Query 010317
Match_columns 513
No_of_seqs 189 out of 2597
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 04:10:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.4E-51 4.7E-56 424.1 33.0 438 27-494 7-481 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 4.3E-33 1.5E-37 282.8 14.8 399 27-474 23-432 (451)
3 3o7q_A L-fucose-proton symport 100.0 3.2E-30 1.1E-34 260.7 29.1 368 34-469 28-426 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.9 8.3E-27 2.8E-31 239.3 22.7 397 55-482 37-478 (491)
5 2gfp_A EMRD, multidrug resista 99.9 8.4E-27 2.9E-31 230.7 8.6 176 36-214 4-180 (375)
6 2cfq_A Lactose permease; trans 99.9 1.5E-23 5.1E-28 210.4 13.2 365 57-484 33-408 (417)
7 2xut_A Proton/peptide symporte 99.9 2.2E-22 7.6E-27 208.1 20.9 150 55-207 36-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.1 4.7E-10 1.6E-14 112.9 11.4 152 52-206 272-430 (451)
9 4gc0_A D-xylose-proton symport 99.0 1.7E-09 5.7E-14 110.2 10.1 159 54-213 299-467 (491)
10 2cfq_A Lactose permease; trans 98.9 4.8E-10 1.7E-14 111.8 5.1 146 66-214 258-405 (417)
11 3o7q_A L-fucose-proton symport 98.9 1.3E-09 4.4E-14 109.3 8.1 141 56-202 283-425 (438)
12 4aps_A DI-OR tripeptide H+ sym 98.8 1E-07 3.5E-12 97.0 15.2 163 304-478 28-199 (491)
13 2gfp_A EMRD, multidrug resista 98.7 1.8E-08 6.2E-13 98.7 8.3 166 305-482 16-181 (375)
14 2xut_A Proton/peptide symporte 98.6 4.7E-07 1.6E-11 92.9 13.7 160 304-474 27-197 (524)
15 2g9p_A Antimicrobial peptide l 26.5 10 0.00035 19.2 -0.4 13 87-99 3-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.4e-51 Score=424.08 Aligned_cols=438 Identities=29% Similarity=0.542 Sum_probs=339.8
Q ss_pred chHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCC--------CchhHHHHHHHHHHHHHHHHhhccccccccCchH
Q 010317 27 NKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEI--------TEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRY 98 (513)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~ 98 (513)
+++.+.+++++.++.+++|||.+.++.+.|.++++++. ++++.+++.+++.+|..+|++++|+++||+|||+
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 56778888888999999999999999999999888743 3456789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh------------------cCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccch
Q 010317 99 TIVVAAATFLVGALAMGL------------------APNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSL 160 (513)
Q Consensus 99 ~~~~~~~~~~i~~~~~~~------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~ 160 (513)
++.++.+++.++++++++ ++|+++++++|+++|++.|+..+..+.|++|+.|+++|++..++
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 999999999999999994 78999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCC-----CCcchHHHHHhhhHHHHHHHHHHhccCCCchhHHhcCCHHHHHHHHHHhcCC
Q 010317 161 PEVFIVLGILSGYVFNYALSGLP-----GNINWRIMLGLAAVPAAVIGVGVLIMPESPRWLVMKSRYDEAKRVLLKVSDT 235 (513)
Q Consensus 161 ~~~~~~~G~~~~~~~~~~~~~~~-----~~~~Wr~~~~~~~~~~~i~~~~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~ 235 (513)
.+.+...|.+.+...+....... ...+||+.+.+..++.++..+..+++||||||+..|+|.||+.+.+++....
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 99999999998888776654321 2357999999999999988888999999999999999999999998877543
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHH
Q 010317 236 EQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAV 315 (513)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 315 (513)
+...++..+.......+.. ...+ ..... +++.........+.+..+.+.+.+|.|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~------------------~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (491)
T 4gc0_A 247 TLATQAVQEIKHSLDHGRK------------------TGGR-LLMFG----VGVIVIGVMLSIFQQFVGINVVLYYAPEV 303 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------------HTTH-HHHSC----CTHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhh------------------hhhH-HHHhc----ccHHHHHHHHHHHHHHhhhhHHHhcchHH
Confidence 3222221111111100000 0001 11111 12233344455667778888889999998
Q ss_pred HHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHH
Q 010317 316 FKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAV 395 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (513)
.+..+.... .........++...++.++++++.||+|||+.++.+...+.++.+.++..... ...... .+...
T Consensus 304 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~---~~~~~ 376 (491)
T 4gc0_A 304 FKTLGASTD-IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT---QAPGIV---ALLSM 376 (491)
T ss_dssp HHHSSCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT---TCCHHH---HHHHH
T ss_pred HHhcCCCcc-chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc---ccchHH---HHHHH
Confidence 887664433 33345666778889999999999999999999988877777666655543321 111221 22333
Q ss_pred HHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH------hcccchhHHHHHHHHHHHH
Q 010317 396 CAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISH------RLSFGGTFFLLAGITTVGT 469 (513)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 469 (513)
..+...+..+.+++.|+|++|+||++.|+++.|+++.++++++.+.+..++.+.+ ..+....|++++++++++.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 456 (491)
T 4gc0_A 377 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 456 (491)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 4444566777888889999999999999999999999999988888877765432 2345567889999999999
Q ss_pred HhhheecccCCCCCHHHHHhHhcCC
Q 010317 470 IFFYVFLPETKGKTLEEMQALFGGD 494 (513)
Q Consensus 470 ~~~~~~~pet~~~~~~e~~~~~~~~ 494 (513)
+++++++||||||++||+++.++++
T Consensus 457 i~~~~~~PETkg~tLeei~~~f~~~ 481 (491)
T 4gc0_A 457 LFMWKFVPETKGKTLEELEALWEPE 481 (491)
T ss_dssp HHHHHHCCCCTTCCHHHHGGGTC--
T ss_pred HHHHheecCCCCCCHHHHHHHhCCC
Confidence 9888999999999999999988554
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=4.3e-33 Score=282.83 Aligned_cols=399 Identities=13% Similarity=0.078 Sum_probs=275.2
Q ss_pred chHHHHHHHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHH
Q 010317 27 NKYAFICALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAAT 106 (513)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~ 106 (513)
++.++.......+..+..+++...+++..|.+.+++ .++++.+++.+++.++..++++++|+++||+|||+++.++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 445566667777888889999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCC
Q 010317 107 FLVGALAMGL----APNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGL 182 (513)
Q Consensus 107 ~~i~~~~~~~----~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 182 (513)
++++.+++++ +++++.++++|++.|++.+...+....++.|++|+++|+++.++.+....+|.++++.++..+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-- 179 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM-- 179 (451)
T ss_dssp HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH--
T ss_pred HHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999 9999999999999999999999999999999999999999999999999999888887764432
Q ss_pred CCCcc-hHHHHHhhhHHHHHHHH-HHhccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCC
Q 010317 183 PGNIN-WRIMLGLAAVPAAVIGV-GVLIMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDD 260 (513)
Q Consensus 183 ~~~~~-Wr~~~~~~~~~~~i~~~-~~~~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (513)
...+ ||+.|++.++..++..+ ..+++||+|+....+.+.++ . .+.+ ++ . ++ ++ +
T Consensus 180 -~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~--~~--~--~~-~~-------~ 235 (451)
T 1pw4_A 180 -AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY--------K-NDYP--DD--Y--NE-KA-------E 235 (451)
T ss_dssp -HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT--------C-CC------------------------
T ss_pred -HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh--------c-cccc--cc--c--hh-hh-------h
Confidence 2346 99999988877665444 45778999875321111000 0 0000 00 0 00 00 0
Q ss_pred CCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHh-CCCCCchhHHHHHHHHhHHHH
Q 010317 261 DQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKG-AGIHRKPVLFGINVVMGLAKT 339 (513)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~ 339 (513)
++ ....+..+++.++ ++.++...+..+......+....+.|.++++ .+.+.. .........+++..
T Consensus 236 ~~-----~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~ 302 (451)
T 1pw4_A 236 QE-----LTAKQIFMQYVLP-------NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD-KSSWAYFLYEYAGI 302 (451)
T ss_dssp --------CCTHHHHHHTSS-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHH-HHHHHHHHHHHHHH
T ss_pred cc-----cccccchHHHHHc-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHH
Confidence 00 0000001122221 1112222233333444456667788888876 343322 22334555677888
Q ss_pred HHHHHHHHHhhcc--CChhHHHhhhHHHH-HHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecc
Q 010317 340 FFVVLSALHLDKF--GRRPLLLLGSSGMV-GSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSE 416 (513)
Q Consensus 340 ~~~~~~~~~~d~~--grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 416 (513)
++.++.+++.||+ |||+.+..+..... .+.+++ ......+.+....... ..+++..+..+..+.+..|
T Consensus 303 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~ 373 (451)
T 1pw4_A 303 PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY-----WMNPAGNPTVDMICMI----VIGFLIYGPVMLIGLHALE 373 (451)
T ss_dssp HHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHT-----TSCCTTCHHHHHHHHH----HHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH-----HHhcccCHHHHHHHHH----HHHHHHhchHHHHHHHHHH
Confidence 9999999999999 99988766543322 221111 1111112222111111 1122222223344678899
Q ss_pred cCChhhHhhHHHHHHHHHHH-HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhhe
Q 010317 417 IFPLRLRAQGSALAISVNRL-VSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYV 474 (513)
Q Consensus 417 l~P~~~R~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (513)
.+|++.|+++.|+.+.+.++ ++.+.+.....+.+..++...|++.+++.+++.+...+
T Consensus 374 ~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 374 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 88888888888888778888888888877777665543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.97 E-value=3.2e-30 Score=260.66 Aligned_cols=368 Identities=12% Similarity=0.094 Sum_probs=254.4
Q ss_pred HHHHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHH
Q 010317 34 ALLASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALA 113 (513)
Q Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~ 113 (513)
..+..+..+..+++....++..|.+++++|+++++.+++.+++.+++.++++++|+++||+|||+++.++.++++++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 107 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34445556777888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred H---HhcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhc-CCCCC----
Q 010317 114 M---GLAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALS-GLPGN---- 185 (513)
Q Consensus 114 ~---~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~---- 185 (513)
+ +++++++.++++|++.|++.|...+....+++|++|+++|+++.+..+....+|..+++.++..+. ...+.
T Consensus 108 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 187 (438)
T 3o7q_A 108 FWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQD 187 (438)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHH
T ss_pred HHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 9 899999999999999999999999999999999999999999999999999999999988766554 32211
Q ss_pred ------------------cchHHHHHhhhHHHHHHHHHHh--ccCCCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHH
Q 010317 186 ------------------INWRIMLGLAAVPAAVIGVGVL--IMPESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDD 245 (513)
Q Consensus 186 ------------------~~Wr~~~~~~~~~~~i~~~~~~--~lpEsp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 245 (513)
.+||+.|++.++..++..+..+ ..||+++.. ++ + +++.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~-~----------~~~~-------- 245 (438)
T 3o7q_A 188 VLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HS-D----------AKQG-------- 245 (438)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CC-C----------SSTT--------
T ss_pred ccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---cc-c----------cccc--------
Confidence 0199999877766555444333 346665310 00 0 0000
Q ss_pred HHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHH-HHhC-CCCC
Q 010317 246 MIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAV-FKGA-GIHR 323 (513)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~-~~~~ 323 (513)
.....++++++. +..+... ...+...........+.|.+ +++. +.+.
T Consensus 246 ------------------------~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 294 (438)
T 3o7q_A 246 ------------------------SFSASLSRLARI--RHWRWAV-----LAQFCYVGAQTACWSYLIRYAVEEIPGMTA 294 (438)
T ss_dssp ------------------------SHHHHHHHHTTC--SHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred ------------------------chhhhHHHHHhC--hHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhccCCcch
Confidence 000112222221 1222211 11222223344556778888 7665 4333
Q ss_pred chhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHh
Q 010317 324 KPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFS 403 (513)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (513)
. ..........++..++.++.+++.||+|||+.+..+.....++.+++... ..... .... .. ..++.
T Consensus 295 ~-~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~---~~-~g~~~ 361 (438)
T 3o7q_A 295 G-FAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------GGHVG-LIAL---TL-CSAFM 361 (438)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------CHHHH-HHHH---HH-HHHHH
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-------CCcHH-HHHH---HH-HHHHH
Confidence 2 22234455677888899999999999999999887765554443333221 11111 1111 11 12222
Q ss_pred ccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHH
Q 010317 404 IGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLS-FGGTFFLLAGITTVGT 469 (513)
Q Consensus 404 ~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 469 (513)
....+..+.+..|.+|++ |+.+.++.. ++++++.+.+.....+.+..+ +...|++.+++.++..
T Consensus 362 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 362 SIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp TTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 333456677888999988 888888876 777777777777777777766 7777776655544443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=8.3e-27 Score=239.33 Aligned_cols=397 Identities=14% Similarity=0.062 Sum_probs=227.5
Q ss_pred hHHHHhh-----hCCCchhHHHHHHHHHHHHHHHHhhccccccc-cCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Q 010317 55 VLYIKED-----LEITEVQVEVLVGILNVFSLIGSLASGKTSDY-IGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRM 128 (513)
Q Consensus 55 ~~~~~~~-----~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr-~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~ 128 (513)
.++++++ +|.+..+.+++.+++.++..++++++|+++|| +|||+++.++.++..++.+++++++|++.++++|+
T Consensus 37 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (491)
T 4aps_A 37 LYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSII 116 (491)
T ss_dssp HHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHH
T ss_pred HHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3455555 99999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred HhhhhcccccccccceeeccCCCcc--cccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHH
Q 010317 129 IAGIGVGYSLMISPVYTAEISPTMK--RGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGV 206 (513)
Q Consensus 129 l~G~~~g~~~~~~~~~~~e~~p~~~--R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~ 206 (513)
+.|++.|...+....+++|++|+++ |+...+..+....+|..+++.++..+. ...+||+.|++.++..++..+..
T Consensus 117 l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 117 LIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ---EAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 666777778888888888877765543 23589999998776655544433
Q ss_pred hcc-CCCc----hhHHhcCCHHHHHHHHHHh-----------------cCChHHHHHHH---HHH----HHHHhhcCCCC
Q 010317 207 LIM-PESP----RWLVMKSRYDEAKRVLLKV-----------------SDTEQEAKERL---DDM----IKAAKESSPSG 257 (513)
Q Consensus 207 ~~l-pEsp----~~l~~~~~~~~a~~~~~~~-----------------~~~~~~~~~~~---~~~----~~~~~~~~~~~ 257 (513)
++. |+.. +-...+.+.++.++..+.. ...+.+..... ... ..........
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 272 (491)
T 4aps_A 194 YFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSV- 272 (491)
T ss_dssp HHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcc-
Confidence 322 2110 0000111222322222210 00000000000 000 0000000000
Q ss_pred CCCCCCCCCCCccCcchhhhhhcCCChhHHHHHHHHHHHHHHhhhccchhhhccHHHHHHhC-CCCCchhHHHHHHHHhH
Q 010317 258 PDDDQGPPKGNFTGEGVWKDLILKPTPAVRRMLIAAVGINFFMQASGNDAVIYYTPAVFKGA-GIHRKPVLFGINVVMGL 336 (513)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~ 336 (513)
...+. ..+ +..+....... .+...........+.|.+..+. +.+..... .......+
T Consensus 273 ----~~~~~-------~~~-------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 330 (491)
T 4aps_A 273 ----KVTST-------EHL-------RVVSYIPLFIA---AVLFWAIEEQGSVVLATFAAERVDSSWFPVS-WFQSLNPL 330 (491)
T ss_dssp ---------------------------CTTHHHHHHH---HHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG-GGTTHHHH
T ss_pred ----cccHH-------HHH-------HHHHHHHHHHH---HHHHHHHHhhccHHHHHHHHHHhccCccCHH-HHhccchH
Confidence 00000 000 00010111111 1111111223334555555542 22211111 12344455
Q ss_pred HHHHHHHHHHHHhhccCChhHHH-----hhhHHHHHHHHHHHHHhhccC--CCCchhHHHHHHHHHHHHHHHHhccccce
Q 010317 337 AKTFFVVLSALHLDKFGRRPLLL-----LGSSGMVGSLLLLGIGSKILE--GSTPTVVVVLCIIAVCAFVSFFSIGLGPI 409 (513)
Q Consensus 337 ~~~~~~~~~~~~~d~~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (513)
...++..+.+++.||+|||+... .+...+..+.++++....... .....+...... ...++......+.
T Consensus 331 ~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~g~~~~~~~~~ 406 (491)
T 4aps_A 331 FIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSW----ALVILGEMLISPV 406 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHH----HHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHH----HHHHHHHHHHhHH
Confidence 66677788899999999986543 333333333333322211100 011112111111 1112222223455
Q ss_pred eeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhhheecccCCCC
Q 010317 410 TWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGK 482 (513)
Q Consensus 410 ~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~ 482 (513)
.+.+..|.+|++.|+++.|+.+...++++.+.+...+... ..++...+.+++++++++.+..+++.++++++
T Consensus 407 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 407 GLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYN-AKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGG-GSSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999987777666544433 33556677777777777777766666666544
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.93 E-value=8.4e-27 Score=230.68 Aligned_cols=176 Identities=20% Similarity=0.239 Sum_probs=156.3
Q ss_pred HHHHHHHHHhhcccccchhhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHH
Q 010317 36 LASINSILLGYDIGVMSGAVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMG 115 (513)
Q Consensus 36 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~ 115 (513)
+..+..+..+++...+++..|.+.+++|.++++.+++.+++.++..+++++.|+++||+|||+++..+.++..++..+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence 34455666777888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhh
Q 010317 116 LAPNYPFLIVGRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLA 195 (513)
Q Consensus 116 ~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~ 195 (513)
++++++.+++.|++.|++.+...+....++.|+.|+++|++..+..+....+|..+++.++..+. +..+||+.|++.
T Consensus 84 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~~~~~~~~~~~~ 160 (375)
T 2gfp_A 84 TTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD---TMWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS---CHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---HhccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888776543 345899999988
Q ss_pred hHHHHHHHH-HHhccCCCch
Q 010317 196 AVPAAVIGV-GVLIMPESPR 214 (513)
Q Consensus 196 ~~~~~i~~~-~~~~lpEsp~ 214 (513)
++..++..+ ..+.+||+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 161 LVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHHCcccCC
Confidence 877766655 4567788864
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.90 E-value=1.5e-23 Score=210.36 Aligned_cols=365 Identities=15% Similarity=0.161 Sum_probs=198.8
Q ss_pred HHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHH---HHhcCcH-HHHHHHHHHhhh
Q 010317 57 YIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALA---MGLAPNY-PFLIVGRMIAGI 132 (513)
Q Consensus 57 ~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~---~~~~~~~-~~l~~~R~l~G~ 132 (513)
++++++|+++.+.+++.+++.+++.++++++|+++||+|||+++.++..++.++... .++.+.. ..+...|.+.|+
T Consensus 33 ~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (417)
T 2cfq_A 33 WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI 112 (417)
T ss_dssp HHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999999999999999999999999999999998887653221 1222211 113345666665
Q ss_pred hcccccccccceeeccCCC--cccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHHHhccC
Q 010317 133 GVGYSLMISPVYTAEISPT--MKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVGVLIMP 210 (513)
Q Consensus 133 ~~g~~~~~~~~~~~e~~p~--~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~~~~lp 210 (513)
+.|...+.......++.++ ++|+...+.......+|..+++.++..+. ..+||+.|++.+++.++..+..++.|
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~----~~~~~~~f~~~~~~~~~~~~~~~~~~ 188 (417)
T 2cfq_A 113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF----TINNQFVFWLGSGCALILAVLLFFAK 188 (417)
T ss_dssp STTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH----HHCSHHHHTTTTTTTTTHHHHSCSSC
T ss_pred HHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH----HhchhHHHHHHHHHHHHHHHHHHHcC
Confidence 5554433333333334332 34555444444344455555555443332 13799999988777655544444444
Q ss_pred -CCchhHHhcCCHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCcchhhhhhcCCChhHHHH
Q 010317 211 -ESPRWLVMKSRYDEAKRVLLKVSDTEQEAKERLDDMIKAAKESSPSGPDDDQGPPKGNFTGEGVWKDLILKPTPAVRRM 289 (513)
Q Consensus 211 -Esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (513)
|+|+. .+.++ + .+ ++.+ + .....++++++ .+..+..
T Consensus 189 ~~~~~~----~~~~~------------~------------------~~-~~~~---~---~~~~~~~~~~~--~~~~~~~ 225 (417)
T 2cfq_A 189 TDAPSS----ATVAN------------A------------------VG-ANHS---A---FSLKLALELFR--QPKLWFL 225 (417)
T ss_dssp CCCSCS----SCSSS------------S------------------SS-SCCC---C---CCHHHHHHHTT--CHHHHHH
T ss_pred cccccc----ccccc------------c------------------cc-cccc---c---ccHHHHHHHhc--CCchhhH
Confidence 44320 00000 0 00 0000 0 00011222222 1222211
Q ss_pred HHHHHHHHHHhhhccchhhhccHHHHHHhCCCCC--chhH-HHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHH
Q 010317 290 LIAAVGINFFMQASGNDAVIYYTPAVFKGAGIHR--KPVL-FGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMV 366 (513)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~ 366 (513)
.+.. +...........+.|.++.+.-... .... .....+..+...++.++.+++.||+|||+.+..+.....
T Consensus 226 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 226 SLYV-----IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMS 300 (417)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 1111 1111111222234565554321110 0111 122334455677788999999999999998876654443
Q ss_pred HHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHH-HHHHHHHHHHHHHHH
Q 010317 367 GSLLLLGIGSKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALA-ISVNRLVSGVISMTF 445 (513)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~-~~~~~~~~~~~~~~~ 445 (513)
...+.++ . ....+...............+ .+..+.+++|.+|++.|+++.++. +..+++++.+.+...
T Consensus 301 ~~~~~~~-----~--~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~ 369 (417)
T 2cfq_A 301 VRIIGSS-----F--ATSALEVVILKTLHMFEVPFL----LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369 (417)
T ss_dssp HHHHHHT-----T--CCSHHHHHHHTTHHHHHHHHH----HHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHH
T ss_pred HHHHHHH-----H--hccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhH
Confidence 3322221 1 111111111111111111111 112356889999999999999985 667777666777666
Q ss_pred HHHHHhcccchhHHHHHHHHHHHHHhhheecccCCCCCH
Q 010317 446 LSISHRLSFGGTFFLLAGITTVGTIFFYVFLPETKGKTL 484 (513)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~ 484 (513)
+.+.+..++...|.+.+++.+++.+..++..||+++.++
T Consensus 370 G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 370 GNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 666666666677888888888877776666777665543
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.89 E-value=2.2e-22 Score=208.08 Aligned_cols=150 Identities=13% Similarity=0.107 Sum_probs=130.2
Q ss_pred hHHHHhhhC------CCchhHHHHHHHHHHHHHHHHhhcccccccc-CchHHHHHHHHHHHHHHHHHHhcC-cHHHHHHH
Q 010317 55 VLYIKEDLE------ITEVQVEVLVGILNVFSLIGSLASGKTSDYI-GRRYTIVVAAATFLVGALAMGLAP-NYPFLIVG 126 (513)
Q Consensus 55 ~~~~~~~~~------~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~-GRr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~ 126 (513)
.+++++++| .+..+.+++.+++.++..++++++|+++||+ |||+++.++.+++.++.++.++++ +++.++++
T Consensus 36 ~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (524)
T 2xut_A 36 TPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTG 115 (524)
T ss_dssp HHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 346788899 9999999999999999999999999999999 999999999999999999999999 99999999
Q ss_pred HHHhhhhcccccccccceeeccCCCcccccccch---hhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHH
Q 010317 127 RMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSL---PEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIG 203 (513)
Q Consensus 127 R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~---~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~ 203 (513)
|++.|++.+...+....++.|++|+++|++..+. .+....+|..+++.+...+. +..+||+.|++.++..++..
T Consensus 116 ~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~---~~~g~~~~f~~~~~~~~~~~ 192 (524)
T 2xut_A 116 LFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL---KNFGAAVAFGIPGVLMFVAT 192 (524)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH---HTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999877776 66777788888777654443 24589999998877766554
Q ss_pred HHHh
Q 010317 204 VGVL 207 (513)
Q Consensus 204 ~~~~ 207 (513)
+..+
T Consensus 193 ~~~~ 196 (524)
T 2xut_A 193 VFFW 196 (524)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.07 E-value=4.7e-10 Score=112.88 Aligned_cols=152 Identities=14% Similarity=0.093 Sum_probs=121.8
Q ss_pred chhhHH-HHhhhCCCchhHHHHHHHHHHHHHHHHhhcccccccc--CchHHHHHHHHHHH-HHHHHHHhc--CcHHHHHH
Q 010317 52 SGAVLY-IKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYI--GRRYTIVVAAATFL-VGALAMGLA--PNYPFLIV 125 (513)
Q Consensus 52 ~~~~~~-~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~--GRr~~~~~~~~~~~-i~~~~~~~~--~~~~~l~~ 125 (513)
....|. +++.+|.+..+.++..+...++..++.++.|+++||+ |||+.+.++..+.. ++..+..+. .+.+.+.+
T Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T 1pw4_A 272 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 351 (451)
T ss_dssp HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 334444 4555899999999999999999999999999999999 99999988887777 555555555 36777888
Q ss_pred HHHHhhhhcccccccccceeeccCCCcccccccchhhHHHHH-HHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHH
Q 010317 126 GRMIAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVL-GILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGV 204 (513)
Q Consensus 126 ~R~l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~ 204 (513)
.-++.|++.+...+....++.|..|+++|+.+.++.+....+ |..+++.+...+. +..+|+..|++.++..++..+
T Consensus 352 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~---~~~g~~~~~~~~~~~~~~~~~ 428 (451)
T 1pw4_A 352 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV---DFFGWDGGFMVMIGGSILAVI 428 (451)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHH
Confidence 888999988888877788999999999999999999888888 8888776654443 234799998887776665555
Q ss_pred HH
Q 010317 205 GV 206 (513)
Q Consensus 205 ~~ 206 (513)
..
T Consensus 429 ~~ 430 (451)
T 1pw4_A 429 LL 430 (451)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.95 E-value=1.7e-09 Score=110.24 Aligned_cols=159 Identities=14% Similarity=0.077 Sum_probs=103.9
Q ss_pred hhHHHHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhc----CcHHHHHHHHH-
Q 010317 54 AVLYIKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLA----PNYPFLIVGRM- 128 (513)
Q Consensus 54 ~~~~~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~----~~~~~l~~~R~- 128 (513)
-.+.+.++.+.+..+.........+...++.++++++.||+|||+.++.+..+..++.+..+.. ......++.-+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 378 (491)
T 4gc0_A 299 YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLF 378 (491)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 3456777788777777777778888899999999999999999999999988887776655432 12222222222
Q ss_pred -HhhhhcccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcC---CCCCcchHHHHHhhhHHHHHHHH
Q 010317 129 -IAGIGVGYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSG---LPGNINWRIMLGLAAVPAAVIGV 204 (513)
Q Consensus 129 -l~G~~~g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~---~~~~~~Wr~~~~~~~~~~~i~~~ 204 (513)
..+++.+ ..++...|.+|.+|++.|+..+++......+|..++......+.. .....++.+.|++.++.+++..+
T Consensus 379 ~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i 457 (491)
T 4gc0_A 379 YVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL 457 (491)
T ss_dssp HHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 2222222 234556789999999999999998877766665554433222110 00112445566666665555444
Q ss_pred -HHhccCCCc
Q 010317 205 -GVLIMPESP 213 (513)
Q Consensus 205 -~~~~lpEsp 213 (513)
.++++|||.
T Consensus 458 ~~~~~~PETk 467 (491)
T 4gc0_A 458 FMWKFVPETK 467 (491)
T ss_dssp HHHHHCCCCT
T ss_pred HHHheecCCC
Confidence 467899995
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.93 E-value=4.8e-10 Score=111.84 Aligned_cols=146 Identities=10% Similarity=0.023 Sum_probs=110.5
Q ss_pred chhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhccccccccccee
Q 010317 66 EVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGVGYSLMISPVYT 145 (513)
Q Consensus 66 ~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~ 145 (513)
..+.++..++..++..++.++.|+++||+|||+.+..+.++.++.....++.++.+.+++..++.+++.+...+....++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777888899999999999999999999999988888877778888888888888888887666555567899
Q ss_pred eccCCCcccccccch-hhHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHhhhHHHHHHHHH-HhccCCCch
Q 010317 146 AEISPTMKRGFLTSL-PEVFIVLGILSGYVFNYALSGLPGNINWRIMLGLAAVPAAVIGVG-VLIMPESPR 214 (513)
Q Consensus 146 ~e~~p~~~R~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~~i~~~~-~~~lpEsp~ 214 (513)
+|.+|++.||...+. ++....+|..+++.+...+. +..+++..|.+.++..++..+. .+..||.++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~---~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY---ESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH---HHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 999999999998877 36566677766665543332 1346888888777766655544 445666554
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.93 E-value=1.3e-09 Score=109.29 Aligned_cols=141 Identities=13% Similarity=-0.067 Sum_probs=108.7
Q ss_pred HH-HHhhhCCCchhHHHHHHHHHHHHHHHHhhccccccccCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhhc
Q 010317 56 LY-IKEDLEITEVQVEVLVGILNVFSLIGSLASGKTSDYIGRRYTIVVAAATFLVGALAMGLAPNYPFLIVGRMIAGIGV 134 (513)
Q Consensus 56 ~~-~~~~~~~s~~~~~~~~s~~~~g~~ig~~~~g~l~dr~GRr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~ 134 (513)
++ +++.+|.+..+.++..+.+.++..++.++.|+++||+|||+.+.++.++..++.++..+.++...++.. ++.|++.
T Consensus 283 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~ 361 (438)
T 3o7q_A 283 RYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFM 361 (438)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHH
T ss_pred HHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHH
Confidence 45 566679999999999999999999999999999999999999999999999999888888887765554 8888998
Q ss_pred ccccccccceeeccCCCcccccccchhhHHHHHHHHHHHHHHHHhcCCCCCcc-hHHHHHhhhHHHHHH
Q 010317 135 GYSLMISPVYTAEISPTMKRGFLTSLPEVFIVLGILSGYVFNYALSGLPGNIN-WRIMLGLAAVPAAVI 202 (513)
Q Consensus 135 g~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-Wr~~~~~~~~~~~i~ 202 (513)
+...+....+..|..|++ |+...++.. ...+|..+++.+...+. +..+ ++..|++.++..++.
T Consensus 362 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~---~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 362 SIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVS---DAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp TTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHH---HHHTSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHH---HHhcchHHHHHHHHHHHHHH
Confidence 888888888889999866 777777655 33455555555433332 1335 777776654443333
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.75 E-value=1e-07 Score=97.00 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=99.7
Q ss_pred cchhhhccHHHHHHh------CCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhc-cCChhHHHhhhHHHHHHHHHHHHHh
Q 010317 304 GNDAVIYYTPAVFKG------AGIHRKPVLFGINVVMGLAKTFFVVLSALHLDK-FGRRPLLLLGSSGMVGSLLLLGIGS 376 (513)
Q Consensus 304 ~~~~~~~~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~grr~~~~~~~~~~~~~~~~~~~~~ 376 (513)
+++....+.+.++.+ .+.+.. ....+.....++..++.++.|++.|| +|||+.+..+.....++.++.+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~-- 104 (491)
T 4aps_A 28 SYYGMRAILLYYMWFLISTGDLHITRA-TAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL-- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHhccchhhcCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH--
Confidence 344455556666554 343322 23334556677888899999999999 89999998876655544444332
Q ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhh--HhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 010317 377 KILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRL--RAQGSALAISVNRLVSGVISMTFLSISHRLSF 454 (513)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~--R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (513)
. .+.+......+... .......+....+.+|.+|++. |+.+.++.+...+++..+.+.....+.+..++
T Consensus 105 ---~--~~~~~~~~~~~l~g----~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~ 175 (491)
T 4aps_A 105 ---P--FGASALFGSIILII----IGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGY 175 (491)
T ss_dssp ---C--CSTTHHHHHHHHHH----HHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred ---h--hhHHHHHHHHHHHH----HHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 1 11122111111111 1111122345678899999988 77778777788887776766666666677778
Q ss_pred chhHHHHHHHHHHHHHhhheeccc
Q 010317 455 GGTFFLLAGITTVGTIFFYVFLPE 478 (513)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~pe 478 (513)
.+.|++.++..+++.+...+..|+
T Consensus 176 ~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 176 HVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcc
Confidence 888888777666665554443343
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.73 E-value=1.8e-08 Score=98.67 Aligned_cols=166 Identities=12% Similarity=0.085 Sum_probs=105.1
Q ss_pred chhhhccHHHHHHhCCCCCchhHHHHHHHHhHHHHHHHHHHHHHhhccCChhHHHhhhHHHHHHHHHHHHHhhccCCCCc
Q 010317 305 NDAVIYYTPAVFKGAGIHRKPVLFGINVVMGLAKTFFVVLSALHLDKFGRRPLLLLGSSGMVGSLLLLGIGSKILEGSTP 384 (513)
Q Consensus 305 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (513)
........|.+.++.+.+... .........+...++.++.+++.||+|||+.+..+......+.++.+... +
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-------~ 87 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGA-VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS-------S 87 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHH-HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH-------H
T ss_pred HHHHhhhhHHHHHHcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-------c
Confidence 344444566666665544433 23345556777888899999999999999998887766655555444321 1
Q ss_pred hhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Q 010317 385 TVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSALAISVNRLVSGVISMTFLSISHRLSFGGTFFLLAGI 464 (513)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (513)
.+....... ..+.......+....+.+|.+|++.|+.+.++.+....++..+.+.....+.+..++...+++.+++
T Consensus 88 ~~~l~~~~~----l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 88 LTVLIAASA----MQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 111111111 1111111222345667899999999999999998888876666655555544445666778888777
Q ss_pred HHHHHHhhheecccCCCC
Q 010317 465 TTVGTIFFYVFLPETKGK 482 (513)
Q Consensus 465 ~~~~~~~~~~~~pet~~~ 482 (513)
.++..+...+.+||++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHCcccCCC
Confidence 777766566777887544
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.57 E-value=4.7e-07 Score=92.91 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=96.2
Q ss_pred cchhhhccHHHHHHh-CC------CCCchhHHHHHHHHhHHHHHHHHHHHHHhhcc-CChhHHHhhhHHHHHHHHHHHHH
Q 010317 304 GNDAVIYYTPAVFKG-AG------IHRKPVLFGINVVMGLAKTFFVVLSALHLDKF-GRRPLLLLGSSGMVGSLLLLGIG 375 (513)
Q Consensus 304 ~~~~~~~~~p~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-grr~~~~~~~~~~~~~~~~~~~~ 375 (513)
+.+....++|.++.+ .+ .+.... ........++..++.++.|++.||+ |||+.+..+.+...++.++.+..
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~-g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~ 105 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVA-KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF 105 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTH-HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh
Confidence 344455566666653 34 333322 2344556677788889999999999 99999887766555554444321
Q ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhccccceeeeeecccCChhhHhhHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Q 010317 376 SKILEGSTPTVVVVLCIIAVCAFVSFFSIGLGPITWVYSSEIFPLRLRAQGSAL---AISVNRLVSGVISMTFLSISHRL 452 (513)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~P~~~R~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~ 452 (513)
. .+.+...... ...+.......+....+.+|.+|++.|+.+.+. .+...+++..+.+.....+.+..
T Consensus 106 ~------~~~~~~~~~~----~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (524)
T 2xut_A 106 E------HSVQGFYTGL----FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF 175 (524)
T ss_dssp S------SCHHHHHHHH----HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred c------ccHHHHHHHH----HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 0112111111 111222222334556788999999999876665 66777776666665555556666
Q ss_pred ccchhHHHHHHHHHHHHHhhhe
Q 010317 453 SFGGTFFLLAGITTVGTIFFYV 474 (513)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~ 474 (513)
++.+.|++.+++.+++.+...+
T Consensus 176 g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 176 GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888777776665554433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=26.54 E-value=10 Score=19.16 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=9.7
Q ss_pred ccccccccCchHH
Q 010317 87 SGKTSDYIGRRYT 99 (513)
Q Consensus 87 ~g~l~dr~GRr~~ 99 (513)
+|.+..+||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5677888999853
Done!