Query 010316
Match_columns 513
No_of_seqs 363 out of 3441
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 23:06:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 100.0 5.7E-87 1.2E-91 731.2 48.2 486 16-507 16-527 (623)
2 PF12819 Malectin_like: Carboh 100.0 5.3E-69 1.1E-73 549.6 33.1 315 28-349 1-347 (347)
3 PLN03150 hypothetical protein; 99.7 2.2E-16 4.7E-21 174.0 19.8 91 399-489 440-532 (623)
4 PLN00113 leucine-rich repeat r 99.5 4E-14 8.7E-19 164.7 13.9 152 355-512 25-205 (968)
5 PLN00113 leucine-rich repeat r 99.3 3.4E-12 7.5E-17 148.6 9.0 114 400-513 474-589 (968)
6 KOG0617 Ras suppressor protein 99.2 5.2E-13 1.1E-17 119.2 -3.1 110 401-512 33-144 (264)
7 PF11721 Malectin: Di-glucose 99.2 8.6E-12 1.9E-16 115.4 2.5 110 191-310 1-124 (174)
8 KOG0617 Ras suppressor protein 99.1 3.5E-12 7.5E-17 114.0 -1.7 118 393-513 71-191 (264)
9 PF11721 Malectin: Di-glucose 99.1 1.4E-10 3E-15 107.4 7.3 139 26-169 3-174 (174)
10 KOG0472 Leucine-rich repeat pr 99.0 1.8E-11 3.9E-16 122.2 -3.6 110 400-513 182-293 (565)
11 KOG0444 Cytoskeletal regulator 98.9 7.2E-11 1.6E-15 123.4 -4.4 114 392-507 213-328 (1255)
12 KOG0444 Cytoskeletal regulator 98.9 2.7E-10 5.9E-15 119.1 -0.9 159 335-506 212-373 (1255)
13 PF14580 LRR_9: Leucine-rich r 98.8 2.6E-09 5.7E-14 98.4 4.5 105 401-510 19-128 (175)
14 KOG0472 Leucine-rich repeat pr 98.8 6.4E-10 1.4E-14 111.3 -0.3 106 400-508 434-541 (565)
15 KOG0618 Serine/threonine phosp 98.6 2.6E-09 5.7E-14 116.6 -2.1 103 401-506 383-487 (1081)
16 KOG4194 Membrane glycoprotein 98.6 4.4E-08 9.6E-13 102.4 5.8 105 402-508 79-186 (873)
17 KOG4194 Membrane glycoprotein 98.5 5.2E-08 1.1E-12 101.9 3.5 109 399-508 123-234 (873)
18 PF13855 LRR_8: Leucine rich r 98.5 1.1E-07 2.4E-12 71.9 4.1 58 426-483 2-60 (61)
19 PF14580 LRR_9: Leucine-rich r 98.5 9.2E-08 2E-12 88.2 3.1 96 409-510 5-103 (175)
20 KOG1259 Nischarin, modulator o 98.4 4E-08 8.6E-13 95.3 0.2 107 400-511 306-415 (490)
21 KOG0532 Leucine-rich repeat (L 98.4 3.2E-08 7E-13 103.2 -0.7 107 402-512 144-251 (722)
22 PF13855 LRR_8: Leucine rich r 98.4 1.7E-07 3.7E-12 70.9 3.5 60 448-507 1-61 (61)
23 KOG0532 Leucine-rich repeat (L 98.4 1.8E-08 4E-13 105.0 -2.9 110 399-512 119-228 (722)
24 PRK15370 E3 ubiquitin-protein 98.4 6.1E-07 1.3E-11 100.5 8.8 101 401-511 199-299 (754)
25 KOG0618 Serine/threonine phosp 98.4 4.9E-08 1.1E-12 106.9 -0.3 168 327-510 292-467 (1081)
26 PRK15387 E3 ubiquitin-protein 98.4 3.4E-07 7.4E-12 102.2 5.9 80 425-512 382-462 (788)
27 PRK15370 E3 ubiquitin-protein 98.4 1.9E-06 4E-11 96.7 11.6 101 402-512 179-279 (754)
28 PLN03210 Resistant to P. syrin 98.3 1.5E-06 3.3E-11 103.0 9.7 106 400-506 610-715 (1153)
29 KOG1259 Nischarin, modulator o 98.3 1.2E-07 2.6E-12 92.0 -1.1 104 401-509 284-388 (490)
30 PLN03210 Resistant to P. syrin 98.2 2.8E-06 6.1E-11 100.7 9.4 107 401-511 778-886 (1153)
31 PRK15387 E3 ubiquitin-protein 98.2 2.5E-06 5.4E-11 95.4 7.6 33 426-461 283-315 (788)
32 KOG4237 Extracellular matrix p 98.1 2.1E-07 4.7E-12 93.4 -3.0 115 392-508 50-177 (498)
33 cd00116 LRR_RI Leucine-rich re 98.1 9.1E-07 2E-11 89.4 1.0 108 401-508 137-263 (319)
34 PF12819 Malectin_like: Carboh 98.0 3.8E-05 8.3E-10 79.0 11.7 145 27-174 182-347 (347)
35 COG4886 Leucine-rich repeat (L 98.0 5.6E-06 1.2E-10 86.7 5.4 120 389-512 174-294 (394)
36 cd00116 LRR_RI Leucine-rich re 98.0 1.5E-06 3.3E-11 87.8 0.6 109 401-509 108-235 (319)
37 KOG1859 Leucine-rich repeat pr 98.0 6.7E-07 1.5E-11 95.8 -2.4 104 400-509 186-293 (1096)
38 COG4886 Leucine-rich repeat (L 97.9 3.9E-06 8.4E-11 87.9 2.2 104 402-508 141-245 (394)
39 KOG1859 Leucine-rich repeat pr 97.9 4.8E-07 1E-11 96.9 -5.7 102 402-509 165-268 (1096)
40 KOG4579 Leucine-rich repeat (L 97.9 9.6E-07 2.1E-11 76.7 -3.0 106 401-509 53-160 (177)
41 KOG4237 Extracellular matrix p 97.8 1.2E-05 2.5E-10 81.2 2.1 89 397-485 270-359 (498)
42 KOG4579 Leucine-rich repeat (L 97.7 1.8E-06 4E-11 75.0 -3.3 105 403-510 29-138 (177)
43 PF12799 LRR_4: Leucine Rich r 97.7 2E-05 4.4E-10 55.3 2.4 36 449-485 2-37 (44)
44 PF12799 LRR_4: Leucine Rich r 97.6 2.6E-05 5.6E-10 54.8 1.4 40 472-512 1-41 (44)
45 KOG4658 Apoptotic ATPase [Sign 97.5 5.5E-05 1.2E-09 86.4 3.0 104 401-505 545-652 (889)
46 KOG0531 Protein phosphatase 1, 97.5 2.9E-05 6.4E-10 82.0 0.6 107 399-510 93-201 (414)
47 KOG0531 Protein phosphatase 1, 97.5 4.1E-05 8.9E-10 80.9 1.2 103 400-508 117-221 (414)
48 KOG3207 Beta-tubulin folding c 97.4 2.5E-05 5.4E-10 79.8 -1.7 62 400-461 145-210 (505)
49 KOG3207 Beta-tubulin folding c 97.3 8.8E-05 1.9E-09 75.9 0.9 108 400-508 196-314 (505)
50 KOG1644 U2-associated snRNP A' 96.9 0.0013 2.7E-08 61.2 5.0 99 402-504 43-149 (233)
51 KOG1644 U2-associated snRNP A' 96.9 0.0017 3.6E-08 60.4 5.2 83 425-509 42-127 (233)
52 KOG4658 Apoptotic ATPase [Sign 96.8 0.00056 1.2E-08 78.3 2.5 86 398-483 568-653 (889)
53 KOG2739 Leucine-rich acidic nu 96.8 0.00093 2E-08 64.4 3.3 95 402-501 44-149 (260)
54 KOG2123 Uncharacterized conser 96.6 0.0001 2.2E-09 71.4 -5.0 65 423-489 39-105 (388)
55 KOG2982 Uncharacterized conser 96.1 0.0017 3.6E-08 63.8 0.1 97 358-460 60-158 (418)
56 PRK15386 type III secretion pr 95.9 0.017 3.7E-07 60.2 6.6 94 401-505 72-187 (426)
57 PF08263 LRRNT_2: Leucine rich 95.5 0.0093 2E-07 41.5 2.1 34 358-396 2-43 (43)
58 KOG2982 Uncharacterized conser 95.5 0.0063 1.4E-07 59.8 1.6 34 402-435 122-156 (418)
59 KOG1909 Ran GTPase-activating 95.5 0.0019 4.1E-08 64.7 -2.1 107 401-507 185-310 (382)
60 PRK15386 type III secretion pr 95.2 0.045 9.8E-07 57.1 6.9 32 448-482 156-187 (426)
61 KOG3665 ZYG-1-like serine/thre 95.1 0.012 2.7E-07 65.8 2.7 106 400-508 147-263 (699)
62 KOG1909 Ran GTPase-activating 94.7 0.011 2.4E-07 59.3 0.7 109 400-508 156-283 (382)
63 PF00560 LRR_1: Leucine Rich R 94.5 0.014 3.1E-07 34.3 0.5 19 450-469 2-20 (22)
64 KOG2739 Leucine-rich acidic nu 94.4 0.017 3.8E-07 55.8 1.3 80 399-479 63-150 (260)
65 KOG0473 Leucine-rich repeat pr 93.7 0.0019 4.1E-08 61.3 -6.6 84 400-485 41-124 (326)
66 KOG0473 Leucine-rich repeat pr 93.1 0.0036 7.7E-08 59.5 -5.7 87 420-508 37-124 (326)
67 KOG3665 ZYG-1-like serine/thre 92.3 0.079 1.7E-06 59.4 2.4 87 399-488 171-266 (699)
68 COG5238 RNA1 Ran GTPase-activa 91.8 0.1 2.2E-06 50.9 2.2 85 421-507 88-197 (388)
69 PF00560 LRR_1: Leucine Rich R 91.7 0.079 1.7E-06 31.0 0.9 20 473-493 1-20 (22)
70 KOG2123 Uncharacterized conser 91.6 0.0066 1.4E-07 59.2 -6.1 81 425-509 19-102 (388)
71 COG5238 RNA1 Ran GTPase-activa 90.4 0.37 8.1E-06 47.2 4.5 106 399-508 90-227 (388)
72 PF13504 LRR_7: Leucine rich r 90.0 0.2 4.3E-06 27.4 1.3 9 475-483 4-12 (17)
73 KOG2120 SCF ubiquitin ligase, 89.0 0.034 7.4E-07 54.8 -3.7 102 401-504 234-372 (419)
74 PF13504 LRR_7: Leucine rich r 89.0 0.2 4.3E-06 27.4 0.9 17 495-511 1-17 (17)
75 PF13306 LRR_5: Leucine rich r 88.4 1.6 3.6E-05 37.2 6.8 99 401-504 12-112 (129)
76 KOG3593 Predicted receptor-lik 86.8 0.24 5.2E-06 48.4 0.6 108 189-309 58-170 (355)
77 smart00370 LRR Leucine-rich re 86.1 0.51 1.1E-05 28.6 1.6 13 473-485 3-15 (26)
78 smart00369 LRR_TYP Leucine-ric 86.1 0.51 1.1E-05 28.6 1.6 13 473-485 3-15 (26)
79 KOG2120 SCF ubiquitin ligase, 85.9 0.088 1.9E-06 52.1 -2.9 80 401-482 286-373 (419)
80 smart00369 LRR_TYP Leucine-ric 84.9 0.81 1.8E-05 27.7 2.1 19 494-512 1-19 (26)
81 smart00370 LRR Leucine-rich re 84.9 0.81 1.8E-05 27.7 2.1 19 494-512 1-19 (26)
82 PF13306 LRR_5: Leucine rich r 81.1 4.5 9.7E-05 34.4 6.2 82 420-505 7-91 (129)
83 PF13516 LRR_6: Leucine Rich r 70.2 0.51 1.1E-05 28.0 -2.0 13 449-461 3-15 (24)
84 smart00364 LRR_BAC Leucine-ric 68.4 3.3 7.1E-05 25.4 1.3 17 473-490 3-19 (26)
85 KOG3864 Uncharacterized conser 64.8 0.99 2.2E-05 42.4 -2.2 80 402-481 102-185 (221)
86 smart00365 LRR_SD22 Leucine-ri 57.7 8.6 0.00019 23.6 1.8 14 472-485 2-15 (26)
87 KOG1947 Leucine rich repeat pr 56.6 2.6 5.6E-05 44.7 -1.1 85 400-484 213-307 (482)
88 smart00368 LRR_RI Leucine rich 47.0 14 0.00031 22.8 1.6 13 449-461 3-15 (28)
89 PF04862 DUF642: Protein of un 46.5 2.2E+02 0.0048 25.6 11.0 82 84-171 72-158 (159)
90 PF03422 CBM_6: Carbohydrate b 45.2 1.8E+02 0.004 24.3 10.8 76 78-160 31-112 (125)
91 KOG3593 Predicted receptor-lik 44.6 13 0.00028 36.8 1.6 88 27-119 63-158 (355)
92 KOG3763 mRNA export factor TAP 43.6 10 0.00022 40.9 0.8 63 423-487 216-285 (585)
93 PF03944 Endotoxin_C: delta en 36.6 3E+02 0.0064 24.2 10.8 83 87-175 48-143 (143)
94 KOG3763 mRNA export factor TAP 32.9 18 0.0004 39.0 0.8 65 398-463 215-285 (585)
95 PRK06764 hypothetical protein; 28.8 48 0.001 26.4 2.3 19 80-98 73-91 (105)
96 PF15240 Pro-rich: Proline-ric 22.5 58 0.0013 30.0 2.0 17 7-23 3-19 (179)
97 CHL00108 psbJ photosystem II p 22.3 55 0.0012 22.1 1.3 13 97-109 26-38 (40)
98 PRK02565 photosystem II reacti 21.9 57 0.0012 21.9 1.3 13 97-109 25-37 (39)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=100.00 E-value=5.7e-87 Score=731.18 Aligned_cols=486 Identities=29% Similarity=0.449 Sum_probs=399.7
Q ss_pred hhccccCCCceEEccCCCCccc--ccceEEeeCCCccccCCcceeccCCCCCCccceeeeCCCCCCCcceEEecccCCeE
Q 010316 16 SLSSSQSPSGTLIDCGTVNVYT--INGLKWLPDNDYVTGGIPKNVTVAVAVPTLSTVRSFPNKLHQKFCYVVPVFRGGKY 93 (513)
Q Consensus 16 ~~~~~~~~~~f~IdCG~~~~~~--~~~~~~~~D~~~~~~g~~~~~~~~~~~~~y~t~R~Fp~~~~~~~~Y~~~~~~~~~y 93 (513)
.+++++++++|+||||++++++ .+||+|++|..|..+.......++...++|+|||+||...++++||+||++++|+|
T Consensus 16 ~~~~~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~~~~~~~~~~~~~~~~~~~~~~t~R~F~~~~g~~~cY~~~~~~~g~y 95 (623)
T PLN03150 16 ASLASPEPFTMRISCGARVNVRTAPTNTLWYKDFAYTGGIPANATRPSFIAPPLKTLRYFPLSDGPENCYNINRVPKGHY 95 (623)
T ss_pred cccccCCCccEEEeCCCCCCcccCCCCCEEcCCcccccCccccccCcccccchhhccccCCcccccccceEeeecCCCcE
Confidence 3333455667899999987764 58999999977653222222233344568999999996446799999999999999
Q ss_pred eEEEEEEecCCCCCCCCCeEEEEEeceeeEEEEecccccCCcceEEEEEEEecCCceeEEEEecCCCCCCCceeeeEeee
Q 010316 94 LVRTTYFYGGVNGRDSPPVFDQMVDGTFWSEVNTTVDYVHGLASYYEGVFLAQGKHMSLCIGSNNYTDSDPFISALEFVP 173 (513)
Q Consensus 94 lvRl~F~y~nyd~~~~~p~F~v~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~~~~~cl~~~~~~~s~pFIn~iEl~~ 173 (513)
||||||+|||||+.++.|.|||++|++.|.+|....... ...+++|+++.++++.+.|||+.++. ++||||+|||||
T Consensus 96 lVRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~~-~~~v~~E~i~~~~~~~l~vcf~~~~~--~~pFIs~iEv~~ 172 (623)
T PLN03150 96 SVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSSH-DEQVFAEALVFLTDGSASICFHSTGH--GDPAILSIEILQ 172 (623)
T ss_pred EEEEEeecCCcCCCCCCCceEEEECcEEEEEEecCcccC-CCcEEEEEEEEecCCcEEEEEecCCC--CCCceeEEEEEE
Confidence 999999999999999999999999999999987532211 23578999999999999999997654 599999999999
Q ss_pred cCCcccccC--CccceeEEEEEeeccCCCC-CCCCCCCCCCC--CcccccCCCC---C-CCCccceeecc-CCCCCCChH
Q 010316 174 LEESVYNST--DFGKFGLRLIARHSFGYSG-ADNIRYPDDPF--DRFWEPLVDN---K-KPEPGNLNVSV-SGFWNLPPS 243 (513)
Q Consensus 174 l~~~~y~~~--~~~~~~l~~~~R~n~G~~~-~~~i~~~~D~~--dR~W~~~~~~---~-~~~~~~~~i~~-~~~~~~~P~ 243 (513)
||+++|... ...+.+|+++||+|+||.. ...+||++|+| ||+|.++.++ . ..+++...|+. .+.++.||+
T Consensus 173 l~~~~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P~ 252 (623)
T PLN03150 173 VDDKAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYPE 252 (623)
T ss_pred cCcccccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccChH
Confidence 999999632 1235679999999999863 23589999998 9999987653 1 23455555552 245678999
Q ss_pred HHHHhhhcCCCCCccEEEcCCCCCCCcceEEEEEeecCCC-CCCCceEEEEEEECCeecCCCcccccC----cceeeee-
Q 010316 244 KIFKTALATRPAERMELTWPPVFLSSSRYYIALYFADNPS-SSREGTRVFDIIINGIPYHRNLNVTPD----GVAVFAT- 317 (513)
Q Consensus 244 ~V~~TA~~~~~~~~~~~tw~~~~~~~~~y~v~lhFae~~~-~~~~~~R~F~i~in~~~~~~~~~~~~~----~~~~~~~- 317 (513)
.|||||+++.++ ..+++|.++++++..|+|||||||++. ....++|+|+|||||+.+.+++|+... ..+++..
T Consensus 253 ~VyqTA~~~~~~-~~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~ 331 (623)
T PLN03150 253 SLYQSALVSTDT-QPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNK 331 (623)
T ss_pred HHhhhhccccCC-CCceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEe
Confidence 999999999863 367888888999999999999999874 456689999999999998888887543 1222211
Q ss_pred -eccCCcceEEEecCCCCCCCCCccceeeeeeeeeccCcccchhhHHHHHHHHhcCCCCC-CCCCCCCCCCCCceeEEec
Q 010316 318 -HWPLSGATNITLNPAPGSNKGPLINGGEIFQVLELGGRTLTRDVIALETLRNSLQNPPL-DWSGDPCLPHGYSWTGITC 395 (513)
Q Consensus 318 -~~~~~g~~~l~l~~~~~s~l~p~ln~~ei~~~~~l~~~t~~~d~~aL~~l~~~~~~~~~-~w~g~pC~~~~~~w~gv~c 395 (513)
.....|.++|++++...+ +|+|||+|+++++..+..+.+.|+.||+.+|+.+..+.. +|.++||.|..+.|.|+.|
T Consensus 332 ~v~~~~g~l~isl~p~~~s--~pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~~~w~Gv~C 409 (623)
T PLN03150 332 TVAVSGRTLTIVLQPKKGT--HAIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADC 409 (623)
T ss_pred EEeecCCeEEEEEeeCCCC--cceeeeeeeeeccccccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCccccccccee
Confidence 111237789999987644 699999999999998888899999999999999876543 8999999988889999999
Q ss_pred CCCC---ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCC
Q 010316 396 TYDR---RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKI 471 (513)
Q Consensus 396 ~~~~---l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l 471 (513)
.... ...++.|+|++|++.|.+|+.+++|++|+.|+|++|.+.|.+|. ++.+++|+.|+|++|+++|.+|+.++++
T Consensus 410 ~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 410 QFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred eccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcC
Confidence 6432 24699999999999999999999999999999999999999995 8999999999999999999999999999
Q ss_pred CCccEEEcccCcCCCcCCCCcC--CCCcCEEECCCCCC
Q 010316 472 QSLRELFLQNNNLTGQIPSSLI--KPGLNLKTSPGNQL 507 (513)
Q Consensus 472 ~~L~~L~L~~N~l~g~lp~~l~--l~~L~~L~l~~N~l 507 (513)
++|++|+|++|+|+|.+|..+. +..+..+++.+|..
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 9999999999999999999887 45778899999874
No 2
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=100.00 E-value=5.3e-69 Score=549.59 Aligned_cols=315 Identities=33% Similarity=0.571 Sum_probs=253.2
Q ss_pred EccCCCCccc-----ccceEEeeCCCccccCCcceeccC------CCCCCccceeeeCCCCCCCcceEEecc--cCCeEe
Q 010316 28 IDCGTVNVYT-----INGLKWLPDNDYVTGGIPKNVTVA------VAVPTLSTVRSFPNKLHQKFCYVVPVF--RGGKYL 94 (513)
Q Consensus 28 IdCG~~~~~~-----~~~~~~~~D~~~~~~g~~~~~~~~------~~~~~y~t~R~Fp~~~~~~~~Y~~~~~--~~~~yl 94 (513)
||||++.+.+ .+||+|++|.+|+++|.+..+++. ...++|+|||+||+ +.|+||+|++. +++|||
T Consensus 1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~~--g~r~cY~l~~~~~~~~~yl 78 (347)
T PF12819_consen 1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFPE--GSRNCYTLPVTPPGGGKYL 78 (347)
T ss_pred CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcCC--CCccEEEeeccCCCCceEE
Confidence 7999976543 369999999999999988887321 23569999999997 57899999987 466999
Q ss_pred EEEEEEecCCCCCC-----CCCeEEEEEeceeeEEEEecccccCCcceEEEEEEEec-CCceeEEEEecCCCCCCCceee
Q 010316 95 VRTTYFYGGVNGRD-----SPPVFDQMVDGTFWSEVNTTVDYVHGLASYYEGVFLAQ-GKHMSLCIGSNNYTDSDPFISA 168 (513)
Q Consensus 95 vRl~F~y~nyd~~~-----~~p~F~v~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~-~~~~~~cl~~~~~~~s~pFIn~ 168 (513)
|||||+|||||+++ .+|.|||++|++.|.+|+... . ....+++|+++.+. ++.++|||+.++.| ++|||||
T Consensus 79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~~~~-~-~~~~~~~E~ii~v~~~~~l~vclv~~~~g-~~pFIsa 155 (347)
T PF12819_consen 79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVNLSN-S-PSSPVVKEFIINVTWSDTLSVCLVPTGSG-TFPFISA 155 (347)
T ss_pred EEEEeccccccccccccccCCcceEEEECCceeEEEEecC-C-CcceEEEEEEEEEcCCCcEEEEEEeCCCC-CCCceeE
Confidence 99999999999874 257799999999999999654 1 22368899777777 79999999998864 4599999
Q ss_pred eEeeecCCccccc-CCccceeEEEEEeeccCCCCCCCCCCCCCCCCcccccCCC-CCC-CCccceeec--cCCCCCCChH
Q 010316 169 LEFVPLEESVYNS-TDFGKFGLRLIARHSFGYSGADNIRYPDDPFDRFWEPLVD-NKK-PEPGNLNVS--VSGFWNLPPS 243 (513)
Q Consensus 169 iEl~~l~~~~y~~-~~~~~~~l~~~~R~n~G~~~~~~i~~~~D~~dR~W~~~~~-~~~-~~~~~~~i~--~~~~~~~~P~ 243 (513)
|||||||+++|++ ...++.+|++++|+|||+..+ .|||++|+|||+|.++.. ..+ .+++..+|+ ..+..+.||.
T Consensus 156 iEl~~lp~~ly~~~~~~~s~~L~~~~R~n~G~~~~-~iryp~D~~dR~W~~~~~~~~~~~ist~~~i~~~~~~~~~~~P~ 234 (347)
T PF12819_consen 156 IELRPLPDSLYPDTDANSSQALETVYRLNVGGSSS-FIRYPDDTYDRIWQPYSSSPGWSNISTTSNININSSNNPYDAPS 234 (347)
T ss_pred EEEEECCccceeccccCCCceeEEEEeecCCCccc-ccCCCCCcceeeccccccCccccccccceeeecccCCccCcChH
Confidence 9999999999953 235678999999999997633 499999999999998632 222 455544564 3456789999
Q ss_pred HHHHhhhcCCCCC-ccEEEcCCCCCCCcceEEEEEeecCCCCC-CCceEEEEEEECCeecCCCcccccC---cceee---
Q 010316 244 KIFKTALATRPAE-RMELTWPPVFLSSSRYYIALYFADNPSSS-REGTRVFDIIINGIPYHRNLNVTPD---GVAVF--- 315 (513)
Q Consensus 244 ~V~~TA~~~~~~~-~~~~tw~~~~~~~~~y~v~lhFae~~~~~-~~~~R~F~i~in~~~~~~~~~~~~~---~~~~~--- 315 (513)
.||+||++|.+++ .++++|.+ ++++++||||||||||+... ..++|+|+|||||+.+.+++.+... +..+|
T Consensus 235 ~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~~~~~~~~~~~d~ 313 (347)
T PF12819_consen 235 AVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPYLGADTVPYYSDY 313 (347)
T ss_pred HHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCcccccCcceEeecce
Confidence 9999999998654 79999999 99999999999999999864 4458999999999998864443222 22223
Q ss_pred eeeccCCcceEEEecCCCCCCCCCccceeeeeee
Q 010316 316 ATHWPLSGATNITLNPAPGSNKGPLINGGEIFQV 349 (513)
Q Consensus 316 ~~~~~~~g~~~l~l~~~~~s~l~p~ln~~ei~~~ 349 (513)
...++..+.++|+|+++..+.+||+|||+|||++
T Consensus 314 ~~~~~~~~~~~isL~~t~~S~lppiLNalEIy~v 347 (347)
T PF12819_consen 314 VVNVPDSGFLNISLGPTPDSTLPPILNALEIYKV 347 (347)
T ss_pred EEEecCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence 2334445678999999999999999999999985
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.72 E-value=2.2e-16 Score=174.02 Aligned_cols=91 Identities=27% Similarity=0.503 Sum_probs=80.7
Q ss_pred CceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCC-CCccE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKI-QSLRE 476 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l-~~L~~ 476 (513)
.+++|+.|+|++|.+.|.+|+.++.|++|+.|+|++|+++|.+|+ ++.+++|+.|+|++|+++|.+|..++.+ .++..
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~ 519 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS 519 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce
Confidence 346789999999999999999999999999999999999999996 7999999999999999999999998764 47788
Q ss_pred EEcccCcCCCcCC
Q 010316 477 LFLQNNNLTGQIP 489 (513)
Q Consensus 477 L~L~~N~l~g~lp 489 (513)
+++.+|......|
T Consensus 520 l~~~~N~~lc~~p 532 (623)
T PLN03150 520 FNFTDNAGLCGIP 532 (623)
T ss_pred EEecCCccccCCC
Confidence 9999987653344
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.54 E-value=4e-14 Score=164.75 Aligned_cols=152 Identities=37% Similarity=0.619 Sum_probs=107.5
Q ss_pred cccchhhHHHHHHHHhcCCCC---CCCCC-CCCCCCCCceeEEecCCCCceeEEEeeecCCcCCcCCChhhhcCcCCCEE
Q 010316 355 RTLTRDVIALETLRNSLQNPP---LDWSG-DPCLPHGYSWTGITCTYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGI 430 (513)
Q Consensus 355 ~t~~~d~~aL~~l~~~~~~~~---~~w~g-~pC~~~~~~w~gv~c~~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L 430 (513)
...+.|..+|.++|+.+..+. .+|.. +.| |.|.|+.|... .+++.|+|++|+++|.++..+..+++|+.|
T Consensus 25 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~----c~w~gv~c~~~--~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L 98 (968)
T PLN00113 25 MLHAEELELLLSFKSSINDPLKYLSNWNSSADV----CLWQGITCNNS--SRVVSIDLSGKNISGKISSAIFRLPYIQTI 98 (968)
T ss_pred CCCHHHHHHHHHHHHhCCCCcccCCCCCCCCCC----CcCcceecCCC--CcEEEEEecCCCccccCChHHhCCCCCCEE
Confidence 345689999999999986543 26853 344 48999999753 478888888888888888888888888888
Q ss_pred EccCCcccccCCC--CCCCCCCCEEEccCccC----------------------cccCCccccCCCCccEEEcccCcCCC
Q 010316 431 WLGNNNLSGTIPD--LSSLMRLETLHLEDNQF----------------------SGEIPSSLGKIQSLRELFLQNNNLTG 486 (513)
Q Consensus 431 ~Ls~N~l~g~~p~--l~~l~~L~~L~Ls~N~l----------------------~g~lP~~l~~l~~L~~L~L~~N~l~g 486 (513)
+|++|++.+.+|. +..+++|++|+|++|++ ++.+|..++.+++|++|+|++|.+.+
T Consensus 99 ~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~ 178 (968)
T PLN00113 99 NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG 178 (968)
T ss_pred ECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccc
Confidence 8888888776663 23555555555555554 44555566666677777777777766
Q ss_pred cCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 487 QIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 487 ~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
.+|..+. +++|+.|++++|++.+.+|
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p 205 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIP 205 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCC
Confidence 6676666 7777777777777665544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.31 E-value=3.4e-12 Score=148.60 Aligned_cols=114 Identities=38% Similarity=0.568 Sum_probs=107.8
Q ss_pred ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEEE
Q 010316 400 RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELF 478 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 478 (513)
..+++.|++++|++.+.+|..+.++++|+.|+|++|.+.+.+|. +..+++|+.|+|++|+++|.+|..+..+++|+.|+
T Consensus 474 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 553 (968)
T PLN00113 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553 (968)
T ss_pred cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEE
Confidence 46799999999999999999999999999999999999999885 78999999999999999999999999999999999
Q ss_pred cccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCCC
Q 010316 479 LQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPPS 513 (513)
Q Consensus 479 L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp~ 513 (513)
|++|+++|.+|..+. +..|+.|++++|++++.+|+
T Consensus 554 Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 999999999999999 99999999999999987763
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.22 E-value=5.2e-13 Score=119.18 Aligned_cols=110 Identities=28% Similarity=0.418 Sum_probs=61.7
Q ss_pred eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcc
Q 010316 401 IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 480 (513)
.+++.|-||+|+++ .+|+.+..+.+|+.|++.+|++...++.++.+++|+.|+++.|++. .+|..|+.++.|+.|||.
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 34555566666665 5555566666666666666666555555556666666666666655 556666666666666665
Q ss_pred cCcCC-CcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 481 NNNLT-GQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 481 ~N~l~-g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
.|++. ..+|..|+ +..|+-|+|+.|.|.-+||
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~ 144 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP 144 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCCh
Confidence 55553 23444444 4444444555554444443
No 7
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.17 E-value=8.6e-12 Score=115.41 Aligned_cols=110 Identities=18% Similarity=0.272 Sum_probs=63.9
Q ss_pred EEEeeccCCCCCCCCCCCCCCCCcccccCCCCCCCCc----cc-----eeeccCCCCCCChHHHHHhhhcCCCCCccEEE
Q 010316 191 LIARHSFGYSGADNIRYPDDPFDRFWEPLVDNKKPEP----GN-----LNVSVSGFWNLPPSKIFKTALATRPAERMELT 261 (513)
Q Consensus 191 ~~~R~n~G~~~~~~i~~~~D~~dR~W~~~~~~~~~~~----~~-----~~i~~~~~~~~~P~~V~~TA~~~~~~~~~~~t 261 (513)
.++|+|+|+. .+ .|...+.|.+|........ .. .........+..+..+|||+|.... +++
T Consensus 1 ~~~~IN~Gg~-----~~-~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~ 70 (174)
T PF11721_consen 1 VVLRINAGGP-----AY-TDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFS 70 (174)
T ss_dssp EEEEEEETSS-----SE-EETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEE
T ss_pred CEEEEECCCC-----cc-cCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceE
Confidence 3689999975 23 7788999999866532111 00 0001112233557799999999532 355
Q ss_pred cCCCCCCCcceEEEEEeecCCCCC-----CCceEEEEEEECCeecCCCcccccC
Q 010316 262 WPPVFLSSSRYYIALYFADNPSSS-----REGTRVFDIIINGIPYHRNLNVTPD 310 (513)
Q Consensus 262 w~~~~~~~~~y~v~lhFae~~~~~-----~~~~R~F~i~in~~~~~~~~~~~~~ 310 (513)
|.+++.++-.|-|+|||||+.... ..++|+|||+|||+.+.+++|+...
T Consensus 71 Y~ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~ 124 (174)
T PF11721_consen 71 YDIPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAE 124 (174)
T ss_dssp EEEE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHH
T ss_pred EEEecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHH
Confidence 555645777899999999966432 2689999999999999999997664
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.14 E-value=3.5e-12 Score=113.96 Aligned_cols=118 Identities=28% Similarity=0.434 Sum_probs=72.4
Q ss_pred EecCCCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCccccc-CC-CCCCCCCCCEEEccCccCcccCCccccC
Q 010316 393 ITCTYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGT-IP-DLSSLMRLETLHLEDNQFSGEIPSSLGK 470 (513)
Q Consensus 393 v~c~~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~ 470 (513)
++.+...++.++.|+++-|.+. .+|..|+.++.|+.|||..|++... +| .|..+..|+.|.|+.|.+. .+|..+++
T Consensus 71 lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~ 148 (264)
T KOG0617|consen 71 LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK 148 (264)
T ss_pred cChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh
Confidence 3333444445555555555554 4555555555555555555555432 22 2444455555555555555 56777777
Q ss_pred CCCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCCC
Q 010316 471 IQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPPS 513 (513)
Q Consensus 471 l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp~ 513 (513)
+++|+.|.+..|.+- ++|.+++ ++.|+.|++.+|+++-+||+
T Consensus 149 lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 149 LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChh
Confidence 888888888888777 7788888 88888888888888777774
No 9
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.11 E-value=1.4e-10 Score=107.36 Aligned_cols=139 Identities=21% Similarity=0.232 Sum_probs=74.4
Q ss_pred eEEccCCCCcccccceEEeeCCCccccCCcc-----------eeccC----CCCCCccceeeeCCCCCCCcceEEecccC
Q 010316 26 TLIDCGTVNVYTINGLKWLPDNDYVTGGIPK-----------NVTVA----VAVPTLSTVRSFPNKLHQKFCYVVPVFRG 90 (513)
Q Consensus 26 f~IdCG~~~~~~~~~~~~~~D~~~~~~g~~~-----------~~~~~----~~~~~y~t~R~Fp~~~~~~~~Y~~~~~~~ 90 (513)
+.|+||++...+..|+.|.+|..|..++..- ..... ...++|+|.|+=| ..+.|.||+.+.
T Consensus 3 ~~IN~Gg~~~~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~----~~f~Y~ip~~~~ 78 (174)
T PF11721_consen 3 LRINAGGPAYTDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGP----SSFSYDIPVVPN 78 (174)
T ss_dssp EEEEETSSSEEETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----S----SSEEEEEE--S-
T ss_pred EEEECCCCcccCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCC----CceEEEEecCCC
Confidence 4799999776557899999998665433300 00000 1224899999853 368999997788
Q ss_pred CeEeEEEEEEecCCCC----C-CCCCeEEEEEeceee-EEEEecccccCCc-ceEEEE-EEEecCCceeEEEE-------
Q 010316 91 GKYLVRTTYFYGGVNG----R-DSPPVFDQMVDGTFW-SEVNTTVDYVHGL-ASYYEG-VFLAQGKHMSLCIG------- 155 (513)
Q Consensus 91 ~~ylvRl~F~y~nyd~----~-~~~p~F~v~~~~~~~-~~v~~~~~~~~~~-~~~~e~-~~~~~~~~~~~cl~------- 155 (513)
|.|.|||||.-..+.. . ...-.|||++++... ..+++........ ..++++ .+.++++.+.|++.
T Consensus 79 G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~~~~~~ 158 (174)
T PF11721_consen 79 GTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWAGKGTL 158 (174)
T ss_dssp EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE--SEE
T ss_pred cEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEecCCCcE
Confidence 9999999998544443 0 111369999999654 4666543332222 344555 34455555554443
Q ss_pred ---ecCCCCCCCceeee
Q 010316 156 ---SNNYTDSDPFISAL 169 (513)
Q Consensus 156 ---~~~~~~s~pFIn~i 169 (513)
+.+. ...|.||||
T Consensus 159 ~i~~~~~-~~~p~IsaI 174 (174)
T PF11721_consen 159 CIPFIGS-YGNPLISAI 174 (174)
T ss_dssp EEEEESS-SSSSSEEEE
T ss_pred Eeecccc-CCCcEEeeC
Confidence 2232 346888887
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.00 E-value=1.8e-11 Score=122.22 Aligned_cols=110 Identities=26% Similarity=0.403 Sum_probs=85.5
Q ss_pred ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCcccc-CCCCccEEE
Q 010316 400 RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLG-KIQSLRELF 478 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~-~l~~L~~L~ 478 (513)
+.+++.|+.-+|-++ .+|++++.|.+|+-|+|..|++. .+|+|.+|..|+.|+++.|+++ .+|...+ ++++|..||
T Consensus 182 m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeee
Confidence 345666666666665 67777777777777777777776 4557777777777777777777 6666555 788999999
Q ss_pred cccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCCC
Q 010316 479 LQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPPS 513 (513)
Q Consensus 479 L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp~ 513 (513)
|..|+++ ++|.+++ +++|++||+++|.|+++|++
T Consensus 259 LRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~s 293 (565)
T KOG0472|consen 259 LRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYS 293 (565)
T ss_pred ccccccc-cCchHHHHhhhhhhhcccCCccccCCcc
Confidence 9999999 9999999 88999999999999998875
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.88 E-value=7.2e-11 Score=123.38 Aligned_cols=114 Identities=26% Similarity=0.380 Sum_probs=70.4
Q ss_pred EEecCCCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCC
Q 010316 392 GITCTYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKI 471 (513)
Q Consensus 392 gv~c~~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l 471 (513)
.++-+.+++.+|..++||.|++. .+|+.+-++++|+.|+|++|+|+..--..+...+|++|+||.|+++ .+|+.+++|
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL 290 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL 290 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhh
Confidence 34445555667777777777777 7777777777777777777777755444455566677777777766 666666666
Q ss_pred CCccEEEcccCcCC-CcCCCCcC-CCCcCEEECCCCCC
Q 010316 472 QSLRELFLQNNNLT-GQIPSSLI-KPGLNLKTSPGNQL 507 (513)
Q Consensus 472 ~~L~~L~L~~N~l~-g~lp~~l~-l~~L~~L~l~~N~l 507 (513)
++|+.|.+.+|++. .-||+.++ +..|+.+.+++|++
T Consensus 291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred HHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 66655555555543 13344444 44444444444443
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.87 E-value=2.7e-10 Score=119.14 Aligned_cols=159 Identities=26% Similarity=0.372 Sum_probs=121.1
Q ss_pred CCCCCccceeeeeeeeeccCcccchhhHHHHHHHHhcCCCCCCCCCCCCCCCCCceeEEecCCCCceeEEEeeecCCcCC
Q 010316 335 SNKGPLINGGEIFQVLELGGRTLTRDVIALETLRNSLQNPPLDWSGDPCLPHGYSWTGITCTYDRRIRIVTLNLTNMGLS 414 (513)
Q Consensus 335 s~l~p~ln~~ei~~~~~l~~~t~~~d~~aL~~l~~~~~~~~~~w~g~pC~~~~~~w~gv~c~~~~l~~l~~L~Ls~n~l~ 414 (513)
..+|+.|.++..+.-++++-+.++.-.++|-.+...... +.++ +....+....+.-.++..|+||.|.++
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrL---NLS~-------N~iteL~~~~~~W~~lEtLNlSrNQLt 281 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRL---NLSG-------NKITELNMTEGEWENLETLNLSRNQLT 281 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhhee---ccCc-------CceeeeeccHHHHhhhhhhccccchhc
Confidence 335666666666655566555555555555544432211 1111 233334333333358899999999999
Q ss_pred cCCChhhhcCcCCCEEEccCCccc--ccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcccCcCCCcCCCCc
Q 010316 415 GSLPSNISRLTALSGIWLGNNNLS--GTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSL 492 (513)
Q Consensus 415 g~ip~~l~~l~~L~~L~Ls~N~l~--g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~~l 492 (513)
.+|+.+++|++|+.|.+.+|+++ |++..++.+..|+.+..++|++. .+|+.++.|..|+.|.|++|++. .+|+.+
T Consensus 282 -~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaI 358 (1255)
T KOG0444|consen 282 -VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAI 358 (1255)
T ss_pred -cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhh
Confidence 99999999999999999999986 44445899999999999999999 89999999999999999999999 899999
Q ss_pred C-CCCcCEEECCCCC
Q 010316 493 I-KPGLNLKTSPGNQ 506 (513)
Q Consensus 493 ~-l~~L~~L~l~~N~ 506 (513)
. ++.|+.||+..|+
T Consensus 359 HlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 359 HLLPDLKVLDLRENP 373 (1255)
T ss_pred hhcCCcceeeccCCc
Confidence 9 9999999999996
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=2.6e-09 Score=98.41 Aligned_cols=105 Identities=30% Similarity=0.517 Sum_probs=41.2
Q ss_pred eeEEEeeecCCcCCcCCChhhh-cCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccc-cCCCCccEEE
Q 010316 401 IRIVTLNLTNMGLSGSLPSNIS-RLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSL-GKIQSLRELF 478 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l-~~l~~L~~L~ 478 (513)
.+++.|+|++|.|+ .+. .++ .+.+|+.|+|++|.|. .++.+..++.|+.|++++|+++ .+++.+ ..+++|++|+
T Consensus 19 ~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLEGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-cccCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 46789999999998 443 465 5789999999999998 4567888999999999999998 665555 3689999999
Q ss_pred cccCcCCCcCCC--CcC-CCCcCEEECCCCCCCCC
Q 010316 479 LQNNNLTGQIPS--SLI-KPGLNLKTSPGNQLSSP 510 (513)
Q Consensus 479 L~~N~l~g~lp~--~l~-l~~L~~L~l~~N~l~~~ 510 (513)
|++|++. .+-. .+. +++|+.|++.+|+++..
T Consensus 95 L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 95 LSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CcCCcCC-ChHHhHHHHcCCCcceeeccCCcccch
Confidence 9999997 4432 333 89999999999988643
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.81 E-value=6.4e-10 Score=111.30 Aligned_cols=106 Identities=34% Similarity=0.438 Sum_probs=92.4
Q ss_pred ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEEE
Q 010316 400 RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELF 478 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 478 (513)
+++++-|+|++|-+. .+|.+++.+..|+.|+++.|.+. .+|+ +..+..|+.+-.++|++...-|+.+..|.+|+.||
T Consensus 434 l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLD 511 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLD 511 (565)
T ss_pred hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceec
Confidence 467889999999998 99999999999999999999887 4554 45566777777788999844444599999999999
Q ss_pred cccCcCCCcCCCCcC-CCCcCEEECCCCCCC
Q 010316 479 LQNNNLTGQIPSSLI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 479 L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~ 508 (513)
|.+|.+. .+|+.++ +++|++|++.+|+|+
T Consensus 512 L~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 512 LQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9999999 9999999 999999999999998
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.64 E-value=2.6e-09 Score=116.61 Aligned_cols=103 Identities=30% Similarity=0.458 Sum_probs=71.2
Q ss_pred eeEEEeeecCCcCCcCCCh-hhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEc
Q 010316 401 IRIVTLNLTNMGLSGSLPS-NISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFL 479 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 479 (513)
.+|+.|+|++|.|. .+|+ .+.++..|++|+||||+++.....+..++.|++|...+|++. .+| .+.+++.|+.+||
T Consensus 383 ~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDL 459 (1081)
T ss_pred cceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEec
Confidence 46777777777776 4554 566777777777777777744434667777777777777777 677 5777778888888
Q ss_pred ccCcCCC-cCCCCcCCCCcCEEECCCCC
Q 010316 480 QNNNLTG-QIPSSLIKPGLNLKTSPGNQ 506 (513)
Q Consensus 480 ~~N~l~g-~lp~~l~l~~L~~L~l~~N~ 506 (513)
+.|+++- .+|...-.++|++|||++|.
T Consensus 460 S~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 460 SCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred ccchhhhhhhhhhCCCcccceeeccCCc
Confidence 8887762 22322224778888888774
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.61 E-value=4.4e-08 Score=102.40 Aligned_cols=105 Identities=28% Similarity=0.336 Sum_probs=59.4
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCC-CCCCCEEEccCccCcccCCccccCCCCccEEEcc
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSS-LMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~-l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 480 (513)
..+.|++++|.|...-+..|.++++|++++|..|.++ .+|.++. ..+|+.|+|.+|.|+..-.+.+..++.|+.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 3567888888887666667778888888888888777 4555433 3346666666665553333344444444555555
Q ss_pred cCcCCCcCCCCcC--CCCcCEEECCCCCCC
Q 010316 481 NNNLTGQIPSSLI--KPGLNLKTSPGNQLS 508 (513)
Q Consensus 481 ~N~l~g~lp~~l~--l~~L~~L~l~~N~l~ 508 (513)
.|.|+ ++|..-+ ..++++|+|++|.|+
T Consensus 158 rN~is-~i~~~sfp~~~ni~~L~La~N~It 186 (873)
T KOG4194|consen 158 RNLIS-EIPKPSFPAKVNIKKLNLASNRIT 186 (873)
T ss_pred hchhh-cccCCCCCCCCCceEEeecccccc
Confidence 44444 3333222 344444444444443
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.52 E-value=5.2e-08 Score=101.89 Aligned_cols=109 Identities=21% Similarity=0.270 Sum_probs=80.2
Q ss_pred CceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCccEE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 477 (513)
...+++.|+|.+|.|+..-.+++..++.|+.|||+.|.|+.... .+..-.++++|+|++|.|+..--..|..+.+|..|
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 34578888888888876666678888888888888888874432 35666678888888888876555677777788888
Q ss_pred EcccCcCCCcCCCC-cC-CCCcCEEECCCCCCC
Q 010316 478 FLQNNNLTGQIPSS-LI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 478 ~L~~N~l~g~lp~~-l~-l~~L~~L~l~~N~l~ 508 (513)
.|++|+++ .+|.. |. ++.|+.|+|..|+|.
T Consensus 203 kLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 203 KLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred ecccCccc-ccCHHHhhhcchhhhhhcccccee
Confidence 88888887 66654 34 788888888887764
No 18
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.50 E-value=1.1e-07 Score=71.94 Aligned_cols=58 Identities=40% Similarity=0.555 Sum_probs=29.9
Q ss_pred CCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEEEcccCc
Q 010316 426 ALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNN 483 (513)
Q Consensus 426 ~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~ 483 (513)
+|+.|++++|++....++ |..+++|++|++++|+++..-|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 345555555555544332 4455555555555555554444455555555555555554
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.46 E-value=9.2e-08 Score=88.20 Aligned_cols=96 Identities=27% Similarity=0.362 Sum_probs=30.1
Q ss_pred cCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCC-CCCCCCEEEccCccCcccCCccccCCCCccEEEcccCcCCCc
Q 010316 409 TNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLS-SLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQ 487 (513)
Q Consensus 409 s~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~-~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~ 487 (513)
..+.|. .++. +.+..++++|+|++|.|+. +..++ .+.+|+.|+|++|+++ .++ .+..++.|++|+|++|+++ .
T Consensus 5 t~~~i~-~~~~-~~n~~~~~~L~L~~n~I~~-Ie~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~ 78 (175)
T PF14580_consen 5 TANMIE-QIAQ-YNNPVKLRELNLRGNQIST-IENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-S 78 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S
T ss_pred cccccc-cccc-ccccccccccccccccccc-ccchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-c
Confidence 334443 3333 5566689999999999984 56676 5889999999999999 554 5888999999999999999 6
Q ss_pred CCCCcC--CCCcCEEECCCCCCCCC
Q 010316 488 IPSSLI--KPGLNLKTSPGNQLSSP 510 (513)
Q Consensus 488 lp~~l~--l~~L~~L~l~~N~l~~~ 510 (513)
+.+.+. +++|+.|++++|+|..+
T Consensus 79 i~~~l~~~lp~L~~L~L~~N~I~~l 103 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSNNKISDL 103 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS---SC
T ss_pred cccchHHhCCcCCEEECcCCcCCCh
Confidence 765553 89999999999998764
No 20
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=4e-08 Score=95.28 Aligned_cols=107 Identities=23% Similarity=0.285 Sum_probs=70.7
Q ss_pred ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEc
Q 010316 400 RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFL 479 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 479 (513)
.+.++.|++|.|+|. .+.. +..|.+|+.|||++|.++...-=-..+.+.+.|.|++|.+. .+ ..++++-+|..||+
T Consensus 306 ~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 306 APKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDL 381 (490)
T ss_pred ccceeEEecccccee-eehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheeccc
Confidence 456666677777665 3333 56666667777777666532211134556666667776665 22 34667778889999
Q ss_pred ccCcCCCcCC--CCcC-CCCcCEEECCCCCCCCCC
Q 010316 480 QNNNLTGQIP--SSLI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 480 ~~N~l~g~lp--~~l~-l~~L~~L~l~~N~l~~~p 511 (513)
.+|++. .+. ..++ ++.|++|.|.+|++.+++
T Consensus 382 ~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 382 SSNQIE-ELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred cccchh-hHHHhcccccccHHHHHhhcCCCccccc
Confidence 999987 443 3556 889999999999998876
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.43 E-value=3.2e-08 Score=103.22 Aligned_cols=107 Identities=25% Similarity=0.398 Sum_probs=94.8
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEccc
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQN 481 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~ 481 (513)
-|+.|-+++|+++ .+|+.++.+.+|..|+.+.|.+...++.++.+.+|+.|.++.|++. .+|+.++.|+ |..||+++
T Consensus 144 pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfSc 220 (722)
T KOG0532|consen 144 PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSC 220 (722)
T ss_pred cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeeccc
Confidence 4788889999998 8899999888999999999999877778889999999999999998 7888888554 89999999
Q ss_pred CcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 482 NNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 482 N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
|+++ .||..|. ++.|+.|-|.+|+|.++|.
T Consensus 221 Nkis-~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 221 NKIS-YLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred Ccee-ecchhhhhhhhheeeeeccCCCCCChH
Confidence 9999 9999999 9999999999999988763
No 22
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=1.7e-07 Score=70.88 Aligned_cols=60 Identities=33% Similarity=0.468 Sum_probs=52.2
Q ss_pred CCCCEEEccCccCcccCCccccCCCCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCC
Q 010316 448 MRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQL 507 (513)
Q Consensus 448 ~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l 507 (513)
++|+.|++++|+++..-+..|..+++|++|++++|+++..-|..|. +++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999999955557899999999999999999944455667 99999999999985
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.42 E-value=1.8e-08 Score=105.02 Aligned_cols=110 Identities=28% Similarity=0.404 Sum_probs=100.7
Q ss_pred CceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELF 478 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 478 (513)
.+..++.|+|+.|.++ .+|..++.|+ |+.|-+++|+++..+++++.+..|..||.+.|++. .+|..++.+.+|+.|+
T Consensus 119 ~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLN 195 (722)
T ss_pred hhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHH
Confidence 4567889999999999 9999999998 99999999999977778998999999999999998 8999999999999999
Q ss_pred cccCcCCCcCCCCcCCCCcCEEECCCCCCCCCCC
Q 010316 479 LQNNNLTGQIPSSLIKPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 479 L~~N~l~g~lp~~l~l~~L~~L~l~~N~l~~~pp 512 (513)
+..|++. .+|++++.-.|..||+++|+++.+|-
T Consensus 196 vrRn~l~-~lp~El~~LpLi~lDfScNkis~iPv 228 (722)
T KOG0532|consen 196 VRRNHLE-DLPEELCSLPLIRLDFSCNKISYLPV 228 (722)
T ss_pred Hhhhhhh-hCCHHHhCCceeeeecccCceeecch
Confidence 9999999 89999996678899999999998873
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.41 E-value=6.1e-07 Score=100.54 Aligned_cols=101 Identities=27% Similarity=0.404 Sum_probs=65.7
Q ss_pred eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcc
Q 010316 401 IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 480 (513)
..++.|+|++|+|+ .+|..+. ++|+.|++++|+++..+..+ ..+|+.|+|++|++. .+|..+. .+|+.|+|+
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCChhh--hccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 35777888888887 5666554 47778888888777433223 235777777777776 6666553 467777777
Q ss_pred cCcCCCcCCCCcCCCCcCEEECCCCCCCCCC
Q 010316 481 NNNLTGQIPSSLIKPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 481 ~N~l~g~lp~~l~l~~L~~L~l~~N~l~~~p 511 (513)
+|+|+ .+|..+. .+|+.|++++|+|+++|
T Consensus 271 ~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~LP 299 (754)
T PRK15370 271 HNKIS-CLPENLP-EELRYLSVYDNSIRTLP 299 (754)
T ss_pred CCccC-ccccccC-CCCcEEECCCCccccCc
Confidence 77776 5665443 46677777777766654
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.40 E-value=4.9e-08 Score=106.91 Aligned_cols=168 Identities=22% Similarity=0.318 Sum_probs=124.1
Q ss_pred EEecCCCCCCCCCccceeeeeeeeeccCccc---chhhHHHHHH-HHhcCCCCCCCCCCCCCCCCCceeEEecCC-CCce
Q 010316 327 ITLNPAPGSNKGPLINGGEIFQVLELGGRTL---TRDVIALETL-RNSLQNPPLDWSGDPCLPHGYSWTGITCTY-DRRI 401 (513)
Q Consensus 327 l~l~~~~~s~l~p~ln~~ei~~~~~l~~~t~---~~d~~aL~~l-~~~~~~~~~~w~g~pC~~~~~~w~gv~c~~-~~l~ 401 (513)
+.+...+.+.+|+.+.++..+..+++..+.. ++-..+.... .+.++.. | ......+|.. ...+
T Consensus 292 l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s--------~----n~l~~lp~~~e~~~~ 359 (1081)
T KOG0618|consen 292 LSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVS--------S----NKLSTLPSYEENNHA 359 (1081)
T ss_pred HHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhh--------h----ccccccccccchhhH
Confidence 4444556777888888888888877754322 2211111111 1122211 1 0122222332 2356
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC--CCCCCCCCEEEccCccCcccCCccccCCCCccEEEc
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD--LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFL 479 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~--l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 479 (513)
.|+.|.+.+|.++..+-+.+.++++|+.|+|++|++. .+|+ +.++..|+.|+||+|+|+ .+|..+..+..|++|..
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 8899999999999888888999999999999999997 4453 689999999999999999 89999999999999999
Q ss_pred ccCcCCCcCCCCcC-CCCcCEEECCCCCCCCC
Q 010316 480 QNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSP 510 (513)
Q Consensus 480 ~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~ 510 (513)
.+|++. .+| .+. ++.|+.+|++.|+|+..
T Consensus 438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred cCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence 999999 899 555 99999999999998753
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.38 E-value=3.4e-07 Score=102.23 Aligned_cols=80 Identities=28% Similarity=0.387 Sum_probs=61.9
Q ss_pred cCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcccCcCCCcCCCCcC-CCCcCEEECC
Q 010316 425 TALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSP 503 (513)
Q Consensus 425 ~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~ 503 (513)
.+|+.|+|++|+|++ +|.. .++|+.|++++|+|+ .+|.. ..+|+.|+|++|+|+ .+|..+. ++.|+.|+|+
T Consensus 382 ~~L~~LdLs~N~Lt~-LP~l--~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 382 SGLKELIVSGNRLTS-LPVL--PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred cccceEEecCCcccC-CCCc--ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 356777777777774 3332 356888888888887 57753 346788999999998 8999888 9999999999
Q ss_pred CCCCCCCCC
Q 010316 504 GNQLSSPPP 512 (513)
Q Consensus 504 ~N~l~~~pp 512 (513)
+|+|++..|
T Consensus 454 ~N~Ls~~~~ 462 (788)
T PRK15387 454 GNPLSERTL 462 (788)
T ss_pred CCCCCchHH
Confidence 999987643
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.38 E-value=1.9e-06 Score=96.69 Aligned_cols=101 Identities=28% Similarity=0.437 Sum_probs=83.4
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEccc
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQN 481 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~ 481 (513)
+.+.|++++++++ .+|..+. ++|+.|+|++|+++..++.+. .+|+.|+|++|+|+ .+|..+. .+|+.|+|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 3578999999998 6787664 589999999999996544443 58999999999999 7887654 4799999999
Q ss_pred CcCCCcCCCCcCCCCcCEEECCCCCCCCCCC
Q 010316 482 NNLTGQIPSSLIKPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 482 N~l~g~lp~~l~l~~L~~L~l~~N~l~~~pp 512 (513)
|++. .+|..+. .+|+.|++++|+|+.+|.
T Consensus 251 N~L~-~LP~~l~-s~L~~L~Ls~N~L~~LP~ 279 (754)
T PRK15370 251 NRIT-ELPERLP-SALQSLDLFHNKISCLPE 279 (754)
T ss_pred CccC-cCChhHh-CCCCEEECcCCccCcccc
Confidence 9999 8887654 679999999999998764
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.32 E-value=1.5e-06 Score=102.97 Aligned_cols=106 Identities=27% Similarity=0.295 Sum_probs=84.7
Q ss_pred ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEc
Q 010316 400 RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFL 479 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 479 (513)
+.+|+.|+|+++.+. .++..+..+++|+.|+|+++...+.+|+++.+++|+.|+|++|.....+|..+..+++|+.|++
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 357888999998887 7788888889999999988776667788888889999999888766688888888899999999
Q ss_pred ccCcCCCcCCCCcCCCCcCEEECCCCC
Q 010316 480 QNNNLTGQIPSSLIKPGLNLKTSPGNQ 506 (513)
Q Consensus 480 ~~N~l~g~lp~~l~l~~L~~L~l~~N~ 506 (513)
++|...+.+|..+.+++|+.|++++|.
T Consensus 689 ~~c~~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 689 SRCENLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred CCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence 876544477776656777777777664
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.26 E-value=1.2e-07 Score=92.02 Aligned_cols=104 Identities=21% Similarity=0.279 Sum_probs=89.1
Q ss_pred eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcc
Q 010316 401 IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 480 (513)
..++.++||+|.|+ ++.++..-++.++.|++++|.+. .+.++..+.+|+.||||+|.++ ++-.+-.++-+++.|.|+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 46889999999999 89999999999999999999997 4556888999999999999998 666666778899999999
Q ss_pred cCcCCCcCCCCcC-CCCcCEEECCCCCCCC
Q 010316 481 NNNLTGQIPSSLI-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 481 ~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~ 509 (513)
+|.+. .+ ..+. +-+|..||+++|+|..
T Consensus 361 ~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ 388 (490)
T KOG1259|consen 361 QNKIE-TL-SGLRKLYSLVNLDLSSNQIEE 388 (490)
T ss_pred hhhHh-hh-hhhHhhhhheeccccccchhh
Confidence 99987 33 3344 8889999999998854
No 30
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.24 E-value=2.8e-06 Score=100.68 Aligned_cols=107 Identities=22% Similarity=0.253 Sum_probs=72.9
Q ss_pred eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcc
Q 010316 401 IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 480 (513)
++|+.|+|++|...+.+|..+++|++|+.|+|++|..-+.+|....+++|+.|+|++|.....+|.. ..+|+.|+|+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 5788899999887778999999999999999998865556665446677777777776444344432 2456666666
Q ss_pred cCcCCCcCCCCcC-CCCcCEEECCC-CCCCCCC
Q 010316 481 NNNLTGQIPSSLI-KPGLNLKTSPG-NQLSSPP 511 (513)
Q Consensus 481 ~N~l~g~lp~~l~-l~~L~~L~l~~-N~l~~~p 511 (513)
+|.++ .+|..+. +++|+.|++++ |++..++
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCCCCCcCccC
Confidence 66666 5666655 66666666655 3444443
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.21 E-value=2.5e-06 Score=95.43 Aligned_cols=33 Identities=30% Similarity=0.508 Sum_probs=17.4
Q ss_pred CCCEEEccCCcccccCCCCCCCCCCCEEEccCccCc
Q 010316 426 ALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFS 461 (513)
Q Consensus 426 ~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~ 461 (513)
.|+.|+|++|+++.. |. .+++|+.|+|++|+++
T Consensus 283 ~L~~L~Ls~N~Lt~L-P~--~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 283 GLCKLWIFGNQLTSL-PV--LPPGLQELSVSDNQLA 315 (788)
T ss_pred hcCEEECcCCccccc-cc--cccccceeECCCCccc
Confidence 344455555555432 21 1345667777777666
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.11 E-value=2.1e-07 Score=93.37 Aligned_cols=115 Identities=27% Similarity=0.417 Sum_probs=79.7
Q ss_pred EEecCCCCce--------eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEc-cCccCc
Q 010316 392 GITCTYDRRI--------RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHL-EDNQFS 461 (513)
Q Consensus 392 gv~c~~~~l~--------~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~L-s~N~l~ 461 (513)
-|.|+..++. ..++|+|..|+|+...+..|+.+++|+.|+|++|+|+.+-|+ |.++.+|..|-+ ++|+|+
T Consensus 50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 4788876643 568999999999955566899999999999999999988775 778877766555 448888
Q ss_pred ccCCc-cccCCCCccEEEcccCcCCCcCC-CCcC-CCCcCEEECCCCCCC
Q 010316 462 GEIPS-SLGKIQSLRELFLQNNNLTGQIP-SSLI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 462 g~lP~-~l~~l~~L~~L~L~~N~l~g~lp-~~l~-l~~L~~L~l~~N~l~ 508 (513)
.+|. .|++|.+|+-|.+.-|++. .++ ..+. +++|..|.+-.|.+.
T Consensus 130 -~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 130 -DLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred -hhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhh
Confidence 5553 5666666666666655555 333 2233 555555555555443
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.09 E-value=9.1e-07 Score=89.39 Aligned_cols=108 Identities=26% Similarity=0.317 Sum_probs=81.4
Q ss_pred eeEEEeeecCCcCCcC----CChhhhcCcCCCEEEccCCcccccC----C-CCCCCCCCCEEEccCccCccc----CCcc
Q 010316 401 IRIVTLNLTNMGLSGS----LPSNISRLTALSGIWLGNNNLSGTI----P-DLSSLMRLETLHLEDNQFSGE----IPSS 467 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~~----p-~l~~l~~L~~L~Ls~N~l~g~----lP~~ 467 (513)
++++.|++++|.+++. ++..+..+++|+.|++++|.+.+.. + .+..+++|+.|+|++|.+++. ++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 6789999999998843 4445677789999999999988421 1 244567999999999998743 3445
Q ss_pred ccCCCCccEEEcccCcCCCcCCCCcC------CCCcCEEECCCCCCC
Q 010316 468 LGKIQSLRELFLQNNNLTGQIPSSLI------KPGLNLKTSPGNQLS 508 (513)
Q Consensus 468 l~~l~~L~~L~L~~N~l~g~lp~~l~------l~~L~~L~l~~N~l~ 508 (513)
+..+++|++|++++|++++.-...+. ...|+.|++++|.++
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 66788999999999998853232332 278999999999886
No 34
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=98.03 E-value=3.8e-05 Score=79.04 Aligned_cols=145 Identities=17% Similarity=0.262 Sum_probs=80.2
Q ss_pred EEccCCCCc---cc--ccceEEeeC---CCccccCCcceec--c---CCCC--CCccceeeeCCCCCC--CcceEEeccc
Q 010316 27 LIDCGTVNV---YT--INGLKWLPD---NDYVTGGIPKNVT--V---AVAV--PTLSTVRSFPNKLHQ--KFCYVVPVFR 89 (513)
Q Consensus 27 ~IdCG~~~~---~~--~~~~~~~~D---~~~~~~g~~~~~~--~---~~~~--~~y~t~R~Fp~~~~~--~~~Y~~~~~~ 89 (513)
+++||++.. +. .-+|.|.+. ...........+. . .... ..|+|||.=... .. ...+.+ +.+
T Consensus 182 R~n~G~~~~~iryp~D~~dR~W~~~~~~~~~~~ist~~~i~~~~~~~~~~~P~~V~~TA~~~~~~-s~~~nltw~~-~~~ 259 (347)
T PF12819_consen 182 RLNVGGSSSFIRYPDDTYDRIWQPYSSSPGWSNISTTSNININSSNNPYDAPSAVYQTARTPSNS-SDPLNLTWSF-VDP 259 (347)
T ss_pred eecCCCcccccCCCCCcceeeccccccCccccccccceeeecccCCccCcChHHHHHhhhccccc-ccceEEEecc-CCC
Confidence 799998751 11 357999853 1121111112232 1 1222 279999976442 11 223444 566
Q ss_pred CCeEeEEEEEEecCCCCCCC-CCeEEEEEeceeeEEEEecccccCC--cceEEEEEEEecC-CceeEEEEecCCCCCCCc
Q 010316 90 GGKYLVRTTYFYGGVNGRDS-PPVFDQMVDGTFWSEVNTTVDYVHG--LASYYEGVFLAQG-KHMSLCIGSNNYTDSDPF 165 (513)
Q Consensus 90 ~~~ylvRl~F~y~nyd~~~~-~p~F~v~~~~~~~~~v~~~~~~~~~--~~~~~e~~~~~~~-~~~~~cl~~~~~~~s~pF 165 (513)
+..|+||+||.--.....+. .-.|++++++..|.. ......... ...+..++..+.. ..+.|.|..++...--|+
T Consensus 260 ~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~isL~~t~~S~lppi 338 (347)
T PF12819_consen 260 GFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYS-DVSPPYLGADTVPYYSDYVVNVPDSGFLNISLGPTPDSTLPPI 338 (347)
T ss_pred CccEEEEEEEeecccccCCCCeEEEEEEECCeEccC-ccCcccccCcceEeecceEEEecCCCEEEEEEEeCCCCCcCce
Confidence 77899999998322211111 246999999988853 222111111 1234555555554 356677776654322399
Q ss_pred eeeeEeeec
Q 010316 166 ISALEFVPL 174 (513)
Q Consensus 166 In~iEl~~l 174 (513)
|||+||..|
T Consensus 339 LNalEIy~v 347 (347)
T PF12819_consen 339 LNALEIYKV 347 (347)
T ss_pred eEeeeeEeC
Confidence 999999864
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.02 E-value=5.6e-06 Score=86.70 Aligned_cols=120 Identities=30% Similarity=0.444 Sum_probs=98.0
Q ss_pred ceeEEecCCCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccc
Q 010316 389 SWTGITCTYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSL 468 (513)
Q Consensus 389 ~w~gv~c~~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l 468 (513)
.+..+.-....++.+..|++++|.++ .+|..+..+..|+.|.+++|.+...+..+..+..+..|.+.+|++. .++..+
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~ 251 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESI 251 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchh
Confidence 34334333324568899999999998 8888777788899999999975545556788889999999999988 557889
Q ss_pred cCCCCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 469 GKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 469 ~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
+.+++|+.|++++|+++ .++. +. +.+|+.|++++|.+...+|
T Consensus 252 ~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 252 GNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccccceecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence 99999999999999999 7776 66 9999999999999887765
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.00 E-value=1.5e-06 Score=87.76 Aligned_cols=109 Identities=28% Similarity=0.371 Sum_probs=82.1
Q ss_pred eeEEEeeecCCcCCc----CCChhhhcC-cCCCEEEccCCcccccCC-----CCCCCCCCCEEEccCccCccc----CCc
Q 010316 401 IRIVTLNLTNMGLSG----SLPSNISRL-TALSGIWLGNNNLSGTIP-----DLSSLMRLETLHLEDNQFSGE----IPS 466 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g----~ip~~l~~l-~~L~~L~Ls~N~l~g~~p-----~l~~l~~L~~L~Ls~N~l~g~----lP~ 466 (513)
++++.|++++|++.+ .+...+..+ ++|+.|++++|.+++... .+..+.+|+.|+|++|.+++. ++.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 458999999998873 344456677 889999999999885322 246678899999999998842 444
Q ss_pred cccCCCCccEEEcccCcCCCc----CCCCcC-CCCcCEEECCCCCCCC
Q 010316 467 SLGKIQSLRELFLQNNNLTGQ----IPSSLI-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 467 ~l~~l~~L~~L~L~~N~l~g~----lp~~l~-l~~L~~L~l~~N~l~~ 509 (513)
.+..+++|++|+|++|.+++. ++..+. +++|+.|++++|.++.
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 566677999999999998743 333444 7889999999998874
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.98 E-value=6.7e-07 Score=95.85 Aligned_cols=104 Identities=25% Similarity=0.303 Sum_probs=82.6
Q ss_pred ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCC--CCCCCCCEEEccCccCcccCCccccCCCCccEE
Q 010316 400 RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDL--SSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l--~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 477 (513)
++.++.|+|++|+++ .+. .+..|++|++|||+.|.+. .+|.+ .++. |+.|.|++|.++ ++ ..+.+|.+|+.|
T Consensus 186 l~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~L 259 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGL 259 (1096)
T ss_pred HHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-hh-hhHHhhhhhhcc
Confidence 457899999999998 444 7888999999999999998 55654 3454 999999999998 33 357788999999
Q ss_pred EcccCcCCCcCCCCc-C-CCCcCEEECCCCCCCC
Q 010316 478 FLQNNNLTGQIPSSL-I-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 478 ~L~~N~l~g~lp~~l-~-l~~L~~L~l~~N~l~~ 509 (513)
||+.|-|++.-.-.+ . +..|+.|+|.+|++.-
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 999999985433222 2 8889999999998753
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.93 E-value=3.9e-06 Score=87.90 Aligned_cols=104 Identities=32% Similarity=0.417 Sum_probs=62.9
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEccc
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQN 481 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~ 481 (513)
+++.|++++|.+. .+|..+..++.|+.|+++.|++....+..+.++.|+.|++++|+++ .+|..+..+..|+.|.+++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcC
Confidence 5666666666666 5555566666666666666666644433346666666666666666 5665555555566666666
Q ss_pred CcCCCcCCCCcC-CCCcCEEECCCCCCC
Q 010316 482 NNLTGQIPSSLI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 482 N~l~g~lp~~l~-l~~L~~L~l~~N~l~ 508 (513)
|++. .++..+. +.++..|.+.+|++.
T Consensus 219 N~~~-~~~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 219 NSII-ELLSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred Ccce-ecchhhhhcccccccccCCceee
Confidence 6443 3444455 666666666666554
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.87 E-value=4.8e-07 Score=96.92 Aligned_cols=102 Identities=25% Similarity=0.284 Sum_probs=83.6
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCcc-ccCCCCccEEEcc
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSS-LGKIQSLRELFLQ 480 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~-l~~l~~L~~L~L~ 480 (513)
.|...+++.|.|. .+-+++.-++.|+.|+|++|++... ..+..|++|++|||++|++. .+|.- ...+ .|+.|.|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence 5667788888888 7888899999999999999999843 36788999999999999998 77763 2233 49999999
Q ss_pred cCcCCCcCCCCcC-CCCcCEEECCCCCCCC
Q 010316 481 NNNLTGQIPSSLI-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 481 ~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~ 509 (513)
+|.++ .+- .+. +.+|+.||++.|-|.+
T Consensus 241 nN~l~-tL~-gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 241 NNALT-TLR-GIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred ccHHH-hhh-hHHhhhhhhccchhHhhhhc
Confidence 99997 432 334 8999999999998764
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.87 E-value=9.6e-07 Score=76.71 Aligned_cols=106 Identities=19% Similarity=0.284 Sum_probs=79.8
Q ss_pred eeEEEeeecCCcCCcCCChhhhc-CcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEc
Q 010316 401 IRIVTLNLTNMGLSGSLPSNISR-LTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFL 479 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l~~-l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 479 (513)
.+++.++|++|.+. .+|+.|.. ++.++.|+|++|.|+..+.++..++.|+.|+++.|.+. ..|.-+..|.+|..|+.
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 47888899999998 67776654 45888999999999865557888899999999999988 77887878888888888
Q ss_pred ccCcCCCcCCCCcC-CCCcCEEECCCCCCCC
Q 010316 480 QNNNLTGQIPSSLI-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 480 ~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~ 509 (513)
.+|.+. ++|-.+. -...-..+++++.+.+
T Consensus 131 ~~na~~-eid~dl~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 131 PENARA-EIDVDLFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred CCCccc-cCcHHHhccccHHHHHhcCCcccc
Confidence 888887 7776655 2222233445555543
No 41
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.76 E-value=1.2e-05 Score=81.20 Aligned_cols=89 Identities=25% Similarity=0.308 Sum_probs=62.1
Q ss_pred CCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCcc
Q 010316 397 YDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLR 475 (513)
Q Consensus 397 ~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~ 475 (513)
...+++++.|+|++|+|++.-+..|..+.++++|.|..|+|...-. -|.++..|+.|+|.+|+|+-.-|..|..+.+|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 4456777777777777776666677777777777777777753322 256677777777777777766677777777777
Q ss_pred EEEcccCcCC
Q 010316 476 ELFLQNNNLT 485 (513)
Q Consensus 476 ~L~L~~N~l~ 485 (513)
.|+|-.|.|.
T Consensus 350 ~l~l~~Np~~ 359 (498)
T KOG4237|consen 350 TLNLLSNPFN 359 (498)
T ss_pred eeehccCccc
Confidence 7777766654
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.74 E-value=1.8e-06 Score=74.99 Aligned_cols=105 Identities=25% Similarity=0.333 Sum_probs=64.5
Q ss_pred EEEeeecCCcCCcCCChhh---hcCcCCCEEEccCCcccccCCCC-CCCCCCCEEEccCccCcccCCccccCCCCccEEE
Q 010316 403 IVTLNLTNMGLSGSLPSNI---SRLTALSGIWLGNNNLSGTIPDL-SSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELF 478 (513)
Q Consensus 403 l~~L~Ls~n~l~g~ip~~l---~~l~~L~~L~Ls~N~l~g~~p~l-~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 478 (513)
+..++|+++.|- .+++.. .+..+|+..+|++|.+...++.| ...+.++.|+|++|+++ .+|+.+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 334555555553 444433 33345555677777776555454 33446677777777776 6677777777777777
Q ss_pred cccCcCCCcCCCCcC-CCCcCEEECCCCCCCCC
Q 010316 479 LQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSP 510 (513)
Q Consensus 479 L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~ 510 (513)
++.|.|. ..|.-+. +.+|-.|+..+|.+..+
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ei 138 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARAEI 138 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccccC
Confidence 7777776 5566666 66677777766665544
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=2e-05 Score=55.31 Aligned_cols=36 Identities=36% Similarity=0.652 Sum_probs=20.4
Q ss_pred CCCEEEccCccCcccCCccccCCCCccEEEcccCcCC
Q 010316 449 RLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLT 485 (513)
Q Consensus 449 ~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~ 485 (513)
+|+.|+|++|+++ .+|..+.+|++|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4556666666665 45555666666666666666655
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.60 E-value=2.6e-05 Score=54.78 Aligned_cols=40 Identities=35% Similarity=0.525 Sum_probs=34.2
Q ss_pred CCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 472 QSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 472 ~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
++|++|+|++|+|+ .+|..+. +++|+.|++++|+|+.+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 47999999999999 8888788 9999999999999987654
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.49 E-value=5.5e-05 Score=86.40 Aligned_cols=104 Identities=26% Similarity=0.321 Sum_probs=84.0
Q ss_pred eeEEEeeecCCc--CCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEE
Q 010316 401 IRIVTLNLTNMG--LSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 401 ~~l~~L~Ls~n~--l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 477 (513)
+.+++|-+..|. +.-...+.|..|+.|++|||++|.--+.+|+ ++.+.+|++|+|++..+. .+|..+++|..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 468888888886 4423334477899999999999877777885 788999999999999998 899999999999999
Q ss_pred EcccCcCCCcCCCCcC-CCCcCEEECCCC
Q 010316 478 FLQNNNLTGQIPSSLI-KPGLNLKTSPGN 505 (513)
Q Consensus 478 ~L~~N~l~g~lp~~l~-l~~L~~L~l~~N 505 (513)
++..+.....+|.... +.+|++|.+..-
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccccchhhhcccccEEEeecc
Confidence 9998876545666666 899999887654
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.48 E-value=2.9e-05 Score=81.99 Aligned_cols=107 Identities=26% Similarity=0.315 Sum_probs=83.6
Q ss_pred CceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELF 478 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 478 (513)
.+..+..|++..|.|. .+...+..|++|++|+|++|.|+. +..+..++.|+.|++++|.++ .+ ..+..+..|+.++
T Consensus 93 ~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~-i~~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK-LEGLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLD 168 (414)
T ss_pred cccceeeeeccccchh-hcccchhhhhcchheecccccccc-ccchhhccchhhheeccCcch-hc-cCCccchhhhccc
Confidence 4567889999999998 555447888999999999999984 455666777999999999997 43 3456688999999
Q ss_pred cccCcCCCcCCCC-cC-CCCcCEEECCCCCCCCC
Q 010316 479 LQNNNLTGQIPSS-LI-KPGLNLKTSPGNQLSSP 510 (513)
Q Consensus 479 L~~N~l~g~lp~~-l~-l~~L~~L~l~~N~l~~~ 510 (513)
+++|++. .+... .. +..|+.+++.+|.+..+
T Consensus 169 l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 169 LSYNRIV-DIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred CCcchhh-hhhhhhhhhccchHHHhccCCchhcc
Confidence 9999988 55552 34 88888999999987654
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.45 E-value=4.1e-05 Score=80.90 Aligned_cols=103 Identities=31% Similarity=0.374 Sum_probs=55.6
Q ss_pred ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCcc-ccCCCCccEEE
Q 010316 400 RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSS-LGKIQSLRELF 478 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~-l~~l~~L~~L~ 478 (513)
+.+++.|+|++|.|+ .+.. +..++.|+.|++++|.|. .+..+..+..|+.+++++|.+. .+... +..+.+|+.++
T Consensus 117 ~~~L~~L~ls~N~I~-~i~~-l~~l~~L~~L~l~~N~i~-~~~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~ 192 (414)
T KOG0531|consen 117 LVNLQVLDLSFNKIT-KLEG-LSTLTLLKELNLSGNLIS-DISGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELD 192 (414)
T ss_pred hhcchheeccccccc-cccc-hhhccchhhheeccCcch-hccCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHh
Confidence 456666666666665 2222 455555666666666665 3344455666666666666665 22221 35556666666
Q ss_pred cccCcCCCcCCCCcC-CCCcCEEECCCCCCC
Q 010316 479 LQNNNLTGQIPSSLI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 479 L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~ 508 (513)
+++|.+. .+. .+. +..+..+++..|.++
T Consensus 193 l~~n~i~-~i~-~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 193 LGGNSIR-EIE-GLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred ccCCchh-ccc-chHHHHHHHHhhcccccce
Confidence 6666655 222 222 334444455555544
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=2.5e-05 Score=79.80 Aligned_cols=62 Identities=23% Similarity=0.217 Sum_probs=28.7
Q ss_pred ceeEEEeeecCCcCCc--CCChhhhcCcCCCEEEccCCcccccCCCC--CCCCCCCEEEccCccCc
Q 010316 400 RIRIVTLNLTNMGLSG--SLPSNISRLTALSGIWLGNNNLSGTIPDL--SSLMRLETLHLEDNQFS 461 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l--~~l~~L~~L~Ls~N~l~ 461 (513)
+++++.|+|+.|-+.. .+-.-...|++|+.|+|+.|++.-...+. ..+++|+.|.|+.|.|+
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls 210 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS 210 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCC
Confidence 3455555555555441 11122334555555555555554333221 23444555555555544
No 49
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=8.8e-05 Score=75.88 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=49.4
Q ss_pred ceeEEEeeecCCcCC-cCCChhhhcCcCCCEEEccCCccccc-CCCCCCCCCCCEEEccCccCcccCC--ccccCCCCcc
Q 010316 400 RIRIVTLNLTNMGLS-GSLPSNISRLTALSGIWLGNNNLSGT-IPDLSSLMRLETLHLEDNQFSGEIP--SSLGKIQSLR 475 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~-~p~l~~l~~L~~L~Ls~N~l~g~lP--~~l~~l~~L~ 475 (513)
+++++.|.|++|+++ ..+...+..+++|+.|+|..|..-+. --...-+..|+.|||++|++. ..+ ...+.++.|.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchh
Confidence 345555666666554 12222334455555556555531111 011233445555666655554 233 2344555555
Q ss_pred EEEcccCcCCC-cCCCC-----cC-CCCcCEEECCCCCCC
Q 010316 476 ELFLQNNNLTG-QIPSS-----LI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 476 ~L~L~~N~l~g-~lp~~-----l~-l~~L~~L~l~~N~l~ 508 (513)
.|+++.+.+.. .+|+. .. +++|+.|++..|++.
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 55555555541 11222 11 455555555555553
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.92 E-value=0.0013 Score=61.24 Aligned_cols=99 Identities=28% Similarity=0.363 Sum_probs=73.4
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCC-CCCCCCCEEEccCccCcccCC--ccccCCCCccEEE
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDL-SSLMRLETLHLEDNQFSGEIP--SSLGKIQSLRELF 478 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l-~~l~~L~~L~Ls~N~l~g~lP--~~l~~l~~L~~L~ 478 (513)
+...++|++|.+. .++ .|..++.|..|.|.+|.|+..-|.+ ..++.|+.|.|.+|.|. .+- +-+..|++|++|.
T Consensus 43 ~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 5667888888886 333 3677888899999999998877776 45677999999998876 322 2366788899999
Q ss_pred cccCcCCCcCCCC----cC-CCCcCEEECCC
Q 010316 479 LQNNNLTGQIPSS----LI-KPGLNLKTSPG 504 (513)
Q Consensus 479 L~~N~l~g~lp~~----l~-l~~L~~L~l~~ 504 (513)
+-+|+.+ ..+.. +. +++|+.||+.+
T Consensus 120 ll~Npv~-~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVE-HKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchh-cccCceeEEEEecCcceEeehhh
Confidence 8888887 44432 23 78888888764
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.86 E-value=0.0017 Score=60.42 Aligned_cols=83 Identities=28% Similarity=0.365 Sum_probs=66.4
Q ss_pred cCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcccCcCCCcCC---CCcCCCCcCEEE
Q 010316 425 TALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP---SSLIKPGLNLKT 501 (513)
Q Consensus 425 ~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp---~~l~l~~L~~L~ 501 (513)
.....+||+.|.+. .++.|..++.|.+|.|++|.|+..-|.--..+++|+.|.|.+|.|. ++- ....++.|+.|.
T Consensus 42 d~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh-hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence 46778999999986 5667888999999999999999555554445678999999999997 443 222389999999
Q ss_pred CCCCCCCC
Q 010316 502 SPGNQLSS 509 (513)
Q Consensus 502 l~~N~l~~ 509 (513)
+-+|+++.
T Consensus 120 ll~Npv~~ 127 (233)
T KOG1644|consen 120 LLGNPVEH 127 (233)
T ss_pred ecCCchhc
Confidence 99998764
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.84 E-value=0.00056 Score=78.29 Aligned_cols=86 Identities=29% Similarity=0.281 Sum_probs=75.1
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEE
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 477 (513)
..++.++.|||++|.--+.+|..++.|-+|+.|+|++..+...++.+++++.|++|++..+.-...+|..+..|++|++|
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 45789999999998776799999999999999999999999766679999999999999887665677777789999999
Q ss_pred EcccCc
Q 010316 478 FLQNNN 483 (513)
Q Consensus 478 ~L~~N~ 483 (513)
.|-.-.
T Consensus 648 ~l~~s~ 653 (889)
T KOG4658|consen 648 RLPRSA 653 (889)
T ss_pred Eeeccc
Confidence 987554
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.81 E-value=0.00093 Score=64.40 Aligned_cols=95 Identities=26% Similarity=0.413 Sum_probs=54.3
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCC--cccccCCC-CCCCCCCCEEEccCccCcccCCcc---ccCCCCcc
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNN--NLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSS---LGKIQSLR 475 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N--~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~---l~~l~~L~ 475 (513)
.++.|.+.+.+++ .+ ..+..|++|+.|.++.| .+.+.++- ...+++|++|+|++|++. +++. +..+.+|.
T Consensus 44 ~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLK 119 (260)
T ss_pred chhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchh
Confidence 4455555555554 22 13556777788888888 55554443 245577888888888775 2333 34455677
Q ss_pred EEEcccCcCCCcCC----CCcC-CCCcCEEE
Q 010316 476 ELFLQNNNLTGQIP----SSLI-KPGLNLKT 501 (513)
Q Consensus 476 ~L~L~~N~l~g~lp----~~l~-l~~L~~L~ 501 (513)
.|++.+|.-.. +- ..+. +++|.+|+
T Consensus 120 ~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 120 SLDLFNCSVTN-LDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcccCCccc-cccHHHHHHHHhhhhcccc
Confidence 77777766542 21 1122 56666654
No 54
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.0001 Score=71.40 Aligned_cols=65 Identities=28% Similarity=0.408 Sum_probs=30.5
Q ss_pred cCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCc--cccCCCCccEEEcccCcCCCcCC
Q 010316 423 RLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPS--SLGKIQSLRELFLQNNNLTGQIP 489 (513)
Q Consensus 423 ~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~--~l~~l~~L~~L~L~~N~l~g~lp 489 (513)
+|+.|++|.|+-|+|+ .+..+..|++|+.|.|..|.|. .+-+ .+.++++|+.|.|..|.-.|.-+
T Consensus 39 kMp~lEVLsLSvNkIs-sL~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKIS-SLAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred hcccceeEEeeccccc-cchhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccc
Confidence 4455555555555554 2223344455555555555544 2221 34455555555555555544433
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.0017 Score=63.79 Aligned_cols=97 Identities=25% Similarity=0.286 Sum_probs=63.4
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCCCCCCCCCceeEEecCCCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcc
Q 010316 358 TRDVIALETLRNSLQNPPLDWSGDPCLPHGYSWTGITCTYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNL 437 (513)
Q Consensus 358 ~~d~~aL~~l~~~~~~~~~~w~g~pC~~~~~~w~gv~c~~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l 437 (513)
..|++.+.....-+....-.|+.- ..|..|.|....+++++.|+|+.|.+...|...-..+.+|+.|-|.+..+
T Consensus 60 ~gd~~~~~~~~~~v~elDL~~N~i------SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 60 EGDVMLFGSSVTDVKELDLTGNLI------SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred chhHHHHHHHhhhhhhhhcccchh------ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 356555554443332222234321 25888888888889999999999988754443224567888888888887
Q ss_pred cccCCC--CCCCCCCCEEEccCccC
Q 010316 438 SGTIPD--LSSLMRLETLHLEDNQF 460 (513)
Q Consensus 438 ~g~~p~--l~~l~~L~~L~Ls~N~l 460 (513)
....-. +..++.++.|++|.|.+
T Consensus 134 ~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 134 SWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred Chhhhhhhhhcchhhhhhhhccchh
Confidence 655432 46777888888888743
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.90 E-value=0.017 Score=60.19 Aligned_cols=94 Identities=20% Similarity=0.359 Sum_probs=51.5
Q ss_pred eeEEEeeecC-CcCCcCCChhhhcCcCCCEEEccCC-cccccCCCCCCCCCCCEEEccCccCc--ccCCccccCC-----
Q 010316 401 IRIVTLNLTN-MGLSGSLPSNISRLTALSGIWLGNN-NLSGTIPDLSSLMRLETLHLEDNQFS--GEIPSSLGKI----- 471 (513)
Q Consensus 401 ~~l~~L~Ls~-n~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~~p~l~~l~~L~~L~Ls~N~l~--g~lP~~l~~l----- 471 (513)
.+|+.|.+++ +.++ .+|..+. .+|+.|++++| .+.. +| ..|+.|+++.+.+. +.+|.++..|
T Consensus 72 ~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~s-LP-----~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~ 142 (426)
T PRK15386 72 NELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEISG-LP-----ESVRSLEIKGSATDSIKNVPNGLTSLSINSY 142 (426)
T ss_pred CCCcEEEccCCCCcc-cCCchhh--hhhhheEccCcccccc-cc-----cccceEEeCCCCCcccccCcchHhheecccc
Confidence 4578888876 3443 5665443 57888888887 4442 22 24566666655431 2455444322
Q ss_pred -------------CCccEEEcccCcCCCcCCCCcCCCCcCEEECCCC
Q 010316 472 -------------QSLRELFLQNNNLTGQIPSSLIKPGLNLKTSPGN 505 (513)
Q Consensus 472 -------------~~L~~L~L~~N~l~g~lp~~l~l~~L~~L~l~~N 505 (513)
++|++|.+++|... .+|.. .-.+|+.|+++.|
T Consensus 143 n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~-LP~SLk~L~ls~n 187 (426)
T PRK15386 143 NPENQARIDNLISPSLKTLSLTGCSNI-ILPEK-LPESLQSITLHIE 187 (426)
T ss_pred ccccccccccccCCcccEEEecCCCcc-cCccc-ccccCcEEEeccc
Confidence 25666666665544 33311 2446677776655
No 57
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=95.51 E-value=0.0093 Score=41.46 Aligned_cols=34 Identities=47% Similarity=1.052 Sum_probs=23.6
Q ss_pred chhhHHHHHHHHhcCCCC----CCCCC----CCCCCCCCceeEEecC
Q 010316 358 TRDVIALETLRNSLQNPP----LDWSG----DPCLPHGYSWTGITCT 396 (513)
Q Consensus 358 ~~d~~aL~~l~~~~~~~~----~~w~g----~pC~~~~~~w~gv~c~ 396 (513)
++|.++|++||+.+...+ .+|+. +|| .|.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C-----~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC-----SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC-----CSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe-----eeccEEeC
Confidence 478999999999998532 37864 455 79999995
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.0063 Score=59.84 Aligned_cols=34 Identities=24% Similarity=0.399 Sum_probs=17.4
Q ss_pred eEEEeeecCCcCC-cCCChhhhcCcCCCEEEccCC
Q 010316 402 RIVTLNLTNMGLS-GSLPSNISRLTALSGIWLGNN 435 (513)
Q Consensus 402 ~l~~L~Ls~n~l~-g~ip~~l~~l~~L~~L~Ls~N 435 (513)
+++.|-|.+.++. ......+..++.++.|.++.|
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 5555555555554 233334455555555555555
No 59
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.47 E-value=0.0019 Score=64.66 Aligned_cols=107 Identities=24% Similarity=0.287 Sum_probs=75.9
Q ss_pred eeEEEeeecCCcCCc----CCChhhhcCcCCCEEEccCCcccccCC-----CCCCCCCCCEEEccCccCcccCCccc---
Q 010316 401 IRIVTLNLTNMGLSG----SLPSNISRLTALSGIWLGNNNLSGTIP-----DLSSLMRLETLHLEDNQFSGEIPSSL--- 468 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~~p-----~l~~l~~L~~L~Ls~N~l~g~lP~~l--- 468 (513)
+.+..+.+..|+|.. .+...+..+++|++|||..|-++..-. .+..+++|+.|++++|.+...-...+
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 357778888887752 244567788999999999998874322 25677889999999998875433222
Q ss_pred --cCCCCccEEEcccCcCCC----cCCCCcC-CCCcCEEECCCCCC
Q 010316 469 --GKIQSLRELFLQNNNLTG----QIPSSLI-KPGLNLKTSPGNQL 507 (513)
Q Consensus 469 --~~l~~L~~L~L~~N~l~g----~lp~~l~-l~~L~~L~l~~N~l 507 (513)
...++|+.|.|.+|.++. .+-..+. .+.|..|+|++|.+
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 235789999999998862 2223334 77889999999988
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.22 E-value=0.045 Score=57.10 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=21.0
Q ss_pred CCCCEEEccCccCcccCCccccCCCCccEEEcccC
Q 010316 448 MRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNN 482 (513)
Q Consensus 448 ~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N 482 (513)
.+|+.|++++|... .+|..+. .+|+.|.++.|
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 46777888777765 4454333 47788887765
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.15 E-value=0.012 Score=65.81 Aligned_cols=106 Identities=15% Similarity=0.244 Sum_probs=57.5
Q ss_pred ceeEEEeeecCCcCC-cCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCC--ccccCCCCccE
Q 010316 400 RIRIVTLNLTNMGLS-GSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIP--SSLGKIQSLRE 476 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP--~~l~~l~~L~~ 476 (513)
+|.|++|.+++-.+. ..+.....++++|..||+|+.+++-. -.++.|++|+.|-+.+=.+. .-. ..+.+|++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e-~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFE-SYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCC-chhhHHHHhcccCCCe
Confidence 456666666665553 22333445566677777777666522 23456666666666554443 111 13456667777
Q ss_pred EEcccCcCCCcCC-------CCcC-CCCcCEEECCCCCCC
Q 010316 477 LFLQNNNLTGQIP-------SSLI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 477 L~L~~N~l~g~lp-------~~l~-l~~L~~L~l~~N~l~ 508 (513)
||+|..+.. ..+ +.-. ++.|+.||.++..+.
T Consensus 225 LDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 225 LDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eeccccccc-cchHHHHHHHHhcccCccccEEecCCcchh
Confidence 777655443 111 1111 667777777766543
No 62
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.70 E-value=0.011 Score=59.31 Aligned_cols=109 Identities=24% Similarity=0.310 Sum_probs=82.1
Q ss_pred ceeEEEeeecCCcCCc----CCChhhhcCcCCCEEEccCCcccccCC-----CCCCCCCCCEEEccCccCccc----CCc
Q 010316 400 RIRIVTLNLTNMGLSG----SLPSNISRLTALSGIWLGNNNLSGTIP-----DLSSLMRLETLHLEDNQFSGE----IPS 466 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~~p-----~l~~l~~L~~L~Ls~N~l~g~----lP~ 466 (513)
.+.|+.+..+.|.+.. .+...+...+.|+.+.+..|.|...-- .+..+++|+.|||..|-++-. +..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 4578999999998862 344567778899999999998853211 257899999999999998732 344
Q ss_pred cccCCCCccEEEcccCcCCCcCC----CCcC--CCCcCEEECCCCCCC
Q 010316 467 SLGKIQSLRELFLQNNNLTGQIP----SSLI--KPGLNLKTSPGNQLS 508 (513)
Q Consensus 467 ~l~~l~~L~~L~L~~N~l~g~lp----~~l~--l~~L~~L~l~~N~l~ 508 (513)
.+..+++|+.|+++.+.++..-. ..+. .++|+.|.+.+|.++
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 56778899999999999873322 2222 678999999999875
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.47 E-value=0.014 Score=34.28 Aligned_cols=19 Identities=47% Similarity=0.719 Sum_probs=9.6
Q ss_pred CCEEEccCccCcccCCcccc
Q 010316 450 LETLHLEDNQFSGEIPSSLG 469 (513)
Q Consensus 450 L~~L~Ls~N~l~g~lP~~l~ 469 (513)
|++|+|++|+++ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4554443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.41 E-value=0.017 Score=55.78 Aligned_cols=80 Identities=21% Similarity=0.251 Sum_probs=60.5
Q ss_pred CceeEEEeeecCC--cCCcCCChhhhcCcCCCEEEccCCcccc--cCCCCCCCCCCCEEEccCccCcccCCc----cccC
Q 010316 399 RRIRIVTLNLTNM--GLSGSLPSNISRLTALSGIWLGNNNLSG--TIPDLSSLMRLETLHLEDNQFSGEIPS----SLGK 470 (513)
Q Consensus 399 ~l~~l~~L~Ls~n--~l~g~ip~~l~~l~~L~~L~Ls~N~l~g--~~p~l~~l~~L~~L~Ls~N~l~g~lP~----~l~~ 470 (513)
.+++|+.|.++.| ++.+.++....++++|++|+|++|++.- .++.+..+.+|..|++.+|..++ +-. .+..
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHHHHH
Confidence 3568999999999 7777777777888999999999999973 23346778888999999988764 221 2455
Q ss_pred CCCccEEEc
Q 010316 471 IQSLRELFL 479 (513)
Q Consensus 471 l~~L~~L~L 479 (513)
+++|++|+-
T Consensus 142 l~~L~~LD~ 150 (260)
T KOG2739|consen 142 LPSLKYLDG 150 (260)
T ss_pred hhhhccccc
Confidence 677877754
No 65
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.69 E-value=0.0019 Score=61.32 Aligned_cols=84 Identities=21% Similarity=0.147 Sum_probs=63.5
Q ss_pred ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEc
Q 010316 400 RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFL 479 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 479 (513)
..+++.||++.|.+. .+...+..++.|..|+++.|++...+.+++++..+..+++-.|+++ ..|.++++++.++.+++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 457888888888876 5666677777788888888887766666777777777777777777 77888888888888777
Q ss_pred ccCcCC
Q 010316 480 QNNNLT 485 (513)
Q Consensus 480 ~~N~l~ 485 (513)
-.|.|.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 777754
No 66
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.14 E-value=0.0036 Score=59.48 Aligned_cols=87 Identities=22% Similarity=0.237 Sum_probs=70.5
Q ss_pred hhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcccCcCCCcCCCCcC-CCCcC
Q 010316 420 NISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSLI-KPGLN 498 (513)
Q Consensus 420 ~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~ 498 (513)
++......+.||++.|++...-..++.++.|..|+++.|++. .+|..++++..+.++++.+|+++ ..|.++. ++.++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 456667778888888888766566777888888888888887 78888888888888888888888 8888888 88888
Q ss_pred EEECCCCCCC
Q 010316 499 LKTSPGNQLS 508 (513)
Q Consensus 499 ~L~l~~N~l~ 508 (513)
.+++.+|.|.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 8888887653
No 67
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.32 E-value=0.079 Score=59.44 Aligned_cols=87 Identities=22% Similarity=0.282 Sum_probs=67.7
Q ss_pred CceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccc--cCCCCCCCCCCCEEEccCccCcccCC-------cccc
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSG--TIPDLSSLMRLETLHLEDNQFSGEIP-------SSLG 469 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g--~~p~l~~l~~L~~L~Ls~N~l~g~lP-------~~l~ 469 (513)
++++|..||+|+.+++ .+ ..+++|++|+.|.+.+=.+.. .+-++..|++|+.||+|..... ..+ +.-.
T Consensus 171 sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~ 247 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGM 247 (699)
T ss_pred ccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcc
Confidence 4679999999999998 44 678999999999998887763 2335789999999999987654 222 1223
Q ss_pred CCCCccEEEcccCcCCCcC
Q 010316 470 KIQSLRELFLQNNNLTGQI 488 (513)
Q Consensus 470 ~l~~L~~L~L~~N~l~g~l 488 (513)
.|++|+.||.+++.+...+
T Consensus 248 ~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 248 VLPELRFLDCSGTDINEEI 266 (699)
T ss_pred cCccccEEecCCcchhHHH
Confidence 5889999999998876443
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.83 E-value=0.1 Score=50.92 Aligned_cols=85 Identities=20% Similarity=0.255 Sum_probs=44.7
Q ss_pred hhcCcCCCEEEccCCcccccCCC-----CCCCCCCCEEEccCccCcccCCc-c-------------ccCCCCccEEEccc
Q 010316 421 ISRLTALSGIWLGNNNLSGTIPD-----LSSLMRLETLHLEDNQFSGEIPS-S-------------LGKIQSLRELFLQN 481 (513)
Q Consensus 421 l~~l~~L~~L~Ls~N~l~g~~p~-----l~~l~~L~~L~Ls~N~l~g~lP~-~-------------l~~l~~L~~L~L~~ 481 (513)
+.+|++|+..+||.|.+....|+ ++..+.|.+|.|++|.+. .+.. . ...-+.|+....+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 45566666666666666554442 355566666666666653 2111 1 12234566666666
Q ss_pred CcCCCcCCCCcC------CCCcCEEECCCCCC
Q 010316 482 NNLTGQIPSSLI------KPGLNLKTSPGNQL 507 (513)
Q Consensus 482 N~l~g~lp~~l~------l~~L~~L~l~~N~l 507 (513)
|+|. ..|.... -.+|+.+.+..|-|
T Consensus 167 NRle-ngs~~~~a~~l~sh~~lk~vki~qNgI 197 (388)
T COG5238 167 NRLE-NGSKELSAALLESHENLKEVKIQQNGI 197 (388)
T ss_pred chhc-cCcHHHHHHHHHhhcCceeEEeeecCc
Confidence 6665 3332221 23455555555544
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.73 E-value=0.079 Score=31.03 Aligned_cols=20 Identities=55% Similarity=0.620 Sum_probs=16.2
Q ss_pred CccEEEcccCcCCCcCCCCcC
Q 010316 473 SLRELFLQNNNLTGQIPSSLI 493 (513)
Q Consensus 473 ~L~~L~L~~N~l~g~lp~~l~ 493 (513)
+|++|+|++|+|+ .+|..+.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 4788999999998 8887754
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.57 E-value=0.0066 Score=59.16 Aligned_cols=81 Identities=22% Similarity=0.250 Sum_probs=60.2
Q ss_pred cCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcccCcCCCcCCCC--cC-CCCcCEEE
Q 010316 425 TALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSS--LI-KPGLNLKT 501 (513)
Q Consensus 425 ~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~~--l~-l~~L~~L~ 501 (513)
.+.+.|++-++.|+ .|.-...|+.|+.|.||-|+++ ++ ..+..|++|++|.|..|.|. .+-+. +. +++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~-DIsic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD-DISICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCcc-HHHHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence 34556666666654 1222367899999999999998 43 34788999999999999998 55433 33 89999999
Q ss_pred CCCCCCCC
Q 010316 502 SPGNQLSS 509 (513)
Q Consensus 502 l~~N~l~~ 509 (513)
|..|+=.+
T Consensus 95 L~ENPCc~ 102 (388)
T KOG2123|consen 95 LDENPCCG 102 (388)
T ss_pred hccCCccc
Confidence 99997554
No 71
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=90.41 E-value=0.37 Score=47.18 Aligned_cols=106 Identities=20% Similarity=0.308 Sum_probs=70.4
Q ss_pred CceeEEEeeecCCcCCcCCChhhh----cCcCCCEEEccCCcccccCCC--------------CCCCCCCCEEEccCccC
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNIS----RLTALSGIWLGNNNLSGTIPD--------------LSSLMRLETLHLEDNQF 460 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~----~l~~L~~L~Ls~N~l~g~~p~--------------l~~l~~L~~L~Ls~N~l 460 (513)
++++++..+||.|.+....|+.+. .-+.|.+|.|++|.+.-.--. ...-+.|+......|++
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 347899999999999877777544 557899999999988522111 23457788888888887
Q ss_pred cccCCc-----cccCCCCccEEEcccCcCCCcCCCC--------cC-CCCcCEEECCCCCCC
Q 010316 461 SGEIPS-----SLGKIQSLRELFLQNNNLTGQIPSS--------LI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 461 ~g~lP~-----~l~~l~~L~~L~L~~N~l~g~lp~~--------l~-l~~L~~L~l~~N~l~ 508 (513)
. ..|. .+.....|+.+.+..|.|. |.. +. +.+|+.||+..|-|+
T Consensus 170 e-ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 170 E-NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred c-cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchh
Confidence 5 2222 1222246777777777665 331 22 567777777777654
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.96 E-value=0.2 Score=27.42 Aligned_cols=9 Identities=56% Similarity=0.600 Sum_probs=3.0
Q ss_pred cEEEcccCc
Q 010316 475 RELFLQNNN 483 (513)
Q Consensus 475 ~~L~L~~N~ 483 (513)
+.|+|++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 73
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.05 E-value=0.034 Score=54.84 Aligned_cols=102 Identities=25% Similarity=0.237 Sum_probs=56.3
Q ss_pred eeEEEeeecCC-cCCc-CCChhhhcCcCCCEEEccCCcccccCCC-----C-------------------------CCCC
Q 010316 401 IRIVTLNLTNM-GLSG-SLPSNISRLTALSGIWLGNNNLSGTIPD-----L-------------------------SSLM 448 (513)
Q Consensus 401 ~~l~~L~Ls~n-~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-----l-------------------------~~l~ 448 (513)
..++.|+|+.+ +++. .+.--+.+|+.|..|+|+++.+....-. + ..++
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp 313 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP 313 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence 46888888864 4441 1223467889999999999876543210 0 1245
Q ss_pred CCCEEEccCcc-CcccCCccccCCCCccEEEcccCcCCCcCCCCcC----CCCcCEEECCC
Q 010316 449 RLETLHLEDNQ-FSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSLI----KPGLNLKTSPG 504 (513)
Q Consensus 449 ~L~~L~Ls~N~-l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~~l~----l~~L~~L~l~~ 504 (513)
+|..||||.|. ++...-..|-+++.|++|.|+.+.. .+|..+. .++|.+|+.-+
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred ceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 55566666542 3322233445556666666655442 2343332 55566666544
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.01 E-value=0.2 Score=27.41 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=11.5
Q ss_pred CCcCEEECCCCCCCCCC
Q 010316 495 PGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 495 ~~L~~L~l~~N~l~~~p 511 (513)
++|+.|++++|+|+.+|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998875
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.40 E-value=1.6 Score=37.20 Aligned_cols=99 Identities=19% Similarity=0.241 Sum_probs=53.1
Q ss_pred eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCccEEEc
Q 010316 401 IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFL 479 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 479 (513)
.+++.+.+.. .+...-...|.++++|+.+.+.++ +..... .+..+..|+.+.+.+ .+...-...+..+++|+.+.+
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 4677777764 455344446788888999998875 443222 367787889998876 443223345667889999988
Q ss_pred ccCcCCCcCCCCcC-CCCcCEEECCC
Q 010316 480 QNNNLTGQIPSSLI-KPGLNLKTSPG 504 (513)
Q Consensus 480 ~~N~l~g~lp~~l~-l~~L~~L~l~~ 504 (513)
..+ +. .++.... -..|+.+.+..
T Consensus 89 ~~~-~~-~i~~~~f~~~~l~~i~~~~ 112 (129)
T PF13306_consen 89 PSN-IT-EIGSSSFSNCNLKEINIPS 112 (129)
T ss_dssp TTT--B-EEHTTTTTT-T--EEE-TT
T ss_pred Ccc-cc-EEchhhhcCCCceEEEECC
Confidence 765 55 4544444 33788887765
No 76
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=86.82 E-value=0.24 Score=48.38 Aligned_cols=108 Identities=18% Similarity=0.206 Sum_probs=65.1
Q ss_pred EEEEEeeccCCCCC---CCCCCCCCCCCccccc-CCCCCCCCccceeeccCCCCCCChHHHHHhhhcCCCCCccEEEcCC
Q 010316 189 LRLIARHSFGYSGA---DNIRYPDDPFDRFWEP-LVDNKKPEPGNLNVSVSGFWNLPPSKIFKTALATRPAERMELTWPP 264 (513)
Q Consensus 189 l~~~~R~n~G~~~~---~~i~~~~D~~dR~W~~-~~~~~~~~~~~~~i~~~~~~~~~P~~V~~TA~~~~~~~~~~~tw~~ 264 (513)
...++.+|+||... ..|+|..|+.-- .. ..+++... .+... -+.--...|||+|--. ..|- +..
T Consensus 58 ~svI~aVncGgdaavd~ygI~f~aD~~~~--VGrasd~G~~l----~i~~r--aeeed~ily~ter~ne--etFg--yd~ 125 (355)
T KOG3593|consen 58 SSVIPAVNCGGDAAVDNYGIRFAADPLEG--VGRASDYGMVL----GIGCR--AEEEDIILYQTERYNE--ETFG--YDV 125 (355)
T ss_pred hhhhheeccCChhhhcccceEeecccccc--ccccCCcccee----ecccc--CChhhhhhhhhcccch--hhhc--ccc
Confidence 34678899998531 358888888422 11 11121111 11110 0112347899998742 2233 333
Q ss_pred CCCCCcceEEEEEeecCCCCCCCceEEEEEEEC-CeecCCCccccc
Q 010316 265 VFLSSSRYYIALYFADNPSSSREGTRVFDIIIN-GIPYHRNLNVTP 309 (513)
Q Consensus 265 ~~~~~~~y~v~lhFae~~~~~~~~~R~F~i~in-~~~~~~~~~~~~ 309 (513)
+.+..-+|-+.|-|||.. .++.+..+|+|-+| +..+.+.+|+..
T Consensus 126 pik~dgdyalvlkfaevy-F~~~q~kvfdvrln~sh~vVk~ldi~~ 170 (355)
T KOG3593|consen 126 PIKEDGDYALVLKFAEVY-FKTCQHKVFDVRLNCSHCVVKALDIFD 170 (355)
T ss_pred cccCCCceehhhhHHHHH-HHhhhhhheeeeeccceeEEeccchhh
Confidence 455667899999999943 44567899999999 777777777544
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.13 E-value=0.51 Score=28.61 Aligned_cols=13 Identities=62% Similarity=0.787 Sum_probs=6.2
Q ss_pred CccEEEcccCcCC
Q 010316 473 SLRELFLQNNNLT 485 (513)
Q Consensus 473 ~L~~L~L~~N~l~ 485 (513)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.13 E-value=0.51 Score=28.61 Aligned_cols=13 Identities=62% Similarity=0.787 Sum_probs=6.2
Q ss_pred CccEEEcccCcCC
Q 010316 473 SLRELFLQNNNLT 485 (513)
Q Consensus 473 ~L~~L~L~~N~l~ 485 (513)
+|+.|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 79
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=85.90 E-value=0.088 Score=52.05 Aligned_cols=80 Identities=20% Similarity=0.174 Sum_probs=55.9
Q ss_pred eeEEEeeecCCcCC---cCCChhhhcCcCCCEEEccCCcccc--cCCCCCCCCCCCEEEccCccCcccCCcc---ccCCC
Q 010316 401 IRIVTLNLTNMGLS---GSLPSNISRLTALSGIWLGNNNLSG--TIPDLSSLMRLETLHLEDNQFSGEIPSS---LGKIQ 472 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~---g~ip~~l~~l~~L~~L~Ls~N~l~g--~~p~l~~l~~L~~L~Ls~N~l~g~lP~~---l~~l~ 472 (513)
..++.|+|++..-. ..+..-..+++.|.+|||+.|..-. .+..+.+++.|++|.|+.|-. .+|+. +...+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~p 363 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKP 363 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCc
Confidence 46888999875421 1333345678999999999875422 222467899999999988764 45654 55678
Q ss_pred CccEEEcccC
Q 010316 473 SLRELFLQNN 482 (513)
Q Consensus 473 ~L~~L~L~~N 482 (513)
+|.+|++-+.
T Consensus 364 sl~yLdv~g~ 373 (419)
T KOG2120|consen 364 SLVYLDVFGC 373 (419)
T ss_pred ceEEEEeccc
Confidence 9999987653
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.94 E-value=0.81 Score=27.68 Aligned_cols=19 Identities=47% Similarity=0.559 Sum_probs=17.0
Q ss_pred CCCcCEEECCCCCCCCCCC
Q 010316 494 KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 494 l~~L~~L~l~~N~l~~~pp 512 (513)
+++|+.|+|++|+|+.+|+
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4689999999999999876
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.94 E-value=0.81 Score=27.68 Aligned_cols=19 Identities=47% Similarity=0.559 Sum_probs=17.0
Q ss_pred CCCcCEEECCCCCCCCCCC
Q 010316 494 KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 494 l~~L~~L~l~~N~l~~~pp 512 (513)
+++|+.|+|++|+|+.+|+
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 4689999999999999876
No 82
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=81.14 E-value=4.5 Score=34.43 Aligned_cols=82 Identities=18% Similarity=0.245 Sum_probs=49.4
Q ss_pred hhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcccCcCCCcCCC-CcC-CCC
Q 010316 420 NISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPS-SLI-KPG 496 (513)
Q Consensus 420 ~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~-~l~-l~~ 496 (513)
.|.++++|+.+.+.. .+..... .|..+.+|+.+.+..+ +...-...+..+++|+.+.+.+ .+. .++. .+. +.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 577888999999885 4554333 3788889999999886 6533334677888999999976 444 3444 444 889
Q ss_pred cCEEECCCC
Q 010316 497 LNLKTSPGN 505 (513)
Q Consensus 497 L~~L~l~~N 505 (513)
|+.+.+..+
T Consensus 83 l~~i~~~~~ 91 (129)
T PF13306_consen 83 LKNIDIPSN 91 (129)
T ss_dssp ECEEEETTT
T ss_pred ccccccCcc
Confidence 999998765
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=70.24 E-value=0.51 Score=28.04 Aligned_cols=13 Identities=54% Similarity=0.774 Sum_probs=4.8
Q ss_pred CCCEEEccCccCc
Q 010316 449 RLETLHLEDNQFS 461 (513)
Q Consensus 449 ~L~~L~Ls~N~l~ 461 (513)
+|+.|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.43 E-value=3.3 Score=25.42 Aligned_cols=17 Identities=53% Similarity=0.804 Sum_probs=10.1
Q ss_pred CccEEEcccCcCCCcCCC
Q 010316 473 SLRELFLQNNNLTGQIPS 490 (513)
Q Consensus 473 ~L~~L~L~~N~l~g~lp~ 490 (513)
+|+.|++++|+|+ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4566666666666 5554
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.77 E-value=0.99 Score=42.38 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=54.7
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCccccc--CCCC-CCCCCCCEEEccCc-cCcccCCccccCCCCccEE
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGT--IPDL-SSLMRLETLHLEDN-QFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~--~p~l-~~l~~L~~L~Ls~N-~l~g~lP~~l~~l~~L~~L 477 (513)
.|+.++-++..|..+-=+.+.++++++.|.+.+++--+. +..+ +..++|+.|+|++| +||..--..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 577888888877655555677888888888888765322 1112 34678999999987 4553333456777888877
Q ss_pred Eccc
Q 010316 478 FLQN 481 (513)
Q Consensus 478 ~L~~ 481 (513)
.|.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7654
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=57.69 E-value=8.6 Score=23.58 Aligned_cols=14 Identities=36% Similarity=0.496 Sum_probs=7.1
Q ss_pred CCccEEEcccCcCC
Q 010316 472 QSLRELFLQNNNLT 485 (513)
Q Consensus 472 ~~L~~L~L~~N~l~ 485 (513)
.+|+.|+|+.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555543
No 87
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=56.61 E-value=2.6 Score=44.71 Aligned_cols=85 Identities=26% Similarity=0.195 Sum_probs=46.0
Q ss_pred ceeEEEeeecCC-cCCcCC----ChhhhcCcCCCEEEccCCcc-ccc-CCCC-CCCCCCCEEEccCcc-Cccc-CCcccc
Q 010316 400 RIRIVTLNLTNM-GLSGSL----PSNISRLTALSGIWLGNNNL-SGT-IPDL-SSLMRLETLHLEDNQ-FSGE-IPSSLG 469 (513)
Q Consensus 400 l~~l~~L~Ls~n-~l~g~i----p~~l~~l~~L~~L~Ls~N~l-~g~-~p~l-~~l~~L~~L~Ls~N~-l~g~-lP~~l~ 469 (513)
.++++.|+++++ ...... ......++.|+.|+++.... +.. +..+ ..+++|+.|.+.++. ++.. +-....
T Consensus 213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~ 292 (482)
T KOG1947|consen 213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE 292 (482)
T ss_pred CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH
Confidence 457788887762 111111 12344567778888887763 211 1112 236778888766665 4422 111233
Q ss_pred CCCCccEEEcccCcC
Q 010316 470 KIQSLRELFLQNNNL 484 (513)
Q Consensus 470 ~l~~L~~L~L~~N~l 484 (513)
.++.|++|+|+.+..
T Consensus 293 ~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 293 RCPSLRELDLSGCHG 307 (482)
T ss_pred hcCcccEEeeecCcc
Confidence 566788888876544
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=46.99 E-value=14 Score=22.76 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=7.6
Q ss_pred CCCEEEccCccCc
Q 010316 449 RLETLHLEDNQFS 461 (513)
Q Consensus 449 ~L~~L~Ls~N~l~ 461 (513)
+|+.|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4566666666554
No 89
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=46.46 E-value=2.2e+02 Score=25.61 Aligned_cols=82 Identities=21% Similarity=0.259 Sum_probs=40.0
Q ss_pred EEecccCCeEeEEEEEEecCCCCCCCCCeEEEEEeceeeEEEEecccccCCcceEEEEEEEecCCceeEEEEecCCC---
Q 010316 84 VVPVFRGGKYLVRTTYFYGGVNGRDSPPVFDQMVDGTFWSEVNTTVDYVHGLASYYEGVFLAQGKHMSLCIGSNNYT--- 160 (513)
Q Consensus 84 ~~~~~~~~~ylvRl~F~y~nyd~~~~~p~F~v~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~~~~~cl~~~~~~--- 160 (513)
+|.+++|..| +|+|.++. +-.......|.++......+........+.-..+.+.|.+..+. +.|.|...+
T Consensus 72 ~~~t~~G~~Y--~LtF~~~~--~~~~~~~l~V~v~~~~~~~~~~~~~~~~~~w~~~s~~F~A~~t~--~~l~f~~~~~~~ 145 (159)
T PF04862_consen 72 TFTTVPGSTY--TLTFSLAR--NCAQSESLSVSVGGQFSFVVTIQTSYGSGGWDTYSFTFTASSTR--ITLTFHNPGMES 145 (159)
T ss_pred EEEccCCCEE--EEEEEecC--CCCCCccEEEEEecccceEEEeeccCCCCCcEEEEEEEEeCCCE--EEEEEECCCccC
Confidence 5667778888 89999882 22222346777776422222221111111123345666664444 444443321
Q ss_pred CC--CCceeeeEe
Q 010316 161 DS--DPFISALEF 171 (513)
Q Consensus 161 ~s--~pFIn~iEl 171 (513)
+. -|+|-.+.|
T Consensus 146 d~~cGp~iDnV~v 158 (159)
T PF04862_consen 146 DSACGPVIDNVSV 158 (159)
T ss_pred CCCceeEEEEEEe
Confidence 11 266655554
No 90
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=45.24 E-value=1.8e+02 Score=24.34 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=45.2
Q ss_pred CCCcceE-EecccCCeEeEEEEEEecCCCCCCCCCeEEEEEec---eeeEEEEecccccCCcceEEEE--EEEecCCcee
Q 010316 78 HQKFCYV-VPVFRGGKYLVRTTYFYGGVNGRDSPPVFDQMVDG---TFWSEVNTTVDYVHGLASYYEG--VFLAQGKHMS 151 (513)
Q Consensus 78 ~~~~~Y~-~~~~~~~~ylvRl~F~y~nyd~~~~~p~F~v~~~~---~~~~~v~~~~~~~~~~~~~~e~--~~~~~~~~~~ 151 (513)
+.--+|+ +.+..+|.|-|++... +-.+. ..+.|++++ ....++.+... .+...+.+. .+......-.
T Consensus 31 G~~~~~~~Vd~~~~g~y~~~~~~a--~~~~~---~~~~l~id~~~g~~~~~~~~~~t--g~w~~~~~~~~~v~l~~G~h~ 103 (125)
T PF03422_consen 31 GDWIEYNNVDVPEAGTYTLTIRYA--NGGGG---GTIELRIDGPDGTLIGTVSLPPT--GGWDTWQTVSVSVKLPAGKHT 103 (125)
T ss_dssp TTEEEEEEEEESSSEEEEEEEEEE--ESSSS---EEEEEEETTTTSEEEEEEEEE-E--SSTTEEEEEEEEEEEESEEEE
T ss_pred CCEEEEEEEeeCCCceEEEEEEEE--CCCCC---cEEEEEECCCCCcEEEEEEEcCC--CCccccEEEEEEEeeCCCeeE
Confidence 3446888 8888999998775554 32221 479999998 66667765321 222334333 3333345556
Q ss_pred EEEEecCCC
Q 010316 152 LCIGSNNYT 160 (513)
Q Consensus 152 ~cl~~~~~~ 160 (513)
|.|++....
T Consensus 104 i~l~~~~~~ 112 (125)
T PF03422_consen 104 IYLVFNGGD 112 (125)
T ss_dssp EEEEESSSS
T ss_pred EEEEEECCC
Confidence 778776643
No 91
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=44.58 E-value=13 Score=36.77 Aligned_cols=88 Identities=18% Similarity=0.258 Sum_probs=56.8
Q ss_pred EEccCCCCcccccceEEeeCC--C---ccccCCccee--ccC-CCCCCccceeeeCCCCCCCcceEEecccCCeEeEEEE
Q 010316 27 LIDCGTVNVYTINGLKWLPDN--D---YVTGGIPKNV--TVA-VAVPTLSTVRSFPNKLHQKFCYVVPVFRGGKYLVRTT 98 (513)
Q Consensus 27 ~IdCG~~~~~~~~~~~~~~D~--~---~~~~g~~~~~--~~~-~~~~~y~t~R~Fp~~~~~~~~Y~~~~~~~~~ylvRl~ 98 (513)
-|+||.+.-++..|+.|..|. + -.+.|.--.+ .++ ....+|+|+|+= ...+.|..|++..|-|-+=+.
T Consensus 63 aVncGgdaavd~ygI~f~aD~~~~VGrasd~G~~l~i~~raeeed~ily~ter~n----eetFgyd~pik~dgdyalvlk 138 (355)
T KOG3593|consen 63 AVNCGGDAAVDNYGIRFAADPLEGVGRASDYGMVLGIGCRAEEEDIILYQTERYN----EETFGYDVPIKEDGDYALVLK 138 (355)
T ss_pred eeccCChhhhcccceEeeccccccccccCCccceeeccccCChhhhhhhhhcccc----hhhhcccccccCCCceehhhh
Confidence 799999877778899999995 1 0111211111 111 112389999987 346889999999999988888
Q ss_pred EEecCCCCCCCCCeEEEEEec
Q 010316 99 YFYGGVNGRDSPPVFDQMVDG 119 (513)
Q Consensus 99 F~y~nyd~~~~~p~F~v~~~~ 119 (513)
|.---|+. .+--.||+.++-
T Consensus 139 faevyF~~-~q~kvfdvrln~ 158 (355)
T KOG3593|consen 139 FAEVYFKT-CQHKVFDVRLNC 158 (355)
T ss_pred HHHHHHHh-hhhhheeeeecc
Confidence 85222332 111358888874
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.58 E-value=10 Score=40.93 Aligned_cols=63 Identities=32% Similarity=0.375 Sum_probs=41.8
Q ss_pred cCcCCCEEEccCCcccccCC--CC-CCCCCCCEEEccCc--cCcccCCccccCC--CCccEEEcccCcCCCc
Q 010316 423 RLTALSGIWLGNNNLSGTIP--DL-SSLMRLETLHLEDN--QFSGEIPSSLGKI--QSLRELFLQNNNLTGQ 487 (513)
Q Consensus 423 ~l~~L~~L~Ls~N~l~g~~p--~l-~~l~~L~~L~Ls~N--~l~g~lP~~l~~l--~~L~~L~L~~N~l~g~ 487 (513)
+.+.+..++|++|++...-. .+ ...++|+.|+|++| .+. .. .++.++ ..|++|-|.+|++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~-~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SE-SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-ch-hhhhhhcCCCHHHeeecCCccccc
Confidence 34567788899999874322 22 45688999999999 443 11 223333 3588999999988643
No 93
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=36.65 E-value=3e+02 Score=24.22 Aligned_cols=83 Identities=18% Similarity=0.279 Sum_probs=41.7
Q ss_pred cccCCeEeEEEEEEecCCCCCCCCCeEEEEEeceeeE-EEEeccccc--------CCcceEEEEE--EEecCCc-eeEEE
Q 010316 87 VFRGGKYLVRTTYFYGGVNGRDSPPVFDQMVDGTFWS-EVNTTVDYV--------HGLASYYEGV--FLAQGKH-MSLCI 154 (513)
Q Consensus 87 ~~~~~~ylvRl~F~y~nyd~~~~~p~F~v~~~~~~~~-~v~~~~~~~--------~~~~~~~e~~--~~~~~~~-~~~cl 154 (513)
.....+|-||+.+.- +-+ -.+.+..+..... ++++..... -++..+.|+- +...... ..+.|
T Consensus 48 ~~~~~~YrIRiRYAs-~~~-----~~~~i~~~~~~~~~~~~~~~T~~~~~~~~~~y~~F~y~~~~~~~~~~~~~~~~~~i 121 (143)
T PF03944_consen 48 NSSSQKYRIRIRYAS-NSN-----GTLSISINNSSGNLSFNFPSTMSNGDNLTLNYESFQYVEFPTPFTFSSNQSITITI 121 (143)
T ss_dssp SSSTEEEEEEEEEEE-SS------EEEEEEETTEEEECEEEE--SSSTTGGCCETGGG-EEEEESSEEEESTSEEEEEEE
T ss_pred CCCCceEEEEEEEEE-CCC-----cEEEEEECCccceeeeeccccccCCCccccccceeEeeecCceEEecCCCceEEEE
Confidence 345679999999872 212 3566666665443 443221111 1123455653 3333333 33444
Q ss_pred EecCCCC-CCCceeeeEeeecC
Q 010316 155 GSNNYTD-SDPFISALEFVPLE 175 (513)
Q Consensus 155 ~~~~~~~-s~pFIn~iEl~~l~ 175 (513)
......+ +.=+|-.||.+|+.
T Consensus 122 ~i~~~~~~~~v~IDkIEFIPv~ 143 (143)
T PF03944_consen 122 SIQNISSNGNVYIDKIEFIPVN 143 (143)
T ss_dssp EEESSTTTS-EEEEEEEEEECT
T ss_pred EEEecCCCCeEEEEeEEEEeCC
Confidence 3333222 45699999999864
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=32.85 E-value=18 Score=39.01 Aligned_cols=65 Identities=28% Similarity=0.298 Sum_probs=44.2
Q ss_pred CCceeEEEeeecCCcCCc--CCChhhhcCcCCCEEEccCC--ccccc--CCCCCCCCCCCEEEccCccCccc
Q 010316 398 DRRIRIVTLNLTNMGLSG--SLPSNISRLTALSGIWLGNN--NLSGT--IPDLSSLMRLETLHLEDNQFSGE 463 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g--~ip~~l~~l~~L~~L~Ls~N--~l~g~--~p~l~~l~~L~~L~Ls~N~l~g~ 463 (513)
.+.+.|.+++|++|+|.. .+..--...++|+.|+|++| .+... ++.++ ...|+.|.|.+|.+...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k-~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK-GLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc-CCCHHHeeecCCccccc
Confidence 345689999999999862 23333344678999999999 44321 22233 33588999999998644
No 95
>PRK06764 hypothetical protein; Provisional
Probab=28.76 E-value=48 Score=26.41 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=16.3
Q ss_pred CcceEEecccCCeEeEEEE
Q 010316 80 KFCYVVPVFRGGKYLVRTT 98 (513)
Q Consensus 80 ~~~Y~~~~~~~~~ylvRl~ 98 (513)
-+.||+...++|+|.||..
T Consensus 73 lnkyti~f~kpg~yvirvn 91 (105)
T PRK06764 73 LNKYTIRFSKPGKYVIRVN 91 (105)
T ss_pred eeeeEEEecCCccEEEEEc
Confidence 4689999889999999974
No 96
>PF15240 Pro-rich: Proline-rich
Probab=22.50 E-value=58 Score=30.01 Aligned_cols=17 Identities=53% Similarity=0.630 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhccccCC
Q 010316 7 LLLSLLSLLSLSSSQSP 23 (513)
Q Consensus 7 ~~l~l~~~~~~~~~~~~ 23 (513)
|||+-.+|++||+|+..
T Consensus 3 lVLLSvALLALSSAQ~~ 19 (179)
T PF15240_consen 3 LVLLSVALLALSSAQST 19 (179)
T ss_pred hHHHHHHHHHhhhcccc
Confidence 44444555666777544
No 97
>CHL00108 psbJ photosystem II protein J
Probab=22.30 E-value=55 Score=22.10 Aligned_cols=13 Identities=38% Similarity=0.813 Sum_probs=9.5
Q ss_pred EEEEecCCCCCCC
Q 010316 97 TTYFYGGVNGRDS 109 (513)
Q Consensus 97 l~F~y~nyd~~~~ 109 (513)
.-|+||.|.|+.+
T Consensus 26 giFfyGsY~GlGS 38 (40)
T CHL00108 26 GIFFYGSYSGLGS 38 (40)
T ss_pred eeEEeecccccCC
Confidence 3467799998764
No 98
>PRK02565 photosystem II reaction center protein J; Provisional
Probab=21.86 E-value=57 Score=21.90 Aligned_cols=13 Identities=38% Similarity=0.764 Sum_probs=9.4
Q ss_pred EEEEecCCCCCCC
Q 010316 97 TTYFYGGVNGRDS 109 (513)
Q Consensus 97 l~F~y~nyd~~~~ 109 (513)
.-|+||.|.|+.+
T Consensus 25 giFfyGsY~GlGS 37 (39)
T PRK02565 25 GLFFYGSYAGLGS 37 (39)
T ss_pred eeEEeecccccCC
Confidence 3466799998764
Done!