---CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHH
Confidence 46999999999853 2346999999999999999999999999999999999999997 49999999886432
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqr 253 (513)
++.++||+|++.+|+. ||+||+.++ .+. ..++.+.++++.+++.+..+.++.|. ..+.+||||||
T Consensus 412 ~~r~~i~~v~Q~~~l~~~-tv~eni~~~----~~~---~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~ 483 (578)
T 4a82_A 412 SLRNQIGLVQQDNILFSD-TVKENILLG----RPT---ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK 483 (578)
T ss_dssp HHHHTEEEECSSCCCCSS-BHHHHHGGG----CSS---CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHH
T ss_pred HHhhheEEEeCCCccCcc-cHHHHHhcC----CCC---CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHH
Confidence 2469999999999976 999999764 121 22356788889999988776655332 23468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+||||||||||||+.++..+.+.|+++. +++|+|+++|+.. .+ ..||+|++|++|++++.|+++
T Consensus 484 Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~ 560 (578)
T 4a82_A 484 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHR 560 (578)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999985 4789999888874 44 569999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 561 el~~ 564 (578)
T 4a82_A 561 ELIA 564 (578)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-42 Score=378.92 Aligned_cols=217 Identities=25% Similarity=0.390 Sum_probs=183.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|++++|++ ..+.+|+|+||++++||++||+||||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 340 ~~i~~~~v~~~y~~---~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~ 413 (587)
T 3qf4_A 340 GSVSFENVEFRYFE---NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLK 413 (587)
T ss_dssp CCEEEEEEEECSSS---SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHH
T ss_pred CcEEEEEEEEEcCC---CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHH
Confidence 46999999999853 2356999999999999999999999999999999999999997 49999999875321
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcC-----CCCCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGG-----HCYMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~-----~~~~~~LSGGqr 253 (513)
++.++||+|++.+|+. ||+||+.++. +. ..++.+.++++..++.+..+.++.| ...+.+||||||
T Consensus 414 ~~r~~i~~v~Q~~~lf~~-tv~eni~~~~----~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqr 485 (587)
T 3qf4_A 414 DLRGHISAVPQETVLFSG-TIKENLKWGR----ED---ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQK 485 (587)
T ss_dssp HHHHHEEEECSSCCCCSE-EHHHHHTTTC----SS---CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHH
T ss_pred HHHhheEEECCCCcCcCc-cHHHHHhccC----CC---CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHH
Confidence 3569999999999965 9999996531 11 1234567778888887766554432 235678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.++..+.+.|+++. +|+|+|+++|+.. .+ ..||+|++|++|++++.|+++
T Consensus 486 Qrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~~-~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 486 QRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP-TA-LLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH-HH-TTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999985 5899999999864 44 589999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 563 el~~ 566 (587)
T 3qf4_A 563 ELLE 566 (587)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.5e-42 Score=379.76 Aligned_cols=216 Identities=23% Similarity=0.353 Sum_probs=183.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|++++|++ .+.+|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 353 ~~i~~~~v~~~y~~----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~ 425 (598)
T 3qf4_B 353 GEIEFKNVWFSYDK----KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRS 425 (598)
T ss_dssp CCEEEEEEECCSSS----SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEECCC----CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHH
Confidence 36999999999852 346999999999999999999999999999999999999997 49999999886432
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
++.++||+|++.+|+ .||+||+.++ .+. ..++.+.++++.+++.+..++++.|.+. ..+||||||
T Consensus 426 ~~r~~i~~v~Q~~~lf~-~tv~eni~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 426 SLRSSIGIVLQDTILFS-TTVKENLKYG----NPG---ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp HHHHHEEEECTTCCCCS-SBHHHHHHSS----STT---CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred HHHhceEEEeCCCcccc-ccHHHHHhcC----CCC---CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 346999999999986 5999999763 111 1224467788888888877776543322 258999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+|||||||||+||+.++..+.+.|+++. +|+|+|+++|+.. .+ ..||+|++|++|++++.|+++
T Consensus 498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~ 574 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHD 574 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999986 5899999999885 45 459999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 575 ~l~~ 578 (598)
T 3qf4_B 575 ELIQ 578 (598)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.2e-41 Score=343.29 Aligned_cols=203 Identities=21% Similarity=0.309 Sum_probs=157.9
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++||++.+ +.+|+|+||++++|++++|+||||||||||+|+|+|+++|+ +|+|.++| .
T Consensus 39 ~~l~~~~l~~~~-------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g--------~ 100 (290)
T 2bbs_A 39 DSLSFSNFSLLG-------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG--------R 100 (290)
T ss_dssp -----------C-------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS--------C
T ss_pred ceEEEEEEEEcC-------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC--------E
Confidence 358999998742 36999999999999999999999999999999999999986 59999988 3
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHHHHHHH
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGERRRVRI 258 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqrqRv~I 258 (513)
++|++|++.+++. ||+||+. +. ... ...+.++++.+++.+..+....+. ..+.+|||||||||+|
T Consensus 101 i~~v~Q~~~l~~~-tv~enl~-~~--~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~l 170 (290)
T 2bbs_A 101 ISFCSQNSWIMPG-TIKENII-GV--SYD------EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 170 (290)
T ss_dssp EEEECSSCCCCSS-BHHHHHH-TT--CCC------HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHH
T ss_pred EEEEeCCCccCcc-cHHHHhh-Cc--ccc------hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHH
Confidence 8999999998875 9999996 21 111 123456677788876655432111 1346899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTL-KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L-~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
||||+.+|+||||||||+|||+.++..+++.+ +++. .|+|||+++|+. ..+ ..||++++|++|++++.|+++++..
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHHhh
Confidence 99999999999999999999999999999974 5554 489999988886 455 4699999999999999999988753
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-40 Score=395.95 Aligned_cols=220 Identities=23% Similarity=0.365 Sum_probs=189.2
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++|+||+++|+++ ...++|+||||+|+|||.+||+|+||||||||+++|.|++.|++ |+|.+||.++...
T Consensus 1075 g~I~f~nVsf~Y~~~--~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~---G~I~iDG~di~~i~~~ 1149 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER--PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLG---GEIFIDGSEIKTLNPE 1149 (1321)
T ss_dssp CCEEEEEEEECCTTS--CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSS---SEEEETTEETTTBCHH
T ss_pred CeEEEEEEEEeCCCC--CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCC---CEEEECCEEhhhCCHH
Confidence 369999999999643 34469999999999999999999999999999999999999975 9999999986532
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCC-----CCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM-----KGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~-----~~LSGGqr 253 (513)
+++++||+|++.+|.. |++|||.|+. -+. ...++.+.++++..++.++...+++|.+.+ ..||||||
T Consensus 1150 ~lR~~i~~V~Qdp~LF~g-TIreNI~~gl---d~~--~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQr 1223 (1321)
T 4f4c_A 1150 HTRSQIAIVSQEPTLFDC-SIAENIIYGL---DPS--SVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQK 1223 (1321)
T ss_dssp HHHTTEEEECSSCCCCSE-EHHHHHSSSS---CTT--TSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHH
T ss_pred HHHhheEEECCCCEeeCc-cHHHHHhccC---CCC--CCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHH
Confidence 3579999999999965 9999996531 111 234567899999999998877776655433 56999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+++|+|||||||||+||+.+...|.+.|+++. +|+|+|+++|... ....||+|+||++|+|+++|+++
T Consensus 1224 QriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld~G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1224 QRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVSNGTIIEKGTHT 1300 (1321)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEESSSSEEEEECHH
T ss_pred HHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998865 5899999999875 34679999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 1301 eLl~ 1304 (1321)
T 4f4c_A 1301 QLMS 1304 (1321)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.2e-39 Score=384.84 Aligned_cols=218 Identities=21% Similarity=0.287 Sum_probs=189.6
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++|+|++|+|++. ..+++|+|+||++++|+.+||+||||||||||+++|.|+++|. +|+|.+||.++...
T Consensus 414 g~I~~~nvsF~Y~~~--~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~ 488 (1321)
T 4f4c_A 414 GDITVENVHFTYPSR--PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLE 488 (1321)
T ss_dssp CCEEEEEEEECCSSS--TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHH
T ss_pred CcEEEEEeeeeCCCC--CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc---cCcccCCCccchhccHH
Confidence 369999999999643 3467999999999999999999999999999999999999997 49999999986542
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCC-----CCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCY-----MKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~-----~~~LSGGqr 253 (513)
++.++||+|++.+|. .||+|||.|+. +. ..++++.++++..++.++.+.++.|+.. ...||||||
T Consensus 489 ~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~----~~---~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQk 560 (1321)
T 4f4c_A 489 FLRKNVAVVSQEPALFN-CTIEENISLGK----EG---ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQK 560 (1321)
T ss_dssp HHHHHEEEECSSCCCCS-EEHHHHHHTTC----TT---CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHH
T ss_pred HHhhcccccCCcceeeC-CchhHHHhhhc----cc---chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHH
Confidence 357999999999995 49999997741 21 2356789999999999888777665543 356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
||++|||||+.+|+|||||||||+||+.+...+.+.|+++. +|+|+|+++|+.. ....||+|++|++|+|++.|+.+
T Consensus 561 QRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~ 637 (1321)
T 4f4c_A 561 QRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHR 637 (1321)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHH
Confidence 99999999999999999999999999999999999999986 4889999999975 46789999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 638 eL~~ 641 (1321)
T 4f4c_A 638 ALMA 641 (1321)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8764
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=9e-39 Score=378.74 Aligned_cols=218 Identities=22% Similarity=0.293 Sum_probs=183.3
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|++++|+++ ...++|+||||++++||++||+||||||||||+++|+|+++|+ +|+|.++|.++...
T Consensus 386 g~i~~~~v~~~y~~~--~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~ 460 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSR--KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVR 460 (1284)
T ss_dssp CCEEEEEEEECCSST--TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHH
T ss_pred CeEEEEEEEEEcCCC--CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEHHhCCHH
Confidence 369999999999642 2346999999999999999999999999999999999999997 49999999885432
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCC-----CCCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGH-----CYMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~-----~~~~~LSGGqr 253 (513)
++.++||+|++.+|+. ||+||+.++. +. ..++.+.++++..++.+....++.|. ..+.+||||||
T Consensus 461 ~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~----~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~ 532 (1284)
T 3g5u_A 461 YLREIIGVVSQEPVLFAT-TIAENIRYGR----ED---VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQK 532 (1284)
T ss_dssp HHHHHEEEECSSCCCCSS-CHHHHHHHHC----SS---CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHH
T ss_pred HHHhheEEEcCCCccCCc-cHHHHHhcCC----CC---CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHH
Confidence 2469999999999976 9999998752 11 12355777888888877665554332 24568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+|||||||||+||+.+...+.+.|+.+. +|+|+|+++|+. ..+ ..||+|++|++|++++.|+.+
T Consensus 533 QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l-~~i-~~~d~i~vl~~G~i~~~g~~~ 609 (1284)
T 3g5u_A 533 QRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRL-STV-RNADVIAGFDGGVIVEQGNHD 609 (1284)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCH-HHH-TTCSEEEECSSSCCCCEECHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCH-HHH-HcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998875 589999988876 455 459999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
++..
T Consensus 610 ~l~~ 613 (1284)
T 3g5u_A 610 ELMR 613 (1284)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8764
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1e-38 Score=378.27 Aligned_cols=220 Identities=22% Similarity=0.299 Sum_probs=183.4
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--- 180 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--- 180 (513)
..++++|+++.|+++ ....+|+|+||++++||++||+||||||||||+++|+|+++|+ +|+|.++|.++...
T Consensus 1029 g~i~~~~v~~~y~~~--~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~ 1103 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTR--PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQ 1103 (1284)
T ss_dssp CCEEEEEEEBCCSCG--GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHH
T ss_pred CcEEEEEEEEECCCC--CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHH
Confidence 469999999999642 2346999999999999999999999999999999999999997 49999999876432
Q ss_pred --CceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCC-----CCCCCCHHHH
Q 010314 181 --YGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHC-----YMKGLPCGER 253 (513)
Q Consensus 181 --~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~-----~~~~LSGGqr 253 (513)
++.++||+|++.+|+ .||+||+.++. +.. ...++.+.++++..++.++.++++.|.+ ....||||||
T Consensus 1104 ~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~----~~~-~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~ 1177 (1284)
T 3g5u_A 1104 WLRAQLGIVSQEPILFD-CSIAENIAYGD----NSR-VVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQK 1177 (1284)
T ss_dssp HHTTSCEEEESSCCCCS-SBHHHHHTCCC----SSC-CCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHH
T ss_pred HHHhceEEECCCCcccc-ccHHHHHhccC----CCC-CCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHH
Confidence 356999999998885 69999996532 110 1123457778888888877766553322 3467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETL 333 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~ 333 (513)
|||+|||||+.+|+||||||||+|||+.+...|.+.|+++. +|+|||+++|+.. .+ ..||||++|++|++++.|+++
T Consensus 1178 Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1178 QRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQ 1254 (1284)
T ss_dssp HHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999998864 5899999898875 45 559999999999999999999
Q ss_pred HHHH
Q 010314 334 ACLQ 337 (513)
Q Consensus 334 ~~~~ 337 (513)
+++.
T Consensus 1255 ~l~~ 1258 (1284)
T 3g5u_A 1255 QLLA 1258 (1284)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.1e-38 Score=343.72 Aligned_cols=206 Identities=19% Similarity=0.201 Sum_probs=175.7
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
...++++|+++.|. ...|+++||.+++||++||+||||||||||+++|+|+++|++ |+|.+. .
T Consensus 285 ~~~l~~~~l~~~~~------~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~i~~~--------~ 347 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG------SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKIEWD--------L 347 (538)
T ss_dssp CEEEEECCEEEEET------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB---CCCCCC--------C
T ss_pred CeEEEEeeEEEEEC------CEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---eEEEEC--------c
Confidence 35799999998873 246899999999999999999999999999999999999874 998751 3
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|+..+.+.+||.|++........ ...+.++++++.+++.+..++.+ ..|||||||||+|||+|
T Consensus 348 ~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~------~~LSGGe~qrv~lAraL 416 (538)
T 1yqt_A 348 TVAYKPQYIKADYEGTVYELLSKIDASKL-----NSNFYKTELLKPLGIIDLYDREV------NELSGGELQRVAIAATL 416 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHHH-----TCHHHHHHTTTTTTCGGGTTSBG------GGCCHHHHHHHHHHHHH
T ss_pred eEEEEecCCcCCCCCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCChhhhcCCh------hhCCHHHHHHHHHHHHH
Confidence 58999999887788999998865311110 12356788999999987777655 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeChHHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQ 337 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~ 337 (513)
+.+|+||||||||+|||+.++..++++|+++++ .|.|||+++|+. .++..+||+|++|++ |+++..|+++++..
T Consensus 417 ~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999999999974 599999988875 688999999999986 78889999988765
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=4.8e-38 Score=346.13 Aligned_cols=206 Identities=19% Similarity=0.190 Sum_probs=176.4
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
...++++|+++.|. ...|++++|.+++||++||+||||||||||+|+|+|+++|++ |+|.+. .
T Consensus 355 ~~~l~~~~l~~~~~------~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~---G~I~~~--------~ 417 (607)
T 3bk7_A 355 ETLVEYPRLVKDYG------SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTE---GKVEWD--------L 417 (607)
T ss_dssp CEEEEECCEEEECS------SCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSB---SCCCCC--------C
T ss_pred ceEEEEeceEEEec------ceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCc---eEEEEe--------e
Confidence 35689999998873 246899999999999999999999999999999999999874 998761 3
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|+..+++.+||.|++....... ....+.++++++.++|.+..++.++ +|||||||||+|||||
T Consensus 418 ~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~~------~LSGGe~QRv~iAraL 486 (607)
T 3bk7_A 418 TVAYKPQYIKAEYEGTVYELLSKIDSSK-----LNSNFYKTELLKPLGIIDLYDRNVE------DLSGGELQRVAIAATL 486 (607)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHHHHH-----HHCHHHHHHTHHHHTCTTTTTSBGG------GCCHHHHHHHHHHHHH
T ss_pred EEEEEecCccCCCCCcHHHHHHhhhccC-----CCHHHHHHHHHHHcCCchHhcCChh------hCCHHHHHHHHHHHHH
Confidence 5999999988778899999886531100 0123567889999999887777554 9999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeChHHHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQ 337 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~ 337 (513)
+.+|+||||||||+|||+.++..++++|+++++ .|.|||+++|+. .++..+||+|++|++ |+++..|++++++.
T Consensus 487 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999999974 689999988875 688899999999986 88888999988765
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1e-37 Score=339.26 Aligned_cols=206 Identities=17% Similarity=0.242 Sum_probs=172.2
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
...++++|+++.|. ...|+++|+.+++||++||+||||||||||+++|+|+++|++ |+|.+++ .
T Consensus 267 ~~~l~~~~l~~~~~------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~~-------~ 330 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE---GSVTPEK-------Q 330 (538)
T ss_dssp CEEEEECCEEEEET------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSB---CCEESSC-------C
T ss_pred cceEEEcceEEEEC------CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---cEEEECC-------e
Confidence 45789999999873 246888899999999999999999999999999999999974 9999765 3
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.++|++|+......+||.||+.+... ... ......++++++.++|.+..++.+ .+|||||||||+|||||
T Consensus 331 ~i~~~~q~~~~~~~~tv~~~l~~~~~-~~~---~~~~~~~~~~l~~~~l~~~~~~~~------~~LSGGq~QRv~iAraL 400 (538)
T 3ozx_A 331 ILSYKPQRIFPNYDGTVQQYLENASK-DAL---STSSWFFEEVTKRLNLHRLLESNV------NDLSGGELQKLYIAATL 400 (538)
T ss_dssp CEEEECSSCCCCCSSBHHHHHHHHCS-STT---CTTSHHHHHTTTTTTGGGCTTSBG------GGCCHHHHHHHHHHHHH
T ss_pred eeEeechhcccccCCCHHHHHHHhhh-hcc---chhHHHHHHHHHHcCCHHHhcCCh------hhCCHHHHHHHHHHHHH
Confidence 58999998776678899999976321 110 112345788899999988777755 49999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeChHHH
Q 010314 263 VMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLAC 335 (513)
Q Consensus 263 ~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~ 335 (513)
+.+|+||||||||+|||+.++..++++|+++++ .|.|||+++|+. .++..+||||++|++ |.....+++.++
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 999999999999999999999999999999975 589999988775 688999999999986 556666666544
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-36 Score=332.53 Aligned_cols=203 Identities=18% Similarity=0.220 Sum_probs=166.6
Q ss_pred EeEEEEEeccccccceeeeeeeeEEeCC-----cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 109 KDLTVTIKGKRRYSDKVVKSSNGYALPG-----TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~i~~G-----e~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
+++++.|++ ...+++++||.+.+| |+++|+||||||||||+++|+|+++|++ |+. . ....
T Consensus 350 ~~~~~~y~~----~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~---G~~------~--~~~~ 414 (608)
T 3j16_B 350 ASRAFSYPS----LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDE---GQD------I--PKLN 414 (608)
T ss_dssp SSSCCEECC----EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSB---CCC------C--CSCC
T ss_pred cceeEEecC----cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCC---CcC------c--cCCc
Confidence 445566642 235788999999988 7899999999999999999999999974 752 1 1246
Q ss_pred EEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 010314 184 YGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (513)
Q Consensus 184 ~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~ 263 (513)
++|++|+.......||.|++... ... . ......++++++.++|.+..++. +.+|||||||||+|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~--~~~--~-~~~~~~~~~~l~~l~l~~~~~~~------~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKK--IRG--Q-FLNPQFQTDVVKPLRIDDIIDQE------VQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHH--CSS--T-TTSHHHHHHTHHHHTSTTTSSSB------SSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHH--hhc--c-cccHHHHHHHHHHcCChhhhcCC------hhhCCHHHHHHHHHHHHHH
Confidence 89999997666677999987532 111 1 11234578899999998877764 4599999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HcCCeEEEEEeCChHHHHhcCCEEEEEeC--CeEEEEeChHHHHHH
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLA-STGCTLLFTINQSSTEVFGLFDRICLLSN--GNTLFFGETLACLQH 338 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~i~~~~D~v~vL~~--G~iv~~G~~~~~~~~ 338 (513)
.+|+||||||||+|||+.++..++++|++++ +.|.|||+++|+. .++..+||||++|++ |+++..|++++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999999996 4699999988875 688999999999986 899999999887653
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=7.7e-35 Score=331.91 Aligned_cols=200 Identities=21% Similarity=0.303 Sum_probs=166.7
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
+..+...|+++.|. ++.+|+|+||.+++|++++|+||||||||||||+|+| |+| +|.+... ..
T Consensus 433 ~~~L~~~~ls~~yg-----~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~-~~ 495 (986)
T 2iw3_A 433 GEDLCNCEFSLAYG-----AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE-EC 495 (986)
T ss_dssp SCEEEEEEEEEEET-----TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT-TS
T ss_pred cceeEEeeEEEEEC-----CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc-ce
Confidence 45678889999983 3579999999999999999999999999999999995 222 3332211 12
Q ss_pred eEEEEcCCc-ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCC-hhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 183 SYGFVERET-TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSL-SDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 183 ~~~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L-~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
.++|++|+. .+++.+||.|++.+ .... . .+++.++++.+|| .+..++.++ +|||||||||+|||
T Consensus 496 ~~~~v~q~~~~~~~~ltv~e~l~~----~~~~---~-~~~v~~~L~~lgL~~~~~~~~~~------~LSGGqkQRvaLAr 561 (986)
T 2iw3_A 496 RTVYVEHDIDGTHSDTSVLDFVFE----SGVG---T-KEAIKDKLIEFGFTDEMIAMPIS------ALSGGWKMKLALAR 561 (986)
T ss_dssp CEEETTCCCCCCCTTSBHHHHHHT----TCSS---C-HHHHHHHHHHTTCCHHHHHSBGG------GCCHHHHHHHHHHH
T ss_pred eEEEEcccccccccCCcHHHHHHH----hhcC---H-HHHHHHHHHHcCCChhhhcCCcc------cCCHHHHHHHHHHH
Confidence 478999874 67889999999965 1111 1 4668899999999 467787655 99999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE-EEeChHHHHH
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL-FFGETLACLQ 337 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv-~~G~~~~~~~ 337 (513)
||+.+|+||||||||+|||+.++..++++|++ .|.|||+++|+. ..+..+||++++|++|+++ +.|+++++..
T Consensus 562 AL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 562 AVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999999999999999988 589999988775 6888999999999999997 6899988764
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.7e-36 Score=328.48 Aligned_cols=195 Identities=23% Similarity=0.214 Sum_probs=156.2
Q ss_pred EEE-EeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCE
Q 010314 106 VVW-KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV---------FVNGA 175 (513)
Q Consensus 106 l~~-~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I---------~i~G~ 175 (513)
.++ +||+++|.+ ...+|++|| .+++||++||+||||||||||+|+|+|+++|+. |++ .++|.
T Consensus 21 ~~~~~~ls~~yg~----~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~---G~~~~~~~~~~~~~~g~ 92 (538)
T 1yqt_A 21 EQLEEDCVHRYGV----NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL---CGDNDSWDGVIRAFRGN 92 (538)
T ss_dssp ---CCCEEEECST----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSHHHHHHHTTTS
T ss_pred hhHhcCcEEEECC----ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CccCcchhhhHHhhCCc
Confidence 455 589998842 124899999 999999999999999999999999999998875 775 35564
Q ss_pred eCC-------CCCceEEEEcCCcccCCC---CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCC
Q 010314 176 KSE-------MPYGSYGFVERETTLIGS---LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245 (513)
Q Consensus 176 ~~~-------~~~~~~~yv~Q~~~l~~~---lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~ 245 (513)
... .....+++++|....++. .|+.|++... +..++++++++.+||.+..++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----------~~~~~~~~~l~~lgl~~~~~~~~------ 156 (538)
T 1yqt_A 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA----------DETGKLEEVVKALELENVLEREI------ 156 (538)
T ss_dssp THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----------CSSSCHHHHHHHTTCTTTTTSBG------
T ss_pred cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----------hHHHHHHHHHHHcCCChhhhCCh------
Confidence 321 112357889887544332 3898887431 11234788999999988777755
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 246 KGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
.+|||||||||+|||||+.+|+||||||||++||+.++..+++.|+++++.|.|||+++|+. .++..+||+|++|++|.
T Consensus 157 ~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~-~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEET
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCcc
Confidence 49999999999999999999999999999999999999999999999987899999988875 68889999999998653
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.5e-36 Score=331.32 Aligned_cols=192 Identities=23% Similarity=0.245 Sum_probs=156.0
Q ss_pred EeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEE---------EECCEeCCC
Q 010314 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV---------FVNGAKSEM 179 (513)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I---------~i~G~~~~~ 179 (513)
+||++.|.+ ...+|+++| .+++||+++|+||||||||||||+|+|+++|+. |++ .++|.....
T Consensus 95 ~~ls~~yg~----~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~---G~~~~~~~~~~~~~~G~~~~~ 166 (607)
T 3bk7_A 95 EDCVHRYGV----NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNL---CEDNDSWDNVIRAFRGNELQN 166 (607)
T ss_dssp GSEEEECST----TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCT---TTTCCCHHHHHHHTTTSTHHH
T ss_pred CCeEEEECC----CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCC---CccccccchhhheeCCEehhh
Confidence 788888732 124899999 999999999999999999999999999999875 775 355643210
Q ss_pred -------CCceEEEEcCCcccCC---CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCC
Q 010314 180 -------PYGSYGFVERETTLIG---SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 -------~~~~~~yv~Q~~~l~~---~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LS 249 (513)
....+++++|....++ ..||.|++.. . +..++++++++.+||.+..++.++ +||
T Consensus 167 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~------~~~~~~~~~L~~lgL~~~~~~~~~------~LS 230 (607)
T 3bk7_A 167 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----V------DEVGKFEEVVKELELENVLDRELH------QLS 230 (607)
T ss_dssp HHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----T------CCSSCHHHHHHHTTCTTGGGSBGG------GCC
T ss_pred hhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----h------HHHHHHHHHHHHcCCCchhCCChh------hCC
Confidence 1234788888643322 2389998853 1 112347889999999988887654 999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
|||||||+|||||+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. ..+..+||+|++|+++.
T Consensus 231 GGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl-~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 231 GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHHhhCCEEEEECCCc
Confidence 9999999999999999999999999999999999999999999987799999988875 57889999999998653
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=7.1e-36 Score=333.63 Aligned_cols=207 Identities=18% Similarity=0.216 Sum_probs=138.7
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHH---------------------HHHHcCCCCCCC----ceeEEEECCEeC
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLL---------------------RAIAGRLPHSAR----MYGEVFVNGAKS 177 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl---------------------~~L~G~~~~~~~----~~G~I~i~G~~~ 177 (513)
+.+|+||||+|++||++||+||||||||||+ +++.|+.+|+.. ..|.|.++|...
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4689999999999999999999999999998 888888877621 136677777543
Q ss_pred CC-CCceEEEEcCCcc-------------------cCCCCCHHHHHHHHHHhcCCCchh-hHH------HHHHHHHHHcC
Q 010314 178 EM-PYGSYGFVERETT-------------------LIGSLTVREYLYYSALLQLPGFFC-QRK------NVVEDAIHAMS 230 (513)
Q Consensus 178 ~~-~~~~~~yv~Q~~~-------------------l~~~lTV~E~l~~~~~~~~~~~~~-~~~------~~v~~~l~~~~ 230 (513)
.. ....++|++|... .++.+||.||+.+...+....... ... ....++++.+|
T Consensus 111 ~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 190 (670)
T 3ux8_A 111 SRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVG 190 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTT
T ss_pred hccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 21 2233455554332 346789999997643222111000 000 01124588888
Q ss_pred ChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCC
Q 010314 231 LSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (513)
Q Consensus 231 L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~--iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (513)
|.+. .++.+ .+|||||||||+|||||+.+|+ ||||||||+|||+.++..++++|++++++|.|||+++|+.
T Consensus 191 L~~~~~~~~~------~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 191 LDYLTLSRSA------GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp CTTCCTTCBG------GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CchhhhcCCc------ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 8764 45544 4999999999999999999998 9999999999999999999999999988899999988875
Q ss_pred hHHHHhcCCEEEEE------eCCeEEEEeChHHHHH
Q 010314 308 STEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (513)
Q Consensus 308 ~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (513)
.. ...||+|++| ++|++++.|+++++..
T Consensus 265 -~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 265 -DT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp -HH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred -HH-HhhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 34 4569999999 8999999999988753
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=6.5e-35 Score=332.50 Aligned_cols=206 Identities=21% Similarity=0.311 Sum_probs=161.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCce
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGS 183 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~ 183 (513)
..++++|+++.|++ ..+.+|+|+||.+++|++++|+||||||||||+|+|+|+++|+ +|+|+++|. ..
T Consensus 670 ~mL~v~nLs~~Y~g---~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~---sG~I~~~~~------~~ 737 (986)
T 2iw3_A 670 AIVKVTNMEFQYPG---TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYTHEN------CR 737 (986)
T ss_dssp EEEEEEEEEECCTT---CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS---EEEEEECTT------CC
T ss_pred ceEEEEeeEEEeCC---CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEEcCc------cc
Confidence 46999999998842 1246999999999999999999999999999999999999997 499999863 24
Q ss_pred EEEEcCCccc----CCCCCHHHHHHHHHHhc------------C------------------------------------
Q 010314 184 YGFVERETTL----IGSLTVREYLYYSALLQ------------L------------------------------------ 211 (513)
Q Consensus 184 ~~yv~Q~~~l----~~~lTV~E~l~~~~~~~------------~------------------------------------ 211 (513)
++|++|+... ....|+.+++.+..... .
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 7888887521 12357777765421000 0
Q ss_pred ----------------------------CC------------------------chhhHHHHHHHHHHHcCChh-H-Hhh
Q 010314 212 ----------------------------PG------------------------FFCQRKNVVEDAIHAMSLSD-Y-ANK 237 (513)
Q Consensus 212 ----------------------------~~------------------------~~~~~~~~v~~~l~~~~L~~-~-~~~ 237 (513)
+. ......++++++++.+||.+ . .++
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~ 897 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS 897 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC
Confidence 00 00011356788999999975 3 465
Q ss_pred hhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCE
Q 010314 238 LIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (513)
Q Consensus 238 ~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (513)
.+ .+|||||||||+|||+|+.+|+||||||||+|||+.+...+++.|+++ +.|||+++|+. +.+..+||+
T Consensus 898 ~~------~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~-e~v~~l~Dr 967 (986)
T 2iw3_A 898 RI------RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSA-EFTKNLTEE 967 (986)
T ss_dssp CG------GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCH-HHHTTTCCE
T ss_pred Cc------cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCH-HHHHHhCCE
Confidence 44 499999999999999999999999999999999999999999888765 56999988775 578899999
Q ss_pred EEEEeCCeEEEEeC
Q 010314 318 ICLLSNGNTLFFGE 331 (513)
Q Consensus 318 v~vL~~G~iv~~G~ 331 (513)
+++|++|+++..|+
T Consensus 968 VivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 968 VWAVKDGRMTPSGH 981 (986)
T ss_dssp EECCBTTBCCC---
T ss_pred EEEEECCEEEEeCC
Confidence 99999999987764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=7.4e-34 Score=317.31 Aligned_cols=194 Identities=21% Similarity=0.222 Sum_probs=146.3
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHH----------------------cCCCCCCCceeEEEECCEeCCCCC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA----------------------GRLPHSARMYGEVFVNGAKSEMPY 181 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~----------------------G~~~~~~~~~G~I~i~G~~~~~~~ 181 (513)
.+|+||||+|++||++||+||||||||||+++|+ |+.++ .|.|.++|.+.....
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~----~~~i~~~~~~~~~~~ 411 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL----DKVIDIDQSPIGRTP 411 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC----SEEEECCSSCSCSST
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc----CceeEeccccCCCCC
Confidence 5799999999999999999999999999998764 22222 367777775432100
Q ss_pred ----------------------------------------------ceEEEEcCCcccCC--------------------
Q 010314 182 ----------------------------------------------GSYGFVERETTLIG-------------------- 195 (513)
Q Consensus 182 ----------------------------------------------~~~~yv~Q~~~l~~-------------------- 195 (513)
...|+++|+..+++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (670)
T 3ux8_A 412 RSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLE 491 (670)
T ss_dssp TCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHT
T ss_pred CcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhh
Confidence 01233333322222
Q ss_pred ------------CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHHH
Q 010314 196 ------------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIAREL 262 (513)
Q Consensus 196 ------------~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAraL 262 (513)
.+||.||+.+... . ...+++.+.++.++|.. ..++ ++.+|||||||||+|||||
T Consensus 492 ~~~~~~~~~~~~~ltv~e~l~~~~~----~---~~~~~~~~~l~~~~l~~~~~~~------~~~~LSgG~~qrv~iAraL 558 (670)
T 3ux8_A 492 VTYKGKNIAEVLDMTVEDALDFFAS----I---PKIKRKLETLYDVGLGYMKLGQ------PATTLSGGEAQRVKLAAEL 558 (670)
T ss_dssp CCBTTBCHHHHHTSBHHHHHHHTTT----C---HHHHHHHHHHHHTTCTTSBTTC------CGGGCCHHHHHHHHHHHHH
T ss_pred eeecCCCHHHHhhCCHHHHHHHHHH----h---hhHHHHHHHHHHcCCchhhccC------CchhCCHHHHHHHHHHHHH
Confidence 4789999876321 1 12244667888899864 2344 4559999999999999999
Q ss_pred hhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChH
Q 010314 263 VMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETL 333 (513)
Q Consensus 263 ~~~P---~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~ 333 (513)
+.+| +||||||||+|||+.++..++++|++++++|.|||+++|+. ..+ ..||+|++| ++|++++.|+++
T Consensus 559 ~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~-~~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~ 636 (670)
T 3ux8_A 559 HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DVI-KTADYIIDLGPEGGDRGGQIVAVGTPE 636 (670)
T ss_dssp HSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred hhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHH-HhCCEEEEecCCcCCCCCEEEEecCHH
Confidence 9987 59999999999999999999999999988899999988886 344 679999999 899999999998
Q ss_pred HHH
Q 010314 334 ACL 336 (513)
Q Consensus 334 ~~~ 336 (513)
++.
T Consensus 637 ~~~ 639 (670)
T 3ux8_A 637 EVA 639 (670)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.5e-33 Score=306.26 Aligned_cols=186 Identities=19% Similarity=0.189 Sum_probs=142.1
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEE-----------ECCEeCCC-------CCceEE
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF-----------VNGAKSEM-------PYGSYG 185 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~-----------i~G~~~~~-------~~~~~~ 185 (513)
..|++++ .+++||++||+||||||||||||+|+|+++|+. |+|. +.|..... ......
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~---G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 167 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCT---TTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCC---ceEecccchhhhhheecChhhhhhhhHHHHHhhhhh
Confidence 4677776 589999999999999999999999999999975 8872 33321100 000112
Q ss_pred EEcCCccc------CCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 010314 186 FVERETTL------IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA 259 (513)
Q Consensus 186 yv~Q~~~l------~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA 259 (513)
+.+|.... .+..++.+++... . ....++++++++.+||.+..++.++ +|||||||||+||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~~----~----~~~~~~~~~~l~~~gl~~~~~~~~~------~LSgGe~Qrv~iA 233 (608)
T 3j16_B 168 IKPQYVDNIPRAIKGPVQKVGELLKLR----M----EKSPEDVKRYIKILQLENVLKRDIE------KLSGGELQRFAIG 233 (608)
T ss_dssp EECCCTTTHHHHCSSSSSHHHHHHHHH----C----CSCHHHHHHHHHHHTCTGGGGSCTT------TCCHHHHHHHHHH
T ss_pred hchhhhhhhhhhhcchhhHHHHHHhhh----h----hhHHHHHHHHHHHcCCcchhCCChH------HCCHHHHHHHHHH
Confidence 33332111 1123555554321 1 1233568899999999988887554 9999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEE
Q 010314 260 RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 260 raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
|||+.+|+||||||||+|||+.++..++++|++++++|.|||+++|+. .++..+||+|++|++|..++
T Consensus 234 raL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCSEEEEEESCTTTE
T ss_pred HHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcccc
Confidence 999999999999999999999999999999999988899999987765 68999999999999876544
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.98 E-value=6.5e-33 Score=301.50 Aligned_cols=172 Identities=18% Similarity=0.195 Sum_probs=136.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEE-----------EECCEeCC-------CCCceEEEEcCC----c
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV-----------FVNGAKSE-------MPYGSYGFVERE----T 191 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I-----------~i~G~~~~-------~~~~~~~yv~Q~----~ 191 (513)
++||++||+||||||||||+|+|+|+++|+. |+| .++|.+.. .....+..+.|. +
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~---G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNF---GDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCCT---TCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---CccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 3899999999999999999999999999975 888 56665421 011123334433 3
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q 010314 192 TLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFI 271 (513)
Q Consensus 192 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLll 271 (513)
.++ ..||.+++... ...++++++++.+++.+..++.++ +|||||||||+|||||+.+|+||||
T Consensus 100 ~~~-~~~v~~~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~------~LSgGe~Qrv~iA~aL~~~p~illl 162 (538)
T 3ozx_A 100 KFL-KGTVNEILTKI----------DERGKKDEVKELLNMTNLWNKDAN------ILSGGGLQRLLVAASLLREADVYIF 162 (538)
T ss_dssp TTC-CSBHHHHHHHH----------CCSSCHHHHHHHTTCGGGTTSBGG------GCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred hhc-cCcHHHHhhcc----------hhHHHHHHHHHHcCCchhhcCChh------hCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 333 34788766321 112346789999999988887654 9999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEE
Q 010314 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTL 327 (513)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv 327 (513)
||||++||+.++..++++|+++++ |+|||+++|+. .++..+||+|++|++|..+
T Consensus 163 DEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 163 DQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDL-IVLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCH-HHHHHHCSEEEEEEEETTT
T ss_pred ECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh-HHHHhhCCEEEEecCCccc
Confidence 999999999999999999999976 89999988775 6889999999999876543
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=5.3e-31 Score=298.43 Aligned_cols=209 Identities=20% Similarity=0.229 Sum_probs=157.0
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHH-cCC---------CCCC--Ccee---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-GRL---------PHSA--RMYG--- 168 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~-G~~---------~~~~--~~~G--- 168 (513)
..++++|++. ..|+|||+.|++|+++||+|+||||||||+++|+ |.+ .++. .+.|
T Consensus 628 ~~L~v~~l~~----------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~ 697 (972)
T 2r6f_A 628 RWLEVVGARE----------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH 697 (972)
T ss_dssp CEEEEEEECS----------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGG
T ss_pred eEEEEecCcc----------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccc
Confidence 4688888752 3699999999999999999999999999999854 211 2221 1234
Q ss_pred ---EEEECCEeCCC-C-----------------------CceEEEEcCCcccC----------------------C----
Q 010314 169 ---EVFVNGAKSEM-P-----------------------YGSYGFVERETTLI----------------------G---- 195 (513)
Q Consensus 169 ---~I~i~G~~~~~-~-----------------------~~~~~yv~Q~~~l~----------------------~---- 195 (513)
.|.++|.++.. . .+..||++|...+. +
T Consensus 698 ~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~ 777 (972)
T 2r6f_A 698 LDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYV 777 (972)
T ss_dssp CSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEE
T ss_pred cceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccc
Confidence 57888765421 0 01245666543221 1
Q ss_pred ----------------------------CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCC
Q 010314 196 ----------------------------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMK 246 (513)
Q Consensus 196 ----------------------------~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~ 246 (513)
.+||.|++.|.. .. ....++.++|+.+||.. ..++. +.
T Consensus 778 ~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~--~~-----~~~~~~~~~L~~~gL~~~~l~~~------~~ 844 (972)
T 2r6f_A 778 PCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA--SI-----PKIKRKLETLYDVGLGYMKLGQP------AT 844 (972)
T ss_dssp ECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC--SC-----HHHHHHHHHHHHTTCSSSBTTCC------GG
T ss_pred cccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh--cc-----hhHHHHHHHHHHcCCCcccccCc------hh
Confidence 357777775421 11 11234578999999976 45554 45
Q ss_pred CCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE--
Q 010314 247 GLPCGERRRVRIARELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL-- 321 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~~P---~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL-- 321 (513)
.|||||||||+||++|+.+| +||||||||+|||+.++..++++|++++++|.|||+++|+. +.+ ..||+|++|
T Consensus 845 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~p 922 (972)
T 2r6f_A 845 TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL-DVI-KTADYIIDLGP 922 (972)
T ss_dssp GCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEECS
T ss_pred hCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEEcC
Confidence 99999999999999999865 99999999999999999999999999998899999988875 454 689999999
Q ss_pred ----eCCeEEEEeChHHHHH
Q 010314 322 ----SNGNTLFFGETLACLQ 337 (513)
Q Consensus 322 ----~~G~iv~~G~~~~~~~ 337 (513)
++|++++.|+++++..
T Consensus 923 ~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 923 EGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp SSTTSCCSEEEEESHHHHHT
T ss_pred CCCCCCCEEEEecCHHHHHh
Confidence 7899999999988753
No 61
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=7.3e-31 Score=296.55 Aligned_cols=213 Identities=21% Similarity=0.210 Sum_probs=155.2
Q ss_pred CceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHH-HHcCC-------CCC-----------
Q 010314 103 GASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRA-IAGRL-------PHS----------- 163 (513)
Q Consensus 103 ~~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~-L~G~~-------~~~----------- 163 (513)
...|+++|+++ ..|+|||+.|++|+++||+|+||||||||+++ |+|++ ++.
T Consensus 500 ~~~L~v~~l~~----------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~ 569 (842)
T 2vf7_A 500 AGWLELNGVTR----------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADH 569 (842)
T ss_dssp SCEEEEEEEEE----------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC---------------
T ss_pred CceEEEEeeee----------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccc
Confidence 35689999874 26999999999999999999999999999996 77553 220
Q ss_pred ----CCcee-------EEEECCEeCCCCCc----------------------------------------------eEEE
Q 010314 164 ----ARMYG-------EVFVNGAKSEMPYG----------------------------------------------SYGF 186 (513)
Q Consensus 164 ----~~~~G-------~I~i~G~~~~~~~~----------------------------------------------~~~y 186 (513)
....| .|.++|.++....+ ..|+
T Consensus 570 ~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~ 649 (842)
T 2vf7_A 570 TAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGW 649 (842)
T ss_dssp --CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSE
T ss_pred ccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCc
Confidence 01356 78888865421100 0111
Q ss_pred EcCCcccCC------------------------CCCHHHHHHHHH----HhcCCCchhhHHHHHHHHHHHcCChhH-Hhh
Q 010314 187 VERETTLIG------------------------SLTVREYLYYSA----LLQLPGFFCQRKNVVEDAIHAMSLSDY-ANK 237 (513)
Q Consensus 187 v~Q~~~l~~------------------------~lTV~E~l~~~~----~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~ 237 (513)
+..+..+++ ..++.|++.+.. .+ .... ...+++.++|+.+||... .++
T Consensus 650 ~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~-~~~~--~~~~~~~~~L~~~gL~~~~l~~ 726 (842)
T 2vf7_A 650 VMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDF-FADE--SAIFRALDTLREVGLGYLRLGQ 726 (842)
T ss_dssp EEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHH-TTTS--HHHHHHHHHHHHTTCTTSBTTC
T ss_pred cchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHH-hhcc--hHHHHHHHHHHHcCCCcccccC
Confidence 211111222 234444432110 00 1111 123467899999999763 344
Q ss_pred hhcCCCCCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhc
Q 010314 238 LIGGHCYMKGLPCGERRRVRIARELVMR---PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGL 314 (513)
Q Consensus 238 ~vg~~~~~~~LSGGqrqRv~IAraL~~~---P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (513)
. +..|||||||||+||++|+.+ |+||||||||+|||+.....++++|++++++|.|||+++|+. +++ ..
T Consensus 727 ~------~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl-~~i-~~ 798 (842)
T 2vf7_A 727 P------ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM-QVV-AA 798 (842)
T ss_dssp C------GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TT
T ss_pred C------cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-Hh
Confidence 3 459999999999999999996 799999999999999999999999999998899999988875 566 78
Q ss_pred CCEEEEE------eCCeEEEEeChHHHH
Q 010314 315 FDRICLL------SNGNTLFFGETLACL 336 (513)
Q Consensus 315 ~D~v~vL------~~G~iv~~G~~~~~~ 336 (513)
||+|++| ++|++++.|+++++.
T Consensus 799 aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 799 SDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred CCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 9999999 799999999998764
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=4.6e-30 Score=292.21 Aligned_cols=199 Identities=19% Similarity=0.228 Sum_probs=149.7
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHH---------HHHHcCCCCCC---Cce------eEEEECCEeCCC------
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLL---------RAIAGRLPHSA---RMY------GEVFVNGAKSEM------ 179 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl---------~~L~G~~~~~~---~~~------G~I~i~G~~~~~------ 179 (513)
..|+|||+.|++|++++|+|+||||||||+ +++.|...+.+ ... +.|.+++.+...
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 45555433221 012 234444332110
Q ss_pred ----------------------------------------CCceEEEEcCCcccCC------------------------
Q 010314 180 ----------------------------------------PYGSYGFVERETTLIG------------------------ 195 (513)
Q Consensus 180 ----------------------------------------~~~~~~yv~Q~~~l~~------------------------ 195 (513)
.....|++.++..++|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0012466766665554
Q ss_pred --------CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 010314 196 --------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRP 266 (513)
Q Consensus 196 --------~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P 266 (513)
.+||.|++.|... . ....++.++|+.+||... .++ .+..|||||||||+|||||+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~-----~--~~~~~~~~~L~~vGL~~~~lgq------~~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN-----I--PSIKRTLQVLHDVGLGYVKLGQ------PATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT-----C--HHHHHHHHHHHHTTGGGSBTTC------CSTTCCHHHHHHHHHHHHHTSCC
T ss_pred cCCHHHHhhCCHHHHHHHHhc-----c--hhHHHHHHHHHHcCCchhhccC------CccCCCHHHHHHHHHHHHHhhCC
Confidence 3677887765321 1 123457789999999753 233 45699999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHHH
Q 010314 267 ---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (513)
Q Consensus 267 ---~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (513)
+||||||||+|||+.++..+++.|++++++|.|||+++|+. +.+ ..||+|++| ++|++++.|+++++..
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL-~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL-DVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 79999999999999999999999999998899999988875 455 569999999 8999999999998753
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=5.9e-30 Score=290.82 Aligned_cols=209 Identities=20% Similarity=0.223 Sum_probs=152.8
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHH-c----CCC-----CCC--Ccee---
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-G----RLP-----HSA--RMYG--- 168 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~-G----~~~-----~~~--~~~G--- 168 (513)
..|+++|++. .+|+|||+.|++|+++||+|+||||||||+++|+ | .+. ++. .+.|
T Consensus 646 ~~L~v~~l~~----------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~ 715 (993)
T 2ygr_A 646 RQLTVVGARE----------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDY 715 (993)
T ss_dssp SEEEEEEECS----------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTT
T ss_pred ceEEEecCcc----------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccc
Confidence 4688888752 2699999999999999999999999999999853 2 221 110 0112
Q ss_pred ---EEEECCEeCCC-C-----------------------CceEEEEcCCccc----------------------CC----
Q 010314 169 ---EVFVNGAKSEM-P-----------------------YGSYGFVERETTL----------------------IG---- 195 (513)
Q Consensus 169 ---~I~i~G~~~~~-~-----------------------~~~~~yv~Q~~~l----------------------~~---- 195 (513)
.|.+++.++.. . .+..||++|...+ ++
T Consensus 716 ~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~ 795 (993)
T 2ygr_A 716 LDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYV 795 (993)
T ss_dssp CSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEE
T ss_pred cceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhcccccee
Confidence 24455543210 0 0123555553221 11
Q ss_pred ----------------------------CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCC
Q 010314 196 ----------------------------SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMK 246 (513)
Q Consensus 196 ----------------------------~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~ 246 (513)
.+||.|++.|.. .. ....++.++|+.+||.. ..++. +.
T Consensus 796 ~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~--~~-----~~~~~~~~~L~~lgL~~~~l~~~------~~ 862 (993)
T 2ygr_A 796 PCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFE--PI-----AGVHRYLRTLVDVGLGYVRLGQP------AP 862 (993)
T ss_dssp ECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHST--TC-----HHHHHHHHHHHHTTGGGSBTTCC------GG
T ss_pred eehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhh--cc-----hHHHHHHHHHHHcCCCcccccCc------cc
Confidence 246667665421 11 11234578899999976 45554 45
Q ss_pred CCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE--
Q 010314 247 GLPCGERRRVRIARELVMRP---HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL-- 321 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~~P---~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL-- 321 (513)
.|||||||||+||++|+.+| +||||||||+|||+.++..++++|+++++.|.|||+++|+. +.+ ..||+|++|
T Consensus 863 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl-~~i-~~aDrIivL~p 940 (993)
T 2ygr_A 863 TLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNL-DVI-KTSDWIIDLGP 940 (993)
T ss_dssp GSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHH-TTCSEEEEEES
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH-HHH-HhCCEEEEECC
Confidence 99999999999999999865 99999999999999999999999999988899999988875 454 689999999
Q ss_pred ----eCCeEEEEeChHHHHH
Q 010314 322 ----SNGNTLFFGETLACLQ 337 (513)
Q Consensus 322 ----~~G~iv~~G~~~~~~~ 337 (513)
++|++++.|+++++..
T Consensus 941 ~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 941 EGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp SSTTSCSEEEEEECHHHHHH
T ss_pred CcCCCCCEEEEecCHHHHHh
Confidence 6899999999988754
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.6e-32 Score=293.06 Aligned_cols=185 Identities=13% Similarity=0.120 Sum_probs=146.1
Q ss_pred eeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee-E-EEECCEeCCCCCceEEEEcCCcc---cCCCCCHHH
Q 010314 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-E-VFVNGAKSEMPYGSYGFVERETT---LIGSLTVRE 201 (513)
Q Consensus 127 ~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G-~-I~i~G~~~~~~~~~~~yv~Q~~~---l~~~lTV~E 201 (513)
.++|+.+++|++++|+||||||||||+|+|+|+.+++ +| + |.++|. ..+.++|++|+.. +.+.+||+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~----~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD----PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC----TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC----ccCCeeeeccchhhcccccccchhh
Confidence 3799999999999999999999999999999999886 49 8 999983 2456899999984 345679999
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC-C
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE--LVMRPHV----LFIDE-P 274 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra--L~~~P~i----LllDE-P 274 (513)
|+ |+....... ...+++.++++.+|+.+..+ + .+|||||||||+|||+ |+.+|++ ||||| |
T Consensus 202 ni-~~~~~~~~~---~~~~~~~~ll~~~gl~~~~~--~------~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP 269 (460)
T 2npi_A 202 PT-WGQSLTSGA---TLLHNKQPMVKNFGLERINE--N------KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS 269 (460)
T ss_dssp TT-CSCBCBSSC---CSSCCBCCEECCCCSSSGGG--C------HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred hh-cccccccCc---chHHHHHHHHHHhCCCcccc--h------hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence 88 542211111 11223556778888876654 2 4899999999999999 9999999 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCCh--H---HHHhcCCE-----EEEEe-CCeEEEEeChHHH
Q 010314 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS--T---EVFGLFDR-----ICLLS-NGNTLFFGETLAC 335 (513)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~--~---~i~~~~D~-----v~vL~-~G~iv~~G~~~~~ 335 (513)
|++||+. ...+.+++++ .+.|+|+++|+.. - ++..+||+ |++|+ +|+++ .|+++++
T Consensus 270 ts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 270 ISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp GGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred ccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 9999999 4444444443 3778888888864 1 56789999 99999 99999 8988765
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=9.6e-29 Score=260.01 Aligned_cols=202 Identities=13% Similarity=0.079 Sum_probs=141.7
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----------------------------------CCcee
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS-----------------------------------ARMYG 168 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~-----------------------------------~~~~G 168 (513)
.+++++++.+.+| +++|+|||||||||||++|+++.... ..-.|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3789999999999 99999999999999999998876521 01148
Q ss_pred EEEECCEeCCC------CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCC-----------------------Cc-----
Q 010314 169 EVFVNGAKSEM------PYGSYGFVERETTLIGSLTVREYLYYSALLQLP-----------------------GF----- 214 (513)
Q Consensus 169 ~I~i~G~~~~~------~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-----------------------~~----- 214 (513)
++++||++... ....+++++|++.++.. +..+...|.-..... ..
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 89999987532 11237999998766533 444433322110000 00
Q ss_pred -------------------------------hhhHHHHHHHHHHHcCChhHH----------------hh---hhcCC--
Q 010314 215 -------------------------------FCQRKNVVEDAIHAMSLSDYA----------------NK---LIGGH-- 242 (513)
Q Consensus 215 -------------------------------~~~~~~~v~~~l~~~~L~~~~----------------~~---~vg~~-- 242 (513)
.......+.+.++.+++.... ++ .+..+
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000112344445555543210 00 01000
Q ss_pred ---CCCCC-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCC
Q 010314 243 ---CYMKG-LPCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (513)
Q Consensus 243 ---~~~~~-LSGGqrqRv~IAraL~~~P--~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (513)
..+.. |||||||||+||++|+.+| +||||||||+|||+.++..|.+.|++++ +|.|||+++|++ ++...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 01112 7999999999999999999 9999999999999999999999999998 689999988885 4567899
Q ss_pred EEEEE----eCCeEEEEe
Q 010314 317 RICLL----SNGNTLFFG 330 (513)
Q Consensus 317 ~v~vL----~~G~iv~~G 330 (513)
++++| ++|+++...
T Consensus 364 ~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeccCCceEEEE
Confidence 99999 999987654
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=1.1e-25 Score=234.01 Aligned_cols=83 Identities=25% Similarity=0.346 Sum_probs=76.0
Q ss_pred CCCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCE
Q 010314 244 YMKGLPCGERRRVRIARELV------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL~------~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (513)
++.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++++.|.|||+++|+. . ....||+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~-~-~~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDR-E-FSEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCH-H-HHTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecch-H-HHHhCCE
Confidence 56689999999999999999 69999999999999999999999999999988899999988886 3 3778999
Q ss_pred EEEEeCCeEEE
Q 010314 318 ICLLSNGNTLF 328 (513)
Q Consensus 318 v~vL~~G~iv~ 328 (513)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.92 E-value=6.7e-29 Score=238.60 Aligned_cols=141 Identities=20% Similarity=0.202 Sum_probs=97.5
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC--EeCCCCCceEEEEcCCcccCCCCCH
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG--AKSEMPYGSYGFVERETTLIGSLTV 199 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G--~~~~~~~~~~~yv~Q~~~l~~~lTV 199 (513)
.+.+|+|+ ++|++++|+||||||||||+++|+|+ +|++ |+|.... .+.....+.++|++|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~---G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQS---KQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHT---TSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcC---CeeeeEEecCCchhhhcceEEecCCH--------
Confidence 34688886 89999999999999999999999999 8864 7773211 11112235689999975
Q ss_pred HHHH-HHHH----HhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 010314 200 REYL-YYSA----LLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (513)
Q Consensus 200 ~E~l-~~~~----~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEP 274 (513)
+||+ .+.. .+... ...+.++++++. +| ||||||+|||||+.+|+|||||||
T Consensus 76 ~enl~~~~~~~~~~~~~~----~~~~~~~~~l~~------------------gl--Gq~qrv~lAraL~~~p~lllLDEP 131 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDM----VEPEVIPKLMEA------------------GI--VEVAPLAYMRGRTLNDAFVILDEA 131 (208)
T ss_dssp ----CTTTHHHHHHHTTT----SCTTHHHHHHHT------------------TS--EEEEEGGGGTTCCBCSEEEEECSG
T ss_pred HHHHHHHHHHHHHHHHHh----ccHHHHHHHHHh------------------CC--chHHHHHHHHHHhcCCCEEEEeCC
Confidence 4444 2210 01000 011223333332 22 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCCh
Q 010314 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
|+| ++..++++|+++ ++|+||| ++|+..
T Consensus 132 ts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 132 QNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred ccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 999 889999999998 6688999 889863
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=3.2e-25 Score=226.44 Aligned_cols=88 Identities=19% Similarity=0.140 Sum_probs=73.0
Q ss_pred CCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEE-
Q 010314 244 YMKGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI- 318 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL~----~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v- 318 (513)
.+..|||||||||+||++|+ .+|+||||||||++||+..+..+++.|+++. +|.+||+++|++ ++..+||++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~~~ 292 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADLLH 292 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCceEE
Confidence 45689999999999999997 5789999999999999999999999999985 578999988885 467899987
Q ss_pred -EEEeCCeE-EEEeChHH
Q 010314 319 -CLLSNGNT-LFFGETLA 334 (513)
Q Consensus 319 -~vL~~G~i-v~~G~~~~ 334 (513)
++|.+|.. +.....++
T Consensus 293 ~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 293 GVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEEESSSCEEEEECCC--
T ss_pred EEEEeCCEEEEEEEEcch
Confidence 78887764 33344433
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.92 E-value=1.2e-26 Score=215.48 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=99.3
Q ss_pred eeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccC-CCCCHHHHHHHH
Q 010314 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI-GSLTVREYLYYS 206 (513)
Q Consensus 128 ~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~-~~lTV~E~l~~~ 206 (513)
||||.+++||+++|+||||||||||++++.+ |...+++. ...++++|++.-. ..-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~---------~~~~~~~d------~~~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK---------PTEVISSD------FCRGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC---------GGGEEEHH------HHHHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc---------CCeEEccH------HHHHHhcCcccchhhHHHHHHHHH--
Confidence 6899999999999999999999999998653 21112111 0124555543210 0001111111
Q ss_pred HHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----
Q 010314 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV----- 281 (513)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~----- 281 (513)
. ..+.....+.....+. ....||||||||+|||+|+.+|++|+|||||++||+.
T Consensus 64 -------------~-~~~~~~~~g~~~~~~~-------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 -------------Y-IVSKRLQLGKLTVVDA-------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp -------------H-HHHHHHHTTCCEEEES-------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred -------------H-HHHHHHhCCCeEEEEC-------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 1111222344333332 2356999999999999999999999999999999999
Q ss_pred -----------HHHHHHHHHHHHHHcCCeEEEEEeCChHHHH
Q 010314 282 -----------SALLMMVTLKKLASTGCTLLFTINQSSTEVF 312 (513)
Q Consensus 282 -----------~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~ 312 (513)
.+..+++.|++++++|.|+|+++|+. +++.
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~-~~~~ 163 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP-EEVE 163 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH-HHHH
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH-HHhh
Confidence 56899999999987799999988876 4554
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.90 E-value=1.7e-27 Score=250.36 Aligned_cols=177 Identities=12% Similarity=0.140 Sum_probs=137.2
Q ss_pred cceeeeeeeeEEeCCc--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC
Q 010314 122 SDKVVKSSNGYALPGT--------------------MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY 181 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge--------------------~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~ 181 (513)
.+.+|++||+.+++|+ ++||+||||||||||+|+|+|+.+|+. |+|.++|.+.. +
T Consensus 35 ~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~---GsI~~~g~~~t--~ 109 (413)
T 1tq4_A 35 SQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEE---GAAKTGVVEVT--M 109 (413)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTST---TSCCCCC------C
T ss_pred CHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccC---ceEEECCeecc--e
Confidence 4568999999999999 999999999999999999999999875 99999987542 1
Q ss_pred ceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH--HHHHHHHH
Q 010314 182 GSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG--ERRRVRIA 259 (513)
Q Consensus 182 ~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG--qrqRv~IA 259 (513)
.+|++|++ .++.+|+.|++.+.. + +..++++++.+++.+.. . .+ .|||| |+||+.||
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~~~----~------~~~~~~~L~~~~L~~~~-~------~~-~lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGIGS----T------NFPPDTYLEKMKFYEYD-F------FI-IISATRFKKNDIDIA 168 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCGGG----S------SCCHHHHHHHTTGGGCS-E------EE-EEESSCCCHHHHHHH
T ss_pred --eEEecccc-ccCCeeehHhhcccc----h------HHHHHHHHHHcCCCccC-C------eE-EeCCCCccHHHHHHH
Confidence 27888875 567889888764321 1 13467889999987542 2 12 39999 99999999
Q ss_pred HHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HcC----CeEEEEEeCChH-HHHhcCCEEE
Q 010314 260 RELVM----------RPHVLFIDEPLYHLDSVSALLMMVTLKKLA-----STG----CTLLFTINQSST-EVFGLFDRIC 319 (513)
Q Consensus 260 raL~~----------~P~iLllDEPTsgLD~~~~~~i~~~L~~l~-----~~g----~tvi~t~h~~~~-~i~~~~D~v~ 319 (513)
++|+. +|++++|||||+|||+..+.++++.|+++. +.| .+|++++|.... .+.++||++.
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999 999999999999999999999999999985 323 456676665431 2777787774
Q ss_pred -EEeCC
Q 010314 320 -LLSNG 324 (513)
Q Consensus 320 -vL~~G 324 (513)
.|..|
T Consensus 249 ~~Lpeg 254 (413)
T 1tq4_A 249 SDLPIY 254 (413)
T ss_dssp HHSCGG
T ss_pred HhCccc
Confidence 34333
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.90 E-value=1.9e-25 Score=209.35 Aligned_cols=147 Identities=18% Similarity=0.131 Sum_probs=102.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC--CCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCch
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE--MPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~--~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 215 (513)
.++|+||||||||||+++|+|++.. ...|... .... ...+.++|++|+. ++.+++ + .....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~---~~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F---SSKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEE---EEEC------CCEEEEEET------TCCEEE-E---EETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H---HhhcC--
Confidence 5899999999999999999999742 1233221 1111 2235689999975 222222 0 00000
Q ss_pred hhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHHH
Q 010314 216 CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARE-----LVMRPHVLFIDE--PLYHLDSVSALLMMV 288 (513)
Q Consensus 216 ~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAra-----L~~~P~iLllDE--PTsgLD~~~~~~i~~ 288 (513)
.-.+..+ .++..||||||||++||++ |+.+|++||||| ||++||+..+..+.+
T Consensus 65 --------------~~~~~~~------~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 65 --------------TSKKLVG------SYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp --------------CCSSEET------TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred --------------Ccccccc------ccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 0001222 2455899999999999996 999999999999 999999999999988
Q ss_pred HHHHHHHcCCeEEEEEe--CChHHHHhcCCEEEEEeCCeEEE
Q 010314 289 TLKKLASTGCTLLFTIN--QSSTEVFGLFDRICLLSNGNTLF 328 (513)
Q Consensus 289 ~L~~l~~~g~tvi~t~h--~~~~~i~~~~D~v~vL~~G~iv~ 328 (513)
.|++ .+.|+|+++| |+...+..+||+ .+|+++.
T Consensus 125 ~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 125 IMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 8865 4677888887 677788889998 4566654
No 72
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.89 E-value=6.8e-25 Score=222.18 Aligned_cols=172 Identities=14% Similarity=0.079 Sum_probs=134.0
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CceEEEEcCCcc-c
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETT-L 193 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~-l 193 (513)
+.++|+.+++|++++|+||||||||||+++|+|++++.+ |+|.++|.+.... ...++|++|++. +
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~---g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG---TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 357888899999999999999999999999999998865 9999999764321 135899999988 8
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEE
Q 010314 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFI 271 (513)
Q Consensus 194 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~--iLll 271 (513)
+|.+||+|++.++.... . . ..+++.+|+.+..+++++ +|| |||++|||+|+.+|+ +|+|
T Consensus 167 ~~~~~v~e~l~~~~~~~--~---d-----~~lldt~gl~~~~~~~~~------eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEEG--Y---D-----VVLCDTSGRLHTNYSLME------ELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp CHHHHHHHHHHHHHHTT--C---S-----EEEECCCCCSSCCHHHHH------HHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHcC--C---c-----chHHhcCCCCcchhHHHH------HHH---HHHHHHHHhhccCCCeeEEEE
Confidence 89999999998754211 0 0 124567788776666554 899 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCCh--------HHHHhcCCEEEEEeCCeE
Q 010314 272 DEPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSS--------TEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~--------~~i~~~~D~v~vL~~G~i 326 (513)
| ||+|||+..+ ++++.+ .|.|+|++||.+. ..+....+.|.++..|+.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9 9999998865 345553 5899999888432 344556778899988864
No 73
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.89 E-value=3.5e-27 Score=225.54 Aligned_cols=177 Identities=12% Similarity=0.091 Sum_probs=120.4
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CCCCceEEEEcCCcccCCCCCHHH
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
..+++| ..+++|++++|+||||||||||+|+|+|+++. +.+.+.+.+.+. ....+.++|++|++.+|+.+|+.+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcC
Confidence 346777 68899999999999999999999999999862 223332222221 112356899999988888888877
Q ss_pred HHHHHHHh----cC-CCchhhHHHHHHHH------HHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEE
Q 010314 202 YLYYSALL----QL-PGFFCQRKNVVEDA------IHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLF 270 (513)
Q Consensus 202 ~l~~~~~~----~~-~~~~~~~~~~v~~~------l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLl 270 (513)
++.+.... .. .....+.++++++. ++.+|+.+..++. ++.|| +|+.+|++++
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~------~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM------PEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC------TTSEE-----------EEEECSCHHH
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc------CCcEE-----------EEEECCCHHH
Confidence 76321000 00 01112233445554 5666776666664 44888 9999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 271 IDEPLYHL----DSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 271 lDEPTsgL----D~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
|||||+|| |+..+.++.++++++++ .|.|+|+++|+. +++..+||+|++|.
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 99999998 78899999999999975 589999987765 68999999999984
No 74
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.88 E-value=3.5e-27 Score=238.64 Aligned_cols=169 Identities=12% Similarity=0.114 Sum_probs=127.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.|+++||++.|. ..+|+++|+.|++|++++|+||||||||||+++|+|++ . |+|.
T Consensus 101 ~i~~~~vs~~y~------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~---G~I~------------- 155 (305)
T 2v9p_A 101 FFNYQNIELITF------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---G---GSVL------------- 155 (305)
T ss_dssp HHHHTTCCHHHH------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---T---CEEE-------------
T ss_pred eEEEEEEEEEcC------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---C---ceEE-------------
Confidence 377888988773 36999999999999999999999999999999999998 2 8883
Q ss_pred EEEcCCcccCCCCCHHH-HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 010314 185 GFVERETTLIGSLTVRE-YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV 263 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E-~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~ 263 (513)
+|++|++.++.. |+++ |+.+. +.. ...+.+.++.+ |.+..+ +..|||||||| ||||+
T Consensus 156 ~~v~q~~~lf~~-ti~~~ni~~~-----~~~----~~~~~~~i~~~-L~~gld--------g~~LSgGqkQR---ARAll 213 (305)
T 2v9p_A 156 SFANHKSHFWLA-SLADTRAALV-----DDA----THACWRYFDTY-LRNALD--------GYPVSIDRKHK---AAVQI 213 (305)
T ss_dssp CGGGTTSGGGGG-GGTTCSCEEE-----EEE----CHHHHHHHHHT-TTGGGG--------TCCEECCCSSC---CCCEE
T ss_pred EEecCccccccc-cHHHHhhccC-----ccc----cHHHHHHHHHH-hHccCC--------ccCcCHHHHHH---HHHHh
Confidence 467888877764 7776 76442 110 11344555553 333222 34899999999 99999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHhHh
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHFSN 341 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~ 341 (513)
.+|+||| ||+||+.++..+..+ +|+. .....||+| +|++|++++.|+.+++...|..
T Consensus 214 ~~p~iLl----Ts~LD~~~~~~i~~l--------------tH~~--~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~ 270 (305)
T 2v9p_A 214 KAPPLLV----TSNIDVQAEDRYLYL--------------HSRV--QTFRFEQPC-TDESGEQPFNITDADWKSFFVR 270 (305)
T ss_dssp CCCCEEE----EESSCSTTCGGGGGG--------------TTTE--EEEECCCCC-CCC---CCCCCCHHHHHHHHHH
T ss_pred CCCCEEE----ECCCCHHHHHHHHHH--------------hCCH--HHHHhCCEE-EEeCCEEEEeCCHHHHHHHHHH
Confidence 9999999 999999998887621 4543 346789999 9999999999999887444443
No 75
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.87 E-value=1.4e-23 Score=216.96 Aligned_cols=171 Identities=14% Similarity=0.080 Sum_probs=134.7
Q ss_pred eeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CceEEEEcCCcc-cC
Q 010314 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETT-LI 194 (513)
Q Consensus 127 ~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~-l~ 194 (513)
..+|+.+++|++++|+||||||||||+++|+|++++.+ |+|.++|.+.... +..++|++|++. ++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~---G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG---TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccC---CEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 46888899999999999999999999999999998764 9999999764321 135899999988 88
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEe
Q 010314 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFID 272 (513)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~--iLllD 272 (513)
|.+|++|++.++.... . . ..+++.+|+.+..++++. +|| |||++|||+|+.+|+ +|+||
T Consensus 225 p~~tv~e~l~~~~~~~--~---d-----~~lldt~Gl~~~~~~~~~------eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 225 AATVLSKAVKRGKEEG--Y---D-----VVLCDTSGRLHTNYSLME------ELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHHTT--C---S-----EEEEECCCCSSCCHHHHH------HHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhhHHHHHHHHHhCC--C---H-----HHHHHhcCCChhhhhHHH------HHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 8999999998764211 0 0 124566788776666554 899 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCC--------hHHHHhcCCEEEEEeCCeE
Q 010314 273 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQS--------STEVFGLFDRICLLSNGNT 326 (513)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~--------~~~i~~~~D~v~vL~~G~i 326 (513)
||+|||+..+. +.+.+ .|.|+|++||.+ ...+....+.|.++..|+.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99999988653 45553 489999988843 2344556778888888864
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.86 E-value=5.5e-24 Score=212.24 Aligned_cols=145 Identities=17% Similarity=0.193 Sum_probs=97.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC--CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCch
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM--PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 215 (513)
.++|+||||||||||+|+|+|+.+|+. |+|.++|.+... ..+.++|++|++.+++.+||.||+.|+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~---G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~---- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRK---ASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN---- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCC---CccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc----
Confidence 479999999999999999999998874 999999976532 23579999999999999999999977542221
Q ss_pred hhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 010314 216 CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS 295 (513)
Q Consensus 216 ~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~ 295 (513)
....+.+.+.++ ..+.+.+.. +|||||||||+||||++. ++|+|||+.|||+.. .+.++.+.+
T Consensus 77 ~~~~~~i~~~~~----~~~~~~~~~------~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 77 ENCWEPIEKYIN----EQYEKFLKE------EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp TTCSHHHHHHHH----HHHHHHHHH------HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred HHHHHHHHHHHH----HHHHhhhHH------hcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 111123333333 455666554 899999999999999886 999999999999987 556666665
Q ss_pred cCCeEEEEEeCC
Q 010314 296 TGCTLLFTINQS 307 (513)
Q Consensus 296 ~g~tvi~t~h~~ 307 (513)
. .+||+++|..
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 7888888764
No 77
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.85 E-value=4.7e-21 Score=198.22 Aligned_cols=84 Identities=13% Similarity=0.010 Sum_probs=73.8
Q ss_pred CCC-CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHh
Q 010314 244 YMK-GLPCGERRRVRIARELV---------MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFG 313 (513)
Q Consensus 244 ~~~-~LSGGqrqRv~IAraL~---------~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~ 313 (513)
.++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|+++| +. .
T Consensus 261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th-~~-~--- 332 (359)
T 2o5v_A 261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE-LA-P--- 332 (359)
T ss_dssp EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS-CC-T---
T ss_pred chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe-cc-c---
Confidence 345 69999999999999999 8999999999999999999999999998874 57777666 42 3
Q ss_pred cCCEEEEEeCCeEEEEeChHHH
Q 010314 314 LFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 314 ~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
.||++++|++|+++..|+++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999988754
No 78
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.84 E-value=2.8e-24 Score=228.14 Aligned_cols=190 Identities=11% Similarity=0.027 Sum_probs=148.1
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE---eCCC-
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA---KSEM- 179 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~---~~~~- 179 (513)
..++++++++.|.. +..+|+++ +.+.+|++++|+||||||||||+++|+|+.+++ .|.|.++|+ +...
T Consensus 130 ~~l~~~~v~~~~~t----g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT----GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDF 201 (438)
T ss_dssp CTTTSCCCCSBCCC----SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHH
T ss_pred CceEEeccceecCC----CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHH
Confidence 35788888887741 35699999 999999999999999999999999999999887 499999997 3211
Q ss_pred ---------CCceEEEEcCC-cccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCC
Q 010314 180 ---------PYGSYGFVERE-TTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLP 249 (513)
Q Consensus 180 ---------~~~~~~yv~Q~-~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LS 249 (513)
..+.++|++|+ ..+++.+||.+|+.+.+...... .+ ....+.+. +..||
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-----~~---------~v~~~ld~-------l~~lS 260 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-----GQ---------HVLLIMDS-------LTRYA 260 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-----TC---------EEEEEEEC-------HHHHH
T ss_pred HHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-----CC---------CHHHHHHh-------HHHHH
Confidence 12568999995 56677889999997755321000 00 00111121 23789
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---c-CC-----eEEEEEeCChHHHHhcCCEEEE
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS---T-GC-----TLLFTINQSSTEVFGLFDRICL 320 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~---~-g~-----tvi~t~h~~~~~i~~~~D~v~v 320 (513)
+|| |||+|| +.+|++ |+|||+.....+.+++.++.+ + |. ||++++|+.. ..+||++++
T Consensus 261 ~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~ 327 (438)
T 2dpy_A 261 MAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARA 327 (438)
T ss_dssp HHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHH
T ss_pred HHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEE
Confidence 999 999999 889988 999999999999999999875 3 64 8888778764 567999999
Q ss_pred EeCCeEEEEeChHHH
Q 010314 321 LSNGNTLFFGETLAC 335 (513)
Q Consensus 321 L~~G~iv~~G~~~~~ 335 (513)
|.+|+++..|++.+.
T Consensus 328 l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 328 ILDGHIVLSRRLAEA 342 (438)
T ss_dssp HSSEEEEECHHHHHT
T ss_pred EeCcEEEEeCCHHHc
Confidence 999999999887654
No 79
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.84 E-value=1.3e-22 Score=207.94 Aligned_cols=129 Identities=18% Similarity=0.157 Sum_probs=104.6
Q ss_pred eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC---CCceEEEEcCCcccCCCCCHHH
Q 010314 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 125 iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
+++++++.+++|++++|+||||||||||+++|+|+++|+. |.|.++|.+.-. ..+.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~---g~i~i~~~~e~~~~~~~~~i~~~~------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE---RIISIEDTEEIVFKHHKNYTQLFF------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTS---CEEEEESSCCCCCSSCSSEEEEEC-------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCC---cEEEECCeeccccccchhEEEEEe-------------
Confidence 7899999999999999999999999999999999999874 999998853100 001111111
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~ 281 (513)
+ |||+||++||+||..+|++|++||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 282 SALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 282 ~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
.++.+.|+.+...+.|+|+++|... +...|||+++|.+|+
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 2456778777644457899899874 678899999998875
No 80
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.84 E-value=1.5e-25 Score=216.44 Aligned_cols=171 Identities=12% Similarity=0.115 Sum_probs=109.1
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------CCceEEEEcCCcccCCCC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------PYGSYGFVERETTLIGSL 197 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------~~~~~~yv~Q~~~l~~~l 197 (513)
.-|+||||.+++|++++|+||||||||||+++|+|++ | |+|.+ |.+... ....++|++|++.+|+.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 3699999999999999999999999999999999987 4 77888 654211 134688999987766543
Q ss_pred C-HHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH-----HHHHhhCCCEEEE
Q 010314 198 T-VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI-----ARELVMRPHVLFI 271 (513)
Q Consensus 198 T-V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I-----AraL~~~P~iLll 271 (513)
+ +.+++.+. .+. ..........++++++...+. ..+ ..|||||+||++| |++|+.+|++++|
T Consensus 84 ~~~~~~l~~~-~~~-~~~~g~~~~~i~~~l~~~~~~-il~---------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 84 LKNEDFLEYD-NYA-NNFYGTLKSEYDKAKEQNKIC-LFE---------MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp HHTTCEEEEE-EET-TEEEEEEHHHHHHHHHTTCEE-EEE---------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred hhccchhhhh-hcc-cccCCCcHHHHHHHHhCCCcE-EEE---------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 2 11111100 000 000011123466666654321 111 3799999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 272 DEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
||||+++|..+...+.+.|.++.++ .+ .+| ...||.|+++++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~-~~---~~h------~~~~d~iiv~~~ 193 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIE-LH---EAN------LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHH-HH---HHT------TSCCSEEEECSS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHH-HH---hhc------ccCCCEEEECCC
Confidence 9999999999999999999887542 23 123 145777776653
No 81
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.84 E-value=4e-20 Score=190.02 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=69.3
Q ss_pred CCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCE
Q 010314 244 YMKGLPCGERR------RVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (513)
Q Consensus 244 ~~~~LSGGqrq------Rv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (513)
.+..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.+.|.|||+++|++ ++...||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCCE
Confidence 45789999999 67778888889999999999999999999999999999987788999988884 57889999
Q ss_pred EEEEe
Q 010314 318 ICLLS 322 (513)
Q Consensus 318 v~vL~ 322 (513)
+++|.
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99985
No 82
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.83 E-value=3.5e-21 Score=219.43 Aligned_cols=162 Identities=22% Similarity=0.235 Sum_probs=124.4
Q ss_pred HHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCch-------hhHHHHHH
Q 010314 151 TLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF-------CQRKNVVE 223 (513)
Q Consensus 151 TLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~-------~~~~~~v~ 223 (513)
|+..|..+++.+.. |+|+++|+++. -+..+||.+++.|...+.+.... ........
T Consensus 383 ~C~~C~g~rl~~~~---~~V~i~G~~i~--------------~~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (916)
T 3pih_A 383 TCSVCGGRRLNREA---LSVKINGLNIH--------------EFTELSISEELEFLKNLNLTEREREIVGELLKEIEKRL 445 (916)
T ss_dssp ECTTTCSCCBCTTG---GGEEETTEEHH--------------HHHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHH
T ss_pred cchhcccccCChHh---cCcEECCccHH--------------HhhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHH
Confidence 34455556666654 89999987642 13457888988775444332211 01112345
Q ss_pred HHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE
Q 010314 224 DAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300 (513)
Q Consensus 224 ~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~--iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tv 300 (513)
+.|..+||... .++.+ .+|||||||||+|||+|+.+|+ ||||||||+|||+.....++++|++|++.|.||
T Consensus 446 ~~L~~vgL~~l~l~r~~------~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tv 519 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSA------TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTV 519 (916)
T ss_dssp HHHHTTTCTTCBTTSBG------GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEE
T ss_pred HHHHHcCCccccccCCc------ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 67788898764 45544 4999999999999999999887 999999999999999999999999998889999
Q ss_pred EEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHHH
Q 010314 301 LFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACLQ 337 (513)
Q Consensus 301 i~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~~ 337 (513)
|+++|+. +.+ ..||+|++| ++|++++.|+++++..
T Consensus 520 ivVtHd~-~~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 520 IVVEHDE-EVI-RNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp EEECCCH-HHH-HTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred EEEeCCH-HHH-HhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9988875 444 559999999 8999999999998754
No 83
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.82 E-value=8.7e-24 Score=215.01 Aligned_cols=145 Identities=10% Similarity=0.033 Sum_probs=110.7
Q ss_pred ceEEEEeEEEEEeccccccceeeeeeeeE-----------------------EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 104 ASVVWKDLTVTIKGKRRYSDKVVKSSNGY-----------------------ALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 104 ~~l~~~~ls~~~~~~~~~~~~iL~~vs~~-----------------------i~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
..+.++||++.|. ++++++++. +++|+++||+||||||||||+++|+|++
T Consensus 42 ~~i~~~~v~~~y~-------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 42 EQIDLLEVEEVYL-------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCCHHHHHHTHH-------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeehhhhhh-------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 4578888887762 345555543 7899999999999999999999999998
Q ss_pred CCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhc
Q 010314 161 PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIG 240 (513)
Q Consensus 161 ~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg 240 (513)
++.. |. ..++|++|++.+++. |+.||+.+......+. ....+.+.+.++.++ .+..+.
T Consensus 115 ~~~~---G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~~--~~d~~~~~~~L~~l~-~~~~~~--- 172 (312)
T 3aez_A 115 ARWD---HH------------PRVDLVTTDGFLYPN-AELQRRNLMHRKGFPE--SYNRRALMRFVTSVK-SGSDYA--- 172 (312)
T ss_dssp HTST---TC------------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTSGG--GBCHHHHHHHHHHHH-TTCSCE---
T ss_pred cccC---CC------------CeEEEEecCccCCcc-cHHHHHHHHHhcCCCh--HHHHHHHHHHHHHhC-CCcccC---
Confidence 8752 32 358999999999988 9999985421111111 223456777888776 433333
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010314 241 GHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (513)
Q Consensus 241 ~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~ 280 (513)
.+..|||||+||++||++++.+|+|||||||+..+|+
T Consensus 173 ---~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 173 ---CAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp ---EEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred ---CcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 3348999999999999999999999999999999986
No 84
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.82 E-value=8e-21 Score=206.26 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=119.3
Q ss_pred eeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHh
Q 010314 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALL 209 (513)
Q Consensus 130 s~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (513)
++.+.+|++++|+|+||||||||+++++|..++. |+ +.+.|++|++. ..+.++. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~------------~vi~~~~ee~~----~~l~~~~---~-- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE------------RAILFAYEESR----AQLLRNA---Y-- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC------------CEEEEESSSCH----HHHHHHH---H--
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC------------CEEEEEEeCCH----HHHHHHH---H--
Confidence 5689999999999999999999999999997764 32 12345566531 1222222 1
Q ss_pred cCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HHH
Q 010314 210 QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV-----SAL 284 (513)
Q Consensus 210 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~-----~~~ 284 (513)
+.... +++ +...|+..+.+. +|..|||||+||+++|+++..+|++||+| ||+|||.. .+.
T Consensus 330 ~~g~~-------~~~-~~~~g~~~~~~~------~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 330 SWGMD-------FEE-MERQNLLKIVCA------YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp TTSCC-------HHH-HHHTTSEEECCC------CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred HcCCC-------HHH-HHhCCCEEEEEe------ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 11111 112 234555554443 45689999999999999999999999999 99999999 999
Q ss_pred HHHHHHHHHHHcCCeEEEEEeCCh---------HHHHhcCCEEEEEeCCe
Q 010314 285 LMMVTLKKLASTGCTLLFTINQSS---------TEVFGLFDRICLLSNGN 325 (513)
Q Consensus 285 ~i~~~L~~l~~~g~tvi~t~h~~~---------~~i~~~~D~v~vL~~G~ 325 (513)
.+.++++.+++.|.|||+++|+.. ..+..+||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999999999888999999999861 35678999999999886
No 85
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.82 E-value=1.7e-21 Score=195.81 Aligned_cols=183 Identities=14% Similarity=0.063 Sum_probs=116.5
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeCCC--CCceEEEEcCCcccCCCCCH
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVFVNGAKSEM--PYGSYGFVERETTLIGSLTV 199 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G-~I~i~G~~~~~--~~~~~~yv~Q~~~l~~~lTV 199 (513)
..+|+++++.+++|++++|+||||||||||++.|+|...+.. | .|.+.+..... ..+++.++.+... +++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~---G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~ 94 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAM---GKKVGLAMLEESVEETAEDLIGLHNRVR----LRQ 94 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTS---CCCEEEEESSSCHHHHHHHHHHHHTTCC----GGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc---CCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhh
Confidence 458999999999999999999999999999999999987653 6 66543321110 0011222222211 122
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC--
Q 010314 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE-RRRVRIARELVMRPHVLFIDEPLY-- 276 (513)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGq-rqRv~IAraL~~~P~iLllDEPTs-- 276 (513)
.+++.... + ...+..+.++++++..++. .. ..+..+|.+| +||+. |+++..+|++||+||||+
T Consensus 95 ~~~l~~~~-~----~~~~~~~~~~~~l~~~~l~--i~------~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 95 SDSLKREI-I----ENGKFDQWFDELFGNDTFH--LY------DSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp CHHHHHHH-H----HHTHHHHHHHHHHSSSCEE--EE------CCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred ccccccCC-C----CHHHHHHHHHHHhccCCEE--EE------CCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 23332211 0 0011222333333322221 11 1234689998 66666 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHHc-CCeEEEEEeCC-hH--------------------HHHhcCCEEEEEeCCeE
Q 010314 277 -H---LDS-VSALLMMVTLKKLAST-GCTLLFTINQS-ST--------------------EVFGLFDRICLLSNGNT 326 (513)
Q Consensus 277 -g---LD~-~~~~~i~~~L~~l~~~-g~tvi~t~h~~-~~--------------------~i~~~~D~v~vL~~G~i 326 (513)
+ +|. .....+++.|++++++ |+|||+++|.. .. .+..+||+|++|++|+.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 565 6778899999999865 99999988885 23 67889999999998874
No 86
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.81 E-value=2.7e-20 Score=201.75 Aligned_cols=77 Identities=17% Similarity=0.190 Sum_probs=69.8
Q ss_pred CCCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE
Q 010314 245 MKGL-PCGERRRVRIARELVMRP--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (513)
Q Consensus 245 ~~~L-SGGqrqRv~IAraL~~~P--~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (513)
+..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |.|||+++|++ . +...||++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~-~-~~~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLA-Q-IAARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCH-H-HHHHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH-H-HHHhCCEEEEE
Confidence 4567 999999999999999999 99999999999999999999999999987 89999988885 3 45679999999
Q ss_pred eCC
Q 010314 322 SNG 324 (513)
Q Consensus 322 ~~G 324 (513)
++|
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 655
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.81 E-value=8.6e-23 Score=221.77 Aligned_cols=166 Identities=16% Similarity=0.135 Sum_probs=123.5
Q ss_pred cceeeeeeee-EEeCCcEEEEEcCCCCcHHHHHHH--HHcCCCCCCCceeEEEECCEeCCC----CCceEEEEcCCcccC
Q 010314 122 SDKVVKSSNG-YALPGTMTVIMGPAKSGKSTLLRA--IAGRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETTLI 194 (513)
Q Consensus 122 ~~~iL~~vs~-~i~~Ge~~aliGpsGsGKSTLl~~--L~G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~ 194 (513)
+..+|++|++ .+++|++++|+||||||||||+++ ++|+.+|+. |.|+++|.+... ..+.+||++|+....
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~---g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~ 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE---PGVFVTFEETPQDIIKNARSFGWDLAKLVDE 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCC---CEEEEESSSCHHHHHHHHGGGTCCHHHHHHT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCC---CEEEEEEeCCHHHHHHHHHHcCCChHHhhcc
Confidence 4569999999 999999999999999999999999 789988764 999999975311 124578888875432
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 010314 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (513)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEP 274 (513)
+. +.+ +..... ....++++.++|.+..++.+. .||||| |+++++|||
T Consensus 101 ~~------l~~---~~~~~~-----~~~~~~l~~~~l~~~~~~~~~------~LS~g~-------------~~~lilDe~ 147 (525)
T 1tf7_A 101 GK------LFI---LDASPD-----PEGQEVVGGFDLSALIERINY------AIQKYR-------------ARRVSIDSV 147 (525)
T ss_dssp TS------EEE---EECCCC-----SSCCSCCSSHHHHHHHHHHHH------HHHHHT-------------CSEEEEECS
T ss_pred Cc------EEE---EecCcc-----cchhhhhcccCHHHHHHHHHH------HHHHcC-------------CCEEEECCH
Confidence 11 100 111000 001223455566666666554 788875 779999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHH--------HHhcCCEEEEEeC
Q 010314 275 LY-----HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE--------VFGLFDRICLLSN 323 (513)
Q Consensus 275 Ts-----gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~--------i~~~~D~v~vL~~ 323 (513)
|+ +||+..+..++++++.+++.|+|||+++|+.... +..+||+|++|++
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 98 4699999999999999988899999999987532 3456999999998
No 88
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.81 E-value=2.9e-21 Score=223.19 Aligned_cols=173 Identities=19% Similarity=0.157 Sum_probs=120.7
Q ss_pred ceEEEEe-----EEEEEeccccccceeeeeeeeEEeC-------CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEE
Q 010314 104 ASVVWKD-----LTVTIKGKRRYSDKVVKSSNGYALP-------GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVF 171 (513)
Q Consensus 104 ~~l~~~~-----ls~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~ 171 (513)
..+.++| |++.|. ..+.+++|+++.+.+ |++++|+||||||||||||+| |++.+.
T Consensus 749 ~~l~i~~~rHP~l~~~~~----~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~-------- 815 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFF----GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM-------- 815 (1022)
T ss_dssp CCEEEEEECCCC----------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH--------
T ss_pred ceEEEEeccccEEEEEec----CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH--------
Confidence 3589999 888773 234699999999987 999999999999999999999 987531
Q ss_pred ECCEeCCCCCceEE-EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCH
Q 010314 172 VNGAKSEMPYGSYG-FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 172 i~G~~~~~~~~~~~-yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSG 250 (513)
.++| ||||+.. .+||.+++.. .+|+.+..... ...+|+
T Consensus 816 ----------aqiG~~Vpq~~~---~l~v~d~I~~----------------------rig~~d~~~~~------~stf~~ 854 (1022)
T 2o8b_B 816 ----------AQMGCYVPAEVC---RLTPIDRVFT----------------------RLGASDRIMSG------ESTFFV 854 (1022)
T ss_dssp ----------HTTTCCEESSEE---EECCCSBEEE----------------------ECC---------------CHHHH
T ss_pred ----------hheeEEeccCcC---CCCHHHHHHH----------------------HcCCHHHHhhc------hhhhHH
Confidence 2244 8888753 3455554410 12222222221 125677
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCEEEEEeCCeEE-
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSA-LLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDRICLLSNGNTL- 327 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~-~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv- 327 (513)
|+++ +++|++++.+|+++||||||+|+|+... ..++.+|+.++++ |.++|++||+. +.+..++|++.++ +|++.
T Consensus 855 em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~ 931 (1022)
T 2o8b_B 855 ELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LGHMAC 931 (1022)
T ss_dssp HHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EEEEEE
T ss_pred HHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cCeEEE
Confidence 7664 9999999999999999999999999884 5578999999876 89999988876 5777889999887 48887
Q ss_pred -EEeChH
Q 010314 328 -FFGETL 333 (513)
Q Consensus 328 -~~G~~~ 333 (513)
+.|++.
T Consensus 932 ~~~~~~~ 938 (1022)
T 2o8b_B 932 MVENECE 938 (1022)
T ss_dssp C------
T ss_pred EEecCcc
Confidence 455543
No 89
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.80 E-value=1e-21 Score=192.52 Aligned_cols=177 Identities=11% Similarity=0.052 Sum_probs=107.6
Q ss_pred ccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHH
Q 010314 121 YSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVR 200 (513)
Q Consensus 121 ~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~ 200 (513)
+.+.+|+|+||.+++|+++||+||||||||||+++|+|++ |.+.++ ...+.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-----QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-----ccCCceEEEeCCc-CccccCHh
Confidence 4567999999999999999999999999999999999975 333333 1235689999985 77789999
Q ss_pred HHHHHHHHhcC-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 010314 201 EYLYYSALLQL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLD 279 (513)
Q Consensus 201 E~l~~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD 279 (513)
+++.+...... ........+.+.+.++.+ .+..+. .+..||+||+||+.+ ++++.+|+++|+|||...+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~------~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~ 147 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTV------EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYS 147 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCE------EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTS
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCe------ecccccccccCccCc-eEEecCCCEEEEeCcccccc
Confidence 99876432111 111111223344555443 222233 345899999999988 58888999999999998888
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHH
Q 010314 280 SVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQ 337 (513)
Q Consensus 280 ~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~ 337 (513)
.. +.++ .+.+|++++|........+++++ .+|+ +.+++..
T Consensus 148 ~~--------l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 148 QE--------IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp HH--------HHTT--CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred HH--------HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 64 1222 37789988886443333445444 5564 4555544
No 90
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.79 E-value=1.2e-19 Score=207.61 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=112.6
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHH--------HcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCccc
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAI--------AGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTL 193 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L--------~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l 193 (513)
.+.+++|+++.+.+|++++|+||||||||||||+| .|...|.. +.. ++.+ +.+
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~---~~~-------------~~~~---d~i 708 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCE---SAE-------------VSIV---DCI 708 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEE---EEE-------------EECC---SEE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccc---ccc-------------chHH---HHH
Confidence 35689999999999999999999999999999999 45433321 100 1110 001
Q ss_pred CCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEE
Q 010314 194 IGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL--VMRPHVLFI 271 (513)
Q Consensus 194 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL--~~~P~iLll 271 (513)
+ ..+|+.+.. ..++|+|+++++.+|++| +.+|+++||
T Consensus 709 ~--------------------------------~~ig~~d~l---------~~~lStf~~e~~~~a~il~~a~~~sLlLL 747 (934)
T 3thx_A 709 L--------------------------------ARVGAGDSQ---------LKGVSTFMAEMLETASILRSATKDSLIII 747 (934)
T ss_dssp E--------------------------------EECC------------------CHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred H--------------------------------HhcCchhhH---------HHhHhhhHHHHHHHHHHHHhccCCcEEEE
Confidence 1 112222111 127888888888888888 999999999
Q ss_pred eCCCCCCCHHHHHHH-HHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 272 DEPLYHLDSVSALLM-MVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 272 DEPTsgLD~~~~~~i-~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
||||+|||+.....+ +.+++.+.+ .|.++|++||+. ++..+||++..|.+|++.+.++.+++
T Consensus 748 DEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 748 DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp ESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcE
Confidence 999999999998888 677788876 499999999884 56789999999999999988876654
No 91
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.79 E-value=2e-19 Score=204.03 Aligned_cols=133 Identities=20% Similarity=0.246 Sum_probs=109.9
Q ss_pred CCCCHHHHHHHHHHhcCCCch--------hhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 195 GSLTVREYLYYSALLQLPGFF--------CQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~--------~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
..+||.|++.|...+.++... .+..+++ +.|..+||..+ .++.+ ..|||||+|||+||++|..+
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~------~tLSGGEkQRV~LA~aL~~~ 522 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSA------GTLSGGEAQRIRLATQIGSR 522 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBG------GGCCHHHHHHHHHHHHHTTC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcc------ccCCHHHHHHHHHHHHHhhC
Confidence 358999999997776655421 1233444 45888999764 56654 49999999999999999998
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHH
Q 010314 266 P--HVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACL 336 (513)
Q Consensus 266 P--~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~ 336 (513)
| +||||||||+|||+.....++++|++|++.|.|||+++|+. +.+ ..||+|++| ++|++++.|+++++.
T Consensus 523 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 523 LTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE-DTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-HHH-HSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHH-HhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 5 99999999999999999999999999988899999988875 444 579999999 799999999998764
No 92
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.79 E-value=1.4e-21 Score=201.58 Aligned_cols=185 Identities=15% Similarity=0.117 Sum_probs=132.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC------
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE------ 178 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~------ 178 (513)
.++.+++++.|.. +..+|+++ +.+.+|++++|+||||||||||+++|+|+.+++ .|.|.+.|++..
T Consensus 45 ~i~~~~l~~~~~t----g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i 116 (347)
T 2obl_A 45 PLLRQVIDQPFIL----GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFL 116 (347)
T ss_dssp STTCCCCCSEECC----SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHH
T ss_pred CeeecccceecCC----CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHH
Confidence 4667788888741 35699999 999999999999999999999999999999887 499999886410
Q ss_pred -C-----CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhH-Hhh----hhcCCCCCCC
Q 010314 179 -M-----PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDY-ANK----LIGGHCYMKG 247 (513)
Q Consensus 179 -~-----~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-~~~----~vg~~~~~~~ 247 (513)
. ..+.+.++.|.+. +..+.+. ..+..+.+.++ .+. ..- .+.+..
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~-----~~~~r~~-------------------~~~~~~~~ae~~~~~~~~vl~~-ld~~~~ 171 (347)
T 2obl_A 117 ALLPQSTLSKCVLVVTTSDR-----PALERMK-------------------AAFTATTIAEYFRDQGKNVLLM-MDSVTR 171 (347)
T ss_dssp TTSCHHHHTTEEEEEECTTS-----CHHHHHH-------------------HHHHHHHHHHHHHTTTCEEEEE-EETHHH
T ss_pred HhhhhhhhhceEEEEECCCC-----CHHHHHH-------------------HHHHHHHHHHHHHhccccHHHH-HhhHHH
Confidence 0 0123566665421 2222221 11111111111 110 000 023458
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--cCC-----eEEEEEeCChHHHHhcCCEEEE
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS--TGC-----TLLFTINQSSTEVFGLFDRICL 320 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~--~g~-----tvi~t~h~~~~~i~~~~D~v~v 320 (513)
||+|| |||++| +.+|++ |+|||+.....+.++++++.+ .|. ||++++|+.. ..+||++++
T Consensus 172 lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~ 238 (347)
T 2obl_A 172 YARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRS 238 (347)
T ss_dssp HHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHH
T ss_pred HHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEE
Confidence 99999 899999 688887 999999999999999999874 476 7888777764 567999999
Q ss_pred EeCCeEEEEeChHHH
Q 010314 321 LSNGNTLFFGETLAC 335 (513)
Q Consensus 321 L~~G~iv~~G~~~~~ 335 (513)
|.+|+++..|+..+.
T Consensus 239 i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 239 ILDGHIVLTRELAEE 253 (347)
T ss_dssp HCSEEEEBCHHHHTT
T ss_pred eeCcEEEEeCCHHHc
Confidence 999999999887654
No 93
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.78 E-value=6.9e-21 Score=185.10 Aligned_cols=167 Identities=14% Similarity=0.064 Sum_probs=103.5
Q ss_pred eeeee-eeEEeCCcEEEEEcCCCCcHHHHHHHHH--cCCCCCCCceeEEEECCEeCCC----CCceEEEEcCCcccCCCC
Q 010314 125 VVKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIA--GRLPHSARMYGEVFVNGAKSEM----PYGSYGFVERETTLIGSL 197 (513)
Q Consensus 125 iL~~v-s~~i~~Ge~~aliGpsGsGKSTLl~~L~--G~~~~~~~~~G~I~i~G~~~~~----~~~~~~yv~Q~~~l~~~l 197 (513)
.|+.+ .+-+++|++++|+||||||||||+++|+ |+.++.. |.+.+++..... ..+.++|.+|+....+.+
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 94 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE---PGVFVTLEERARDLRREMASFGWDFEKYEKEGKI 94 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCC---CEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC---eEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCE
Confidence 34444 3478999999999999999999999999 6634432 667776643210 012345555544333444
Q ss_pred CHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 010314 198 TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYH 277 (513)
Q Consensus 198 TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsg 277 (513)
++.++...... .........+ ...+.++..+...+..-..+|+++++||||++
T Consensus 95 ~~~~~~~~~~~--------~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ 147 (251)
T 2ehv_A 95 AIVDGVSSVVG--------LPSEEKFVLE-------------------DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSI 147 (251)
T ss_dssp EEEC----------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHH
T ss_pred EEEEccccccc--------cccccceecc-------------------CcccHHHHHHHHHHHHHhhCCCEEEEccHHHH
Confidence 43333211000 0000000001 12234444444444445689999999999999
Q ss_pred CC-----HHHHHHHHHHHHHHHHcCCeEEEEEeCChHHH---------HhcC-CEEEEEe
Q 010314 278 LD-----SVSALLMMVTLKKLASTGCTLLFTINQSSTEV---------FGLF-DRICLLS 322 (513)
Q Consensus 278 LD-----~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i---------~~~~-D~v~vL~ 322 (513)
|| +..+..+.++++.+++.|+|||+++|+.. ++ ..+| |+|++|+
T Consensus 148 ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~-~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 148 ALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPD-PQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCC-CCcccccccChhhEeeeEEEEEe
Confidence 98 67777799999999888999999888864 55 5788 9999995
No 94
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.78 E-value=8.9e-20 Score=206.28 Aligned_cols=170 Identities=16% Similarity=0.128 Sum_probs=124.5
Q ss_pred CCCCcHHHHHHHHHcCCCCC---C---CceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhc-------
Q 010314 144 PAKSGKSTLLRAIAGRLPHS---A---RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ------- 210 (513)
Q Consensus 144 psGsGKSTLl~~L~G~~~~~---~---~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~------- 210 (513)
.+..||++|.+.+....-|. . ...|+|.++|+++.. ...+++.|.+.|...+.
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~--------------~~~~~v~e~~~~~~~~~~~~~~~~ 335 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITE--------------LSRLPLARVSELLRPYAEEREPGH 335 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHH--------------HHHSBHHHHHHHHHHHHTTCSSCS
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHH--------------HhhcCHHHHHHHHHhhhhhhhhcc
Confidence 35568999999887742221 0 134788888875321 01234555444433221
Q ss_pred -----CCCc--------hhhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCC
Q 010314 211 -----LPGF--------FCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVMRP--HVLFIDEP 274 (513)
Q Consensus 211 -----~~~~--------~~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P--~iLllDEP 274 (513)
+... ..+...+++ .+..+||.++ .++.+ ..|||||||||+||++|+.+| .|||||||
T Consensus 336 ~~~~~~~~~~~~i~~~i~~ei~~rl~-~L~~vGL~~l~l~r~~------~tLSGGe~QRV~LA~aL~~~p~~~llILDEP 408 (842)
T 2vf7_A 336 AERVKNRPEQAIALQRMAADLVKRLD-VLLHLGLGYLGLDRST------PTLSPGELQRLRLATQLYSNLFGVVYVLDEP 408 (842)
T ss_dssp TTSSSSCSSHHHHHHHHHHHHHHHHH-HHHHTTCTTSBTTCBG------GGSCHHHHHHHHHHHHTTTCCCSCEEEEECT
T ss_pred cchhhcchhhHHHHHHHHHHHHHHHH-HHHhCCCCcCCccCCc------CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCc
Confidence 0000 023344555 6788999865 56644 499999999999999999999 59999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHH
Q 010314 275 LYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACL 336 (513)
Q Consensus 275 TsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~ 336 (513)
|+|||+.....++++|++|++.|.|||+++|+. + +...||+|++| ++|++++.|+++++.
T Consensus 409 T~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 409 SAGLHPADTEALLSALENLKRGGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 999999999999999999998899999988875 3 55789999999 799999999988754
No 95
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.78 E-value=3.2e-19 Score=203.04 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=109.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCch--------hhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 010314 194 IGSLTVREYLYYSALLQLPGFF--------CQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (513)
Q Consensus 194 ~~~lTV~E~l~~~~~~~~~~~~--------~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv~IAraL~~ 264 (513)
+..+||.|.+.|...+.++... .+..+++ +.|..+||..+ .++.+ ..|||||||||+||++|..
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~------~tLSGGEkQRV~LA~aL~~ 538 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAA------ATLSGGEAQRIRLATQIGS 538 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBG------GGCCHHHHHHHHHHHHHTT
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCc------ccCCHHHHHHHHHHHHHhh
Confidence 3458999999885444444311 1223344 35788898765 56644 4999999999999999999
Q ss_pred C--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE------eCCeEEEEeChHHHH
Q 010314 265 R--PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL------SNGNTLFFGETLACL 336 (513)
Q Consensus 265 ~--P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL------~~G~iv~~G~~~~~~ 336 (513)
+ |+||||||||+|||+.....++++|++|++.|.|||+++|+. +. ...||+|++| ++|++++.|+++++.
T Consensus 539 ~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl-~~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~ 616 (993)
T 2ygr_A 539 GLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE-DT-IEHADWIVDIGPGAGEHGGRIVHSGPYDELL 616 (993)
T ss_dssp CCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH-HH-HHTCSEEEEECSSSGGGCCSCCEEECHHHHH
T ss_pred CCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH-HH-HHhCCEEEEecCccccCCCEEEEeeCHHHhh
Confidence 9 589999999999999999999999999998899999988875 44 4589999999 799999999998875
Q ss_pred H
Q 010314 337 Q 337 (513)
Q Consensus 337 ~ 337 (513)
.
T Consensus 617 ~ 617 (993)
T 2ygr_A 617 R 617 (993)
T ss_dssp H
T ss_pred h
Confidence 4
No 96
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.77 E-value=3.9e-20 Score=177.48 Aligned_cols=154 Identities=15% Similarity=0.151 Sum_probs=93.8
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC----CceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHH
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSA----RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~----~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 206 (513)
+-+++|++++|+||||||||||+++|+|...+.. ...|.|++++... .....+++++|...+++. |+.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~~-~~~~~~~-- 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT-FRPERIREIAQNRGLDPD-EVLKHIY-- 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC-CCHHHHHHHHHHTTSCHH-HHHHTEE--
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC-CCHHHHHHHHHHcCCCHH-HHhhcEE--
Confidence 5789999999999999999999999999544311 0124555554321 000112222222222111 1222111
Q ss_pred HHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHH-HHHHHHHHHHhh-------CCCEEEEeCCCCCC
Q 010314 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE-RRRVRIARELVM-------RPHVLFIDEPLYHL 278 (513)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGq-rqRv~IAraL~~-------~P~iLllDEPTsgL 278 (513)
+....++++ ++.+..+++++. +|++|++||||++|
T Consensus 96 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 96 -------------------------------------VARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp -------------------------------------EEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred -------------------------------------EEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 112334433 333566666665 99999999999999
Q ss_pred CHH-------H-----HHHHHHHHHHHHH-cCCeEEEEEeCCh---HHHHhcCCEEEEEeCCe
Q 010314 279 DSV-------S-----ALLMMVTLKKLAS-TGCTLLFTINQSS---TEVFGLFDRICLLSNGN 325 (513)
Q Consensus 279 D~~-------~-----~~~i~~~L~~l~~-~g~tvi~t~h~~~---~~i~~~~D~v~vL~~G~ 325 (513)
|+. . ...+++.|+++++ .|.|||+++|... ..+...||++++|++|+
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 984 2 2378888888865 4999999888432 24778999999998753
No 97
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.77 E-value=1e-18 Score=158.66 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=72.5
Q ss_pred CCCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCE
Q 010314 244 YMKGLPCGERRRVRIA------RELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IA------raL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (513)
.+..|||||||||+|| |+|+.+|++|||||||+|||+.++..+.+.|+++.++|.|||+++|+. ++..+||+
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~d~ 131 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAADH 131 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCSE
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhCCE
Confidence 4569999999999876 899999999999999999999999999999999987789999999886 46789999
Q ss_pred EEEE--eCCeE
Q 010314 318 ICLL--SNGNT 326 (513)
Q Consensus 318 v~vL--~~G~i 326 (513)
+++| .+|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 45643
No 98
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.75 E-value=1.1e-19 Score=180.24 Aligned_cols=133 Identities=19% Similarity=0.228 Sum_probs=97.9
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHH
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
.+|+++| +++|++++|+||||||||||+++|+|+++|. .+|+|.++|.+.. |++|+..-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~-------~~~~~~~~~--------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-------YVFKHKKSI--------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC-------SCCCCSSSE---------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce-------eecCCccee---------
Confidence 4899999 8999999999999999999999999998774 1399999886532 223321000
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~ 283 (513)
. . . ..+++.. ..| |++||++|..+|++|++|||| |+.+.
T Consensus 75 -----v--~----q---------~~~gl~~------------~~l------~~~la~aL~~~p~illlDEp~---D~~~~ 113 (261)
T 2eyu_A 75 -----V--N----Q---------REVGEDT------------KSF------ADALRAALREDPDVIFVGEMR---DLETV 113 (261)
T ss_dssp -----E--E----E---------EEBTTTB------------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHH
T ss_pred -----e--e----H---------HHhCCCH------------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHH
Confidence 0 0 0 0122211 123 899999999999999999999 98886
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 284 LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 284 ~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
..++ +. +..|.+|++++|+.. +...||++++|..
T Consensus 114 ~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 114 ETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 6544 33 356999999999864 6788999988854
No 99
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.74 E-value=2.7e-21 Score=184.19 Aligned_cols=146 Identities=19% Similarity=0.159 Sum_probs=113.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccC--CCCCHHHHHHHHHHhc
Q 010314 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLI--GSLTVREYLYYSALLQ 210 (513)
Q Consensus 133 i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~--~~lTV~E~l~~~~~~~ 210 (513)
.++|++++|+||||||||||+++|+|++++ .++|++|++.++ ..+|+.+++.+. +.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~--~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVN--YD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSC--TT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCC--CC
Confidence 358999999999999999999999998643 378999998776 567998886442 11
Q ss_pred CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------CC
Q 010314 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGE----RRRVRIARELVMRPHVLFIDEPLYH-------LD 279 (513)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGq----rqRv~IAraL~~~P~iLllDEPTsg-------LD 279 (513)
.+. ....+.+.++++.+++.+..+.. +..+|+|| +||+++|++++.+|.++++||||++ ||
T Consensus 61 ~~~--~~~~~~~~~~l~~~~~~~~~~~~------~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld 132 (211)
T 3asz_A 61 HPD--AFDLALYLEHAQALLRGLPVEMP------VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVD 132 (211)
T ss_dssp SGG--GBCHHHHHHHHHHHHTTCCEEEC------CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEE
T ss_pred Chh--hhhHHHHHHHHHHHHcCCCcCCC------cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEe
Confidence 111 22345677788888776554442 35899996 4789999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHH-HHcCCeEEEEEeCCh
Q 010314 280 SVSALLMMVTLKKL-ASTGCTLLFTINQSS 308 (513)
Q Consensus 280 ~~~~~~i~~~L~~l-~~~g~tvi~t~h~~~ 308 (513)
+.....+.+.+++. .+.|.|++.++|+..
T Consensus 133 ~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 133 ADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999886 456889888788743
No 100
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.74 E-value=1.6e-19 Score=182.91 Aligned_cols=146 Identities=12% Similarity=0.089 Sum_probs=107.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----------CceEEEEcCCcccCCCCCHHHHH
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----------YGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----------~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
+|++++|+||||||||||+++|+|+++|++ |+|.+.|.+.... ...++|++|+..++|..||.+++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~---g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLG---KKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTT---CCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 699999999999999999999999999875 9999999874321 13589999999999989999999
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~ 283 (513)
.++..... . ..+++..|+.+..+.. ++..++||++|||+|+.+|+.++| .||+.+.
T Consensus 178 ~~~~~~~~-d---------~~llDt~G~~~~~~~~---------~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 178 QAMKARGY-D---------LLFVDTAGRLHTKHNL---------MEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHHTC-S---------EEEECCCCCCTTCHHH---------HHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHHhCCC-C---------EEEecCCCCCCchHHH---------HHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 76532110 0 0123334544333332 334448999999999999995444 4555555
Q ss_pred HHHHHHHHHHHHc-CCeEEEEEeCC
Q 010314 284 LLMMVTLKKLAST-GCTLLFTINQS 307 (513)
Q Consensus 284 ~~i~~~L~~l~~~-g~tvi~t~h~~ 307 (513)
..+++.++.+.+. |.|+|++||.+
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCc
Confidence 6677777887654 89999989975
No 101
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.74 E-value=6.8e-19 Score=197.93 Aligned_cols=144 Identities=19% Similarity=0.151 Sum_probs=104.6
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHH
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~-~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
+.+++|+++. |++++|+||||||||||||+|+|+.. +.. |.+. ......+++++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~---G~~v------pa~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQV---GSFV------PAEEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTT---TCCB------SSSEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhccc---Ccee------ehhccceeeHHH---hhccCCHHH
Confidence 5789999999 99999999999999999999999863 332 5432 112234667665 555666665
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CC
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAREL--VMRPHVLFIDEP---LY 276 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL--~~~P~iLllDEP---Ts 276 (513)
|+. .++|+|+++++.+|++| +.+|+++||||| |+
T Consensus 631 ~l~-----------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs 669 (765)
T 1ewq_A 631 DLA-----------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTS 669 (765)
T ss_dssp ---------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSC
T ss_pred HHH-----------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCC
Confidence 541 15799999999999999 999999999999 99
Q ss_pred CCCHHHH-HHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 277 HLDSVSA-LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 277 gLD~~~~-~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
+||..+. ..+++.|++ .|.++|++||+. +...++ .-.+.++++...
T Consensus 670 ~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~--~l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 670 SLDGVAIATAVAEALHE---RRAYTLFATHYF--ELTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp HHHHHHHHHHHHHHHHH---HTCEEEEECCCH--HHHTCC--CTTEEEEEEEEE
T ss_pred CcCHHHHHHHHHHHHHh---CCCEEEEEeCCH--HHHHhh--hhcceEEEEEEE
Confidence 9998875 567777765 588999988874 345555 222344444443
No 102
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.73 E-value=3.4e-18 Score=195.15 Aligned_cols=145 Identities=15% Similarity=0.139 Sum_probs=99.5
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHH
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
.+.+++||++.+.+|++++|+||||||||||||+|+++.-... .|. ........+++ -+.++..+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq--~g~------~vpa~~~~i~~---~d~i~~~ig--- 724 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ--IGS------YVPAEEATIGI---VDGIFTRMG--- 724 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH--HTC------CBSSSEEEEEC---CSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh--cCc------cccchhhhhhH---HHHHHHhCC---
Confidence 4579999999999999999999999999999999986521100 010 00000011111 111222222
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~ 281 (513)
+.+..... ...+|+||+|++.|+++ +.+|+|+||||||+|||+.
T Consensus 725 -----------------------------~~d~l~~~------~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~ 768 (918)
T 3thx_B 725 -----------------------------AADNIYKG------RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTH 768 (918)
T ss_dssp --------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHH
T ss_pred -----------------------------hHHHHHHh------HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHH
Confidence 22222221 23789999999999999 8999999999999999999
Q ss_pred HHHHHH-HHHHHHHH-cCCeEEEEEeCChHHHHhcCCEE
Q 010314 282 SALLMM-VTLKKLAS-TGCTLLFTINQSSTEVFGLFDRI 318 (513)
Q Consensus 282 ~~~~i~-~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v 318 (513)
....+. .+++.+.+ .|.|+|++||+. ++.+++|+.
T Consensus 769 ~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 769 DGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 999987 77888865 599999998885 455666654
No 103
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.71 E-value=1.2e-19 Score=183.58 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=84.6
Q ss_pred EeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC-CCCCCCceeEEEECCEeCCC--CCceEE
Q 010314 109 KDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR-LPHSARMYGEVFVNGAKSEM--PYGSYG 185 (513)
Q Consensus 109 ~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~-~~~~~~~~G~I~i~G~~~~~--~~~~~~ 185 (513)
+||++.|. .+.++++++|.| +|+|+||+|||||+++|+|. ..+.. | |.++|.+... ....++
T Consensus 2 ~~l~~~~~-----~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~---g-i~~~g~~~~~t~~~~~~~ 66 (301)
T 2qnr_A 2 SNLPNQVH-----RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER---V-ISGAAEKIERTVQIEAST 66 (301)
T ss_dssp ---------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CE
T ss_pred CCCcceEC-----CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCC---C-cccCCcccCCcceEeeEE
Confidence 36677663 456999999998 99999999999999999997 66653 7 8877765321 124578
Q ss_pred EEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC
Q 010314 186 FVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR 265 (513)
Q Consensus 186 yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~ 265 (513)
+++|.+.+...+||.|++-++..... . ......+.. +.+..+..+ +++|||||||+.+||+++
T Consensus 67 ~~~q~~~~~~~ltv~Dt~g~~~~~~~-~--e~~~~l~~~------l~~~~~~~~------~~~sgg~rqrv~~ara~~-- 129 (301)
T 2qnr_A 67 VEIEERGVKLRLTVVDTPGYGDAINC-R--DCFKTIISY------IDEQFERYL------HDESGLNRRHIIDNRVHC-- 129 (301)
T ss_dssp EEEC---CCEEEEEEEEC--------------CTTHHHH------HHHHHHHHH------HHHTSSCCTTCCCCCCCE--
T ss_pred EEecCCCcccCcchhhhhhhhhhcCc-H--HHHHHHHHH------HHHHHHHHH------HHhCHHhhhhhhhhhhhh--
Confidence 99998888888899888866432210 0 000111111 123334433 489999999999999986
Q ss_pred CCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHc-CCeEEEEEeCC
Q 010314 266 PHVLFIDEPLYH-LDSVSALLMMVTLKKLAST-GCTLLFTINQS 307 (513)
Q Consensus 266 P~iLllDEPTsg-LD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~ 307 (513)
+|++||||++ ||+... ++++++.+. +.++|++.|+.
T Consensus 130 --ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 130 --CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADT 167 (301)
T ss_dssp --EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGG
T ss_pred --eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCC
Confidence 9999999985 999873 566666544 66777766664
No 104
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.70 E-value=2.2e-18 Score=194.84 Aligned_cols=157 Identities=16% Similarity=0.095 Sum_probs=108.6
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHH
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
.+.+++|+++. ++|++++|+||||||||||||+|+|+..... .| .........+++++| +++.+++.+
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q--~G------~~vpa~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY--IG------SYVPAQKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT--TT------CCBSSSEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHh--cC------cccchhcccceeHHH---HHhhCCHHH
Confidence 35699999999 9999999999999999999999999743210 12 111111123555544 555666666
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~ 281 (513)
++... ...+|+|+++ ++.+..++.+|+++|||||++|+|+.
T Consensus 662 ~l~~~--------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~ 702 (800)
T 1wb9_A 662 DLASG--------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTY 702 (800)
T ss_dssp ----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred HHHhh--------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChh
Confidence 55211 0145666654 44555578999999999999999998
Q ss_pred HHHHH-HHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeC
Q 010314 282 SALLM-MVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 282 ~~~~i-~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
....+ +.+++.+.+ .|.++|++||+. ++..+||++..+.+|++.+...
T Consensus 703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 703 DGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEEc
Confidence 77775 788888887 499999999886 3557899887788888776544
No 105
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.70 E-value=3.2e-18 Score=163.94 Aligned_cols=169 Identities=11% Similarity=-0.012 Sum_probs=109.1
Q ss_pred ceeeeeeee-EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHH
Q 010314 123 DKVVKSSNG-YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 123 ~~iL~~vs~-~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
...|+++.+ .+++|++++|+||||||||||++.|++...+.+ |.|.+.+.+ .+..+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~--------------------~~~~~ 65 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTE--------------------ESRDS 65 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESS--------------------SCHHH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEcc--------------------cCHHH
Confidence 457888885 899999999999999999999999998765532 555553321 11111
Q ss_pred HHHHHHHhcCCCchhhHH--HHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCC
Q 010314 202 YLYYSALLQLPGFFCQRK--NVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPH--VLFIDEPLYH 277 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~--~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~--iLllDEPTsg 277 (513)
.......+.......... ..++.....++ .. ......|.++.++...+.+...+|+ +|++||||++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 66 IIRQAKQFNWDFEEYIEKKLIIIDALMKEKE-----DQ-----WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp HHHHHHHTTCCCGGGBTTTEEEEECCC---------CT-----TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred HHHHHHHhcchHHHHhhCCEEEEeccccccC-----ce-----eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 111110111100000000 00000000000 00 0112459999999988888888999 9999999988
Q ss_pred C--CHHHHHHHHHHHHHHHH-cCCeEEEEEeCCh-------HHHHhcCCEEEEEeCC
Q 010314 278 L--DSVSALLMMVTLKKLAS-TGCTLLFTINQSS-------TEVFGLFDRICLLSNG 324 (513)
Q Consensus 278 L--D~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~-------~~i~~~~D~v~vL~~G 324 (513)
+ |+.....+++.|+++++ .|.|||+++|... ..+..+||+|++|+..
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 8 99999999999999975 5899999888762 3478899999999764
No 106
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.69 E-value=6.6e-17 Score=161.08 Aligned_cols=150 Identities=13% Similarity=0.169 Sum_probs=103.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcC
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQL 211 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~ 211 (513)
-+++|++++|+||||||||||++.|++.... |.++ .|..... ...+.|+..++... .+.+.+. .+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~-----g~~~-~g~~~~~-~~~v~~~~~e~~~~---~~~~r~~---~~g~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG-----GPDL-LEVGELP-TGPVIYLPAEDPPT---AIHHRLH---ALGA 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT-----CCCT-TCCCCCC-CCCEEEEESSSCHH---HHHHHHH---HHHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc-----CCCc-CCCccCC-CccEEEEECCCCHH---HHHHHHH---HHHh
Confidence 3679999999999999999999999986543 5553 3443211 23577776654320 1111111 1111
Q ss_pred CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHH---HHHH
Q 010314 212 PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY--HLDSVS---ALLM 286 (513)
Q Consensus 212 ~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs--gLD~~~---~~~i 286 (513)
. .......++++.+++.+..+. .+..||+||+|++ ++++.+|++|++||||+ ++|... ...+
T Consensus 93 ~----~~~~~~~~~~~~l~l~~~~~~------~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 93 H----LSAEERQAVADGLLIQPLIGS------LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp T----SCHHHHHHHHHHEEECCCTTS------CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred h----cChhhhhhccCceEEeecCCC------CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 1 112335667788877665544 3458999998865 68889999999999999 999744 4888
Q ss_pred HHHHHHHH-HcCCeEEEEEeCC
Q 010314 287 MVTLKKLA-STGCTLLFTINQS 307 (513)
Q Consensus 287 ~~~L~~l~-~~g~tvi~t~h~~ 307 (513)
++.|++++ +.|+|||+++|+.
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHcCCEEEEEecCC
Confidence 99999987 4599999977765
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.68 E-value=1e-18 Score=180.29 Aligned_cols=166 Identities=16% Similarity=0.164 Sum_probs=99.4
Q ss_pred eeeeee-eeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCC-CceeE-EEECCEeCCCCCceEEEEcCCcccCCCCC
Q 010314 124 KVVKSS-NGYALPGTMTVIMGPAKSGKSTLLRAIAGRL--PHSA-RMYGE-VFVNGAKSEMPYGSYGFVERETTLIGSLT 198 (513)
Q Consensus 124 ~iL~~v-s~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~--~~~~-~~~G~-I~i~G~~~~~~~~~~~yv~Q~~~l~~~lT 198 (513)
..|+.+ .+.+++|++++|+||||||||||++.|++.. +|+. ...|. |++++.... ...++++++|...+++. +
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-H
Confidence 356665 6899999999999999999999999999987 4431 01267 777775321 11233444444333221 2
Q ss_pred HHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh-------hCCCEEEE
Q 010314 199 VREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV-------MRPHVLFI 271 (513)
Q Consensus 199 V~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~-------~~P~iLll 271 (513)
+.+|+.+. . ..-|.+++|++.++++++ .+|++||+
T Consensus 196 v~~ni~~~-----------------------------~---------~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 196 VLKHIYVA-----------------------------R---------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp HGGGEEEE-----------------------------E---------CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred HhhCEEEE-----------------------------e---------cCChHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 22222110 0 001456777777777777 68999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 272 DEPLYHLDSVS------------ALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 272 DEPTsgLD~~~------------~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
||||++||+.. ..++++.|+++++ .|+|||+++|... .+...++....+..|+++.++
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~ 308 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHS 308 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTT
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeec
Confidence 99999999852 4567777777765 4899999877653 444445555666667665443
No 108
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.66 E-value=4.5e-19 Score=195.64 Aligned_cols=188 Identities=15% Similarity=0.102 Sum_probs=111.1
Q ss_pred eEEEEeEEEEEeccccccceeeeee----------eeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCceeEEEEC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSS----------NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH-SARMYGEVFVN 173 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~-~~~~~G~I~i~ 173 (513)
.+.++||+..|..+. +.+|+.+ ++.++. +||+|||||||||||++|+|+..| + +|.|+++
T Consensus 10 ~i~~~~l~~~~~~~~---r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~ 80 (608)
T 3szr_A 10 SVAENNLCSQYEEKV---RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRC 80 (608)
T ss_dssp ----------CHHHH---HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCS
T ss_pred hhhhhhhhHHHHHHH---HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEc
Confidence 468889998885321 1233322 244443 999999999999999999999877 4 4999999
Q ss_pred CEeC--------CCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCC
Q 010314 174 GAKS--------EMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYM 245 (513)
Q Consensus 174 G~~~--------~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~ 245 (513)
|.++ ....+.++|++|+..+++.+||+|++.+.........
T Consensus 81 g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~------------------------------- 129 (608)
T 3szr_A 81 PLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG------------------------------- 129 (608)
T ss_dssp CEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS-------------------------------
T ss_pred CEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc-------------------------------
Confidence 9763 1234578999999999999999999976532110000
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHHc--CCeEEEEEeCCh------HHH
Q 010314 246 KGLPCGERRRVRIARELVMRPHVLFIDEP------LYHLDSVSALLMMVTLKKLAST--GCTLLFTINQSS------TEV 311 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~~~P~iLllDEP------TsgLD~~~~~~i~~~L~~l~~~--g~tvi~t~h~~~------~~i 311 (513)
.++| ++++.++.+....|+++|+||| |+|||+..+..+.++++++..+ +.++++++|+.. ..+
T Consensus 130 ~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~l 206 (608)
T 3szr_A 130 MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSM 206 (608)
T ss_dssp SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHH
T ss_pred cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHH
Confidence 0111 1122222333458999999999 9999999999999999997543 455666665542 111
Q ss_pred H-hc----CCEEEEEeCCeEEEEeChHHH
Q 010314 312 F-GL----FDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 312 ~-~~----~D~v~vL~~G~iv~~G~~~~~ 335 (513)
. .+ ...|+|+.++.++..|+..++
T Consensus 207 a~~v~~~g~rtI~VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 207 AQEVDPEGDRTIGILTKPDLVDKGTEDKV 235 (608)
T ss_dssp HHHHCSSCCSEEEEEECGGGSSSSSTTCC
T ss_pred HHHHhhcCCceEEEecchhhcCcccHHHH
Confidence 1 11 356888888888777765443
No 109
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.64 E-value=3.4e-17 Score=169.26 Aligned_cols=127 Identities=21% Similarity=0.274 Sum_probs=87.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCC-ceEEEEcCCcccCCCCCHHHHHHHHHHhc
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPY-GSYGFVERETTLIGSLTVREYLYYSALLQ 210 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~-~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (513)
...+|++++|+|||||||||||++|+|++++.. .|.|...+.+..... ...+++.|......
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~--~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~--------------- 181 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK--YHHILTIEDPIEFVHESKKCLVNQREVHRD--------------- 181 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHC--CCEEEEEESSCCSCCCCSSSEEEEEEBTTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCC--CcEEEEccCcHHhhhhccccceeeeeeccc---------------
Confidence 678899999999999999999999999987742 266654433322111 11223333211110
Q ss_pred CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 010314 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTL 290 (513)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L 290 (513)
.++..+ +||++|..+|++|++|||| |..+ ++.+
T Consensus 182 ------------------------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~----~~~~ 214 (356)
T 3jvv_A 182 ------------------------------------TLGFSE----ALRSALREDPDIILVGEMR---DLET----IRLA 214 (356)
T ss_dssp ------------------------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHH----HHHH
T ss_pred ------------------------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHH----HHHH
Confidence 112222 8999999999999999999 6555 4444
Q ss_pred HHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCC
Q 010314 291 KKLASTGCTLLFTINQSSTEVFGLFDRICLLSNG 324 (513)
Q Consensus 291 ~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G 324 (513)
.+++..|.+||+|+|... .+ ..+||++.|..|
T Consensus 215 ~~~~~~G~~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 215 LTAAETGHLVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred HHHHhcCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 455677999999888875 34 789999998654
No 110
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.63 E-value=7.8e-18 Score=177.39 Aligned_cols=163 Identities=15% Similarity=0.136 Sum_probs=96.6
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceE
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSY 184 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~ 184 (513)
.+.++||++.|. .+.++++++|.| +|+|+||||||||+++|+|...+... .|.+.+++.. ......+
T Consensus 11 ~l~~~~l~~~y~-----~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 11 YVGFANLPNQVY-----RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp ----CCCCCCTT-----TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC------CCEEEEE
T ss_pred cEEEEecceeEC-----CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc-ceeeeeE
Confidence 578899988773 456999999998 99999999999999999999764321 1222222211 1112457
Q ss_pred EEEcCCcccCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh
Q 010314 185 GFVERETTLIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM 264 (513)
Q Consensus 185 ~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~ 264 (513)
+|++|++.+++.+||.||+.+..... . .. ....+.+ +.+. .++.+++||++|||+++.
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~--~--~~---~~~~i~~------~i~~---------~~~~~l~qr~~IaRal~~ 135 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVD--N--SN---CWQPVID------YIDS---------KFEDYLNAESRVNRRQMP 135 (418)
T ss_dssp ECC------CEEEEEEECC------------------CHHHHH------HHHH---------HHHHHTTTSCC-CCCCCC
T ss_pred EEEEecCCcccceeeeechhhhhhcc--c--hh---hHHHHHH------HHHH---------HHHHHHHHHHHHHHHhcc
Confidence 89999988888899999986643211 0 00 0111111 1122 456677889999999999
Q ss_pred CCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCC
Q 010314 265 RPH---VLFIDEPL-YHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (513)
Q Consensus 265 ~P~---iLllDEPT-sgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (513)
+|+ ||++|||| .+||+... ..++.+.. +.+||+++|+.
T Consensus 136 d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 136 DNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp CC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred CCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 999 99999999 69998873 44455543 67777777774
No 111
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.63 E-value=4.7e-18 Score=160.71 Aligned_cols=176 Identities=11% Similarity=0.014 Sum_probs=97.5
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCCCceeEEEECCEeCCC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL-----PHSARMYGEVFVNGAKSEM 179 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~-----~~~~~~~G~I~i~G~~~~~ 179 (513)
.++++|+++.|. ..++++ +.+.+|..++|+|+||||||||++.|+|.. .++ .|.+.+.+.-...
T Consensus 3 ~l~~~~~~~~~~------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~---~G~~~~~~~~~~~ 71 (210)
T 1pui_A 3 NLNYQQTHFVMS------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKT---PGRTQLINLFEVA 71 (210)
T ss_dssp --------CEEE------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEEE
T ss_pred chhhhhhhheee------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCC---CccceeeEEEEec
Confidence 378999999884 247777 889999999999999999999999999987 443 3655432210000
Q ss_pred CCceEEEEcCCcccC----CCCC---HHHHHHHHHHh-cC----------CCchhhHHHHHHHHHHHcCChhH-Hhhhhc
Q 010314 180 PYGSYGFVERETTLI----GSLT---VREYLYYSALL-QL----------PGFFCQRKNVVEDAIHAMSLSDY-ANKLIG 240 (513)
Q Consensus 180 ~~~~~~yv~Q~~~l~----~~lT---V~E~l~~~~~~-~~----------~~~~~~~~~~v~~~l~~~~L~~~-~~~~vg 240 (513)
..+.++ +.+.+. +.-. .+..+.+.... .. .......+..+.++++..++..+ ....+
T Consensus 72 --~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~- 147 (210)
T 1pui_A 72 --DGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKA- 147 (210)
T ss_dssp --TTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECG-
T ss_pred --CCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecc-
Confidence 001111 111110 0000 11112111110 00 00001122345556666666532 12222
Q ss_pred CCCCCCCCCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeE
Q 010314 241 GHCYMKGLPCGERRR-VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTL 300 (513)
Q Consensus 241 ~~~~~~~LSGGqrqR-v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tv 300 (513)
..+|+||||| +.++++++.+|.++++|||||++|.....++++.|.++..+|.+.
T Consensus 148 -----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~~ 203 (210)
T 1pui_A 148 -----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQPV 203 (210)
T ss_dssp -----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-----
T ss_pred -----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccch
Confidence 3789999999 899999999999999999999999999999999999987666543
No 112
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.62 E-value=4.8e-19 Score=167.34 Aligned_cols=155 Identities=20% Similarity=0.209 Sum_probs=100.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---MPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 212 (513)
|++++|+||||||||||+++|+|+++ +. | |.++|.... ...+.+||++|+. .... +++. .+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~---G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l~---~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SS---G-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPLS---RVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HT---T-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEEE---ECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cC---C-EEEcCEecchhHhhhceEEEEEEec--ccce---ehhh---cccc-
Confidence 78999999999999999999999987 54 8 888886532 2346789999874 1111 1110 0000
Q ss_pred CchhhHHHHHHHHHHHcCChhH-HhhhhcCCCCCCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHH
Q 010314 213 GFFCQRKNVVEDAIHAMSLSDY-ANKLIGGHCYMKGLPCGERRRV-RIAR---ELVMRPHVLFIDE--PLYHLDSVSALL 285 (513)
Q Consensus 213 ~~~~~~~~~v~~~l~~~~L~~~-~~~~vg~~~~~~~LSGGqrqRv-~IAr---aL~~~P~iLllDE--PTsgLD~~~~~~ 285 (513)
+..+. .+..++ .+...+|+|||+++ ++++ |++.+|+|||+|| |+..+|...
T Consensus 67 -----------------~~~~~~~~~~v~--~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~--- 124 (189)
T 2i3b_A 67 -----------------EPPPGKRECRVG--QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF--- 124 (189)
T ss_dssp -----------------CCCSSSCCEESS--SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH---
T ss_pred -----------------cCCccccccccc--eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH---
Confidence 00000 001121 23457999999988 4454 6899999999999 898899865
Q ss_pred HHHHHHHHHHcCCeEEE---EE-eCChHHHHhcCCEEEEEeCCeEEEEe
Q 010314 286 MMVTLKKLASTGCTLLF---TI-NQSSTEVFGLFDRICLLSNGNTLFFG 330 (513)
Q Consensus 286 i~~~L~~l~~~g~tvi~---t~-h~~~~~i~~~~D~v~vL~~G~iv~~G 330 (513)
++.|+++.+...++|+ ++ |+.. ..+.|+|..+.+|+++...
T Consensus 125 -~~~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 125 -IQAVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp -HHHHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred -HHHHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 4455555444445553 33 4432 3567788888888887644
No 113
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.61 E-value=1.1e-15 Score=145.39 Aligned_cols=152 Identities=17% Similarity=0.112 Sum_probs=98.8
Q ss_pred eeeeeee-eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHH
Q 010314 124 KVVKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (513)
Q Consensus 124 ~iL~~vs-~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (513)
..|+.+. +-+++|++++|+||||||||||++.|++ ..+ .+.+++ ..+..+ +.. .
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~---~~v~~i---------------~~~~~~----~~~-~ 61 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG---KKVAYV---------------DTEGGF----SPE-R 61 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC---SEEEEE---------------ESSCCC----CHH-H
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC---CcEEEE---------------ECCCCC----CHH-H
Confidence 4566666 4789999999999999999999999999 322 122332 222211 111 1
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCCh--hHHhhhhcCCCCCCCCCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCC
Q 010314 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGE--RRRVRIARELVMR-PHVLFIDEPLYH 277 (513)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~vg~~~~~~~LSGGq--rqRv~IAraL~~~-P~iLllDEPTsg 277 (513)
+.- .++.+++. +..+.. ++..+++++ +++++.+++++.+ |+++++||||++
T Consensus 62 ~~~-------------------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 62 LVQ-------------------MAETRGLNPEEALSRF-----ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHH-------------------HHHTTTCCHHHHHHHE-----EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHH-------------------HHHhcCCChHHHhhcE-----EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 110 11111111 111111 112455553 6788889999986 999999999999
Q ss_pred CCHH--------HHHHHHHHHHHHHHc-CCeEEEEEeCCh------------HHHHhcCCEEEEEeCC
Q 010314 278 LDSV--------SALLMMVTLKKLAST-GCTLLFTINQSS------------TEVFGLFDRICLLSNG 324 (513)
Q Consensus 278 LD~~--------~~~~i~~~L~~l~~~-g~tvi~t~h~~~------------~~i~~~~D~v~vL~~G 324 (513)
+|+. ....+++.|++++++ |.|||+++|... ..+...||.+++|+..
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9973 335567778888754 899998777643 1467899999999754
No 114
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.60 E-value=1.8e-15 Score=140.86 Aligned_cols=79 Identities=15% Similarity=0.200 Sum_probs=66.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEE
Q 010314 244 YMKGLPCGERRRVRIARELVM----RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRIC 319 (513)
Q Consensus 244 ~~~~LSGGqrqRv~IAraL~~----~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~ 319 (513)
.+..||||||||++||++|+. .|+++||||||+|||+.+...+.++|+++.+. .++|+++|+. .+...||+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~-~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKE-SQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTT-SEEEEECSCH--HHHTTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccC-CEEEEEEecH--HHHHhCCEEE
Confidence 456899999999999999975 46999999999999999999999999998754 5677767774 5678999998
Q ss_pred EE--eCCe
Q 010314 320 LL--SNGN 325 (513)
Q Consensus 320 vL--~~G~ 325 (513)
.+ .+|.
T Consensus 138 ~v~~~~g~ 145 (173)
T 3kta_B 138 GVSMRDGV 145 (173)
T ss_dssp EEEEETTE
T ss_pred EEEecCCE
Confidence 66 4564
No 115
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.58 E-value=1.3e-19 Score=169.79 Aligned_cols=173 Identities=14% Similarity=0.090 Sum_probs=111.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCch
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPGFF 215 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 215 (513)
|++++|+||||||||||+++|++ +. .|.+.++|.+.... ...++++|.....+..++.+++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ- 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHHhcC-
Confidence 68999999999999999999998 22 38899988653211 124566665544445678888765432210000
Q ss_pred hhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 010314 216 CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGL--PCGERRRVRIAR------ELVMRPHVLFIDEPLYHLDSVSALLMM 287 (513)
Q Consensus 216 ~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~L--SGGqrqRv~IAr------aL~~~P~iLllDEPTsgLD~~~~~~i~ 287 (513)
...+++.+........ + +.+ |+|++|++.++. +|+.+|+...+|+ +||+..... +
T Consensus 74 ------~~~ild~~~~~~~~~~-~------~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~ 136 (189)
T 2bdt_A 74 ------NDVVLDYIAFPDEAEA-L------AQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-V 136 (189)
T ss_dssp ------CEEEEESCCCHHHHHH-H------HHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-H
T ss_pred ------CcEEEeeccCHHHHHH-H------HHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-H
Confidence 0001111111111111 1 134 889998998888 9999999888884 899988888 8
Q ss_pred HHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHH
Q 010314 288 VTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLAC 335 (513)
Q Consensus 288 ~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~ 335 (513)
+.++.+.+.+.++|.++|...+++.++||+|+ ++|++++.|+++.+
T Consensus 137 ~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 137 EEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 88888765678888877762357889999998 99999999987653
No 116
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.57 E-value=9.7e-18 Score=156.72 Aligned_cols=148 Identities=14% Similarity=0.055 Sum_probs=94.9
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC---CCCceEEEEcCCcccCCCCCHHHHHHHHHHh
Q 010314 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE---MPYGSYGFVERETTLIGSLTVREYLYYSALL 209 (513)
Q Consensus 133 i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~---~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (513)
+++|++++|+||||||||||+++|+|. ++ .|.|.++|.+.. .....++|++|+.. +..||.+++.+.+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 568999999999999999999999998 33 399999986521 11123567777543 356888888664322
Q ss_pred cCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 010314 210 QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVT 289 (513)
Q Consensus 210 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~ 289 (513)
....... ..++.++..+++..+... ...+..+|+|++||+.++|++..+|+++ +|+.....+.+.
T Consensus 79 ~~~~~~~---~~~~~~~~~~~l~~~~~~----~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 79 YAKEGYF---VILDGVVRPDWLPAFTAL----ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp HHHTSCE---EEECSCCCTTTTHHHHTT----CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred HhccCCe---EEEeccCcHHHHHHHHhc----CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 1000000 001111122233333210 1123479999999999999999999876 688888888877
Q ss_pred HHHHHHcCCeEEE
Q 010314 290 LKKLASTGCTLLF 302 (513)
Q Consensus 290 L~~l~~~g~tvi~ 302 (513)
++.+...+..+|.
T Consensus 144 ~~~l~~~~~~~i~ 156 (191)
T 1zp6_A 144 FADLGAFEHHVLP 156 (191)
T ss_dssp TTCCGGGGGGEEE
T ss_pred HhccCcccccEEE
Confidence 7666433333444
No 117
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.56 E-value=9.6e-17 Score=155.00 Aligned_cols=146 Identities=15% Similarity=0.169 Sum_probs=97.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-CCceEEEEcCCcccCCCCCH----HHHHHHH
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-PYGSYGFVERETTLIGSLTV----REYLYYS 206 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~~~~~~yv~Q~~~l~~~lTV----~E~l~~~ 206 (513)
..++|++++|+||||||||||+++|+|+.+|+ ...|.|.+.+++... ....++|++|++..|+.+++ .|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 45699999999999999999999999998863 256999998865432 23457899987665554443 2221110
Q ss_pred HHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 010314 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLM 286 (513)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i 286 (513)
+..| +.+ +++ +..++..++++||| ||+.++..+
T Consensus 91 ----------------------------------~~~y--g~~---~~~---v~~~l~~G~illLD-----LD~~~~~~i 123 (219)
T 1s96_A 91 ----------------------------------GNYY--GTS---REA---IEQVLATGVDVFLD-----IDWQGAQQI 123 (219)
T ss_dssp ----------------------------------TEEE--EEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHHH
T ss_pred ----------------------------------hccC--CCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHHH
Confidence 0000 112 111 34455568999999 999999999
Q ss_pred HHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEEeChHHHHHHh
Q 010314 287 MVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFFGETLACLQHF 339 (513)
Q Consensus 287 ~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f 339 (513)
.+.+. ++.||++++|+. .++.. |+ +.+| .++++++...+
T Consensus 124 ~~~l~----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 124 RQKMP----HARSIFILPPSK-IELDR---RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp HHHCT----TCEEEEEECSSH-HHHHH---HH--HTTS----CSCHHHHHHHH
T ss_pred HHHcc----CCEEEEEECCCH-HHHHH---HH--HHcC----CCCHHHHHHHH
Confidence 99876 588999988775 34443 42 6677 46676665544
No 118
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.52 E-value=5.6e-18 Score=175.58 Aligned_cols=172 Identities=13% Similarity=0.060 Sum_probs=101.0
Q ss_pred eeeeeeeEEeC--CcEEEEEcCCCCcHHHHHHHHHcCCCCCC-CceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHH
Q 010314 125 VVKSSNGYALP--GTMTVIMGPAKSGKSTLLRAIAGRLPHSA-RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 125 iL~~vs~~i~~--Ge~~aliGpsGsGKSTLl~~L~G~~~~~~-~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
+.+.|++.+.+ |+.++|+||||||||||+++|+|++++.. ...|+|.+++... ..+..+..... +
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~-----------~~~~~~~~~~~-~ 224 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG-----------GDEQAMQYSDY-P 224 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS-----------SCTTSSCTTTH-H
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC-----------CCcccCChhHH-H
Confidence 45679999999 99999999999999999999999998751 0015555432100 00001111122 3
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh-hCCCEEEEeC---CC--
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV-MRPHVLFIDE---PL-- 275 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~-~~P~iLllDE---PT-- 275 (513)
++.+.... . ......+.+-+..++ .+..++.+ ..+|+|++||..+++++. .+|+++|||| |+
T Consensus 225 ~I~~~~q~----~-~~~~~t~~~nl~~~~-~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~ 292 (365)
T 1lw7_A 225 QMALGHQR----Y-IDYAVRHSHKIAFID-TDFITTQA------FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVD 292 (365)
T ss_dssp HHHHHHHH----H-HHHHHHHCSSEEEES-SCHHHHHH------HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC---
T ss_pred HHHHHHHH----H-HHHHHhccCCEEEEe-CCchHHHH------HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCccc
Confidence 33332100 0 000000000000001 11222222 256778888888888875 5999999999 65
Q ss_pred ----CCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 276 ----YHLDSVSALLMMVTLKKLAS-TGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 276 ----sgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
.++|+..+..+.+.|+++.+ .+.+||+++|. . ...+++|++.+|+
T Consensus 293 ~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 293 DGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp --------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 58999999999999998864 48888887654 2 5666777665554
No 119
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.51 E-value=1.4e-17 Score=162.79 Aligned_cols=143 Identities=20% Similarity=0.219 Sum_probs=99.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCCceeEEEECCEeCCCC-CceEEEEcCCcccCCCCCHHHHHHHHHHh-
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIA---GRLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREYLYYSALL- 209 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~---G~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~- 209 (513)
++++++|+||||||||||+++|+ |+..++ .|+|.++|.+.... ...+.+++|+..+++..++.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999 998775 48888776432111 12234556777778888999999764321
Q ss_pred --------cCCCchhhHHHHHHHHHH--HcC------------ChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHH-hhCC
Q 010314 210 --------QLPGFFCQRKNVVEDAIH--AMS------------LSDYANKLIGGHCYMKGLPCGERRRVRIAREL-VMRP 266 (513)
Q Consensus 210 --------~~~~~~~~~~~~v~~~l~--~~~------------L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL-~~~P 266 (513)
..+. ....++.+.. .++ +..+.++ .+..||| || ++| +.+|
T Consensus 103 ~~~~~il~g~~~----~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r------~~~~lSg----rv---~al~~~~P 165 (246)
T 2bbw_A 103 RGQHWLLDGFPR----TLGQAEALDKICEVDLVISLNIPFETLKDRLSRR------WIHPPSG----RV---YNLDFNPP 165 (246)
T ss_dssp TTSCEEEESCCC----SHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE------EEETTTT----EE---EETTTSCC
T ss_pred CCCeEEEECCCC----CHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcC------CCcCCCC----Cc---cccccCCC
Confidence 1111 1112222221 122 2223333 3458999 66 778 9999
Q ss_pred CEEEEe----CCCCCCCHHHHHHHHHHHHHHHHcC
Q 010314 267 HVLFID----EPLYHLDSVSALLMMVTLKKLASTG 297 (513)
Q Consensus 267 ~iLllD----EPTsgLD~~~~~~i~~~L~~l~~~g 297 (513)
++++|| |||++||..+...+.+.|+.+.+++
T Consensus 166 ~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 166 HVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp SSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 999999 9999999999999999999987653
No 120
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.49 E-value=4.7e-15 Score=153.57 Aligned_cols=136 Identities=15% Similarity=0.104 Sum_probs=99.0
Q ss_pred eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC-CC--CCceEEEEc-CCcccCCCCCHH
Q 010314 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS-EM--PYGSYGFVE-RETTLIGSLTVR 200 (513)
Q Consensus 125 iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~-~~--~~~~~~yv~-Q~~~l~~~lTV~ 200 (513)
+++++++.+++|++++|+||||||||||+++|+|+++++. |.|.++|... .. ....++|++ |+..+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~---g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQ---RLITIEDVPELFLPDHPNHVHLFYPSEAKE------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTS---CEEEEESSSCCCCTTCSSEEEEECC------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCc---eEEEECCccccCccccCCEEEEeecCcccc-------
Confidence 3499999999999999999999999999999999999874 9999998531 11 234577777 54321
Q ss_pred HHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010314 201 EYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDS 280 (513)
Q Consensus 201 E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~ 280 (513)
+++++..+|..|+.+|..+|+.+++||++.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012222356666777778899999999986
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeCCe
Q 010314 281 VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSNGN 325 (513)
Q Consensus 281 ~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~ 325 (513)
.++.+.|+.+.....|++.++|..+ +...+||+..|..|.
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3456677777544457788888864 677899999887764
No 121
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.49 E-value=1.7e-15 Score=161.52 Aligned_cols=153 Identities=13% Similarity=0.138 Sum_probs=104.4
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-----------CCceEEEEcCCcccC
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-----------PYGSYGFVERETTLI 194 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-----------~~~~~~yv~Q~~~l~ 194 (513)
.+++||.+.+|++++|+|+||||||||+++|+|++++.+ |+|.++|.+... .++.++|++|+..++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~---G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQG---KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcC---CeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 468999999999999999999999999999999988765 999998755321 123589999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh-hCCC-EEEEe
Q 010314 195 GSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV-MRPH-VLFID 272 (513)
Q Consensus 195 ~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~-~~P~-iLllD 272 (513)
+.+||++++.++...... . -+++..|+.+....+. .+| +|++.+++++. ..|. +||..
T Consensus 360 p~~tV~e~l~~a~~~~~D-v---------VLIDTaGrl~~~~~lm------~EL----~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 360 SASVIFDAIQAAKARNID-V---------LIADTAGRLQNKSHLM------EEL----KKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHHTTCS-E---------EEECCCCSCCCHHHHH------HHH----HHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCC-E---------EEEeCCCccchhhhHH------HHH----HHHHHHHHHhccCCCCeeEEEe
Confidence 889999999876431110 0 0123333322222211 133 47888888764 4574 55555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-cCCeEEEEEeCC
Q 010314 273 EPLYHLDSVSALLMMVTLKKLAS-TGCTLLFTINQS 307 (513)
Q Consensus 273 EPTsgLD~~~~~~i~~~L~~l~~-~g~tvi~t~h~~ 307 (513)
.+|+|.|.. +.++.+.+ .+.|.|++||-+
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKLD 449 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKLD 449 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECGG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcCC
Confidence 588886554 33455553 477888877743
No 122
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.48 E-value=2.2e-15 Score=156.71 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=92.7
Q ss_pred eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-CceEEEEcCCcccCCCCCHHHHH
Q 010314 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-YGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 125 iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
+|++++ +++|++++|+||||||||||+++|+|++++.. +|+|.+.|.+.... ...++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~--~g~I~~~e~~~e~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTK--SYHIITIEDPIEYVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHS--CCEEEEEESSCCSCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCC--CcEEEEecccHhhhhccCceEEEeee------------
Confidence 566665 78999999999999999999999999987741 39997766543321 23455666531
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~ 283 (513)
+|+. +..+ +.+|+++|..+|++|++|||+ |+.+.
T Consensus 191 -------------------------~g~~------------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~ 224 (372)
T 2ewv_A 191 -------------------------VGED------------TKSF------ADALRAALREDPDVIFVGEMR---DLETV 224 (372)
T ss_dssp -------------------------BTTT------------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHH
T ss_pred -------------------------cCCC------------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHH
Confidence 1211 1134 469999999999999999999 77664
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEe
Q 010314 284 LLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLS 322 (513)
Q Consensus 284 ~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~ 322 (513)
.. .++. +..|.+|++++|.. .+...+||++.|.
T Consensus 225 ~~---~l~~-~~~g~~vi~t~H~~--~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 225 ET---ALRA-AETGHLVFGTLHTN--TAIDTIHRIVDIF 257 (372)
T ss_dssp HH---HHHH-HTTTCEEEECCCCC--SHHHHHHHHHHTS
T ss_pred HH---HHHH-HhcCCEEEEEECcc--hHHHHHHHHHHhc
Confidence 43 3443 35688988877765 3677888887664
No 123
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.48 E-value=3.1e-13 Score=130.32 Aligned_cols=152 Identities=18% Similarity=0.262 Sum_probs=86.6
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHc--CCCCCC--CceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHH
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSA--RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G--~~~~~~--~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 206 (513)
+-+++|++++|+||||||||||++.|++ ..++.. ...|.+++++.. .+ ...+.....
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~---------------~~----~~~~~~~~~ 79 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG---------------TF----RPERLLAVA 79 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC---------------Cc----CHHHHHHHH
Confidence 5688999999999999999999999999 454410 012556665432 10 111111111
Q ss_pred HHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH-HHHHHHHh--hCCCEEEEeCCCCCCCHH--
Q 010314 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR-VRIARELV--MRPHVLFIDEPLYHLDSV-- 281 (513)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR-v~IAraL~--~~P~iLllDEPTsgLD~~-- 281 (513)
..+... .++++ +.. .+....+..+... +.-+.+++ .+|+++++|||++.+|+.
T Consensus 80 ~~~g~~---------~~~~~---------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 80 ERYGLS---------GSDVL---------DNV----AYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp HHTTCC---------HHHHH---------HTE----EEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred HHcCCC---------HHHHh---------hCe----EEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 111110 00111 111 0122455555433 33334444 489999999999999975
Q ss_pred -----H-----HHHHHHHHHHHHHc-CCeEEEEEeCChHHH-------------------HhcCCEEEEEeCC
Q 010314 282 -----S-----ALLMMVTLKKLAST-GCTLLFTINQSSTEV-------------------FGLFDRICLLSNG 324 (513)
Q Consensus 282 -----~-----~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i-------------------~~~~D~v~vL~~G 324 (513)
. ...++..|++++++ |.|||+++|.. ... ..+||.+++|+.|
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~-~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV-AQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee-ecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 35566777777654 99999977643 222 2379999999865
No 124
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.48 E-value=6.2e-16 Score=162.62 Aligned_cols=184 Identities=14% Similarity=0.080 Sum_probs=114.1
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcE--EEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCc
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYG 182 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~--~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~ 182 (513)
.+++++ ++.|. ..+ |++||+.+++|++ ++|+||||||||||+|+|+|+.-. |.... ........+
T Consensus 16 ~l~~~~-~~~y~-----~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~-----g~~~~-~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFD-----SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFE-----GEPAT-HTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEE
T ss_pred eEEEee-EEEEC-----Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcccc-----CCcCC-CCCccceEe
Confidence 445555 55552 234 9999999999999 999999999999999999998421 32111 101111124
Q ss_pred eEEEEcCCcccCCCCCHHHHHHHHHHhcCCCch--h----hHHHHHHHHHHHc-CChh----HHhhhhcC-----CCCCC
Q 010314 183 SYGFVERETTLIGSLTVREYLYYSALLQLPGFF--C----QRKNVVEDAIHAM-SLSD----YANKLIGG-----HCYMK 246 (513)
Q Consensus 183 ~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~--~----~~~~~v~~~l~~~-~L~~----~~~~~vg~-----~~~~~ 246 (513)
.++|++|++.+++.+||.||+.++... .... . ......++.|... ++.. ..+..+.- .+..+
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~~--~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~ 160 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQI--NKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH 160 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC-C--CHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-
T ss_pred eEEEEeecCccccccchhhhhhhhhcc--ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC
Confidence 689999999888889999988553211 1000 0 1123344555544 3321 11111000 01124
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHcCCeEEEEEeC
Q 010314 247 GLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK-LASTGCTLLFTINQ 306 (513)
Q Consensus 247 ~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~-l~~~g~tvi~t~h~ 306 (513)
+|+-.+ +.|+++|..++.||++|||+..|.+.....+.+.+++ |...|..|+.++.+
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 677666 7999999999999999999999999999999999986 77778888876543
No 125
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.47 E-value=6.5e-15 Score=150.49 Aligned_cols=160 Identities=11% Similarity=0.045 Sum_probs=107.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------C--ceEEEEcCCcccCCCCCHHHH
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------Y--GSYGFVERETTLIGSLTVREY 202 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---------~--~~~~yv~Q~~~l~~~lTV~E~ 202 (513)
++|++++|+||||||||||+++|+|++++.+ |+|.+.|.+.... . ..+.|++|...++|.++|+||
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~---g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG---FSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC---CEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 5899999999999999999999999998875 9999999875321 1 235699999999999999999
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 010314 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (513)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~ 282 (513)
+.++....... -+++..|+.+.....+ .+|| .|++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~d~----------vliDtaG~~~~~~~l~------~eL~-------~i~ral~~de~llvLDa~t~------ 254 (328)
T 3e70_C 204 IQHAKARGIDV----------VLIDTAGRSETNRNLM------DEMK-------KIARVTKPNLVIFVGDALAG------ 254 (328)
T ss_dssp HHHHHHHTCSE----------EEEEECCSCCTTTCHH------HHHH-------HHHHHHCCSEEEEEEEGGGT------
T ss_pred HHHHHhccchh----------hHHhhccchhHHHHHH------HHHH-------HHHHHhcCCCCEEEEecHHH------
Confidence 97753211100 0122233332222222 2444 38899998888888885554
Q ss_pred HHHHHHHHHHHHH-cCCeEEEEEeCChH--------HHHhcCCEEEEEeCCeE
Q 010314 283 ALLMMVTLKKLAS-TGCTLLFTINQSST--------EVFGLFDRICLLSNGNT 326 (513)
Q Consensus 283 ~~~i~~~L~~l~~-~g~tvi~t~h~~~~--------~i~~~~D~v~vL~~G~i 326 (513)
..+++.++.+.+ .+.|+|++||.+.. .+....-.|..+..|+-
T Consensus 255 -~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 255 -NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp -THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred -HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 355666677764 48888888886521 12233445666665543
No 126
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.47 E-value=3.5e-17 Score=166.66 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=99.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC--------CCCCCceeEEEECCEeCCCCC--------------------ceEEEE-
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRL--------PHSARMYGEVFVNGAKSEMPY--------------------GSYGFV- 187 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~--------~~~~~~~G~I~i~G~~~~~~~--------------------~~~~yv- 187 (513)
++++|+|+||||||||+|+|+|.. .++ .|+|.++|....... +.++++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 589999999999999999999986 444 499999987643210 123444
Q ss_pred --cCCcccCCCCCHHHHHHHHH--Hh--cC-CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 010314 188 --ERETTLIGSLTVREYLYYSA--LL--QL-PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIAR 260 (513)
Q Consensus 188 --~Q~~~l~~~lTV~E~l~~~~--~~--~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAr 260 (513)
+|+..+++..+|.|++.++. .+ .. ..........+..++..+++.++.++.. ++|+||+||+..++
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-------~ls~g~~Q~~~ad~ 154 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-------QFTIAQSQVGYADR 154 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-------HCHHHHHHHHTCSE
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-------hchHHHHHHHhCCE
Confidence 45444444555555543210 00 00 0000000001122334455555555543 68999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCC
Q 010314 261 ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFD 316 (513)
Q Consensus 261 aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D 316 (513)
+++.+|+++ ||| ..+.+.|+++. .+.+|++++|.+. ++..++|
T Consensus 155 ill~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 155 ILLTKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp EEEECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC-CGGGGSC
T ss_pred EEEECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC-CHHHHhC
Confidence 999999987 998 77888888875 5889999888764 3444444
No 127
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.45 E-value=2.8e-15 Score=139.13 Aligned_cols=114 Identities=16% Similarity=0.107 Sum_probs=77.4
Q ss_pred eeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHh
Q 010314 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALL 209 (513)
Q Consensus 130 s~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (513)
++.+.+|+.++|.||||+|||||+++|++.+.+.. |.. +.| +++.+.+..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~---g~~-------------~~~----------~~~~~~~~~---- 81 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK---GIR-------------GYF----------FDTKDLIFR---- 81 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS---CCC-------------CCE----------EEHHHHHHH----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc---CCe-------------EEE----------EEHHHHHHH----
Confidence 34556899999999999999999999999875431 310 111 233333211
Q ss_pred cCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHH
Q 010314 210 QLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMV 288 (513)
Q Consensus 210 ~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs-gLD~~~~~~i~~ 288 (513)
+......- ... -....+.+|++||||||++ ++|+..+..+.+
T Consensus 82 ------------~~~~~~~~-----------------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ 124 (180)
T 3ec2_A 82 ------------LKHLMDEG-----------------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISY 124 (180)
T ss_dssp ------------HHHHHHHT-----------------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHH
T ss_pred ------------HHHHhcCc-----------------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHH
Confidence 00000000 000 1123345999999999996 999999999999
Q ss_pred HHHHHHHcCCeEEEEEeCChHH
Q 010314 289 TLKKLASTGCTLLFTINQSSTE 310 (513)
Q Consensus 289 ~L~~l~~~g~tvi~t~h~~~~~ 310 (513)
++....++|+++|+++|++..+
T Consensus 125 ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 125 IITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHHHHTTCEEEEECCCCSCC
T ss_pred HHHHHHHcCCCEEEEcCCChhH
Confidence 9999887899999999987543
No 128
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.45 E-value=2.4e-14 Score=147.65 Aligned_cols=138 Identities=19% Similarity=0.124 Sum_probs=93.1
Q ss_pred eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCceeEEEEC-CEeCC-CCCceEEEEcCCcccCCCCCHHH
Q 010314 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-HSARMYGEVFVN-GAKSE-MPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 125 iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~-~~~~~~G~I~i~-G~~~~-~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
-++++++. .+|++++|+||||||||||+|+|+|+.+ +.. |+|.++ |.... .....+++++|+..+++..+|+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~---G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILT---NDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCC---C-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhcccccccc---CCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 35566654 4899999999999999999999999988 764 999987 65432 23456899999998988888988
Q ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 010314 202 YLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSV 281 (513)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~ 281 (513)
+. +. .....+....+.++++.+++.++.+.. +.+|| ||+||++||+++ +++.
T Consensus 281 ~~-----l~-~l~~~e~~~~~~e~l~~~gl~~f~~~~------~~~lS-G~~~r~ala~gl---------------i~~~ 332 (358)
T 2rcn_A 281 FG-----LW-HLEPEQITQGFVEFHDYLGHCKYRDCK------HDADP-GCAIREAVENGA---------------IAET 332 (358)
T ss_dssp CC-----CC-CCCHHHHHHTSGGGGGGTTCSSSTTCC------SSSCT-TCHHHHHHHHTS---------------SCHH
T ss_pred hh-----hc-CCCHHHHHHHHHHHHHHcCCchhcCCC------cccCC-HHHHHHHHHhcC---------------CCHH
Confidence 42 11 111123345577888888988776654 45999 999999999864 3444
Q ss_pred HHHHHHHHHHHHH
Q 010314 282 SALLMMVTLKKLA 294 (513)
Q Consensus 282 ~~~~i~~~L~~l~ 294 (513)
-.....++++++.
T Consensus 333 R~~~y~~l~~e~~ 345 (358)
T 2rcn_A 333 RFENYHRILESMA 345 (358)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 4444555666654
No 129
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.42 E-value=5.2e-15 Score=135.68 Aligned_cols=78 Identities=19% Similarity=0.092 Sum_probs=64.1
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHH
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (513)
+.+++++||.+++|++++|+||||||||||+|+|+|++ |.. |+|.++|.+.........+++|+..++ .+||.|+
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~---G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e~ 94 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQ---GNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPEE 94 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCC---SCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTTH
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCC---CeEEECCEeeeeeccCCCcceeccccc-cCCcHHH
Confidence 46899999999999999999999999999999999999 654 999999865421111112789988888 8999999
Q ss_pred HHH
Q 010314 203 LYY 205 (513)
Q Consensus 203 l~~ 205 (513)
+.+
T Consensus 95 l~~ 97 (158)
T 1htw_A 95 LEF 97 (158)
T ss_dssp HHH
T ss_pred HHH
Confidence 854
No 130
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.40 E-value=3.9e-15 Score=156.72 Aligned_cols=161 Identities=16% Similarity=0.119 Sum_probs=95.6
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCC----------cccCC
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERE----------TTLIG 195 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~----------~~l~~ 195 (513)
-+++++.++.|+.++|+|+|||||||||++|+|..+. +.+.+.......++++.++ +.+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~---------i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPK---------IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCE---------ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCcc---------ccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 4789999999999999999999999999999998431 1121111111223333332 22221
Q ss_pred CCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 010314 196 SLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPL 275 (513)
Q Consensus 196 ~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPT 275 (513)
.. .++. .+........++++.++..+++. +. .+..||+|++|++.+|++|+..|.||++
T Consensus 218 ~a--~~~~------~L~~~fl~~~era~~lL~vvDls---~~------~~~~ls~g~~el~~la~aL~~~P~ILVl---- 276 (416)
T 1udx_A 218 GA--SEGK------GLGLEFLRHIARTRVLLYVLDAA---DE------PLKTLETLRKEVGAYDPALLRRPSLVAL---- 276 (416)
T ss_dssp CG--GGSC------CSCHHHHHHHTSSSEEEEEEETT---SC------HHHHHHHHHHHHHHHCHHHHHSCEEEEE----
T ss_pred ch--hhhh------hhhHHHHHHHHHHHhhhEEeCCc---cC------CHHHHHHHHHHHHHHhHHhhcCCEEEEE----
Confidence 10 0000 00000000001112223333332 22 2347999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH-HHcCCeEEEEEeCChHHHHhcCCE
Q 010314 276 YHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDR 317 (513)
Q Consensus 276 sgLD~~~~~~i~~~L~~l-~~~g~tvi~t~h~~~~~i~~~~D~ 317 (513)
+.+|...+ ..++.+++. .+.+.++++++.+....+.++++.
T Consensus 277 NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 277 NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 99999877 455555544 445778777665544445555543
No 131
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.38 E-value=6.6e-13 Score=137.76 Aligned_cols=78 Identities=23% Similarity=0.324 Sum_probs=67.5
Q ss_pred CCCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCE
Q 010314 245 MKGLPCGERRRV------RIARELVMR-PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (513)
Q Consensus 245 ~~~LSGGqrqRv------~IAraL~~~-P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (513)
+..|||||+||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||+++|++ ++..+||+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~--~~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHR--ELEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCG--GGGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChH--HHHhhCCE
Confidence 468999999988 567899999 99999999999999999999999999874 346888888886 36789999
Q ss_pred EEEEe-CCe
Q 010314 318 ICLLS-NGN 325 (513)
Q Consensus 318 v~vL~-~G~ 325 (513)
+++|+ +|.
T Consensus 355 ~~~l~k~~~ 363 (371)
T 3auy_A 355 IINVKKDGN 363 (371)
T ss_dssp EEEEEESSS
T ss_pred EEEEEecCC
Confidence 99997 443
No 132
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.38 E-value=7.8e-13 Score=139.82 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=67.5
Q ss_pred CCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEE
Q 010314 246 KGLPCGERRRVRIARELV----MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLL 321 (513)
Q Consensus 246 ~~LSGGqrqRv~IAraL~----~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL 321 (513)
..||||||||++||++|+ .+|+++||||||++||+..+..+++.|+++...+.++|+++|++ .....||+++.|
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 459999999999999999 57999999999999999999999999999875578899988874 567889999999
Q ss_pred e
Q 010314 322 S 322 (513)
Q Consensus 322 ~ 322 (513)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 133
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.37 E-value=6.5e-14 Score=141.49 Aligned_cols=118 Identities=18% Similarity=0.185 Sum_probs=82.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCCC-----ceEEEEcCCcccC-----CCCCH
Q 010314 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMPY-----GSYGFVERETTLI-----GSLTV 199 (513)
Q Consensus 133 i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i---~G~~~~~~~-----~~~~yv~Q~~~l~-----~~lTV 199 (513)
+.+|++++|+||||||||||+|+|+ +.++.. |+|.+ +|+...... ..+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~---G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRT---QEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCC---SCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcc---cccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3479999999999999999999999 888864 99999 887643221 2479999998653 68899
Q ss_pred HHHH--HHH------HHhcCCCchhhHHHHHHHHHHHcCChh-HHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 010314 200 REYL--YYS------ALLQLPGFFCQRKNVVEDAIHAMSLSD-YANKLIGGHCYMKGLPCGERRRVRIARE 261 (513)
Q Consensus 200 ~E~l--~~~------~~~~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~vg~~~~~~~LSGGqrqRv~IAra 261 (513)
|++ .|+ +.++......+...++.++++.++|.+ ..++.+ +.|||.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~------~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL------KIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH------HHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH------HHHHHHHHHHHHHhcc
Confidence 887 443 112210111233457899999999986 666654 4899999999999873
No 134
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.37 E-value=2.8e-15 Score=139.23 Aligned_cols=138 Identities=16% Similarity=0.136 Sum_probs=84.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-C-------CC-ceEE----EEcCCcccCCCCCHHHHH
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-M-------PY-GSYG----FVERETTLIGSLTVREYL 203 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-~-------~~-~~~~----yv~Q~~~l~~~lTV~E~l 203 (513)
++++|+|+||||||||+++|+|++++.+...|.|.++|.+.. . .+ +.++ ++.|+..+| +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999998876333599999997621 1 11 2355 788877655 100
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHH-cCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCCC
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHA-MSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVL-------FIDEPL 275 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~-~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iL-------llDEPT 275 (513)
.. .+....+.+.++. +. . .|+.++ .+||||||||++||||++.+|++. .-|.|.
T Consensus 77 --------~~--~~~~a~l~~~i~~~l~--g-~dt~i~-----EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~ 138 (171)
T 2f1r_A 77 --------VS--EEEGNDLDWIYERYLS--D-YDLVIT-----EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERV 138 (171)
T ss_dssp --------CC--HHHHTCHHHHHHHHTT--T-CSEEEE-----ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCC
T ss_pred --------CC--hhhhhCHHHHHHhhCC--C-CCEEEE-----CCcCCCCCcEEEEEecccCCCccCccceEEEEecCCc
Confidence 00 0000123344443 32 1 344443 259999999999999999999873 235553
Q ss_pred CC---CCHHHHHHHHHHHHHHHHcCC
Q 010314 276 YH---LDSVSALLMMVTLKKLASTGC 298 (513)
Q Consensus 276 sg---LD~~~~~~i~~~L~~l~~~g~ 298 (513)
.+ +|......+.+.|.+...+|.
T Consensus 139 ~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 139 DGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp SSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred ccCcccCcccHHHHHHHHHHHHhccC
Confidence 22 344456777788766665654
No 135
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.36 E-value=4.5e-13 Score=121.40 Aligned_cols=94 Identities=19% Similarity=0.366 Sum_probs=70.1
Q ss_pred eeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCEeCCCCCceEEEEcCCcccCCCCCHHHH
Q 010314 125 VVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (513)
Q Consensus 125 iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G--~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (513)
+|+++ +|+.++|+||||+|||||+++|+|...+. | .+++++. +... .
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~----g~~~~~~~~~---------------~~~~-~------ 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEA----GKNAAYIDAA---------------SMPL-T------ 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTT----TCCEEEEETT---------------TSCC-C------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhc----CCcEEEEcHH---------------HhhH-H------
Confidence 45555 89999999999999999999999987653 4 3333332 1100 0
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 010314 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (513)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~ 282 (513)
+++.+|+|||+|||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 1245799999999998 66555
Q ss_pred HHHHHHHHHHHHHcCCe-EEEEEeCCh
Q 010314 283 ALLMMVTLKKLASTGCT-LLFTINQSS 308 (513)
Q Consensus 283 ~~~i~~~L~~l~~~g~t-vi~t~h~~~ 308 (513)
+..+++++..+.+.|++ +|+++|.+.
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 88999999998887887 888777554
No 136
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.36 E-value=3.1e-15 Score=153.55 Aligned_cols=175 Identities=12% Similarity=0.041 Sum_probs=112.8
Q ss_pred EEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC------
Q 010314 106 VVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM------ 179 (513)
Q Consensus 106 l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~------ 179 (513)
++++++++.|. .+.+|+++++.+.+|++++|+|+||||||||+++|+|++++.+ |+|.+.|.+...
T Consensus 30 ie~~~~~~~~~-----~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~---g~v~i~~~d~~~~~~~~~ 101 (337)
T 2qm8_A 30 AESRRADHRAA-----VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAG---HKVAVLAVDPSSTRTGGS 101 (337)
T ss_dssp HTCSSHHHHHH-----HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEEECGGGGSSCCC
T ss_pred HeeCCcccccC-----hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCC---CEEEEEEEcCcccccccc
Confidence 55666666552 3468999999999999999999999999999999999988765 999998876421
Q ss_pred ---CCceEEEEcCCcccCCCC------------CHHHHHHHHHHhcC-------CCch---------------------h
Q 010314 180 ---PYGSYGFVERETTLIGSL------------TVREYLYYSALLQL-------PGFF---------------------C 216 (513)
Q Consensus 180 ---~~~~~~yv~Q~~~l~~~l------------TV~E~l~~~~~~~~-------~~~~---------------------~ 216 (513)
....++|++|++.+++.. ++.|.+........ +... .
T Consensus 102 ~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~ 181 (337)
T 2qm8_A 102 ILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAG 181 (337)
T ss_dssp SSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-
T ss_pred hHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCc
Confidence 234578999988777532 12333211000000 0000 0
Q ss_pred hHHHHHH-HHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHH
Q 010314 217 QRKNVVE-DAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVM------RPHVLFIDEPLYHLDSVSALLMMVT 289 (513)
Q Consensus 217 ~~~~~v~-~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~------~P~iLllDEPTsgLD~~~~~~i~~~ 289 (513)
...+.+. .+++...+- ..++. +......+|+|++|++.+|++++. +|++++ ||++|......+++.
T Consensus 182 ~~~~~i~~~i~~~~~iv-vlNK~--Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~ 254 (337)
T 2qm8_A 182 DELQGIKKGIFELADMI-AVNKA--DDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSR 254 (337)
T ss_dssp -----CCTTHHHHCSEE-EEECC--STTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHH
T ss_pred ccHHHHHHHHhccccEE-EEEch--hccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHH
Confidence 0000000 011111110 01110 001124689999999999999987 688887 999999999999999
Q ss_pred HHHHHH
Q 010314 290 LKKLAS 295 (513)
Q Consensus 290 L~~l~~ 295 (513)
|.++..
T Consensus 255 I~~~~~ 260 (337)
T 2qm8_A 255 IEDHRS 260 (337)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988754
No 137
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.33 E-value=3.2e-14 Score=143.01 Aligned_cols=131 Identities=16% Similarity=0.162 Sum_probs=86.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHH----hc
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL----LQ 210 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~----~~ 210 (513)
++.+++|.|+||||||||++.|++++.+. | . ..+.+.+|.|++.+++. ++++|+.+... +.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~----g------~----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~ 94 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK----Y------G----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQ 94 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH----H------G----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc----C------C----CCceEEEeccccccCCh-HHHHHHhccccccchhh
Confidence 68899999999999999999999998652 2 0 02335566999988865 88888876521 11
Q ss_pred ---CCCchhhHHHHHHHHHHHcCCh--hHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 010314 211 ---LPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVS 282 (513)
Q Consensus 211 ---~~~~~~~~~~~v~~~l~~~~L~--~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~ 282 (513)
.|.. .....+.+.++.+... ......+.-..+.+.+||||+||+++|++...+|+|||+|||+++||+..
T Consensus 95 ~~g~p~a--~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 95 GRGLPGT--HDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSCSTTS--BCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred hccCcch--hHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 1221 1233455566655332 00000000022557899999999999833333999999999999999853
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.32 E-value=6.9e-12 Score=131.37 Aligned_cols=158 Identities=16% Similarity=0.216 Sum_probs=92.9
Q ss_pred eeeee-eeEEeCCcEEEEEcCCCCcHHHHHHH--HHcCCCCCC--CceeEEEECCEeCCCCCceEEEEcCCcccCCCCCH
Q 010314 125 VVKSS-NGYALPGTMTVIMGPAKSGKSTLLRA--IAGRLPHSA--RMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTV 199 (513)
Q Consensus 125 iL~~v-s~~i~~Ge~~aliGpsGsGKSTLl~~--L~G~~~~~~--~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV 199 (513)
-|+.+ .+-+++|++++|+||||||||||++. +.+..+++. .-.+.|++++.. .+ ..
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~---------------~~----~~ 226 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG---------------TF----RP 226 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS---------------CC----CH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC---------------cc----CH
Confidence 34443 36789999999999999999999994 456666521 012355555432 11 11
Q ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh--hHHhhhhcCCCCCCCCCH-HHHHHHHHHHHHh--hCCCEEEEeCC
Q 010314 200 REYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPC-GERRRVRIARELV--MRPHVLFIDEP 274 (513)
Q Consensus 200 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~vg~~~~~~~LSG-GqrqRv~IAraL~--~~P~iLllDEP 274 (513)
. ++.+..+.+++. .+.+... +....++ .+.+.+..+.+++ .+|+++++|||
T Consensus 227 ~--------------------rl~~~a~~~gl~~~~vleni~----~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 227 V--------------------RLVSIAQRFGLDPDDALNNVA----YARAYNADHQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp H--------------------HHHHHHHHTTCCHHHHHHTEE----EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred H--------------------HHHHHHHHcCCChHhHhhcEE----EeccCChHHHHHHHHHHHHHHHhcCCceEEecch
Confidence 1 111122223332 1111110 1112222 2333444444443 46999999999
Q ss_pred CCCCCHHHH------------HHHHHHHHHHHHc-CCeEEEEEeCCh------------------HHHHhcCCEEEEEeC
Q 010314 275 LYHLDSVSA------------LLMMVTLKKLAST-GCTLLFTINQSS------------------TEVFGLFDRICLLSN 323 (513)
Q Consensus 275 TsgLD~~~~------------~~i~~~L~~l~~~-g~tvi~t~h~~~------------------~~i~~~~D~v~vL~~ 323 (513)
++.+|+... .++++.|++++++ |.|||+++|... ..+.+.+|.+++|++
T Consensus 283 t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~ 362 (400)
T 3lda_A 283 MALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKK 362 (400)
T ss_dssp GGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEE
T ss_pred hhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEe
Confidence 999996543 6788889998765 999999888711 234677999999987
Q ss_pred Ce
Q 010314 324 GN 325 (513)
Q Consensus 324 G~ 325 (513)
++
T Consensus 363 ~~ 364 (400)
T 3lda_A 363 GK 364 (400)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 139
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.28 E-value=2e-14 Score=151.46 Aligned_cols=132 Identities=17% Similarity=0.138 Sum_probs=90.6
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC---------CceEEEEc------
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP---------YGSYGFVE------ 188 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~---------~~~~~yv~------ 188 (513)
.+|+++ + ..+|++++|+|||||||||||++|+|++++.. |+|.+.|.+.... ...+++.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~---g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSE---RNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTT---SCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCC---CEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 367776 4 37899999999999999999999999988764 9999988664321 12234444
Q ss_pred ---CCccc--CCC----CCHHHHHHHHHHhcC--CC-chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH
Q 010314 189 ---RETTL--IGS----LTVREYLYYSALLQL--PG-FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV 256 (513)
Q Consensus 189 ---Q~~~l--~~~----lTV~E~l~~~~~~~~--~~-~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv 256 (513)
|++.+ ++. .|+.+++.++..-.. .. ....... +.+.|..+++.+.. .. ..|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~------~~LSgg~~QR- 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--IS------SSLLGVLAQR- 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HH------HHEEEEEEEE-
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HH------HHHHHHHHHH-
Confidence 77654 343 588888876532110 00 0011222 33357778887654 33 3899999999
Q ss_pred HHHHHHhhCCCEEEE
Q 010314 257 RIARELVMRPHVLFI 271 (513)
Q Consensus 257 ~IAraL~~~P~iLll 271 (513)
|||+|+.+|+++.-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.26 E-value=1.8e-15 Score=163.44 Aligned_cols=177 Identities=14% Similarity=0.051 Sum_probs=106.0
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe-CCCC-CceEEEEcCCcc--------
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK-SEMP-YGSYGFVERETT-------- 192 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~-~~~~-~~~~~yv~Q~~~-------- 192 (513)
..+++++++.+++|+.++|+|||||||||||++|+|+++|+. |.|.+.|.. .... ...+.++.|...
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~---giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDA---KVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTC---CEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCC---CEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 457899999999999999999999999999999999998874 999998854 2211 223455544322
Q ss_pred --------------cCCCCCHHHHHHHHHHhcCCCch--hhHHHHHHHHHHHcCC-----hhH-HhhhhcCCCCCCCCCH
Q 010314 193 --------------LIGSLTVREYLYYSALLQLPGFF--CQRKNVVEDAIHAMSL-----SDY-ANKLIGGHCYMKGLPC 250 (513)
Q Consensus 193 --------------l~~~lTV~E~l~~~~~~~~~~~~--~~~~~~v~~~l~~~~L-----~~~-~~~~vg~~~~~~~LSG 250 (513)
++..++..|++.+...+...... ......+.++++++.. ... ....-.-......+||
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 22345555554332222111000 0000112333333322 211 1110000012235799
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEE--EEeCChHHHHhcC
Q 010314 251 GERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLF--TINQSSTEVFGLF 315 (513)
Q Consensus 251 GqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~--t~h~~~~~i~~~~ 315 (513)
||+||+++|. + | |+|||+.....+++.|.++...+.|+++ ++|.. .++...|
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l-~ei~~~~ 457 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKL-EKMADFL 457 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHH-HHHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHH-HHHHHHc
Confidence 9999987751 2 7 9999998877777777777666778774 55553 5666555
No 141
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=3e-12 Score=130.76 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=73.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc-CCCCCCCceeEEEECCEeCCC---CCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCCc
Q 010314 139 TVIMGPAKSGKSTLLRAIAG-RLPHSARMYGEVFVNGAKSEM---PYGSYGFVERETTLIGSLTVREYLYYSALLQLPGF 214 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G-~~~~~~~~~G~I~i~G~~~~~---~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 214 (513)
+.|.||||+|||||+++|+| +..+.. |.|.++|..... ....+++++|.+.+.-..+- ... .
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~---g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-~- 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGV---YRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD---------MGN-N- 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTC---CC------------------CCEECSSEEEECCC--------------C-
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCC---CeEEecceeecccccccceeeeecccceEEecHhh---------cCC-c-
Confidence 89999999999999999999 677664 999998865321 12456777776543211110 000 0
Q ss_pred hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 010314 215 FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294 (513)
Q Consensus 215 ~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~ 294 (513)
. ...+.+.++.+....-.+. .. .||| +..+|+|+|+|||++ ||+.++..+++.|.+..
T Consensus 105 --~-~~~~~~~i~~~~~~~~~~~------~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 --D-RIVIQELLKEVAQMEQVDF------QD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp --C-HHHHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred --c-hHHHHHHHHHHHHhccccc------cc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 0 0123333333211100011 00 3566 788999999999999 99999999999998864
Q ss_pred HcCCeEEEEEeCCh
Q 010314 295 STGCTLLFTINQSS 308 (513)
Q Consensus 295 ~~g~tvi~t~h~~~ 308 (513)
.+.++|+++|++.
T Consensus 163 -~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 163 -KNIRLIMVCDSMS 175 (354)
T ss_dssp -TTEEEEEEESCSC
T ss_pred -CCCEEEEEeCCHH
Confidence 4678888888864
No 142
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.25 E-value=8.9e-15 Score=139.33 Aligned_cols=121 Identities=17% Similarity=0.115 Sum_probs=67.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCC
Q 010314 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLP 212 (513)
Q Consensus 133 i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 212 (513)
.++|++++|+||||||||||+++|+|++++. | ..++++.+++..+.. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C-------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 4589999999999999999999999998753 2 124555555444321 122221000000011
Q ss_pred CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH-HHHhhCCCEEEEeCCC
Q 010314 213 GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA-RELVMRPHVLFIDEPL 275 (513)
Q Consensus 213 ~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA-raL~~~P~iLllDEPT 275 (513)
.. .....+.+.+..+...+..+... ......+|+||+||+++| ++++.++.++++|||.
T Consensus 81 ~~--~~~~~~~~~l~~l~~~~~i~~p~--~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 81 ET--FDFEGFQRLCHALKHQERVIYPL--FDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp GG--BCHHHHHHHHHHHHHCSCEEEEE--EETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred ch--hhHHHHHHHHHHHhcCCceeccc--CCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 10 11122223333221111011111 112236799999999998 8888888888888874
No 143
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.23 E-value=7.9e-13 Score=133.41 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=71.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCC-----CceEEEEcCCcc-----------
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMP-----YGSYGFVERETT----------- 192 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i---~G~~~~~~-----~~~~~yv~Q~~~----------- 192 (513)
.+.+|++++|+||||||||||+|+|+|+.+|.. |+|.+ +|+..... .+.++|++|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~---G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRV---SEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccc---cceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 345799999999999999999999999999874 99999 88764321 124789999874
Q ss_pred -----cCCCCCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCCh-hHHhhhhcCCCCCCCCCH
Q 010314 193 -----LIGSLTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLS-DYANKLIGGHCYMKGLPC 250 (513)
Q Consensus 193 -----l~~~lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~vg~~~~~~~LSG 250 (513)
+||.+|+ ||+.|.. ... . .+...++.++|+.++|. +..++++ +.||+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~~-~--~e~~~~v~~~l~~~~L~~~~~~~~~------~~lse 294 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CNH-V--DEPECGVKEAVENGEIAESRYENYV------KMFYE 294 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CCS-S--SCSSCHHHHHHHHTSSCHHHHHHHH------HHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-CcC-C--CCCCcHHHHHHHcCCCCHHHHHHHH------HHHHH
Confidence 6889999 9987642 111 1 23345689999999995 6777654 47774
No 144
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.17 E-value=1.1e-14 Score=145.09 Aligned_cols=139 Identities=16% Similarity=0.129 Sum_probs=93.1
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----CceEEEEcCCc-ccCCC
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YGSYGFVERET-TLIGS 196 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~-~l~~~ 196 (513)
..+++++++.+++| ++|+||||||||||+++|+|...+ |.|.++|.+.... .+.+++++|.. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 35889999999999 999999999999999999998765 8899998654221 12355666653 34455
Q ss_pred CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010314 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLY 276 (513)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs 276 (513)
+++.|++.... +.. . .... -.+....++++. .|||||+||+.|++|+..+|++| ||++.
T Consensus 106 i~~~Deid~~~----~~r--~-~~~~------~~~~~~~~~~l~------~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 106 VIFFDEVDALC----PRR--S-DRET------GASVRVVNQLLT------EMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEEETCTTTC----C------------------CTTHHHHHHH------HHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred eEeeehhhhhh----ccc--C-CCcc------hHHHHHHHHHHH------hhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 55555553211 000 0 0000 013344555554 89999999999999999999986 88864
Q ss_pred ------------CCCHHHHHHHHHH
Q 010314 277 ------------HLDSVSALLMMVT 289 (513)
Q Consensus 277 ------------gLD~~~~~~i~~~ 289 (513)
-.|...+.+|++.
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~ 189 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKT 189 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHH
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHH
Confidence 2355666665554
No 145
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.16 E-value=5e-12 Score=127.79 Aligned_cols=115 Identities=21% Similarity=0.245 Sum_probs=68.2
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE---CCEeCCCCC---ce-EEEEcCCcccCC----CCCH
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV---NGAKSEMPY---GS-YGFVERETTLIG----SLTV 199 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i---~G~~~~~~~---~~-~~yv~Q~~~l~~----~lTV 199 (513)
+.+.+|++++|+||||+|||||+|+|+|+.++.. |+|.+ +|+...... +. .+|++|++.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRT---NEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccc---cceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 5667999999999999999999999999988764 99998 776543211 11 699999987765 6899
Q ss_pred HHHH--HHHHH--h----cCCC--chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHH
Q 010314 200 REYL--YYSAL--L----QLPG--FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRR 255 (513)
Q Consensus 200 ~E~l--~~~~~--~----~~~~--~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqR 255 (513)
|++ .|+.. + +... ...+....+.++++.++|.+.+..... .|+.|++||
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~------~lls~~~~~ 303 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYV------EFMTEIKDR 303 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH------HHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHH------HHHHHHhhc
Confidence 888 34311 1 1111 112334568999999999875443322 677787763
No 146
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.12 E-value=4.3e-14 Score=147.53 Aligned_cols=169 Identities=17% Similarity=0.122 Sum_probs=115.0
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCC------C---CCCceeEEEECCEeC------CCCCce---EEEEcCCccc
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLP------H---SARMYGEVFVNGAKS------EMPYGS---YGFVERETTL 193 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~------~---~~~~~G~I~i~G~~~------~~~~~~---~~yv~Q~~~l 193 (513)
.+++|..++|+|+||+|||||+|+|+|... | -....|.|.++|... ..+.+. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 456899999999999999999999999321 0 012369999988431 011222 3467788888
Q ss_pred CCCCCHHHHH--HHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC--CEE
Q 010314 194 IGSLTVREYL--YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP--HVL 269 (513)
Q Consensus 194 ~~~lTV~E~l--~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P--~iL 269 (513)
.+..+..|++ .|...++... .++..++..+ +. .+..++|+. +| +++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d----------~il~Vvd~~~--d~------~i~~v~~~~------------dP~~di~ 145 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVD----------AIYQVVRAFD--DA------EIIHVEGDV------------DPIRDLS 145 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCS----------EEEEEEECCC--TT------CSSCCSSSS------------CHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHH----------HHHHHHhccc--cc------eeeeecccc------------Ccchhhh
Confidence 8887776655 3322222110 0111111111 11 222456643 89 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHH-HHcCCeEEEEEeCChHHHHhcCCEEE-EEeCC-eEEEEeChH
Q 010314 270 FIDEPLYHLDSVSALLMMVTLKKL-ASTGCTLLFTINQSSTEVFGLFDRIC-LLSNG-NTLFFGETL 333 (513)
Q Consensus 270 llDEPTsgLD~~~~~~i~~~L~~l-~~~g~tvi~t~h~~~~~i~~~~D~v~-vL~~G-~iv~~G~~~ 333 (513)
++|||+.++|+......++.++.+ ...|.|++ +|.. ..+.++||++. +|.+| ++++.|+..
T Consensus 146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCC
Confidence 999999999999999999999998 66677754 5654 68899999999 99999 888777653
No 147
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.11 E-value=2.3e-13 Score=139.20 Aligned_cols=164 Identities=21% Similarity=0.161 Sum_probs=102.4
Q ss_pred ceeeeeeeeEEeCC-------cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCceeEEEECCEeC-----CCCCceEEEEcC
Q 010314 123 DKVVKSSNGYALPG-------TMTVIMGPAKSGKSTLLRAIAGRLPHS-ARMYGEVFVNGAKS-----EMPYGSYGFVER 189 (513)
Q Consensus 123 ~~iL~~vs~~i~~G-------e~~aliGpsGsGKSTLl~~L~G~~~~~-~~~~G~I~i~G~~~-----~~~~~~~~yv~Q 189 (513)
..+++++++.+++| +.++|.||||+|||||+++|+|.+... ...+|.+..++.+. ......+.|++|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 45788888888876 889999999999999999999986221 01246665554332 112346899999
Q ss_pred CcccCCCCCHHHHHHHHHHhcCCC---chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCC
Q 010314 190 ETTLIGSLTVREYLYYSALLQLPG---FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRP 266 (513)
Q Consensus 190 ~~~l~~~lTV~E~l~~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P 266 (513)
.+.+.+ ++.|++.......... ......+.+...+..++|.. +.+. +..||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~------~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR------SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC------GGGSCHHHHTTCSEE-------
T ss_pred hhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC------cccCCHHHHHhcCce-------
Confidence 888765 7888885433221100 00111233444455555544 3333 348999999998665
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChHHHHhcCCE
Q 010314 267 HVLFIDEPLYHLDSVSALLMMVTLKKLAST-GCTLLFTINQSSTEVFGLFDR 317 (513)
Q Consensus 267 ~iLllDEPTsgLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~~i~~~~D~ 317 (513)
.+||+.+..++.+.|++.++. +. .|. .+.+..++++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~~~~~-----~~~-~~~~~~ia~~ 211 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAASLMDV-----EIE-DAAAEMIAKR 211 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHHHTTC-----CBC-HHHHHHHHHT
T ss_pred ---------eeCCCCCHHHHHHHHHHHHHHcCC-----CcC-HHHHHHHHHh
Confidence 788999999999999988753 42 233 3445555553
No 148
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.06 E-value=2.9e-14 Score=135.01 Aligned_cols=57 Identities=14% Similarity=0.204 Sum_probs=42.5
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEEEeC
Q 010314 258 IAR-ELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICLLSN 323 (513)
Q Consensus 258 IAr-aL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~vL~~ 323 (513)
+|+ +++.+|++++|||+|+++|..+...|.+.|..+.++ +...|. . ..||+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~--~---~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKE--P---GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGS--T---TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhc--c---CCceEEEECCC
Confidence 455 678888888899999999999999999998887643 111341 1 56999988763
No 149
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.06 E-value=3.1e-10 Score=120.71 Aligned_cols=173 Identities=12% Similarity=0.059 Sum_probs=109.4
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee-EEEECCEeCCCCCceEEEEcCCcccCCCCCHHH
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE 201 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G-~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E 201 (513)
...|+++.+-+.+|+++.|.|++|+|||||+..|++...+.. | .|.+ +.-+ ++..+
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~---g~~Vl~--------------~s~E------~s~~~ 246 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT---NENVAI--------------FSLE------MSAQQ 246 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS---SCCEEE--------------EESS------SCHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEE--------------EECC------CCHHH
Confidence 357888888899999999999999999999999998654321 3 3333 2211 22222
Q ss_pred HHHH--HHHhcCC-------CchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh--hCCCEEE
Q 010314 202 YLYY--SALLQLP-------GFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV--MRPHVLF 270 (513)
Q Consensus 202 ~l~~--~~~~~~~-------~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~--~~P~iLl 270 (513)
...- +.....+ ....+...++.++++.++..++.-. ...++|.+|.+ +.++.++ .+|++++
T Consensus 247 l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~------d~~~~s~~~i~--~~~~~l~~~~~~~liv 318 (454)
T 2r6a_A 247 LVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYID------DTPSIRVSDIR--AKCRRLKQESGLGMIV 318 (454)
T ss_dssp HHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEE------CCTTCCHHHHH--HHHHHHHTTTCCCEEE
T ss_pred HHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEE------CCCCCCHHHHH--HHHHHHHHHcCCCEEE
Confidence 2111 1011111 0001122334455554433222111 12378999987 5677776 6899999
Q ss_pred EeCCCCCCC--------HHHHHHHHHHHHHHHHc-CCeEEEEEeC-----------Ch-------HHHHhcCCEEEEEeC
Q 010314 271 IDEPLYHLD--------SVSALLMMVTLKKLAST-GCTLLFTINQ-----------SS-------TEVFGLFDRICLLSN 323 (513)
Q Consensus 271 lDEPTsgLD--------~~~~~~i~~~L~~l~~~-g~tvi~t~h~-----------~~-------~~i~~~~D~v~vL~~ 323 (513)
+|+++...+ ......+.+.|+.++++ +.+||+++|- |. ..+...||.|++|+.
T Consensus 319 ID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r 398 (454)
T 2r6a_A 319 IDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR 398 (454)
T ss_dssp EECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred EccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence 999999774 33447788888988854 8999997771 21 146778999999987
Q ss_pred CeE
Q 010314 324 GNT 326 (513)
Q Consensus 324 G~i 326 (513)
++.
T Consensus 399 ~~~ 401 (454)
T 2r6a_A 399 DDY 401 (454)
T ss_dssp TTC
T ss_pred ccc
Confidence 764
No 150
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.05 E-value=6.3e-11 Score=119.81 Aligned_cols=113 Identities=17% Similarity=0.125 Sum_probs=79.4
Q ss_pred eeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHH
Q 010314 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSAL 208 (513)
Q Consensus 129 vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~ 208 (513)
+++...+|++++|+|+|||||||++..|++.+.+.+ |+|.+.+.+.... ...|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g---~kV~lv~~D~~r~-----------------~a~e------- 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEG---KSVVLAAADTFRA-----------------AAIE------- 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEECTTCH-----------------HHHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcC---CEEEEEccccccH-----------------HHHH-------
Confidence 445566899999999999999999999999987654 7787765432100 0011
Q ss_pred hcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 010314 209 LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV---RIARELVMRPHVLFIDEPLYHLDSVSALL 285 (513)
Q Consensus 209 ~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv---~IAraL~~~P~iLllDEPTsgLD~~~~~~ 285 (513)
.+..+++.+++.. ...+|||+.+++ +|++++..+|+++|+|||.. ......
T Consensus 150 ------------qL~~~~~~~gl~~-----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~ 203 (306)
T 1vma_A 150 ------------QLKIWGERVGATV-----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKN 203 (306)
T ss_dssp ------------HHHHHHHHHTCEE-----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHH
T ss_pred ------------HHHHHHHHcCCcE-----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHH
Confidence 1223344445431 225789999999 99999999999999999974 344556
Q ss_pred HHHHHHHHH
Q 010314 286 MMVTLKKLA 294 (513)
Q Consensus 286 i~~~L~~l~ 294 (513)
+++.|+.+.
T Consensus 204 l~~eL~~l~ 212 (306)
T 1vma_A 204 LMEELRKVH 212 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
No 151
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.03 E-value=7.3e-10 Score=106.67 Aligned_cols=60 Identities=25% Similarity=0.289 Sum_probs=44.7
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HcCCeEEEEEeCChHH-------HHhcCCEEEEEeC
Q 010314 264 MRPHVLFIDEPLYHL--DSVSALLMMVTLKKLA-STGCTLLFTINQSSTE-------VFGLFDRICLLSN 323 (513)
Q Consensus 264 ~~P~iLllDEPTsgL--D~~~~~~i~~~L~~l~-~~g~tvi~t~h~~~~~-------i~~~~D~v~vL~~ 323 (513)
.+|+++++|+|++.+ |+....+++..|.+++ +.|.|||+++|..... +.+.||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655566666666665 5689999988876431 4678999999964
No 152
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.98 E-value=8e-10 Score=111.10 Aligned_cols=118 Identities=14% Similarity=0.063 Sum_probs=82.0
Q ss_pred eeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHH
Q 010314 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYS 206 (513)
Q Consensus 127 ~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~ 206 (513)
+++++. +|++++|+|+||+||||++..|+|.+.+.+ |+|.+.+.+.... .++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~---~~v~l~~~d~~~~----------------~~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAADTQRP----------------AAR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTT---CCEEEEECCSSCH----------------HHH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCcccH----------------hHH-HHH---
Confidence 678887 999999999999999999999999987654 7888766542110 000 101
Q ss_pred HHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHH
Q 010314 207 ALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP-LYHLDSVSALL 285 (513)
Q Consensus 207 ~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEP-TsgLD~~~~~~ 285 (513)
..+.+..++.-+... ....-.+.+|.+|+.++..+++++|+||| +.++|.....+
T Consensus 146 ----------------~~~~~~~~l~~~~~~--------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~ 201 (295)
T 1ls1_A 146 ----------------RLLGEKVGVPVLEVM--------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGE 201 (295)
T ss_dssp ----------------HHHHHHHTCCEEECC--------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHH
T ss_pred ----------------HHhcccCCeEEEEcC--------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHH
Confidence 011223344321100 01233456789999998899999999999 99999988888
Q ss_pred HHHHHHHH
Q 010314 286 MMVTLKKL 293 (513)
Q Consensus 286 i~~~L~~l 293 (513)
+.+..+.+
T Consensus 202 l~~~~~~~ 209 (295)
T 1ls1_A 202 LARLKEVL 209 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhhc
Confidence 87777665
No 153
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.94 E-value=8.2e-12 Score=137.62 Aligned_cols=159 Identities=18% Similarity=0.103 Sum_probs=99.6
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcc---------
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETT--------- 192 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~--------- 192 (513)
...+++++++.+.+|+.++|+||||+|||||+++|++++++.. .|.+.+++.+.......++++++...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~--~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET--LEDILVFPNPEDENMPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS--CEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc--CCeEEEeCCcccccCCcEEEEecchHHHHHHHHHH
Confidence 3468899999999999999999999999999999999988752 48888887665444456788876431
Q ss_pred -------------cCCCCCHHHHHHHHHHhcCCCch-hhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHH
Q 010314 193 -------------LIGSLTVREYLYYSALLQLPGFF-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRI 258 (513)
Q Consensus 193 -------------l~~~lTV~E~l~~~~~~~~~~~~-~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~I 258 (513)
.+..+++.+|+.....-..+... .+.. ....+.+|..+.... ...++|+|++|++..
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~---~~~~~L~G~~~~~~~------~~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATG---AHAGALLGDVRHDPF------QSGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHTCC-----------CCCEEEECCTTCSSCCEEECTT---CCHHHHHCEECCCCC----------CCCCGGGGEEC
T ss_pred hhccchhhhhhcccccccccccceeeccccCCCCCEEEcCC---CCHHhcCceEEechh------hcCCccccccccccC
Confidence 11111111111000000000000 0000 001111121111001 114799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010314 259 ARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKK 292 (513)
Q Consensus 259 AraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~ 292 (513)
++....++.+||+||... |++..+..+++.|.+
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999988 899999888888874
No 154
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.94 E-value=1.2e-09 Score=112.30 Aligned_cols=148 Identities=23% Similarity=0.253 Sum_probs=86.5
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhc
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQ 210 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~ 210 (513)
+-+++|+++.|.||+|||||||+..++......+ |. +.|+.-+..+.+ . +.
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g---~~--------------vlyi~~E~~~~~-------~-~a---- 106 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAG---GI--------------AAFIDAEHALDP-------E-YA---- 106 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CC--------------EEEEESSCCCCH-------H-HH----
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---Ce--------------EEEEECCCCcCH-------H-HH----
Confidence 3688999999999999999999888875432221 22 333333321110 0 11
Q ss_pred CCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC----------
Q 010314 211 LPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMR--PHVLFIDEPLYHL---------- 278 (513)
Q Consensus 211 ~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~--P~iLllDEPTsgL---------- 278 (513)
+.+|+.. .+-.+. ...+.. +-+.++++++.+ |+++++||+++.+
T Consensus 107 ----------------~~lG~~~-~~l~i~-----~~~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~g 162 (349)
T 2zr9_A 107 ----------------KKLGVDT-DSLLVS-----QPDTGE--QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMG 162 (349)
T ss_dssp ----------------HHTTCCG-GGCEEE-----CCSSHH--HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC--
T ss_pred ----------------HHcCCCH-HHeEEe-----cCCCHH--HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccc
Confidence 1112110 000010 112332 345678888765 9999999999998
Q ss_pred CH---HHHHHHHHHHHHH----HHcCCeEEEEEeCChH---------------HHHhcCCEEEEEeCCeEEEEeC
Q 010314 279 DS---VSALLMMVTLKKL----ASTGCTLLFTINQSST---------------EVFGLFDRICLLSNGNTLFFGE 331 (513)
Q Consensus 279 D~---~~~~~i~~~L~~l----~~~g~tvi~t~h~~~~---------------~i~~~~D~v~vL~~G~iv~~G~ 331 (513)
|+ ..++.+.+.+++| .+.|+|||++.|.... .+..+||.++.++.++++..|+
T Consensus 163 d~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 163 DSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 33 2223444555554 3459999997775421 2567899999998877655443
No 155
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.92 E-value=8.1e-11 Score=126.50 Aligned_cols=177 Identities=15% Similarity=0.057 Sum_probs=101.8
Q ss_pred eeeeEEeCCcEEEEEcCCCCcHHHHHHHHHc--CCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCC--CHHHHH
Q 010314 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAG--RLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSL--TVREYL 203 (513)
Q Consensus 128 ~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G--~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~l--TV~E~l 203 (513)
.+++.+.++..++|.|++||||||++++|.. +..... |++.+.+.+.... . ++....+|++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p---~~v~l~liDpK~~-e-----l~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQP---EDVRFIMIDPKML-E-----LSVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCT---TTEEEEEECCSSS-G-----GGGGTTCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCC---ceEEEEEECCchh-h-----hhhhccCCcccceeecCH
Confidence 4677788899999999999999999999875 333322 6666555442210 0 0110111221 122222
Q ss_pred HHHHH-hcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHH----------HHHHHHhhCCC-EEEE
Q 010314 204 YYSAL-LQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRV----------RIARELVMRPH-VLFI 271 (513)
Q Consensus 204 ~~~~~-~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv----------~IAraL~~~P~-iLll 271 (513)
..+.. ++. ...+.+++ .+++..+|+.++.+..- .....+||||+||. .+|+++...|. ++++
T Consensus 230 ~~a~~~L~~--~~~EmerR-~~ll~~~Gv~~i~~yn~---~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvI 303 (512)
T 2ius_A 230 KDAANALRW--CVNEMERR-YKLMSALGVRNLAGYNE---KIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLV 303 (512)
T ss_dssp HHHHHHHHH--HHHHHHHH-HHHHHHTTCSSHHHHHH---HHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEE
T ss_pred HHHHHHHHH--HHHHHHHH-HHHHHHcCCccHHHHHH---HHHHHhhcCCcccccccccccchhccccccccCCcEEEEE
Confidence 11111 110 01233333 46788888876543210 01125788887752 35667778898 8999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH----cCCeEEEEEeCChHH-----H-HhcCCEEEE
Q 010314 272 DEPLYHLDSVSALLMMVTLKKLAS----TGCTLLFTINQSSTE-----V-FGLFDRICL 320 (513)
Q Consensus 272 DEPTsgLD~~~~~~i~~~L~~l~~----~g~tvi~t~h~~~~~-----i-~~~~D~v~v 320 (513)
||++.-+|.. ...+.+.|.++++ .|.++|+++|.+..+ + ..+.+||++
T Consensus 304 DE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 304 DEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp ETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred eCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 9999988843 3456666666643 277899999987622 3 345556655
No 156
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.90 E-value=4.5e-10 Score=119.92 Aligned_cols=50 Identities=14% Similarity=0.011 Sum_probs=46.6
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (513)
.+|+++|+.+++ ++++|+|||||||||||++|+|+++|+. |+|.++|++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~I~~~g~~~ 67 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDL---TLLNFRNTTE 67 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCT---TTCCCCCTTS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCC---CEEEECCEEc
Confidence 489999999999 9999999999999999999999999875 9999999653
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.90 E-value=1.7e-09 Score=108.72 Aligned_cols=142 Identities=13% Similarity=0.109 Sum_probs=87.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHHHHHHHhcCCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYLYYSALLQLPG 213 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~ 213 (513)
.+|++++|+|+||+||||++..|++.+.+.. | ..+.++.++.. ..++.|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~---G-------------~~V~lv~~D~~---r~~a~eqL~~~~------ 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEK---H-------------KKIAFITTDTY---RIAAVEQLKTYA------ 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTT---C-------------CCEEEEECCCS---STTHHHHHHHHH------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhc---C-------------CEEEEEecCcc---cchHHHHHHHHH------
Confidence 4799999999999999999999999987532 4 23556665542 235555553311
Q ss_pred chhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010314 214 FFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293 (513)
Q Consensus 214 ~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l 293 (513)
+.+++... ...+. ..-+.+|++ +.+|+++|+| |+|+|+.....+.++.+-+
T Consensus 158 -------------~~~gl~~~-----------~~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l 208 (296)
T 2px0_A 158 -------------ELLQAPLE-----------VCYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETI 208 (296)
T ss_dssp -------------TTTTCCCC-----------BCSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHS
T ss_pred -------------HhcCCCeE-----------ecCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHH
Confidence 11222110 01122 333555554 5999999999 9999987665555444433
Q ss_pred H---HcCCeEEEEEeCChHHHHhcCCEEEEEeCCeEEEE
Q 010314 294 A---STGCTLLFTINQSSTEVFGLFDRICLLSNGNTLFF 329 (513)
Q Consensus 294 ~---~~g~tvi~t~h~~~~~i~~~~D~v~vL~~G~iv~~ 329 (513)
. ..+.++|+-..+...++.++++++..+..+.++..
T Consensus 209 ~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 209 PFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp CCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred hhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 2 12334444223334577888887766777777764
No 158
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.87 E-value=9.2e-11 Score=118.56 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=74.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEE-------------------eCCcEEEEEcCCCCcHHHHHHHHHcCCC--CC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYA-------------------LPGTMTVIMGPAKSGKSTLLRAIAGRLP--HS 163 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~aliGpsGsGKSTLl~~L~G~~~--~~ 163 (513)
.++++||++.|. .+++++++.+ .+|+++||+||||||||||+++|+|+++ |+
T Consensus 37 ~i~~~~v~~~y~-------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 37 DLSLEEVAEIYL-------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp TCCHHHHHHTHH-------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccchHhHHHHHH-------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 578888887762 5889999988 8999999999999999999999999877 66
Q ss_pred CCceeEEEE---CCEeCCC-CCceEEEEcCCcccCCCCCHHHHHHHHHHh
Q 010314 164 ARMYGEVFV---NGAKSEM-PYGSYGFVERETTLIGSLTVREYLYYSALL 209 (513)
Q Consensus 164 ~~~~G~I~i---~G~~~~~-~~~~~~yv~Q~~~l~~~lTV~E~l~~~~~~ 209 (513)
+ |+|.+ +|..... ..+.++++ |...+++.+|+.+++.+...+
T Consensus 110 ~---G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 110 H---RRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp C---CCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred C---CeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 4 99999 8754311 12346777 777777889999999776544
No 159
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.81 E-value=2.7e-10 Score=106.95 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=45.0
Q ss_pred eeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCC-----CCCceEEEEcCCcccCCCCCHHHHH
Q 010314 130 NGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSE-----MPYGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 130 s~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~-----~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
|+.+.+|++++|+||||||||||+++|+|+.+ .+.+.+.... .....++|++|++.+++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 45677999999999999999999999999864 2444443321 1134578888887666555554443
No 160
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.77 E-value=3.6e-12 Score=126.54 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=78.2
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----CceEEEEcCCcc-cCCC
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P----YGSYGFVERETT-LIGS 196 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~----~~~~~yv~Q~~~-l~~~ 196 (513)
..+++++++.+++| ++|+||||||||||+++|++... .|.|.++|.+... . ...+++++|... ..+.
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 35789999999999 89999999999999999999875 2889998754211 0 123455666542 4555
Q ss_pred CCHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCE
Q 010314 197 LTVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHV 268 (513)
Q Consensus 197 lTV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~i 268 (513)
+++.|++......+.... ........+ ..+..+. .|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~-~~~~~~~~~---------~~~~ll~------~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGV-GGGNDEREQ---------TLNQLLV------EMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC---------CHHHHH---------HHHHHHH------HHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhccccccc-CCcchHHHH---------HHHHHHH------HHhCCCCCCCEEEEEecCCchh
Confidence 666666633211110000 000000111 1222222 7899999999999999999976
No 161
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.72 E-value=1.1e-09 Score=102.25 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010314 254 RRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKL 293 (513)
Q Consensus 254 qRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l 293 (513)
+.+.+|++|+.+|+++++| ||+||.....++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3478899999999999999 9999999999999988653
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.71 E-value=5.8e-12 Score=123.06 Aligned_cols=126 Identities=15% Similarity=0.135 Sum_probs=77.8
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCC-C----CceEEEEcCCc-ccCCCC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEM-P----YGSYGFVERET-TLIGSL 197 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~-~----~~~~~yv~Q~~-~l~~~l 197 (513)
.+++++++.+++| ++|+||||||||||+++|++... .|.|.++|.+... . .+.+++++|.. ...+.+
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 5789999999999 99999999999999999999875 2889988754210 0 12344555553 234555
Q ss_pred CHHHHHHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 010314 198 TVREYLYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (513)
Q Consensus 198 TV~E~l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEP 274 (513)
++.|++......+.... ........+ ..+.++. .|||||+||+.|++++..+|++ +|++
T Consensus 112 ~~~Deid~l~~~~~~~~-~~~~~~~~~---------~~~~ll~------~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 112 VFIDEIDAVGRKRGSGV-GGGNDEREQ---------TLNQLLV------EMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEEETHHHHHC----------CHHHHH---------HHHHHHH------HHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EEehhhhhhhcccCccc-cccchHHHH---------HHHHHHH------HHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 66666532211110000 000000111 1122222 6899999999999999999986 4543
No 163
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.60 E-value=1e-08 Score=98.55 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=23.3
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHH-cCCCC
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA-GRLPH 162 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~-G~~~~ 162 (513)
.+..+++||.+++|++++|+||||||||||+++|+ |+.++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35688999999999999999999999999999999 99754
No 164
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.58 E-value=1.6e-08 Score=104.09 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=28.9
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~ 163 (513)
+=+++|+++.|.||+|||||||+..+++...+.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~ 88 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM 88 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 367899999999999999999999999876543
No 165
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.55 E-value=2.3e-09 Score=103.78 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=40.0
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (513)
.|+++|+...+. . ++.+.+ ++++|+|||||||||||++|+|+++|+. |+|.++|.+.
T Consensus 9 ~l~l~~~~~~~~----------~--~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~---G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFA----------R--TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDL---TLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEE----------E--EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCT---TTC-------
T ss_pred EEEEEeeecccC----------C--EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCC---CeEEECCEEc
Confidence 467777754331 0 455566 8999999999999999999999999875 9999998654
No 166
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.51 E-value=1.3e-07 Score=101.02 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HcCCeEEEEEeCC
Q 010314 250 CGERRRVRIARELVMRPHVLFIDEP----------LYHLDSVSALLMMVTLKKLA----STGCTLLFTINQS 307 (513)
Q Consensus 250 GGqrqRv~IAraL~~~P~iLllDEP----------TsgLD~~~~~~i~~~L~~l~----~~g~tvi~t~h~~ 307 (513)
|++++|..+++|....|.|||+||+ +.|.|......+.++|..+. ..+..||.++|++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 6778888899999999999999999 44677777677777777663 2466778777775
No 167
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.47 E-value=2.2e-07 Score=94.91 Aligned_cols=127 Identities=12% Similarity=0.169 Sum_probs=83.5
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHH
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
.-|+.+.+-+.+|+++.|.|++|+|||||+.-++......+ +. +.|+.- .++..+.+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g---~~--------------Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD---RG--------------VAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---CE--------------EEEEES------SSCHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---Ce--------------EEEEeC------CCCHHHHH
Confidence 35666666788999999999999999999988876432111 22 233221 23443322
Q ss_pred HHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010314 204 YYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSA 283 (513)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~ 283 (513)
.++......+.+..+.+ + .||.++.+|+..|...+.+++++|.|+|... .
T Consensus 91 ----------------~Rlls~~~~v~~~~l~~---g------~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i 140 (338)
T 4a1f_A 91 ----------------LRALSDLTSINMHDLES---G------RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----I 140 (338)
T ss_dssp ----------------HHHHHHHHCCCHHHHHH---T------CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----H
T ss_pred ----------------HHHHHHhhCCCHHHHhc---C------CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----H
Confidence 11222222233333332 2 7999999999999999999999999998654 3
Q ss_pred HHHHHHHHHHHH-c-CCeEEEE
Q 010314 284 LLMMVTLKKLAS-T-GCTLLFT 303 (513)
Q Consensus 284 ~~i~~~L~~l~~-~-g~tvi~t 303 (513)
.+|...++++.+ . |..+|++
T Consensus 141 ~~i~~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 141 EQIRLQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEE
Confidence 366677777764 3 5666664
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.45 E-value=5.8e-08 Score=90.62 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=32.7
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 010314 256 VRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLA 294 (513)
Q Consensus 256 v~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~ 294 (513)
...|++|+.+|.++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887653
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.40 E-value=8.9e-09 Score=96.88 Aligned_cols=40 Identities=28% Similarity=0.361 Sum_probs=31.9
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeC
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKS 177 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~ 177 (513)
...++|++++|+||||||||||+++|+|.+ |.+.++|...
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~ 63 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAF 63 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGG
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEccccc
Confidence 344589999999999999999999999974 7788887553
No 170
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.39 E-value=1.1e-06 Score=88.90 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=30.9
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.-|+.+.+-+.+|+++.|.|++|+|||||+..++..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 457777777899999999999999999998888753
No 171
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.38 E-value=1.2e-07 Score=107.17 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=58.8
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEE
Q 010314 245 MKGLPCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRI 318 (513)
Q Consensus 245 ~~~LSGGqrqRv~IAraL~~~P~iLllDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v 318 (513)
+.-+|.|+.+|..++..++.++++||+|||.. +||......+++.+........+|+++.+++...+..+++..
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence 44689999999999999999999999999996 999887777777776655456788886455556777777743
No 172
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.37 E-value=1.9e-08 Score=104.03 Aligned_cols=150 Identities=15% Similarity=0.141 Sum_probs=82.4
Q ss_pred CCcE-EEEEcCCCCcHHHHHHHHHcCCCCC--------CCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHH---H
Q 010314 135 PGTM-TVIMGPAKSGKSTLLRAIAGRLPHS--------ARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVRE---Y 202 (513)
Q Consensus 135 ~Ge~-~aliGpsGsGKSTLl~~L~G~~~~~--------~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E---~ 202 (513)
.|-. ++|+|++|||||||++.|+|..... ....|.|.++|.+... ....|++.+.+ ...|.. .
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-~DT~G~i~~lp----~~lve~f~~t 251 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-VDTVGFIRGIP----PQIVDAFFVT 251 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-EECCCBCSSCC----GGGHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-EeCCCchhcCC----HHHHHHHHHH
Confidence 3444 9999999999999999999986421 0246899998864311 11234443321 111221 1
Q ss_pred HHHHHH----h---cCCCc---hhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHH----HHH-hhCCC
Q 010314 203 LYYSAL----L---QLPGF---FCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIA----REL-VMRPH 267 (513)
Q Consensus 203 l~~~~~----~---~~~~~---~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IA----raL-~~~P~ 267 (513)
+..... + ..... ..+....+.++++.+++.+..--.+. ..+..+|+|+++|+.++ +++ ..+|+
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~--NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTL--NKIDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEE--ECGGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEE--ECCCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 110000 0 00110 01112234667777766432200000 01225688888988887 555 33444
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 010314 268 VLFIDEPLYHLDSVSALLMMVTLKKLAS 295 (513)
Q Consensus 268 iLllDEPTsgLD~~~~~~i~~~L~~l~~ 295 (513)
+ +|+|++|......+++.|.++..
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999988753
No 173
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.36 E-value=3.6e-08 Score=96.72 Aligned_cols=52 Identities=21% Similarity=0.265 Sum_probs=35.9
Q ss_pred eEEEEeE-EEEEeccccccceeeeeeeeEEeC---CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 105 SVVWKDL-TVTIKGKRRYSDKVVKSSNGYALP---GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 105 ~l~~~~l-s~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++++|+ ++.|. ....+|+++|+.+.+ |++++|+|++||||||++++|++.+
T Consensus 17 ~l~~~~~~~~~~~----~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD----EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec----CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6899999 99882 234699999999999 9999999999999999999999864
No 174
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.31 E-value=3.9e-07 Score=93.65 Aligned_cols=58 Identities=9% Similarity=0.033 Sum_probs=46.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEE
Q 010314 245 MKGLPCGERRRVRIARELVMRPHVLFID-EPLYHLDSVSALLMMVTLKKLASTGCTLLFTI 304 (513)
Q Consensus 245 ~~~LSGGqrqRv~IAraL~~~P~iLllD-EPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~ 304 (513)
+..+|+|++|++. +.+...++-|+++| +|+.++|......+++.+..+.. +..+|++.
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~ 287 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVI 287 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEE
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 3478999998886 66666778889999 99999999998888888877643 66676666
No 175
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.25 E-value=2.3e-07 Score=86.14 Aligned_cols=28 Identities=43% Similarity=0.659 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~~~ 163 (513)
|++++|+||||||||||+++|+|++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 6789999999999999999999998753
No 176
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.22 E-value=6.4e-08 Score=90.98 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=40.6
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEE--EECCEeC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEV--FVNGAKS 177 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I--~i~G~~~ 177 (513)
...+.+++..++|++++|+||||||||||+++|++++.. .|.+ +++|...
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~----~G~~~~~~d~d~~ 64 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ----KGKLCYILDGDNV 64 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh----cCceEEEecCchh
Confidence 455667777789999999999999999999999998763 2766 7777543
No 177
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.22 E-value=7.5e-06 Score=83.71 Aligned_cols=142 Identities=15% Similarity=0.178 Sum_probs=77.7
Q ss_pred eeeee-eEEeCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHH
Q 010314 126 VKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGR--LPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (513)
Q Consensus 126 L~~vs-~~i~~Ge~~aliGpsGsGKSTLl~~L~G~--~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (513)
|+.+- +-+++|+++.|.||+|+|||||+..|+.. .++.. | |. ...+.|+.-+..+ .....
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~---g-----g~-----~~~vlyi~~E~~~----~~~~l 173 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAG---G-----YP-----GGKIIFIDTENTF----RPDRL 173 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTT---T-----BC-----CCEEEEEESSSCC----CHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhccccc---C-----CC-----CCeEEEEECCCCC----CHHHH
Confidence 44433 56889999999999999999999998874 22210 0 00 1234455443321 12222
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHH-HHHHHHHHHHHh----hCCCEEEEeCCCCC
Q 010314 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCG-ERRRVRIARELV----MRPHVLFIDEPLYH 277 (513)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGG-qrqRv~IAraL~----~~P~iLllDEPTsg 277 (513)
......+... .+++++.+. +....++. +.+.+..++.++ .+++++++|+.++-
T Consensus 174 ~~~~~~~g~~---------~~~~l~~l~-------------~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 174 RDIADRFNVD---------HDAVLDNVL-------------YARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp HHHHHHTTCC---------HHHHHHTEE-------------EEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHcCCC---------HHHHHhcee-------------EeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 2111111110 011222110 11122333 234555666666 56999999999987
Q ss_pred CCHH------------HHHHHHHHHHHHHHc-CCeEEEEEeC
Q 010314 278 LDSV------------SALLMMVTLKKLAST-GCTLLFTINQ 306 (513)
Q Consensus 278 LD~~------------~~~~i~~~L~~l~~~-g~tvi~t~h~ 306 (513)
+... ...++++.|+.++++ +.+||++.|-
T Consensus 232 ~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 232 FRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp HHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 6432 135566667777654 8888885553
No 178
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.21 E-value=2.4e-07 Score=94.10 Aligned_cols=75 Identities=13% Similarity=0.069 Sum_probs=54.0
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC--------------CceEEEE-cCC
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP--------------YGSYGFV-ERE 190 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~--------------~~~~~yv-~Q~ 190 (513)
++++++.+.+|++++|+|+||+||||++..|++.+.+.+ |+|.+.+.+.... ...+.++ +|.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g---~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELG---YKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 368888889999999999999999999999999987654 8898876553210 2346777 565
Q ss_pred cccCCCCCHHHHH
Q 010314 191 TTLIGSLTVREYL 203 (513)
Q Consensus 191 ~~l~~~lTV~E~l 203 (513)
....|..++.+++
T Consensus 172 ~~~~p~~~~~~~l 184 (320)
T 1zu4_A 172 LNADPASVVFDAI 184 (320)
T ss_dssp TTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4444433444444
No 179
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.20 E-value=1.1e-05 Score=81.82 Aligned_cols=142 Identities=20% Similarity=0.251 Sum_probs=78.7
Q ss_pred eeeeee-eEEeCCcEEEEEcCCCCcHHHHHHHHHcCC-CCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHH
Q 010314 125 VVKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAGRL-PHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREY 202 (513)
Q Consensus 125 iL~~vs-~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~-~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~ 202 (513)
.|+.+- +-+++|+++.|.||+|+|||||+..++... .+.. .| |. ...+.|+.-+..+ .....
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~--~g-----g~-----~~~vlyi~~e~~~----~~~~l 158 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE--KG-----GL-----SGKAVYIDTEGTF----RWERI 158 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG--GT-----CC-----SCEEEEEESSSCC----CHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc--cC-----CC-----CCeEEEEECCCCC----CHHHH
Confidence 344442 578999999999999999999999888642 2210 01 10 1234454433221 12211
Q ss_pred HHHHHHhcCCCchhhHHHHHHHHHHHcCCh--hHHhhhhcCCCCCCCCCHH-HHHHHHHHHHHh---hCCCEEEEeCCCC
Q 010314 203 LYYSALLQLPGFFCQRKNVVEDAIHAMSLS--DYANKLIGGHCYMKGLPCG-ERRRVRIARELV---MRPHVLFIDEPLY 276 (513)
Q Consensus 203 l~~~~~~~~~~~~~~~~~~v~~~l~~~~L~--~~~~~~vg~~~~~~~LSGG-qrqRv~IAraL~---~~P~iLllDEPTs 276 (513)
.... +.+++. ++.+... +.+..++. +.+.+..++.++ .+|+++++|+.++
T Consensus 159 ~~~~--------------------~~~g~~~~~~~~~l~----~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 159 ENMA--------------------KALGLDIDNVMNNIY----YIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHH--------------------HHTTCCHHHHHHTEE----EEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHH--------------------HHhCCCHHHHhccEE----EEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 1111 112221 1111110 11223433 335677788888 6799999999998
Q ss_pred CCCH--------H----HHHHHHHHHHHHHH-cCCeEEEEEeC
Q 010314 277 HLDS--------V----SALLMMVTLKKLAS-TGCTLLFTINQ 306 (513)
Q Consensus 277 gLD~--------~----~~~~i~~~L~~l~~-~g~tvi~t~h~ 306 (513)
-++. . ...++++.|+.+++ .+.+||++.|-
T Consensus 215 l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 215 HFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 6532 1 12456666666664 48888886553
No 180
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.19 E-value=6.9e-07 Score=82.10 Aligned_cols=38 Identities=32% Similarity=0.151 Sum_probs=34.1
Q ss_pred ee--eeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 010314 125 VV--KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (513)
Q Consensus 125 iL--~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~ 163 (513)
.+ +++++.+.+| +++|+||||||||||+++|.+++.+.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 45 7889999999 99999999999999999999987654
No 181
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.15 E-value=1e-06 Score=82.21 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=27.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~ 163 (513)
++.+|++++|+||||||||||+++|++++.++
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 46799999999999999999999999998554
No 182
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.15 E-value=6.5e-07 Score=84.09 Aligned_cols=69 Identities=20% Similarity=0.113 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHH--HhcCCEEEEEe
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEV--FGLFDRICLLS 322 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i--~~~~D~v~vL~ 322 (513)
+.|+.+|..++..+..+|+.+.++ .+.++|.....+.+.+... .+.++|+.+|... +. ...||.+++|+
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~-e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLI-ENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTT-TTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhh-hcCcHhhCCEEEEEE
Confidence 678888999988888887654333 3345566555555544332 3557777665432 33 56789888874
No 183
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.12 E-value=1.2e-06 Score=82.21 Aligned_cols=39 Identities=23% Similarity=0.133 Sum_probs=24.8
Q ss_pred cceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 122 SDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 122 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
...+++||||.+.+|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 345899999999999999999999999999999999865
No 184
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.11 E-value=1.2e-06 Score=80.90 Aligned_cols=37 Identities=11% Similarity=0.186 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN 173 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~ 173 (513)
+|++++|+||||||||||+++|++..++. ..|.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 79999999999999999999999987642 24655543
No 185
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.08 E-value=1e-08 Score=110.17 Aligned_cols=125 Identities=16% Similarity=0.151 Sum_probs=76.8
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCC-----CceEEEEcCCcc-cCCCC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMP-----YGSYGFVERETT-LIGSL 197 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~-----~~~~~yv~Q~~~-l~~~l 197 (513)
.+++++++.+++| ++|+||||+|||||+++|+|... .+.|.++|.+.... ...+..++|... ..|.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 4688889999999 89999999999999999999864 28888888653211 012334444432 23333
Q ss_pred CHHHHHHHHHHhcC---CCchhhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 010314 198 TVREYLYYSALLQL---PGFFCQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELVMRPHVLFIDEP 274 (513)
Q Consensus 198 TV~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~~~P~iLllDEP 274 (513)
.+.|++......+. .....+....+ +.++. .||||++|+..|+++...+|++ |||+
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l-------------~~LL~------~Ldg~~~~~~viviAatn~p~~--LD~a 185 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTL-------------NQLLV------EMDGFEKDTAIVVMAATNRPDI--LDPA 185 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHH-------------HHHHH------HGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHH-------------HHHHH------HhcccccCccEEEEEecCChhh--cCcc
Confidence 33333321000000 00001111112 22222 5788999999999999999987 8988
Q ss_pred CC
Q 010314 275 LY 276 (513)
Q Consensus 275 Ts 276 (513)
.-
T Consensus 186 Ll 187 (499)
T 2dhr_A 186 LL 187 (499)
T ss_dssp TS
T ss_pred cc
Confidence 75
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.08 E-value=6.7e-07 Score=94.63 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=50.3
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCEEEE-EeCCeEEEEeChH
Q 010314 264 MRPHVLFIDEPLYHLDS-VSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDRICL-LSNGNTLFFGETL 333 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~-~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~v~v-L~~G~iv~~G~~~ 333 (513)
.+|+|||+||+..-.+. ..+..++..+..+.+.|+.||+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 48999999999887664 6788899999998878889999888865443333344332 4556666666553
No 187
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.03 E-value=2.3e-05 Score=77.62 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHH----cCCeEEEEEeCC---hHHH
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLYHLDS----------VSALLMMVTLKKLAS----TGCTLLFTINQS---STEV 311 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTsgLD~----------~~~~~i~~~L~~l~~----~g~tvi~t~h~~---~~~i 311 (513)
+++++.|..++.+...+|.+||+||+.+.++. .....++..+..+.. .+..||.+++.+ ...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 35667777777888889999999999877653 223334444444321 134455566653 2334
Q ss_pred HhcCCEEEEE
Q 010314 312 FGLFDRICLL 321 (513)
Q Consensus 312 ~~~~D~v~vL 321 (513)
..-|++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4456665544
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.01 E-value=5.8e-06 Score=84.84 Aligned_cols=57 Identities=9% Similarity=0.089 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcC-CeEEEEEe
Q 010314 248 LPCGERRRVRIARELVMRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTG-CTLLFTIN 305 (513)
Q Consensus 248 LSGGqrqRv~IAraL~~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g-~tvi~t~h 305 (513)
.++.++++..+++..+.+|+++|+.-..+..|... ...+++++.+...| .++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999888774334445433 45566777776555 45555443
No 189
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.01 E-value=3.2e-05 Score=78.95 Aligned_cols=43 Identities=7% Similarity=-0.049 Sum_probs=34.6
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---cCCeEEEEEeCC
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLAS---TGCTLLFTINQS 307 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~---~g~tvi~t~h~~ 307 (513)
.+|.||++||+... |......+.+.+.++.. .+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888877665 577888888876
No 190
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.00 E-value=9.9e-07 Score=84.80 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=33.5
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (513)
+..++|++++|.|+||||||||+++|+|+ + |+|.+.+.+
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~---g~v~~~~~~ 53 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----K---NDICLLTEP 53 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----T---TTEEEECCT
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----c---CCeEEEecC
Confidence 34468999999999999999999999997 2 888887764
No 191
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.98 E-value=3.7e-06 Score=79.52 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=27.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 48999999999999999999999999876
No 192
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.89 E-value=1.2e-06 Score=85.64 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=41.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCCceeEEE--------ECCEeCCCC------CceEEEEcCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIA---GRLPHSARMYGEVF--------VNGAKSEMP------YGSYGFVERE 190 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~---G~~~~~~~~~G~I~--------i~G~~~~~~------~~~~~yv~Q~ 190 (513)
.+|++++|+||||||||||+++|+ |+..++ +|.|. .+|.+.... ...+++++|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 589999999999999999999999 987765 48888 777654211 1346667654
No 193
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.88 E-value=2.1e-06 Score=80.67 Aligned_cols=40 Identities=25% Similarity=0.201 Sum_probs=33.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010314 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (513)
Q Consensus 133 i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (513)
..+|++++|+|+||||||||+++|++.+++.+ |.|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~---~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQG---ISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTT---CCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC---CeEEEecc
Confidence 45899999999999999999999999886643 77766543
No 194
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.83 E-value=2.7e-05 Score=77.87 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=25.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 133 i~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.++..+.|.||+|+|||||+++|++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4678899999999999999999999875
No 195
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.82 E-value=3.2e-06 Score=87.61 Aligned_cols=44 Identities=23% Similarity=0.168 Sum_probs=38.5
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEE
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFV 172 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i 172 (513)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 35899999999999999999999999999999999953 276654
No 196
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.81 E-value=1.2e-05 Score=75.36 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=26.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.+.+|.+++|+|+||||||||++.|++.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345899999999999999999999999753
No 197
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.81 E-value=5.2e-06 Score=75.64 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=29.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (513)
.+|++++|+|+||||||||+++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 379999999999999999999999863 56666653
No 198
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.80 E-value=5.5e-06 Score=92.11 Aligned_cols=43 Identities=26% Similarity=0.233 Sum_probs=31.8
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (513)
+.+++|..++|+|++|+|||||++.|++...+. ...|+| .+|.
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~ 46 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGT 46 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTC
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCc
Confidence 456789999999999999999999999765432 124776 4553
No 199
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.77 E-value=6.6e-06 Score=82.53 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHc-CC--eEEEEEeCChHHHHhcCCEE
Q 010314 248 LPCGERRRVRIARELV--MRPHVLFIDEPLYHLDSVS-ALLMMVTLKKLAST-GC--TLLFTINQSSTEVFGLFDRI 318 (513)
Q Consensus 248 LSGGqrqRv~IAraL~--~~P~iLllDEPTsgLD~~~-~~~i~~~L~~l~~~-g~--tvi~t~h~~~~~i~~~~D~v 318 (513)
+++|++ .+++.+. ..|.++++ +.+|... ...+.+.+.++++. |. .+.++.|+. ..+..++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHH
Confidence 888886 5667776 78999999 7899876 67788888888754 43 333433333 3455555544
No 200
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.77 E-value=3.1e-06 Score=85.87 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=34.1
Q ss_pred ceeeeeeeeEEeCCc------EEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 123 DKVVKSSNGYALPGT------MTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge------~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
.+.|++++..+..++ ++||+||||||||||+++|++++..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456777777777766 9999999999999999999999763
No 201
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.73 E-value=5.8e-06 Score=89.80 Aligned_cols=42 Identities=36% Similarity=0.433 Sum_probs=35.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee-EEE-ECCEe
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG-EVF-VNGAK 176 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G-~I~-i~G~~ 176 (513)
.+++|++++|+|+||||||||+++|+|++.+.+ | +|. ++|..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~---G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMG---GRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTC---SSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccC---CceEEEECCcH
Confidence 467999999999999999999999999987753 5 674 77643
No 202
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.73 E-value=0.00011 Score=77.45 Aligned_cols=170 Identities=17% Similarity=0.125 Sum_probs=94.6
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEeCCCCCceEEEEcCCcccCCCCCHHHHH
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAKSEMPYGSYGFVERETTLIGSLTVREYL 203 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~~~~~~~~~~yv~Q~~~l~~~lTV~E~l 203 (513)
.-|+.+.+-+.+|+++.|.|++|+|||||+..++....... | ..+.|+.- .++..+..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~---g-------------~~vl~~sl------E~~~~~l~ 245 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE---G-------------VGVGIYSL------EMPAAQLT 245 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---C-------------CCEEEEES------SSCHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC---C-------------CeEEEEEC------CCCHHHHH
Confidence 45777777799999999999999999999988876532210 1 11223221 12333222
Q ss_pred HH--HHHhcCCCc------h-hhHHHHHHHHHHHcCChhHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh--hCCCEEEEe
Q 010314 204 YY--SALLQLPGF------F-CQRKNVVEDAIHAMSLSDYANKLIGGHCYMKGLPCGERRRVRIARELV--MRPHVLFID 272 (513)
Q Consensus 204 ~~--~~~~~~~~~------~-~~~~~~v~~~l~~~~L~~~~~~~vg~~~~~~~LSGGqrqRv~IAraL~--~~P~iLllD 272 (513)
.- +.....+.. . .+...++.+.++.+.-..+ .+. ...++|..+. .+.++.+. .+|+++++|
T Consensus 246 ~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l---~i~---d~~~~s~~~l--~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 246 LRMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPI---YID---DTPDLTLMEV--RARARRLVSQNQVGLIIID 317 (444)
T ss_dssp HHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCE---EEE---CCTTCBHHHH--HHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCE---EEE---CCCCCCHHHH--HHHHHHHHHHcCCCEEEEc
Confidence 11 111111100 0 1112233333333211111 010 1125676665 34556665 489999999
Q ss_pred CCCCCCCH----------HHHHHHHHHHHHHHHc-CCeEEEEEeCCh------------------HHHHhcCCEEEEEeC
Q 010314 273 EPLYHLDS----------VSALLMMVTLKKLAST-GCTLLFTINQSS------------------TEVFGLFDRICLLSN 323 (513)
Q Consensus 273 EPTsgLD~----------~~~~~i~~~L~~l~~~-g~tvi~t~h~~~------------------~~i~~~~D~v~vL~~ 323 (513)
..+.-.+. .....+.+.|+.++++ +.+||+++|-.. ..+.+.||.|++|+.
T Consensus 318 ~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 318 YLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp CGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred ChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 98764432 1235677888888765 899999766221 024667899998853
No 203
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.72 E-value=1.3e-05 Score=75.57 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=26.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.+|++++|+||||||||||++.|++..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3899999999999999999999999865
No 204
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.72 E-value=1.2e-05 Score=72.93 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.|++++|+|+||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999764
No 205
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.72 E-value=3.6e-05 Score=81.04 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEEC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVN 173 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~ 173 (513)
++.+++++|++|+||||++..|++.+...+ ++|.+-
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G---~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG---YKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT---CCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEE
Confidence 588999999999999999999999876643 556553
No 206
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.67 E-value=3.8e-05 Score=87.18 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=28.7
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
+.+++|+.++|.||||||||||+++|+|.+..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999999999998653
No 207
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.63 E-value=3e-05 Score=72.21 Aligned_cols=51 Identities=16% Similarity=0.036 Sum_probs=30.7
Q ss_pred hCCCEEEEeCCCC-CCCHHHHHHHH-HHHHHHHHcCCeEEEEEeCChHHHHhc
Q 010314 264 MRPHVLFIDEPLY-HLDSVSALLMM-VTLKKLASTGCTLLFTINQSSTEVFGL 314 (513)
Q Consensus 264 ~~P~iLllDEPTs-gLD~~~~~~i~-~~L~~l~~~g~tvi~t~h~~~~~i~~~ 314 (513)
.++++|++||+-. .++...+..++ .++......+..+|++++.+..++...
T Consensus 114 ~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~~ 166 (202)
T 2w58_A 114 KKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHH 166 (202)
T ss_dssp HHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHHH
T ss_pred cCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHH
Confidence 4678999999932 23333344344 455554456677888888876665544
No 208
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.60 E-value=3.3e-05 Score=69.33 Aligned_cols=31 Identities=35% Similarity=0.401 Sum_probs=24.7
Q ss_pred eeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 127 ~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
++.++.+.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3445555555 999999999999999999873
No 209
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.60 E-value=2.6e-05 Score=81.93 Aligned_cols=33 Identities=33% Similarity=0.297 Sum_probs=28.8
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~ 163 (513)
+.+.+|++++|+||||||||||+++|+++..+.
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 446679999999999999999999999988764
No 210
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.56 E-value=9.8e-05 Score=74.16 Aligned_cols=47 Identities=6% Similarity=0.141 Sum_probs=36.0
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChH
Q 010314 263 VMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSST 309 (513)
Q Consensus 263 ~~~P~iLllDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~ 309 (513)
..++.+||+||+-. ..+...+..+...+..+.+.+..+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 35699999999865 234477888999998887778788887776543
No 211
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.51 E-value=1.3e-05 Score=76.94 Aligned_cols=67 Identities=10% Similarity=0.052 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHHHHhcCCE
Q 010314 249 PCGERRRVRIARELVMRPHVLFIDEPLY-HLDSVSALLMMVTLKKLASTGCTLLFTINQSSTEVFGLFDR 317 (513)
Q Consensus 249 SGGqrqRv~IAraL~~~P~iLllDEPTs-gLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~i~~~~D~ 317 (513)
+.|...+.. ...+.+-+++++||.-. ++|......+++.+......-.+++++.+.+...+.++++.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456655553 33578999999999966 68877665555555544333457788777776655566553
No 212
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.50 E-value=0.0016 Score=66.81 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=28.2
Q ss_pred eeeeee--eEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 125 VVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 125 iL~~vs--~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-|+.+- +=+++|+++.|.|++|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 454443 35789999999999999999999888754
No 213
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.46 E-value=0.0003 Score=74.42 Aligned_cols=36 Identities=11% Similarity=0.010 Sum_probs=29.7
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.-|+.+.+=+.+|+++.|.|++|+|||||+--++..
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 356666666889999999999999999998777653
No 214
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.45 E-value=1.3e-05 Score=81.84 Aligned_cols=50 Identities=22% Similarity=0.174 Sum_probs=41.9
Q ss_pred ceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010314 123 DKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (513)
..+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+.+ |+|.+-+.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~---~~v~v~~~ 92 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREG---LKVAVIAV 92 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEEee
Confidence 457889999999999999999999999999999999876543 66665443
No 215
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.45 E-value=2.9e-05 Score=78.88 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
.+..+.|.||+|+|||||++.+++...+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5778999999999999999999987643
No 216
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.44 E-value=3e-05 Score=70.96 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGA 175 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G--~I~i~G~ 175 (513)
+|++++|+|++||||||++++|++.+++. | .|.++|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~----g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCH----GIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT----TCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhC----CCcEEEECCh
Confidence 79999999999999999999999986542 4 5555543
No 217
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.42 E-value=5.4e-05 Score=72.82 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=27.4
Q ss_pred eeeeeeEEe---CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 126 VKSSNGYAL---PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 126 L~~vs~~i~---~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
|.++++.+. +|.+++|.|++||||||+++.|+..+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 455555555 8999999999999999999999998765
No 218
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.37 E-value=0.0016 Score=62.16 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
.++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 3799999999999999999997654
No 219
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.37 E-value=2.3e-05 Score=81.05 Aligned_cols=52 Identities=25% Similarity=0.353 Sum_probs=45.6
Q ss_pred eEEEEeEEEEEeccccccceeee--------------eeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVK--------------SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+.|+|+++.|+. .+..|+ |+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~----er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHAN----SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCC----SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCC----CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 5789999998864 345788 899999999999999999999999999999864
No 220
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.34 E-value=0.00089 Score=67.25 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=28.2
Q ss_pred eeeeee-eEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 125 VVKSSN-GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 125 iL~~vs-~~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
.|+.+- +-+++|+++.|.|++|+|||||+..++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344443 5688999999999999999999988875
No 221
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.28 E-value=3.8e-05 Score=83.30 Aligned_cols=47 Identities=23% Similarity=0.412 Sum_probs=39.1
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G 174 (513)
.++.++++.+ +|+.++|+||||+|||||+++|++.+.+. .|.|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 4677777777 89999999999999999999999987654 37776655
No 222
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.27 E-value=5.8e-05 Score=77.30 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (513)
++.+++|+|++|||||||++.|+|.+.+.+ |+|.+.+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~---~~v~V~~~d 111 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERG---HKLSVLAVD 111 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcC---CeEEEEeec
Confidence 578999999999999999999999876653 777665543
No 223
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.24 E-value=0.00014 Score=68.76 Aligned_cols=25 Identities=40% Similarity=0.610 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.+++|+|+|||||||++++|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999865
No 224
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.22 E-value=0.00017 Score=67.87 Aligned_cols=31 Identities=32% Similarity=0.307 Sum_probs=24.6
Q ss_pred eeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 128 ~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+.++.+.+ .+++|+|||||||||++++|.-.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHH
Confidence 44555555 49999999999999999998643
No 225
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.19 E-value=0.00054 Score=64.57 Aligned_cols=44 Identities=11% Similarity=0.073 Sum_probs=30.9
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHcCCe-EEEEEeCC
Q 010314 264 MRPHVLFIDEPLYHL-DSVSALLMMVTLKKLASTGCT-LLFTINQS 307 (513)
Q Consensus 264 ~~P~iLllDEPTsgL-D~~~~~~i~~~L~~l~~~g~t-vi~t~h~~ 307 (513)
.+|.+|++||.-.-- +......+.+.+..+.+.+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 468999999965432 233477788888888766665 77777654
No 226
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.19 E-value=0.00013 Score=68.22 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=25.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.+|.+++|+||||||||||.+.|+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4799999999999999999999998764
No 227
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.18 E-value=0.00046 Score=62.49 Aligned_cols=26 Identities=50% Similarity=0.718 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+|..++|+|++|+|||||++.|+|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67889999999999999999999964
No 228
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.14 E-value=6.8e-05 Score=70.66 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=32.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCcee--EEEECCE
Q 010314 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYG--EVFVNGA 175 (513)
Q Consensus 133 i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G--~I~i~G~ 175 (513)
+.+|.+++|+|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 4589999999999999999999999987643 26 6666653
No 229
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.08 E-value=0.00025 Score=65.25 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=26.1
Q ss_pred eeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 128 ~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777778999999999999999999999975
No 230
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.06 E-value=0.00023 Score=65.61 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=29.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCE
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGA 175 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~ 175 (513)
.+++|+|+||||||||++.|.+.++..+..-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 578999999999999999999876543223467766543
No 231
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.05 E-value=0.00061 Score=71.71 Aligned_cols=39 Identities=36% Similarity=0.525 Sum_probs=30.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC------C---CCceeEEEECCEe
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLPH------S---ARMYGEVFVNGAK 176 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~~------~---~~~~G~I~i~G~~ 176 (513)
.++|+|+||+|||||++.|+|.... + ....|.+.++|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 7999999999999999999998531 0 0235889999875
No 232
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.04 E-value=0.0024 Score=65.18 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+..-+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 356679999999999999999999764
No 233
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.03 E-value=0.00065 Score=62.45 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=20.9
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.+++++++..++. .++|+|++|+|||||++.+.+-
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4778888887777 5689999999999999999984
No 234
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.01 E-value=0.00095 Score=65.31 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++.-+.|.||+|+|||||+++|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 356679999999999999999999864
No 235
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.01 E-value=0.00029 Score=65.53 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 010314 138 MTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G 158 (513)
+++|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
No 236
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.99 E-value=0.00021 Score=65.69 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=26.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~ 163 (513)
.+|.+++|+|++||||||+.+.|++.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999999987543
No 237
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.98 E-value=0.00018 Score=75.66 Aligned_cols=45 Identities=16% Similarity=0.081 Sum_probs=38.2
Q ss_pred eeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010314 127 KSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (513)
Q Consensus 127 ~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (513)
+++++. +|++++|+|+|||||||++..|++.+.+.+ |+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g---~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEeecc
Confidence 567777 899999999999999999999999987754 788776544
No 238
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.94 E-value=0.011 Score=60.82 Aligned_cols=27 Identities=41% Similarity=0.512 Sum_probs=24.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
-+++|+++.|.|++|+|||||+..++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 578999999999999999999877764
No 239
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.89 E-value=0.00023 Score=69.13 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=32.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (513)
...++.++.|+|+|||||||+.+.|+..+.. |.+.+++..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHH
Confidence 4557889999999999999999999987642 556777643
No 240
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.89 E-value=0.005 Score=65.79 Aligned_cols=35 Identities=17% Similarity=0.054 Sum_probs=28.2
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
.-|+.+.+-+.+|+++.|.|++|+|||||+--++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 34555545589999999999999999999876664
No 241
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.89 E-value=0.00079 Score=69.24 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=26.4
Q ss_pred eeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHH
Q 010314 126 VKSSNGYALPGTMTVIMGPAKSGKSTLLRAIA 157 (513)
Q Consensus 126 L~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~ 157 (513)
+++..+.+.+| +++|.|+|||||||++.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46667777664 99999999999999999986
No 242
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.88 E-value=0.0038 Score=59.92 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+..-+.|.||+|+|||||+++|+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34458899999999999999999854
No 243
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.86 E-value=0.00015 Score=74.14 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=33.6
Q ss_pred eeeeeeeeEEeCCcE--EEEEcCCCCcHHHHHHHHHcCC
Q 010314 124 KVVKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~--~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478888888999998 9999999999999999999875
No 244
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.83 E-value=0.00016 Score=72.44 Aligned_cols=46 Identities=17% Similarity=0.119 Sum_probs=36.6
Q ss_pred ee-eeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECCEe
Q 010314 127 KS-SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNGAK 176 (513)
Q Consensus 127 ~~-vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G~~ 176 (513)
++ +++..+ |++++++|++|+||||++..|++.+.+.+ |+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g---~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKG---FKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTT---CCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEecC
Confidence 45 677665 99999999999999999999999886643 667665443
No 245
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.82 E-value=0.00081 Score=67.48 Aligned_cols=53 Identities=19% Similarity=0.065 Sum_probs=31.2
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHH-HHHHHHHcCCeEEEEEeCChHHHHhcC
Q 010314 263 VMRPHVLFIDEPLY-HLDSVSALLMMV-TLKKLASTGCTLLFTINQSSTEVFGLF 315 (513)
Q Consensus 263 ~~~P~iLllDEPTs-gLD~~~~~~i~~-~L~~l~~~g~tvi~t~h~~~~~i~~~~ 315 (513)
+.+++|||+||.-. .++...+..++. +|......++.+|+|++.+..++...+
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~~ 266 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERKW 266 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTTC
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence 45789999999832 344444444554 555543456678888887766665543
No 246
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.80 E-value=0.00031 Score=65.14 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=30.6
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.+++++++..+++. ++|+|++|+|||||++.+.+-
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 57888888888875 689999999999999999873
No 247
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.80 E-value=0.00053 Score=63.78 Aligned_cols=25 Identities=40% Similarity=0.405 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999864
No 248
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.75 E-value=0.009 Score=60.05 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+..-+.|.||+|+|||||+++++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 355678999999999999999999865
No 249
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.75 E-value=0.0014 Score=62.90 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=42.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEe---------CChHHHHhcCCEEEEEe
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN---------QSSTEVFGLFDRICLLS 322 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h---------~~~~~i~~~~D~v~vL~ 322 (513)
+|+++++||--- |+. .+++.++.+++.|..||++-| .....+..+||+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 355666777777999999988 56678889999999875
No 250
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.74 E-value=0.00069 Score=61.78 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+|.+++|+|++||||||+.+.|+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999999999854
No 251
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.72 E-value=0.00082 Score=60.12 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.++|+|++|+|||||++.|+|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999643
No 252
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.69 E-value=0.00096 Score=60.38 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 253
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.67 E-value=0.00091 Score=59.87 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 254
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.66 E-value=0.00023 Score=72.00 Aligned_cols=40 Identities=20% Similarity=0.449 Sum_probs=34.9
Q ss_pred ceeeeeeeeEEeCCcE--EEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 123 DKVVKSSNGYALPGTM--TVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 123 ~~iL~~vs~~i~~Ge~--~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
..+++.++..++.|++ +.+.||+|+|||||++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3577788888889988 999999999999999999998654
No 255
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.61 E-value=0.00093 Score=69.45 Aligned_cols=45 Identities=20% Similarity=0.122 Sum_probs=31.8
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CC---CCceeEEEECCE
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGRLP-----HS---ARMYGEVFVNGA 175 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~-----~~---~~~~G~I~i~G~ 175 (513)
+.+..|..++|+|+||+|||||+++|+|... |. ....|.|.+.|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3455788899999999999999999999721 00 112488877663
No 256
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.60 E-value=0.0011 Score=63.50 Aligned_cols=26 Identities=42% Similarity=0.525 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.+|.+++|+|++||||||+.+.|++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999999984
No 257
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.55 E-value=0.00083 Score=64.91 Aligned_cols=32 Identities=34% Similarity=0.585 Sum_probs=23.3
Q ss_pred eeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 128 SSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 128 ~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
++++.+.+| +.|.||+|+|||||+++|++...
T Consensus 39 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 39 KLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 333334444 88999999999999999998753
No 258
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.51 E-value=0.0014 Score=59.62 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
|.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6689999999999999999998754
No 259
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.50 E-value=0.0024 Score=64.68 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+..+.|.||+|+|||||++.++...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 56679999999999999999999765
No 260
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.49 E-value=0.00023 Score=73.11 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=33.3
Q ss_pred eEEEEeEEEEEeccccccceeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 105 SVVWKDLTVTIKGKRRYSDKVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 105 ~l~~~~ls~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
.+.+.+|+..+ ..+.+++++++.| +|+|++|+|||||++.|.|....
T Consensus 17 ~v~~~~l~~~~-----~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 17 YVGFANLPNQV-----HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp ----CCHHHHH-----HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-
T ss_pred eEEeccchHHh-----CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCC
Confidence 46677776554 2345788888876 99999999999999999887443
No 261
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.48 E-value=0.0013 Score=59.55 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
No 262
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.48 E-value=0.0012 Score=60.11 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999964
No 263
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.43 E-value=0.0015 Score=62.99 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999653
No 264
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.42 E-value=0.0016 Score=64.58 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCceeEEEECC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPHSARMYGEVFVNG 174 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~~~~~~G~I~i~G 174 (513)
.|.++.|.||||||||||.+.|+..++. |.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~-----~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEec
Confidence 5789999999999999999999876532 5566665
No 265
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.42 E-value=0.0015 Score=59.67 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+|.++.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999999864
No 266
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.41 E-value=0.0015 Score=63.50 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+++|+||||||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999999854
No 267
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.38 E-value=0.0017 Score=57.77 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 010314 138 MTVIMGPAKSGKSTLLRAI 156 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L 156 (513)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 268
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.35 E-value=0.0067 Score=73.36 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=26.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 132 YALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 132 ~i~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
=+.+|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 58999999999999999999999998754
No 269
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.32 E-value=0.0021 Score=58.52 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998653
No 270
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.31 E-value=0.011 Score=60.26 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++.-+.|.||+|+|||||+++|+...
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 44558899999999999999999864
No 271
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.31 E-value=0.0019 Score=60.14 Aligned_cols=24 Identities=46% Similarity=0.729 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999987644
No 272
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.26 E-value=0.00097 Score=64.02 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=49.4
Q ss_pred HHHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHcCCeEEEEEeC--C-------------------hHHHHhcCCE
Q 010314 260 RELVMRPHVLFIDEPLYH-LDSVSALLMMVTLKKLASTGCTLLFTINQ--S-------------------STEVFGLFDR 317 (513)
Q Consensus 260 raL~~~P~iLllDEPTsg-LD~~~~~~i~~~L~~l~~~g~tvi~t~h~--~-------------------~~~i~~~~D~ 317 (513)
.+|..+|+++++||+-.- .+.......++.+..+...|..++.|+|- . .+.+++.||.
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~ 158 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFD 158 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSE
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCe
Confidence 334468999999997642 34333333444445555678888888871 1 1234556777
Q ss_pred EEEEeCCeEEEEeChHHHHHHhHhcCCCCC
Q 010314 318 ICLLSNGNTLFFGETLACLQHFSNAGFPCP 347 (513)
Q Consensus 318 v~vL~~G~iv~~G~~~~~~~~f~~~g~~~~ 347 (513)
|.+++ -+|++++..+.+-....|
T Consensus 159 v~lvD-------~~p~~l~~rl~~g~vy~~ 181 (228)
T 2r8r_A 159 LVLID-------LPPRELLERLRDGKVYVP 181 (228)
T ss_dssp EEEBC-------CCHHHHHHHHHTTCCCCT
T ss_pred EEEec-------CCHHHHHHHHHCCCccCh
Confidence 66654 478887777765444444
No 273
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.26 E-value=0.0023 Score=60.13 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999997
No 274
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.26 E-value=0.0022 Score=58.93 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999854
No 275
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.23 E-value=0.0026 Score=58.67 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 276
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.23 E-value=0.0022 Score=58.30 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.+.++.|+|++||||||+.+.|+-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999854
No 277
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.21 E-value=0.0027 Score=58.80 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999986543
No 278
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.20 E-value=0.0026 Score=57.29 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G 158 (513)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999987
No 279
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.13 E-value=0.0027 Score=57.51 Aligned_cols=23 Identities=52% Similarity=0.573 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999753
No 280
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.13 E-value=0.0028 Score=58.01 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
++.+++|+|++||||||+.+.|+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 6779999999999999999999864
No 281
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.13 E-value=0.0029 Score=58.75 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+|.+++|.|++||||||+.+.|+-.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999998643
No 282
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.12 E-value=0.002 Score=59.00 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
.+++|+|++|||||||+..|+..++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987654
No 283
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.07 E-value=0.0032 Score=57.96 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999999985
No 284
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.06 E-value=0.0015 Score=60.91 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987643
No 285
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.04 E-value=0.013 Score=62.60 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=23.7
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 133 ALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 133 i~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.+..-+.|.||+|+|||+|+++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455668999999999999999998754
No 286
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.03 E-value=0.0034 Score=58.31 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+|.+++|.|++||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998653
No 287
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.02 E-value=0.0037 Score=56.95 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+.+++|.|++||||||+.+.|+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999854
No 288
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.01 E-value=0.0033 Score=57.17 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987643
No 289
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.99 E-value=0.055 Score=65.51 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=28.8
Q ss_pred eeeeeee--eEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 124 KVVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 124 ~iL~~vs--~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.-|+.+- +=+++|.++.|.||+|+|||||+-.++..
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3455554 35889999999999999999998777653
No 290
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.91 E-value=0.044 Score=56.26 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++.-+.|.||+|+|||+|+++|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 56789999999999999999998764
No 291
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.91 E-value=0.0034 Score=61.35 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999974
No 292
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.82 E-value=0.0052 Score=57.78 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+|-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 57789999999999999999998643
No 293
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.81 E-value=0.0048 Score=56.58 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998753
No 294
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.80 E-value=0.0045 Score=57.15 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999854
No 295
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.78 E-value=0.005 Score=56.32 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 296
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.75 E-value=0.0032 Score=64.91 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=35.7
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHcCCeEEEEEeCCh
Q 010314 265 RPHVLFIDEPLYHLD---SVSALLMMVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 265 ~P~iLllDEPTsgLD---~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
.|.++++||-=.-++ +.....+.+.+++.++.|..+++++|.+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 588999999887774 66777888888888888888888777764
No 297
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.74 E-value=0.0038 Score=56.53 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=18.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
No 298
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.70 E-value=0.005 Score=55.98 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.|++..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 299
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.69 E-value=0.0086 Score=60.19 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=30.4
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
..+++....+ .|.-++|+|+||+|||||...|.+.
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 5677776666 7889999999999999999999885
No 300
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.67 E-value=0.0057 Score=57.88 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++.+++|+|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
No 301
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.64 E-value=0.007 Score=55.98 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.+-+++|+|++||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999999864
No 302
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.64 E-value=0.006 Score=54.10 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37999999999999999999864
No 303
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.64 E-value=0.0055 Score=53.87 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999999853
No 304
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.60 E-value=0.0063 Score=56.82 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++|+|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999754
No 305
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.60 E-value=0.0064 Score=53.56 Aligned_cols=22 Identities=23% Similarity=0.364 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999985
No 306
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.58 E-value=0.0091 Score=58.71 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999964
No 307
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.57 E-value=0.014 Score=53.08 Aligned_cols=21 Identities=33% Similarity=0.374 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.+.+-
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999766654
No 308
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.57 E-value=0.0068 Score=55.17 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 309
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.56 E-value=0.0073 Score=54.09 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~ 159 (513)
++++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999864
No 310
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.55 E-value=0.0052 Score=54.15 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 7899999999999999998764
No 311
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.55 E-value=0.0059 Score=54.67 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+++|.|++||||||+.+.|+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 312
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.54 E-value=0.0064 Score=53.18 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998653
No 313
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.54 E-value=0.0059 Score=53.28 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++++|+.|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998763
No 314
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.54 E-value=0.0065 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999864
No 315
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.53 E-value=0.0064 Score=53.25 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999753
No 316
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.51 E-value=0.0076 Score=55.69 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
..+++|.|++||||||+.+.|+-.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999864
No 317
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.51 E-value=0.006 Score=55.48 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 318
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.51 E-value=0.0071 Score=53.40 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
No 319
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.50 E-value=0.0061 Score=57.39 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+.++.|+|++||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998643
No 320
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.47 E-value=0.007 Score=53.30 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|+.|+|||||++.+.+..
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7999999999999999999875
No 321
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.46 E-value=0.0075 Score=56.36 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997643
No 322
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.46 E-value=0.0071 Score=53.36 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999763
No 323
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.45 E-value=0.098 Score=54.96 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
++.+++++|++|+||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999977654
No 324
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.45 E-value=0.0077 Score=54.66 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+.+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 325
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.45 E-value=0.0082 Score=53.52 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 326
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.44 E-value=0.0072 Score=53.14 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998764
No 327
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.44 E-value=0.0065 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998863
No 328
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.41 E-value=0.0074 Score=52.98 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998753
No 329
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.41 E-value=0.0075 Score=53.77 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998864
No 330
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.41 E-value=0.0075 Score=53.68 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+-.
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7999999999999999999753
No 331
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.40 E-value=0.0069 Score=53.35 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999999864
No 332
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.38 E-value=0.0063 Score=55.14 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 333
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.36 E-value=0.0072 Score=54.91 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
No 334
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.36 E-value=0.013 Score=60.12 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
|-.++|+|.+|+|||||++.|+|-
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 345899999999999999999994
No 335
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.35 E-value=0.011 Score=52.74 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.-.++|+|++|+|||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999999853
No 336
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.34 E-value=0.1 Score=64.05 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=28.5
Q ss_pred eeeeee--eEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 125 VVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 125 iL~~vs--~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-|+.+- +=+++|.++.|.||+|+|||||+..++..
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~ 406 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 455554 35899999999999999999998877654
No 337
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.34 E-value=0.0075 Score=53.69 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999986
No 338
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.34 E-value=0.0094 Score=57.90 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999998753
No 339
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.32 E-value=0.0097 Score=57.25 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
++-+++|+|++||||||+.+.|+-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999854
No 340
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.32 E-value=0.0075 Score=54.50 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999874
No 341
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.31 E-value=0.0084 Score=57.84 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
-++|+|.+|+|||||++.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 379999999999999999999743
No 342
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.29 E-value=0.009 Score=57.59 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998743
No 343
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.27 E-value=0.0087 Score=54.16 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|+.|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999999864
No 344
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.26 E-value=0.0089 Score=52.53 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|+.|+|||||++.+.+-
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999974
No 345
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.24 E-value=0.0091 Score=53.65 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999999764
No 346
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.24 E-value=0.0083 Score=54.05 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 7899999999999999999864
No 347
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.23 E-value=0.01 Score=52.88 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999999753
No 348
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.21 E-value=0.0092 Score=53.71 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999753
No 349
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.21 E-value=0.01 Score=55.22 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-+++|+|+.||||||+.+.|+-.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999864
No 350
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.20 E-value=0.0094 Score=52.59 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 351
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.19 E-value=0.0093 Score=54.20 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999999853
No 352
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.16 E-value=0.0099 Score=52.15 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999864
No 353
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.14 E-value=0.011 Score=58.34 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLPHS 163 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~~~ 163 (513)
...+.|.||+|+|||||+++|++.....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 4689999999999999999999986543
No 354
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.13 E-value=0.017 Score=54.38 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.|..++|+||+|+|||||...|+..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 6888999999999999999999875
No 355
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.12 E-value=0.011 Score=53.50 Aligned_cols=24 Identities=42% Similarity=0.630 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
++|+|++|+|||||++.|.|....
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEECCCCCCHHHHHHHHHhhccc
Confidence 789999999999999999997543
No 356
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.10 E-value=0.013 Score=52.32 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999998764
No 357
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.10 E-value=0.0097 Score=52.85 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999875
No 358
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.09 E-value=0.011 Score=52.84 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999998864
No 359
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.09 E-value=0.011 Score=53.01 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 21 i~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhhCC
Confidence 7899999999999999999753
No 360
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.06 E-value=0.011 Score=52.51 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|+.|+|||||++.|.+..
T Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999999864
No 361
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.03 E-value=0.0067 Score=54.42 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
.-.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
No 362
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.03 E-value=0.011 Score=53.46 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|++..
T Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999999763
No 363
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.01 E-value=0.0065 Score=60.32 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=19.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++-+++|.|++||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999998743
No 364
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.00 E-value=0.013 Score=55.48 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+++|.|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 365
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.00 E-value=0.012 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999864
No 366
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.00 E-value=0.012 Score=58.59 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|.+|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999863
No 367
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.98 E-value=0.013 Score=55.12 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+|-.++|+|+.||||||+.+.|+-.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999998653
No 368
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.97 E-value=0.012 Score=58.04 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999984
No 369
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.97 E-value=0.02 Score=58.03 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++.+++|+||+|||||||...|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56689999999999999999999865
No 370
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.97 E-value=0.011 Score=57.42 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|.+|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999973
No 371
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.95 E-value=0.0099 Score=58.10 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|.+|+|||||++.|.|..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998763
No 372
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.94 E-value=0.012 Score=54.70 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
No 373
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.92 E-value=0.012 Score=52.96 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998764
No 374
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.91 E-value=0.012 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 375
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.89 E-value=0.014 Score=58.35 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|.+|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999963
No 376
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.89 E-value=0.013 Score=53.16 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 25 i~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999999864
No 377
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.88 E-value=0.013 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999864
No 378
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.87 E-value=0.013 Score=53.10 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7999999999999999999864
No 379
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.84 E-value=0.013 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.|.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999984
No 380
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.81 E-value=0.014 Score=52.37 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+..
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999999763
No 381
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.81 E-value=0.01 Score=54.58 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3799999999999999999764
No 382
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.81 E-value=0.013 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999863
No 383
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.80 E-value=0.013 Score=52.70 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.--++|+|++|+|||||++.+.+-.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999999764
No 384
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.80 E-value=0.013 Score=53.40 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|+.|+|||||++.|.+..
T Consensus 26 i~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999999864
No 385
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.80 E-value=0.014 Score=52.21 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
No 386
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.77 E-value=0.013 Score=60.27 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.|+|.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999986
No 387
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.77 E-value=0.015 Score=54.42 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++|+|++||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999864
No 388
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.76 E-value=0.015 Score=53.19 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7999999999999999999864
No 389
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.76 E-value=0.014 Score=56.24 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
No 390
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.76 E-value=0.015 Score=55.41 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+..++.|+||+||||+|..+.|+-.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999864
No 391
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.74 E-value=0.018 Score=54.65 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+..+.|+|+.||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998653
No 392
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.74 E-value=0.016 Score=57.05 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++.|+|++||||||+.+.|+-.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999863
No 393
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.72 E-value=0.015 Score=56.45 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|.+|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999853
No 394
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.71 E-value=0.015 Score=52.62 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.+.+-
T Consensus 23 i~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999875
No 395
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.71 E-value=0.015 Score=54.19 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
No 396
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.68 E-value=0.015 Score=53.27 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|.+|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999973
No 397
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.68 E-value=0.019 Score=54.34 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
+|.+++|.|++||||||+++.|+..+..
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876644
No 398
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.68 E-value=0.014 Score=53.56 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 37899999999999999999864
No 399
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.65 E-value=0.015 Score=56.94 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|.+|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999863
No 400
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.64 E-value=0.015 Score=52.88 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+..
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 7899999999999999999864
No 401
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.64 E-value=0.016 Score=51.67 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 402
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.63 E-value=0.015 Score=53.15 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 403
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.63 E-value=0.016 Score=52.63 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999754
No 404
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.62 E-value=0.015 Score=52.00 Aligned_cols=22 Identities=27% Similarity=0.301 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999854
No 405
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.61 E-value=0.016 Score=53.25 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.|.+.
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 789999999999999999875
No 406
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.61 E-value=0.016 Score=51.76 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 355678999999999999999987653
No 407
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.59 E-value=0.017 Score=52.25 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-.++|+|++|+|||||++.+.+-
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999964
No 408
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.58 E-value=0.0085 Score=55.82 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999874
No 409
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.58 E-value=0.016 Score=55.51 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=21.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.+|.+++|.|++||||||+++.|+..+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3788999999999999999999987653
No 410
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.58 E-value=0.017 Score=52.43 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|+.|+|||||++.|.+-.
T Consensus 25 i~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999999753
No 411
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.58 E-value=0.017 Score=52.17 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|+.|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999999864
No 412
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.56 E-value=0.017 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999753
No 413
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.55 E-value=0.017 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|.+-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999753
No 414
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.55 E-value=0.017 Score=52.51 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999864
No 415
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.55 E-value=0.016 Score=52.58 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|.+|+|||||++.+.+-.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998853
No 416
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.55 E-value=0.016 Score=53.29 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999854
No 417
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.55 E-value=0.018 Score=60.06 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
....++.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999999999864
No 418
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.54 E-value=0.013 Score=53.21 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998864
No 419
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.52 E-value=0.019 Score=58.40 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 378999999999999999999865
No 420
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.52 E-value=0.016 Score=53.68 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+..
T Consensus 29 i~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7999999999999999988653
No 421
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.51 E-value=0.017 Score=54.41 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++|+|++|+|||||++.|.|.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999875
No 422
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.51 E-value=0.019 Score=53.18 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999864
No 423
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.51 E-value=0.018 Score=52.78 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|+.|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999999864
No 424
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.50 E-value=0.016 Score=52.26 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999975
No 425
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.49 E-value=0.017 Score=57.17 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|..|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 426
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.49 E-value=0.098 Score=49.55 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=43.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEe---------CChHHHHhcCCEEEEEe
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTIN---------QSSTEVFGLFDRICLLS 322 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h---------~~~~~i~~~~D~v~vL~ 322 (513)
+.+++++||--- ||.. +++.|+.+++.|..||++-+ ..+..+..+||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999866 6543 33677777777999999888 77888999999999885
No 427
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.45 E-value=0.021 Score=54.96 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
+|.+++|.|++||||||+++.|+..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6889999999999999999999876643
No 428
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.40 E-value=0.015 Score=51.84 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999875
No 429
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.39 E-value=0.021 Score=52.12 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 430
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.38 E-value=0.019 Score=53.11 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999854
No 431
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.37 E-value=0.022 Score=52.13 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
-++|+|.+|+|||||++.+.|...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999998644
No 432
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.35 E-value=0.021 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+-.
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCcHHHHHHHHHhCC
Confidence 7899999999999999988753
No 433
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.34 E-value=0.026 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+.|.||+|+|||||++.++...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998754
No 434
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.33 E-value=0.029 Score=53.01 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=39.7
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHHc-CCeEEEEEeCChH---------HHHhcCCEEEEEe
Q 010314 263 VMRPHVLFIDEPLY----HLDSVSALLMMVTLKKLAST-GCTLLFTINQSST---------EVFGLFDRICLLS 322 (513)
Q Consensus 263 ~~~P~iLllDEPTs----gLD~~~~~~i~~~L~~l~~~-g~tvi~t~h~~~~---------~i~~~~D~v~vL~ 322 (513)
-.+|+++++|--+. .-|.....+++..|+.++++ +.+++++.|.... .+...+|-|+.|+
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 45889999995432 11445566777888887754 9999997765321 1345689888884
No 435
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.32 E-value=0.021 Score=53.30 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+-+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999998854
No 436
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.31 E-value=0.025 Score=56.87 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.+++|+||+|||||||...|+-..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999999764
No 437
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.30 E-value=0.021 Score=53.13 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3799999999999999999974
No 438
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.29 E-value=0.02 Score=53.25 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+..
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999999864
No 439
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.28 E-value=0.025 Score=59.83 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=29.0
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++++.+ ..+-+|+.++|+|+||+|||||++.|+...
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 345555 445589999999999999999999998754
No 440
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.26 E-value=0.023 Score=57.27 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999864
No 441
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.26 E-value=0.022 Score=52.73 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 442
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.26 E-value=0.044 Score=50.33 Aligned_cols=26 Identities=35% Similarity=0.391 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
..|.-++|.|+||+|||||...|...
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 36888999999999999999988763
No 443
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.23 E-value=0.026 Score=53.38 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
+|.++.|.|++||||||+++.|...+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999877643
No 444
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.23 E-value=0.025 Score=53.19 Aligned_cols=22 Identities=32% Similarity=0.598 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
++.|+||+||||+|..+.|+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999864
No 445
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.22 E-value=0.02 Score=56.09 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|.+|+|||||++.|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 446
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.20 E-value=0.026 Score=53.80 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
|.+++|.|+.||||||+++.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998653
No 447
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.16 E-value=0.015 Score=52.16 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=9.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999865
No 448
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.15 E-value=0.022 Score=52.35 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.+.+-.
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999999853
No 449
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.15 E-value=0.14 Score=62.86 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=31.8
Q ss_pred cceeeeeee--eEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 122 SDKVVKSSN--GYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 122 ~~~iL~~vs--~~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
+...|+++. +-+++|+.+.|.||+|||||||...+.-
T Consensus 1065 Gi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1065 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345678887 5899999999999999999999998763
No 450
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.14 E-value=0.028 Score=53.37 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLPH 162 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~~ 162 (513)
+|.++.|.|++||||||+++.|+-.+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6889999999999999999999987654
No 451
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.10 E-value=0.021 Score=52.23 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~ 159 (513)
--++|+|++|+|||||++.+.+-
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999764
No 452
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.05 E-value=0.025 Score=54.84 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|.+|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
No 453
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.05 E-value=0.024 Score=51.42 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.+.+-
T Consensus 21 i~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 21 CVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999975
No 454
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.03 E-value=0.032 Score=53.26 Aligned_cols=27 Identities=26% Similarity=0.243 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 688999999999999999999987654
No 455
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.02 E-value=0.2 Score=48.05 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=44.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeC---------ChHHHHhcCCEEEEEe
Q 010314 264 MRPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQ---------SSTEVFGLFDRICLLS 322 (513)
Q Consensus 264 ~~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~---------~~~~i~~~~D~v~vL~ 322 (513)
.+.+++++||----.| +.++++.+.+.|..||++-++ ....+..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999887654 666666667789999999998 7888999999999885
No 456
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.00 E-value=0.0099 Score=59.54 Aligned_cols=42 Identities=10% Similarity=0.126 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCCh
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSS 308 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~ 308 (513)
+++|||+|| ...|++..+..+++.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888888877543 334555566553
No 457
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.99 E-value=0.025 Score=54.99 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 458
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.95 E-value=0.0086 Score=57.85 Aligned_cols=22 Identities=36% Similarity=0.762 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.|.||+|+|||||+++|+...
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7799999999999999999853
No 459
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.94 E-value=0.011 Score=67.10 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=29.0
Q ss_pred eeeEEeCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 129 SNGYALPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 129 vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
.++.+.+|+.++|.||+|+|||||+++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 355677899999999999999999999999763
No 460
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.93 E-value=0.03 Score=52.66 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999974
No 461
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.84 E-value=0.029 Score=52.37 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-.++|+|.+|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
No 462
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.80 E-value=0.021 Score=55.30 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++.+++|.|+.||||||+.+.|+..+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 67789999999999999999998765
No 463
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.76 E-value=0.014 Score=54.22 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~ 159 (513)
++|+|++|+|||||++.|++.
T Consensus 14 i~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 14 ICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEECCTTSSHHHHHCBCTTC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999865
No 464
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.73 E-value=0.032 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999864
No 465
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.73 E-value=0.03 Score=51.56 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|+.|+|||||++.+.+..
T Consensus 32 i~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhhCC
Confidence 7899999999999999998753
No 466
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.61 E-value=0.041 Score=55.17 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999999764
No 467
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.60 E-value=0.036 Score=54.13 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
-.++|+|.+|+|||||++.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999999754
No 468
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.57 E-value=0.015 Score=53.23 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=4.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.|.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999875
No 469
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.57 E-value=0.021 Score=51.56 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~ 159 (513)
--++|+|++|+|||||++.+.+-
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999653
No 470
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.56 E-value=0.038 Score=48.44 Aligned_cols=43 Identities=16% Similarity=0.109 Sum_probs=30.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCChHH
Q 010314 266 PHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQSSTE 310 (513)
Q Consensus 266 P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~~~~ 310 (513)
..+|++||.- .|++..+..+++.|... .....+|++++.+..+
T Consensus 77 ~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~~ 119 (145)
T 3n70_A 77 GGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLVE 119 (145)
T ss_dssp TSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHHH
T ss_pred CcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHHH
Confidence 4689999984 68888888888888332 2245677777776543
No 471
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.54 E-value=0.029 Score=59.03 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++|+|.+|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999999984
No 472
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.52 E-value=0.033 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 473
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.48 E-value=0.037 Score=51.62 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3789999999999999999875
No 474
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.41 E-value=0.036 Score=51.12 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
-++|+|++|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
No 475
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.40 E-value=0.044 Score=53.82 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
++..+.|.||+|+|||||+++++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 566789999999999999999887653
No 476
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.34 E-value=0.042 Score=57.02 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+++|+||+|||||||...|+-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998754
No 477
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.31 E-value=0.051 Score=54.80 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=25.9
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 131 GYALPGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 131 ~~i~~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+-+.+|.++.|.||+|+|||||...++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 56888999999999999999999998753
No 478
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.28 E-value=0.12 Score=54.96 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=52.0
Q ss_pred CCCCCHHHHHHHHHHHHHh--h---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCC
Q 010314 245 MKGLPCGERRRVRIARELV--M---------------RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS 307 (513)
Q Consensus 245 ~~~LSGGqrqRv~IAraL~--~---------------~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~ 307 (513)
..++||||+|-.-+|.+.. . .-.+++|||. +-+|.......++++++| |.-+|+++-.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 3579999999654444333 2 2258999999 999999999999999976 5555654432
Q ss_pred hHHHHhcCCEEEEEe
Q 010314 308 STEVFGLFDRICLLS 322 (513)
Q Consensus 308 ~~~i~~~~D~v~vL~ 322 (513)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 4567788888774
No 479
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.23 E-value=0.045 Score=50.01 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.|.||.|+|||||++.++..+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998754
No 480
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.07 E-value=0.056 Score=49.70 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=37.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEeCC---------hHHHHhcCCEEEEEe
Q 010314 265 RPHVLFIDEPLYHLDSVSALLMMVTLKKLASTGCTLLFTINQS---------STEVFGLFDRICLLS 322 (513)
Q Consensus 265 ~P~iLllDEPTsgLD~~~~~~i~~~L~~l~~~g~tvi~t~h~~---------~~~i~~~~D~v~vL~ 322 (513)
+++++++||--- +++ .+++.|+.+++.|..||++-+.. ...+..++|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 443 36667777777788999887732 244566788887664
No 481
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.97 E-value=0.052 Score=52.07 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.+||+|+.||||||+.+.|+-.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 482
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.95 E-value=0.053 Score=53.56 Aligned_cols=25 Identities=20% Similarity=0.174 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
...+.|.||+|+|||+|.++|+..+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467788999999999999999764
No 483
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.83 E-value=0.054 Score=52.42 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
+...+.|.||+|+|||||+++|+..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4456889999999999999999975
No 484
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.71 E-value=0.065 Score=53.48 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+..-+.|.||+|+|||+|+++|+...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45568999999999999999999753
No 485
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.70 E-value=0.06 Score=54.22 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
+|..+.|.||+|+|||||++.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 567899999999999999999998764
No 486
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.55 E-value=0.062 Score=52.46 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+.-+.|.||+|+|||||++.|+..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4457899999999999999999865
No 487
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.55 E-value=0.061 Score=54.64 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
..-+++|+|+.|+|||||++.|++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999987653
No 488
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.54 E-value=0.06 Score=54.61 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++.-+.|.||+|+||||+.++|+..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45568899999999999999999875
No 489
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.47 E-value=0.071 Score=52.54 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
+-.++|+|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999974
No 490
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.56 E-value=0.024 Score=52.00 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
-++|+|++|+|||||++.+.+-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4899999999999999988753
No 491
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=92.31 E-value=0.063 Score=55.64 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|.+++|||||++.|.|..
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999864
No 492
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.19 E-value=0.074 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 010314 137 TMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 137 e~~aliGpsGsGKSTLl~~L~G~ 159 (513)
--++|+|++|+|||||++.+.+-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998876
No 493
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.18 E-value=0.14 Score=51.29 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=26.1
Q ss_pred eeeeeeeeEEeCCcEEEEEcCCCCcHHHHHHHHHc
Q 010314 124 KVVKSSNGYALPGTMTVIMGPAKSGKSTLLRAIAG 158 (513)
Q Consensus 124 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLl~~L~G 158 (513)
..+++. +..-.|.-++|.|+||+|||||.-.|..
T Consensus 136 ~~~H~~-~v~~~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 136 AQIHGV-LLEVFGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEE-EEEETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ceeEEE-EEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 455553 3334688899999999999999988765
No 494
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.17 E-value=0.08 Score=53.46 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 010314 135 PGTMTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 135 ~Ge~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.+..+.|.||+|+|||||++.++...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999998754
No 495
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.16 E-value=0.062 Score=56.20 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~ 159 (513)
.++|+|.+|+|||||++.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 496
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=92.14 E-value=0.049 Score=50.70 Aligned_cols=21 Identities=29% Similarity=0.689 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHH-HHcC
Q 010314 139 TVIMGPAKSGKSTLLRA-IAGR 159 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~-L~G~ 159 (513)
++|+|++|+|||||++. +.|.
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999998 5554
No 497
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.99 E-value=0.073 Score=57.00 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=25.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 010314 134 LPGTMTVIMGPAKSGKSTLLRAIAGRLP 161 (513)
Q Consensus 134 ~~Ge~~aliGpsGsGKSTLl~~L~G~~~ 161 (513)
+.|-++.|+|.+||||||+.+.|+..+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3677899999999999999999998765
No 498
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.95 E-value=0.049 Score=55.29 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 010314 138 MTVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 138 ~~aliGpsGsGKSTLl~~L~G~~ 160 (513)
.++|+|..|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 499
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=91.94 E-value=0.016 Score=53.07 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 010314 139 TVIMGPAKSGKSTLLRAIAGRL 160 (513)
Q Consensus 139 ~aliGpsGsGKSTLl~~L~G~~ 160 (513)
++|+|++|+|||||++.|.+..
T Consensus 36 i~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 36 LLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
No 500
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.86 E-value=0.095 Score=51.86 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 010314 136 GTMTVIMGPAKSGKSTLLRAIAGR 159 (513)
Q Consensus 136 Ge~~aliGpsGsGKSTLl~~L~G~ 159 (513)
|.++.|.||.|+|||||++.++..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH
Confidence 579999999999999999999864
Done!