Query 010316
Match_columns 513
No_of_seqs 363 out of 3441
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 04:09:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwp_A Malectin, MGC80075; sug 99.8 8.4E-20 2.9E-24 167.9 15.3 147 24-175 6-172 (174)
2 2jwp_A Malectin, MGC80075; sug 99.8 5.3E-21 1.8E-25 176.0 6.3 146 190-349 5-171 (174)
3 1ogq_A PGIP-2, polygalacturona 99.8 8.8E-19 3E-23 176.1 10.3 154 356-512 3-166 (313)
4 4ecn_A Leucine-rich repeat pro 99.7 2E-17 6.8E-22 187.3 8.8 151 355-509 265-530 (876)
5 4eco_A Uncharacterized protein 99.7 6.9E-17 2.4E-21 177.9 9.3 148 356-509 27-288 (636)
6 3e6j_A Variable lymphocyte rec 99.6 2.9E-15 1E-19 143.5 13.5 124 388-512 19-152 (229)
7 3rgz_A Protein brassinosteroid 99.6 1.9E-15 6.7E-20 169.8 8.6 149 355-510 8-166 (768)
8 1w8a_A SLIT protein; signaling 99.6 7.5E-15 2.6E-19 136.7 11.0 125 387-511 7-142 (192)
9 2v9t_B SLIT homolog 2 protein 99.6 2E-14 6.7E-19 136.9 12.3 126 387-512 10-145 (220)
10 2o6s_A Variable lymphocyte rec 99.5 3.1E-14 1.1E-18 133.8 13.1 126 387-512 6-141 (208)
11 4fcg_A Uncharacterized protein 99.5 6E-16 2.1E-20 156.5 1.2 132 355-489 23-167 (328)
12 2o6r_A Variable lymphocyte rec 99.5 3.2E-14 1.1E-18 130.2 11.4 125 387-512 6-141 (177)
13 2v70_A SLIT-2, SLIT homolog 2 99.5 3.1E-14 1.1E-18 135.5 11.6 125 388-512 11-146 (220)
14 2wfh_A SLIT homolog 2 protein 99.5 5E-14 1.7E-18 131.4 12.1 121 387-509 9-140 (193)
15 4fcg_A Uncharacterized protein 99.5 2.9E-14 9.9E-19 144.1 9.4 112 400-512 182-294 (328)
16 3rgz_A Protein brassinosteroid 99.5 1.6E-14 5.3E-19 162.5 7.9 91 423-513 630-722 (768)
17 2v70_A SLIT-2, SLIT homolog 2 99.5 1.2E-13 4.3E-18 131.3 10.6 113 398-510 54-168 (220)
18 3m19_A Variable lymphocyte rec 99.5 3.7E-13 1.3E-17 130.4 13.2 113 398-510 80-194 (251)
19 2je0_A Acidic leucine-rich nuc 99.5 6.9E-14 2.4E-18 124.2 6.9 112 400-512 16-130 (149)
20 2v9t_B SLIT homolog 2 protein 99.5 3.3E-13 1.1E-17 128.3 12.0 112 398-509 53-166 (220)
21 3m19_A Variable lymphocyte rec 99.4 5.8E-13 2E-17 129.0 13.8 115 398-512 56-172 (251)
22 2ell_A Acidic leucine-rich nuc 99.4 1.1E-13 3.8E-18 125.4 7.5 111 398-512 46-164 (168)
23 3v47_A TOLL-like receptor 5B a 99.4 1.7E-13 5.9E-18 143.8 9.7 131 381-512 2-146 (455)
24 1ogq_A PGIP-2, polygalacturona 99.4 6.2E-14 2.1E-18 140.6 5.9 114 399-512 74-191 (313)
25 3g39_A Variable lymphocyte rec 99.4 5E-13 1.7E-17 121.9 11.3 106 403-511 11-118 (170)
26 1w8a_A SLIT protein; signaling 99.4 4.5E-13 1.5E-17 124.6 10.3 108 402-512 9-119 (192)
27 2o6q_A Variable lymphocyte rec 99.4 8E-13 2.7E-17 129.4 12.4 134 377-511 6-149 (270)
28 3rfs_A Internalin B, repeat mo 99.4 1E-12 3.6E-17 128.8 12.9 123 390-512 97-222 (272)
29 3rfs_A Internalin B, repeat mo 99.4 1.2E-12 4.1E-17 128.4 13.1 114 399-512 83-198 (272)
30 2xot_A Amphoterin-induced prot 99.4 7.4E-13 2.5E-17 135.4 11.4 109 403-511 41-152 (361)
31 2o6s_A Variable lymphocyte rec 99.4 1.6E-12 5.5E-17 122.0 12.6 114 399-512 50-165 (208)
32 2r9u_A Variable lymphocyte rec 99.4 1.3E-12 4.4E-17 119.7 11.1 104 404-511 15-121 (174)
33 3e6j_A Variable lymphocyte rec 99.4 1.5E-12 5E-17 124.6 11.9 112 399-511 62-175 (229)
34 1p9a_G Platelet glycoprotein I 99.4 2.8E-12 9.5E-17 127.2 14.1 109 399-508 98-208 (290)
35 4g8a_A TOLL-like receptor 4; l 99.4 1.7E-12 5.7E-17 141.3 13.3 119 392-510 35-163 (635)
36 1ozn_A Reticulon 4 receptor; N 99.4 4.3E-12 1.5E-16 124.9 13.8 115 398-512 53-170 (285)
37 2wfh_A SLIT homolog 2 protein 99.4 2.5E-12 8.6E-17 119.8 11.3 106 404-512 13-119 (193)
38 2xot_A Amphoterin-induced prot 99.4 2E-12 6.8E-17 132.2 11.4 113 399-512 62-180 (361)
39 2o6q_A Variable lymphocyte rec 99.3 5.6E-12 1.9E-16 123.3 13.3 113 398-510 106-220 (270)
40 1ozn_A Reticulon 4 receptor; N 99.3 3.1E-12 1.1E-16 126.0 11.4 111 399-509 127-239 (285)
41 2z62_A TOLL-like receptor 4, v 99.3 3.1E-12 1E-16 125.4 10.7 116 397-512 72-194 (276)
42 3v47_A TOLL-like receptor 5B a 99.3 3.6E-12 1.2E-16 133.7 11.0 116 397-512 295-412 (455)
43 4g8a_A TOLL-like receptor 4; l 99.3 3.3E-12 1.1E-16 138.9 10.4 123 390-512 64-190 (635)
44 4b8c_D Glucose-repressible alc 99.3 1.4E-12 4.6E-17 145.7 7.3 111 398-512 221-333 (727)
45 2z62_A TOLL-like receptor 4, v 99.3 8.4E-12 2.9E-16 122.3 12.1 115 398-512 49-166 (276)
46 3vq2_A TLR4, TOLL-like recepto 99.3 5.6E-12 1.9E-16 137.3 11.7 115 398-512 77-198 (606)
47 2z66_A Variable lymphocyte rec 99.3 5.3E-12 1.8E-16 125.5 10.6 114 397-510 146-263 (306)
48 1dce_A Protein (RAB geranylger 99.3 2.8E-12 9.7E-17 139.0 9.2 107 402-512 442-550 (567)
49 2ell_A Acidic leucine-rich nuc 99.3 1.8E-12 6.3E-17 117.3 6.2 110 401-512 24-137 (168)
50 1p9a_G Platelet glycoprotein I 99.3 1E-11 3.6E-16 123.1 12.2 120 390-512 67-189 (290)
51 2o6r_A Variable lymphocyte rec 99.3 1.7E-11 5.8E-16 112.0 12.6 108 402-512 8-117 (177)
52 1a9n_A U2A', U2A'; complex (nu 99.3 4.5E-12 1.5E-16 115.9 8.7 106 402-511 20-129 (176)
53 2z66_A Variable lymphocyte rec 99.3 6.6E-12 2.3E-16 124.8 9.8 116 397-512 122-240 (306)
54 2id5_A Lingo-1, leucine rich r 99.3 6.1E-12 2.1E-16 133.0 10.1 108 402-509 33-142 (477)
55 4eco_A Uncharacterized protein 99.3 1.2E-12 4.2E-17 144.0 4.5 123 388-511 193-346 (636)
56 3t6q_A CD180 antigen; protein- 99.3 9.1E-12 3.1E-16 135.6 11.0 120 391-510 15-144 (606)
57 2z81_A CD282 antigen, TOLL-lik 99.3 3.6E-12 1.2E-16 137.0 7.5 105 402-506 27-134 (549)
58 3vq2_A TLR4, TOLL-like recepto 99.3 1.9E-11 6.6E-16 133.0 13.4 113 400-512 55-170 (606)
59 4ezg_A Putative uncharacterize 99.3 5.7E-12 2E-16 117.4 7.1 109 399-511 64-175 (197)
60 1ziw_A TOLL-like receptor 3; i 99.2 2.2E-11 7.5E-16 134.5 12.0 113 400-512 48-162 (680)
61 4ezg_A Putative uncharacterize 99.2 1.4E-11 4.8E-16 114.7 8.9 110 398-510 85-196 (197)
62 3zyj_A Leucine-rich repeat-con 99.2 7.4E-11 2.5E-15 123.6 15.0 110 397-508 181-292 (440)
63 2xwt_C Thyrotropin receptor; s 99.2 1.5E-11 5.1E-16 117.9 8.7 84 402-485 32-118 (239)
64 2id5_A Lingo-1, leucine rich r 99.2 1.7E-11 5.8E-16 129.6 9.8 116 397-512 76-193 (477)
65 3j0a_A TOLL-like receptor 5; m 99.2 1.3E-11 4.5E-16 140.0 9.2 115 398-512 45-165 (844)
66 3zyi_A Leucine-rich repeat-con 99.2 3.2E-11 1.1E-15 126.9 11.5 97 389-485 55-160 (452)
67 2ifg_A High affinity nerve gro 99.2 2.7E-11 9.4E-16 122.6 10.5 100 407-509 14-117 (347)
68 4ecn_A Leucine-rich repeat pro 99.2 3.6E-12 1.2E-16 144.3 4.3 122 388-510 435-588 (876)
69 3g39_A Variable lymphocyte rec 99.2 2.6E-11 8.8E-16 110.4 9.1 100 388-487 9-117 (170)
70 2z80_A TOLL-like receptor 2, v 99.2 1.2E-11 4.1E-16 125.7 7.4 109 402-511 53-166 (353)
71 3oja_B Anopheles plasmodium-re 99.2 4.6E-11 1.6E-15 130.3 12.3 109 402-510 76-186 (597)
72 1wwl_A Monocyte differentiatio 99.2 4E-12 1.4E-16 127.2 3.5 114 398-512 118-245 (312)
73 2z63_A TOLL-like receptor 4, v 99.2 2.6E-11 9E-16 130.6 10.1 115 398-512 418-535 (570)
74 3oja_B Anopheles plasmodium-re 99.2 3.7E-11 1.3E-15 131.0 11.2 118 389-509 86-206 (597)
75 2z63_A TOLL-like receptor 4, v 99.2 3.7E-11 1.3E-15 129.5 10.9 125 389-513 384-512 (570)
76 2ft3_A Biglycan; proteoglycan, 99.2 5.9E-11 2E-15 119.5 11.4 118 387-508 32-160 (332)
77 1ziw_A TOLL-like receptor 3; i 99.2 4.4E-11 1.5E-15 132.1 11.2 114 399-512 71-188 (680)
78 3o6n_A APL1; leucine-rich repe 99.2 6.6E-11 2.3E-15 121.8 11.6 117 390-509 81-200 (390)
79 2je0_A Acidic leucine-rich nuc 99.2 6.8E-12 2.3E-16 111.2 3.6 109 393-504 34-149 (149)
80 1xku_A Decorin; proteoglycan, 99.2 5.7E-11 1.9E-15 119.4 10.6 108 401-509 192-307 (330)
81 3zyi_A Leucine-rich repeat-con 99.2 7.9E-11 2.7E-15 123.8 12.1 110 397-508 192-303 (452)
82 2z80_A TOLL-like receptor 2, v 99.2 2.2E-11 7.7E-16 123.7 7.4 123 389-511 87-214 (353)
83 3o6n_A APL1; leucine-rich repe 99.2 8E-11 2.7E-15 121.2 11.3 107 402-509 70-179 (390)
84 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 6.4E-11 2.2E-15 128.0 10.7 106 401-509 52-160 (562)
85 3oja_A Leucine-rich immune mol 99.2 3E-11 1E-15 128.6 8.0 106 400-508 143-250 (487)
86 1wwl_A Monocyte differentiatio 99.2 2.7E-11 9.4E-16 121.1 7.0 113 397-511 169-290 (312)
87 2xwt_C Thyrotropin receptor; s 99.2 4.2E-11 1.4E-15 114.8 8.0 113 398-512 77-197 (239)
88 3t6q_A CD180 antigen; protein- 99.2 5.9E-11 2E-15 129.2 10.2 115 398-512 78-196 (606)
89 4glp_A Monocyte differentiatio 99.2 2E-11 7E-16 121.8 5.8 112 398-511 166-288 (310)
90 2z81_A CD282 antigen, TOLL-lik 99.2 2.7E-11 9.3E-16 130.1 7.2 113 397-509 70-186 (549)
91 3zyj_A Leucine-rich repeat-con 99.1 1.6E-10 5.6E-15 121.0 12.5 114 397-512 108-224 (440)
92 2z7x_B TOLL-like receptor 1, v 99.1 6.4E-11 2.2E-15 126.5 9.3 107 399-509 372-482 (520)
93 2z7x_B TOLL-like receptor 1, v 99.1 3.1E-11 1E-15 129.0 6.6 104 402-508 22-128 (520)
94 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 1E-10 3.5E-15 126.5 10.5 107 399-509 401-511 (562)
95 2ft3_A Biglycan; proteoglycan, 99.1 1.5E-10 5.1E-15 116.5 10.9 113 395-512 27-140 (332)
96 1h6u_A Internalin H; cell adhe 99.1 1E-10 3.4E-15 116.9 9.4 109 397-512 103-212 (308)
97 1dce_A Protein (RAB geranylger 99.1 7.4E-11 2.5E-15 127.9 9.1 104 397-502 459-567 (567)
98 1a9n_A U2A', U2A'; complex (nu 99.1 2.3E-11 7.8E-16 111.2 4.1 102 402-507 43-152 (176)
99 3j0a_A TOLL-like receptor 5; m 99.1 8.7E-11 3E-15 133.3 9.6 116 397-512 69-191 (844)
100 1h6t_A Internalin B; cell adhe 99.1 1.1E-10 3.7E-15 115.7 8.9 107 398-511 109-216 (291)
101 1xku_A Decorin; proteoglycan, 99.1 2.3E-10 7.7E-15 115.0 11.4 108 401-510 76-186 (330)
102 3o53_A Protein LRIM1, AGAP0063 99.1 1.2E-10 4E-15 116.7 9.1 107 399-508 142-250 (317)
103 2r9u_A Variable lymphocyte rec 99.1 1.8E-10 6E-15 105.4 9.4 102 388-490 12-122 (174)
104 1h6t_A Internalin B; cell adhe 99.1 1.7E-10 5.8E-15 114.3 9.5 108 397-511 86-194 (291)
105 1h6u_A Internalin H; cell adhe 99.1 1.6E-10 5.5E-15 115.4 9.4 166 326-511 67-233 (308)
106 3o53_A Protein LRIM1, AGAP0063 99.1 1.2E-10 4E-15 116.7 8.2 118 390-512 111-231 (317)
107 1xeu_A Internalin C; cellular 99.1 2E-10 6.9E-15 112.1 9.6 105 398-510 60-165 (263)
108 1xeu_A Internalin C; cellular 99.1 3.2E-10 1.1E-14 110.7 10.8 107 397-511 81-188 (263)
109 1m9s_A Internalin B; cell inva 99.1 2.6E-10 8.9E-15 124.4 11.0 107 398-511 106-213 (605)
110 3oja_A Leucine-rich immune mol 99.1 1.7E-10 5.8E-15 122.8 9.1 119 389-512 110-231 (487)
111 1m9s_A Internalin B; cell inva 99.1 1.6E-10 5.6E-15 126.0 8.9 106 399-511 85-191 (605)
112 4b8c_D Glucose-repressible alc 99.1 1.6E-10 5.3E-15 129.0 8.2 95 416-512 215-310 (727)
113 4glp_A Monocyte differentiatio 99.1 8.7E-11 3E-15 117.2 5.0 114 398-512 114-241 (310)
114 4fmz_A Internalin; leucine ric 99.0 1.7E-10 5.9E-15 116.5 7.1 106 398-508 240-346 (347)
115 4fmz_A Internalin; leucine ric 99.0 3.8E-10 1.3E-14 113.9 7.5 109 399-512 219-328 (347)
116 3cvr_A Invasion plasmid antige 99.0 1.4E-09 4.8E-14 117.6 11.4 97 402-512 121-224 (571)
117 1o6v_A Internalin A; bacterial 99.0 6.3E-10 2.2E-14 117.4 8.2 106 399-511 285-391 (466)
118 2ifg_A High affinity nerve gro 99.0 9.6E-10 3.3E-14 111.2 9.1 97 388-485 8-116 (347)
119 1ds9_A Outer arm dynein; leuci 99.0 5.1E-12 1.7E-16 117.8 -7.6 107 399-511 46-156 (198)
120 1o6v_A Internalin A; bacterial 99.0 8.3E-10 2.8E-14 116.5 8.3 108 398-512 262-370 (466)
121 3bz5_A Internalin-J, INLJ; leu 98.9 2.5E-09 8.6E-14 112.8 11.6 95 400-505 63-158 (457)
122 3cvr_A Invasion plasmid antige 98.9 7.7E-10 2.6E-14 119.7 7.3 101 400-512 139-247 (571)
123 4ay9_X Follicle-stimulating ho 98.9 1.3E-09 4.4E-14 110.7 7.2 99 387-485 8-117 (350)
124 1ds9_A Outer arm dynein; leuci 98.9 4.9E-12 1.7E-16 117.9 -10.1 107 398-509 67-186 (198)
125 3bz5_A Internalin-J, INLJ; leu 98.9 7.7E-09 2.6E-13 109.0 12.2 80 399-486 168-247 (457)
126 1jl5_A Outer protein YOPM; leu 98.8 1.1E-08 3.9E-13 107.6 11.6 102 401-512 173-274 (454)
127 3g06_A SSPH2 (leucine-rich rep 98.8 6.7E-09 2.3E-13 113.6 8.4 99 401-511 201-300 (622)
128 2ca6_A RAN GTPase-activating p 98.7 7.7E-10 2.7E-14 113.6 -1.0 112 400-511 186-319 (386)
129 1jl5_A Outer protein YOPM; leu 98.7 3E-08 1E-12 104.4 11.2 101 401-511 131-231 (454)
130 4ay9_X Follicle-stimulating ho 98.7 1.6E-08 5.6E-13 102.5 8.4 106 404-512 12-121 (350)
131 2ast_B S-phase kinase-associat 98.7 7.8E-10 2.7E-14 111.0 -1.5 110 399-508 116-236 (336)
132 2ca6_A RAN GTPase-activating p 98.7 2E-09 6.8E-14 110.6 0.9 109 401-509 159-288 (386)
133 3g06_A SSPH2 (leucine-rich rep 98.7 6.7E-08 2.3E-12 105.6 11.0 98 401-512 61-158 (622)
134 2ast_B S-phase kinase-associat 98.6 3.1E-09 1.1E-13 106.6 -0.0 108 401-509 70-183 (336)
135 3goz_A Leucine-rich repeat-con 98.6 6E-09 2E-13 106.2 0.0 109 401-509 22-152 (362)
136 3goz_A Leucine-rich repeat-con 98.6 5.4E-09 1.9E-13 106.5 -0.3 110 402-511 52-183 (362)
137 1z7x_W Ribonuclease inhibitor; 98.4 1.8E-08 6.1E-13 105.5 -3.6 83 426-508 314-411 (461)
138 1z7x_W Ribonuclease inhibitor; 98.3 6.5E-08 2.2E-12 101.2 -0.6 110 400-509 255-384 (461)
139 3un9_A NLR family member X1; l 98.2 1.4E-07 4.9E-12 96.6 -0.8 108 401-508 126-252 (372)
140 3rw6_A Nuclear RNA export fact 98.1 5.9E-07 2E-11 87.5 1.9 78 422-501 167-257 (267)
141 3rw6_A Nuclear RNA export fact 98.1 1.5E-06 5E-11 84.7 3.7 78 400-478 169-257 (267)
142 3un9_A NLR family member X1; l 98.0 4E-07 1.4E-11 93.3 -1.5 109 401-509 101-225 (372)
143 1io0_A Tropomodulin; LRR prote 98.0 4E-07 1.4E-11 83.7 -1.6 108 401-508 36-164 (185)
144 3sb4_A Hypothetical leucine ri 98.0 1.6E-05 5.5E-10 79.5 8.6 99 401-502 226-328 (329)
145 3ogk_B Coronatine-insensitive 97.9 8.4E-07 2.9E-11 95.8 -1.4 109 401-509 403-527 (592)
146 3sb4_A Hypothetical leucine ri 97.7 6E-05 2.1E-09 75.2 8.7 86 424-512 225-314 (329)
147 3ogk_B Coronatine-insensitive 97.6 1.7E-05 5.9E-10 85.4 3.2 56 401-456 192-251 (592)
148 2ra8_A Uncharacterized protein 97.5 1.2E-05 4.2E-10 81.8 -0.1 109 400-508 192-320 (362)
149 2p1m_B Transport inhibitor res 97.5 4E-06 1.4E-10 90.4 -4.7 106 401-507 397-518 (594)
150 2p1m_B Transport inhibitor res 97.4 1.4E-05 4.7E-10 86.2 -1.1 82 402-483 106-195 (594)
151 1io0_A Tropomodulin; LRR prote 97.3 4.2E-05 1.4E-09 70.0 1.0 93 416-508 27-136 (185)
152 3e4g_A ATP synthase subunit S, 96.8 0.00027 9.2E-09 64.1 1.2 83 401-483 61-150 (176)
153 4fdw_A Leucine rich hypothetic 96.7 0.0039 1.3E-07 64.1 8.8 85 419-507 265-357 (401)
154 3e4g_A ATP synthase subunit S, 96.4 0.00051 1.7E-08 62.3 -0.3 84 425-508 61-153 (176)
155 2ra8_A Uncharacterized protein 96.2 0.0034 1.2E-07 63.6 4.9 107 399-509 170-293 (362)
156 3rfe_A Platelet glycoprotein I 96.2 0.0082 2.8E-07 51.4 6.5 56 428-485 11-68 (130)
157 4fdw_A Leucine rich hypothetic 95.9 0.018 6.2E-07 59.1 8.6 104 399-506 269-381 (401)
158 3rfe_A Platelet glycoprotein I 95.8 0.015 5.2E-07 49.7 6.4 55 405-461 12-68 (130)
159 1pgv_A TMD-1, tropomodulin TMD 95.7 0.0015 5.1E-08 60.3 -0.4 105 402-506 42-168 (197)
160 1pgv_A TMD-1, tropomodulin TMD 93.7 0.015 5E-07 53.6 0.7 86 420-505 36-136 (197)
161 4gt6_A Cell surface protein; l 93.6 0.21 7.2E-06 50.5 9.2 101 401-507 288-390 (394)
162 4h09_A Hypothetical leucine ri 93.1 0.19 6.5E-06 50.4 7.9 59 420-479 281-340 (379)
163 4gt6_A Cell surface protein; l 91.5 0.24 8.2E-06 50.1 6.4 101 401-506 265-368 (394)
164 4fs7_A Uncharacterized protein 90.5 0.33 1.1E-05 49.0 6.3 78 402-482 298-376 (394)
165 4fs7_A Uncharacterized protein 87.7 0.7 2.4E-05 46.6 6.2 82 420-505 292-376 (394)
166 4h09_A Hypothetical leucine ri 87.2 2 6.8E-05 42.8 9.3 102 400-505 239-343 (379)
167 2w47_A Lipolytic enzyme, G-D-S 84.4 17 0.00057 30.9 12.6 91 78-175 39-132 (144)
168 2w3j_A Carbohydrate binding mo 83.7 15 0.0005 31.4 11.9 92 78-176 38-131 (145)
169 2w87_A Esterase D, XYL-CBM35; 75.2 27 0.00093 29.4 10.7 88 79-173 39-130 (139)
170 2vzp_A Aocbm35, EXO-beta-D-glu 72.7 38 0.0013 27.7 11.5 87 78-171 38-127 (127)
171 2wz8_A Cellulosome protein doc 63.8 69 0.0024 27.5 11.0 91 82-174 50-149 (156)
172 2vzp_A Aocbm35, EXO-beta-D-glu 30.7 33 0.0011 28.2 3.2 39 259-301 40-78 (127)
173 2w47_A Lipolytic enzyme, G-D-S 30.6 27 0.00092 29.5 2.6 38 259-300 41-78 (144)
174 2w3j_A Carbohydrate binding mo 29.5 34 0.0012 29.1 3.1 39 259-301 40-78 (145)
175 2o14_A Hypothetical protein YX 22.7 4.5E+02 0.016 25.6 10.5 78 82-176 79-157 (375)
176 2wz8_A Cellulosome protein doc 22.4 67 0.0023 27.6 3.7 42 259-300 48-96 (156)
177 2cdp_A Beta-agarase 1; carbohy 22.1 3.6E+02 0.012 22.8 12.4 87 78-172 66-159 (160)
No 1
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.82 E-value=8.4e-20 Score=167.91 Aligned_cols=147 Identities=15% Similarity=0.078 Sum_probs=103.2
Q ss_pred CceEEccCCCCcccccceEEeeCCCccccCCcc----ee--ccCC--CCCCccceeeeCCCCCCCcceEEecccCCeEeE
Q 010316 24 SGTLIDCGTVNVYTINGLKWLPDNDYVTGGIPK----NV--TVAV--AVPTLSTVRSFPNKLHQKFCYVVPVFRGGKYLV 95 (513)
Q Consensus 24 ~~f~IdCG~~~~~~~~~~~~~~D~~~~~~g~~~----~~--~~~~--~~~~y~t~R~Fp~~~~~~~~Y~~~~~~~~~ylv 95 (513)
..|+||||++...+..||+|.+|..|...|... .+ .... ..++|+|||+||. ..+|.||+.++|+|+|
T Consensus 6 ~~~~INcGg~~~~d~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~----~~tY~f~v~~~G~Y~V 81 (174)
T 2jwp_A 6 VIWAVNAGGESHVDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNED----SFGYDIPIKEEGEYVL 81 (174)
T ss_dssp EEEEEEETSSSEEETTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCS----CEEEEEECCSCEEEEE
T ss_pred EEEEEECCCCCccCCCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCC----CeEEEEEeCCCeEEEE
Confidence 357999999765556899999998664333221 11 1001 1238999999964 8999999988899999
Q ss_pred EEEEEecCCCCCCCCCeEEEEEeceee-EEEEecccccCCcceEEEEEEEecC-----------CceeEEEEecCCCCCC
Q 010316 96 RTTYFYGGVNGRDSPPVFDQMVDGTFW-SEVNTTVDYVHGLASYYEGVFLAQG-----------KHMSLCIGSNNYTDSD 163 (513)
Q Consensus 96 Rl~F~y~nyd~~~~~p~F~v~~~~~~~-~~v~~~~~~~~~~~~~~e~~~~~~~-----------~~~~~cl~~~~~~~s~ 163 (513)
||||..-.|... ....|||++++... ..++.........+.++++.+.+.. ....++|.|.|.....
T Consensus 82 rLhF~ei~~~~~-~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p~~~~~ 160 (174)
T 2jwp_A 82 VLKFAEVYFAQS-QQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYDN 160 (174)
T ss_dssp EEEEECCSCCCS-SSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEECSSSCS
T ss_pred EEEEeccccCCC-CCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEeccCCCC
Confidence 999997777653 34679999999664 4565433222233566777766422 3457899998865568
Q ss_pred CceeeeEeeecC
Q 010316 164 PFISALEFVPLE 175 (513)
Q Consensus 164 pFIn~iEl~~l~ 175 (513)
||||||||++-+
T Consensus 161 a~inaIEI~~~~ 172 (174)
T 2jwp_A 161 PKVCALFIMKGT 172 (174)
T ss_dssp SSEEEEEEESSC
T ss_pred cEEEEEEEEeCc
Confidence 999999999754
No 2
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.82 E-value=5.3e-21 Score=175.96 Aligned_cols=146 Identities=13% Similarity=0.108 Sum_probs=103.3
Q ss_pred EEEEeeccCCCCCCCCCCCCCCCCcccccCCCCC--CCCcc-ceeeccCCCCCCChHHHHHhhhcCCCCCccEEEcCCCC
Q 010316 190 RLIARHSFGYSGADNIRYPDDPFDRFWEPLVDNK--KPEPG-NLNVSVSGFWNLPPSKIFKTALATRPAERMELTWPPVF 266 (513)
Q Consensus 190 ~~~~R~n~G~~~~~~i~~~~D~~dR~W~~~~~~~--~~~~~-~~~i~~~~~~~~~P~~V~~TA~~~~~~~~~~~tw~~~~ 266 (513)
|++||+||||. .+. |..+|+|.+|.... ...+. ...+. ....+.+|..||||||.+. .+++|.|++
T Consensus 5 ~~~~~INcGg~---~~~---d~~gr~w~~D~~~~~~g~~~~~~~~~~-~~~~~~~~~~lY~TaR~~~----~~~tY~f~v 73 (174)
T 2jwp_A 5 KVIWAVNAGGE---SHV---DVHGIHYRKDPLEGRVGRASDYGMKLP-ILRSNPEDQVLYQTERYNE----DSFGYDIPI 73 (174)
T ss_dssp HEEEEEEETSS---SEE---ETTTEEECSSCSSTTCCCCCCCCTTSC-CSSSCHHHHHTTTCCCCCC----SCEEEEEEC
T ss_pred cEEEEEECCCC---Ccc---CCCCCEEcCCcCcccCCcccccccceE-ecccCCCCchhhhhhccCC----CCeEEEEEe
Confidence 68999999976 332 67899999985432 11110 00111 1122457899999999975 378999999
Q ss_pred CCCcceEEEEEeecCCCCCCCceEEEEEEECCeecCCCcccccCc---ceee---eee------------ccCCcceEEE
Q 010316 267 LSSSRYYIALYFADNPSSSREGTRVFDIIINGIPYHRNLNVTPDG---VAVF---ATH------------WPLSGATNIT 328 (513)
Q Consensus 267 ~~~~~y~v~lhFae~~~~~~~~~R~F~i~in~~~~~~~~~~~~~~---~~~~---~~~------------~~~~g~~~l~ 328 (513)
+++..|+|||||||+.. +..++|+|||||||+.+.+++|+.... .+++ ... ...+|.++|+
T Consensus 74 ~~~G~Y~VrLhF~ei~~-~~~~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~ 152 (174)
T 2jwp_A 74 KEEGEYVLVLKFAEVYF-AQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVE 152 (174)
T ss_dssp CSCEEEEEEEEEECCSC-CCSSSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEE
T ss_pred CCCeEEEEEEEEecccc-CCCCCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEE
Confidence 88889999999999875 357899999999999999989875531 1221 111 1245678999
Q ss_pred ecCCCCCCCCCccceeeeeee
Q 010316 329 LNPAPGSNKGPLINGGEIFQV 349 (513)
Q Consensus 329 l~~~~~s~l~p~ln~~ei~~~ 349 (513)
+.|.. ...|+|||+|+++-
T Consensus 153 f~p~~--~~~a~inaIEI~~~ 171 (174)
T 2jwp_A 153 FVKGY--YDNPKVCALFIMKG 171 (174)
T ss_dssp EECSS--SCSSSEEEEEEESS
T ss_pred EeccC--CCCcEEEEEEEEeC
Confidence 98643 45699999999864
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=8.8e-19 Score=176.12 Aligned_cols=154 Identities=33% Similarity=0.584 Sum_probs=131.8
Q ss_pred ccchhhHHHHHHHHhcCCCC--CCCCC--CCCCCCCCceeEEecCCCC-ceeEEEeeecCCcCCc--CCChhhhcCcCCC
Q 010316 356 TLTRDVIALETLRNSLQNPP--LDWSG--DPCLPHGYSWTGITCTYDR-RIRIVTLNLTNMGLSG--SLPSNISRLTALS 428 (513)
Q Consensus 356 t~~~d~~aL~~l~~~~~~~~--~~w~g--~pC~~~~~~w~gv~c~~~~-l~~l~~L~Ls~n~l~g--~ip~~l~~l~~L~ 428 (513)
|.+.|..||.++|+.+.++. .+|.. ++|. +.|.||.|.... ..+|+.|+|++|+++| .+|+.+.++++|+
T Consensus 3 c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~---~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN---RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT---TCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc---CCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 56789999999999997653 27853 4552 349999997532 2589999999999999 8999999999999
Q ss_pred EEEccC-CcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCC
Q 010316 429 GIWLGN-NNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGN 505 (513)
Q Consensus 429 ~L~Ls~-N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N 505 (513)
.|+|++ |.+.+.+|. ++.+++|++|+|++|++++.+|..+..+++|++|+|++|++++.+|..+. +++|+.|++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999995 999988884 88999999999999999999999999999999999999999988998888 999999999999
Q ss_pred CCCCCCC
Q 010316 506 QLSSPPP 512 (513)
Q Consensus 506 ~l~~~pp 512 (513)
++++..|
T Consensus 160 ~l~~~~p 166 (313)
T 1ogq_A 160 RISGAIP 166 (313)
T ss_dssp CCEEECC
T ss_pred cccCcCC
Confidence 9885444
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=2e-17 Score=187.29 Aligned_cols=151 Identities=22% Similarity=0.367 Sum_probs=129.9
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCCC----CCCCCCce------------eEEecCCCCceeEEEeeecCCcCCcCCC
Q 010316 355 RTLTRDVIALETLRNSLQNPPLDWSGDP----CLPHGYSW------------TGITCTYDRRIRIVTLNLTNMGLSGSLP 418 (513)
Q Consensus 355 ~t~~~d~~aL~~l~~~~~~~~~~w~g~p----C~~~~~~w------------~gv~c~~~~l~~l~~L~Ls~n~l~g~ip 418 (513)
.+..+|..||.++|+.+.++ +|+... +.|+.|.| .||.|... .+|+.|+|+++++.|.+|
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~--~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~--~~V~~L~Ls~~~L~G~ip 340 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK--NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN--GRVTGLSLAGFGAKGRVP 340 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG--GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT--SCEEEEECTTTCCEEEEC
T ss_pred ccchHHHHHHHHHHHHcCCC--CCCcCCCcccccCCccccccccccccccCcCceEecCC--CCEEEEECccCCCCCcCc
Confidence 34568999999999999876 675432 22334789 99999863 589999999999999999
Q ss_pred hhhhcCcCCCEEEc-cCCccccc---------------------------------------------------------
Q 010316 419 SNISRLTALSGIWL-GNNNLSGT--------------------------------------------------------- 440 (513)
Q Consensus 419 ~~l~~l~~L~~L~L-s~N~l~g~--------------------------------------------------------- 440 (513)
+.|++|++|+.|+| ++|.+.|.
T Consensus 341 ~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~ 420 (876)
T 4ecn_A 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420 (876)
T ss_dssp GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence 99999999999999 77765544
Q ss_pred -------------------CC-CCCCCCCCCEEEccCccCcc-----------------cCCcccc--CCCCccEEEccc
Q 010316 441 -------------------IP-DLSSLMRLETLHLEDNQFSG-----------------EIPSSLG--KIQSLRELFLQN 481 (513)
Q Consensus 441 -------------------~p-~l~~l~~L~~L~Ls~N~l~g-----------------~lP~~l~--~l~~L~~L~L~~ 481 (513)
+| .++.+++|+.|+|++|+++| .+|..++ ++++|++|+|++
T Consensus 421 ~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~ 500 (876)
T 4ecn_A 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500 (876)
T ss_dssp CCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred cccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC
Confidence 55 47889999999999999998 4999988 999999999999
Q ss_pred CcCCCcCCCCcC-CCCcCEEECCCCC-CCC
Q 010316 482 NNLTGQIPSSLI-KPGLNLKTSPGNQ-LSS 509 (513)
Q Consensus 482 N~l~g~lp~~l~-l~~L~~L~l~~N~-l~~ 509 (513)
|++.|.+|..+. +++|+.|++++|+ +++
T Consensus 501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg 530 (876)
T 4ecn_A 501 CPNMTQLPDFLYDLPELQSLNIACNRGISA 530 (876)
T ss_dssp CTTCCSCCGGGGGCSSCCEEECTTCTTSCH
T ss_pred CCCCccChHHHhCCCCCCEEECcCCCCccc
Confidence 999999999999 9999999999998 876
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.67 E-value=6.9e-17 Score=177.87 Aligned_cols=148 Identities=22% Similarity=0.407 Sum_probs=128.5
Q ss_pred ccchhhHHHHHHHHhcCCCCCC-----------CCCCCCCCCCCce---eEEecCCCCceeEEEeeecCCcCCcCCChhh
Q 010316 356 TLTRDVIALETLRNSLQNPPLD-----------WSGDPCLPHGYSW---TGITCTYDRRIRIVTLNLTNMGLSGSLPSNI 421 (513)
Q Consensus 356 t~~~d~~aL~~l~~~~~~~~~~-----------w~g~pC~~~~~~w---~gv~c~~~~l~~l~~L~Ls~n~l~g~ip~~l 421 (513)
...+|..||.+++++++.+.|. |..+. ..|.| .||.|+.. .+|+.|+|++++++|.+|+++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~---~~c~w~~~~GV~C~~~--~~V~~L~L~~~~l~g~lp~~l 101 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNK---ELDMWGAQPGVSLNSN--GRVTGLSLEGFGASGRVPDAI 101 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSS---CGGGTTCCTTEEECTT--CCEEEEECTTSCCEEEECGGG
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCC---CcccccCCCCeEEcCC--CCEEEEEecCcccCCcCChHH
Confidence 4557999999999998876543 54211 12589 99999765 589999999999999999999
Q ss_pred hcCcCCCEEEccCCc-----------------------------------------------------------------
Q 010316 422 SRLTALSGIWLGNNN----------------------------------------------------------------- 436 (513)
Q Consensus 422 ~~l~~L~~L~Ls~N~----------------------------------------------------------------- 436 (513)
++|++|+.|+|++|.
T Consensus 102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 181 (636)
T 4eco_A 102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181 (636)
T ss_dssp GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccccc
Confidence 999999999999884
Q ss_pred -------------ccccCC-CCCCCCCCCEEEccCccCccc-----------------CCcccc--CCCCccEEEcccCc
Q 010316 437 -------------LSGTIP-DLSSLMRLETLHLEDNQFSGE-----------------IPSSLG--KIQSLRELFLQNNN 483 (513)
Q Consensus 437 -------------l~g~~p-~l~~l~~L~~L~Ls~N~l~g~-----------------lP~~l~--~l~~L~~L~L~~N~ 483 (513)
++| +| .++.+++|+.|+|++|+++|. +|..++ ++++|++|+|++|+
T Consensus 182 ~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~ 260 (636)
T 4eco_A 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260 (636)
T ss_dssp CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT
T ss_pred chhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc
Confidence 445 45 478999999999999999986 999999 99999999999999
Q ss_pred CCCcCCCCcC-CCCcCEEECCCCC-CCC
Q 010316 484 LTGQIPSSLI-KPGLNLKTSPGNQ-LSS 509 (513)
Q Consensus 484 l~g~lp~~l~-l~~L~~L~l~~N~-l~~ 509 (513)
+.|.+|..+. +++|+.|++++|+ +++
T Consensus 261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~ 288 (636)
T 4eco_A 261 NLTKLPTFLKALPEMQLINVACNRGISG 288 (636)
T ss_dssp TCSSCCTTTTTCSSCCEEECTTCTTSCH
T ss_pred CCccChHHHhcCCCCCEEECcCCCCCcc
Confidence 9999999999 9999999999998 876
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=2.9e-15 Score=143.47 Aligned_cols=124 Identities=27% Similarity=0.364 Sum_probs=109.7
Q ss_pred CceeEEecCCCC--------ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCc
Q 010316 388 YSWTGITCTYDR--------RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDN 458 (513)
Q Consensus 388 ~~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N 458 (513)
|.|.+|.|+... .++++.|+|++|.+++..|..+.++++|+.|+|++|++....+. +..+++|+.|+|++|
T Consensus 19 Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 489999997644 24689999999999988888999999999999999999876665 689999999999999
Q ss_pred cCcccCCccccCCCCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 459 QFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 459 ~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
++++..+..+..+++|++|+|++|+|+ .+|..+. +++|+.|++++|+|+++++
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~ 152 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH 152 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH
Confidence 999666667889999999999999999 8898888 9999999999999998875
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.57 E-value=1.9e-15 Score=169.84 Aligned_cols=149 Identities=24% Similarity=0.425 Sum_probs=104.5
Q ss_pred cccchhhHHHHHHHHhcCCCC--CCCC-CCCCCCCCCceeEEecCCCCceeEEEeeecCCcCCcC---CChhhhcCcCCC
Q 010316 355 RTLTRDVIALETLRNSLQNPP--LDWS-GDPCLPHGYSWTGITCTYDRRIRIVTLNLTNMGLSGS---LPSNISRLTALS 428 (513)
Q Consensus 355 ~t~~~d~~aL~~l~~~~~~~~--~~w~-g~pC~~~~~~w~gv~c~~~~l~~l~~L~Ls~n~l~g~---ip~~l~~l~~L~ 428 (513)
...++|.+||+++|+.+.++. .+|. +..| |.|.||.|+. .+|+.|+|+++++.|. +|+.+.+++.|+
T Consensus 8 ~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~----C~w~gv~C~~---~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKNLLPDWSSNKNP----CTFDGVTCRD---DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCG----GGSTTEEEET---TEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred cCCHHHHHHHHHHHhhCCCcccccCCCCCCCC----cCCcceEECC---CcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 345689999999999987653 3795 3344 5899999982 5899999999999987 777777776666
Q ss_pred EEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCc--cccCCCCccEEEcccCcCCCcCCCCc-C-CCCcCEEECCC
Q 010316 429 GIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPS--SLGKIQSLRELFLQNNNLTGQIPSSL-I-KPGLNLKTSPG 504 (513)
Q Consensus 429 ~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~--~l~~l~~L~~L~L~~N~l~g~lp~~l-~-l~~L~~L~l~~ 504 (513)
.++++.|.+...++.++.+++|++|+|++|.++|.+|. .++.+++|++|+|++|.+.+.+|..+ . +++|+.|++++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 66666666544333466666666666666666666666 66666666666666666666666554 3 66666666666
Q ss_pred CCCCCC
Q 010316 505 NQLSSP 510 (513)
Q Consensus 505 N~l~~~ 510 (513)
|++++.
T Consensus 161 n~l~~~ 166 (768)
T 3rgz_A 161 NSISGA 166 (768)
T ss_dssp SCCEEE
T ss_pred CccCCc
Confidence 665543
No 8
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=7.5e-15 Score=136.71 Aligned_cols=125 Identities=20% Similarity=0.243 Sum_probs=110.5
Q ss_pred CCceeEEecCCCCc--------eeEEEeeecCCcCCcCCCh-hhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEcc
Q 010316 387 GYSWTGITCTYDRR--------IRIVTLNLTNMGLSGSLPS-NISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLE 456 (513)
Q Consensus 387 ~~~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls 456 (513)
.|.|..+.|+..++ .+++.|+|++|.+++..+. .+.++++|+.|+|++|++++..|. +..+++|+.|+|+
T Consensus 7 ~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred EECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 46788888876442 3789999999999965554 489999999999999999998774 8999999999999
Q ss_pred CccCcccCCccccCCCCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCC
Q 010316 457 DNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 457 ~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~p 511 (513)
+|++++..|..+..+++|++|+|++|+|++..|..+. +++|+.|++++|++++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 9999988888899999999999999999988898898 999999999999998643
No 9
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.55 E-value=2e-14 Score=136.90 Aligned_cols=126 Identities=24% Similarity=0.225 Sum_probs=100.7
Q ss_pred CCceeEEecCCCCc--------eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccC
Q 010316 387 GYSWTGITCTYDRR--------IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLED 457 (513)
Q Consensus 387 ~~~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~ 457 (513)
.|.|..+.|...++ .+++.|+|++|++++..+..+..+++|+.|+|++|++++..|. +..+++|+.|+|++
T Consensus 10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp EEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred EECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 46778888865442 3678889999998866666788888999999999998887664 78888899999999
Q ss_pred ccCcccCCccccCCCCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 458 NQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 458 N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
|+++...+..+..+++|++|+|++|++++..|..+. +++|+.|+|++|+|+++++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 988844444567888899999999888866677777 8888889998888888775
No 10
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=3.1e-14 Score=133.76 Aligned_cols=126 Identities=25% Similarity=0.277 Sum_probs=98.9
Q ss_pred CCceeEEecCCCC--------ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccC
Q 010316 387 GYSWTGITCTYDR--------RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLED 457 (513)
Q Consensus 387 ~~~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~ 457 (513)
.|.|.++.|...+ .++++.|++++|++++..+..+.++++|+.|++++|++++..+. +..+++|+.|+|++
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 3688999987543 23688899999999866666678889999999999998876665 57888899999999
Q ss_pred ccCcccCCccccCCCCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 458 NQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 458 N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
|++++..+..+..+++|++|+|++|++++..+..+. +++|+.|++++|+++++++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence 988855555678888888888888888844444456 8888888888888887765
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.55 E-value=6e-16 Score=156.47 Aligned_cols=132 Identities=22% Similarity=0.326 Sum_probs=67.8
Q ss_pred cccchhhHHHHHHHHhcCCCCC----CCC-CCCCCCCCCceeEEecCC-------CCceeEEEeeecCCcCCcCCChhhh
Q 010316 355 RTLTRDVIALETLRNSLQNPPL----DWS-GDPCLPHGYSWTGITCTY-------DRRIRIVTLNLTNMGLSGSLPSNIS 422 (513)
Q Consensus 355 ~t~~~d~~aL~~l~~~~~~~~~----~w~-g~pC~~~~~~w~gv~c~~-------~~l~~l~~L~Ls~n~l~g~ip~~l~ 422 (513)
.....|..||.++|..+..... .|. ...|.+..|.|.|+.|.. ....+++.|+|++|+++ .+|+.+.
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~ 101 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF 101 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence 3456788999999987743332 452 112233346899888841 11234555555555555 4555555
Q ss_pred cCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcccCcCCCcCC
Q 010316 423 RLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP 489 (513)
Q Consensus 423 ~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp 489 (513)
++++|+.|+|++|.+. .+| .++.+++|+.|+|++|+++ .+|..+..+++|++|+|++|++.+.+|
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p 167 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP 167 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCC
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccC
Confidence 5555555555555554 333 2444444555555554444 444444444444444444443333333
No 12
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=3.2e-14 Score=130.23 Aligned_cols=125 Identities=22% Similarity=0.273 Sum_probs=107.6
Q ss_pred CCceeEEecCCCC--------ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccC
Q 010316 387 GYSWTGITCTYDR--------RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLED 457 (513)
Q Consensus 387 ~~~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~ 457 (513)
.|.|.++.|...+ .++++.|++++|++++..+..+.++++|+.|+|++|.+++..+. +..+++|+.|+|++
T Consensus 6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3689999997544 24789999999999966666789999999999999999987775 68999999999999
Q ss_pred ccCcccCCccccCCCCccEEEcccCcCCCcCCCC-cC-CCCcCEEECCCCCCCCCCC
Q 010316 458 NQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSS-LI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 458 N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~~-l~-l~~L~~L~l~~N~l~~~pp 512 (513)
|++++..+..+..+++|++|+|++|+++ .+|.. +. +++|+.|++++|++.+.+|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999766677899999999999999999 55554 56 9999999999999987643
No 13
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=3.1e-14 Score=135.53 Aligned_cols=125 Identities=19% Similarity=0.252 Sum_probs=88.8
Q ss_pred CceeEEecCCCCc--------eeEEEeeecCCcCCcCCC-hhhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccC
Q 010316 388 YSWTGITCTYDRR--------IRIVTLNLTNMGLSGSLP-SNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLED 457 (513)
Q Consensus 388 ~~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~ 457 (513)
|.|..+.|+...+ ..++.|+|++|.+++..+ ..+.++++|+.|+|++|++++..+ .+..+++|+.|+|++
T Consensus 11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 5677777765432 245677788887775544 346777778888888887777666 367777777777777
Q ss_pred ccCcccCCccccCCCCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 458 NQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 458 N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
|++++..|..+..+++|++|+|++|++++..|..+. +++|+.|+|++|+|++++|
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 777766666677777777777777777766666666 7777777777777777655
No 14
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=5e-14 Score=131.37 Aligned_cols=121 Identities=24% Similarity=0.290 Sum_probs=106.3
Q ss_pred CCceeEEecCCCC--------ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccC
Q 010316 387 GYSWTGITCTYDR--------RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLED 457 (513)
Q Consensus 387 ~~~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~ 457 (513)
.|.|..+.|+... ..+++.|+|++|.++ .+|..+.++++|+.|+|++|.+++..+. |..+++|+.|+|++
T Consensus 9 ~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 4567788886543 236899999999998 8899999999999999999999988775 89999999999999
Q ss_pred ccCcccCCccccCCCCccEEEcccCcCCCcCCC-CcC-CCCcCEEECCCCCCCC
Q 010316 458 NQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPS-SLI-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 458 N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~-~l~-l~~L~~L~l~~N~l~~ 509 (513)
|++++..|..+..+++|++|+|++|+|+ .+|. .+. +++|+.|++++|++..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeec
Confidence 9999887888999999999999999999 5555 566 9999999999998753
No 15
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.50 E-value=2.9e-14 Score=144.08 Aligned_cols=112 Identities=25% Similarity=0.318 Sum_probs=87.5
Q ss_pred ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEc
Q 010316 400 RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFL 479 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 479 (513)
+++|+.|+|++|+++ .+|..+.++++|+.|+|++|.+++.++.++.+++|+.|+|++|++.+.+|..++.+++|++|+|
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 456777888888887 7777788888888888888888766666777788888888888877778887888888888888
Q ss_pred ccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 480 QNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 480 ~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
++|++.+.+|..+. +++|+.|++++|++.+.+|
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred CCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 88777777787777 8888888888877766665
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.50 E-value=1.6e-14 Score=162.47 Aligned_cols=91 Identities=33% Similarity=0.455 Sum_probs=76.1
Q ss_pred cCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEEEcccCcCCCcCCCCcC-CCCcCEE
Q 010316 423 RLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLK 500 (513)
Q Consensus 423 ~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L 500 (513)
++++|+.|+|++|+++|.+|. ++.+++|+.|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|..+. ++.|+.|
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 356678888888888888874 78888888888888888888888888888888888888888888888888 8888888
Q ss_pred ECCCCCCCCCCCC
Q 010316 501 TSPGNQLSSPPPS 513 (513)
Q Consensus 501 ~l~~N~l~~~pp~ 513 (513)
++++|+++|.+|+
T Consensus 710 ~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 710 DLSNNNLSGPIPE 722 (768)
T ss_dssp ECCSSEEEEECCS
T ss_pred ECcCCcccccCCC
Confidence 8888888887774
No 17
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=131.30 Aligned_cols=113 Identities=19% Similarity=0.219 Sum_probs=103.6
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccE
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRE 476 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 476 (513)
..+++|+.|+|++|.+++..+..|.++++|+.|+|++|.+++..+. +..+++|+.|+|++|++++..|..+..+++|++
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 133 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence 3456899999999999977777899999999999999999988876 789999999999999999888999999999999
Q ss_pred EEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCC
Q 010316 477 LFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSP 510 (513)
Q Consensus 477 L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~ 510 (513)
|+|++|++++..|..+. +++|+.|++++|+++..
T Consensus 134 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 134 LSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp EECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred EECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 99999999977788888 99999999999998653
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.46 E-value=3.7e-13 Score=130.39 Aligned_cols=113 Identities=27% Similarity=0.318 Sum_probs=94.9
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccE
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRE 476 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 476 (513)
..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+. +..+++|+.|+|++|++++..|..+..+++|++
T Consensus 80 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 159 (251)
T 3m19_A 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCE
Confidence 4567889999999999866667788899999999999999877765 588999999999999998666667888999999
Q ss_pred EEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCC
Q 010316 477 LFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSP 510 (513)
Q Consensus 477 L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~ 510 (513)
|+|++|++++..+..+. +++|+.|++++|++++.
T Consensus 160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999999855555676 89999999999998765
No 19
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=6.9e-14 Score=124.20 Aligned_cols=112 Identities=21% Similarity=0.197 Sum_probs=98.5
Q ss_pred ceeEEEeeecCCcCC-cCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEE
Q 010316 400 RIRIVTLNLTNMGLS-GSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELF 478 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 478 (513)
.++++.|++++|.++ +.+|..+..+++|+.|++++|.+++. +.++.+++|+.|+|++|++++.+|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 357899999999998 88999889999999999999999877 7788999999999999999977888888899999999
Q ss_pred cccCcCCCc-CCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 479 LQNNNLTGQ-IPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 479 L~~N~l~g~-lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
|++|++++. .+..+. +++|+.|++++|++++.++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 999999852 336777 9999999999999988775
No 20
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=3.3e-13 Score=128.32 Aligned_cols=112 Identities=17% Similarity=0.215 Sum_probs=101.3
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccE
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRE 476 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 476 (513)
..+++|+.|+|++|.+++..|..|.++++|+.|+|++|.++...+. +..+++|+.|+|++|++++..|..+..+++|++
T Consensus 53 ~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 53 SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence 4567899999999999988899999999999999999999977665 688999999999999999888999999999999
Q ss_pred EEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCC
Q 010316 477 LFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 477 L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~ 509 (513)
|+|++|+|++..+..+. +++|+.|++++|++..
T Consensus 133 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 133 LSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99999999965556677 9999999999998753
No 21
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.45 E-value=5.8e-13 Score=128.97 Aligned_cols=115 Identities=25% Similarity=0.267 Sum_probs=84.5
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccE
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRE 476 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 476 (513)
..+++|+.|+|++|.+++..+..+.++++|+.|+|++|++++..+. +..+++|+.|+|++|++++..+..+..+++|++
T Consensus 56 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 135 (251)
T 3m19_A 56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccE
Confidence 3456777777777777766666677777788888888877766654 577778888888888887555555677888888
Q ss_pred EEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 477 LFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 477 L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
|+|++|++++..+..+. +++|+.|++++|+|+++++
T Consensus 136 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 88888888744444566 7888888888888887765
No 22
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=1.1e-13 Score=125.45 Aligned_cols=111 Identities=26% Similarity=0.366 Sum_probs=76.6
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCC-CCCCCCCEEEccCccCcccCC--ccccCCCCc
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDL-SSLMRLETLHLEDNQFSGEIP--SSLGKIQSL 474 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l-~~l~~L~~L~Ls~N~l~g~lP--~~l~~l~~L 474 (513)
..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+.+|.+ ..+++|+.|+|++|++++ +| ..+..+++|
T Consensus 46 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L 122 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECL 122 (168)
T ss_dssp GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCC
T ss_pred HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCC
Confidence 4456777777777777744 56777777777777777777665653 457777777777777773 33 567777777
Q ss_pred cEEEcccCcCCCcCCC----CcC-CCCcCEEECCCCCCCCCCC
Q 010316 475 RELFLQNNNLTGQIPS----SLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 475 ~~L~L~~N~l~g~lp~----~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
++|+|++|+++ .+|. .+. +++|+.|++++|.+...|.
T Consensus 123 ~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 123 KSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred CEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 77777777777 4444 555 7777777777777766654
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.44 E-value=1.7e-13 Score=143.82 Aligned_cols=131 Identities=21% Similarity=0.244 Sum_probs=93.3
Q ss_pred CCCCCCCCceeE--EecCCCCc-------eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCC--CCCCCCC
Q 010316 381 DPCLPHGYSWTG--ITCTYDRR-------IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP--DLSSLMR 449 (513)
Q Consensus 381 ~pC~~~~~~w~g--v~c~~~~l-------~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p--~l~~l~~ 449 (513)
+|| +..|.|.+ +.|...++ ++++.|+|++|.+++..|..+.++++|+.|+|++|.+.+.++ .+..+++
T Consensus 2 ~p~-~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~ 80 (455)
T 3v47_A 2 DPG-TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80 (455)
T ss_dssp ------CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTT
T ss_pred CCc-cceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccccccc
Confidence 455 23455554 77765442 457888888888887778888888888888888888876554 3677888
Q ss_pred CCEEEccCccCcccCCccccCCCCccEEEcccCcCCCcCCCC--cC-CCCcCEEECCCCCCCCCCC
Q 010316 450 LETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSS--LI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 450 L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~~--l~-l~~L~~L~l~~N~l~~~pp 512 (513)
|++|+|++|++++..|..+.++++|++|+|++|++++.+|.. +. +++|+.|++++|++++.+|
T Consensus 81 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 146 (455)
T 3v47_A 81 LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146 (455)
T ss_dssp CCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC
T ss_pred CCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc
Confidence 888888888888777777888888888888888777644433 55 7777777777777776654
No 24
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.43 E-value=6.2e-14 Score=140.60 Aligned_cols=114 Identities=30% Similarity=0.464 Sum_probs=97.7
Q ss_pred CceeEEEeeecC-CcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccE
Q 010316 399 RRIRIVTLNLTN-MGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRE 476 (513)
Q Consensus 399 ~l~~l~~L~Ls~-n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 476 (513)
.+++|+.|+|++ |++.+.+|..+.++++|++|+|++|.+++.+|. +..+++|++|+|++|++++.+|..+..+++|++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 356788899985 888888999999999999999999999888775 788899999999999998888988989999999
Q ss_pred EEcccCcCCCcCCCCcC-CC-CcCEEECCCCCCCCCCC
Q 010316 477 LFLQNNNLTGQIPSSLI-KP-GLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 477 L~L~~N~l~g~lp~~l~-l~-~L~~L~l~~N~l~~~pp 512 (513)
|+|++|+++|.+|..+. +. .|+.|++++|++++..|
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~ 191 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC
Confidence 99999999888888888 76 88889888888875544
No 25
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=5e-13 Score=121.90 Aligned_cols=106 Identities=22% Similarity=0.270 Sum_probs=89.5
Q ss_pred EEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEEEccc
Q 010316 403 IVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQN 481 (513)
Q Consensus 403 l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~ 481 (513)
.+.+++++|+++ .+|..+. +.|+.|+|++|+|++..|. +..+++|+.|+|++|+|++..|..+..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 356788888888 6787663 8899999999999988775 78999999999999999966666778999999999999
Q ss_pred CcCCCcCCCCcC-CCCcCEEECCCCCCCCCC
Q 010316 482 NNLTGQIPSSLI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 482 N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~p 511 (513)
|+|++..+..+. +++|+.|+|++|+++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999954444576 999999999999987654
No 26
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.42 E-value=4.5e-13 Score=124.58 Aligned_cols=108 Identities=25% Similarity=0.335 Sum_probs=97.5
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC--CCCCCCCCEEEccCccCcccCCccccCCCCccEEEc
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD--LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFL 479 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~--l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 479 (513)
..+.+++++|+++ .+|..+.. .|+.|+|++|++.+..+. +..+++|+.|+|++|++++..|..+..+++|++|+|
T Consensus 9 ~~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 9 EGTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp ETTEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 3468999999997 88886654 899999999999988875 789999999999999999888999999999999999
Q ss_pred ccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 480 QNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 480 ~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
++|+|++..|..+. +++|+.|+|++|+|++++|
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 119 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECT
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCH
Confidence 99999977777787 9999999999999998866
No 27
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.42 E-value=8e-13 Score=129.41 Aligned_cols=134 Identities=25% Similarity=0.304 Sum_probs=69.1
Q ss_pred CCCCCCCCCCCCceeEEecCCCCc--------eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCC
Q 010316 377 DWSGDPCLPHGYSWTGITCTYDRR--------IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSL 447 (513)
Q Consensus 377 ~w~g~pC~~~~~~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l 447 (513)
.|.|..|. +...+..+.|+...+ +.++.|+|++|++++..+..+.++++|+.|+|++|.++...+. +..+
T Consensus 6 ~~~~~~C~-c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l 84 (270)
T 2o6q_A 6 KKDGGVCS-CNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84 (270)
T ss_dssp GGGTCSBE-EETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred CCCCCCCE-eCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCC
Confidence 45555552 112345566653322 2356666666666644444566666666666666666544443 3555
Q ss_pred CCCCEEEccCccCcccCCccccCCCCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCC
Q 010316 448 MRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 448 ~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~p 511 (513)
++|+.|+|++|++++..+..+..+++|++|+|++|++++..+..+. +++|+.|++++|+|++++
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 5666666666655543334445555555555555555533333333 445555555555444443
No 28
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.41 E-value=1e-12 Score=128.81 Aligned_cols=123 Identities=20% Similarity=0.212 Sum_probs=104.5
Q ss_pred eeEEecC-CCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCcc
Q 010316 390 WTGITCT-YDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSS 467 (513)
Q Consensus 390 w~gv~c~-~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~ 467 (513)
..++... ...+++|+.|+|++|.+++..+..+.++++|+.|+|++|.+++..+. +..+++|+.|+|++|++++..|..
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 176 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH
Confidence 3444433 35577899999999999977777789999999999999999987776 688999999999999999777777
Q ss_pred ccCCCCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 468 LGKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 468 l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
+..+++|++|+|++|++++..|..+. +++|+.|++++|++.+..|
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 89999999999999999976666677 9999999999999988765
No 29
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.41 E-value=1.2e-12 Score=128.35 Aligned_cols=114 Identities=25% Similarity=0.205 Sum_probs=94.9
Q ss_pred CceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 477 (513)
.+++|+.|+|++|.+++..+..+.++++|+.|+|++|++++.++. +..+++|+.|+|++|++++..|..+..+++|++|
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 456788999999999876666788899999999999999877775 6888999999999999986666677888999999
Q ss_pred EcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 478 FLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 478 ~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
+|++|++++..+..+. +++|+.|++++|++++++|
T Consensus 163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 9999999855555566 8899999999999988876
No 30
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=7.4e-13 Score=135.44 Aligned_cols=109 Identities=24% Similarity=0.228 Sum_probs=56.7
Q ss_pred EEEeeecCCcCCcCCChhhh-cCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEEEcc
Q 010316 403 IVTLNLTNMGLSGSLPSNIS-RLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480 (513)
Q Consensus 403 l~~L~Ls~n~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 480 (513)
++.|+|++|+|++..+..+. ++++|+.|+|++|+|++..+. +..+++|+.|+|++|+|++..+..+..+++|++|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 45556666665544444444 555555555555555554443 4555555555555555554444445555555555555
Q ss_pred cCcCCCcCCCCcC-CCCcCEEECCCCCCCCCC
Q 010316 481 NNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 481 ~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~p 511 (513)
+|+|++..|..+. +++|+.|+|++|+|+++|
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 5555533344444 555555555555555443
No 31
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=1.6e-12 Score=121.98 Aligned_cols=114 Identities=21% Similarity=0.211 Sum_probs=98.0
Q ss_pred CceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 477 (513)
.+++|+.|++++|.+++..+..+..+++|+.|+|++|++++..+. +..+++|+.|+|++|++++..+..+..+++|++|
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE
Confidence 456899999999999966566678999999999999999977765 6899999999999999996666678999999999
Q ss_pred EcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 478 FLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 478 ~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
+|++|++++..+..+. +++|+.|++++|++.+..|
T Consensus 130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred ECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 9999999954444566 9999999999999887665
No 32
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=1.3e-12 Score=119.69 Aligned_cols=104 Identities=25% Similarity=0.386 Sum_probs=90.0
Q ss_pred EEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEEEcccC
Q 010316 404 VTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNN 482 (513)
Q Consensus 404 ~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N 482 (513)
+.+++++|+++ .+|..+. +.|+.|+|++|++++.+|. +..+++|+.|+|++|+|++..+..+..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57899999997 8888765 8999999999999998775 789999999999999999655555789999999999999
Q ss_pred cCCCcCCCC-cC-CCCcCEEECCCCCCCCCC
Q 010316 483 NLTGQIPSS-LI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 483 ~l~g~lp~~-l~-l~~L~~L~l~~N~l~~~p 511 (513)
+|+ .+|.. +. +++|+.|+|++|++...+
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccc-eeCHHHhccccCCCEEEeCCCCccccc
Confidence 999 55554 77 999999999999998654
No 33
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.39 E-value=1.5e-12 Score=124.61 Aligned_cols=112 Identities=22% Similarity=0.249 Sum_probs=98.5
Q ss_pred CceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 477 (513)
.+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+. +..+++|+.|+|++|+++ .+|..+..+++|++|
T Consensus 62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL 140 (229)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE
T ss_pred CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE
Confidence 456899999999999855556679999999999999999987776 689999999999999999 899999999999999
Q ss_pred EcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCC
Q 010316 478 FLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 478 ~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~p 511 (513)
+|++|+|++..+..+. +++|+.|++++|++....
T Consensus 141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9999999944445566 999999999999987643
No 34
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.39 E-value=2.8e-12 Score=127.21 Aligned_cols=109 Identities=24% Similarity=0.312 Sum_probs=55.8
Q ss_pred CceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 477 (513)
.+++++.|+|++|++++..+..|.++++|+.|+|++|++++.++. +..+++|+.|+|++|+++...+..+..+++|++|
T Consensus 98 ~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177 (290)
T ss_dssp TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEE
Confidence 344555555555555543344455555555555555555544443 3455555555555555552222234445555555
Q ss_pred EcccCcCCCcCCCCcC-CCCcCEEECCCCCCC
Q 010316 478 FLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 478 ~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~ 508 (513)
+|++|+++ .+|..+. +..|+.|++++|++.
T Consensus 178 ~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 55555555 4555554 555555555555543
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.38 E-value=1.7e-12 Score=141.33 Aligned_cols=119 Identities=18% Similarity=0.090 Sum_probs=99.2
Q ss_pred EEecCCCCc--------eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcc
Q 010316 392 GITCTYDRR--------IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSG 462 (513)
Q Consensus 392 gv~c~~~~l--------~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g 462 (513)
.+.|...++ +.++.|+|++|+|++..+..|.++++|++|+|++|+|++..+. |..+++|++|+|++|+|++
T Consensus 35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence 467865442 3689999999999966667899999999999999999988775 7899999999999999996
Q ss_pred cCCccccCCCCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCC
Q 010316 463 EIPSSLGKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSP 510 (513)
Q Consensus 463 ~lP~~l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~ 510 (513)
..|..|.++++|++|+|++|++++..+..+. +++|+.|++++|++++.
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~ 163 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 163 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC
Confidence 5556789999999999999999854445577 89999999999988764
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.36 E-value=4.3e-12 Score=124.94 Aligned_cols=115 Identities=25% Similarity=0.271 Sum_probs=76.0
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCc-ccccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCcc
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNN-LSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLR 475 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~ 475 (513)
..+++|+.|+|++|.+++..|..+.++++|+.|++++|. +....| .+..+++|+.|+|++|++++..|..+..+++|+
T Consensus 53 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 53 RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC
Confidence 345566677777777765556667777777777777775 554444 356677777777777777766566677777777
Q ss_pred EEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 476 ELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 476 ~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
+|+|++|++++..+..+. +++|+.|++++|+++++++
T Consensus 133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred EEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 777777777743334455 7777777777777766554
No 37
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.36 E-value=2.5e-12 Score=119.75 Aligned_cols=106 Identities=25% Similarity=0.368 Sum_probs=94.3
Q ss_pred EEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcccCc
Q 010316 404 VTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNN 483 (513)
Q Consensus 404 ~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~ 483 (513)
+.+++++++++ .+|..+. +.|+.|+|++|.++.....+..+++|+.|+|++|++++..|..|..+++|++|+|++|+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 57899999998 7887654 68999999999998554468999999999999999997777889999999999999999
Q ss_pred CCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 484 LTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 484 l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
|++..|..+. +++|+.|+|++|+|+.+++
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~ 119 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPE 119 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeCh
Confidence 9966666787 9999999999999998876
No 38
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=2e-12 Score=132.23 Aligned_cols=113 Identities=24% Similarity=0.257 Sum_probs=100.2
Q ss_pred CceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 477 (513)
.+++|+.|+|++|.|++..+..|.++++|+.|+|++|+|....+. +..+++|+.|+|++|++++..|..+..+++|++|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 457899999999999977777899999999999999999987775 7899999999999999998888899999999999
Q ss_pred EcccCcCCCcCCCCc----C-CCCcCEEECCCCCCCCCCC
Q 010316 478 FLQNNNLTGQIPSSL----I-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 478 ~L~~N~l~g~lp~~l----~-l~~L~~L~l~~N~l~~~pp 512 (513)
+|++|+|+ .+|..+ . +++|+.|+|++|+|+.+++
T Consensus 142 ~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 142 YLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp ECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred ECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence 99999999 667654 4 8999999999999998764
No 39
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.35 E-value=5.6e-12 Score=123.34 Aligned_cols=113 Identities=24% Similarity=0.284 Sum_probs=90.8
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccE
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRE 476 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 476 (513)
..+++|+.|+|++|.+++..+..+..+++|+.|+|++|.+.+..+. +..+++|+.|+|++|++++..+..+..+++|++
T Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185 (270)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence 4567888899999988877677788889999999999988876665 688889999999999988666667888889999
Q ss_pred EEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCC
Q 010316 477 LFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSP 510 (513)
Q Consensus 477 L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~ 510 (513)
|+|++|++++..+..+. +++|+.|++++|++..-
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred EECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 99999988843334455 88899999999887643
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.35 E-value=3.1e-12 Score=125.97 Aligned_cols=111 Identities=21% Similarity=0.247 Sum_probs=71.4
Q ss_pred CceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 477 (513)
.+++|+.|++++|.+++..+..+.++++|+.|+|++|++++..+. +..+++|+.|+|++|++++..|..+..+++|+.|
T Consensus 127 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence 445666677777766644444566667777777777766655553 5666677777777777766666666666777777
Q ss_pred EcccCcCCCcCCCCcC-CCCcCEEECCCCCCCC
Q 010316 478 FLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 478 ~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~ 509 (513)
+|++|++++..+..+. +++|+.|++++|++..
T Consensus 207 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred eCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 7777776643333455 6667777777776543
No 41
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.34 E-value=3.1e-12 Score=125.42 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=83.2
Q ss_pred CCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcc-cCCccccCCCCc
Q 010316 397 YDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSG-EIPSSLGKIQSL 474 (513)
Q Consensus 397 ~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g-~lP~~l~~l~~L 474 (513)
...+++|+.|+|++|.+++..+..+.++++|+.|++++|.+.+..+ .+..+++|+.|+|++|++++ .+|..+..+++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L 151 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC
Confidence 3455677778888887776666677777888888888887776655 36777788888888887775 357777777888
Q ss_pred cEEEcccCcCCCcCCCCcC-CCCcC----EEECCCCCCCCCCC
Q 010316 475 RELFLQNNNLTGQIPSSLI-KPGLN----LKTSPGNQLSSPPP 512 (513)
Q Consensus 475 ~~L~L~~N~l~g~lp~~l~-l~~L~----~L~l~~N~l~~~pp 512 (513)
++|+|++|++++..+..+. +.+|+ .|++++|+++++++
T Consensus 152 ~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~ 194 (276)
T 2z62_A 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (276)
T ss_dssp CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCc
Confidence 8888888887754445555 55555 77788887776654
No 42
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.32 E-value=3.6e-12 Score=133.72 Aligned_cols=116 Identities=21% Similarity=0.157 Sum_probs=95.9
Q ss_pred CCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCcc
Q 010316 397 YDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLR 475 (513)
Q Consensus 397 ~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~ 475 (513)
...+++|+.|+|++|.+++..|..+.++++|+.|+|++|.+.+..|. +..+++|+.|+|++|++++..|..+..+++|+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 34567888899999998877788888889999999999988877664 68888999999999999888888888899999
Q ss_pred EEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 476 ELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 476 ~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
+|+|++|++++..+..+. +++|+.|++++|++++..|
T Consensus 375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999843334455 8899999999999887765
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.31 E-value=3.3e-12 Score=138.95 Aligned_cols=123 Identities=16% Similarity=0.202 Sum_probs=100.2
Q ss_pred eeEEec-CCCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCcc
Q 010316 390 WTGITC-TYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSS 467 (513)
Q Consensus 390 w~gv~c-~~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~ 467 (513)
..++.. ...++++|+.|+|++|.|++..+..|.+|++|++|+|++|++++.++. |.++++|+.|+|++|++++..+..
T Consensus 64 i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~ 143 (635)
T 4g8a_A 64 LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP 143 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCC
T ss_pred CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhh
Confidence 334443 345667899999999999866666789999999999999999887765 788999999999999998666667
Q ss_pred ccCCCCccEEEcccCcCCC-cCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 468 LGKIQSLRELFLQNNNLTG-QIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 468 l~~l~~L~~L~L~~N~l~g-~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
|+++++|++|+|++|++++ .+|..+. ++.|+.|++++|+|++++|
T Consensus 144 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 8999999999999999874 4566777 8999999999999887654
No 44
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.31 E-value=1.4e-12 Score=145.68 Aligned_cols=111 Identities=23% Similarity=0.402 Sum_probs=101.6
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCccE
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRE 476 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 476 (513)
..+..|+.|+|++|.+. .+|..+.++++|+.|+|++|.|+ .+| .++.+++|+.|+|++|+|+ .+|..++.|++|++
T Consensus 221 ~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKY 297 (727)
T ss_dssp -CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSE
T ss_pred ccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCE
Confidence 44578999999999998 89999999999999999999999 555 5899999999999999999 89999999999999
Q ss_pred EEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 477 LFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 477 L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
|+|++|.|+ .+|..+. +++|+.|+|++|+|++.+|
T Consensus 298 L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 298 FYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp EECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred EECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCCh
Confidence 999999998 8999988 9999999999999998765
No 45
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.31 E-value=8.4e-12 Score=122.25 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=79.3
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccE
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRE 476 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 476 (513)
..+++++.|++++|.+++..+..+.++++|+.|+|++|.+.+..+. +..+++|+.|++++|++++..+..+..+++|++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 128 (276)
T 2z62_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (276)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCE
Confidence 4455677777777777655555667777777777777777666553 566777777777777777555556777777777
Q ss_pred EEcccCcCCC-cCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 477 LFLQNNNLTG-QIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 477 L~L~~N~l~g-~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
|+|++|++++ .+|..+. +++|+.|++++|+++++++
T Consensus 129 L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred EECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 7777777764 3566666 7777777777777776543
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.31 E-value=5.6e-12 Score=137.29 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=72.9
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcc-cCCccccCCCCcc
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSG-EIPSSLGKIQSLR 475 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g-~lP~~l~~l~~L~ 475 (513)
..+++|+.|+|++|.+++..|..|.++++|++|+|++|.+.+..+ .++.+++|+.|+|++|++++ .+|..++++++|+
T Consensus 77 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 156 (606)
T 3vq2_A 77 HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156 (606)
T ss_dssp TTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCC
T ss_pred hchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCC
Confidence 445666666777666665556666666677777777776665554 35666667777777766654 4566666666777
Q ss_pred EEEcccCcCCCcCCCCcC-CCCc----CEEECCCCCCCCCCC
Q 010316 476 ELFLQNNNLTGQIPSSLI-KPGL----NLKTSPGNQLSSPPP 512 (513)
Q Consensus 476 ~L~L~~N~l~g~lp~~l~-l~~L----~~L~l~~N~l~~~pp 512 (513)
+|+|++|++++..|..+. +.+| ..|++++|+++++++
T Consensus 157 ~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~ 198 (606)
T 3vq2_A 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198 (606)
T ss_dssp EEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECT
T ss_pred EEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCc
Confidence 777777766655555554 3333 366677766665554
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.31 E-value=5.3e-12 Score=125.53 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=94.7
Q ss_pred CCCceeEEEeeecCCcCCc-CCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCc
Q 010316 397 YDRRIRIVTLNLTNMGLSG-SLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSL 474 (513)
Q Consensus 397 ~~~l~~l~~L~Ls~n~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L 474 (513)
...+++++.|++++|.+.+ .+|..+..+++|+.|+|++|.+.+..|. +..+++|+.|+|++|++++..+..+..+++|
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 225 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 225 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTC
T ss_pred cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccC
Confidence 3456788899999998886 5788888899999999999999887664 7888899999999999986666678888999
Q ss_pred cEEEcccCcCCCcCCCCcC-C-CCcCEEECCCCCCCCC
Q 010316 475 RELFLQNNNLTGQIPSSLI-K-PGLNLKTSPGNQLSSP 510 (513)
Q Consensus 475 ~~L~L~~N~l~g~lp~~l~-l-~~L~~L~l~~N~l~~~ 510 (513)
++|+|++|++++..|..+. + ++|+.|++++|++++-
T Consensus 226 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 9999999999888888877 6 4899999999988653
No 48
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=2.8e-12 Score=139.03 Aligned_cols=107 Identities=28% Similarity=0.387 Sum_probs=94.0
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEccc
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQN 481 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~ 481 (513)
.++.|+|++|.|++ +|. ++.|++|+.|+|++|.|+..+..++.+++|+.|+|++|+|++ +| .++.+++|+.|+|++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 46789999999984 776 999999999999999999443458899999999999999995 77 899999999999999
Q ss_pred CcCCCcC-CCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 482 NNLTGQI-PSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 482 N~l~g~l-p~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
|+|++.. |..+. +++|+.|+|++|+|++.||
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 9999665 88888 9999999999999998876
No 49
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=1.8e-12 Score=117.32 Aligned_cols=110 Identities=22% Similarity=0.229 Sum_probs=100.5
Q ss_pred eeEEEeeecCCcCC-cCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEc
Q 010316 401 IRIVTLNLTNMGLS-GSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFL 479 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 479 (513)
++++.|++++|+++ +.+|..+..+++|+.|+|++|.+++. +.+..+++|+.|+|++|++++.+|..+..+++|++|+|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 57899999999998 88999999999999999999999977 77899999999999999999878888888999999999
Q ss_pred ccCcCCCcCC--CCcC-CCCcCEEECCCCCCCCCCC
Q 010316 480 QNNNLTGQIP--SSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 480 ~~N~l~g~lp--~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
++|+++ .+| ..+. +++|+.|++++|++++.++
T Consensus 103 s~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 103 SGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp BSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred cCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 999999 444 6777 9999999999999998875
No 50
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.30 E-value=1e-11 Score=123.06 Aligned_cols=120 Identities=29% Similarity=0.290 Sum_probs=104.3
Q ss_pred eeEEecCCCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccc
Q 010316 390 WTGITCTYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSL 468 (513)
Q Consensus 390 w~gv~c~~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l 468 (513)
..++... ..+++++.|+|++|.++ .+|..+..+++|+.|+|++|++++..+. +..+++|+.|+|++|++++..+..+
T Consensus 67 l~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 144 (290)
T 1p9a_G 67 LTKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144 (290)
T ss_dssp CCEEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cCcccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhc
Confidence 3344433 45678999999999998 8899999999999999999999988775 7999999999999999996666678
Q ss_pred cCCCCccEEEcccCcCCCcCCCCc-C-CCCcCEEECCCCCCCCCCC
Q 010316 469 GKIQSLRELFLQNNNLTGQIPSSL-I-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 469 ~~l~~L~~L~L~~N~l~g~lp~~l-~-l~~L~~L~l~~N~l~~~pp 512 (513)
..+++|+.|+|++|+++ .+|... . +++|+.|++++|+|+.+|+
T Consensus 145 ~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~ip~ 189 (290)
T 1p9a_G 145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPK 189 (290)
T ss_dssp TTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCCccCh
Confidence 89999999999999999 666554 5 9999999999999998875
No 51
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.30 E-value=1.7e-11 Score=111.98 Aligned_cols=108 Identities=24% Similarity=0.286 Sum_probs=93.2
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEEEcc
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 480 (513)
..+.+++++++++ .+|..+ .++|+.|++++|++.+..+. +..+++|+.|+|++|++++..+..+..+++|++|+|+
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 4567899999998 677654 37999999999999987775 6899999999999999996666678999999999999
Q ss_pred cCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 481 NNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 481 ~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
+|++++..+..+. +++|+.|++++|+|+++++
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 117 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD 117 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCH
Confidence 9999955555566 9999999999999998876
No 52
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=4.5e-12 Score=115.88 Aligned_cols=106 Identities=20% Similarity=0.242 Sum_probs=65.2
Q ss_pred eEEEeeecCCcCCcCCChhhhcCc-CCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcc
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLT-ALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~-~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 480 (513)
+++.|++++|+++ .+|. +..+. +|+.|+|++|.+++. +.+..+++|+.|+|++|++++..|..+..+++|++|+|+
T Consensus 20 ~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 20 RDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp SCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred CceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 5666677776666 4443 34433 667777777766654 556666667777777776663322333666667777777
Q ss_pred cCcCCCcCCC--CcC-CCCcCEEECCCCCCCCCC
Q 010316 481 NNNLTGQIPS--SLI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 481 ~N~l~g~lp~--~l~-l~~L~~L~l~~N~l~~~p 511 (513)
+|+++ .+|. .+. +++|+.|++++|+++..+
T Consensus 97 ~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~ 129 (176)
T 1a9n_A 97 NNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKK 129 (176)
T ss_dssp SCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred CCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcH
Confidence 77665 5554 455 666777777776665544
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.28 E-value=6.6e-12 Score=124.83 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=99.8
Q ss_pred CCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccc-cCC-CCCCCCCCCEEEccCccCcccCCccccCCCCc
Q 010316 397 YDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSG-TIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSL 474 (513)
Q Consensus 397 ~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L 474 (513)
...+++++.|++++|.+.+..+..+.++++|+.|++++|.+.+ .+| .+..+++|+.|+|++|++++..|..+..+++|
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 201 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence 3456789999999999998888889999999999999999987 445 47889999999999999998888899999999
Q ss_pred cEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 475 RELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 475 ~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
++|+|++|++++..+..+. +++|+.|++++|++++.+|
T Consensus 202 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 9999999999855455666 8999999999999988765
No 54
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.28 E-value=6.1e-12 Score=133.04 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=55.6
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEEEcc
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 480 (513)
+++.|+|++|++++..+..|.++++|+.|+|++|.+++..|. +..+++|+.|+|++|++++..+..+..+++|++|+|+
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 445555555555544455555555555555555555554442 4555555555555555553322334555555555555
Q ss_pred cCcCCCcCCCCcC-CCCcCEEECCCCCCCC
Q 010316 481 NNNLTGQIPSSLI-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 481 ~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~ 509 (513)
+|++++..|..+. +++|+.|++++|++++
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 142 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVY 142 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCE
T ss_pred CCccccCChhHccccccCCEEECCCCccce
Confidence 5555544444444 4555555555554443
No 55
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.28 E-value=1.2e-12 Score=143.97 Aligned_cols=123 Identities=18% Similarity=0.249 Sum_probs=103.7
Q ss_pred CceeEEecCCCCceeEEEeeecCCcCCcC-----------------CChhhh--cCcCCCEEEccCCcccccCCC-CCCC
Q 010316 388 YSWTGITCTYDRRIRIVTLNLTNMGLSGS-----------------LPSNIS--RLTALSGIWLGNNNLSGTIPD-LSSL 447 (513)
Q Consensus 388 ~~w~gv~c~~~~l~~l~~L~Ls~n~l~g~-----------------ip~~l~--~l~~L~~L~Ls~N~l~g~~p~-l~~l 447 (513)
+...+++-....+++|+.|+|++|.++|. +|+.++ ++++|+.|+|++|.+.+.+|. ++.+
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 36777776667778899999999999985 899888 999999999999999888885 7889
Q ss_pred CCCCEEEccCcc-Ccc-cCCccccCC------CCccEEEcccCcCCCcCCC--CcC-CCCcCEEECCCCCCCCCC
Q 010316 448 MRLETLHLEDNQ-FSG-EIPSSLGKI------QSLRELFLQNNNLTGQIPS--SLI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 448 ~~L~~L~Ls~N~-l~g-~lP~~l~~l------~~L~~L~L~~N~l~g~lp~--~l~-l~~L~~L~l~~N~l~~~p 511 (513)
++|+.|+|++|+ ++| .+|..++.+ ++|++|+|++|+++ .+|. .+. +++|+.|++++|+++|..
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch
Confidence 999999999998 888 788887776 88888888888888 8888 777 888888888888887433
No 56
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.27 E-value=9.1e-12 Score=135.60 Aligned_cols=120 Identities=21% Similarity=0.136 Sum_probs=95.0
Q ss_pred eEEecCCCCc--------eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCc
Q 010316 391 TGITCTYDRR--------IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFS 461 (513)
Q Consensus 391 ~gv~c~~~~l--------~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~ 461 (513)
..+.|...++ ..++.|+|++|.+++..|..|.++++|++|+|++|.+.+..|. +..+++|+.|+|++|+++
T Consensus 15 ~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 94 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94 (606)
T ss_dssp TEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS
T ss_pred ceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc
Confidence 3466754332 3578888888888877777888888888888888888887774 788888888888888888
Q ss_pred ccCCccccCCCCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCC
Q 010316 462 GEIPSSLGKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSP 510 (513)
Q Consensus 462 g~lP~~l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~ 510 (513)
+..|..++.+++|++|+|++|++++..|..+. +++|+.|++++|+++++
T Consensus 95 ~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~ 144 (606)
T 3t6q_A 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144 (606)
T ss_dssp EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC
T ss_pred ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCccccc
Confidence 77788888888888888888888854466667 88888888888888775
No 57
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.27 E-value=3.6e-12 Score=137.04 Aligned_cols=105 Identities=22% Similarity=0.196 Sum_probs=72.3
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEEEcc
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 480 (513)
+++.|+|++|.+++..|..+.++++|++|+|++|++.+..|. +..+++|++|+|++|++++..|..++.+++|++|+|+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 567777777777766666777777777777777777766653 6677777777777777775555557777777777777
Q ss_pred cCcCCC-cCCCCcC-CCCcCEEECCCCC
Q 010316 481 NNNLTG-QIPSSLI-KPGLNLKTSPGNQ 506 (513)
Q Consensus 481 ~N~l~g-~lp~~l~-l~~L~~L~l~~N~ 506 (513)
+|++++ .+|..+. +++|+.|++++|+
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred CCcccccchhhhhhccCCccEEECCCCc
Confidence 777764 3455555 6667777766665
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.27 E-value=1.9e-11 Score=132.99 Aligned_cols=113 Identities=18% Similarity=0.206 Sum_probs=56.0
Q ss_pred ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEEE
Q 010316 400 RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELF 478 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 478 (513)
+++++.|+|++|.+++..|..|.++++|++|+|++|.+.+..|. ++.+++|++|+|++|++++..|..++++++|++|+
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 34444455555544444444444555555555555555444332 44455555555555555433334455555555555
Q ss_pred cccCcCCC-cCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 479 LQNNNLTG-QIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 479 L~~N~l~g-~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
|++|++++ .+|..+. +++|++|++++|++++.+|
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 55555543 3455555 5555555555555554443
No 59
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.26 E-value=5.7e-12 Score=117.36 Aligned_cols=109 Identities=18% Similarity=0.228 Sum_probs=94.7
Q ss_pred CceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCccEE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 477 (513)
.+++++.|++++|.++ . ++.+..+++|+.|++++|.+++..+ .+..+++|+.|+|++|++++..|..+..+++|++|
T Consensus 64 ~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 64 YAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp GCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred cCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence 4568999999999775 3 3478999999999999999998544 58899999999999999998888999999999999
Q ss_pred EcccCc-CCCcCCCCcC-CCCcCEEECCCCCCCCCC
Q 010316 478 FLQNNN-LTGQIPSSLI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 478 ~L~~N~-l~g~lp~~l~-l~~L~~L~l~~N~l~~~p 511 (513)
+|++|+ ++ .+| .+. +++|+.|++++|+++.++
T Consensus 142 ~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 142 DLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp ECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT
T ss_pred EccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH
Confidence 999998 55 777 566 999999999999998865
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.24 E-value=2.2e-11 Score=134.48 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=81.2
Q ss_pred ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEEE
Q 010316 400 RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELF 478 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 478 (513)
+++++.|+|++|.+++..|..+.++++|+.|+|++|.+++.++. ++.+++|++|+|++|++++..|..++.+++|++|+
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 45667777777777766666777777777777777777765553 67777777777777777755556777777777777
Q ss_pred cccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 479 LQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 479 L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
|++|++++..|..+. +++|+.|++++|++++.++
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 777777766666666 7777777777777776553
No 61
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.24 E-value=1.4e-11 Score=114.73 Aligned_cols=110 Identities=16% Similarity=0.216 Sum_probs=93.0
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCccE
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRE 476 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 476 (513)
..+++++.|++++|.+++..+..+..+++|+.|++++|.+++..+ .+..+++|+.|+|++|.+.+.+| .+..+++|++
T Consensus 85 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~ 163 (197)
T 4ezg_A 85 SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKS 163 (197)
T ss_dssp TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCE
T ss_pred hcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCE
Confidence 346789999999999998888899999999999999999998666 47899999999999998333676 6899999999
Q ss_pred EEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCC
Q 010316 477 LFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSP 510 (513)
Q Consensus 477 L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~ 510 (513)
|+|++|+++ .++ .+. +++|+.|++++|+|.+.
T Consensus 164 L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N~i~~~ 196 (197)
T 4ezg_A 164 LNIQFDGVH-DYR-GIEDFPKLNQLYAFSQTIGGK 196 (197)
T ss_dssp EECTTBCCC-CCT-TGGGCSSCCEEEECBC-----
T ss_pred EECCCCCCc-ChH-HhccCCCCCEEEeeCcccCCc
Confidence 999999999 566 566 99999999999998753
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.23 E-value=7.4e-11 Score=123.64 Aligned_cols=110 Identities=25% Similarity=0.288 Sum_probs=95.3
Q ss_pred CCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCcc
Q 010316 397 YDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLR 475 (513)
Q Consensus 397 ~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~ 475 (513)
..++++|+.|+|++|+++ .+|. +..+++|+.|+|++|.+++..|. +..+++|+.|+|++|++++..|..+..+++|+
T Consensus 181 ~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLV 258 (440)
T ss_dssp TTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCC
T ss_pred hhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCC
Confidence 345678999999999998 6664 88899999999999999988774 78999999999999999988888999999999
Q ss_pred EEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCC
Q 010316 476 ELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 476 ~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~ 508 (513)
+|+|++|++++..+..+. +++|+.|+|++|++.
T Consensus 259 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 259 EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 999999999944445556 999999999999874
No 63
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.23 E-value=1.5e-11 Score=117.89 Aligned_cols=84 Identities=19% Similarity=0.237 Sum_probs=46.8
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCc-ccccCC-CCCCCCCCCEEEccC-ccCcccCCccccCCCCccEEE
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNN-LSGTIP-DLSSLMRLETLHLED-NQFSGEIPSSLGKIQSLRELF 478 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~~p-~l~~l~~L~~L~Ls~-N~l~g~lP~~l~~l~~L~~L~ 478 (513)
+++.|++++|++++..+..+.++++|+.|++++|. ++...+ .+..+++|+.|+|++ |++++..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45566666666664444455566666666666664 554444 245555666666665 555544344555555555555
Q ss_pred cccCcCC
Q 010316 479 LQNNNLT 485 (513)
Q Consensus 479 L~~N~l~ 485 (513)
|++|+++
T Consensus 112 l~~n~l~ 118 (239)
T 2xwt_C 112 IFNTGLK 118 (239)
T ss_dssp EEEECCC
T ss_pred CCCCCCc
Confidence 5555555
No 64
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.23 E-value=1.7e-11 Score=129.62 Aligned_cols=116 Identities=19% Similarity=0.198 Sum_probs=76.1
Q ss_pred CCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCcc
Q 010316 397 YDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLR 475 (513)
Q Consensus 397 ~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~ 475 (513)
...+++|+.|+|++|.+++..+..|.++++|+.|+|++|.+.+..+. +..+++|+.|+|++|++++..|..+..+++|+
T Consensus 76 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 76 FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155 (477)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCC
Confidence 34456677777777777644344566677777777777777666553 56677777777777777766666677777777
Q ss_pred EEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 476 ELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 476 ~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
+|+|++|++++..+..+. +++|+.|++++|.+.++++
T Consensus 156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp EEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred EEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 777777777633333455 7777777777777665543
No 65
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=140.03 Aligned_cols=115 Identities=18% Similarity=0.121 Sum_probs=67.8
Q ss_pred CCceeEEEeeecCCcCCcCC-ChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCcc--ccCCCC
Q 010316 398 DRRIRIVTLNLTNMGLSGSL-PSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSS--LGKIQS 473 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~--l~~l~~ 473 (513)
..+++|+.|+|++|.+.+.+ |..|.++++|+.|+|++|.+.+..|. +..+++|+.|+|++|.+++.+|.. +..+++
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence 34455566666666444444 44566666666666666666665553 566666666666666666555543 666666
Q ss_pred ccEEEcccCcCCCcCC-CCcC-CCCcCEEECCCCCCCCCCC
Q 010316 474 LRELFLQNNNLTGQIP-SSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 474 L~~L~L~~N~l~g~lp-~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
|++|+|++|++++..+ ..+. +++|+.|++++|.+++..|
T Consensus 125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 6666666666664433 2444 6666666666666655443
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.22 E-value=3.2e-11 Score=126.86 Aligned_cols=97 Identities=25% Similarity=0.321 Sum_probs=75.3
Q ss_pred ceeEEecCCCCc--------eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCcc
Q 010316 389 SWTGITCTYDRR--------IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQ 459 (513)
Q Consensus 389 ~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~ 459 (513)
.|..+.|...++ ++++.|+|++|++++..+..|.++++|+.|+|++|.+++..+. +..+++|+.|+|++|+
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 356777765442 3678888888888877778888888888888888888877664 6788888888888888
Q ss_pred CcccCCccccCCCCccEEEcccCcCC
Q 010316 460 FSGEIPSSLGKIQSLRELFLQNNNLT 485 (513)
Q Consensus 460 l~g~lP~~l~~l~~L~~L~L~~N~l~ 485 (513)
+++..+..+..+++|++|+|++|+++
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred CCccChhhhcccCCCCEEECCCCCcc
Confidence 88555556777888888888888877
No 67
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=2.7e-11 Score=122.63 Aligned_cols=100 Identities=21% Similarity=0.214 Sum_probs=86.8
Q ss_pred eecCC-cCCcCCChhhhcCcCCCEEEccC-CcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEEEcccCc
Q 010316 407 NLTNM-GLSGSLPSNISRLTALSGIWLGN-NNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNN 483 (513)
Q Consensus 407 ~Ls~n-~l~g~ip~~l~~l~~L~~L~Ls~-N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~ 483 (513)
+++++ +|+ .+|. |..+++|+.|+|++ |.|.+.++. |..+++|+.|+|++|+|++..|..|..|++|+.|+|++|+
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44555 777 6888 99999999999996 999988874 8999999999999999999888899999999999999999
Q ss_pred CCCcCCCCcC-CCCcCEEECCCCCCCC
Q 010316 484 LTGQIPSSLI-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 484 l~g~lp~~l~-l~~L~~L~l~~N~l~~ 509 (513)
|+ .+|.... ...|+.|+|.+|+|..
T Consensus 92 l~-~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LE-SLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CS-CCCSTTTCSCCCCEEECCSSCCCC
T ss_pred cc-eeCHHHcccCCceEEEeeCCCccC
Confidence 99 5665544 4449999999999874
No 68
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=3.6e-12 Score=144.35 Aligned_cols=122 Identities=21% Similarity=0.278 Sum_probs=85.4
Q ss_pred CceeEEecCCCCceeEEEeeecCCcCCc-----------------CCChhhh--cCcCCCEEEccCCcccccCCC-CCCC
Q 010316 388 YSWTGITCTYDRRIRIVTLNLTNMGLSG-----------------SLPSNIS--RLTALSGIWLGNNNLSGTIPD-LSSL 447 (513)
Q Consensus 388 ~~w~gv~c~~~~l~~l~~L~Ls~n~l~g-----------------~ip~~l~--~l~~L~~L~Ls~N~l~g~~p~-l~~l 447 (513)
+...+++.....+++|+.|+|++|.++| .+|+.++ +|++|+.|+|++|.+.+.+|. ++.+
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 3566666666667778888888888887 2777776 888888888888887777774 6777
Q ss_pred CCCCEEEccCcc-Ccc-cCCccccCCC-------CccEEEcccCcCCCcCCC--CcC-CCCcCEEECCCCCCCCC
Q 010316 448 MRLETLHLEDNQ-FSG-EIPSSLGKIQ-------SLRELFLQNNNLTGQIPS--SLI-KPGLNLKTSPGNQLSSP 510 (513)
Q Consensus 448 ~~L~~L~Ls~N~-l~g-~lP~~l~~l~-------~L~~L~L~~N~l~g~lp~--~l~-l~~L~~L~l~~N~l~~~ 510 (513)
++|+.|+|++|+ ++| .+|..++.++ +|++|+|++|+++ .+|. .+. +++|+.|++++|+++.+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~l 588 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHL 588 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccc
Confidence 777777777776 776 6666554443 6666666666666 6666 555 66666666666666533
No 69
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.21 E-value=2.6e-11 Score=110.45 Aligned_cols=100 Identities=26% Similarity=0.319 Sum_probs=87.7
Q ss_pred CceeEEecCCCCc--------eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCc
Q 010316 388 YSWTGITCTYDRR--------IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDN 458 (513)
Q Consensus 388 ~~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N 458 (513)
|.|+.+.|+...+ .+++.|+|++|.|++..|..|.++++|+.|+|++|+|++..+. +..+++|+.|+|++|
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 5788888865432 4688999999999988888999999999999999999988776 689999999999999
Q ss_pred cCcccCCccccCCCCccEEEcccCcCCCc
Q 010316 459 QFSGEIPSSLGKIQSLRELFLQNNNLTGQ 487 (513)
Q Consensus 459 ~l~g~lP~~l~~l~~L~~L~L~~N~l~g~ 487 (513)
+|++..|..+..+++|++|+|++|++...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99966666799999999999999999843
No 70
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.21 E-value=1.2e-11 Score=125.67 Aligned_cols=109 Identities=23% Similarity=0.210 Sum_probs=82.1
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEEEcc
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 480 (513)
+++.|++++|++++..+..+.++++|+.|+|++|.+++..+. +..+++|+.|+|++|++++..+..+..+++|++|+|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 678888888888865555788888888888888888877664 7788888888888888884333347788888888888
Q ss_pred cCcCCCcCCC--CcC-CCCcCEEECCCC-CCCCCC
Q 010316 481 NNNLTGQIPS--SLI-KPGLNLKTSPGN-QLSSPP 511 (513)
Q Consensus 481 ~N~l~g~lp~--~l~-l~~L~~L~l~~N-~l~~~p 511 (513)
+|+++ .+|. .+. +++|+.|++++| .+..++
T Consensus 133 ~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 133 GNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp TCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CCCCc-ccCchhhhccCCCCcEEECCCCccccccC
Confidence 88887 5665 455 788888888887 355544
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.21 E-value=4.6e-11 Score=130.27 Aligned_cols=109 Identities=19% Similarity=0.232 Sum_probs=65.5
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEEEcc
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 480 (513)
+|+.|+|++|.+++..|..|..+++|+.|+|++|.+.+.+|. ++.+++|+.|+|++|.+++..+..+..+++|++|+|+
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 455666666666655555666666666666666666665554 4566666666666666663333334666666666666
Q ss_pred cCcCCCcCCCCcC-CCCcCEEECCCCCCCCC
Q 010316 481 NNNLTGQIPSSLI-KPGLNLKTSPGNQLSSP 510 (513)
Q Consensus 481 ~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~ 510 (513)
+|++++..|..+. +++|+.|++++|.++++
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred CCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 6666655555555 66666666666666554
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.21 E-value=4e-12 Score=127.20 Aligned_cols=114 Identities=23% Similarity=0.216 Sum_probs=92.9
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcC-----cCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCccc--CCccc-
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRL-----TALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGE--IPSSL- 468 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l-----~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~--lP~~l- 468 (513)
..+++++.|+|++|.+++. |..+..+ ++|++|+|++|++.+..| .++.+++|+.|+|++|++.+. +|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 4567899999999999966 8888877 899999999999988876 478999999999999998765 34444
Q ss_pred -cCCCCccEEEcccCcCCC--cCCCCc-C-CCCcCEEECCCCCCCCCCC
Q 010316 469 -GKIQSLRELFLQNNNLTG--QIPSSL-I-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 469 -~~l~~L~~L~L~~N~l~g--~lp~~l-~-l~~L~~L~l~~N~l~~~pp 512 (513)
..+++|++|+|++|++++ .++..+ . +++|+.|++++|++++.+|
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 788999999999999983 333333 2 7899999999999988664
No 73
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.20 E-value=2.6e-11 Score=130.64 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=95.5
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCccc-ccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCcc
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLS-GTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLR 475 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~-g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~ 475 (513)
..+++++.|++++|.+.+..|..+.++++|+.|++++|.+. +.+| .+..+++|+.|+|++|++++..|..+..+++|+
T Consensus 418 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 44667888888888888888888888888999999998887 4566 478888999999999999887788888889999
Q ss_pred EEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 476 ELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 476 ~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
+|+|++|++++..|..+. +++|+.|++++|++++..|
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 999999998866666676 8889999999998887655
No 74
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.20 E-value=3.7e-11 Score=131.04 Aligned_cols=118 Identities=22% Similarity=0.219 Sum_probs=100.0
Q ss_pred ceeEEec-CCCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCc
Q 010316 389 SWTGITC-TYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPS 466 (513)
Q Consensus 389 ~w~gv~c-~~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~ 466 (513)
...++.. ....+++|+.|+|++|.+++..|..|+++++|+.|+|++|.+++.++. ++.+++|+.|+|++|.+++..|.
T Consensus 86 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 165 (597)
T 3oja_B 86 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 165 (597)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh
Confidence 3455554 456678999999999999988888899999999999999999977776 58999999999999999988888
Q ss_pred cccCCCCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCC
Q 010316 467 SLGKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 467 ~l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~ 509 (513)
.+..+++|++|+|++|++++ ++ +. +++|+.|++++|.+++
T Consensus 166 ~~~~l~~L~~L~L~~N~l~~-~~--~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 166 TFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp TTTTCTTCCEEECTTSCCSB-CC--GGGCTTCSEEECCSSCCSE
T ss_pred hhhcCCcCcEEECcCCCCCC-cC--hhhhhhhhhhhcccCcccc
Confidence 99999999999999999984 33 44 7777777777777664
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.20 E-value=3.7e-11 Score=129.47 Aligned_cols=125 Identities=18% Similarity=0.225 Sum_probs=109.6
Q ss_pred ceeEEecCCCCceeEEEeeecCCcCCcCCC-hhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCc-ccCC
Q 010316 389 SWTGITCTYDRRIRIVTLNLTNMGLSGSLP-SNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFS-GEIP 465 (513)
Q Consensus 389 ~w~gv~c~~~~l~~l~~L~Ls~n~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~-g~lP 465 (513)
...++......+++++.|++++|.+.+..+ ..+.++++|+.|++++|.+.+.+|. +..+++|+.|+|++|+++ +.+|
T Consensus 384 ~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p 463 (570)
T 2z63_A 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463 (570)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred ccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccch
Confidence 344444334456789999999999997666 4789999999999999999988885 789999999999999998 6899
Q ss_pred ccccCCCCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCCC
Q 010316 466 SSLGKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPPS 513 (513)
Q Consensus 466 ~~l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp~ 513 (513)
..+..+++|++|+|++|++++..|..+. +++|+.|++++|++++++|.
T Consensus 464 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 9999999999999999999977788988 99999999999999998863
No 76
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.19 E-value=5.9e-11 Score=119.49 Aligned_cols=118 Identities=25% Similarity=0.334 Sum_probs=92.4
Q ss_pred CCceeEEecCCCC--------ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccC
Q 010316 387 GYSWTGITCTYDR--------RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLED 457 (513)
Q Consensus 387 ~~~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~ 457 (513)
.|.|..+.|.... .++++.|++++|.+++..|..+.++++|+.|+|++|.+++..|. +..+++|+.|+|++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 3578888886533 23688899999999877777899999999999999999888664 78889999999999
Q ss_pred ccCcccCCccccCCCCccEEEcccCcCCCcCCC-CcC-CCCcCEEECCCCCCC
Q 010316 458 NQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPS-SLI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 458 N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~-~l~-l~~L~~L~l~~N~l~ 508 (513)
|+++ .+|..+. ++|++|+|++|+++ .+|. .+. +++|+.|++++|+++
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccc
Confidence 9888 6776654 67888888888887 4444 455 788888888888774
No 77
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.19 E-value=4.4e-11 Score=132.06 Aligned_cols=114 Identities=23% Similarity=0.242 Sum_probs=100.3
Q ss_pred CceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 477 (513)
.+++|+.|+|++|.+++..+..|.++++|++|+|++|.+.+..|. ++.+++|+.|+|++|++++..|..+..+++|++|
T Consensus 71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 356899999999999954444799999999999999999987764 8999999999999999998889999999999999
Q ss_pred EcccCcCCCcCCCCcC---CCCcCEEECCCCCCCCCCC
Q 010316 478 FLQNNNLTGQIPSSLI---KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 478 ~L~~N~l~g~lp~~l~---l~~L~~L~l~~N~l~~~pp 512 (513)
+|++|++++..+..+. +++|+.|++++|++++.+|
T Consensus 151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp ECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred EccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence 9999999966565543 6899999999999998876
No 78
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.19 E-value=6.6e-11 Score=121.80 Aligned_cols=117 Identities=22% Similarity=0.221 Sum_probs=94.0
Q ss_pred eeEEec-CCCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCcc
Q 010316 390 WTGITC-TYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSS 467 (513)
Q Consensus 390 w~gv~c-~~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~ 467 (513)
..++.. ....+++|+.|+|++|.+++..|..+.++++|+.|+|++|.+...++. +..+++|+.|+|++|++++..|..
T Consensus 81 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 160 (390)
T 3o6n_A 81 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160 (390)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhh
Confidence 444543 345678899999999999977777889999999999999999866665 588999999999999999777888
Q ss_pred ccCCCCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCC
Q 010316 468 LGKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 468 l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~ 509 (513)
+..+++|++|+|++|++++ ++ +. +++|+.|++++|.+++
T Consensus 161 ~~~l~~L~~L~l~~n~l~~-~~--~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 161 FQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp TSSCTTCCEEECCSSCCSB-CC--GGGCTTCSEEECCSSCCSE
T ss_pred ccCCCCCCEEECCCCcCCc-cc--cccccccceeecccccccc
Confidence 9999999999999999984 33 34 6677777777766654
No 79
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.19 E-value=6.8e-12 Score=111.19 Aligned_cols=109 Identities=23% Similarity=0.287 Sum_probs=92.1
Q ss_pred EecCCCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCccc-CCccccC
Q 010316 393 ITCTYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGE-IPSSLGK 470 (513)
Q Consensus 393 v~c~~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~-lP~~l~~ 470 (513)
++.....+++++.|++++|.+++. ..+..+++|+.|++++|.+++.+|. +..+++|+.|++++|++++. .|..+..
T Consensus 34 ~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~ 111 (149)
T 2je0_A 34 LEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKK 111 (149)
T ss_dssp CCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGG
T ss_pred HHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhh
Confidence 333345567899999999999955 7799999999999999999987776 46699999999999999963 4478999
Q ss_pred CCCccEEEcccCcCCCcCCC----CcC-CCCcCEEECCC
Q 010316 471 IQSLRELFLQNNNLTGQIPS----SLI-KPGLNLKTSPG 504 (513)
Q Consensus 471 l~~L~~L~L~~N~l~g~lp~----~l~-l~~L~~L~l~~ 504 (513)
+++|++|++++|+++ .+|. .+. +++|+.|++++
T Consensus 112 l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 112 LENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCCC
Confidence 999999999999999 4554 566 99999999864
No 80
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.18 E-value=5.7e-11 Score=119.42 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=91.9
Q ss_pred eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCccEEEc
Q 010316 401 IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFL 479 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 479 (513)
++++.|++++|.+++..+..+.++++|+.|+|++|.+.+..+ .+..+++|+.|+|++|+++ .+|..+..+++|++|+|
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEEC
Confidence 578899999999998888889999999999999999998877 4788999999999999998 88999999999999999
Q ss_pred ccCcCCCcCCCCcC-------CCCcCEEECCCCCCCC
Q 010316 480 QNNNLTGQIPSSLI-------KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 480 ~~N~l~g~lp~~l~-------l~~L~~L~l~~N~l~~ 509 (513)
++|++++.-+..+. ...|+.|++++|++..
T Consensus 271 ~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 99999844344443 3678899999998863
No 81
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.18 E-value=7.9e-11 Score=123.84 Aligned_cols=110 Identities=22% Similarity=0.250 Sum_probs=91.4
Q ss_pred CCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCcc
Q 010316 397 YDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLR 475 (513)
Q Consensus 397 ~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~ 475 (513)
..++++|+.|+|++|+++ .+| .+..+++|+.|+|++|.+++..|. +..+++|+.|+|++|++++..|..+..+++|+
T Consensus 192 ~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp TTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 345678899999999998 455 478889999999999999888774 78889999999999999988888889999999
Q ss_pred EEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCC
Q 010316 476 ELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 476 ~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~ 508 (513)
.|+|++|++++..+..+. +++|+.|++++|++.
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 999999999844444555 889999999999865
No 82
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.18 E-value=2.2e-11 Score=123.66 Aligned_cols=123 Identities=19% Similarity=0.101 Sum_probs=100.0
Q ss_pred ceeEEec-CCCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCC--CCCCCCCCCEEEccCc-cCcccC
Q 010316 389 SWTGITC-TYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP--DLSSLMRLETLHLEDN-QFSGEI 464 (513)
Q Consensus 389 ~w~gv~c-~~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p--~l~~l~~L~~L~Ls~N-~l~g~l 464 (513)
...++.. ....+++++.|+|++|.+++..+..+.++++|+.|+|++|.+....+ .+..+++|+.|++++| .++...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 87 GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC
Confidence 3445543 34567889999999999984444448899999999999999986655 3788999999999998 467566
Q ss_pred CccccCCCCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCC
Q 010316 465 PSSLGKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 465 P~~l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~p 511 (513)
|..+..+++|++|++++|++++..|..+. +++|+.|++++|++..++
T Consensus 167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch
Confidence 77899999999999999999977788888 999999999999886543
No 83
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.17 E-value=8e-11 Score=121.16 Aligned_cols=107 Identities=21% Similarity=0.298 Sum_probs=55.2
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCcc-ccCCCCccEEEc
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSS-LGKIQSLRELFL 479 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~-l~~l~~L~~L~L 479 (513)
+|+.|+|++|.+++..+..+..+++|+.|+|++|.+.+.+|. ++.+++|+.|+|++|+++ .+|.. +..+++|++|+|
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEEC
Confidence 445555555555544444555555555555555555554443 455555555555555555 33332 355555555555
Q ss_pred ccCcCCCcCCCCcC-CCCcCEEECCCCCCCC
Q 010316 480 QNNNLTGQIPSSLI-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 480 ~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~ 509 (513)
++|++++..|..+. +++|+.|++++|++++
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 179 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTH 179 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence 55555533344444 5555555555555544
No 84
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.16 E-value=6.4e-11 Score=128.03 Aligned_cols=106 Identities=21% Similarity=0.192 Sum_probs=92.8
Q ss_pred eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEEEc
Q 010316 401 IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFL 479 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 479 (513)
++++.|+|++|.+++..+..+.++++|+.|+|++|++++..|+ +..+++|++|+|++|+++ .+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 4789999999999977778899999999999999999988775 789999999999999998 78876 7899999999
Q ss_pred ccCcCCC-cCCCCcC-CCCcCEEECCCCCCCC
Q 010316 480 QNNNLTG-QIPSSLI-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 480 ~~N~l~g-~lp~~l~-l~~L~~L~l~~N~l~~ 509 (513)
++|++++ .+|..+. +++|+.|++++|++++
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 9999985 3457788 9999999999998875
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.16 E-value=3e-11 Score=128.57 Aligned_cols=106 Identities=20% Similarity=0.208 Sum_probs=72.8
Q ss_pred ceeEEEeeecCCcCCcCCChhhh-cCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEE
Q 010316 400 RIRIVTLNLTNMGLSGSLPSNIS-RLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELF 478 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 478 (513)
+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.+++. +....+++|+.|+|++|.+++ +|..+..+++|+.|+
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~ 220 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEE
T ss_pred CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEE
Confidence 45677777777777766666665 567777777777777655 334457777777777777774 444577777777777
Q ss_pred cccCcCCCcCCCCcC-CCCcCEEECCCCCCC
Q 010316 479 LQNNNLTGQIPSSLI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 479 L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~ 508 (513)
|++|+|+ .+|..+. +++|+.|++++|++.
T Consensus 221 Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred ecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 7777777 4666666 777777777777765
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.16 E-value=2.7e-11 Score=121.06 Aligned_cols=113 Identities=22% Similarity=0.239 Sum_probs=90.9
Q ss_pred CCCceeEEEeeecCCcCCcC--CChhh--hcCcCCCEEEccCCccccc--CC-C-CCCCCCCCEEEccCccCcccCC-cc
Q 010316 397 YDRRIRIVTLNLTNMGLSGS--LPSNI--SRLTALSGIWLGNNNLSGT--IP-D-LSSLMRLETLHLEDNQFSGEIP-SS 467 (513)
Q Consensus 397 ~~~l~~l~~L~Ls~n~l~g~--ip~~l--~~l~~L~~L~Ls~N~l~g~--~p-~-l~~l~~L~~L~Ls~N~l~g~lP-~~ 467 (513)
...+++++.|+|++|.+.|. ++..+ .++++|+.|+|++|++++. ++ . +..+++|+.|+|++|++++..| ..
T Consensus 169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 34577899999999998765 34455 7889999999999998842 22 2 3577899999999999997775 45
Q ss_pred ccCCCCccEEEcccCcCCCcCCCCcCCCCcCEEECCCCCCCCCC
Q 010316 468 LGKIQSLRELFLQNNNLTGQIPSSLIKPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 468 l~~l~~L~~L~L~~N~l~g~lp~~l~l~~L~~L~l~~N~l~~~p 511 (513)
+..+++|++|+|++|+|+ .+|..+. ++|+.|++++|+|++.|
T Consensus 249 ~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~~L~Ls~N~l~~~p 290 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLK-QVPKGLP-AKLSVLDLSYNRLDRNP 290 (312)
T ss_dssp CCCCTTCCEEECTTSCCS-SCCSSCC-SEEEEEECCSSCCCSCC
T ss_pred hhhcCCCCEEECCCCccC-hhhhhcc-CCceEEECCCCCCCCCh
Confidence 667889999999999998 8888777 88999999999998874
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.16 E-value=4.2e-11 Score=114.75 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=90.5
Q ss_pred CCceeEEEeeecC-CcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCC---EEEccCc-cCcccCCccccCCC
Q 010316 398 DRRIRIVTLNLTN-MGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLE---TLHLEDN-QFSGEIPSSLGKIQ 472 (513)
Q Consensus 398 ~~l~~l~~L~Ls~-n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~---~L~Ls~N-~l~g~lP~~l~~l~ 472 (513)
..+++++.|++++ |.+++..+..+.++++|+.|++++|.+++ +|.+..+++|+ .|++++| ++++..+..+..++
T Consensus 77 ~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~ 155 (239)
T 2xwt_C 77 YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155 (239)
T ss_dssp ESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred CCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccccccccccccccEEECCCCcchhhcCcccccchh
Confidence 4456788888888 88886556678888889999999988886 55577777777 8999988 88865556688888
Q ss_pred Ccc-EEEcccCcCCCcCCCCcC-CCCcCEEECCCCC-CCCCCC
Q 010316 473 SLR-ELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQ-LSSPPP 512 (513)
Q Consensus 473 ~L~-~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~-l~~~pp 512 (513)
+|+ +|+|++|+++ .+|.... .++|+.|++++|+ ++++++
T Consensus 156 ~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~ 197 (239)
T 2xwt_C 156 NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDK 197 (239)
T ss_dssp SSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECT
T ss_pred cceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCH
Confidence 999 9999999888 7777666 7788999999994 877665
No 88
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.16 E-value=5.9e-11 Score=129.17 Aligned_cols=115 Identities=22% Similarity=0.136 Sum_probs=68.4
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCccE
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRE 476 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 476 (513)
..+++|+.|+|++|.+++..|..+.++++|+.|++++|.+++..+ .++.+++|+.|+|++|++++..+..+..+++|++
T Consensus 78 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 157 (606)
T 3t6q_A 78 QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157 (606)
T ss_dssp TTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCE
T ss_pred cCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCE
Confidence 445566666666666665556666666666666666666665433 3566666666666666666422222333666666
Q ss_pred EEcccCcCCCcCCCCcC-CCCcC--EEECCCCCCCCCCC
Q 010316 477 LFLQNNNLTGQIPSSLI-KPGLN--LKTSPGNQLSSPPP 512 (513)
Q Consensus 477 L~L~~N~l~g~lp~~l~-l~~L~--~L~l~~N~l~~~pp 512 (513)
|+|++|++++..|..+. +++|+ .|++++|++++.+|
T Consensus 158 L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp EECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECT
T ss_pred EEcccCcccccChhhhhhhcccceeEEecCCCccCccCh
Confidence 66666666644444455 66666 66666666665554
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.15 E-value=2e-11 Score=121.81 Aligned_cols=112 Identities=20% Similarity=0.253 Sum_probs=85.1
Q ss_pred CCceeEEEeeecCCcCCcC--C--ChhhhcCcCCCEEEccCCcccccCCC----CCCCCCCCEEEccCccCcccCCcccc
Q 010316 398 DRRIRIVTLNLTNMGLSGS--L--PSNISRLTALSGIWLGNNNLSGTIPD----LSSLMRLETLHLEDNQFSGEIPSSLG 469 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~--i--p~~l~~l~~L~~L~Ls~N~l~g~~p~----l~~l~~L~~L~Ls~N~l~g~lP~~l~ 469 (513)
..+++|+.|+|++|++.+. + +..+..+++|+.|+|++|+++...+. +..+++|+.|+|++|++++..|..+.
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP 245 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence 4567788888888887642 2 22346788888888888888633221 35678899999999999877787777
Q ss_pred CC---CCccEEEcccCcCCCcCCCCcCCCCcCEEECCCCCCCCCC
Q 010316 470 KI---QSLRELFLQNNNLTGQIPSSLIKPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 470 ~l---~~L~~L~L~~N~l~g~lp~~l~l~~L~~L~l~~N~l~~~p 511 (513)
.+ ++|++|+|++|+|+ .+|..+. ++|+.|++++|+|+++|
T Consensus 246 ~~~~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l~~~~ 288 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRLNRAP 288 (310)
T ss_dssp SCCCCTTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCCCSCC
T ss_pred hccCcCcCCEEECCCCCCC-chhhhhc-CCCCEEECCCCcCCCCc
Confidence 76 58999999999998 7787665 78899999999988864
No 90
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.15 E-value=2.7e-11 Score=130.11 Aligned_cols=113 Identities=20% Similarity=0.154 Sum_probs=76.7
Q ss_pred CCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCccccc-CC-CCCCCCCCCEEEccCccCcccCC-ccccCCCC
Q 010316 397 YDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGT-IP-DLSSLMRLETLHLEDNQFSGEIP-SSLGKIQS 473 (513)
Q Consensus 397 ~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-~p-~l~~l~~L~~L~Ls~N~l~g~lP-~~l~~l~~ 473 (513)
...+++|+.|+|++|.+++..|..++++++|++|+|++|.+.+. +| .++.+++|+.|+|++|++.+.+| ..+..+++
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 149 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc
Confidence 34556677777777777755555577777777777777777642 22 46677777777777777444554 46777777
Q ss_pred ccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCC
Q 010316 474 LRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 474 L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~ 509 (513)
|++|+|++|++++.+|..+. +++|+.|+++.|.+..
T Consensus 150 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 186 (549)
T 2z81_A 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186 (549)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT
T ss_pred cCeeeccCCcccccChhhhhccccCceEecccCcccc
Confidence 77777777777766777777 7777777777776543
No 91
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.15 E-value=1.6e-10 Score=121.00 Aligned_cols=114 Identities=25% Similarity=0.323 Sum_probs=88.6
Q ss_pred CCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCC-ccccCCCCc
Q 010316 397 YDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIP-SSLGKIQSL 474 (513)
Q Consensus 397 ~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP-~~l~~l~~L 474 (513)
..++++|+.|+|++|.+++..+..+..+++|+.|+|++|.+....+. +..+++|+.|+|++|+..+.+| ..+..+++|
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187 (440)
T ss_dssp GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence 34567888888888888855555788888888888888888876663 6788888888888854433444 468888899
Q ss_pred cEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 475 RELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 475 ~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
++|+|++|+++ .+|. +. +++|+.|+|++|+|++++|
T Consensus 188 ~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~ 224 (440)
T 3zyj_A 188 RYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRP 224 (440)
T ss_dssp CEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECT
T ss_pred CeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccCh
Confidence 99999999988 7775 44 8899999999999887765
No 92
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.14 E-value=6.4e-11 Score=126.50 Aligned_cols=107 Identities=22% Similarity=0.286 Sum_probs=72.4
Q ss_pred CceeEEEeeecCCcCCcCCChh-hhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSN-ISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRE 476 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 476 (513)
.+++++.|++++|.+.+.+|.. +..+++|+.|++++|.+++.+|. +. ++|+.|+|++|+++ .+|..+..+++|++
T Consensus 372 ~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~ 448 (520)
T 2z7x_B 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQE 448 (520)
T ss_dssp TCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred hCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCE
Confidence 3456666777777766545553 56666777777777776655543 22 56777777777777 67776777777777
Q ss_pred EEcccCcCCCcCCCC-cC-CCCcCEEECCCCCCCC
Q 010316 477 LFLQNNNLTGQIPSS-LI-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 477 L~L~~N~l~g~lp~~-l~-l~~L~~L~l~~N~l~~ 509 (513)
|+|++|+++ .+|.. +. +++|+.|++++|++++
T Consensus 449 L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 449 LNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 777777777 56665 55 7777777777777765
No 93
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.14 E-value=3.1e-11 Score=128.98 Aligned_cols=104 Identities=20% Similarity=0.179 Sum_probs=57.5
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcc
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 480 (513)
+++.|+|++|.+++..|..+.++++|++|+|++|++++..| .+..+++|++|+|++|+++ .+|.. .+++|++|+|+
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECC
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEecc
Confidence 45555555555554444555555555556665555555544 2455555555555555555 44444 45555555555
Q ss_pred cCcCCC-cCCCCcC-CCCcCEEECCCCCCC
Q 010316 481 NNNLTG-QIPSSLI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 481 ~N~l~g-~lp~~l~-l~~L~~L~l~~N~l~ 508 (513)
+|++++ .+|..+. +++|+.|++++|+++
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred CCccccccchhhhccCCcceEEEecCcccc
Confidence 555554 3445555 555555555555543
No 94
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.13 E-value=1e-10 Score=126.45 Aligned_cols=107 Identities=21% Similarity=0.293 Sum_probs=58.9
Q ss_pred CceeEEEeeecCCcCCcCCChh-hhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSN-ISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRE 476 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 476 (513)
.+++++.|++++|.+++.+|.. +..+++|+.|++++|++++.+|. +. ++|+.|+|++|+++ .+|..+..+++|++
T Consensus 401 ~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~ 477 (562)
T 3a79_B 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQE 477 (562)
T ss_dssp TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSE
T ss_pred CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCE
Confidence 3445555555555555434432 44555555555555555544442 11 45666666666665 55555556666666
Q ss_pred EEcccCcCCCcCCCC-cC-CCCcCEEECCCCCCCC
Q 010316 477 LFLQNNNLTGQIPSS-LI-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 477 L~L~~N~l~g~lp~~-l~-l~~L~~L~l~~N~l~~ 509 (513)
|+|++|+++ .+|.. +. +++|+.|++++|++.+
T Consensus 478 L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 478 LNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp EECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred EECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 666666666 45554 44 6666666666666554
No 95
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.13 E-value=1.5e-10 Score=116.53 Aligned_cols=113 Identities=24% Similarity=0.409 Sum_probs=99.7
Q ss_pred cCCCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcccCCccccCCCC
Q 010316 395 CTYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQS 473 (513)
Q Consensus 395 c~~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~ 473 (513)
|.....++++.+++++++++ .+|..+. ++|+.|+|++|.+.+..| .+..+++|+.|+|++|++++..|..+..+++
T Consensus 27 cp~~c~c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 103 (332)
T 2ft3_A 27 CPFGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRK 103 (332)
T ss_dssp CCSSCEEETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTT
T ss_pred CCCCCcccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCC
Confidence 43344457889999999998 8887664 789999999999998877 4899999999999999999888999999999
Q ss_pred ccEEEcccCcCCCcCCCCcCCCCcCEEECCCCCCCCCCC
Q 010316 474 LRELFLQNNNLTGQIPSSLIKPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 474 L~~L~L~~N~l~g~lp~~l~l~~L~~L~l~~N~l~~~pp 512 (513)
|++|+|++|+++ .+|..+. ++|+.|++++|+++++++
T Consensus 104 L~~L~L~~n~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~ 140 (332)
T 2ft3_A 104 LQKLYISKNHLV-EIPPNLP-SSLVELRIHDNRIRKVPK 140 (332)
T ss_dssp CCEEECCSSCCC-SCCSSCC-TTCCEEECCSSCCCCCCS
T ss_pred CCEEECCCCcCC-ccCcccc-ccCCEEECCCCccCccCH
Confidence 999999999999 8887766 899999999999998875
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.13 E-value=1e-10 Score=116.88 Aligned_cols=109 Identities=26% Similarity=0.394 Sum_probs=91.0
Q ss_pred CCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccE
Q 010316 397 YDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRE 476 (513)
Q Consensus 397 ~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 476 (513)
...+++|+.|++++|.+++ ++. +..+++|+.|++++|.+++..+ +..+++|+.|+|++|++++ ++. +..+++|++
T Consensus 103 ~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~ 177 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTT 177 (308)
T ss_dssp GTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCE
T ss_pred hcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCE
Confidence 3456789999999999984 554 8999999999999999986544 8889999999999999984 544 889999999
Q ss_pred EEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 477 LFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 477 L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
|+|++|+++ .++. +. +++|+.|++++|++++.+|
T Consensus 178 L~l~~n~l~-~~~~-l~~l~~L~~L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 178 LKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP 212 (308)
T ss_dssp EECCSSCCC-CCGG-GGGCTTCCEEECTTSCCCBCGG
T ss_pred EECCCCccC-cChh-hcCCCCCCEEEccCCccCcccc
Confidence 999999998 4444 56 9999999999999987753
No 97
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=7.4e-11 Score=127.88 Aligned_cols=104 Identities=22% Similarity=0.277 Sum_probs=92.4
Q ss_pred CCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccC-CccccCCCCcc
Q 010316 397 YDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEI-PSSLGKIQSLR 475 (513)
Q Consensus 397 ~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~l-P~~l~~l~~L~ 475 (513)
...+++|+.|+|++|.|+ .+|..+++|++|+.|+|++|.+++ +|.++.+++|+.|+|++|++++.. |..++.+++|+
T Consensus 459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC
Confidence 455778999999999999 999999999999999999999998 568999999999999999999776 99999999999
Q ss_pred EEEcccCcCCCcCCCCc---C-CCCcCEEEC
Q 010316 476 ELFLQNNNLTGQIPSSL---I-KPGLNLKTS 502 (513)
Q Consensus 476 ~L~L~~N~l~g~lp~~l---~-l~~L~~L~l 502 (513)
.|+|++|+|++..|... . +++|+.|++
T Consensus 537 ~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 537 LLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999995544321 2 789999875
No 98
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=2.3e-11 Score=111.16 Aligned_cols=102 Identities=19% Similarity=0.260 Sum_probs=91.7
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCC-CCCCCCCEEEccCccCcccCCc--cccCCCCccEEE
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDL-SSLMRLETLHLEDNQFSGEIPS--SLGKIQSLRELF 478 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l-~~l~~L~~L~Ls~N~l~g~lP~--~l~~l~~L~~L~ 478 (513)
+++.|++++|.+++. +.+..+++|+.|+|++|.+++.++.+ ..+++|+.|+|++|+++ .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 799999999999954 67999999999999999999877665 88999999999999996 6776 889999999999
Q ss_pred cccCcCCCcCCCC----cC-CCCcCEEECCCCCC
Q 010316 479 LQNNNLTGQIPSS----LI-KPGLNLKTSPGNQL 507 (513)
Q Consensus 479 L~~N~l~g~lp~~----l~-l~~L~~L~l~~N~l 507 (513)
|++|+++ .+|.. +. +++|+.|++++|.+
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 9999998 77875 66 99999999999865
No 99
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.12 E-value=8.7e-11 Score=133.30 Aligned_cols=116 Identities=22% Similarity=0.194 Sum_probs=101.6
Q ss_pred CCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC---CCCCCCCCEEEccCccCcccCC-ccccCCC
Q 010316 397 YDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD---LSSLMRLETLHLEDNQFSGEIP-SSLGKIQ 472 (513)
Q Consensus 397 ~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~---l~~l~~L~~L~Ls~N~l~g~lP-~~l~~l~ 472 (513)
...+++|+.|+|++|.+++..|..|.++++|+.|+|++|.+.+.+|. +..+++|+.|+|++|++++..| ..+++++
T Consensus 69 f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~ 148 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148 (844)
T ss_dssp TSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred hcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC
Confidence 45678899999999999988899999999999999999999986653 7899999999999999987654 5789999
Q ss_pred CccEEEcccCcCCCcCCCCcC-C--CCcCEEECCCCCCCCCCC
Q 010316 473 SLRELFLQNNNLTGQIPSSLI-K--PGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 473 ~L~~L~L~~N~l~g~lp~~l~-l--~~L~~L~l~~N~l~~~pp 512 (513)
+|++|+|++|++++..|..+. + ++|+.|++++|.+.+..|
T Consensus 149 ~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 149 SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191 (844)
T ss_dssp SCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCC
T ss_pred CCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccc
Confidence 999999999999988888887 6 899999999999887654
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.12 E-value=1.1e-10 Score=115.72 Aligned_cols=107 Identities=29% Similarity=0.517 Sum_probs=79.3
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEE
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 477 (513)
..+++++.|++++|.+++ + +.+..+++|+.|++++|++++. +.+..+++|+.|+|++|++++..| +..+++|++|
T Consensus 109 ~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 183 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183 (291)
T ss_dssp TTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred ccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence 345678888888888874 3 4577788888888888888765 567778888888888888875433 7778888888
Q ss_pred EcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCC
Q 010316 478 FLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 478 ~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~p 511 (513)
+|++|+++ .+|. +. +++|+.|++++|+++..+
T Consensus 184 ~L~~N~i~-~l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 184 YLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ECCSSCCC-BCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred ECCCCcCC-CChh-hccCCCCCEEECcCCcccCCc
Confidence 88888887 4554 55 888888888888776543
No 101
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.11 E-value=2.3e-10 Score=115.02 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=45.7
Q ss_pred eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcc
Q 010316 401 IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 480 (513)
++|+.|+|++|.+++..|..+.++++|+.|+|++|.++.....+. ++|+.|++++|++++..+..+..+++|++|+|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECC
Confidence 344444444444443334444444444444444444442221211 334444444444443333334444444444444
Q ss_pred cCcCC--CcCCCCcC-CCCcCEEECCCCCCCCC
Q 010316 481 NNNLT--GQIPSSLI-KPGLNLKTSPGNQLSSP 510 (513)
Q Consensus 481 ~N~l~--g~lp~~l~-l~~L~~L~l~~N~l~~~ 510 (513)
+|++. +..+..+. +++|+.|++++|.++.+
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 44443 12333333 44444444444444433
No 102
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.11 E-value=1.2e-10 Score=116.71 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=94.2
Q ss_pred CceeEEEeeecCCcCCcCCChhhh-cCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNIS-RLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 477 (513)
.+++++.|+|++|.+++..+..+. .+++|+.|+|++|.+++. +....+++|+.|+|++|+++ .+|..+..+++|++|
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L 219 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI 219 (317)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEE
T ss_pred ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCC-cchhhhcccCcccEE
Confidence 456899999999999977777664 789999999999999876 55556999999999999999 566679999999999
Q ss_pred EcccCcCCCcCCCCcC-CCCcCEEECCCCCCC
Q 010316 478 FLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 478 ~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~ 508 (513)
+|++|+++ .+|..+. +++|+.|++++|++.
T Consensus 220 ~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred ECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 99999999 7898888 999999999999987
No 103
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=1.8e-10 Score=105.36 Aligned_cols=102 Identities=22% Similarity=0.297 Sum_probs=85.9
Q ss_pred CceeEEecCCCC--------ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCc
Q 010316 388 YSWTGITCTYDR--------RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDN 458 (513)
Q Consensus 388 ~~w~gv~c~~~~--------l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N 458 (513)
|....+.|+... ..+++.|+|++|.|++..|..|.++++|+.|+|++|+|++.++. +..+++|+.|+|++|
T Consensus 12 C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 12 CDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp ECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 344566775433 24689999999999988888999999999999999999987776 589999999999999
Q ss_pred cCcccCCccccCCCCccEEEcccCcCCCcCCC
Q 010316 459 QFSGEIPSSLGKIQSLRELFLQNNNLTGQIPS 490 (513)
Q Consensus 459 ~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~ 490 (513)
+|++..+..+..+++|++|+|++|++. ..+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~-c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD-CECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC-TTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc-cccc
Confidence 999555556999999999999999998 4443
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.10 E-value=1.7e-10 Score=114.30 Aligned_cols=108 Identities=22% Similarity=0.258 Sum_probs=88.3
Q ss_pred CCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccE
Q 010316 397 YDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRE 476 (513)
Q Consensus 397 ~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 476 (513)
...+++|+.|++++|.+++ ++ .+..+++|+.|+|++|.+.+. +.+..+++|+.|+|++|++++. ..+..+++|++
T Consensus 86 l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 160 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT 160 (291)
T ss_dssp GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCE
Confidence 3456788899999999874 44 488899999999999998864 6678889999999999999854 57888999999
Q ss_pred EEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCC
Q 010316 477 LFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 477 L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~p 511 (513)
|+|++|++++. +. +. +++|+.|++++|+|++++
T Consensus 161 L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 161 LSLEDNQISDI-VP-LAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp EECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCBCG
T ss_pred EEccCCccccc-hh-hcCCCccCEEECCCCcCCCCh
Confidence 99999999854 43 66 999999999999988764
No 105
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.10 E-value=1.6e-10 Score=115.37 Aligned_cols=166 Identities=24% Similarity=0.352 Sum_probs=116.7
Q ss_pred EEEecCCCCCCCCCccceeeeeeeeeccCcccchhhHHHHHHHHhcCCCCCCCCCCCCCCCCCceeEEecCCCCceeEEE
Q 010316 326 NITLNPAPGSNKGPLINGGEIFQVLELGGRTLTRDVIALETLRNSLQNPPLDWSGDPCLPHGYSWTGITCTYDRRIRIVT 405 (513)
Q Consensus 326 ~l~l~~~~~s~l~p~ln~~ei~~~~~l~~~t~~~d~~aL~~l~~~~~~~~~~w~g~pC~~~~~~w~gv~c~~~~l~~l~~ 405 (513)
.+.+..+....+++ +..+.-++.+++..+.... ..++..+.. .. ...-.. +...++.. ...+++|+.
T Consensus 67 ~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~----L~-~L~l~~-----n~l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 67 GLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VSAIAGLQS----IK-TLDLTS-----TQITDVTP-LAGLSNLQV 133 (308)
T ss_dssp EEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CGGGTTCTT----CC-EEECTT-----SCCCCCGG-GTTCTTCCE
T ss_pred EEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-chhhcCCCC----CC-EEECCC-----CCCCCchh-hcCCCCCCE
Confidence 45555555555555 6666677777775543322 211111110 00 000011 12333332 455678999
Q ss_pred eeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcccCcCC
Q 010316 406 LNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLT 485 (513)
Q Consensus 406 L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~ 485 (513)
|++++|.+++ ++. +..+++|+.|+|++|.+++..+ +..+++|+.|+|++|++++ +|. +..+++|++|+|++|+++
T Consensus 134 L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 134 LYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp EECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCC
T ss_pred EECCCCccCc-Ccc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccC
Confidence 9999999984 444 8999999999999999997555 8899999999999999984 443 889999999999999999
Q ss_pred CcCCCCcC-CCCcCEEECCCCCCCCCC
Q 010316 486 GQIPSSLI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 486 g~lp~~l~-l~~L~~L~l~~N~l~~~p 511 (513)
+ ++. +. +++|+.|++++|++++.|
T Consensus 209 ~-~~~-l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 209 D-VSP-LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp B-CGG-GTTCTTCCEEEEEEEEEECCC
T ss_pred c-ccc-ccCCCCCCEEEccCCeeecCC
Confidence 4 443 66 999999999999998755
No 106
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.09 E-value=1.2e-10 Score=116.71 Aligned_cols=118 Identities=17% Similarity=0.104 Sum_probs=98.8
Q ss_pred eeEEecCCCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-C-CCCCCCCEEEccCccCcccCCcc
Q 010316 390 WTGITCTYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-L-SSLMRLETLHLEDNQFSGEIPSS 467 (513)
Q Consensus 390 w~gv~c~~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l-~~l~~L~~L~Ls~N~l~g~lP~~ 467 (513)
..++.+.. +++++.|++++|.+++..+..+..+++|+.|+|++|.+.+..+. + ..+++|+.|+|++|++++. |.
T Consensus 111 l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~- 186 (317)
T 3o53_A 111 ISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG- 186 (317)
T ss_dssp CSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-
T ss_pred cCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-
Confidence 44444432 46799999999999977777899999999999999999987664 4 5789999999999999854 43
Q ss_pred ccCCCCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 468 LGKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 468 l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
...+++|++|+|++|+++ .+|..+. +++|+.|++++|+|+.+|+
T Consensus 187 ~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~ 231 (317)
T 3o53_A 187 QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEK 231 (317)
T ss_dssp CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhh
Confidence 445899999999999999 6677777 9999999999999987764
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.09 E-value=2e-10 Score=112.07 Aligned_cols=105 Identities=25% Similarity=0.344 Sum_probs=88.9
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEE
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 477 (513)
..+++|+.|+|++|.++ .+++ +.++++|+.|+|++|++++ +|.+.. ++|+.|+|++|++++ +| .+..+++|++|
T Consensus 60 ~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~~-l~~~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L 133 (263)
T 1xeu_A 60 QFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKN-LNGIPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEIL 133 (263)
T ss_dssp GGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCSC-CTTCCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEE
T ss_pred hhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccCC-cCcccc-CcccEEEccCCccCC-Ch-hhcCcccccEE
Confidence 34578999999999998 4555 8999999999999999986 444444 899999999999985 44 58999999999
Q ss_pred EcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCC
Q 010316 478 FLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSP 510 (513)
Q Consensus 478 ~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~ 510 (513)
+|++|+++ .++ .+. +++|+.|++++|++++.
T Consensus 134 ~Ls~N~i~-~~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 134 SIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp ECTTSCCC-BCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred ECCCCcCC-CCh-HHccCCCCCEEECCCCcCcch
Confidence 99999999 455 566 99999999999999875
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.09 E-value=3.2e-10 Score=110.68 Aligned_cols=107 Identities=26% Similarity=0.373 Sum_probs=91.6
Q ss_pred CCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccE
Q 010316 397 YDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRE 476 (513)
Q Consensus 397 ~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~ 476 (513)
...+++|+.|+|++|++++ +|. +.. ++|+.|+|++|++++ ++.+..+++|+.|+|++|++++ +| .+..+++|++
T Consensus 81 l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~ 154 (263)
T 1xeu_A 81 LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEV 154 (263)
T ss_dssp GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCE
T ss_pred hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-ChhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCE
Confidence 4567899999999999984 555 333 899999999999987 4678899999999999999995 45 6889999999
Q ss_pred EEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCC
Q 010316 477 LFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 477 L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~p 511 (513)
|+|++|++++. ..+. +++|+.|++++|++++.|
T Consensus 155 L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 155 LDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp EECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred EECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 99999999954 5566 999999999999987764
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.08 E-value=2.6e-10 Score=124.44 Aligned_cols=107 Identities=29% Similarity=0.517 Sum_probs=92.7
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEE
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 477 (513)
..+++|+.|+|++|.+.+ + +.+..|++|+.|+|++|.+++. +.+..+++|+.|+|++|++++..| +..+++|+.|
T Consensus 106 ~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp TTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred ccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEE
Confidence 345789999999999984 4 4589999999999999999876 778899999999999999996655 8999999999
Q ss_pred EcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCC
Q 010316 478 FLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 478 ~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~p 511 (513)
+|++|+|+ .+| .+. +++|+.|+|++|++.+.|
T Consensus 181 ~Ls~N~i~-~l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 181 YLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ECCSSCCC-BCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred ECcCCCCC-CCh-HHccCCCCCEEEccCCcCcCCc
Confidence 99999999 454 466 999999999999987765
No 110
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.08 E-value=1.7e-10 Score=122.78 Aligned_cols=119 Identities=18% Similarity=0.117 Sum_probs=102.0
Q ss_pred ceeEEecCCCCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CC-CCCCCCEEEccCccCcccCCc
Q 010316 389 SWTGITCTYDRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LS-SLMRLETLHLEDNQFSGEIPS 466 (513)
Q Consensus 389 ~w~gv~c~~~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~-~l~~L~~L~Ls~N~l~g~lP~ 466 (513)
.+.++.|. .+++|+.|+|++|.+++..|..+.++++|+.|+|++|.+++.+|. +. .+++|+.|+|++|.+++. |.
T Consensus 110 ~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~ 186 (487)
T 3oja_A 110 NISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG 186 (487)
T ss_dssp CCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC
T ss_pred cCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc
Confidence 45566664 356899999999999988888999999999999999999997774 54 799999999999999965 33
Q ss_pred cccCCCCccEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 467 SLGKIQSLRELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 467 ~l~~l~~L~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
+..+++|+.|+|++|++++ +|..+. +++|+.|++++|+|+++|+
T Consensus 187 -~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~ 231 (487)
T 3oja_A 187 -QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEK 231 (487)
T ss_dssp -CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred -cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccch
Confidence 4468999999999999994 666677 9999999999999998765
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.07 E-value=1.6e-10 Score=126.05 Aligned_cols=106 Identities=25% Similarity=0.319 Sum_probs=90.0
Q ss_pred CceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELF 478 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 478 (513)
.+++|+.|+|++|.+.+ ++ .+..|++|+.|+|++|.+.+ ++.+..+++|+.|+|++|++++. ..+..+++|+.|+
T Consensus 85 ~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS 159 (605)
T ss_dssp GCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred cCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEE
Confidence 45678999999999984 44 68899999999999999986 46788899999999999999854 6788999999999
Q ss_pred cccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCC
Q 010316 479 LQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 479 L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~p 511 (513)
|++|+|++..| +. +++|+.|+|++|+|++++
T Consensus 160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 160 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR 191 (605)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG
T ss_pred CcCCcCCCchh--hccCCCCCEEECcCCCCCCCh
Confidence 99999996555 66 999999999999998764
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.06 E-value=1.6e-10 Score=129.02 Aligned_cols=95 Identities=21% Similarity=0.184 Sum_probs=82.6
Q ss_pred CCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcccCcCCCcCCCCcC-C
Q 010316 416 SLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPSSLI-K 494 (513)
Q Consensus 416 ~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~~l~-l 494 (513)
..+..+..++.|+.|+|++|.+....+.+..+++|+.|+|++|.|+ .+|..++.|++|++|+|++|+|+ .+|..+. +
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 4577789999999999999999955556789999999999999999 99999999999999999999999 8999999 9
Q ss_pred CCcCEEECCCCCCCCCCC
Q 010316 495 PGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 495 ~~L~~L~l~~N~l~~~pp 512 (513)
++|+.|+|++|.|+.+|+
T Consensus 293 ~~L~~L~L~~N~l~~lp~ 310 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTLPW 310 (727)
T ss_dssp TTCSEEECCSSCCCCCCS
T ss_pred CCCCEEECCCCCCCccCh
Confidence 999999999999998775
No 113
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.05 E-value=8.7e-11 Score=117.22 Aligned_cols=114 Identities=15% Similarity=0.128 Sum_probs=93.9
Q ss_pred CCceeEEEeeecCCcCCcCCC----hhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCccc--C--Cccc
Q 010316 398 DRRIRIVTLNLTNMGLSGSLP----SNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGE--I--PSSL 468 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip----~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~--l--P~~l 468 (513)
..+++++.|+|++|.+++..+ ..+..+++|+.|+|++|.+.+.++. ++.+++|+.|+|++|++.+. + +..+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 556789999999999997666 3456799999999999999888774 78999999999999998753 2 2334
Q ss_pred cCCCCccEEEcccCcCCCcCCCC----cC-CCCcCEEECCCCCCCCCCC
Q 010316 469 GKIQSLRELFLQNNNLTGQIPSS----LI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 469 ~~l~~L~~L~L~~N~l~g~lp~~----l~-l~~L~~L~l~~N~l~~~pp 512 (513)
..+++|++|+|++|+++ .++.. +. +++|+.|++++|+|++..|
T Consensus 194 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 194 HKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp TSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred hcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence 78899999999999997 44442 34 8999999999999998843
No 114
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.05 E-value=1.7e-10 Score=116.45 Aligned_cols=106 Identities=24% Similarity=0.364 Sum_probs=85.7
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEE
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 477 (513)
..+++++.|++++|.+++ + +.+..+++|+.|++++|.+++. +.+..+++|+.|+|++|++++..|..+..+++|++|
T Consensus 240 ~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp TTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred hcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 345678889999998884 4 4588889999999999988864 667888899999999999988888888889999999
Q ss_pred EcccCcCCCcCCCCcC-CCCcCEEECCCCCCC
Q 010316 478 FLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 478 ~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~ 508 (513)
+|++|++++..| +. +++|+.|++++|+|+
T Consensus 317 ~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 317 FLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999985544 55 889999999999876
No 115
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.00 E-value=3.8e-10 Score=113.91 Aligned_cols=109 Identities=27% Similarity=0.398 Sum_probs=96.1
Q ss_pred CceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELF 478 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 478 (513)
.+++++.|++++|.++ .++. +..+++|+.|++++|.+.. ++.+..+++|+.|++++|++++ + ..+..+++|+.|+
T Consensus 219 ~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLF 293 (347)
T ss_dssp GCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEE
T ss_pred cCCcCCEEEccCCccC-CCcc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEE
Confidence 4568999999999998 4555 8999999999999999986 4678899999999999999985 4 4588999999999
Q ss_pred cccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 479 LQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 479 L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
|++|++++..|..+. +++|+.|++++|++++.+|
T Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 999999977777777 9999999999999998875
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.98 E-value=1.4e-09 Score=117.64 Aligned_cols=97 Identities=27% Similarity=0.336 Sum_probs=78.6
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEccc
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQN 481 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~ 481 (513)
+|+.|+|++|.|++ +|. .+++|+.|+|++|.+++ +|. .+++|+.|+|++|++++ +|. +. ++|+.|+|++
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVST 189 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCS
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcC
Confidence 78889999999985 776 67889999999999987 454 57889999999999985 777 65 8899999999
Q ss_pred CcCCCcCCCCcCCCCc-------CEEECCCCCCCCCCC
Q 010316 482 NNLTGQIPSSLIKPGL-------NLKTSPGNQLSSPPP 512 (513)
Q Consensus 482 N~l~g~lp~~l~l~~L-------~~L~l~~N~l~~~pp 512 (513)
|+|+ .+|. +.- +| +.|+|++|+|+.+|+
T Consensus 190 N~L~-~lp~-~~~-~L~~~~~~L~~L~Ls~N~l~~lp~ 224 (571)
T 3cvr_A 190 NLLE-SLPA-VPV-RNHHSEETEIFFRCRENRITHIPE 224 (571)
T ss_dssp SCCS-SCCC-CC---------CCEEEECCSSCCCCCCG
T ss_pred CCCC-chhh-HHH-hhhcccccceEEecCCCcceecCH
Confidence 9998 7787 432 55 999999999988764
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.97 E-value=6.3e-10 Score=117.41 Aligned_cols=106 Identities=25% Similarity=0.306 Sum_probs=86.5
Q ss_pred CceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELF 478 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 478 (513)
.+++++.|++++|.+++. ++ +..+++|+.|+|++|++.+..| +..+++|+.|++++|++++. ..+..+++|+.|+
T Consensus 285 ~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 359 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLS 359 (466)
T ss_dssp TCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred CCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence 456788888888888853 33 7888889999999998887665 77888899999999988854 4688889999999
Q ss_pred cccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCC
Q 010316 479 LQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 479 L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~p 511 (513)
+++|++++..| +. +++|+.|++++|++++.|
T Consensus 360 l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp CCSSCCCBCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred CCCCccCccch--hhcCCCCCEEeccCCcccCCc
Confidence 99999987666 56 889999999999888765
No 118
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.97 E-value=9.6e-10 Score=111.18 Aligned_cols=97 Identities=24% Similarity=0.274 Sum_probs=82.7
Q ss_pred CceeEEecCCC----------CceeEEEeeecC-CcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEc
Q 010316 388 YSWTGITCTYD----------RRIRIVTLNLTN-MGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHL 455 (513)
Q Consensus 388 ~~w~gv~c~~~----------~l~~l~~L~Ls~-n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~L 455 (513)
|.|..+.|... .+.+|+.|+|++ |.|++..+..|.+|++|+.|+|++|+|++.+|. |..+++|+.|+|
T Consensus 8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 57788888765 235699999996 999977778899999999999999999999886 799999999999
Q ss_pred cCccCcccCCccccCCCCccEEEcccCcCC
Q 010316 456 EDNQFSGEIPSSLGKIQSLRELFLQNNNLT 485 (513)
Q Consensus 456 s~N~l~g~lP~~l~~l~~L~~L~L~~N~l~ 485 (513)
++|+|++..|..+..++ |+.|+|.+|+|.
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 99999954444555555 999999999987
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.96 E-value=5.1e-12 Score=117.82 Aligned_cols=107 Identities=23% Similarity=0.274 Sum_probs=90.1
Q ss_pred CceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 477 (513)
.+++++.|+|++|.+++ +| .+.++++|+.|++++|.+.. +|. +..+++|+.|+|++|++++ +| .+..+++|++|
T Consensus 46 ~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVL 120 (198)
T ss_dssp HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEE
T ss_pred cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEE
Confidence 35689999999999995 77 89999999999999999984 554 5667899999999999995 56 68889999999
Q ss_pred EcccCcCCCcCCC--CcC-CCCcCEEECCCCCCCCCC
Q 010316 478 FLQNNNLTGQIPS--SLI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 478 ~L~~N~l~g~lp~--~l~-l~~L~~L~l~~N~l~~~p 511 (513)
+|++|+++ .++. .+. +++|+.|++++|++++.+
T Consensus 121 ~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 121 YMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp EESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred ECCCCcCC-chhHHHHHhcCCCCCEEEecCCcccccc
Confidence 99999998 4443 566 999999999999886543
No 120
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.96 E-value=8.3e-10 Score=116.48 Aligned_cols=108 Identities=29% Similarity=0.405 Sum_probs=91.3
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEE
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLREL 477 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L 477 (513)
..+++++.|++++|.+++ +++ +..+++|+.|++++|++.+..+ +..+++|+.|+|++|++++..| +..+++|+.|
T Consensus 262 ~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp TTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred hcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 345688999999999984 444 8889999999999999987554 7889999999999999997655 7889999999
Q ss_pred EcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 478 FLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 478 ~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
++++|++++. + .+. +++|+.|++++|++++.+|
T Consensus 337 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 337 FFYNNKVSDV-S-SLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp ECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCBCGG
T ss_pred ECCCCccCCc-h-hhccCCCCCEEeCCCCccCccch
Confidence 9999999854 3 566 9999999999999988765
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.95 E-value=2.5e-09 Score=112.79 Aligned_cols=95 Identities=21% Similarity=0.211 Sum_probs=51.9
Q ss_pred ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEc
Q 010316 400 RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFL 479 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 479 (513)
+++++.|+|++|.+++ +| ++.+++|++|++++|.+++. + ++.+++|+.|+|++|++++ +| ++.+++|++|++
T Consensus 63 l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 63 LTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC 134 (457)
T ss_dssp CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence 3455555555555553 22 55555555555555555543 2 5555556666666665553 33 555555666666
Q ss_pred ccCcCCCcCCCCcC-CCCcCEEECCCC
Q 010316 480 QNNNLTGQIPSSLI-KPGLNLKTSPGN 505 (513)
Q Consensus 480 ~~N~l~g~lp~~l~-l~~L~~L~l~~N 505 (513)
++|++++ ++ +. +++|+.|++++|
T Consensus 135 ~~N~l~~-l~--l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 135 ARNTLTE-ID--VSHNTQLTELDCHLN 158 (457)
T ss_dssp TTSCCSC-CC--CTTCTTCCEEECTTC
T ss_pred CCCccce-ec--cccCCcCCEEECCCC
Confidence 6665553 32 44 555666666665
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.94 E-value=7.7e-10 Score=119.74 Aligned_cols=101 Identities=25% Similarity=0.269 Sum_probs=84.9
Q ss_pred ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCc-----
Q 010316 400 RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSL----- 474 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L----- 474 (513)
+++|+.|+|++|.|++ +|. .+++|+.|+|++|++++ +|.+. ++|+.|+|++|+|+ .+|. +.. +|
T Consensus 139 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~ 207 (571)
T 3cvr_A 139 PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPELP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEE 207 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCS-SCCC-CC----------
T ss_pred CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cchhh--CCCCEEECcCCCCC-chhh-HHH--hhhcccc
Confidence 4678999999999995 776 67899999999999998 55555 89999999999999 8887 654 77
Q ss_pred --cEEEcccCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 475 --RELFLQNNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 475 --~~L~L~~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
+.|+|++|+|+ .+|..+. +++|+.|++++|+|++..|
T Consensus 208 ~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 208 TEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred cceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 99999999999 8999888 9999999999999986543
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.91 E-value=1.3e-09 Score=110.74 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=80.1
Q ss_pred CCceeEEecCCCCc--------eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC--CCCCCCCCE-EEc
Q 010316 387 GYSWTGITCTYDRR--------IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD--LSSLMRLET-LHL 455 (513)
Q Consensus 387 ~~~w~gv~c~~~~l--------~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~--l~~l~~L~~-L~L 455 (513)
.|.+..|.|+..++ .+++.|+|++|+|+...+..|.+|++|+.|+|++|++.+.+|. |.++++|+. +.+
T Consensus 8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 46788899965432 3689999999999944445789999999999999999777663 678887765 667
Q ss_pred cCccCcccCCccccCCCCccEEEcccCcCC
Q 010316 456 EDNQFSGEIPSSLGKIQSLRELFLQNNNLT 485 (513)
Q Consensus 456 s~N~l~g~lP~~l~~l~~L~~L~L~~N~l~ 485 (513)
+.|+++...|..+..+++|++|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred cCCcccccCchhhhhccccccccccccccc
Confidence 778998777788899999999999999887
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.90 E-value=4.9e-12 Score=117.91 Aligned_cols=107 Identities=17% Similarity=0.307 Sum_probs=87.9
Q ss_pred CCceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCC--ccccCCCCcc
Q 010316 398 DRRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIP--SSLGKIQSLR 475 (513)
Q Consensus 398 ~~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP--~~l~~l~~L~ 475 (513)
..+++++.|++++|.++ .+|..+..+++|+.|+|++|++++ +|.+..+++|+.|+|++|++++ +| ..+..+++|+
T Consensus 67 ~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 67 SGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLE 143 (198)
T ss_dssp HHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCS
T ss_pred ccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CCccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCC
Confidence 34568999999999998 788888888999999999999987 4567788999999999999984 33 4688899999
Q ss_pred EEEcccCcCCCcCCCC----------cC-CCCcCEEECCCCCCCC
Q 010316 476 ELFLQNNNLTGQIPSS----------LI-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 476 ~L~L~~N~l~g~lp~~----------l~-l~~L~~L~l~~N~l~~ 509 (513)
+|++++|++++.+|.. +. +++|+.|+ +|.++.
T Consensus 144 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred EEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 9999999998766653 55 89999887 666654
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.88 E-value=7.7e-09 Score=109.04 Aligned_cols=80 Identities=21% Similarity=0.260 Sum_probs=51.0
Q ss_pred CceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEE
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELF 478 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 478 (513)
.+++++.|++++|++++ +| +..+++|+.|++++|.+++. +++.+++|+.|+|++|++++ +| +..+++|+.|+
T Consensus 168 ~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~ 239 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD 239 (457)
T ss_dssp TCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred cCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence 34566666666666664 44 56666666666666666654 35666666666666666664 55 66666666666
Q ss_pred cccCcCCC
Q 010316 479 LQNNNLTG 486 (513)
Q Consensus 479 L~~N~l~g 486 (513)
+++|++++
T Consensus 240 l~~N~l~~ 247 (457)
T 3bz5_A 240 CSVNPLTE 247 (457)
T ss_dssp CCSSCCSC
T ss_pred eeCCcCCC
Confidence 66666664
No 126
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.83 E-value=1.1e-08 Score=107.62 Aligned_cols=102 Identities=28% Similarity=0.468 Sum_probs=82.0
Q ss_pred eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcc
Q 010316 401 IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 480 (513)
.+++.|++++|.+++ +| .+.++++|+.|++++|.+.+ +|.+ .++|+.|++++|+++ .+|. ++.+++|++|+++
T Consensus 173 ~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~--~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL--PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYAD 245 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECC
T ss_pred ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC--cCcccEEECcCCcCC-cccc-cCCCCCCCEEECC
Confidence 478899999999985 66 58899999999999999886 4433 258999999999998 7884 8899999999999
Q ss_pred cCcCCCcCCCCcCCCCcCEEECCCCCCCCCCC
Q 010316 481 NNNLTGQIPSSLIKPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 481 ~N~l~g~lp~~l~l~~L~~L~l~~N~l~~~pp 512 (513)
+|+++ .+|.. +++|+.|++++|+++++|+
T Consensus 246 ~N~l~-~l~~~--~~~L~~L~l~~N~l~~l~~ 274 (454)
T 1jl5_A 246 NNLLK-TLPDL--PPSLEALNVRDNYLTDLPE 274 (454)
T ss_dssp SSCCS-SCCSC--CTTCCEEECCSSCCSCCCC
T ss_pred CCcCC-ccccc--ccccCEEECCCCcccccCc
Confidence 99998 46643 4678888888888877553
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.79 E-value=6.7e-09 Score=113.60 Aligned_cols=99 Identities=27% Similarity=0.352 Sum_probs=79.4
Q ss_pred eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcc
Q 010316 401 IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 480 (513)
++++.|++++|.++ .+|.. +++|+.|+|++|++++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|+
T Consensus 201 ~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp--~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 201 SELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP--VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVY 269 (622)
T ss_dssp TTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC--CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred chhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC--CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCC
Confidence 35566666666666 44432 3778899999998886 34 45688999999999998 6776 67889999999
Q ss_pred cCcCCCcCCCCcC-CCCcCEEECCCCCCCCCC
Q 010316 481 NNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 481 ~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~p 511 (513)
+|+|+ .+|..+. +++|+.|++++|++++.+
T Consensus 270 ~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 270 RNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp SSCCC-SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred CCCCC-cCCHHHhhccccCEEEecCCCCCCcC
Confidence 99999 8898888 999999999999998654
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.74 E-value=7.7e-10 Score=113.65 Aligned_cols=112 Identities=21% Similarity=0.286 Sum_probs=93.3
Q ss_pred ceeEEEeeecCCcCC--c---CCChhhhcCcCCCEEEccCCccc----ccCC-CCCCCCCCCEEEccCccCccc----CC
Q 010316 400 RIRIVTLNLTNMGLS--G---SLPSNISRLTALSGIWLGNNNLS----GTIP-DLSSLMRLETLHLEDNQFSGE----IP 465 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~--g---~ip~~l~~l~~L~~L~Ls~N~l~----g~~p-~l~~l~~L~~L~Ls~N~l~g~----lP 465 (513)
+++|+.|+|++|+++ | .++..+..+++|+.|+|++|.++ +.+| .+..+++|+.|+|++|++++. +|
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 347899999999987 3 34447889999999999999996 4455 368899999999999999865 56
Q ss_pred cccc--CCCCccEEEcccCcCCC----cCCCCc-C-CCCcCEEECCCCCCCCCC
Q 010316 466 SSLG--KIQSLRELFLQNNNLTG----QIPSSL-I-KPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 466 ~~l~--~l~~L~~L~L~~N~l~g----~lp~~l-~-l~~L~~L~l~~N~l~~~p 511 (513)
..+. .+++|++|+|++|++++ .+|..+ . +++|+.|++++|++++..
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 7774 48999999999999996 488887 4 899999999999998765
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.74 E-value=3e-08 Score=104.37 Aligned_cols=101 Identities=28% Similarity=0.386 Sum_probs=81.7
Q ss_pred eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcc
Q 010316 401 IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 480 (513)
++++.|++++|.+++ +| .++++++|+.|++++|++++ +|.. ..+|+.|++++|++++ +| .++.+++|++|+++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~--~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL--PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC--cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 478889999999985 77 58899999999999999886 4432 3589999999999985 67 58889999999999
Q ss_pred cCcCCCcCCCCcCCCCcCEEECCCCCCCCCC
Q 010316 481 NNNLTGQIPSSLIKPGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 481 ~N~l~g~lp~~l~l~~L~~L~l~~N~l~~~p 511 (513)
+|+++ .+|... .+|+.|++++|+++.+|
T Consensus 204 ~N~l~-~l~~~~--~~L~~L~l~~n~l~~lp 231 (454)
T 1jl5_A 204 NNSLK-KLPDLP--LSLESIVAGNNILEELP 231 (454)
T ss_dssp SSCCS-SCCCCC--TTCCEEECCSSCCSSCC
T ss_pred CCcCC-cCCCCc--CcccEEECcCCcCCccc
Confidence 99988 455433 58899999999888665
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.73 E-value=1.6e-08 Score=102.49 Aligned_cols=106 Identities=16% Similarity=0.191 Sum_probs=89.5
Q ss_pred EEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCc-cccCCCCccE-EEcc
Q 010316 404 VTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPS-SLGKIQSLRE-LFLQ 480 (513)
Q Consensus 404 ~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~-~l~~l~~L~~-L~L~ 480 (513)
+.++.++++++ .+|..+ .++++.|+|++|+|+...+. |.++++|+.|+|++|++.+.+|. .|.++++|++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 35788999999 888876 36899999999999977664 79999999999999999777764 6788988775 5677
Q ss_pred cCcCCCcCCCCcC-CCCcCEEECCCCCCCCCCC
Q 010316 481 NNNLTGQIPSSLI-KPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 481 ~N~l~g~lp~~l~-l~~L~~L~l~~N~l~~~pp 512 (513)
+|+++...|..+. +++|+.|++++|+|+.+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCc
Confidence 8999955566777 9999999999999998875
No 131
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.73 E-value=7.8e-10 Score=110.97 Aligned_cols=110 Identities=20% Similarity=0.303 Sum_probs=70.0
Q ss_pred CceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCC-ccccc-CCC-CCCCCCCCEEEccCc-cCccc-CCccccCCC-
Q 010316 399 RRIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNN-NLSGT-IPD-LSSLMRLETLHLEDN-QFSGE-IPSSLGKIQ- 472 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~-~p~-l~~l~~L~~L~Ls~N-~l~g~-lP~~l~~l~- 472 (513)
.+++|+.|+|++|.+++..+..+..+++|+.|+|++| .+++. ++. +..+++|+.|+|++| .+++. ++..+..++
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 195 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence 3456666777777666666666666777777777776 45542 333 456667777777777 66643 455566667
Q ss_pred CccEEEcccC--cCC-CcCCCCcC-CCCcCEEECCCCC-CC
Q 010316 473 SLRELFLQNN--NLT-GQIPSSLI-KPGLNLKTSPGNQ-LS 508 (513)
Q Consensus 473 ~L~~L~L~~N--~l~-g~lp~~l~-l~~L~~L~l~~N~-l~ 508 (513)
+|++|+|++| .++ +.+|..+. +++|+.|++++|. ++
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 236 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC
Confidence 7777777777 344 34555555 7777777777776 44
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.71 E-value=2e-09 Score=110.57 Aligned_cols=109 Identities=21% Similarity=0.291 Sum_probs=93.4
Q ss_pred eeEEEeeecCCcCC-cCCC---hhhhcCcCCCEEEccCCccc--c---cCC-CCCCCCCCCEEEccCccCc----ccCCc
Q 010316 401 IRIVTLNLTNMGLS-GSLP---SNISRLTALSGIWLGNNNLS--G---TIP-DLSSLMRLETLHLEDNQFS----GEIPS 466 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~-g~ip---~~l~~l~~L~~L~Ls~N~l~--g---~~p-~l~~l~~L~~L~Ls~N~l~----g~lP~ 466 (513)
++|+.|+|++|+++ +.++ ..+..+++|+.|+|++|.+. | .++ .+..+++|+.|+|++|.++ +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 57899999999997 4555 57888999999999999998 3 455 6788999999999999996 67888
Q ss_pred cccCCCCccEEEcccCcCCCc----CCCCc--C-CCCcCEEECCCCCCCC
Q 010316 467 SLGKIQSLRELFLQNNNLTGQ----IPSSL--I-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 467 ~l~~l~~L~~L~L~~N~l~g~----lp~~l--~-l~~L~~L~l~~N~l~~ 509 (513)
.+..+++|++|+|++|++++. +|..+ . +++|+.|++++|+|+.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 999999999999999999855 55655 4 7899999999999875
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.66 E-value=6.7e-08 Score=105.63 Aligned_cols=98 Identities=30% Similarity=0.409 Sum_probs=70.3
Q ss_pred eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcc
Q 010316 401 IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 480 (513)
++++.|+|++|+++ .+|. .+++|+.|+|++|+++.. |. .+++|+.|+|++|+++ .+|. .+++|+.|+|+
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-p~--~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL-PV--LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCC-CC--CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECC
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcC-CC--CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECC
Confidence 46777888888777 5665 467788888888887743 33 5677888888888887 4555 45678888888
Q ss_pred cCcCCCcCCCCcCCCCcCEEECCCCCCCCCCC
Q 010316 481 NNNLTGQIPSSLIKPGLNLKTSPGNQLSSPPP 512 (513)
Q Consensus 481 ~N~l~g~lp~~l~l~~L~~L~l~~N~l~~~pp 512 (513)
+|+++ .+|.. +++|+.|++++|+++++|+
T Consensus 130 ~N~l~-~lp~~--l~~L~~L~Ls~N~l~~l~~ 158 (622)
T 3g06_A 130 GNQLT-SLPVL--PPGLQELSVSDNQLASLPA 158 (622)
T ss_dssp SSCCS-CCCCC--CTTCCEEECCSSCCSCCCC
T ss_pred CCCCC-cCCCC--CCCCCEEECcCCcCCCcCC
Confidence 88877 56653 4678888888888877653
No 134
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.64 E-value=3.1e-09 Score=106.56 Aligned_cols=108 Identities=17% Similarity=0.145 Sum_probs=93.2
Q ss_pred eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCccccc-CCC-CCCCCCCCEEEccCccCcccCCccccCCCCccEEE
Q 010316 401 IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGT-IPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELF 478 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 478 (513)
.+++.|++++|.+.+..+. +.++++|+.|+|++|.+.+. ++. +..+++|+.|+|++|++++..|..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5789999999999976665 67899999999999999865 554 68899999999999999988888999999999999
Q ss_pred cccC-cCCCc-CCCCcC-CCCcCEEECCCC-CCCC
Q 010316 479 LQNN-NLTGQ-IPSSLI-KPGLNLKTSPGN-QLSS 509 (513)
Q Consensus 479 L~~N-~l~g~-lp~~l~-l~~L~~L~l~~N-~l~~ 509 (513)
|++| .+++. ++..+. +++|+.|++++| .+++
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh
Confidence 9999 67753 666666 999999999999 8764
No 135
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.58 E-value=6e-09 Score=106.20 Aligned_cols=109 Identities=19% Similarity=0.225 Sum_probs=88.1
Q ss_pred eeEEEeeecCCcCCcCCC----hhhhcCc-CCCEEEccCCcccccCCC-CCCC-----CCCCEEEccCccCcccCCccc-
Q 010316 401 IRIVTLNLTNMGLSGSLP----SNISRLT-ALSGIWLGNNNLSGTIPD-LSSL-----MRLETLHLEDNQFSGEIPSSL- 468 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip----~~l~~l~-~L~~L~Ls~N~l~g~~p~-l~~l-----~~L~~L~Ls~N~l~g~lP~~l- 468 (513)
.+++.|+|++|.+++..+ ..+..++ +|+.|+|++|.+.+..+. +..+ ++|+.|+|++|++++..+..+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 459999999999996666 6788898 899999999999877653 4333 899999999999997766644
Q ss_pred ---cCC-CCccEEEcccCcCCCcCCCCcC------CCCcCEEECCCCCCCC
Q 010316 469 ---GKI-QSLRELFLQNNNLTGQIPSSLI------KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 469 ---~~l-~~L~~L~L~~N~l~g~lp~~l~------l~~L~~L~l~~N~l~~ 509 (513)
..+ ++|++|+|++|++++..+..+. ..+|+.|++++|+|+.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 444 8999999999999855444433 2589999999999874
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.58 E-value=5.4e-09 Score=106.50 Aligned_cols=110 Identities=25% Similarity=0.310 Sum_probs=89.0
Q ss_pred eEEEeeecCCcCCcCCChhhhcC-----cCCCEEEccCCcccccCCC-----CCCC-CCCCEEEccCccCcccCCccc--
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRL-----TALSGIWLGNNNLSGTIPD-----LSSL-MRLETLHLEDNQFSGEIPSSL-- 468 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l-----~~L~~L~Ls~N~l~g~~p~-----l~~l-~~L~~L~Ls~N~l~g~lP~~l-- 468 (513)
+++.|+|++|.+++..+..+..+ ++|+.|+|++|.+++..+. +..+ ++|+.|+|++|++++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 79999999999998878777775 9999999999999987664 4445 899999999999986655443
Q ss_pred --cC-CCCccEEEcccCcCCCcCCCC----cC-C-CCcCEEECCCCCCCCCC
Q 010316 469 --GK-IQSLRELFLQNNNLTGQIPSS----LI-K-PGLNLKTSPGNQLSSPP 511 (513)
Q Consensus 469 --~~-l~~L~~L~L~~N~l~g~lp~~----l~-l-~~L~~L~l~~N~l~~~p 511 (513)
.. .++|++|+|++|++++.-+.. +. + .+|+.|++++|++++..
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 34 369999999999998533333 33 4 49999999999997654
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.35 E-value=1.8e-08 Score=105.50 Aligned_cols=83 Identities=18% Similarity=0.292 Sum_probs=39.5
Q ss_pred CCCEEEccCCcccccC----C-CCCCCCCCCEEEccCccCcccCCccccC-----CCCccEEEcccCcCCC----cCCCC
Q 010316 426 ALSGIWLGNNNLSGTI----P-DLSSLMRLETLHLEDNQFSGEIPSSLGK-----IQSLRELFLQNNNLTG----QIPSS 491 (513)
Q Consensus 426 ~L~~L~Ls~N~l~g~~----p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~-----l~~L~~L~L~~N~l~g----~lp~~ 491 (513)
+|+.|++++|.+++.. + .+..+++|+.|+|++|++++..+..+.. .++|++|+|++|++++ .+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 4445555554444321 1 1233455555555555554332222221 3455555555555553 44444
Q ss_pred cC-CCCcCEEECCCCCCC
Q 010316 492 LI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 492 l~-l~~L~~L~l~~N~l~ 508 (513)
+. +++|+.|++++|+++
T Consensus 394 l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 394 LLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHCCCCCEEECCSSSCC
T ss_pred HHhCCCccEEECCCCCCC
Confidence 44 555555555555554
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.30 E-value=6.5e-08 Score=101.20 Aligned_cols=110 Identities=23% Similarity=0.226 Sum_probs=88.4
Q ss_pred ceeEEEeeecCCcCCcC----CChhhhcCcCCCEEEccCCcccccCCC-C-----CCCCCCCEEEccCccCccc----CC
Q 010316 400 RIRIVTLNLTNMGLSGS----LPSNISRLTALSGIWLGNNNLSGTIPD-L-----SSLMRLETLHLEDNQFSGE----IP 465 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l-----~~l~~L~~L~Ls~N~l~g~----lP 465 (513)
+++++.|++++|.+++. ++..+.++++|+.|+|++|.+....+. + ...++|+.|+|++|.+++. +|
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 46799999999999853 777888899999999999998754332 2 2346999999999999865 56
Q ss_pred ccccCCCCccEEEcccCcCCCcCCCCcC------CCCcCEEECCCCCCCC
Q 010316 466 SSLGKIQSLRELFLQNNNLTGQIPSSLI------KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 466 ~~l~~l~~L~~L~L~~N~l~g~lp~~l~------l~~L~~L~l~~N~l~~ 509 (513)
..+..+++|++|+|++|++++..+..+. .++|+.|++++|+++.
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 7778889999999999999854443333 4699999999999873
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.20 E-value=1.4e-07 Score=96.62 Aligned_cols=108 Identities=21% Similarity=0.242 Sum_probs=74.5
Q ss_pred eeEEEeeecCCcCCcCCChhh-----hcCcCCCEEEccCCcccccC----C-CCCCCCCCCEEEccCccCccc----CCc
Q 010316 401 IRIVTLNLTNMGLSGSLPSNI-----SRLTALSGIWLGNNNLSGTI----P-DLSSLMRLETLHLEDNQFSGE----IPS 466 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l-----~~l~~L~~L~Ls~N~l~g~~----p-~l~~l~~L~~L~Ls~N~l~g~----lP~ 466 (513)
.+++.|+|++|.++..-...+ ...+.|+.|+|++|.++... + .+..+++|+.|+|++|+++.. ++.
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 467888888888864333333 23577888888888886421 1 135677888888888888642 345
Q ss_pred cccCCCCccEEEcccCcCCCc----CCCCcC-CCCcCEEECCCCCCC
Q 010316 467 SLGKIQSLRELFLQNNNLTGQ----IPSSLI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 467 ~l~~l~~L~~L~L~~N~l~g~----lp~~l~-l~~L~~L~l~~N~l~ 508 (513)
.+..+++|++|+|++|.|++. +...+. .++|+.|+|++|.|+
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 566777888888888888742 233333 578888888888875
No 140
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.13 E-value=5.9e-07 Score=87.49 Aligned_cols=78 Identities=27% Similarity=0.355 Sum_probs=54.8
Q ss_pred hcCcCCCEEEccCCccccc--CCC-CCCCCCCCEEEccCccCcccCCccccCCC--CccEEEcccCcCCCcCCCC-----
Q 010316 422 SRLTALSGIWLGNNNLSGT--IPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQ--SLRELFLQNNNLTGQIPSS----- 491 (513)
Q Consensus 422 ~~l~~L~~L~Ls~N~l~g~--~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~--~L~~L~L~~N~l~g~lp~~----- 491 (513)
.++++|+.|+|++|+|++. +|. +..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+.+.+|..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4677888888888888763 333 35778888888888888753 2334343 7888888888888766632
Q ss_pred --cC-CCCcCEEE
Q 010316 492 --LI-KPGLNLKT 501 (513)
Q Consensus 492 --l~-l~~L~~L~ 501 (513)
+. +++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 34 78888776
No 141
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.08 E-value=1.5e-06 Score=84.70 Aligned_cols=78 Identities=23% Similarity=0.310 Sum_probs=65.0
Q ss_pred ceeEEEeeecCCcCCc--CCChhhhcCcCCCEEEccCCcccccCCCCCCCC--CCCEEEccCccCcccCCc-------cc
Q 010316 400 RIRIVTLNLTNMGLSG--SLPSNISRLTALSGIWLGNNNLSGTIPDLSSLM--RLETLHLEDNQFSGEIPS-------SL 468 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~--~L~~L~Ls~N~l~g~lP~-------~l 468 (513)
+++|+.|+|++|.|++ .+|..+..+++|+.|+|++|+|.+. .++..+. +|+.|+|++|.+.+.+|+ .+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 4689999999999997 5677888999999999999999975 3333333 999999999999988873 36
Q ss_pred cCCCCccEEE
Q 010316 469 GKIQSLRELF 478 (513)
Q Consensus 469 ~~l~~L~~L~ 478 (513)
..+++|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 7889999875
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.03 E-value=4e-07 Score=93.28 Aligned_cols=109 Identities=17% Similarity=0.140 Sum_probs=83.7
Q ss_pred eeEEEeeecCCcCCcCCChhh-hcCcCCCEEEccCCcccccCCC-C-----CCCCCCCEEEccCccCcc----cCCcccc
Q 010316 401 IRIVTLNLTNMGLSGSLPSNI-SRLTALSGIWLGNNNLSGTIPD-L-----SSLMRLETLHLEDNQFSG----EIPSSLG 469 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l-~~l~~L~~L~Ls~N~l~g~~p~-l-----~~l~~L~~L~Ls~N~l~g----~lP~~l~ 469 (513)
.+|+.|+|++|.++..-...+ ..+++|+.|+|++|.++..... + ...+.|+.|+|++|.++. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 579999999999874322222 3467899999999999754322 2 356889999999999974 2455667
Q ss_pred CCCCccEEEcccCcCCC----cCCCCcC-CCCcCEEECCCCCCCC
Q 010316 470 KIQSLRELFLQNNNLTG----QIPSSLI-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 470 ~l~~L~~L~L~~N~l~g----~lp~~l~-l~~L~~L~l~~N~l~~ 509 (513)
.+++|++|+|++|+|++ .++..+. .++|+.|+|++|.|+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 88999999999999974 2345555 7899999999999863
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.02 E-value=4e-07 Score=83.73 Aligned_cols=108 Identities=20% Similarity=0.168 Sum_probs=82.5
Q ss_pred eeEEEeeecCC-cCCc----CCChhhhcCcCCCEEEccCCcccccC----C-CCCCCCCCCEEEccCccCccc----CCc
Q 010316 401 IRIVTLNLTNM-GLSG----SLPSNISRLTALSGIWLGNNNLSGTI----P-DLSSLMRLETLHLEDNQFSGE----IPS 466 (513)
Q Consensus 401 ~~l~~L~Ls~n-~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~~----p-~l~~l~~L~~L~Ls~N~l~g~----lP~ 466 (513)
+.++.|+|++| .+.. .+...+...++|++|+|++|.+...- . .+...+.|+.|+|++|.++.. +.+
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 46889999999 8863 35556777899999999999986431 1 145567899999999999753 456
Q ss_pred cccCCCCccEEEc--ccCcCCCc----CCCCcC-CCCcCEEECCCCCCC
Q 010316 467 SLGKIQSLRELFL--QNNNLTGQ----IPSSLI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 467 ~l~~l~~L~~L~L--~~N~l~g~----lp~~l~-l~~L~~L~l~~N~l~ 508 (513)
.+...++|++|+| ++|.+... +...+. .+.|+.|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 6778889999999 88998743 233344 688999999999763
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=1.6e-05 Score=79.47 Aligned_cols=99 Identities=17% Similarity=0.109 Sum_probs=81.6
Q ss_pred eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCC-CCCCCCCCC-EEEccCccCcccCCccccCCCCccEEE
Q 010316 401 IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLE-TLHLEDNQFSGEIPSSLGKIQSLRELF 478 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~-~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 478 (513)
++|+.|+|++|+++..-+..|.+|++|+.|+|.+| +....+ .|.++.+|+ .++|.+ +++..-+..|.+|++|+.|+
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 46889999999998444557999999999999998 664444 388999999 999998 77745567899999999999
Q ss_pred cccCcCCCcCCC-CcC-CCCcCEEEC
Q 010316 479 LQNNNLTGQIPS-SLI-KPGLNLKTS 502 (513)
Q Consensus 479 L~~N~l~g~lp~-~l~-l~~L~~L~l 502 (513)
+++|+++ .++. .|. +++|+.++.
T Consensus 304 l~~n~i~-~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATGDKIT-TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred eCCCccC-ccchhhhcCCcchhhhcc
Confidence 9999999 6655 555 999999874
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.93 E-value=8.4e-07 Score=95.76 Aligned_cols=109 Identities=11% Similarity=0.021 Sum_probs=65.9
Q ss_pred eeEEEeeec----CCcCCcC-----CChhhhcCcCCCEEEccCCc--ccccCC-CC-CCCCCCCEEEccCccCcc-cCCc
Q 010316 401 IRIVTLNLT----NMGLSGS-----LPSNISRLTALSGIWLGNNN--LSGTIP-DL-SSLMRLETLHLEDNQFSG-EIPS 466 (513)
Q Consensus 401 ~~l~~L~Ls----~n~l~g~-----ip~~l~~l~~L~~L~Ls~N~--l~g~~p-~l-~~l~~L~~L~Ls~N~l~g-~lP~ 466 (513)
++++.|+++ .|.+++. ++..+.++++|+.|+++.|. +++... .+ ..+++|+.|+|++|++++ .++.
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 482 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME 482 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH
Confidence 356666664 4555542 33335566777777775432 333322 12 336777888888777765 3445
Q ss_pred cccCCCCccEEEcccCcCCCcC-CCCcC-CCCcCEEECCCCCCCC
Q 010316 467 SLGKIQSLRELFLQNNNLTGQI-PSSLI-KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 467 ~l~~l~~L~~L~L~~N~l~g~l-p~~l~-l~~L~~L~l~~N~l~~ 509 (513)
.+..+++|++|+|++|+|++.. +.... +++|+.|++++|+++.
T Consensus 483 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 483 FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 5567777888888888776442 33333 7778888888887764
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.74 E-value=6e-05 Score=75.24 Aligned_cols=86 Identities=14% Similarity=0.152 Sum_probs=71.8
Q ss_pred CcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCcccCCccccCCCCcc-EEEcccCcCCCcCC-CCcC-CCCcCE
Q 010316 424 LTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFSGEIPSSLGKIQSLR-ELFLQNNNLTGQIP-SSLI-KPGLNL 499 (513)
Q Consensus 424 l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~-~L~L~~N~l~g~lp-~~l~-l~~L~~ 499 (513)
+++|+.|+|++|+++...+. |..+.+|+.|+|++| ++..-+..|.++.+|+ .+.|.+ +++ .++ ..|. +.+|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCE
Confidence 78999999999999865553 899999999999998 7745556799999999 999988 777 555 5566 999999
Q ss_pred EECCCCCCCCCCC
Q 010316 500 KTSPGNQLSSPPP 512 (513)
Q Consensus 500 L~l~~N~l~~~pp 512 (513)
|++.+|+++.+++
T Consensus 302 l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 302 VLATGDKITTLGD 314 (329)
T ss_dssp EEECSSCCCEECT
T ss_pred EEeCCCccCccch
Confidence 9999998877654
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.65 E-value=1.7e-05 Score=85.42 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=28.1
Q ss_pred eeEEEeeecCCcCC----cCCChhhhcCcCCCEEEccCCcccccCCCCCCCCCCCEEEcc
Q 010316 401 IRIVTLNLTNMGLS----GSLPSNISRLTALSGIWLGNNNLSGTIPDLSSLMRLETLHLE 456 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~----g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~l~~l~~L~~L~Ls 456 (513)
++|+.|++++|.++ +.++..+.++++|+.|++++|.+.+....+..+++|+.|+++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence 45566666666654 233334445566666666666555422223344444444444
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.53 E-value=1.2e-05 Score=81.81 Aligned_cols=109 Identities=18% Similarity=0.189 Sum_probs=72.3
Q ss_pred ceeEEEeeecCCcCCcCCChhhh--cCcCCCEEEccC--Cccccc--C----CCC--CCCCCCCEEEccCccCcccCCcc
Q 010316 400 RIRIVTLNLTNMGLSGSLPSNIS--RLTALSGIWLGN--NNLSGT--I----PDL--SSLMRLETLHLEDNQFSGEIPSS 467 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g~ip~~l~--~l~~L~~L~Ls~--N~l~g~--~----p~l--~~l~~L~~L~Ls~N~l~g~lP~~ 467 (513)
+++|+.|+|..+++....-..+. .+++|+.|+|+. |...+. + +.+ ..+++|+.|+|++|++....+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 35678888887776543333344 688899888853 222121 1 112 34788999999988887543333
Q ss_pred c---cCCCCccEEEcccCcCCCc----CCCCcC-CCCcCEEECCCCCCC
Q 010316 468 L---GKIQSLRELFLQNNNLTGQ----IPSSLI-KPGLNLKTSPGNQLS 508 (513)
Q Consensus 468 l---~~l~~L~~L~L~~N~l~g~----lp~~l~-l~~L~~L~l~~N~l~ 508 (513)
+ ..+++|++|+|+.|.+.+. ++..+. +++|+.|+++.|.|+
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 3 2467899999999888752 444445 788999999988775
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.48 E-value=4e-06 Score=90.36 Aligned_cols=106 Identities=11% Similarity=0.033 Sum_probs=64.1
Q ss_pred eeEEEeeec--C----CcCCcC-----CChhhhcCcCCCEEEccCCcccccCC-CCCC-CCCCCEEEccCccCcccCCcc
Q 010316 401 IRIVTLNLT--N----MGLSGS-----LPSNISRLTALSGIWLGNNNLSGTIP-DLSS-LMRLETLHLEDNQFSGEIPSS 467 (513)
Q Consensus 401 ~~l~~L~Ls--~----n~l~g~-----ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~-l~~L~~L~Ls~N~l~g~lP~~ 467 (513)
++++.|+++ + +.+++. ++..+..+++|+.|+|++ .++.... .+.. +++|+.|+|++|.+++..+..
T Consensus 397 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~ 475 (594)
T 2p1m_B 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH 475 (594)
T ss_dssp TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHH
T ss_pred CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHH
Confidence 456677776 3 344411 112255667777777766 4433222 2333 677888888888776554444
Q ss_pred c-cCCCCccEEEcccCcCCCcCCC-CcC-CCCcCEEECCCCCC
Q 010316 468 L-GKIQSLRELFLQNNNLTGQIPS-SLI-KPGLNLKTSPGNQL 507 (513)
Q Consensus 468 l-~~l~~L~~L~L~~N~l~g~lp~-~l~-l~~L~~L~l~~N~l 507 (513)
+ ..+++|+.|+|++|++++.... ... +++|+.|++++|++
T Consensus 476 l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 476 VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 4 5577888888888887543333 223 67788888888766
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.44 E-value=1.4e-05 Score=86.16 Aligned_cols=82 Identities=15% Similarity=0.166 Sum_probs=38.9
Q ss_pred eEEEeeecCCcCCcCCChhhh-cCcCCCEEEccCC-ccccc-CCCC-CCCCCCCEEEccCccCcccCCcccc----CCCC
Q 010316 402 RIVTLNLTNMGLSGSLPSNIS-RLTALSGIWLGNN-NLSGT-IPDL-SSLMRLETLHLEDNQFSGEIPSSLG----KIQS 473 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~-~l~~L~~L~Ls~N-~l~g~-~p~l-~~l~~L~~L~Ls~N~l~g~lP~~l~----~l~~ 473 (513)
+|+.|+|+++.+++..+..+. .+++|+.|+|++| .++.. ++.+ ..+++|+.|+|++|.+++..+..+. .+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 455555555555544444443 4555555555555 33221 2222 2455555555555555443332222 3445
Q ss_pred ccEEEcccCc
Q 010316 474 LRELFLQNNN 483 (513)
Q Consensus 474 L~~L~L~~N~ 483 (513)
|++|+|++|.
T Consensus 186 L~~L~l~~~~ 195 (594)
T 2p1m_B 186 LVSLNISCLA 195 (594)
T ss_dssp CCEEECTTCC
T ss_pred CcEEEecccC
Confidence 5555555554
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.33 E-value=4.2e-05 Score=70.01 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=71.8
Q ss_pred CCChhhhcCcCCCEEEccCC-cccccC-----CCCCCCCCCCEEEccCccCccc----CCccccCCCCccEEEcccCcCC
Q 010316 416 SLPSNISRLTALSGIWLGNN-NLSGTI-----PDLSSLMRLETLHLEDNQFSGE----IPSSLGKIQSLRELFLQNNNLT 485 (513)
Q Consensus 416 ~ip~~l~~l~~L~~L~Ls~N-~l~g~~-----p~l~~l~~L~~L~Ls~N~l~g~----lP~~l~~l~~L~~L~L~~N~l~ 485 (513)
.+...+...+.|+.|+|++| .+...- ..+...++|+.|+|++|++... +.+.+...++|++|+|++|.|.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34456777899999999999 886431 1246678999999999999743 3445666789999999999998
Q ss_pred Cc----CCCCcC-CCCcCEEEC--CCCCCC
Q 010316 486 GQ----IPSSLI-KPGLNLKTS--PGNQLS 508 (513)
Q Consensus 486 g~----lp~~l~-l~~L~~L~l--~~N~l~ 508 (513)
.. +...+. .+.|+.|+| ++|.|.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 43 445566 788999999 889885
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.84 E-value=0.00027 Score=64.11 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=61.4
Q ss_pred eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCc-cccc-CCCCCCC----CCCCEEEccCcc-CcccCCccccCCCC
Q 010316 401 IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNN-LSGT-IPDLSSL----MRLETLHLEDNQ-FSGEIPSSLGKIQS 473 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~-~p~l~~l----~~L~~L~Ls~N~-l~g~lP~~l~~l~~ 473 (513)
-+|+.|+++++.++..--..+..|++|+.|+|++|. ++-. +..+..+ ++|+.|+|++|. ++..-=..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 369999999999875444557889999999999985 5422 2224443 479999999985 76433345778899
Q ss_pred ccEEEcccCc
Q 010316 474 LRELFLQNNN 483 (513)
Q Consensus 474 L~~L~L~~N~ 483 (513)
|++|+|+++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999874
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.69 E-value=0.0039 Score=64.12 Aligned_cols=85 Identities=16% Similarity=0.163 Sum_probs=38.2
Q ss_pred hhhhcCcCCCEEEccCCcccc----cCC--CCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcccCcCCCcCC-CC
Q 010316 419 SNISRLTALSGIWLGNNNLSG----TIP--DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIP-SS 491 (513)
Q Consensus 419 ~~l~~l~~L~~L~Ls~N~l~g----~~p--~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp-~~ 491 (513)
..|.+|++|+.+.+.+|.+.. .++ .|..|++|+.++|.+ .++-.-...|.+|++|+.+.|..| ++ .++ ..
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~a 341 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSA 341 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EECTTS
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHh
Confidence 345555555555555554430 112 144555555555552 233222334455555555555333 33 232 22
Q ss_pred cC-CCCcCEEECCCCCC
Q 010316 492 LI-KPGLNLKTSPGNQL 507 (513)
Q Consensus 492 l~-l~~L~~L~l~~N~l 507 (513)
|. + +|+.+++.+|.+
T Consensus 342 F~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp SSSS-CCCEEEECCSSC
T ss_pred CCCC-CCCEEEEcCCCC
Confidence 33 4 555555555543
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.36 E-value=0.00051 Score=62.26 Aligned_cols=84 Identities=12% Similarity=0.090 Sum_probs=61.8
Q ss_pred cCCCEEEccCCccccc-CCCCCCCCCCCEEEccCcc-CcccCCccccCC----CCccEEEcccCc-CCCcCCCCcC-CCC
Q 010316 425 TALSGIWLGNNNLSGT-IPDLSSLMRLETLHLEDNQ-FSGEIPSSLGKI----QSLRELFLQNNN-LTGQIPSSLI-KPG 496 (513)
Q Consensus 425 ~~L~~L~Ls~N~l~g~-~p~l~~l~~L~~L~Ls~N~-l~g~lP~~l~~l----~~L~~L~L~~N~-l~g~lp~~l~-l~~ 496 (513)
-.|+.|||+++.++-. +..+..+++|+.|+|++|. ++..-=..+..+ ++|++|+|+++. ++..--..+. +++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3699999999998643 3457889999999999995 664322345554 479999999974 7632223445 899
Q ss_pred cCEEECCCCC-CC
Q 010316 497 LNLKTSPGNQ-LS 508 (513)
Q Consensus 497 L~~L~l~~N~-l~ 508 (513)
|+.|+++++. ++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 9999999975 44
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.23 E-value=0.0034 Score=63.65 Aligned_cols=107 Identities=16% Similarity=0.193 Sum_probs=72.7
Q ss_pred CceeEEEeeecCCc-CCcCCChhhhcCcCCCEEEccCCcccccCC-CC--CCCCCCCEEEccC--ccCccc-----CCcc
Q 010316 399 RRIRIVTLNLTNMG-LSGSLPSNISRLTALSGIWLGNNNLSGTIP-DL--SSLMRLETLHLED--NQFSGE-----IPSS 467 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~-l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l--~~l~~L~~L~Ls~--N~l~g~-----lP~~ 467 (513)
.+++|+.|.|+++. + .++. + .+++|+.|+|..+.+....- .+ ..+++|+.|+|+. |...|. +...
T Consensus 170 ~~P~L~~L~L~g~~~l--~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL--SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBTC--BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred cCCCCcEEEEeCCCCc--eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 34689999998873 3 3444 3 37899999999888754322 23 3689999999863 322211 1122
Q ss_pred c--cCCCCccEEEcccCcCCCcCCCCcC----CCCcCEEECCCCCCCC
Q 010316 468 L--GKIQSLRELFLQNNNLTGQIPSSLI----KPGLNLKTSPGNQLSS 509 (513)
Q Consensus 468 l--~~l~~L~~L~L~~N~l~g~lp~~l~----l~~L~~L~l~~N~l~~ 509 (513)
+ ..+++|++|+|.+|.+.+..+..+. +++|+.|+|+.|.|..
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 2 3578999999999998754332222 7789999999998864
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.20 E-value=0.0082 Score=51.39 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=39.3
Q ss_pred CEEEccCCccc-ccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcccCcCC
Q 010316 428 SGIWLGNNNLS-GTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLT 485 (513)
Q Consensus 428 ~~L~Ls~N~l~-g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~ 485 (513)
..++.+++.++ ..+| .+ ..+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46788888886 2344 32 345888888888888443445677888888888888775
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.89 E-value=0.018 Score=59.08 Aligned_cols=104 Identities=9% Similarity=0.048 Sum_probs=77.1
Q ss_pred CceeEEEeeecCCcCC-----cCCChhhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcccCCccccCCC
Q 010316 399 RRIRIVTLNLTNMGLS-----GSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQ 472 (513)
Q Consensus 399 ~l~~l~~L~Ls~n~l~-----g~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~ 472 (513)
++.+|+.+.+.++.+. ..-+..|.+|++|+.+.|.. .+..... .|.+|.+|+.+.|..| ++..-+..|..+
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~- 345 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT- 345 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-
Confidence 3457888888887664 23445789999999999994 4654433 3788999999999765 653455688888
Q ss_pred CccEEEcccCcCCCcCCC-CcC-C-CCcCEEECCCCC
Q 010316 473 SLRELFLQNNNLTGQIPS-SLI-K-PGLNLKTSPGNQ 506 (513)
Q Consensus 473 ~L~~L~L~~N~l~g~lp~-~l~-l-~~L~~L~l~~N~ 506 (513)
+|+.|.+.+|.+. .++. .+. + ..++.|++..+.
T Consensus 346 ~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 346 GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHHH
Confidence 9999999999887 4544 444 5 478888877654
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.82 E-value=0.015 Score=49.69 Aligned_cols=55 Identities=31% Similarity=0.461 Sum_probs=43.1
Q ss_pred EeeecCCcCC-cCCChhhhcCcCCCEEEccCCcccccCCC-CCCCCCCCEEEccCccCc
Q 010316 405 TLNLTNMGLS-GSLPSNISRLTALSGIWLGNNNLSGTIPD-LSSLMRLETLHLEDNQFS 461 (513)
Q Consensus 405 ~L~Ls~n~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-l~~l~~L~~L~Ls~N~l~ 461 (513)
.++.++++|+ ..+|..+. ++|+.|+|++|+|+...+. |..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5677777775 35665433 4689999999999977665 688999999999999764
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.71 E-value=0.0015 Score=60.25 Aligned_cols=105 Identities=21% Similarity=0.176 Sum_probs=70.1
Q ss_pred eEEEeeecCC-cCCc----CCChhhhcCcCCCEEEccCCcccccCC-C----CCCCCCCCEEEccCccCccc----CCcc
Q 010316 402 RIVTLNLTNM-GLSG----SLPSNISRLTALSGIWLGNNNLSGTIP-D----LSSLMRLETLHLEDNQFSGE----IPSS 467 (513)
Q Consensus 402 ~l~~L~Ls~n-~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~----l~~l~~L~~L~Ls~N~l~g~----lP~~ 467 (513)
.|+.|+|++| .|.. .+-+.+..-+.|+.|+|++|.|.-.-- . +..-+.|+.|+|++|+|+.. +-+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 5778888875 6652 345566677889999999998863211 1 34457799999999998743 3345
Q ss_pred ccCCCCccEEEcccC---cCCCc----CCCCcC-CCCcCEEECCCCC
Q 010316 468 LGKIQSLRELFLQNN---NLTGQ----IPSSLI-KPGLNLKTSPGNQ 506 (513)
Q Consensus 468 l~~l~~L~~L~L~~N---~l~g~----lp~~l~-l~~L~~L~l~~N~ 506 (513)
+..-+.|++|+|++| .+... +...+. -+.|..|+++.|.
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 566677999999865 33311 223334 5678888888764
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.71 E-value=0.015 Score=53.56 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=62.2
Q ss_pred hhhcCcCCCEEEccCC-ccccc----C-CCCCCCCCCCEEEccCccCccc----CCccccCCCCccEEEcccCcCCCc--
Q 010316 420 NISRLTALSGIWLGNN-NLSGT----I-PDLSSLMRLETLHLEDNQFSGE----IPSSLGKIQSLRELFLQNNNLTGQ-- 487 (513)
Q Consensus 420 ~l~~l~~L~~L~Ls~N-~l~g~----~-p~l~~l~~L~~L~Ls~N~l~g~----lP~~l~~l~~L~~L~L~~N~l~g~-- 487 (513)
.+.+-+.|+.|+|++| .|... + ..+..-+.|+.|+|++|++... +.+.+..-+.|++|+|+.|.|...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3455678999999986 76422 1 1245678899999999999743 334455668999999999999742
Q ss_pred --CCCCcC-CCCcCEEECCCC
Q 010316 488 --IPSSLI-KPGLNLKTSPGN 505 (513)
Q Consensus 488 --lp~~l~-l~~L~~L~l~~N 505 (513)
+-+.+. -..|+.|+|++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 223344 567999999875
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.56 E-value=0.21 Score=50.54 Aligned_cols=101 Identities=9% Similarity=0.130 Sum_probs=53.3
Q ss_pred eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCccEEEc
Q 010316 401 IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFL 479 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 479 (513)
..|+.+.+. +.++..-...|.+|.+|+.+.|..+ ++..-. .|.+|.+|+.+.|..+ ++..-...|.+|.+|+.+.+
T Consensus 288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 455666664 3344223345777777888877654 332222 3677778888877654 44222346777788888887
Q ss_pred ccCcCCCcCCCCcC-CCCcCEEECCCCCC
Q 010316 480 QNNNLTGQIPSSLI-KPGLNLKTSPGNQL 507 (513)
Q Consensus 480 ~~N~l~g~lp~~l~-l~~L~~L~l~~N~l 507 (513)
.+|.... ..+. ..+|+.+.+..|.+
T Consensus 365 ~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 365 SGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp SSCHHHH---HTCBCCCCC----------
T ss_pred CCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 7765431 2333 66777777666543
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.07 E-value=0.19 Score=50.40 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=26.4
Q ss_pred hhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCccEEEc
Q 010316 420 NISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFL 479 (513)
Q Consensus 420 ~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 479 (513)
.|.+|++|+.+.+.++.++..-. .|.++.+|+.+.|..+ ++-.-..+|.++.+|+.+.+
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 34455555555555544442222 2445555555555432 32112234445555555444
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.54 E-value=0.24 Score=50.11 Aligned_cols=101 Identities=12% Similarity=0.227 Sum_probs=68.5
Q ss_pred eeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCccEEEc
Q 010316 401 IRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFL 479 (513)
Q Consensus 401 ~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L 479 (513)
..++.+.+..+-.. .-...+.+++.|+.+.+.. .+..... .|.++.+|+.++|..+ ++..-...|.+|.+|+.+.|
T Consensus 265 ~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 265 AYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 45666666554332 3344678888999998863 4443322 3788899999999765 54233457888999999998
Q ss_pred ccCcCCCcCCC-CcC-CCCcCEEECCCCC
Q 010316 480 QNNNLTGQIPS-SLI-KPGLNLKTSPGNQ 506 (513)
Q Consensus 480 ~~N~l~g~lp~-~l~-l~~L~~L~l~~N~ 506 (513)
..+ ++ .+.. .|. +.+|+.+++.+|.
T Consensus 342 p~s-v~-~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 342 PSS-VT-KIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred Ccc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence 654 65 5554 444 8899999888763
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=90.50 E-value=0.33 Score=49.02 Aligned_cols=78 Identities=10% Similarity=0.041 Sum_probs=39.5
Q ss_pred eEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcc
Q 010316 402 RIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQ 480 (513)
Q Consensus 402 ~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~ 480 (513)
.|+.+.+..+ ++..-...|.++++|+.++|..+ ++..-. .|.++.+|+.+.|..+ ++..-...|.+|.+|+.+.|.
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 4445555432 33222334566666666666533 332222 2556666666666554 442233456666666666665
Q ss_pred cC
Q 010316 481 NN 482 (513)
Q Consensus 481 ~N 482 (513)
.+
T Consensus 375 ~~ 376 (394)
T 4fs7_A 375 KR 376 (394)
T ss_dssp GG
T ss_pred CC
Confidence 43
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=87.66 E-value=0.7 Score=46.61 Aligned_cols=82 Identities=15% Similarity=0.057 Sum_probs=60.5
Q ss_pred hhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCccEEEcccCcCCCcCCC-CcC-CCC
Q 010316 420 NISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELFLQNNNLTGQIPS-SLI-KPG 496 (513)
Q Consensus 420 ~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~L~~N~l~g~lp~-~l~-l~~ 496 (513)
.+..+.+|+.+.+..+ +...-. .|..+.+|+.++|..+ ++..-...|.+|.+|+.+.+..| ++ .+.. .|. +.+
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~ 367 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCIN 367 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCC
Confidence 5778889999998765 443323 3788999999999754 55333567889999999999876 66 5554 455 899
Q ss_pred cCEEECCCC
Q 010316 497 LNLKTSPGN 505 (513)
Q Consensus 497 L~~L~l~~N 505 (513)
|+.+++..+
T Consensus 368 L~~i~lp~~ 376 (394)
T 4fs7_A 368 LKKVELPKR 376 (394)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEECCC
Confidence 999988654
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=87.24 E-value=2 Score=42.78 Aligned_cols=102 Identities=12% Similarity=0.065 Sum_probs=72.2
Q ss_pred ceeEEEeeecCCcCCcCCChhhhcCcCCCEEEccCCcccccCC-CCCCCCCCCEEEccCccCcccCCccccCCCCccEEE
Q 010316 400 RIRIVTLNLTNMGLSGSLPSNISRLTALSGIWLGNNNLSGTIP-DLSSLMRLETLHLEDNQFSGEIPSSLGKIQSLRELF 478 (513)
Q Consensus 400 l~~l~~L~Ls~n~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p-~l~~l~~L~~L~Ls~N~l~g~lP~~l~~l~~L~~L~ 478 (513)
...|+.+.+..+ ++..-...+.++.+|+.+.+..+ +..... .|..+.+|+.+.+.++.++..-...|.++.+|+.+.
T Consensus 239 ~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~ 316 (379)
T 4h09_A 239 MKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT 316 (379)
T ss_dssp CSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred CccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence 346777777654 54333456788899999998755 332222 378899999999999888744456789999999999
Q ss_pred cccCcCCCcCCC-CcC-CCCcCEEECCCC
Q 010316 479 LQNNNLTGQIPS-SLI-KPGLNLKTSPGN 505 (513)
Q Consensus 479 L~~N~l~g~lp~-~l~-l~~L~~L~l~~N 505 (513)
|..+ ++ .+.. .|. +.+|+.+.+..+
T Consensus 317 lp~~-l~-~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 317 LPTA-LK-TIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred cCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence 9754 55 5554 444 788888777543
No 167
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=84.44 E-value=17 Score=30.89 Aligned_cols=91 Identities=12% Similarity=0.091 Sum_probs=57.3
Q ss_pred CCCcceEEecccCCeEeEEEEEEecCCCCCCCCCeEEEEEeceee-EEEEecccccCCcceEE--EEEEEecCCceeEEE
Q 010316 78 HQKFCYVVPVFRGGKYLVRTTYFYGGVNGRDSPPVFDQMVDGTFW-SEVNTTVDYVHGLASYY--EGVFLAQGKHMSLCI 154 (513)
Q Consensus 78 ~~~~~Y~~~~~~~~~ylvRl~F~y~nyd~~~~~p~F~v~~~~~~~-~~v~~~~~~~~~~~~~~--e~~~~~~~~~~~~cl 154 (513)
+..-.|++.+.+.|.|.|++.+.-+... ....+|++++... .++.+... .+...+. ...+..+...-.|.|
T Consensus 39 g~~v~~~V~v~~aG~Y~l~~ryan~~~~----~~~~~l~VNG~~~~~~v~~p~T--g~w~~w~~~~~~v~L~aG~ntI~l 112 (144)
T 2w47_A 39 GGYIEWNVNAPSSGSYALIFRYANGTTA----NRPMRITVNGNIVKPSMDFVST--GAWTTWNEAGIVANLNQGNNVIRA 112 (144)
T ss_dssp TCEEEEEEEESSSEEEEEEEEEECCSSS----CCCEEEEETTEEEEEEECCCCC--SSTTCCEEEEEEEEECSEEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCCCC----CeEEEEEECCeEeeeEEEecCC--CCCCeeEEEEEEEEECCCccEEEE
Confidence 3455788888888999888887744322 2468899998763 45654221 1111122 233455666667888
Q ss_pred EecCCCCCCCceeeeEeeecC
Q 010316 155 GSNNYTDSDPFISALEFVPLE 175 (513)
Q Consensus 155 ~~~~~~~s~pFIn~iEl~~l~ 175 (513)
.+... ...|-|..|+|.+.+
T Consensus 113 ~~~~~-~g~~niD~i~v~~~~ 132 (144)
T 2w47_A 113 TAIAS-DGGPNVDYLKVFSAN 132 (144)
T ss_dssp EECST-TCCCEEEEEEEEECT
T ss_pred EEeCC-CCCEEEeEEEEEeCC
Confidence 76532 236999999998765
No 168
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=83.68 E-value=15 Score=31.41 Aligned_cols=92 Identities=8% Similarity=0.069 Sum_probs=57.7
Q ss_pred CCCcceEEecccCCeEeEEEEEEecCCCCCCCCCeEEEEEeceeeEEEEecccccCCcceEE--EEEEEecCCceeEEEE
Q 010316 78 HQKFCYVVPVFRGGKYLVRTTYFYGGVNGRDSPPVFDQMVDGTFWSEVNTTVDYVHGLASYY--EGVFLAQGKHMSLCIG 155 (513)
Q Consensus 78 ~~~~~Y~~~~~~~~~ylvRl~F~y~nyd~~~~~p~F~v~~~~~~~~~v~~~~~~~~~~~~~~--e~~~~~~~~~~~~cl~ 155 (513)
+..-.|++.+.+.|.|.|++.+.-+... ....+|++++....++.+... .+...+. .+.+..+...-.|.|.
T Consensus 38 G~~v~~~V~v~~aG~Y~l~~ryang~~~----~r~~~l~VNG~~~~~v~~p~T--g~W~~w~t~~~~v~L~aG~ntI~l~ 111 (145)
T 2w3j_A 38 GASIVWSLSAASAKTYTAQIRFGNGGTS----ARRATVVVNDSQIKTLDFPTN--SNWTQWQTVNVDIPLKAGTNSIKLV 111 (145)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCSSS----CCCEEEEETTEEEEEECCCCC--SCTTSCEEEEEEEEECSEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEEEEEEECCCCC----CeEEEEEECCeEeeEEEecCC--CCCCeeEEEEEEEEECCCceEEEEE
Confidence 3445788888888999888877633322 246899999977666654321 1111122 2334455556677787
Q ss_pred ecCCCCCCCceeeeEeeecCC
Q 010316 156 SNNYTDSDPFISALEFVPLEE 176 (513)
Q Consensus 156 ~~~~~~s~pFIn~iEl~~l~~ 176 (513)
+... ...|-|..|+|.+.+.
T Consensus 112 ~~~~-~g~~niD~i~v~~~~~ 131 (145)
T 2w3j_A 112 AETA-DGLANIDSIRVTGNGI 131 (145)
T ss_dssp ECST-TCCCEEEEEEECSTTE
T ss_pred EecC-cCCEEEEEEEEEcCCC
Confidence 7543 2369999999987654
No 169
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=75.22 E-value=27 Score=29.41 Aligned_cols=88 Identities=11% Similarity=0.103 Sum_probs=54.0
Q ss_pred CCcceEEecccCCeEeEEEEEEecCCCCCCCCCeEEEEEeceee--EEEEecccccCCcceEE--EEEEEecCCceeEEE
Q 010316 79 QKFCYVVPVFRGGKYLVRTTYFYGGVNGRDSPPVFDQMVDGTFW--SEVNTTVDYVHGLASYY--EGVFLAQGKHMSLCI 154 (513)
Q Consensus 79 ~~~~Y~~~~~~~~~ylvRl~F~y~nyd~~~~~p~F~v~~~~~~~--~~v~~~~~~~~~~~~~~--e~~~~~~~~~~~~cl 154 (513)
..-.|++.+.+.|.|.|++.+.-+.-. ....+|++++... .++.+... .+...+. ...+..+...-.|.|
T Consensus 39 ~~v~~~V~v~~aG~Y~l~~ryang~~~----~r~~~l~VNG~~~g~~~v~~p~T--g~W~~w~t~~~~v~L~aG~ntI~l 112 (139)
T 2w87_A 39 AAVVWAIDATSSGRRTLTIRYANGGTA----NRNGSLVINGGSNGNYTVSLPTT--GAWTTWQTATIDVDLVQGNNIVQL 112 (139)
T ss_dssp CEEEEEEEESSCEEEEEEEEEECCSSS----CCCEEEEETTTTTCEEEECCCCC--SSTTCCEEEEEEEEECSEEEEEEE
T ss_pred CEEEEEEECCCCcEEEEEEEEECCCCC----CceEEEEECCEEcceeEEEecCC--CCCCccEEEEEEEEECCCceEEEE
Confidence 345778888788999888877643311 2458899988664 45654321 1111222 333445555667778
Q ss_pred EecCCCCCCCceeeeEeee
Q 010316 155 GSNNYTDSDPFISALEFVP 173 (513)
Q Consensus 155 ~~~~~~~s~pFIn~iEl~~ 173 (513)
.+... +..|-|..|+|.+
T Consensus 113 ~~~~~-~g~~niD~i~v~~ 130 (139)
T 2w87_A 113 SATTA-EGLPNIDSLSVVG 130 (139)
T ss_dssp EESST-TCCCEEEEEEEES
T ss_pred EEcCC-CCCEEEEEEEEec
Confidence 77543 2369999999875
No 170
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=72.69 E-value=38 Score=27.74 Aligned_cols=87 Identities=14% Similarity=0.139 Sum_probs=51.5
Q ss_pred CCCcceEEecccCCeEeEEEEEEecCCCCCCCCCeEEEEEeceeeE-EEEecccccCCcceEEE--EEEEecCCceeEEE
Q 010316 78 HQKFCYVVPVFRGGKYLVRTTYFYGGVNGRDSPPVFDQMVDGTFWS-EVNTTVDYVHGLASYYE--GVFLAQGKHMSLCI 154 (513)
Q Consensus 78 ~~~~~Y~~~~~~~~~ylvRl~F~y~nyd~~~~~p~F~v~~~~~~~~-~v~~~~~~~~~~~~~~e--~~~~~~~~~~~~cl 154 (513)
+..-.|++.+.+.|.|.|++++.-+.. ....++|++++.... .+.+... .+...+.+ ..+..+...-.|.|
T Consensus 38 g~~v~~~V~v~~aG~Y~l~~rya~~~~----~~~~~~l~VnG~~~~~~v~~p~t--g~W~~w~~~~~~v~L~aG~ntI~l 111 (127)
T 2vzp_A 38 GSSVEWTVTVPSAGTYDVVVRYANGTT----TSRPLDFSVNGSISASGVAFGST--GTWPAWTTKTVRVTLAAGVNKIKA 111 (127)
T ss_dssp TCEEEEEEEESSSEEEEEEEEEECCSS----SCCCEEEEETTEEEEEEECCCCC--SSTTCCEEEEEEEEECSEEEEEEE
T ss_pred CCEEEEEEEcCCCCEEEEEEEEEcCCC----CCeEEEEEECCEEeeeEEEecCC--CCCCceEEEEEEEEECCCceEEEE
Confidence 445688888888999998888874431 225689999987653 3554221 11112222 33444555666777
Q ss_pred EecCCCCCCCceeeeEe
Q 010316 155 GSNNYTDSDPFISALEF 171 (513)
Q Consensus 155 ~~~~~~~s~pFIn~iEl 171 (513)
.+... +..|-|..|+|
T Consensus 112 ~~~~~-~~~~niD~i~v 127 (127)
T 2vzp_A 112 VATTA-NGGPNVDKITL 127 (127)
T ss_dssp EECST-TCCCEEEEEEC
T ss_pred EEeCC-CCCeEEEEEEC
Confidence 76432 22577777764
No 171
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=63.80 E-value=69 Score=27.49 Aligned_cols=91 Identities=14% Similarity=0.072 Sum_probs=50.2
Q ss_pred ceE-EecccCCeEeEEEEEEecCC------CCCCCCCeEEEEEeceeeEEEEecccccCCcceE--EEEEEEecCCceeE
Q 010316 82 CYV-VPVFRGGKYLVRTTYFYGGV------NGRDSPPVFDQMVDGTFWSEVNTTVDYVHGLASY--YEGVFLAQGKHMSL 152 (513)
Q Consensus 82 ~Y~-~~~~~~~~ylvRl~F~y~ny------d~~~~~p~F~v~~~~~~~~~v~~~~~~~~~~~~~--~e~~~~~~~~~~~~ 152 (513)
.++ +.+.+.|+|.|++.|.-|.. .........+|++++..-..+.+... .+...+ ..+.+..+.....|
T Consensus 50 tf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~fp~T--g~W~~~~~~tv~V~L~aG~NtI 127 (156)
T 2wz8_A 50 QFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHYFFNT--RGWNTYRTDIIDVYLNAGNNTI 127 (156)
T ss_dssp EEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEEECCC--SSTTCCEEEEEEEEECSEEEEE
T ss_pred EEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEEeCCC--CCCCcceEEEEEEEECCCceEE
Confidence 455 66667899998888874432 11111245889998866445554321 111122 23344455556666
Q ss_pred EEEecCCCCCCCceeeeEeeec
Q 010316 153 CIGSNNYTDSDPFISALEFVPL 174 (513)
Q Consensus 153 cl~~~~~~~s~pFIn~iEl~~l 174 (513)
.|......+-.|-|-.|+|.+.
T Consensus 128 ~~~~~~~~~~~pdiD~i~v~~~ 149 (156)
T 2wz8_A 128 RFYNGTSGSYAPNIDKIAIAAL 149 (156)
T ss_dssp EEECCSTTCBCCEEEEEEEEC-
T ss_pred EEEecCCCCCCcEEEEEEEecc
Confidence 6665311223588888888654
No 172
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=30.72 E-value=33 Score=28.15 Aligned_cols=39 Identities=21% Similarity=0.432 Sum_probs=29.2
Q ss_pred EEEcCCCCCCCcceEEEEEeecCCCCCCCceEEEEEEECCeec
Q 010316 259 ELTWPPVFLSSSRYYIALYFADNPSSSREGTRVFDIIINGIPY 301 (513)
Q Consensus 259 ~~tw~~~~~~~~~y~v~lhFae~~~~~~~~~R~F~i~in~~~~ 301 (513)
.++|...++..-.|-+.++++.-. ...|.++|+|||...
T Consensus 40 ~v~~~V~v~~aG~Y~l~~rya~~~----~~~~~~~l~VnG~~~ 78 (127)
T 2vzp_A 40 SVEWTVTVPSAGTYDVVVRYANGT----TTSRPLDFSVNGSIS 78 (127)
T ss_dssp EEEEEEEESSSEEEEEEEEEECCS----SSCCCEEEEETTEEE
T ss_pred EEEEEEEcCCCCEEEEEEEEEcCC----CCCeEEEEEECCEEe
Confidence 456666666678899999998722 246899999999864
No 173
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=30.64 E-value=27 Score=29.52 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=28.4
Q ss_pred EEEcCCCCCCCcceEEEEEeecCCCCCCCceEEEEEEECCee
Q 010316 259 ELTWPPVFLSSSRYYIALYFADNPSSSREGTRVFDIIINGIP 300 (513)
Q Consensus 259 ~~tw~~~~~~~~~y~v~lhFae~~~~~~~~~R~F~i~in~~~ 300 (513)
.++|...++..-.|-+.+.++.- ....|.++|+|||..
T Consensus 41 ~v~~~V~v~~aG~Y~l~~ryan~----~~~~~~~~l~VNG~~ 78 (144)
T 2w47_A 41 YIEWNVNAPSSGSYALIFRYANG----TTANRPMRITVNGNI 78 (144)
T ss_dssp EEEEEEEESSSEEEEEEEEEECC----SSSCCCEEEEETTEE
T ss_pred EEEEEEECCCCcEEEEEEEEECC----CCCCeEEEEEECCeE
Confidence 45666666667789999999862 124799999999976
No 174
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=29.53 E-value=34 Score=29.06 Aligned_cols=39 Identities=15% Similarity=0.350 Sum_probs=28.9
Q ss_pred EEEcCCCCCCCcceEEEEEeecCCCCCCCceEEEEEEECCeec
Q 010316 259 ELTWPPVFLSSSRYYIALYFADNPSSSREGTRVFDIIINGIPY 301 (513)
Q Consensus 259 ~~tw~~~~~~~~~y~v~lhFae~~~~~~~~~R~F~i~in~~~~ 301 (513)
.++|...++..-.|-+.+.+|.- ....|.++|+|||...
T Consensus 40 ~v~~~V~v~~aG~Y~l~~ryang----~~~~r~~~l~VNG~~~ 78 (145)
T 2w3j_A 40 SIVWSLSAASAKTYTAQIRFGNG----GTSARRATVVVNDSQI 78 (145)
T ss_dssp EEEEEEEESSCEEEEEEEEEECC----SSSCCCEEEEETTEEE
T ss_pred EEEEEEECCCCeEEEEEEEEECC----CCCCeEEEEEECCeEe
Confidence 35565566667889999999841 2247999999999764
No 175
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=22.70 E-value=4.5e+02 Score=25.58 Aligned_cols=78 Identities=19% Similarity=0.124 Sum_probs=40.3
Q ss_pred ceEEecccCCeEeEEEEEEecCCCCCCCCCeEEEEEeceeeEEEEecccccCCcceEEEEEEEecCCceeEEEEecCC-C
Q 010316 82 CYVVPVFRGGKYLVRTTYFYGGVNGRDSPPVFDQMVDGTFWSEVNTTVDYVHGLASYYEGVFLAQGKHMSLCIGSNNY-T 160 (513)
Q Consensus 82 ~Y~~~~~~~~~ylvRl~F~y~nyd~~~~~p~F~v~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~~~~~cl~~~~~-~ 160 (513)
.+++.+ +.|.|.|.+.+--+ +.-.|.+.+. ..+. . ..+. ++|..+.++.....+.|..+.. .
T Consensus 79 ~f~v~~-~~g~Y~v~v~~g~~--------~~~~v~~e~~--~~~~--~--~~g~--~~~~~~~v~~~~g~~~l~~~~~~~ 141 (375)
T 2o14_A 79 TFNVDL-PNGLYEVKVTLGNT--------ARASVAAEGV--FQVI--N--MTGD--GAEDTFQIPVTDGQLNLLVTEGKA 141 (375)
T ss_dssp CEEEEC-CSEEEEEEEEESSC--------SEEEEEETTE--EEEE--E--EEST--TCEEEEEEEECSSEEEEEEEESST
T ss_pred EEEEEc-CCCceEEEEEecCC--------cceEEEEcce--EEEE--e--cCCC--cEEEEEEEEeeCCeEEEeeeeccC
Confidence 344444 57999888887621 2334444443 1122 1 1111 2344444444445555553311 1
Q ss_pred CCCCceeeeEeeecCC
Q 010316 161 DSDPFISALEFVPLEE 176 (513)
Q Consensus 161 ~s~pFIn~iEl~~l~~ 176 (513)
+..+++++||+.+.+.
T Consensus 142 g~~~~l~~i~v~~~~~ 157 (375)
T 2o14_A 142 GTAFTLSALKIKKLSD 157 (375)
T ss_dssp TSCCEEEEEEEEEEES
T ss_pred CCCcccceEEEeccCC
Confidence 2358999999998654
No 176
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=22.40 E-value=67 Score=27.59 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=28.9
Q ss_pred EEEcC-CCCCCCcceEEEEEeecCCCC------CCCceEEEEEEECCee
Q 010316 259 ELTWP-PVFLSSSRYYIALYFADNPSS------SREGTRVFDIIINGIP 300 (513)
Q Consensus 259 ~~tw~-~~~~~~~~y~v~lhFae~~~~------~~~~~R~F~i~in~~~ 300 (513)
.++|. ..++..-.|.|.++|+.-... .....|...|+|||..
T Consensus 48 ~vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~ 96 (156)
T 2wz8_A 48 YLQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGP 96 (156)
T ss_dssp CEEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCC
T ss_pred EEEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCce
Confidence 45565 556667899999999873210 0013799999999975
No 177
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A*
Probab=22.07 E-value=3.6e+02 Score=22.82 Aligned_cols=87 Identities=10% Similarity=0.130 Sum_probs=49.5
Q ss_pred CCCcceEEecccCCeEeEEEEEEecCCCCCCCCCeEEEEEece----eeEEEEecccccCCcceE--EEE-EEEecCCce
Q 010316 78 HQKFCYVVPVFRGGKYLVRTTYFYGGVNGRDSPPVFDQMVDGT----FWSEVNTTVDYVHGLASY--YEG-VFLAQGKHM 150 (513)
Q Consensus 78 ~~~~~Y~~~~~~~~~ylvRl~F~y~nyd~~~~~p~F~v~~~~~----~~~~v~~~~~~~~~~~~~--~e~-~~~~~~~~~ 150 (513)
+.--.|++.+.+.|.|-|.+....+. .+ -.+.+.+++. ...++..... +...+ +.. -+..+...-
T Consensus 66 Gdwl~y~V~v~~aG~Y~i~~rvas~~-~g----~~i~l~vdg~~~~~~~g~~~vp~t---GW~~w~t~t~~~v~L~aG~h 137 (160)
T 2cdp_A 66 GDYADYTIAVAQAGNYTISYQAGSGV-TG----GSIEFLVNENGSWASKTVTAVPNQ---GWDNFQPLNGGSVYLSAGTH 137 (160)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEEBSS-SS----CEEEEEEECSSSEEEEEEEECCBS---CTTCCEEEEEEEEEECSEEE
T ss_pred CCEEEEEEEcCCCcEEEEEEEEEcCC-CC----ceEEEEECCCCCceeeeEEEcCCC---CCceeEEeeeeEEEeCCCeE
Confidence 34568999988889998888877443 22 3688888874 2233332111 11111 122 234455566
Q ss_pred eEEEEecCCCCCCCceeeeEee
Q 010316 151 SLCIGSNNYTDSDPFISALEFV 172 (513)
Q Consensus 151 ~~cl~~~~~~~s~pFIn~iEl~ 172 (513)
.|.|.+++..+..-=|+-|++.
T Consensus 138 tL~l~~~g~~~~~~Nld~~~f~ 159 (160)
T 2cdp_A 138 QVRLHGAGSNNWQWNLDKFTLS 159 (160)
T ss_dssp EEEEEECSSSSBCCEEEEEEEE
T ss_pred EEEEEEECCCCCcEEEEEEEEE
Confidence 7888887642223456666664
Done!