BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010316
(513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 406 LNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEI 464
L L N G +G +P +S + L + L N LSGTIP L SL +L L L N GEI
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 465 PSSLGKIQSLRELFLQNNNLTGQIPSSL 492
P L +++L L L N+LTG+IPS L
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGL 486
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 397 YDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHL 455
Y + + + L+ + L+G +PS +S T L+ I L NN L+G IP + L L L L
Sbjct: 464 YVKTLETLILDFND--LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 456 EDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSLIK 494
+N FSG IP+ LG +SL L L N G IP+++ K
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 381 DPCLPHGYSWTGITC-TYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSG 439
+PC + G T T+D ++ L+++ LSG +P I + L + LG+N++SG
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Query: 440 TIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP 489
+IPD + L L L L N+ G IP ++ + L E+ L NNNL+G IP
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQF 460
+V+L+L+ LSG++PS++ L+ L + L N L G IP +L + LETL L+ N
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478
Query: 461 SGEIPSSLGKIQSLRELFLQNNNLTGQIP 489
+GEIPS L +L + L NN LTG+IP
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIP 507
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 403 IVTLNLTNMGLSGSLPSNISR--LTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQ 459
++TL+L++ SG + N+ + L ++L NN +G IP LS+ L +LHL N
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 460 FSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSLI 493
SG IPSSLG + LR+L L N L G+IP L+
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 413 LSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKI 471
L G +P + + L + L N+L+G IP LS+ L + L +N+ +GEIP +G++
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 472 QSLRELFLQNNNLTGQIPSSL 492
++L L L NN+ +G IP+ L
Sbjct: 514 ENLAILKLSNNSFSGNIPAEL 534
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 31/88 (35%)
Query: 435 NNLSGTIPDLSSLMR---LETLHLEDNQFSGEIPSSLGKIQS------------------ 473
NN SG +P + +L++ L+ L L N+FSGE+P SL + +
Sbjct: 328 NNFSGELP-MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 474 ---------LRELFLQNNNLTGQIPSSL 492
L+EL+LQNN TG+IP +L
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 435 NNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSL 492
N LSG IP ++ S+ L L+L N SG IP +G ++ L L L +N L G+IP ++
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 406 LNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDL 444
L+L++ L G +P +S LT L+ I L NNNLSG IP++
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 408 LTNMGLSGSLPS---NISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEI 464
L ++ +SG+ S ++SR L + + +NN S IP L L+ L + N+ SG+
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 239
Query: 465 PSSLGKIQSLRELFLQNNNLTGQIP 489
++ L+ L + +N G IP
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIP 264
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 376 LDWSGDPCLPHGYSWTGITCTYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNN 435
LD SG+ L +S TCT + LN+++ G +P L +L + L N
Sbjct: 228 LDISGNK-LSGDFSRAISTCT-----ELKLLNISSNQFVGPIPP--LPLKSLQYLSLAEN 279
Query: 436 NLSGTIPDLSS--LMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP 489
+G IPD S L L L N F G +P G L L L +NN +G++P
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 406 LNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEI 464
L L N G +G +P +S + L + L N LSGTIP L SL +L L L N GEI
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455
Query: 465 PSSLGKIQSLRELFLQNNNLTGQIPSSL 492
P L +++L L L N+LTG+IPS L
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEIPSGL 483
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 397 YDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHL 455
Y + + + L+ + L+G +PS +S T L+ I L NN L+G IP + L L L L
Sbjct: 461 YVKTLETLILDFND--LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 456 EDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSLIK 494
+N FSG IP+ LG +SL L L N G IP+++ K
Sbjct: 519 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 381 DPCLPHGYSWTGITC-TYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSG 439
+PC + G T T+D ++ L+++ LSG +P I + L + LG+N++SG
Sbjct: 608 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 667
Query: 440 TIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP 489
+IPD + L L L L N+ G IP ++ + L E+ L NNNL+G IP
Sbjct: 668 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
Query: 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQF 460
+V+L+L+ LSG++PS++ L+ L + L N L G IP +L + LETL L+ N
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 475
Query: 461 SGEIPSSLGKIQSLRELFLQNNNLTGQIP 489
+GEIPS L +L + L NN LTG+IP
Sbjct: 476 TGEIPSGLSNCTNLNWISLSNNRLTGEIP 504
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 403 IVTLNLTNMGLSGSLPSNISR--LTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQ 459
++TL+L++ SG + N+ + L ++L NN +G IP LS+ L +LHL N
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 460 FSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSLI 493
SG IPSSLG + LR+L L N L G+IP L+
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 413 LSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKI 471
L G +P + + L + L N+L+G IP LS+ L + L +N+ +GEIP +G++
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 472 QSLRELFLQNNNLTGQIPSSL 492
++L L L NN+ +G IP+ L
Sbjct: 511 ENLAILKLSNNSFSGNIPAEL 531
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 31/88 (35%)
Query: 435 NNLSGTIPDLSSLMRLETLHLED---NQFSGEIPSSLGKIQS------------------ 473
NN SG +P + +L+++ L + D N+FSGE+P SL + +
Sbjct: 325 NNFSGELP-MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 383
Query: 474 ---------LRELFLQNNNLTGQIPSSL 492
L+EL+LQNN TG+IP +L
Sbjct: 384 NLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 435 NNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSLI 493
N LSG IP ++ S+ L L+L N SG IP +G ++ L L L +N L G+IP ++
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM- 697
Query: 494 KPGLNLKTS---PGNQLSSPPP 512
L + T N LS P P
Sbjct: 698 -SALTMLTEIDLSNNNLSGPIP 718
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 406 LNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDL 444
L+L++ L G +P +S LT L+ I L NNNLSG IP++
Sbjct: 682 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 408 LTNMGLSGSLPS---NISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEI 464
L ++ +SG+ S ++SR L + + +NN S IP L L+ L + N+ SG+
Sbjct: 177 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 236
Query: 465 PSSLGKIQSLRELFLQNNNLTGQIP 489
++ L+ L + +N G IP
Sbjct: 237 SRAISTCTELKLLNISSNQFVGPIP 261
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 376 LDWSGDPCLPHGYSWTGITCTYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNN 435
LD SG+ L +S TCT + LN+++ G +P L +L + L N
Sbjct: 225 LDISGNK-LSGDFSRAISTCT-----ELKLLNISSNQFVGPIPP--LPLKSLQYLSLAEN 276
Query: 436 NLSGTIPDLSS--LMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP 489
+G IPD S L L L N F G +P G L L L +NN +G++P
Sbjct: 277 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 13/164 (7%)
Query: 359 RDVIALETLRNSLQNPPL--DW--SGDPCLPHGYSWTGITCTYDRRI-RIVTLNLTNMGL 413
+D AL ++ L NP W + D C +W G+ C D + R+ L+L+ + L
Sbjct: 6 QDKQALLQIKKDLGNPTTLSSWLPTTDCC---NRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 414 SGS--LPSNISRLTALSGIWLGN-NNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLG 469
+PS+++ L L+ +++G NNL G IP ++ L +L L++ SG IP L
Sbjct: 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 470 KIQSLRELFLQNNNLTGQIPSSLIK-PGLNLKTSPGNQLSSPPP 512
+I++L L N L+G +P S+ P L T GN++S P
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 403 IVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLET-LHLEDNQF 460
+VTL+ + LSG+LP +IS L L GI N +SG IPD S +L T + + N+
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 461 SGEIPSSLGKI 471
+G+IP + +
Sbjct: 187 TGKIPPTFANL 197
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 430 IWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP 489
I L N+L+ + + L L L +N+ G +P L +++ L L + NNL G+IP
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 490 S 490
Sbjct: 286 Q 286
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 427 LSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQ 472
L+G+ L NN + GT+P L+ L L +L++ N GEIP G +Q
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ 291
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 406 LNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQ 459
L+L N + G+LP +++L L + + NNL G IP +L R + +N+
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 424 LTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNN 483
L L ++LGNN ++ I LS L +L+TL LEDNQ S +P L + L+ L+L N+
Sbjct: 130 LPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186
Query: 484 LT 485
++
Sbjct: 187 IS 188
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 421 ISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480
+ L L ++LGNN ++ I LS L +L+TL LEDNQ S +P L + L+ L+L
Sbjct: 130 LVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 186
Query: 481 NNNLT 485
N+++
Sbjct: 187 KNHIS 191
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 423 RLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNN 482
L L ++LGNN ++ I LS L +L+TL LEDNQ S +P L + L+ L+L N
Sbjct: 127 HLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKN 183
Query: 483 NLT 485
+++
Sbjct: 184 HIS 186
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 423 RLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNN 482
L L ++LGNN ++ I LS L +L+TL LEDNQ S +P L + L+ L+L N
Sbjct: 130 HLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 186
Query: 483 NLT 485
+++
Sbjct: 187 HIS 189
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 423 RLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNN 482
L L ++LGNN ++ I LS L +L+TL LEDNQ S +P L + L+ L+L N
Sbjct: 132 HLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188
Query: 483 NLT 485
+++
Sbjct: 189 HIS 191
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 423 RLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNN 482
L L ++LGNN ++ I LS L +L+TL LEDNQ S +P L + L+ L+L N
Sbjct: 152 HLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 208
Query: 483 NLT 485
+++
Sbjct: 209 HIS 211
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 423 RLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNN 482
L L ++LGNN ++ I LS L +L+TL LEDNQ +P L ++ L+ L+L N
Sbjct: 130 HLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKN 186
Query: 483 NLT 485
+++
Sbjct: 187 HIS 189
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 423 RLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNN 482
L L ++LGNN ++ I LS L +L+TL LEDNQ S +P L + L+ L+L N
Sbjct: 150 HLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 483 NLT 485
+++
Sbjct: 207 HIS 209
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 423 RLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNN 482
L L ++LGNN ++ I LS L +L+TL LEDNQ S +P L + L+ L+L N
Sbjct: 150 HLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 483 NLT 485
+++
Sbjct: 207 HIS 209
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 423 RLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNN 482
L L ++LGNN ++ I LS L +L+TL LEDNQ S +P L + L+ L+L N
Sbjct: 150 HLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 483 NLT 485
+++
Sbjct: 207 HIS 209
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 423 RLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNN 482
L L ++LGNN ++ I LS L +L+TL LEDNQ S +P L + L+ L+L N
Sbjct: 127 HLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 183
Query: 483 NLT 485
+++
Sbjct: 184 HIS 186
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 14/171 (8%)
Query: 321 LSGATNITLNPAPGSNKGPLINGGEIFQVLELGGRTLTRDVIALETLRNSLQNPPLDWSG 380
++ ++TL P S + PL + L+L L L L++S +N L+ S
Sbjct: 104 IAAQQSVTLAGGP-SWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSS 162
Query: 381 D-PCLPHGYSWTGITCTYDRRIRIVTLNLTNMGLSGSLPS-NISRLTALSGIWLGNNNLS 438
D L G+++ C R I N +N GL P+ N + L L G+ N NLS
Sbjct: 163 DLVALSGGHTFGKNQC---RFIMDRLYNFSNTGLPD--PTLNTTYLQTLRGLCPLNGNLS 217
Query: 439 GTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP 489
+ M L T + DN++ + G IQS +ELF + N T IP
Sbjct: 218 ALVD-----MDLRTPTIFDNKYYVNLEEQKGLIQSDQELF-SSPNATDTIP 262
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 74/171 (43%), Gaps = 14/171 (8%)
Query: 321 LSGATNITLNPAPGSNKGPLINGGEIFQVLELGGRTLTRDVIALETLRNSLQNPPLDWSG 380
++ ++TL P S + PL + L+L L L L++S +N L+ S
Sbjct: 103 IAAQQSVTLAGGP-SWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSS 161
Query: 381 D-PCLPHGYSWTGITCTYDRRIRIVTLNLTNMGLSGSLPS-NISRLTALSGIWLGNNNLS 438
D L G+S+ C R I N +N GL P+ N + L L G+ N NLS
Sbjct: 162 DLVALSGGHSFGKNQC---RFIMDRLYNFSNTGLPD--PTLNTTYLQTLRGLCPLNGNLS 216
Query: 439 GTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP 489
+ L T + DN++ + G IQS +ELF + N T IP
Sbjct: 217 ALVD-----FDLRTPTIFDNKYYVNLEEQKGLIQSDQELF-SSPNATDTIP 261
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 75/171 (43%), Gaps = 14/171 (8%)
Query: 321 LSGATNITLNPAPGSNKGPLINGGEIFQVLELGGRTLTRDVIALETLRNSLQNPPLDWSG 380
++ ++TL P S + PL + L+L L + L L++S +N L+ S
Sbjct: 104 IAAQQSVTLAGGP-SWRVPLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSS 162
Query: 381 D-PCLPHGYSWTGITCTYDRRIRIVTLNLTNMGLSGSLPS-NISRLTALSGIWLGNNNLS 438
D L G+++ C R I N +N GL P+ N + L L G+ N NLS
Sbjct: 163 DLVALSGGHTFGKNQC---RFIMDRLYNFSNTGLPD--PTLNTTYLQTLRGLCPLNGNLS 217
Query: 439 GTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP 489
+ L T + DN++ + G IQS +ELF + N T IP
Sbjct: 218 ALVD-----FDLRTPTIFDNKYYVNLEEQKGLIQSDQELF-SSPNATDTIP 262
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 14/171 (8%)
Query: 321 LSGATNITLNPAPGSNKGPLINGGEIFQVLELGGRTLTRDVIALETLRNSLQNPPLDWSG 380
++ ++TL P S + PL + L+L L L L++S +N L+ S
Sbjct: 104 IAAQQSVTLAGGP-SWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSS 162
Query: 381 D-PCLPHGYSWTGITCTYDRRIRIVTLNLTNMGLSGSLPS-NISRLTALSGIWLGNNNLS 438
D L G+++ C R I N +N GL P+ N + L L G+ N NLS
Sbjct: 163 DLVALSGGHTFGKNQC---RSIMDRLYNFSNTGLPD--PTLNTTYLQTLRGLCPLNGNLS 217
Query: 439 GTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP 489
+ L T + DN++ + G IQS +ELF + N T IP
Sbjct: 218 ALVD-----FDLRTPTIFDNKYYVNLEEQKGLIQSDQELF-SSPNATDTIP 262
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 397 YDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLM-----RLE 451
+ R +V L L L+G P+ + + + LG N I ++S+ M +L+
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN----KIKEISNKMFLGLHQLK 105
Query: 452 TLHLEDNQFSGEIPSSLGKIQSLRELFLQNN 482
TL+L DNQ S +P S + SL L L +N
Sbjct: 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 432 LGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQN 481
LG NL IP+L++L+RLE L L N+ P S + SLR+L+L +
Sbjct: 163 LGMCNLKD-IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 14/171 (8%)
Query: 321 LSGATNITLNPAPGSNKGPLINGGEIFQVLELGGRTLTRDVIALETLRNSLQNPPLDWSG 380
++ ++TL P S + PL + L+L L L L++S +N L+ S
Sbjct: 103 IAAQQSVTLAGGP-SWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSS 161
Query: 381 D-PCLPHGYSWTGITCTYDRRIRIVTLNLTNMGLSGSLPS-NISRLTALSGIWLGNNNLS 438
D L G+++ C R I N +N GL P+ N + L L G+ N NLS
Sbjct: 162 DLVALSGGHTFGKNQC---RFIMDRLYNFSNTGLPD--PTLNTTYLQTLRGLCPLNGNLS 216
Query: 439 GTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP 489
+ L T + DN++ + G IQS +ELF + N T IP
Sbjct: 217 ALVD-----FDLRTPTIFDNKYYVNLEEQKGLIQSDQELF-SSPNATDTIP 261
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 421 ISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480
+ LT L + +G+N +S I L++L +L +L L +NQ E +G + +L LFL
Sbjct: 261 VKDLTKLKXLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLS 319
Query: 481 NNNLT 485
N++T
Sbjct: 320 QNHIT 324
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 421 ISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480
I LT L + L N ++ P LS+L++L L++ N+ + S+L + +LREL+L
Sbjct: 62 IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLN 118
Query: 481 NNNLTGQIPSSLIKPGLNLKTSPGNQLSSPPP 512
+N++ P + + +L + LS P
Sbjct: 119 EDNISDISPLANLTKXYSLNLGANHNLSDLSP 150
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 14/171 (8%)
Query: 321 LSGATNITLNPAPGSNKGPLINGGEIFQVLELGGRTLTRDVIALETLRNSLQNPPLDWSG 380
++ ++TL P S + PL + L+L L L L++S +N L+ S
Sbjct: 103 IAAQQSVTLAGGP-SWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSS 161
Query: 381 D-PCLPHGYSWTGITCTYDRRIRIVTLNLTNMGLSGSLPS-NISRLTALSGIWLGNNNLS 438
D L G+++ C R I N +N GL P+ N + L L G+ N NLS
Sbjct: 162 DLVALSGGHTFGKNQC---RFIMDRLYNFSNTGLPD--PTLNTTYLQTLRGLCPLNGNLS 216
Query: 439 GTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP 489
+ L T + DN++ + G IQS +ELF + N T IP
Sbjct: 217 ALVD-----FDLRTPTIFDNKYYVNLEEQKGLIQSDQELF-SSPNATDTIP 261
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 14/171 (8%)
Query: 321 LSGATNITLNPAPGSNKGPLINGGEIFQVLELGGRTLTRDVIALETLRNSLQNPPLDWSG 380
++ ++TL P S + PL + L+L L L L++S +N L+ S
Sbjct: 103 IAAQQSVTLAGGP-SWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSS 161
Query: 381 D-PCLPHGYSWTGITCTYDRRIRIVTLNLTNMGLSGSLPS-NISRLTALSGIWLGNNNLS 438
D L G+++ C R I N +N GL P+ N + L L G+ N NLS
Sbjct: 162 DLVALSGGHTFGKNQC---RFIMDRLYNFSNTGLPD--PTLNTTYLQTLRGLCPLNGNLS 216
Query: 439 GTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP 489
+ L T + DN++ + G IQS +ELF + N T IP
Sbjct: 217 ALVD-----FDLRTPTIFDNKYYVNLEEQKGLIQSDQELF-SSPNATDTIP 261
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 14/171 (8%)
Query: 321 LSGATNITLNPAPGSNKGPLINGGEIFQVLELGGRTLTRDVIALETLRNSLQNPPLDWSG 380
++ ++TL P S + PL + L+L L L L++S +N L+ S
Sbjct: 103 IAAQQSVTLAGGP-SWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSS 161
Query: 381 D-PCLPHGYSWTGITCTYDRRIRIVTLNLTNMGLSGSLPS-NISRLTALSGIWLGNNNLS 438
D L G+++ C R I N +N GL P+ N + L L G+ N NLS
Sbjct: 162 DLVALSGGHTFGKNQC---RFIMDRLYNFSNTGLPD--PTLNTTYLQTLRGLCPLNGNLS 216
Query: 439 GTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP 489
+ L T + DN++ + G IQS +ELF + N T IP
Sbjct: 217 ALVD-----FDLRTPTIFDNKYYVNLEEQKGLIQSDQELF-SSPNATDTIP 261
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 14/171 (8%)
Query: 321 LSGATNITLNPAPGSNKGPLINGGEIFQVLELGGRTLTRDVIALETLRNSLQNPPLDWSG 380
++ ++TL P S + PL + L+L L L L++S +N L+ S
Sbjct: 104 IAAQQSVTLAGGP-SWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSS 162
Query: 381 D-PCLPHGYSWTGITCTYDRRIRIVTLNLTNMGLSGSLPS-NISRLTALSGIWLGNNNLS 438
D L G+++ C R I N +N GL P+ N + L L G+ N NLS
Sbjct: 163 DLVALSGGHTFGKNQC---RFIMDRLYNFSNTGLPD--PTLNTTYLQTLRGLCPLNGNLS 217
Query: 439 GTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP 489
+ L T + DN++ + G IQS +ELF + N T IP
Sbjct: 218 ALVD-----FDLRTPTIFDNKYYVNLEEQKGLIQSDQELF-SSPNATDTIP 262
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 14/171 (8%)
Query: 321 LSGATNITLNPAPGSNKGPLINGGEIFQVLELGGRTLTRDVIALETLRNSLQNPPLDWSG 380
++ ++TL P S + PL + L+L L L L++S +N L+ S
Sbjct: 104 IAAQQSVTLAGGP-SWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSS 162
Query: 381 D-PCLPHGYSWTGITCTYDRRIRIVTLNLTNMGLSGSLPS-NISRLTALSGIWLGNNNLS 438
D L G+++ C R I N +N GL P+ N + L L G+ N NLS
Sbjct: 163 DLVALSGGHTFGKNQC---RFIMDRLYNFSNTGLPD--PTLNTTYLQTLRGLCPLNGNLS 217
Query: 439 GTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP 489
+ L T + DN++ + G IQS +ELF + N T IP
Sbjct: 218 ALVD-----FDLRTPTIFDNKYYVNLEEQKGLIQSDQELF-SSPNATDTIP 262
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 424 LTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQN 481
L L + LG NL IP+L++L+RLE L L N+ P S + SLR+L+L +
Sbjct: 155 LVNLRYLNLGMCNLKD-IPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMH 211
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 14/171 (8%)
Query: 321 LSGATNITLNPAPGSNKGPLINGGEIFQVLELGGRTLTRDVIALETLRNSLQNPPLDWSG 380
++ ++TL P S + PL + L+L L L L++S +N L+ S
Sbjct: 103 IAAQQSVTLAGGP-SWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSS 161
Query: 381 D-PCLPHGYSWTGITCTYDRRIRIVTLNLTNMGLSGSLPS-NISRLTALSGIWLGNNNLS 438
D L G+++ C R I N +N GL P+ N + L L G+ N NLS
Sbjct: 162 DLVALYGGHTFGKNQC---RFIMDRLYNFSNTGLPD--PTLNTTYLQTLRGLCPLNGNLS 216
Query: 439 GTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP 489
+ L T + DN++ + G IQS +ELF + N T IP
Sbjct: 217 ALVD-----FDLRTPTIFDNKYYVNLEEQKGLIQSDQELF-SSPNATDTIP 261
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 14/171 (8%)
Query: 321 LSGATNITLNPAPGSNKGPLINGGEIFQVLELGGRTLTRDVIALETLRNSLQNPPLDWSG 380
++ ++TL P S + PL + L+L L L L++S +N L+ S
Sbjct: 104 IAAQQSVTLAGGP-SWRVPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSS 162
Query: 381 D-PCLPHGYSWTGITCTYDRRIRIVTLNLTNMGLSGSLPS-NISRLTALSGIWLGNNNLS 438
D L G+++ C R I N +N GL P+ N + L L G+ N NLS
Sbjct: 163 DLVALSGGHTFGKNQC---RFIMDRLYNFSNTGLPD--PTLNTTYLQTLRGLCPLNGNLS 217
Query: 439 GTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP 489
+ L T + DN++ + G IQS +ELF + N T IP
Sbjct: 218 ALVD-----FDLRTPTIFDNKYYVNLEEQKGLIQSDQELF-SSPNATDTIP 262
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 403 IVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDL-SSLMRLETLHLEDNQFS 461
I LNLT+ L +N +R + L+ + +G N +S P+L L L+ L+L+ N+ S
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 462 GEIPSSLGKIQSLRELFLQNNNL 484
+ +L EL L +N++
Sbjct: 92 QLSDKTFAFCTNLTELHLMSNSI 114
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 403 IVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDL-SSLMRLETLHLEDNQFS 461
I LNLT+ L +N +R + L+ + +G N +S P+L L L+ L+L+ N+ S
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 462 GEIPSSLGKIQSLRELFLQNNNL 484
+ +L EL L +N++
Sbjct: 97 QLSDKTFAFCTNLTELHLMSNSI 119
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 416 SLPSNI-SRLTALSGIWLGNNNLSGTIPD--LSSLMRLETLHLEDNQFSGEIPSSLGKIQ 472
SLP + +LT+L + L NN L +P+ L L+TL L++NQ + ++
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205
Query: 473 SLRELFLQNN 482
L+ L LQ N
Sbjct: 206 KLKMLQLQEN 215
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 406 LNLTNMGLSGSLPSN-ISRLTALSGIWLGNNNLSGTIPD--LSSLMRLETLHLEDNQFSG 462
L+L + LS SLPS RLT L ++L +N L T+P L LETL + DN+
Sbjct: 42 LDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99
Query: 463 EIPSSLGKIQSLRELFLQNNNL 484
++ +L EL L N L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQL 121
>pdb|1MC3|A Chain A, Crystal Structure Of Rffh
pdb|1MC3|B Chain B, Crystal Structure Of Rffh
Length = 296
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 197 FGYSGADNIRYPDDPFDRFWEPLVDNKKPEPGNLNVSVSGFWNLPPSKIFKTALATRPAE 256
FGY D R+ FD + + +KP+ N +V+G + SK+ + A +P+E
Sbjct: 136 FGYQVXDPERFGVVEFDDNFRAISLEEKPKQPKSNWAVTGLY-FYDSKVVEYAKQVKPSE 194
Query: 257 RMEL 260
R EL
Sbjct: 195 RGEL 198
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 403 IVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDL-SSLMRLETLHLEDNQFS 461
I LNLT+ L +N +R + L+ + +G N +S P+L L L+ L+L+ N+ S
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 462 GEIPSSLGKIQSLRELFLQNNNL 484
+ +L EL L +N++
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSI 109
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 403 IVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLM-RLETLHLEDNQFS 461
I LNLT+ L P+N +R + L+ + G N++S P+L ++ L+ L+L+ N+ S
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
Query: 462 GEIPSSLGKIQSLRELFLQNNNLTGQIPSSLIKPGLNL 499
+ +L EL L +N++ +I S+ K NL
Sbjct: 87 QISDQTFVFCTNLTELDLMSNSI-HKIKSNPFKNQKNL 123
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 420 NISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELF 478
N++ L L + L N+LS P LM L+ L + +Q ++ +QSL E+
Sbjct: 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261
Query: 479 LQNNNLTGQIPSSLIKP 495
L +NNLT +P L P
Sbjct: 262 LAHNNLT-LLPHDLFTP 277
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 418 PSNISRLTALSGIWLGNNNLSGTIPD--LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLR 475
P L L ++LG+N L G +P SL +L L L NQ + + ++ L+
Sbjct: 57 PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115
Query: 476 ELFLQNNNLTGQIPSSLIK-PGLNLKTSPGNQLSSPP 511
ELF+ N LT ++P + + L NQL S P
Sbjct: 116 ELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP 151
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 405 TLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEI 464
L+L+N+ + ++ +NI + L+ ++L N+L+ ++ +L L L L N+ + +
Sbjct: 228 ALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-L 285
Query: 465 PSSLGKIQSLRELFLQNNNLT 485
P+ LG L+ + +N +T
Sbjct: 286 PAELGSCFQLKYFYFFDNMVT 306
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 419 SNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477
++ R + L + LG+N + LS L L LHL++N+ S +P+ L ++ L+ +
Sbjct: 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVV 269
Query: 478 FLQNNNLT 485
+L NN+T
Sbjct: 270 YLHTNNIT 277
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 18/128 (14%)
Query: 376 LDWSGDPCLPHGY---SWTGITCTYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWL 432
++ G+P G+ ++ G+ Y +RI LT G+ LP ++ L L
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLKLNY---LRISEAKLT--GIPKDLPETLNEL------HL 200
Query: 433 GNNNLSG-TIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSS 491
+N + + DL +L L L NQ SL + +LREL L NN L+ ++P+
Sbjct: 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259
Query: 492 LIKPGLNL 499
L P L L
Sbjct: 260 L--PDLKL 265
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 416 SLPSNI-SRLTALSGIWLGNNNLSGTIPD--LSSLMRLETLHLEDNQFSGEIPSSLGKIQ 472
SLP+ + LT+L+ ++LG N L ++P+ + L L L+L NQ K+
Sbjct: 42 SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100
Query: 473 SLRELFLQNNNL 484
L+EL L N L
Sbjct: 101 QLKELALNTNQL 112
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 419 SNISRLTALSGIW---LGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLR 475
+NIS L L+ + +GNN ++ P L++L +L TL +DN+ S P L + +L
Sbjct: 148 TNISPLAGLTNLQYLSIGNNQVNDLTP-LANLSKLTTLRADDNKISDISP--LASLPNLI 204
Query: 476 ELFLQNNNLTGQIP 489
E+ L++N ++ P
Sbjct: 205 EVHLKDNQISDVSP 218
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 424 LTALSGIWLGNNNLSGT-IPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNN 482
LT L + L NN L+ + L +L+ L+L NQ ++ L+EL L N
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 483 NLTGQIPSSLIKPGLNLKT--SPGNQLSSPP 511
L IP+ NL+T NQL S P
Sbjct: 142 QLQS-IPAGAFDKLTNLQTLSLSTNQLQSVP 171
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 424 LTALSGIWLGNNNLSGT-IPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNN 482
LT L + L NN L+ + L +L+ L+L NQ ++ L+EL L N
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141
Query: 483 NLTGQIPSSLIKPGLNLKT--SPGNQLSSPP 511
L IP+ NL+T NQL S P
Sbjct: 142 QLQS-IPAGAFDKLTNLQTLSLSTNQLQSVP 171
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 405 TLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGT-IPDLSSLMRLETLHLEDNQFSGE 463
TL+L++ L SLP L AL+ + + N L+ + L L L+ L+L+ N+
Sbjct: 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 464 IPSSLGKIQSLRELFLQNNNLTGQIPSSLIKPGLNLKT 501
P L L +L L NNNLT ++P+ L+ NL T
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDT 176
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 24/130 (18%)
Query: 357 LTRDVIALETLRNSLQNPPLDWSGDPCLPHGYSWTGITCTYDRRIRIVTLNLTNMGLSGS 416
+T+++ +LETL D S + H Y T C + I + LNL++ L+GS
Sbjct: 398 MTKNMSSLETL---------DVSLNSLNSHAYDRT---CAWAESI--LVLNLSSNMLTGS 443
Query: 417 ----LPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQ 472
LP + L L NN + D++ L L+ L++ NQ ++
Sbjct: 444 VFRCLPPKVKVLD------LHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLT 497
Query: 473 SLRELFLQNN 482
SL+ ++L +N
Sbjct: 498 SLQYIWLHDN 507
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 405 TLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGT-IPDLSSLMRLETLHLEDNQFSGE 463
TL+L++ L SLP L AL+ + + N L+ + L L L+ L+L+ N+
Sbjct: 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 464 IPSSLGKIQSLRELFLQNNNLTGQIPSSLIKPGLNLKT 501
P L L +L L NNNLT ++P+ L+ NL T
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDT 176
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 405 TLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGT-IPDLSSLMRLETLHLEDNQFSGE 463
TL+L++ L SLP L AL+ + + N L+ + L L L+ L+L+ N+
Sbjct: 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 464 IPSSLGKIQSLRELFLQNNNLTGQIPSSLIKPGLNLKT 501
P L L +L L NNNLT ++P+ L+ NL T
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDT 176
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 405 TLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGT-IPDLSSLMRLETLHLEDNQFSGE 463
TL+L++ L SLP L AL+ + + N L+ + L L L+ L+L+ N+
Sbjct: 82 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 140
Query: 464 IPSSLGKIQSLRELFLQNNNLTGQIPSSLIKPGLNLKT 501
P L L +L L NNNLT ++P+ L+ NL T
Sbjct: 141 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDT 177
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 405 TLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGT-IPDLSSLMRLETLHLEDNQFSGE 463
TL+L++ L SLP L AL+ + + N L+ + L L L+ L+L+ N+
Sbjct: 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 464 IPSSLGKIQSLRELFLQNNNLTGQIPSSLIKPGLNLKT 501
P L L +L L NNNLT ++P+ L+ NL T
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDT 176
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 407 NLTNMGLSG----SLPSNI-SRLTALSGIWLGNNNLSGTIPD--LSSLMRLETLHLEDNQ 459
NLT + L+G SLP+ + +LT L + L N L ++PD L L L+L NQ
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYHNQ 144
Query: 460 FSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSLIKPGLNLK--TSPGNQLSSPP 511
K+ +L L L NN L +P + LK + NQL S P
Sbjct: 145 LQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKSVP 197
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 419 SNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477
+++ L L+ + L N++S L++ L LHL +N+ ++P L + ++ +
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268
Query: 478 FLQNNNLTGQIPSSLIKPGLNLKTS 502
+L NNN++ + PG N K +
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKA 293
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 419 SNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477
+++ L L+ + L N++S L++ L LHL +N+ ++P L + ++ +
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268
Query: 478 FLQNNNLTGQIPSSLIKPGLNLKTS 502
+L NNN++ + PG N K +
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKA 293
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 384 LPHGYSWTGITCTYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD 443
LP + T + + + + +L L G+ SLP++I+ L L + + N+ LS P
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA 224
Query: 444 LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQN 481
+ L +LE L L P G L+ L L++
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 441 IPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLT 485
+P+L+ L+ LE L + N F P S + SL++L++ N+ ++
Sbjct: 211 MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,470,705
Number of Sequences: 62578
Number of extensions: 747823
Number of successful extensions: 1574
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1446
Number of HSP's gapped (non-prelim): 145
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)