Query 010318
Match_columns 513
No_of_seqs 424 out of 3420
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 23:07:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5256 TEF1 Translation elong 100.0 4.4E-97 1E-101 730.3 41.0 423 78-507 3-427 (428)
2 PLN00043 elongation factor 1-a 100.0 1.1E-85 2.4E-90 688.3 49.7 428 79-511 4-434 (447)
3 KOG0459 Polypeptide release fa 100.0 6.8E-87 1.5E-91 648.9 33.5 427 77-508 74-501 (501)
4 PTZ00141 elongation factor 1- 100.0 3.4E-84 7.3E-89 677.8 51.2 427 79-510 4-433 (446)
5 KOG0458 Elongation factor 1 al 100.0 2.5E-83 5.5E-88 652.6 36.8 429 74-507 169-602 (603)
6 PRK12317 elongation factor 1-a 100.0 2E-79 4.4E-84 643.6 49.4 417 79-509 3-423 (425)
7 TIGR00483 EF-1_alpha translati 100.0 1.9E-78 4E-83 636.1 50.3 420 79-509 4-425 (426)
8 COG2895 CysN GTPases - Sulfate 100.0 7.4E-76 1.6E-80 564.2 36.0 409 79-508 3-417 (431)
9 PRK05124 cysN sulfate adenylyl 100.0 1.1E-74 2.3E-79 610.4 48.0 410 78-507 23-438 (474)
10 TIGR02034 CysN sulfate adenyly 100.0 7.9E-75 1.7E-79 602.9 44.5 400 83-503 1-406 (406)
11 PRK05506 bifunctional sulfate 100.0 6.4E-71 1.4E-75 604.2 47.8 411 78-509 20-436 (632)
12 PLN03126 Elongation factor Tu; 100.0 4E-67 8.6E-72 550.2 44.7 389 78-507 77-477 (478)
13 CHL00071 tufA elongation facto 100.0 4.9E-66 1.1E-70 537.9 45.2 390 78-508 8-409 (409)
14 PRK12735 elongation factor Tu; 100.0 8.1E-66 1.8E-70 534.1 45.7 379 78-507 8-395 (396)
15 PRK00049 elongation factor Tu; 100.0 1.8E-65 4E-70 531.0 45.9 379 78-507 8-395 (396)
16 PRK12736 elongation factor Tu; 100.0 5.7E-65 1.2E-69 527.4 45.2 377 78-507 8-393 (394)
17 TIGR00485 EF-Tu translation el 100.0 3.5E-64 7.7E-69 522.2 44.7 377 78-507 8-393 (394)
18 PLN03127 Elongation factor Tu; 100.0 7.3E-64 1.6E-68 523.3 44.3 376 78-507 57-446 (447)
19 COG0050 TufB GTPases - transla 100.0 3E-60 6.5E-65 445.6 32.7 377 78-507 8-393 (394)
20 KOG0460 Mitochondrial translat 100.0 4.2E-61 9.1E-66 459.2 24.8 382 77-508 49-438 (449)
21 PTZ00327 eukaryotic translatio 100.0 3.9E-56 8.4E-61 463.9 39.7 346 78-505 30-451 (460)
22 PRK10512 selenocysteinyl-tRNA- 100.0 1E-53 2.2E-58 462.1 39.0 339 83-511 1-345 (614)
23 COG5258 GTPBP1 GTPase [General 100.0 8.8E-54 1.9E-58 414.6 30.9 361 78-506 113-526 (527)
24 TIGR03680 eif2g_arch translati 100.0 5.7E-52 1.2E-56 431.9 38.7 341 80-503 2-405 (406)
25 PRK04000 translation initiatio 100.0 1.1E-51 2.4E-56 429.3 40.0 343 78-503 5-410 (411)
26 TIGR00475 selB selenocysteine- 100.0 2.6E-50 5.6E-55 434.6 39.7 335 83-506 1-338 (581)
27 KOG0463 GTP-binding protein GP 100.0 1.4E-51 3E-56 397.7 21.3 378 81-512 132-552 (641)
28 COG3276 SelB Selenocysteine-sp 100.0 1.6E-48 3.4E-53 388.5 31.3 337 84-510 2-343 (447)
29 KOG1143 Predicted translation 100.0 1.8E-45 3.9E-50 355.1 24.1 376 81-508 166-584 (591)
30 COG5257 GCD11 Translation init 100.0 1.7E-41 3.7E-46 322.9 32.3 343 80-505 8-413 (415)
31 KOG0052 Translation elongation 100.0 2.6E-44 5.7E-49 354.4 10.6 369 79-511 4-376 (391)
32 TIGR01394 TypA_BipA GTP-bindin 100.0 6.7E-40 1.4E-44 352.9 28.6 279 82-395 1-289 (594)
33 cd01883 EF1_alpha Eukaryotic e 100.0 1.9E-38 4.1E-43 304.1 23.5 218 84-304 1-218 (219)
34 KOG0461 Selenocysteine-specifi 100.0 5.2E-38 1.1E-42 300.9 22.3 347 81-481 6-380 (522)
35 KOG0462 Elongation factor-type 100.0 3E-38 6.6E-43 319.3 21.2 266 80-394 58-332 (650)
36 COG1217 TypA Predicted membran 100.0 3.8E-37 8.3E-42 305.6 27.1 281 80-396 3-294 (603)
37 PRK10218 GTP-binding protein; 100.0 4.6E-37 9.9E-42 330.4 28.2 279 80-395 3-293 (607)
38 TIGR01393 lepA GTP-binding pro 100.0 6.4E-37 1.4E-41 330.7 29.1 267 81-396 2-279 (595)
39 PRK05433 GTP-binding protein L 100.0 5.6E-37 1.2E-41 331.4 28.6 268 80-396 5-283 (600)
40 cd04166 CysN_ATPS CysN_ATPS su 100.0 9.5E-37 2.1E-41 290.1 21.4 207 84-304 1-207 (208)
41 COG0481 LepA Membrane GTPase L 100.0 2.3E-36 5E-41 301.0 24.6 267 78-394 5-283 (603)
42 KOG1145 Mitochondrial translat 100.0 2.4E-35 5.3E-40 297.9 20.2 252 77-392 148-406 (683)
43 COG0532 InfB Translation initi 100.0 6.2E-35 1.3E-39 298.7 22.8 234 80-374 3-245 (509)
44 TIGR00487 IF-2 translation ini 100.0 4.4E-34 9.5E-39 307.1 26.9 249 79-391 84-339 (587)
45 PRK05306 infB translation init 100.0 4.4E-34 9.6E-39 313.5 26.6 249 79-392 287-542 (787)
46 cd01884 EF_Tu EF-Tu subfamily. 100.0 1.7E-34 3.7E-39 270.8 19.9 192 81-303 1-193 (195)
47 PRK07560 elongation factor EF- 100.0 7.3E-33 1.6E-37 307.7 26.1 290 77-394 15-375 (731)
48 PRK00007 elongation factor G; 100.0 3.6E-32 7.8E-37 300.5 28.5 281 79-394 7-394 (693)
49 COG0480 FusA Translation elong 100.0 9.3E-32 2E-36 290.9 27.6 277 79-394 7-392 (697)
50 PRK12739 elongation factor G; 100.0 1.1E-31 2.5E-36 296.8 27.8 273 79-394 5-391 (691)
51 CHL00189 infB translation init 100.0 9.7E-32 2.1E-36 292.5 25.4 251 79-393 241-501 (742)
52 PRK04004 translation initiatio 100.0 1.4E-31 3E-36 288.4 26.2 260 79-390 3-325 (586)
53 PRK00741 prfC peptide chain re 100.0 4.9E-31 1.1E-35 280.8 28.3 280 80-394 8-380 (526)
54 KOG1144 Translation initiation 100.0 1.5E-32 3.2E-37 284.4 15.4 246 79-374 472-793 (1064)
55 PF00009 GTP_EFTU: Elongation 100.0 1.2E-31 2.5E-36 251.1 19.6 176 80-281 1-179 (188)
56 TIGR00491 aIF-2 translation in 100.0 4E-31 8.6E-36 283.7 25.7 259 80-390 2-323 (590)
57 TIGR00484 EF-G translation elo 100.0 1.8E-30 3.9E-35 287.4 29.3 273 79-394 7-392 (689)
58 TIGR00503 prfC peptide chain r 100.0 3.3E-30 7.2E-35 274.5 27.7 277 79-394 8-381 (527)
59 PRK13351 elongation factor G; 100.0 1E-29 2.2E-34 282.0 28.5 272 80-394 6-390 (687)
60 TIGR00490 aEF-2 translation el 100.0 1.1E-29 2.5E-34 281.5 22.0 289 78-394 15-374 (720)
61 COG4108 PrfC Peptide chain rel 100.0 1.3E-29 2.8E-34 251.0 17.8 280 80-394 10-382 (528)
62 PRK12740 elongation factor G; 100.0 1.1E-28 2.4E-33 273.2 27.1 264 88-394 1-373 (668)
63 KOG0466 Translation initiation 100.0 1.7E-30 3.7E-35 245.7 10.0 349 78-505 34-458 (466)
64 PLN00116 translation elongatio 100.0 1.1E-28 2.4E-33 277.3 24.3 157 75-254 12-190 (843)
65 KOG0465 Mitochondrial elongati 100.0 8.3E-29 1.8E-33 253.4 15.4 276 80-394 37-421 (721)
66 PTZ00416 elongation factor 2; 100.0 1E-27 2.2E-32 269.0 24.8 153 79-254 16-184 (836)
67 PRK14845 translation initiatio 100.0 4.8E-27 1E-31 263.0 24.9 253 83-391 466-781 (1049)
68 cd01885 EF2 EF2 (for archaea a 99.9 2.8E-27 6E-32 225.7 16.2 172 83-277 1-200 (222)
69 cd04165 GTPBP1_like GTPBP1-lik 99.9 4.3E-26 9.4E-31 218.4 17.5 191 84-303 1-223 (224)
70 cd01886 EF-G Elongation factor 99.9 9.5E-26 2.1E-30 221.9 15.7 174 84-288 1-175 (270)
71 cd01889 SelB_euk SelB subfamil 99.9 7.7E-25 1.7E-29 205.6 17.6 163 83-280 1-177 (192)
72 cd01888 eIF2_gamma eIF2-gamma 99.9 5.7E-25 1.2E-29 208.3 16.5 157 83-280 1-190 (203)
73 cd04168 TetM_like Tet(M)-like 99.9 4.1E-24 8.9E-29 206.7 17.4 144 84-249 1-144 (237)
74 KOG0469 Elongation factor 2 [T 99.9 1.3E-24 2.9E-29 217.3 13.9 306 74-404 11-484 (842)
75 cd01891 TypA_BipA TypA (tyrosi 99.9 1.6E-23 3.4E-28 197.1 17.6 171 82-280 2-173 (194)
76 cd04167 Snu114p Snu114p subfam 99.9 4.3E-23 9.4E-28 197.0 18.4 165 83-269 1-176 (213)
77 KOG0467 Translation elongation 99.9 9.4E-23 2E-27 213.6 22.1 177 78-278 5-206 (887)
78 KOG0464 Elongation factor G [T 99.9 9.2E-25 2E-29 214.2 5.6 276 80-394 35-419 (753)
79 cd01890 LepA LepA subfamily. 99.9 6.4E-23 1.4E-27 189.9 17.1 164 83-281 1-169 (179)
80 cd04171 SelB SelB subfamily. 99.9 2.7E-22 5.9E-27 182.4 17.7 157 83-281 1-158 (164)
81 cd04169 RF3 RF3 subfamily. Pe 99.9 1.3E-22 2.7E-27 199.5 16.3 138 82-236 2-139 (267)
82 cd03704 eRF3c_III This family 99.9 1.2E-22 2.6E-27 172.3 12.5 107 399-506 2-108 (108)
83 cd04093 HBS1_C HBS1_C: this fa 99.9 1.2E-21 2.7E-26 165.9 14.0 106 399-506 2-107 (107)
84 COG1160 Predicted GTPases [Gen 99.9 1.6E-21 3.4E-26 197.3 15.3 158 80-282 176-344 (444)
85 cd00881 GTP_translation_factor 99.9 7.8E-21 1.7E-25 176.9 18.1 171 84-281 1-179 (189)
86 KOG0468 U5 snRNP-specific prot 99.9 1.5E-20 3.2E-25 194.0 21.1 157 78-256 124-291 (971)
87 PF02421 FeoB_N: Ferrous iron 99.9 1.4E-21 3E-26 174.9 9.6 145 83-281 1-153 (156)
88 cd03705 EF1_alpha_III Domain I 99.9 3.1E-21 6.7E-26 162.6 11.1 102 399-503 2-104 (104)
89 COG1160 Predicted GTPases [Gen 99.8 8.3E-21 1.8E-25 192.1 14.1 146 83-282 4-158 (444)
90 cd04170 EF-G_bact Elongation f 99.8 3.3E-20 7.1E-25 183.4 16.2 165 84-281 1-165 (268)
91 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 4.2E-20 9.1E-25 168.8 15.7 155 83-282 1-159 (168)
92 COG1159 Era GTPase [General fu 99.8 1.9E-20 4.2E-25 179.9 12.8 155 79-282 3-165 (298)
93 PF03143 GTP_EFTU_D3: Elongati 99.8 1.6E-19 3.4E-24 150.4 13.8 98 396-506 1-98 (99)
94 cd04095 CysN_NoDQ_III TCysN_No 99.8 1.1E-19 2.3E-24 152.9 11.8 100 399-503 2-103 (103)
95 TIGR03594 GTPase_EngA ribosome 99.8 2.1E-19 4.5E-24 189.8 15.5 157 80-282 170-337 (429)
96 PRK00093 GTP-binding protein D 99.8 3.4E-19 7.4E-24 188.4 16.6 156 80-282 171-337 (435)
97 cd01895 EngA2 EngA2 subfamily. 99.8 1.7E-18 3.7E-23 158.4 16.3 155 82-281 2-167 (174)
98 TIGR00436 era GTP-binding prot 99.8 1.9E-18 4E-23 171.0 16.7 148 84-282 2-157 (270)
99 cd04160 Arfrp1 Arfrp1 subfamil 99.8 1.3E-18 2.8E-23 159.0 14.1 156 84-280 1-160 (167)
100 cd01894 EngA1 EngA1 subfamily. 99.8 2.1E-18 4.5E-23 155.4 13.0 143 86-282 1-151 (157)
101 TIGR03598 GTPase_YsxC ribosome 99.8 4.9E-18 1.1E-22 157.6 15.4 153 78-278 14-179 (179)
102 TIGR03594 GTPase_EngA ribosome 99.8 4.3E-18 9.3E-23 179.7 15.4 145 84-282 1-153 (429)
103 PRK15494 era GTPase Era; Provi 99.8 7.4E-18 1.6E-22 171.6 16.4 152 80-282 50-209 (339)
104 cd01513 Translation_factor_III 99.8 4.9E-18 1.1E-22 142.5 12.0 101 399-503 2-102 (102)
105 PRK03003 GTP-binding protein D 99.8 9.1E-18 2E-22 178.7 15.1 155 81-282 210-375 (472)
106 PRK03003 GTP-binding protein D 99.8 1.7E-17 3.7E-22 176.6 17.1 149 80-282 36-192 (472)
107 cd01879 FeoB Ferrous iron tran 99.7 1E-17 2.2E-22 151.3 11.5 142 87-282 1-150 (158)
108 PRK00089 era GTPase Era; Revie 99.7 5.6E-17 1.2E-21 162.4 17.1 154 80-282 3-164 (292)
109 PRK09518 bifunctional cytidyla 99.7 3.9E-17 8.4E-22 181.8 16.7 151 78-282 271-429 (712)
110 PRK09554 feoB ferrous iron tra 99.7 6.6E-17 1.4E-21 179.4 16.4 148 81-282 2-161 (772)
111 cd01898 Obg Obg subfamily. Th 99.7 4.9E-17 1.1E-21 148.9 12.8 148 84-281 2-163 (170)
112 cd03693 EF1_alpha_II EF1_alpha 99.7 3.8E-17 8.3E-22 133.9 10.7 87 309-395 2-90 (91)
113 cd01864 Rab19 Rab19 subfamily. 99.7 5E-17 1.1E-21 148.4 12.6 152 81-281 2-158 (165)
114 PRK00093 GTP-binding protein D 99.7 9.6E-17 2.1E-21 169.7 16.1 146 83-282 2-155 (435)
115 PRK09518 bifunctional cytidyla 99.7 7.7E-17 1.7E-21 179.4 15.3 155 81-282 449-614 (712)
116 cd04164 trmE TrmE (MnmE, ThdF, 99.7 1.5E-16 3.2E-21 143.2 13.6 139 83-281 2-149 (157)
117 cd04154 Arl2 Arl2 subfamily. 99.7 7.3E-17 1.6E-21 148.7 11.4 151 81-281 13-167 (173)
118 cd04124 RabL2 RabL2 subfamily. 99.7 2E-16 4.3E-21 144.1 14.0 149 83-282 1-151 (161)
119 cd04157 Arl6 Arl6 subfamily. 99.7 1.2E-16 2.6E-21 145.0 12.3 150 84-281 1-156 (162)
120 TIGR00231 small_GTP small GTP- 99.7 7.7E-17 1.7E-21 144.3 10.8 152 83-280 2-155 (161)
121 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 9.4E-17 2E-21 149.5 11.6 159 82-282 3-163 (183)
122 cd04145 M_R_Ras_like M-Ras/R-R 99.7 1.5E-16 3.3E-21 144.6 12.7 150 82-282 2-157 (164)
123 cd04151 Arl1 Arl1 subfamily. 99.7 9.3E-17 2E-21 145.6 11.2 148 84-281 1-152 (158)
124 cd01897 NOG NOG1 is a nucleola 99.7 2.4E-16 5.1E-21 144.1 13.9 150 83-282 1-161 (168)
125 cd01860 Rab5_related Rab5-rela 99.7 3.4E-16 7.4E-21 142.3 14.8 151 83-281 2-155 (163)
126 cd01861 Rab6 Rab6 subfamily. 99.7 3.1E-16 6.6E-21 142.3 14.3 148 84-281 2-154 (161)
127 cd04089 eRF3_II eRF3_II: domai 99.7 1.5E-16 3.4E-21 127.7 10.8 82 311-392 1-82 (82)
128 PRK15467 ethanolamine utilizat 99.7 1.2E-16 2.5E-21 145.3 11.3 134 84-282 3-140 (158)
129 smart00175 RAB Rab subfamily o 99.7 3.3E-16 7.3E-21 142.3 13.5 149 83-282 1-155 (164)
130 cd04138 H_N_K_Ras_like H-Ras/N 99.7 3.4E-16 7.3E-21 141.7 13.2 148 83-282 2-155 (162)
131 PRK04213 GTP-binding protein; 99.7 5E-16 1.1E-20 146.7 14.5 156 81-282 8-185 (201)
132 COG0486 ThdF Predicted GTPase 99.7 2E-16 4.4E-21 160.8 12.5 147 80-282 215-369 (454)
133 cd04163 Era Era subfamily. Er 99.7 8.3E-16 1.8E-20 139.2 15.3 152 81-281 2-161 (168)
134 TIGR02528 EutP ethanolamine ut 99.7 1.8E-16 3.8E-21 141.0 10.4 132 84-281 2-137 (142)
135 cd01863 Rab18 Rab18 subfamily. 99.7 9.8E-16 2.1E-20 139.0 15.5 150 83-281 1-154 (161)
136 cd01862 Rab7 Rab7 subfamily. 99.7 1.1E-15 2.5E-20 140.0 15.7 146 83-282 1-160 (172)
137 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 5.9E-16 1.3E-20 142.9 13.8 151 81-281 14-168 (174)
138 PRK00454 engB GTP-binding prot 99.7 1.2E-15 2.6E-20 143.2 16.1 153 79-281 21-186 (196)
139 cd04113 Rab4 Rab4 subfamily. 99.7 4.2E-16 9.1E-21 141.5 12.4 149 83-281 1-154 (161)
140 cd04149 Arf6 Arf6 subfamily. 99.7 3E-16 6.5E-21 144.0 11.4 151 81-281 8-162 (168)
141 cd03698 eRF3_II_like eRF3_II_l 99.7 4.2E-16 9.1E-21 125.5 10.7 82 311-392 1-83 (83)
142 cd00154 Rab Rab family. Rab G 99.7 1.1E-15 2.3E-20 137.3 14.4 150 83-281 1-154 (159)
143 cd04158 ARD1 ARD1 subfamily. 99.7 3.2E-16 6.9E-21 143.9 11.1 150 84-282 1-154 (169)
144 PRK12298 obgE GTPase CgtA; Rev 99.7 3.4E-16 7.5E-21 161.4 12.6 157 80-282 157-326 (390)
145 cd01866 Rab2 Rab2 subfamily. 99.7 5.6E-16 1.2E-20 142.1 12.6 151 82-281 4-158 (168)
146 cd04106 Rab23_lke Rab23-like s 99.7 1.4E-15 3E-20 138.1 15.0 148 83-281 1-155 (162)
147 smart00173 RAS Ras subfamily o 99.7 4.4E-16 9.6E-21 141.7 11.8 147 84-282 2-155 (164)
148 PLN00223 ADP-ribosylation fact 99.7 1E-15 2.3E-20 142.2 14.2 153 80-282 15-171 (181)
149 cd01878 HflX HflX subfamily. 99.7 5E-16 1.1E-20 147.1 12.2 147 80-281 39-197 (204)
150 cd01867 Rab8_Rab10_Rab13_like 99.7 1.4E-15 3.1E-20 139.2 14.4 151 82-282 3-158 (167)
151 cd04150 Arf1_5_like Arf1-Arf5- 99.7 1.4E-15 3E-20 138.3 13.8 149 83-281 1-153 (159)
152 cd04156 ARLTS1 ARLTS1 subfamil 99.7 1.5E-15 3.3E-20 137.6 13.8 149 84-281 1-154 (160)
153 COG0370 FeoB Fe2+ transport sy 99.7 5.5E-16 1.2E-20 164.0 12.4 146 82-282 3-157 (653)
154 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 1E-15 2.2E-20 139.8 12.6 151 82-282 2-157 (166)
155 cd01865 Rab3 Rab3 subfamily. 99.7 1E-15 2.3E-20 139.8 12.7 152 83-282 2-156 (165)
156 cd04114 Rab30 Rab30 subfamily. 99.7 1.2E-15 2.5E-20 139.7 12.9 153 80-282 5-162 (169)
157 cd04119 RJL RJL (RabJ-Like) su 99.7 2.2E-15 4.7E-20 137.2 14.6 149 83-282 1-160 (168)
158 COG2229 Predicted GTPase [Gene 99.7 2E-15 4.3E-20 135.0 13.7 162 78-280 6-169 (187)
159 PF10662 PduV-EutP: Ethanolami 99.6 7.7E-16 1.7E-20 134.8 10.8 133 83-281 2-138 (143)
160 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 2E-15 4.2E-20 142.8 14.4 151 83-282 1-161 (201)
161 cd00879 Sar1 Sar1 subfamily. 99.6 8E-16 1.7E-20 143.9 11.6 154 80-282 17-184 (190)
162 cd04127 Rab27A Rab27a subfamil 99.6 2.9E-15 6.3E-20 138.6 15.2 151 81-282 3-170 (180)
163 PRK05291 trmE tRNA modificatio 99.6 8.6E-16 1.9E-20 162.0 12.9 142 81-282 214-363 (449)
164 cd04116 Rab9 Rab9 subfamily. 99.6 6.5E-15 1.4E-19 135.0 17.1 151 81-281 4-163 (170)
165 COG0218 Predicted GTPase [Gene 99.6 2.7E-15 5.9E-20 137.2 14.3 158 78-282 20-190 (200)
166 cd04112 Rab26 Rab26 subfamily. 99.6 8E-16 1.7E-20 144.2 11.1 151 83-282 1-156 (191)
167 cd01868 Rab11_like Rab11-like. 99.6 9.8E-16 2.1E-20 139.7 11.4 151 82-282 3-158 (165)
168 PRK12299 obgE GTPase CgtA; Rev 99.6 2E-15 4.4E-20 152.8 14.6 154 79-282 155-321 (335)
169 cd04142 RRP22 RRP22 subfamily. 99.6 3.3E-15 7.1E-20 140.9 14.9 151 83-282 1-167 (198)
170 cd04175 Rap1 Rap1 subgroup. T 99.6 1.7E-15 3.6E-20 138.1 12.5 148 83-282 2-156 (164)
171 TIGR03156 GTP_HflX GTP-binding 99.6 9.2E-16 2E-20 156.5 11.9 145 81-281 188-344 (351)
172 cd04140 ARHI_like ARHI subfami 99.6 4.1E-15 8.9E-20 135.8 15.0 149 83-281 2-157 (165)
173 smart00178 SAR Sar1p-like memb 99.6 2.6E-15 5.7E-20 139.9 14.0 157 80-281 15-177 (184)
174 smart00177 ARF ARF-like small 99.6 1.9E-15 4.1E-20 139.7 12.7 153 80-282 11-167 (175)
175 cd04122 Rab14 Rab14 subfamily. 99.6 1.3E-15 2.8E-20 139.3 11.3 151 83-281 3-156 (166)
176 cd03694 GTPBP_II Domain II of 99.6 1.4E-15 3.1E-20 123.4 10.0 81 312-392 1-87 (87)
177 TIGR02729 Obg_CgtA Obg family 99.6 2.3E-15 5E-20 152.2 13.9 156 79-282 154-322 (329)
178 PRK12296 obgE GTPase CgtA; Rev 99.6 2.6E-15 5.7E-20 157.6 14.7 160 78-282 155-333 (500)
179 cd04139 RalA_RalB RalA/RalB su 99.6 2.8E-15 6.1E-20 136.1 13.1 148 83-282 1-155 (164)
180 PLN03118 Rab family protein; P 99.6 5.7E-15 1.2E-19 140.7 15.5 154 80-282 12-170 (211)
181 cd00878 Arf_Arl Arf (ADP-ribos 99.6 1.5E-15 3.2E-20 137.5 10.9 148 84-281 1-152 (158)
182 cd04115 Rab33B_Rab33A Rab33B/R 99.6 6.1E-15 1.3E-19 135.5 14.8 149 82-280 2-160 (170)
183 PRK12297 obgE GTPase CgtA; Rev 99.6 4.8E-15 1E-19 153.8 15.7 152 80-282 156-320 (424)
184 cd04136 Rap_like Rap-like subf 99.6 7.3E-15 1.6E-19 133.4 15.1 149 83-282 2-156 (163)
185 TIGR00450 mnmE_trmE_thdF tRNA 99.6 3.7E-15 8.1E-20 156.4 14.9 145 80-282 201-353 (442)
186 cd01882 BMS1 Bms1. Bms1 is an 99.6 1.5E-14 3.3E-19 139.1 17.8 166 79-304 36-202 (225)
187 cd04118 Rab24 Rab24 subfamily. 99.6 3.4E-15 7.4E-20 140.0 13.1 155 83-282 1-159 (193)
188 cd04155 Arl3 Arl3 subfamily. 99.6 2E-15 4.3E-20 138.8 11.2 152 80-281 12-167 (173)
189 cd04144 Ras2 Ras2 subfamily. 99.6 3.1E-15 6.8E-20 140.1 12.5 148 84-282 1-156 (190)
190 cd04109 Rab28 Rab28 subfamily. 99.6 1.6E-14 3.5E-19 138.1 17.6 150 83-282 1-159 (215)
191 PTZ00133 ADP-ribosylation fact 99.6 4E-15 8.6E-20 138.4 13.0 153 80-282 15-171 (182)
192 PTZ00369 Ras-like protein; Pro 99.6 5.8E-15 1.3E-19 138.2 13.9 153 81-282 4-160 (189)
193 cd04120 Rab12 Rab12 subfamily. 99.6 3.8E-15 8.3E-20 140.6 12.7 151 83-282 1-156 (202)
194 cd04159 Arl10_like Arl10-like 99.6 6.8E-15 1.5E-19 132.2 13.7 148 85-281 2-153 (159)
195 cd04147 Ras_dva Ras-dva subfam 99.6 7.4E-15 1.6E-19 138.5 14.5 150 84-282 1-156 (198)
196 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 7.2E-15 1.6E-19 135.1 14.0 151 84-282 2-158 (170)
197 cd04123 Rab21 Rab21 subfamily. 99.6 6.3E-15 1.4E-19 133.3 13.3 149 83-282 1-155 (162)
198 PRK11058 GTPase HflX; Provisio 99.6 2.4E-15 5.2E-20 156.9 12.0 150 82-282 197-355 (426)
199 PF00025 Arf: ADP-ribosylation 99.6 6.9E-15 1.5E-19 136.0 13.7 153 80-281 12-168 (175)
200 cd04161 Arl2l1_Arl13_like Arl2 99.6 7.5E-15 1.6E-19 134.6 13.6 148 84-280 1-160 (167)
201 cd03697 EFTU_II EFTU_II: Elong 99.6 2.4E-15 5.1E-20 122.2 9.1 83 312-394 1-87 (87)
202 cd01893 Miro1 Miro1 subfamily. 99.6 7.6E-15 1.7E-19 134.2 13.4 154 83-282 1-157 (166)
203 cd04101 RabL4 RabL4 (Rab-like4 99.6 4.7E-15 1E-19 134.9 11.9 153 83-282 1-157 (164)
204 cd00877 Ran Ran (Ras-related n 99.6 5.7E-15 1.2E-19 135.2 12.5 148 83-282 1-152 (166)
205 cd04121 Rab40 Rab40 subfamily. 99.6 1.4E-14 3.1E-19 135.4 15.4 152 81-282 5-160 (189)
206 cd04110 Rab35 Rab35 subfamily. 99.6 1.6E-14 3.4E-19 136.4 15.7 152 81-282 5-160 (199)
207 TIGR00437 feoB ferrous iron tr 99.6 3.6E-15 7.8E-20 161.9 12.9 140 89-282 1-148 (591)
208 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 9.7E-15 2.1E-19 133.5 13.8 147 85-281 2-158 (164)
209 cd00157 Rho Rho (Ras homology) 99.6 2.4E-15 5.2E-20 137.7 9.8 158 83-281 1-165 (171)
210 cd04135 Tc10 TC10 subfamily. 99.6 4E-15 8.6E-20 136.9 11.3 156 83-282 1-167 (174)
211 cd04126 Rab20 Rab20 subfamily. 99.6 5.1E-15 1.1E-19 141.5 12.4 158 83-282 1-183 (220)
212 cd00880 Era_like Era (E. coli 99.6 8.3E-15 1.8E-19 131.1 13.1 148 87-281 1-156 (163)
213 KOG1423 Ras-like GTPase ERA [C 99.6 8.1E-15 1.8E-19 140.3 13.3 171 77-290 67-277 (379)
214 smart00174 RHO Rho (Ras homolo 99.6 4.2E-15 9.2E-20 136.7 11.0 152 85-282 1-165 (174)
215 cd04128 Spg1 Spg1p. Spg1p (se 99.6 2.2E-14 4.8E-19 133.4 15.7 154 83-282 1-159 (182)
216 cd04176 Rap2 Rap2 subgroup. T 99.6 8.2E-15 1.8E-19 133.3 12.4 148 83-281 2-155 (163)
217 cd01881 Obg_like The Obg-like 99.6 5.2E-15 1.1E-19 136.0 10.7 149 87-282 1-170 (176)
218 cd04132 Rho4_like Rho4-like su 99.6 1.1E-14 2.3E-19 135.9 12.6 154 83-282 1-160 (187)
219 cd01892 Miro2 Miro2 subfamily. 99.6 8.8E-15 1.9E-19 134.4 11.9 154 80-282 2-159 (169)
220 cd04137 RheB Rheb (Ras Homolog 99.6 1.4E-14 3.1E-19 134.1 13.4 149 83-282 2-156 (180)
221 cd01871 Rac1_like Rac1-like su 99.6 3.1E-14 6.8E-19 131.4 15.2 154 83-281 2-167 (174)
222 cd04177 RSR1 RSR1 subgroup. R 99.6 7.6E-15 1.7E-19 134.5 10.7 152 83-282 2-157 (168)
223 cd04125 RabA_like RabA-like su 99.6 1.3E-14 2.7E-19 135.7 12.3 151 83-282 1-155 (188)
224 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 2.4E-14 5.2E-19 131.9 13.7 149 82-282 2-157 (172)
225 cd03696 selB_II selB_II: this 99.6 1E-14 2.2E-19 117.5 9.8 81 312-392 1-83 (83)
226 cd00876 Ras Ras family. The R 99.6 1.5E-14 3.2E-19 130.6 12.1 147 84-281 1-153 (160)
227 PLN03110 Rab GTPase; Provision 99.6 3.2E-14 6.9E-19 136.1 14.6 151 81-282 11-167 (216)
228 cd01874 Cdc42 Cdc42 subfamily. 99.6 1.8E-14 3.8E-19 133.2 12.4 152 83-282 2-168 (175)
229 cd04143 Rhes_like Rhes_like su 99.6 3.4E-14 7.4E-19 138.4 14.8 149 83-282 1-164 (247)
230 PLN03071 GTP-binding nuclear p 99.6 3.9E-14 8.4E-19 135.8 14.2 153 80-282 11-165 (219)
231 cd01876 YihA_EngB The YihA (En 99.6 5.9E-14 1.3E-18 127.4 14.3 149 85-281 2-163 (170)
232 cd03706 mtEFTU_III Domain III 99.6 5.9E-14 1.3E-18 115.6 12.7 88 400-506 3-93 (93)
233 cd04130 Wrch_1 Wrch-1 subfamil 99.6 1.1E-14 2.3E-19 134.3 9.1 154 83-282 1-167 (173)
234 cd03695 CysN_NodQ_II CysN_NodQ 99.6 2.8E-14 6.2E-19 114.0 10.4 79 312-392 1-81 (81)
235 KOG0092 GTPase Rab5/YPT51 and 99.6 2.8E-14 6.1E-19 128.2 11.1 150 80-280 3-158 (200)
236 PLN03108 Rab family protein; P 99.5 2.5E-14 5.4E-19 136.2 11.3 152 82-282 6-161 (210)
237 cd04146 RERG_RasL11_like RERG/ 99.5 4.4E-14 9.5E-19 128.9 11.8 149 84-282 1-157 (165)
238 cd04117 Rab15 Rab15 subfamily. 99.5 1.2E-13 2.6E-18 125.7 14.5 147 84-281 2-154 (161)
239 cd01875 RhoG RhoG subfamily. 99.5 1.3E-13 2.8E-18 129.3 15.0 157 81-282 2-170 (191)
240 cd04134 Rho3 Rho3 subfamily. 99.5 7.1E-14 1.5E-18 130.8 13.2 158 83-282 1-167 (189)
241 cd04111 Rab39 Rab39 subfamily. 99.5 2.9E-14 6.3E-19 135.9 10.6 151 82-282 2-159 (211)
242 cd03708 GTPBP_III Domain III o 99.5 5.4E-14 1.2E-18 114.4 10.4 85 399-506 2-87 (87)
243 cd01870 RhoA_like RhoA-like su 99.5 4E-14 8.6E-19 130.3 10.6 158 83-282 2-168 (175)
244 PRK09866 hypothetical protein; 99.5 3.3E-13 7.2E-18 142.4 18.0 111 159-282 229-346 (741)
245 KOG1191 Mitochondrial GTPase [ 99.5 3.1E-14 6.6E-19 144.6 9.6 158 80-283 266-444 (531)
246 cd03707 EFTU_III Domain III of 99.5 1.4E-13 3E-18 112.6 11.2 85 400-503 3-90 (90)
247 PF01926 MMR_HSR1: 50S ribosom 99.5 7.8E-14 1.7E-18 119.7 10.1 107 84-229 1-116 (116)
248 cd01896 DRG The developmentall 99.5 1.9E-13 4.1E-18 132.1 13.7 82 84-196 2-90 (233)
249 smart00176 RAN Ran (Ras-relate 99.5 2.2E-13 4.7E-18 128.5 12.7 104 158-282 42-147 (200)
250 cd04133 Rop_like Rop subfamily 99.5 2.3E-13 5E-18 125.8 12.4 158 83-282 2-166 (176)
251 cd04105 SR_beta Signal recogni 99.5 5E-13 1.1E-17 126.5 14.6 131 83-251 1-140 (203)
252 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 5.1E-13 1.1E-17 124.2 13.9 157 80-282 3-173 (182)
253 cd00882 Ras_like_GTPase Ras-li 99.5 1.5E-13 3.3E-18 121.4 9.8 143 87-280 1-151 (157)
254 cd04148 RGK RGK subfamily. Th 99.5 4.9E-13 1.1E-17 128.3 13.6 151 83-282 1-156 (221)
255 cd04104 p47_IIGP_like p47 (47- 99.5 5.3E-13 1.2E-17 125.8 12.2 155 83-280 2-175 (197)
256 cd04131 Rnd Rnd subfamily. Th 99.5 5.8E-13 1.3E-17 123.4 12.1 154 83-282 2-169 (178)
257 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 1.6E-12 3.4E-17 125.1 15.0 162 80-282 11-181 (232)
258 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 9.3E-13 2E-17 124.0 12.9 155 83-280 1-175 (196)
259 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 1.6E-12 3.5E-17 124.4 13.4 153 83-282 2-169 (222)
260 KOG0084 GTPase Rab1/YPT1, smal 99.4 1E-12 2.2E-17 118.8 10.8 155 80-281 7-164 (205)
261 cd04129 Rho2 Rho2 subfamily. 99.4 1.5E-12 3.2E-17 121.7 11.6 155 83-282 2-166 (187)
262 PF00071 Ras: Ras family; Int 99.4 2.6E-12 5.6E-17 116.6 12.8 150 84-281 1-153 (162)
263 KOG0073 GTP-binding ADP-ribosy 99.4 4.2E-12 9E-17 111.1 13.0 153 79-280 13-169 (185)
264 PTZ00132 GTP-binding nuclear p 99.4 3.9E-12 8.4E-17 121.5 13.9 153 79-281 6-160 (215)
265 COG2262 HflX GTPases [General 99.4 1.3E-12 2.8E-17 131.0 10.4 149 79-282 189-349 (411)
266 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.4 7.3E-12 1.6E-16 112.8 14.1 157 79-282 19-178 (221)
267 KOG0078 GTP-binding protein SE 99.4 1.8E-12 3.9E-17 118.9 9.6 154 80-280 10-165 (207)
268 COG1084 Predicted GTPase [Gene 99.4 4E-12 8.7E-17 123.8 12.3 154 79-280 165-327 (346)
269 COG1163 DRG Predicted GTPase [ 99.4 1.9E-12 4.1E-17 125.6 9.9 87 80-197 61-154 (365)
270 KOG1489 Predicted GTP-binding 99.4 3.2E-12 6.8E-17 123.5 10.5 155 79-282 193-360 (366)
271 cd04103 Centaurin_gamma Centau 99.3 1.8E-11 3.9E-16 111.1 13.3 145 83-281 1-151 (158)
272 cd01873 RhoBTB RhoBTB subfamil 99.3 9.2E-12 2E-16 117.1 11.2 108 159-281 65-188 (195)
273 COG3596 Predicted GTPase [Gene 99.3 1.7E-11 3.7E-16 116.8 12.6 159 78-281 35-214 (296)
274 PF09439 SRPRB: Signal recogni 99.3 8E-12 1.7E-16 114.5 9.4 114 82-236 3-128 (181)
275 KOG0098 GTPase Rab2, small G p 99.3 7.8E-12 1.7E-16 111.7 8.3 150 82-281 6-160 (216)
276 KOG0394 Ras-related GTPase [Ge 99.3 3.1E-11 6.6E-16 107.8 10.6 155 79-281 6-170 (210)
277 KOG0070 GTP-binding ADP-ribosy 99.3 2.1E-11 4.6E-16 109.5 9.3 153 79-281 14-170 (181)
278 PF08477 Miro: Miro-like prote 99.3 9.1E-12 2E-16 107.1 6.8 114 84-231 1-119 (119)
279 KOG0075 GTP-binding ADP-ribosy 99.3 3.2E-11 6.9E-16 103.5 9.6 149 81-280 19-173 (186)
280 cd01850 CDC_Septin CDC/Septin. 99.3 1.1E-10 2.4E-15 115.6 15.0 143 82-258 4-177 (276)
281 KOG0076 GTP-binding ADP-ribosy 99.3 1.5E-11 3.2E-16 108.7 7.6 164 79-280 14-178 (197)
282 cd04102 RabL3 RabL3 (Rab-like3 99.2 2.2E-10 4.7E-15 108.1 14.8 153 83-279 1-180 (202)
283 KOG0095 GTPase Rab30, small G 99.2 3.9E-11 8.4E-16 103.1 8.6 152 81-281 6-161 (213)
284 COG0536 Obg Predicted GTPase [ 99.2 4.3E-11 9.3E-16 117.2 9.5 155 80-283 157-327 (369)
285 COG1100 GTPase SAR1 and relate 99.2 3.3E-10 7.1E-15 108.3 14.8 164 82-282 5-178 (219)
286 cd01853 Toc34_like Toc34-like 99.2 8E-10 1.7E-14 107.5 17.2 122 78-235 27-164 (249)
287 KOG0087 GTPase Rab11/YPT3, sma 99.2 7.2E-11 1.6E-15 107.9 9.1 150 82-282 14-169 (222)
288 PLN00023 GTP-binding protein; 99.2 2.5E-10 5.3E-15 113.5 13.7 144 79-258 18-189 (334)
289 PRK09435 membrane ATPase/prote 99.2 2.4E-10 5.1E-15 115.1 13.2 107 157-282 146-253 (332)
290 cd04094 selB_III This family r 99.2 2.9E-10 6.3E-15 94.3 11.4 95 387-503 1-97 (97)
291 KOG0080 GTPase Rab18, small G 99.2 1.2E-10 2.7E-15 101.4 9.2 150 81-280 10-165 (209)
292 COG5192 BMS1 GTP-binding prote 99.2 1.8E-09 3.9E-14 110.9 18.6 145 79-273 66-210 (1077)
293 PF04670 Gtr1_RagA: Gtr1/RagA 99.2 4.3E-10 9.2E-15 107.7 13.3 153 84-273 1-161 (232)
294 KOG1532 GTPase XAB1, interacts 99.1 1.1E-10 2.4E-15 110.5 8.4 201 78-282 15-257 (366)
295 KOG0093 GTPase Rab3, small G p 99.1 7.1E-11 1.5E-15 101.3 6.4 155 83-282 22-176 (193)
296 cd03688 eIF2_gamma_II eIF2_gam 99.1 5.2E-10 1.1E-14 92.4 11.2 86 308-393 2-112 (113)
297 cd03692 mtIF2_IVc mtIF2_IVc: t 99.1 8E-10 1.7E-14 89.0 10.6 75 314-390 3-82 (84)
298 KOG0086 GTPase Rab4, small G p 99.1 2.5E-10 5.4E-15 98.6 8.0 150 82-280 9-162 (214)
299 COG4917 EutP Ethanolamine util 99.1 2.4E-10 5.2E-15 95.7 7.6 133 83-281 2-138 (148)
300 cd01899 Ygr210 Ygr210 subfamil 99.1 1.6E-09 3.5E-14 109.0 15.0 36 160-195 69-111 (318)
301 KOG0090 Signal recognition par 99.1 1.1E-09 2.4E-14 100.4 12.5 156 81-279 37-229 (238)
302 PF03029 ATP_bind_1: Conserved 99.1 3.8E-10 8.2E-15 109.1 8.7 113 161-281 92-229 (238)
303 PRK13768 GTPase; Provisional 99.1 1.4E-09 3E-14 106.4 12.5 111 159-282 96-240 (253)
304 PTZ00099 rab6; Provisional 99.0 9.1E-10 2E-14 101.8 9.9 106 158-282 27-135 (176)
305 KOG0079 GTP-binding protein H- 99.0 6.1E-10 1.3E-14 95.7 7.4 151 83-281 9-161 (198)
306 KOG0088 GTPase Rab21, small G 99.0 6.9E-10 1.5E-14 96.4 7.7 157 81-282 12-168 (218)
307 TIGR00073 hypB hydrogenase acc 99.0 1.7E-09 3.8E-14 102.6 10.2 99 159-282 102-200 (207)
308 TIGR00750 lao LAO/AO transport 99.0 3.6E-09 7.8E-14 106.3 12.6 103 157-282 124-231 (300)
309 TIGR00991 3a0901s02IAP34 GTP-b 99.0 1E-08 2.2E-13 101.5 14.0 119 79-233 35-166 (313)
310 TIGR02836 spore_IV_A stage IV 99.0 9.4E-09 2E-13 104.0 13.8 136 78-232 13-192 (492)
311 KOG0071 GTP-binding ADP-ribosy 99.0 1.4E-08 3E-13 86.7 12.7 150 80-279 15-168 (180)
312 PTZ00258 GTP-binding protein; 99.0 8.7E-09 1.9E-13 105.8 13.6 84 80-194 19-126 (390)
313 PRK09602 translation-associate 98.9 1.5E-08 3.2E-13 105.1 15.4 36 160-195 72-114 (396)
314 smart00053 DYNc Dynamin, GTPas 98.9 8.4E-09 1.8E-13 99.4 10.4 66 160-233 125-205 (240)
315 PF05049 IIGP: Interferon-indu 98.9 6.6E-09 1.4E-13 105.5 9.9 148 80-273 33-200 (376)
316 KOG0395 Ras-related GTPase [Ge 98.9 1E-08 2.2E-13 96.1 10.5 155 81-282 2-158 (196)
317 PF04548 AIG1: AIG1 family; I 98.9 3.3E-08 7.2E-13 94.2 13.8 139 83-258 1-155 (212)
318 KOG0097 GTPase Rab14, small G 98.9 2.3E-08 4.9E-13 85.3 10.7 146 82-280 11-164 (215)
319 PF00350 Dynamin_N: Dynamin fa 98.9 7.3E-09 1.6E-13 94.7 8.2 66 158-230 99-168 (168)
320 KOG2486 Predicted GTPase [Gene 98.8 1.7E-08 3.7E-13 96.3 9.7 161 79-281 133-308 (320)
321 KOG0091 GTPase Rab39, small G 98.8 2E-08 4.4E-13 87.9 9.0 147 83-282 9-166 (213)
322 PF03144 GTP_EFTU_D2: Elongati 98.8 1.6E-08 3.5E-13 79.3 7.8 68 324-391 1-74 (74)
323 KOG0077 Vesicle coat complex C 98.8 3.8E-08 8.3E-13 86.6 10.5 157 80-279 18-183 (193)
324 KOG0074 GTP-binding ADP-ribosy 98.8 4.1E-08 8.9E-13 84.0 9.7 154 79-281 14-171 (185)
325 KOG0072 GTP-binding ADP-ribosy 98.8 1.2E-08 2.7E-13 87.5 6.5 152 81-281 17-171 (182)
326 cd01342 Translation_Factor_II_ 98.8 6.1E-08 1.3E-12 76.6 10.1 78 312-391 1-82 (83)
327 PRK10463 hydrogenase nickel in 98.8 3E-08 6.5E-13 97.5 9.5 99 158-281 183-281 (290)
328 PF03308 ArgK: ArgK protein; 98.7 3.2E-08 7E-13 94.6 8.6 171 79-282 26-223 (266)
329 TIGR00993 3a0901s04IAP86 chlor 98.7 1.9E-07 4.1E-12 99.8 13.9 118 81-234 117-250 (763)
330 KOG0081 GTPase Rab27, small G 98.7 2.5E-08 5.4E-13 86.9 5.8 105 160-282 67-174 (219)
331 COG1703 ArgK Putative periplas 98.7 1E-07 2.2E-12 92.3 10.4 104 158-283 142-248 (323)
332 KOG0410 Predicted GTP binding 98.7 5E-08 1.1E-12 94.9 8.2 145 79-282 175-334 (410)
333 KOG3886 GTP-binding protein [S 98.7 5.5E-08 1.2E-12 90.3 7.8 153 82-273 4-163 (295)
334 TIGR00101 ureG urease accessor 98.7 5.3E-08 1.2E-12 91.7 7.4 99 159-282 91-189 (199)
335 cd01900 YchF YchF subfamily. 98.7 4.7E-08 1E-12 96.1 7.2 80 85-195 1-104 (274)
336 KOG0083 GTPase Rab26/Rab37, sm 98.7 8.1E-09 1.8E-13 87.3 1.5 104 158-280 45-151 (192)
337 PF14578 GTP_EFTU_D4: Elongati 98.6 3.6E-07 7.8E-12 71.8 10.2 75 310-390 3-79 (81)
338 PRK09601 GTP-binding protein Y 98.6 1E-07 2.2E-12 96.8 8.8 82 83-195 3-108 (364)
339 PF00735 Septin: Septin; Inte 98.6 7E-07 1.5E-11 88.5 13.4 142 82-259 4-177 (281)
340 KOG1486 GTP-binding protein DR 98.5 3.3E-07 7.2E-12 86.1 8.1 88 79-197 59-153 (364)
341 KOG4252 GTP-binding protein [S 98.4 3.8E-08 8.2E-13 87.5 0.1 155 80-282 18-174 (246)
342 COG0378 HypB Ni2+-binding GTPa 98.4 2.8E-06 6.1E-11 77.7 12.2 94 160-280 97-192 (202)
343 KOG1490 GTP-binding protein CR 98.4 9.7E-07 2.1E-11 90.5 10.0 153 80-280 166-332 (620)
344 cd04092 mtEFG2_II_like mtEFG2_ 98.4 1.6E-06 3.4E-11 69.7 9.3 75 314-392 3-83 (83)
345 cd03690 Tet_II Tet_II: This su 98.4 1.4E-06 3E-11 70.3 8.8 77 310-391 2-84 (85)
346 cd04088 EFG_mtEFG_II EFG_mtEFG 98.4 2E-06 4.3E-11 69.0 9.4 75 314-392 3-83 (83)
347 KOG1707 Predicted Ras related/ 98.4 9.4E-07 2E-11 92.3 8.2 158 78-281 5-167 (625)
348 cd03699 lepA_II lepA_II: This 98.4 4.4E-06 9.6E-11 67.5 10.3 80 312-392 1-86 (86)
349 cd01858 NGP_1 NGP-1. Autoanti 98.3 6.4E-07 1.4E-11 81.1 5.6 57 81-170 101-157 (157)
350 cd03691 BipA_TypA_II BipA_TypA 98.3 4.8E-06 1E-10 67.3 10.1 76 312-391 1-85 (86)
351 PRK14974 cell division protein 98.3 9.7E-06 2.1E-10 82.1 14.4 94 158-280 221-321 (336)
352 KOG1673 Ras GTPases [General f 98.3 3.2E-06 6.9E-11 73.7 8.9 159 79-281 17-178 (205)
353 KOG0448 Mitofusin 1 GTPase, in 98.3 7.2E-06 1.6E-10 87.3 13.2 65 161-233 207-274 (749)
354 cd04091 mtEFG1_II_like mtEFG1_ 98.3 6.6E-06 1.4E-10 65.7 9.5 73 315-392 4-81 (81)
355 cd01851 GBP Guanylate-binding 98.3 9.9E-06 2.1E-10 77.8 12.5 120 79-232 4-146 (224)
356 cd04178 Nucleostemin_like Nucl 98.3 9.9E-07 2.1E-11 81.1 5.4 58 80-170 115-172 (172)
357 PRK10416 signal recognition pa 98.3 1.2E-05 2.7E-10 81.1 13.7 95 158-281 195-302 (318)
358 cd01859 MJ1464 MJ1464. This f 98.3 3.9E-06 8.5E-11 75.7 9.0 82 179-282 8-89 (156)
359 KOG3883 Ras family small GTPas 98.2 4E-05 8.6E-10 66.9 13.9 146 80-279 7-165 (198)
360 cd03689 RF3_II RF3_II: this su 98.2 8.6E-06 1.9E-10 65.6 9.3 67 322-392 14-84 (85)
361 TIGR00064 ftsY signal recognit 98.2 2E-05 4.4E-10 77.8 13.9 94 158-280 153-259 (272)
362 KOG0393 Ras-related small GTPa 98.2 3.6E-06 7.7E-11 77.9 7.4 158 81-282 3-172 (198)
363 COG5019 CDC3 Septin family pro 98.2 2.2E-05 4.8E-10 78.5 13.3 145 80-259 21-197 (373)
364 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 8.7E-06 1.9E-10 72.3 9.5 80 175-276 3-84 (141)
365 TIGR01425 SRP54_euk signal rec 98.2 1.1E-05 2.4E-10 83.9 11.6 64 158-232 181-251 (429)
366 cd01856 YlqF YlqF. Proteins o 98.2 6.9E-06 1.5E-10 75.5 8.2 91 168-282 3-94 (171)
367 cd01858 NGP_1 NGP-1. Autoanti 98.2 7E-06 1.5E-10 74.3 8.1 84 178-282 3-88 (157)
368 cd01849 YlqF_related_GTPase Yl 98.1 2.7E-06 5.9E-11 76.8 5.2 58 80-170 98-155 (155)
369 KOG1487 GTP-binding protein DR 98.1 2.7E-06 5.9E-11 80.4 5.3 85 82-197 59-150 (358)
370 KOG1547 Septin CDC10 and relat 98.1 6.5E-05 1.4E-09 70.5 13.6 143 81-259 45-219 (336)
371 cd01855 YqeH YqeH. YqeH is an 98.1 9.4E-06 2E-10 75.8 8.1 96 172-282 23-118 (190)
372 TIGR03596 GTPase_YlqF ribosome 98.0 1.8E-05 3.9E-10 78.5 8.4 91 168-282 5-96 (276)
373 PF00448 SRP54: SRP54-type pro 98.0 4.3E-05 9.4E-10 71.7 10.4 66 158-233 82-153 (196)
374 cd01855 YqeH YqeH. YqeH is an 98.0 7.8E-06 1.7E-10 76.4 4.9 64 82-170 127-190 (190)
375 PRK11889 flhF flagellar biosyn 98.0 4.3E-05 9.4E-10 78.0 10.4 65 159-233 320-390 (436)
376 TIGR00157 ribosome small subun 98.0 1.2E-05 2.6E-10 78.3 6.0 85 179-282 32-116 (245)
377 cd03115 SRP The signal recogni 97.9 7.9E-05 1.7E-09 68.4 10.9 65 158-233 81-152 (173)
378 PRK09563 rbgA GTPase YlqF; Rev 97.9 1.5E-05 3.2E-10 79.6 6.2 58 80-170 119-176 (287)
379 cd03700 eEF2_snRNP_like_II EF2 97.9 9.1E-05 2E-09 60.8 9.7 66 322-391 14-92 (93)
380 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 1.1E-05 2.4E-10 71.6 4.5 21 84-104 85-105 (141)
381 cd01849 YlqF_related_GTPase Yl 97.9 2.7E-05 5.9E-10 70.3 7.0 77 185-282 1-78 (155)
382 COG1161 Predicted GTPases [Gen 97.9 1.1E-05 2.4E-10 81.6 4.9 58 80-170 130-187 (322)
383 PF03193 DUF258: Protein of un 97.9 6.4E-06 1.4E-10 74.2 2.7 23 83-105 36-58 (161)
384 TIGR03596 GTPase_YlqF ribosome 97.9 1.6E-05 3.6E-10 78.9 5.6 58 80-170 116-173 (276)
385 KOG3905 Dynein light intermedi 97.9 0.00014 3.1E-09 71.1 11.7 58 215-279 218-280 (473)
386 KOG0096 GTPase Ran/TC4/GSP1 (n 97.9 5.6E-05 1.2E-09 68.4 8.3 148 80-280 8-160 (216)
387 cd01856 YlqF YlqF. Proteins o 97.9 1.9E-05 4.2E-10 72.5 5.6 57 81-170 114-170 (171)
388 PRK12289 GTPase RsgA; Reviewed 97.9 3.8E-05 8.2E-10 78.5 8.1 82 181-282 87-168 (352)
389 cd03114 ArgK-like The function 97.9 8.5E-05 1.8E-09 66.5 9.3 59 158-231 90-148 (148)
390 KOG1954 Endocytosis/signaling 97.8 0.00012 2.6E-09 72.8 10.8 132 82-232 58-223 (532)
391 PRK14722 flhF flagellar biosyn 97.8 9.9E-05 2.1E-09 75.7 10.5 67 157-233 213-294 (374)
392 PRK12288 GTPase RsgA; Reviewed 97.8 1.5E-05 3.2E-10 81.4 4.5 22 84-105 207-228 (347)
393 PRK00098 GTPase RsgA; Reviewed 97.8 3.6E-05 7.9E-10 77.2 7.2 82 181-281 78-159 (298)
394 PRK09563 rbgA GTPase YlqF; Rev 97.8 5.1E-05 1.1E-09 75.8 8.0 92 167-282 7-99 (287)
395 KOG2655 Septin family protein 97.8 0.00022 4.7E-09 72.0 11.6 143 81-258 20-192 (366)
396 COG0012 Predicted GTPase, prob 97.8 5.7E-05 1.2E-09 76.0 7.3 36 160-195 67-109 (372)
397 TIGR00157 ribosome small subun 97.8 2.6E-05 5.6E-10 76.0 4.7 23 83-105 121-143 (245)
398 TIGR00092 GTP-binding protein 97.8 7.2E-05 1.6E-09 76.3 7.9 36 160-195 67-109 (368)
399 cd03702 IF2_mtIF2_II This fami 97.7 0.00015 3.3E-09 59.4 8.1 74 313-391 2-78 (95)
400 PRK00771 signal recognition pa 97.7 0.00016 3.4E-09 75.9 10.3 63 159-232 175-244 (437)
401 PRK12289 GTPase RsgA; Reviewed 97.7 3.1E-05 6.7E-10 79.1 4.9 22 84-105 174-195 (352)
402 cd03112 CobW_like The function 97.7 0.00017 3.7E-09 65.4 8.1 22 84-105 2-23 (158)
403 PF05783 DLIC: Dynein light in 97.7 0.00021 4.6E-09 75.5 10.0 56 218-280 195-255 (472)
404 cd04090 eEF2_II_snRNP Loc2 eEF 97.7 0.00045 9.7E-09 56.8 9.9 66 314-381 3-84 (94)
405 COG1419 FlhF Flagellar GTP-bin 97.7 0.00024 5.3E-09 72.5 10.0 131 81-233 202-351 (407)
406 KOG3887 Predicted small GTPase 97.6 9.4E-05 2E-09 69.5 6.0 155 83-274 28-188 (347)
407 TIGR03597 GTPase_YqeH ribosome 97.6 7.2E-05 1.6E-09 77.1 5.7 61 83-171 155-215 (360)
408 TIGR00487 IF-2 translation ini 97.6 0.00068 1.5E-08 74.1 13.4 181 163-392 390-576 (587)
409 PRK12724 flagellar biosynthesi 97.6 0.00015 3.3E-09 75.0 7.8 66 158-233 298-372 (432)
410 PRK14721 flhF flagellar biosyn 97.6 0.00028 6.1E-09 73.5 9.7 66 157-233 267-339 (420)
411 PRK12723 flagellar biosynthesi 97.6 0.00036 7.8E-09 72.2 10.4 66 158-233 253-325 (388)
412 cd01854 YjeQ_engC YjeQ/EngC. 97.6 0.00015 3.2E-09 72.4 7.1 80 181-280 76-155 (287)
413 cd03703 aeIF5B_II aeIF5B_II: T 97.6 0.00045 9.8E-09 57.8 8.6 76 313-390 2-92 (110)
414 PRK10867 signal recognition pa 97.6 0.00044 9.5E-09 72.5 10.5 64 158-232 182-252 (433)
415 PRK12726 flagellar biosynthesi 97.5 0.00037 8E-09 71.1 9.4 66 158-233 284-355 (407)
416 PRK13796 GTPase YqeH; Provisio 97.5 8.9E-05 1.9E-09 76.5 5.1 62 82-171 160-221 (365)
417 PRK05306 infB translation init 97.5 0.0014 3.1E-08 73.5 14.8 180 164-392 593-778 (787)
418 CHL00189 infB translation init 97.5 0.0014 3E-08 73.0 14.4 182 162-392 546-732 (742)
419 PRK12727 flagellar biosynthesi 97.5 0.00045 9.7E-09 73.4 10.1 64 158-232 427-496 (559)
420 COG3640 CooC CO dehydrogenase 97.5 0.00031 6.6E-09 66.3 7.9 65 158-232 132-197 (255)
421 COG0552 FtsY Signal recognitio 97.5 0.0013 2.9E-08 65.4 12.6 129 79-232 136-296 (340)
422 COG1162 Predicted GTPases [Gen 97.5 9.1E-05 2E-09 72.9 4.5 22 83-104 165-186 (301)
423 KOG2485 Conserved ATP/GTP bind 97.5 0.00013 2.8E-09 71.4 5.4 66 79-169 140-205 (335)
424 cd01859 MJ1464 MJ1464. This f 97.5 0.00013 2.9E-09 65.6 5.2 23 81-103 100-122 (156)
425 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00013 2.8E-09 72.8 5.3 23 83-105 162-184 (287)
426 cd03701 IF2_IF5B_II IF2_IF5B_I 97.5 0.00064 1.4E-08 55.9 8.2 60 313-374 2-64 (95)
427 TIGR00959 ffh signal recogniti 97.5 0.00024 5.3E-09 74.4 7.1 64 158-232 181-251 (428)
428 TIGR03597 GTPase_YqeH ribosome 97.5 0.00027 5.8E-09 72.9 7.2 97 170-282 50-146 (360)
429 PRK06731 flhF flagellar biosyn 97.4 0.00047 1E-08 67.8 8.3 65 159-233 154-224 (270)
430 PRK05703 flhF flagellar biosyn 97.4 0.00074 1.6E-08 71.0 9.9 65 158-232 298-369 (424)
431 PRK01889 GTPase RsgA; Reviewed 97.4 0.00065 1.4E-08 69.9 8.8 79 181-280 110-188 (356)
432 COG0541 Ffh Signal recognition 97.4 0.0014 3E-08 67.4 10.7 134 79-232 97-251 (451)
433 cd03111 CpaE_like This protein 97.3 0.0014 3E-08 55.1 9.0 60 161-229 44-106 (106)
434 PRK12288 GTPase RsgA; Reviewed 97.3 0.00071 1.5E-08 69.2 8.6 83 181-281 118-200 (347)
435 KOG1491 Predicted GTP-binding 97.3 0.00043 9.4E-09 68.4 6.6 85 80-195 18-126 (391)
436 cd02036 MinD Bacterial cell di 97.3 0.0024 5.3E-08 58.5 11.4 63 161-232 64-126 (179)
437 cd02038 FleN-like FleN is a me 97.3 0.0027 5.9E-08 56.1 11.1 64 160-232 45-109 (139)
438 PRK00098 GTPase RsgA; Reviewed 97.3 0.00029 6.3E-09 70.7 4.9 24 82-105 164-187 (298)
439 COG0532 InfB Translation initi 97.3 0.0075 1.6E-07 63.5 15.2 181 163-391 311-496 (509)
440 KOG0780 Signal recognition par 97.3 0.0011 2.5E-08 66.5 8.6 66 155-232 179-252 (483)
441 cd00066 G-alpha G protein alph 97.2 0.0018 3.9E-08 65.6 9.6 134 144-280 145-302 (317)
442 PRK13796 GTPase YqeH; Provisio 97.2 0.0016 3.6E-08 67.2 9.3 94 172-282 58-152 (365)
443 KOG0447 Dynamin-like GTP bindi 97.1 0.0048 1E-07 64.4 12.1 99 143-247 392-507 (980)
444 PF02492 cobW: CobW/HypB/UreG, 97.1 0.00054 1.2E-08 63.3 4.8 66 159-233 84-154 (178)
445 PRK11537 putative GTP-binding 97.1 0.006 1.3E-07 61.7 12.4 25 81-105 3-27 (318)
446 PRK14723 flhF flagellar biosyn 97.1 0.0013 2.8E-08 73.0 7.7 23 82-104 185-207 (767)
447 PRK06995 flhF flagellar biosyn 97.1 0.00023 5E-09 75.3 1.7 66 157-232 332-403 (484)
448 KOG4423 GTP-binding protein-li 97.0 7.3E-05 1.6E-09 67.5 -1.9 153 82-281 25-186 (229)
449 smart00275 G_alpha G protein a 97.0 0.0023 4.9E-08 65.5 8.8 87 143-232 167-263 (342)
450 KOG4181 Uncharacterized conser 97.0 0.0078 1.7E-07 59.7 11.6 73 174-257 289-377 (491)
451 COG1162 Predicted GTPases [Gen 97.0 0.0027 5.8E-08 62.7 8.4 82 182-281 78-159 (301)
452 KOG1534 Putative transcription 97.0 0.0017 3.7E-08 60.1 6.5 65 160-233 98-177 (273)
453 cd03110 Fer4_NifH_child This p 97.0 0.0031 6.8E-08 58.1 8.3 65 158-232 91-155 (179)
454 TIGR00491 aIF-2 translation in 96.9 0.017 3.7E-07 63.2 14.5 76 318-393 473-550 (590)
455 KOG2484 GTPase [General functi 96.9 0.00074 1.6E-08 68.2 3.3 58 80-170 250-307 (435)
456 KOG1533 Predicted GTPase [Gene 96.8 0.0064 1.4E-07 57.4 8.8 71 158-233 95-176 (290)
457 PRK08099 bifunctional DNA-bind 96.8 0.0065 1.4E-07 63.4 10.1 31 79-109 216-246 (399)
458 PF09547 Spore_IV_A: Stage IV 96.8 0.024 5.1E-07 58.3 13.5 30 78-107 13-42 (492)
459 cd01983 Fer4_NifH The Fer4_Nif 96.8 0.0062 1.4E-07 49.2 7.7 69 85-196 2-71 (99)
460 KOG1424 Predicted GTP-binding 96.7 0.0011 2.5E-08 68.8 3.6 27 80-106 312-338 (562)
461 KOG0459 Polypeptide release fa 96.7 0.0014 3.1E-08 66.2 3.7 198 80-278 81-278 (501)
462 cd02042 ParA ParA and ParB of 96.7 0.011 2.3E-07 49.2 8.5 35 160-196 40-74 (104)
463 TIGR02475 CobW cobalamin biosy 96.6 0.021 4.5E-07 58.4 11.7 25 81-105 3-27 (341)
464 PF06858 NOG1: Nucleolar GTP-b 96.4 0.0087 1.9E-07 43.8 5.3 51 177-231 6-58 (58)
465 PRK10751 molybdopterin-guanine 96.4 0.01 2.2E-07 54.3 7.1 26 80-105 4-29 (173)
466 KOG1707 Predicted Ras related/ 96.4 0.01 2.2E-07 62.9 7.8 145 78-272 421-567 (625)
467 TIGR03348 VI_IcmF type VI secr 96.3 0.009 2E-07 70.9 8.1 22 81-102 110-131 (1169)
468 PRK13695 putative NTPase; Prov 96.3 0.012 2.6E-07 54.0 7.3 21 84-104 2-22 (174)
469 COG1618 Predicted nucleotide k 96.3 0.028 6.1E-07 50.3 9.0 24 80-103 3-26 (179)
470 KOG3859 Septins (P-loop GTPase 96.3 0.019 4.1E-07 55.4 8.4 137 80-259 40-211 (406)
471 PRK04004 translation initiatio 96.2 0.091 2E-06 57.7 14.6 75 318-392 475-551 (586)
472 KOG0082 G-protein alpha subuni 96.2 0.032 6.9E-07 56.5 10.0 135 143-280 178-335 (354)
473 KOG2423 Nucleolar GTPase [Gene 96.2 0.0019 4.2E-08 65.0 1.2 27 79-105 304-330 (572)
474 COG0523 Putative GTPases (G3E 96.1 0.028 6E-07 56.9 9.3 91 159-271 84-184 (323)
475 cd04178 Nucleostemin_like Nucl 96.1 0.016 3.4E-07 53.3 6.6 40 185-232 1-42 (172)
476 COG1341 Predicted GTPase or GT 96.0 0.017 3.7E-07 59.0 7.3 28 79-106 70-97 (398)
477 PRK14845 translation initiatio 96.0 0.12 2.5E-06 60.1 14.5 75 318-392 931-1007(1049)
478 PRK01889 GTPase RsgA; Reviewed 95.7 0.0086 1.9E-07 61.7 3.7 23 83-105 196-218 (356)
479 PF09173 eIF2_C: Initiation fa 95.7 0.17 3.6E-06 40.7 10.1 75 401-503 2-88 (88)
480 PHA00729 NTP-binding motif con 95.7 0.012 2.6E-07 56.1 4.1 26 81-106 16-41 (226)
481 KOG2743 Cobalamin synthesis pr 95.5 0.15 3.3E-06 50.0 11.1 27 78-104 53-79 (391)
482 cd03116 MobB Molybdenum is an 95.5 0.035 7.5E-07 50.3 6.3 22 83-104 2-23 (159)
483 KOG1144 Translation initiation 95.5 0.23 5.1E-06 54.2 13.3 60 319-378 945-1007(1064)
484 PF13555 AAA_29: P-loop contai 95.4 0.017 3.7E-07 43.3 3.1 21 84-104 25-45 (62)
485 PF13207 AAA_17: AAA domain; P 95.3 0.017 3.8E-07 49.2 3.7 24 84-107 1-24 (121)
486 PF00503 G-alpha: G-protein al 95.3 0.038 8.1E-07 57.7 6.7 87 143-232 218-315 (389)
487 cd02037 MRP-like MRP (Multiple 95.3 0.051 1.1E-06 49.5 6.8 66 158-232 66-133 (169)
488 KOG2484 GTPase [General functi 95.0 0.12 2.6E-06 52.6 9.0 79 164-257 126-206 (435)
489 KOG0781 Signal recognition par 95.0 0.046 1E-06 56.7 6.0 143 78-232 374-542 (587)
490 cd03222 ABC_RNaseL_inhibitor T 95.0 0.15 3.2E-06 47.1 8.9 23 81-103 24-46 (177)
491 PRK13833 conjugal transfer pro 94.9 0.069 1.5E-06 54.0 7.0 24 82-105 144-167 (323)
492 COG3523 IcmF Type VI protein s 94.9 0.039 8.4E-07 64.2 5.7 70 158-233 172-269 (1188)
493 PF03205 MobB: Molybdopterin g 94.8 0.03 6.4E-07 49.6 3.6 22 83-104 1-22 (140)
494 cd02019 NK Nucleoside/nucleoti 94.7 0.024 5.2E-07 43.5 2.5 20 84-103 1-20 (69)
495 PF00437 T2SE: Type II/IV secr 94.6 0.049 1.1E-06 53.7 5.2 24 81-104 126-149 (270)
496 cd03238 ABC_UvrA The excision 94.6 0.028 6.1E-07 51.8 3.1 25 81-105 20-44 (176)
497 COG1763 MobB Molybdopterin-gua 94.6 0.053 1.1E-06 49.0 4.8 23 82-104 2-24 (161)
498 PF13671 AAA_33: AAA domain; P 94.5 0.036 7.8E-07 48.7 3.6 24 84-107 1-24 (143)
499 PRK07261 topology modulation p 94.5 0.035 7.5E-07 50.9 3.4 22 84-105 2-23 (171)
500 COG1116 TauB ABC-type nitrate/ 94.4 0.026 5.7E-07 54.1 2.6 21 83-103 30-50 (248)
No 1
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.4e-97 Score=730.29 Aligned_cols=423 Identities=45% Similarity=0.799 Sum_probs=409.2
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
..++++|++++||||||||||+++|+|++|.++.+.|+++++++.+.|+.||+++|+||++++||+||+|++.+...|++
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
+.+.|+|+|+|||++|+++|+.|+++||+|||||||..|.||+||..++||+||+.+++.+|+.++||++||||. .+|
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~--v~w 160 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDL--VSW 160 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccc--ccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 779
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEE
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 317 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~ 317 (513)
++++|+++++++..+++.+||+.. +++|||+||++|+|+.+..+ .++||+||||+++|+.+..|.+..++|||++|.
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~~-~v~FIPiSg~~G~Nl~~~s~--~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~ 237 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNPK-DVPFIPISGFKGDNLTKKSE--NMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQ 237 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCcc-CCeEEecccccCCcccccCc--CCcCccCChHHHHHhccCCCCCCCCCCeEeEee
Confidence 999999999999999999999854 78999999999999999763 699999999999999999999999999999999
Q ss_pred EEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEccCCC
Q 010318 318 DKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 395 (513)
Q Consensus 318 ~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~ 395 (513)
++| .+.|++..|+|++|.|++||+|++.|.+...+|++|+++++++++|.|||.|+++++++..++|++|+|++++++
T Consensus 238 ~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~~~n 317 (428)
T COG5256 238 DVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEMHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGHSDN 317 (428)
T ss_pred eEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeeecccccccCCCCCeEEEEecCCchhccCCccEeccCCC
Confidence 999 689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceE
Q 010318 396 PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 475 (513)
Q Consensus 396 ~~~~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi 475 (513)
++..+..|.|++.+++. +..|.+||+|++|+|+..++|++.+|++++|+.+|+..+++|.++++|+.+.|.+++.+|+
T Consensus 318 ~~t~s~~f~a~i~vl~~--p~~i~~Gyt~vlh~hta~~a~~~~~l~~k~d~~t~k~~~~~p~f~k~g~~~iv~i~~~kP~ 395 (428)
T COG5256 318 PPTVSPEFTAQIIVLWH--PGIITSGYTPVLHAHTAQVACRIAELLSKLDPRTGKKLEENPQFLKRGDAAIVKIEPEKPL 395 (428)
T ss_pred CcccccceEEEEEEEec--CccccCCCccEEEecccceeeeHHHHHHhhCcccccccccChhhhhcCceEEEEEEecCce
Confidence 99999999999999542 3789999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010318 476 CTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 507 (513)
Q Consensus 476 ~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~ 507 (513)
|++++++++.||||+||+.|+|||+|+|.++.
T Consensus 396 ~~e~~~~~~~Lgrfalrd~g~tIA~G~v~~v~ 427 (428)
T COG5256 396 CLEKVSEIPQLGRFALRDMGQTIAAGKVLEVK 427 (428)
T ss_pred EeeecccCCccceEEEEeCCCeEEeEEEEecc
Confidence 99999999999999999999999999999875
No 2
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=1.1e-85 Score=688.35 Aligned_cols=428 Identities=36% Similarity=0.656 Sum_probs=403.9
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++++||+++||+|||||||+++|++.+|.++.+.++++++++...|+.++.|+|++|..++|+++|+|++.+...|++.
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 57889999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
++.++|+|||||++|+++|+.|++.+|++||||||..|.||++++..+||++|+.+++.+|+|++|||+||||+...+|+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~ 163 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYS 163 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhh
Confidence 99999999999999999999999999999999999999999999888999999999999999889999999998655799
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEEE
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIID 318 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~ 318 (513)
+.+|+++.++++.++++.|+.. .+++|||+||++|+|+.+.... ++||+|++|+++|+.++.|.+..+.||||+|++
T Consensus 164 ~~~~~~i~~ei~~~l~~~g~~~-~~~~~ipiSa~~G~ni~~~~~~--~~Wy~g~tLl~~l~~i~~p~~~~~~plr~~I~~ 240 (447)
T PLN00043 164 KARYDEIVKEVSSYLKKVGYNP-DKIPFVPISGFEGDNMIERSTN--LDWYKGPTLLEALDQINEPKRPSDKPLRLPLQD 240 (447)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-ccceEEEEeccccccccccccC--CcccchHHHHHHHhhcCCCccccCCCcEEEEEE
Confidence 9999999999999999999863 3579999999999999886553 899999999999999988888889999999999
Q ss_pred EE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEccC-CC
Q 010318 319 KF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV-AK 395 (513)
Q Consensus 319 ~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~-~~ 395 (513)
+| ++.|+|+.|+|.+|.|++||+|.++|++..++|++|++++.++++|.|||+|+++|++++..++++||||+++ ++
T Consensus 241 v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~vl~~~~~~ 320 (447)
T PLN00043 241 VYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEMHHESLQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDD 320 (447)
T ss_pred EEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEECCeEeCEecCCCeEEEEECCCCHhhCCCccEEccCCCC
Confidence 99 5889999999999999999999999999999999999999999999999999999999998999999999997 46
Q ss_pred CcceeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceE
Q 010318 396 PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 475 (513)
Q Consensus 396 ~~~~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi 475 (513)
|+..+++|+|+|.||+. ..+|..||++++|+++.+++|+|.+|.+.+|+++|+..+++|++|++|+.+.|+|++.+|+
T Consensus 321 p~~~~~~F~A~i~~l~~--~~~i~~gy~~~~~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~~~~a~v~i~~~~pi 398 (447)
T PLN00043 321 PAKEAANFTSQVIIMNH--PGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPM 398 (447)
T ss_pred CCccccEEEEEEEEECC--CCCCCCCCeEEEEEccCEEEEEEEEeEEEeccCCccccccCcccccCCCEEEEEEEECCcE
Confidence 77889999999999542 2789999999999999999999999999999999988888999999999999999999999
Q ss_pred EeeecccccccceEEEEeCCeEEEEEEEEecCCCCC
Q 010318 476 CTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSS 511 (513)
Q Consensus 476 ~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~~~~~ 511 (513)
|+|+|.+++.||||+||++|.|||+|+|+++....+
T Consensus 399 ~~e~~~~~~~lGrf~lrd~~~Tva~G~v~~v~~~~~ 434 (447)
T PLN00043 399 VVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDP 434 (447)
T ss_pred EEEecccCCCCceEEEEECCCeEEEEEEEEEeccCC
Confidence 999999999999999999999999999999886543
No 3
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.8e-87 Score=648.91 Aligned_cols=427 Identities=61% Similarity=0.998 Sum_probs=416.0
Q ss_pred cCCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEE
Q 010318 77 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (513)
Q Consensus 77 ~~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~ 156 (513)
..++.+.|+.++||+|+||||+-+.|++.+|.++.+++++|++++.+.+|.+|+++|.||+..+||..|-|+.++..+|+
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010318 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 157 ~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 236 (513)
+..++++++|+|||..|+.+|+.|+++||.++||++|..|.||.||+.++||++|..+++..++.++|++|||||-+.++
T Consensus 154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn 233 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN 233 (501)
T ss_pred ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEE
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 316 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i 316 (513)
|+++||+++.+.+..+|+.+||+...+..++|+|+++|.|+.++.+ ..||||.|++++..|+.++...+..++|++++|
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~-s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI 312 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD-SVCPWYKGPIFLEYLDELPHLERILNGPIRCPV 312 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc-ccCCcccCCccceehhccCcccccCCCCEEeeh
Confidence 9999999999999999999999988899999999999999999887 789999999999999999988999999999999
Q ss_pred EEEEccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEccCCCC
Q 010318 317 IDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 396 (513)
Q Consensus 317 ~~~~~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~ 396 (513)
.+.|++.|||+.|+|.||+++.||.++++|.+..+.|.+|+.....++.+.||+.+.|.|+|+...+|..|.|||+++++
T Consensus 313 ~~KykdmGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~ddvE~~~~~pGenvk~rlkgieeedi~~GfiL~~~~n~ 392 (501)
T KOG0459|consen 313 ANKYKDMGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYSDDVETDRVAPGENVKLRLKGIEEEDISPGFILCSPNNP 392 (501)
T ss_pred hhhccccceEEEEEecccceecCCeEEEccCCcceEEEEEecccceeeeccCCcceEEEecccchhhccCceEEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeEEEEEEEEeccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceE
Q 010318 397 VAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 475 (513)
Q Consensus 397 ~~~~~~f~a~i~~~~~l~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi 475 (513)
..+.+.|.|+|.+ +.| ..|++||.+++|+|+...+|.| ++++.+|++||.+.+++|+|++.|+.+.++|+...||
T Consensus 393 ~~s~~~F~aqi~I---lE~~sIi~~GY~~VlHIht~ieEv~i-~li~~idkktg~ksKkrprFvkq~~~~iarl~t~~~i 468 (501)
T KOG0459|consen 393 CKSGRTFDAQIVI---LEHKSIICAGYSCVLHIHTAVEEVEI-KLIHLIDKKTGEKSKKRPRFVKQGQKCIARLETEGPI 468 (501)
T ss_pred cccccEEEEEEEE---EecCceeccCcceEeeeeeehhheee-eeeeeecccccccccCCCeeecCCcEEEEEEecCCcE
Confidence 9999999999999 455 7899999999999999999999 6889999999999999999999999999999999999
Q ss_pred EeeecccccccceEEEEeCCeEEEEEEEEecCC
Q 010318 476 CTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 508 (513)
Q Consensus 476 ~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~~ 508 (513)
|+++|.+||++|||.||++|+|||+|+|+++.+
T Consensus 469 Cle~fkd~pqmgRFtLRdegkTIAiGkV~kv~~ 501 (501)
T KOG0459|consen 469 CLETFKDYPQMGRFTLRDEGKTIAIGKVLKVVE 501 (501)
T ss_pred ehhhcccchhhcceEEecCCcEEEEEEEEeecC
Confidence 999999999999999999999999999999863
No 4
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=3.4e-84 Score=677.75 Aligned_cols=427 Identities=39% Similarity=0.709 Sum_probs=403.6
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++++||+++||+|||||||+++|++.+|.++.+.++++++++.+.|++++.|+|++|..++|+++|+|++.+...|+++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
++.++|||||||++|+++++++++.+|++||||||..|+||++|+.++||++|+.++..+|+|++|||+||||+..++|+
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~ 163 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYS 163 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhh
Confidence 99999999999999999999999999999999999999999999878999999999999999999999999997668899
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEEE
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIID 318 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~ 318 (513)
+.+|+++.+++..+|+.+|+.. .+++|||+||++|+|+.++.. .++||+|++|++.|+.++.|.+..+.||||+|++
T Consensus 164 ~~~~~~i~~~i~~~l~~~g~~~-~~~~~ipiSa~~g~ni~~~~~--~~~Wy~G~tL~~~l~~~~~~~~~~~~p~r~~I~~ 240 (446)
T PTZ00141 164 QERYDEIKKEVSAYLKKVGYNP-EKVPFIPISGWQGDNMIEKSD--NMPWYKGPTLLEALDTLEPPKRPVDKPLRLPLQD 240 (446)
T ss_pred HHHHHHHHHHHHHHHHhcCCCc-ccceEEEeecccCCCcccCCC--CCcccchHHHHHHHhCCCCCCcCCCCCeEEEEEE
Confidence 9999999999999999999862 368999999999999987654 4899999999999999888888889999999999
Q ss_pred EE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEccCC-C
Q 010318 319 KF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA-K 395 (513)
Q Consensus 319 ~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~-~ 395 (513)
+| ++.|++++|+|.+|+|++||+|+++|++..++|++|++++.++++|.|||+|+++|++++..++++||||++++ .
T Consensus 241 v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~vl~~~~~~ 320 (446)
T PTZ00141 241 VYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEMHHEQLAEAVPGDNVGFNVKNVSVKDIKRGYVASDSKND 320 (446)
T ss_pred EEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEecCcccCEECCCCEEEEEECCCCHHHcCCceEEecCCCC
Confidence 99 58899999999999999999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CcceeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceE
Q 010318 396 PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 475 (513)
Q Consensus 396 ~~~~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi 475 (513)
|+..+++|+|+|.||+. ..+|++||++++|+++.+++|+|..|.+.+|+++|+..+++|++|++|+.+.|+|++++|+
T Consensus 321 p~~~~~~f~a~i~~l~~--~~~i~~G~~~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi 398 (446)
T PTZ00141 321 PAKECADFTAQVIVLNH--PGQIKNGYTPVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKMVPTKPM 398 (446)
T ss_pred CCccceEEEEEEEEECC--CCccCCCCeEEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCce
Confidence 66789999999999652 2689999999999999999999999999999999998888999999999999999999999
Q ss_pred EeeecccccccceEEEEeCCeEEEEEEEEecCCCC
Q 010318 476 CTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVS 510 (513)
Q Consensus 476 ~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~~~~ 510 (513)
|+++|++|+.+|||+||+.|+|+|+|.|+++....
T Consensus 399 ~~e~~~~~~~lgrfilrd~g~tva~G~I~~v~~~~ 433 (446)
T PTZ00141 399 CVEVFNEYPPLGRFAVRDMKQTVAVGVIKSVEKKE 433 (446)
T ss_pred EEeecccCCCCccEEEEECCCEEEEEEEEEEecCC
Confidence 99999999999999999999999999999987554
No 5
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-83 Score=652.64 Aligned_cols=429 Identities=37% Similarity=0.693 Sum_probs=409.0
Q ss_pred ccccCCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeE
Q 010318 74 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA 153 (513)
Q Consensus 74 ~~~~~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~ 153 (513)
+.+...+.+++++++||+|+|||||+|+|||..|.+..+.|+++++++...|+.||.|+|++|.+.+||+||+|++++..
T Consensus 169 ~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~ 248 (603)
T KOG0458|consen 169 DEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTT 248 (603)
T ss_pred ccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeE
Confidence 34445668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCC
Q 010318 154 HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 233 (513)
Q Consensus 154 ~~~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 233 (513)
.|+...+.++|+|+|||.+|+.+|+.|+.+||++||||||+.|.||+||+..+||+||+.+++.+|+.++||+|||||+
T Consensus 249 ~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~- 327 (603)
T KOG0458|consen 249 WFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDL- 327 (603)
T ss_pred EEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhhhHhhh-hhccCcccCCeeEEEeecccccccccc-cccCCCCCCCcchHHHHhhhccCCCCCCCCC
Q 010318 234 TVNWSKERYDEIESKMTPFL-KASGYNVKKDVQFLPISGLMGLNMKTR-VDKSLCPWWNGPCLFEALDRIEITPRDPNGP 311 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l-~~~g~~~~~~~~iipiSa~~g~gi~~l-~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~ 311 (513)
++|+++||++|++.+..|| +.+||. ..++.|||+|+++|+|+... .+..+..||+||+|++.|+.+..|.+...+|
T Consensus 328 -V~Wsq~RF~eIk~~l~~fL~~~~gf~-es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~~~~p~~~~~kP 405 (603)
T KOG0458|consen 328 -VSWSQDRFEEIKNKLSSFLKESCGFK-ESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDSFKIPERPIDKP 405 (603)
T ss_pred -cCccHHHHHHHHHHHHHHHHHhcCcc-cCCcceEecccccCCcccccccchhhhhhhcCChHHHHHhhccCCCCcccCC
Confidence 9999999999999999999 888987 45789999999999999987 3346789999999999999998888889999
Q ss_pred ceEEEEEEEc--cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeE
Q 010318 312 FRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 389 (513)
Q Consensus 312 ~~~~i~~~~~--~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~v 389 (513)
|++.|.++++ +.|..++|+|++|.|+.||+|+++|+...++|++|.+++.+..+|.|||.|.+.|.++..+.++.|++
T Consensus 406 l~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~g~i 485 (603)
T KOG0458|consen 406 LRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTSNDEPKTWAVAGDNVSLKLPGILPNLVQVGDI 485 (603)
T ss_pred eEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeecCCCcceeEeeCCEEEEecCccChhhccccee
Confidence 9999999995 56778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ec-cCCCCcceeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEE
Q 010318 390 LS-SVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 468 (513)
Q Consensus 390 l~-~~~~~~~~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~ 468 (513)
++ .++.+.+.+..|.+++.||+. +.||..|.+..+|+|+..++|++.++...+++.||+..++.|++|..|+.|.++
T Consensus 486 ~~~~~~~~i~~~~~f~~~~~~f~~--~~Pi~~g~~l~l~~~~~~~pa~~~~l~~~~~k~t~~i~kk~pR~L~~~~~a~ve 563 (603)
T KOG0458|consen 486 ADSGPQFPISKTTRFVARITTFDI--NLPITKGSPLILHFGSLSEPAVLKKLTSSINKSTGEIVKKKPRCLTSNQSAIVE 563 (603)
T ss_pred eecCCCccccceeEEEEEEEEeec--cccccCCcceEEEeccccchhhhhhhhhhhccCCCchhhcccceeccCceeeee
Confidence 99 777888888999999999874 578889999999999999999999999999999999999999999999999999
Q ss_pred EEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010318 469 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 507 (513)
Q Consensus 469 ~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~ 507 (513)
++..+|||++.|.+++++|||+||..|+|||+|+|+++.
T Consensus 564 le~~~pI~~etf~~~~~lgr~vlr~~g~TiAaG~V~~i~ 602 (603)
T KOG0458|consen 564 LETERPICLETFAENRALGRVVLRKSGSTIAAGKVTEII 602 (603)
T ss_pred ccccCchhhhhhhhchhheeEEEeccCceeeeeeEEeec
Confidence 999999999999999999999999999999999999874
No 6
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=2e-79 Score=643.56 Aligned_cols=417 Identities=38% Similarity=0.705 Sum_probs=391.9
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++++||+++||+|||||||+|+|++..|.++.+.++++++++.+.|+.++.++|++|..++|+++|+|++.....|+++
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCC--CcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK--GEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~--g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 236 (513)
++.++|+|||||++|.++++.+++.+|++|||||+.+ +. .+|+++|+.++..++++++||++||||+ .+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~-------~~~~~~~~~~~~~~~~~~iivviNK~Dl--~~ 153 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGV-------MPQTREHVFLARTLGINQLIVAINKMDA--VN 153 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCC-------CcchHHHHHHHHHcCCCeEEEEEEcccc--cc
Confidence 9999999999999999999999999999999999998 63 4799999999999998779999999999 56
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEE
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 316 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i 316 (513)
|++.+++.+.+++..+++..++.. ..++++|+||++|.|+.++.+. ++||+|++|+++|+.++.+.+..+.||+|+|
T Consensus 154 ~~~~~~~~~~~~i~~~l~~~g~~~-~~~~ii~iSA~~g~gi~~~~~~--~~wy~g~~L~~~l~~~~~~~~~~~~p~r~~i 230 (425)
T PRK12317 154 YDEKRYEEVKEEVSKLLKMVGYKP-DDIPFIPVSAFEGDNVVKKSEN--MPWYNGPTLLEALDNLKPPEKPTDKPLRIPI 230 (425)
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCc-CcceEEEeecccCCCccccccC--CCcccHHHHHHHHhcCCCCccccCCCcEEEE
Confidence 777888899999999999888752 2478999999999999998764 8999999999999999888888899999999
Q ss_pred EEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEccCC
Q 010318 317 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (513)
Q Consensus 317 ~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (513)
+++| ++.|+|++|+|.+|+|++||+|+++|++..++|++|+.++.+++.|.||++|+++|++++..++++||+|++++
T Consensus 231 ~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~ 310 (425)
T PRK12317 231 QDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEMHHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPD 310 (425)
T ss_pred EEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEECCcccCEECCCCeEEEEECCCCHHHccCccEecCCC
Confidence 9999 68999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcceeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcce
Q 010318 395 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 474 (513)
Q Consensus 395 ~~~~~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~p 474 (513)
+++..+++|+|+|.||+. ..+|++||++++|+++.+++|+|.+|.+.+|+++++..+++|++|++|+.+.|+|+|.+|
T Consensus 311 ~~~~~~~~f~a~v~~l~~--~~~i~~G~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p 388 (425)
T PRK12317 311 NPPTVAEEFTAQIVVLQH--PSAITVGYTPVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKP 388 (425)
T ss_pred CCCCcccEEEEEEEEECC--CCcCCCCCeEEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCe
Confidence 888889999999999542 268999999999999999999999999999999999888899999999999999999999
Q ss_pred EEeeecccccccceEEEEeCCeEEEEEEEEecCCC
Q 010318 475 ICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 509 (513)
Q Consensus 475 i~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~~~ 509 (513)
+|+++|++++.+|||+||++|+|+|+|+|+++.+.
T Consensus 389 ~~~~~~~~~~~lgrfilr~~g~tv~~G~i~~v~~~ 423 (425)
T PRK12317 389 LVIEKVKEIPQLGRFAIRDMGQTIAAGMVIDVKPA 423 (425)
T ss_pred eEEEeCCcCCCCccEEEEECCCeEEEEEEEEeccC
Confidence 99999999999999999999999999999998764
No 7
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=1.9e-78 Score=636.11 Aligned_cols=420 Identities=38% Similarity=0.694 Sum_probs=393.2
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++.++|+++||+|||||||+++|++.+|.++.+.++++++++...|+.++.|+|++|..++|+++|+|++.....|.++
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
++.++|+|||||++|.+++..+++.+|++|||||++++.++ ...|+.+|+.+++.++++++||++||+|+ .+|+
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~----~~~~t~~~~~~~~~~~~~~iIVviNK~Dl--~~~~ 157 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFE----VQPQTREHAFLARTLGINQLIVAINKMDS--VNYD 157 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcc----cCCchHHHHHHHHHcCCCeEEEEEEChhc--cCcc
Confidence 99999999999999999999999999999999999998543 34789999999999998779999999999 6778
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEEE
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIID 318 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~ 318 (513)
+++++.+.+++..+++..++.. ..++++|+||++|.|+.++... ++||+|++|++.|+.++++.+..+.||+|+|++
T Consensus 158 ~~~~~~~~~ei~~~~~~~g~~~-~~~~~i~iSA~~g~ni~~~~~~--~~w~~g~~l~~~l~~~~~~~~~~~~p~r~~i~~ 234 (426)
T TIGR00483 158 EEEFEAIKKEVSNLIKKVGYNP-DTVPFIPISAWNGDNVIKKSEN--TPWYKGKTLLEALDALEPPEKPTDKPLRIPIQD 234 (426)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-ccceEEEeeccccccccccccC--CccccchHHHHHHhcCCCCCCccCCCcEEEEEE
Confidence 8889999999999999888752 2479999999999999997654 899999999999999988888888999999999
Q ss_pred EE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEccCCCC
Q 010318 319 KF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 396 (513)
Q Consensus 319 ~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~ 396 (513)
+| +|.|+|++|+|.+|+|++||+|+++|.+..++|++|++++.++++|.||++|+++|++++..++++||+|++++.+
T Consensus 235 v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~~ 314 (426)
T TIGR00483 235 VYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEMHHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDNP 314 (426)
T ss_pred EEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEECCcccCEEcCCCEEEEEECCCChhhcccceEEecCCCC
Confidence 99 5889999999999999999999999999999999999999999999999999999999999999999999999878
Q ss_pred cceeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEE
Q 010318 397 VAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 476 (513)
Q Consensus 397 ~~~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~ 476 (513)
++.+++|+|++.||+. ..+|..||++++|+++.+++|+|.+|.+.+|+++++..+++|++|++|+.+.|+|+|++|+|
T Consensus 315 ~~~~~~f~a~v~~l~~--~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~ 392 (426)
T TIGR00483 315 PKVAKEFTAQIVVLQH--PGAITVGYTPVFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPMV 392 (426)
T ss_pred CceeeEEEEEEEEECC--CCccCCCCeEEEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCeeE
Confidence 8889999999999542 26899999999999999999999999999999999988899999999999999999999999
Q ss_pred eeecccccccceEEEEeCCeEEEEEEEEecCCC
Q 010318 477 TEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 509 (513)
Q Consensus 477 ~e~~~~~~~lgrfilr~~g~tva~G~V~~~~~~ 509 (513)
+++|++++.+|||+||+.|+|||+|+|+++..+
T Consensus 393 ~e~~~~~~~~grf~lr~~g~tv~~G~v~~~~~~ 425 (426)
T TIGR00483 393 IEAVKEIPPLGRFAIRDMGQTVAAGMIIDVDPT 425 (426)
T ss_pred EeecccCCCCccEEEEECCCEEEEEEEEEeeec
Confidence 999999999999999999999999999988753
No 8
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-76 Score=564.24 Aligned_cols=409 Identities=31% Similarity=0.505 Sum_probs=380.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcC--ccchhhhhhccCchhhhhcCcEEEeeeEEEE
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKS--RESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g--~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~ 156 (513)
.+..+++..+|+||.|||||+|+|||++..+.++++..+++.+...| ...+.++.++|..+.||++||||++++.+|.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 46789999999999999999999999999999999999988886444 4567899999999999999999999999999
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010318 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 157 ~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 236 (513)
++.++|.+.|||||+.|.++|..|++.||++|++|||.+|+. .||++|..++..+|++|+||++||||+ ++
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl-------~QTrRHs~I~sLLGIrhvvvAVNKmDL--vd 153 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVL-------EQTRRHSFIASLLGIRHVVVAVNKMDL--VD 153 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhH-------HHhHHHHHHHHHhCCcEEEEEEeeecc--cc
Confidence 999999999999999999999999999999999999999976 599999999999999999999999999 99
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEE
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 316 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i 316 (513)
|++++|++|..+...|.+++|+. ...+||+||+.|+|+...++ .+|||+||+|++.|+.+........++|||+|
T Consensus 154 y~e~~F~~I~~dy~~fa~~L~~~---~~~~IPiSAl~GDNV~~~s~--~mpWY~GptLLe~LE~v~i~~~~~~~~~RfPV 228 (431)
T COG2895 154 YSEEVFEAIVADYLAFAAQLGLK---DVRFIPISALLGDNVVSKSE--NMPWYKGPTLLEILETVEIADDRSAKAFRFPV 228 (431)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCC---cceEEechhccCCccccccc--CCCcccCccHHHHHhhccccccccccceeece
Confidence 99999999999999999999987 56999999999999998754 59999999999999999887777888999999
Q ss_pred EEEEc-cC-CeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEccCC
Q 010318 317 IDKFK-DM-GTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (513)
Q Consensus 317 ~~~~~-~~-G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (513)
+.+.+ +. =+-+.|+|.+|++++||.|+++|+++..+|++|..+...+.+|.+|+.|++.|. +..+++||++|++.+
T Consensus 229 Q~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~~~~A~aG~aVtl~L~--deidisRGd~i~~~~ 306 (431)
T COG2895 229 QYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGELAQASAGEAVTLVLA--DEIDISRGDLIVAAD 306 (431)
T ss_pred EEecCCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCCchhhccCCceEEEEEc--ceeecccCcEEEccC
Confidence 99984 22 122889999999999999999999999999999999999999999999999998 778899999999999
Q ss_pred CCcceeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcce
Q 010318 395 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 474 (513)
Q Consensus 395 ~~~~~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~p 474 (513)
.+|..++.|.|.+.| +...++.+|..+.+.+++..+.++|..|.+.+|.+|.+.. ..+.|..|+.+.|++.++.|
T Consensus 307 ~~~~~~~~f~A~vvW---m~~~pl~pGr~Y~lK~~t~~v~a~V~~i~~~ldvntl~~~--~a~~l~lN~Ig~v~i~~~~p 381 (431)
T COG2895 307 APPAVADAFDADVVW---MDEEPLLPGRSYDLKIATRTVRARVEEIKHQLDVNTLEQE--GAESLPLNEIGRVRISFDKP 381 (431)
T ss_pred CCcchhhhcceeEEE---ecCCCCCCCceEEEEecceEEEEEeeeeEEEEeccccccc--cccccCCCcceEEEEecCCc
Confidence 999999999999999 5567889999999999999999999999999999988755 67889999999999999999
Q ss_pred EEeeecccccccceEEEEeC--CeEEEEEEEEecCC
Q 010318 475 ICTEKFADFAQLGRFTLRTE--GKTVAVGKVTELPT 508 (513)
Q Consensus 475 i~~e~~~~~~~lgrfilr~~--g~tva~G~V~~~~~ 508 (513)
+++++|.+++.+|+|||.|. +.|+|+|+|.+-..
T Consensus 382 i~fd~Y~~N~atG~FIlID~~tn~TVgaGmI~~~l~ 417 (431)
T COG2895 382 IAFDAYAENRATGSFILIDRLTNGTVGAGMILASLS 417 (431)
T ss_pred eeecccccCcccccEEEEEcCCCCceeceeeechhh
Confidence 99999999999999999885 78999999997553
No 9
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1.1e-74 Score=610.42 Aligned_cols=410 Identities=28% Similarity=0.443 Sum_probs=376.3
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCcc--chhhhhhccCchhhhhcCcEEEeeeEEE
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRE--SWYMAYIMDTNEEERIKGKTVEVGRAHF 155 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~--s~~~~~~~d~~~~e~~~giTi~~~~~~~ 155 (513)
..++.++|+++||+|||||||+++||+.+|.++.+.+.++++++...|++ ++.++|++|..++|+++|+|++.+...|
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 35678999999999999999999999999999999999999999999986 7899999999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC
Q 010318 156 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 156 ~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 235 (513)
++++++++|||||||++|.+++..++..+|++||||||..|+. .||++|+.++..++++++||++||||+ .
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~-------~qt~~~~~l~~~lg~~~iIvvvNKiD~--~ 173 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL-------DQTRRHSFIATLLGIKHLVVAVNKMDL--V 173 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------ccchHHHHHHHHhCCCceEEEEEeecc--c
Confidence 9999999999999999999999999999999999999999954 699999999999998879999999999 6
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEE
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 315 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~ 315 (513)
+|+++++.++.+++..+++.+++. ..+++||+||++|+|+.++.. .++||+|++|+++|+.++.+.+..+.||||+
T Consensus 174 ~~~~~~~~~i~~~l~~~~~~~~~~--~~~~iipvSA~~g~ni~~~~~--~~~wy~G~tLl~~L~~i~~~~~~~~~p~r~~ 249 (474)
T PRK05124 174 DYSEEVFERIREDYLTFAEQLPGN--LDIRFVPLSALEGDNVVSQSE--SMPWYSGPTLLEVLETVDIQRVVDAQPFRFP 249 (474)
T ss_pred cchhHHHHHHHHHHHHHHHhcCCC--CCceEEEEEeecCCCcccccc--cccccchhhHHHHHhhcCCCCCCCCCCceee
Confidence 678888999999998888877742 257999999999999998765 4899999999999999988877888999999
Q ss_pred EEEEEcc--CCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEccC
Q 010318 316 IIDKFKD--MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 393 (513)
Q Consensus 316 i~~~~~~--~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~ 393 (513)
|+++++. ....+.|+|.+|+|++||+|+++|++..++|++|++++.+++.|.||++|+|+|++ ..++++|||||++
T Consensus 250 I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~~~~v~~A~aG~~V~l~L~~--~~~i~rG~VL~~~ 327 (474)
T PRK05124 250 VQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTFDGDLEEAFAGEAITLVLED--EIDISRGDLLVAA 327 (474)
T ss_pred EEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEcCccccCcCCCCEEEEEeCC--ccccCCccEEECC
Confidence 9999742 11237899999999999999999999999999999999999999999999999985 5679999999999
Q ss_pred CCCcceeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcc
Q 010318 394 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 473 (513)
Q Consensus 394 ~~~~~~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~ 473 (513)
+.++.++++|+|++.||+ ..+|++||++.+|+|+.+++|+|..|.+.+|++||+. .+|.+|++|+.+.|+|++++
T Consensus 328 ~~~~~~~~~f~a~i~~l~---~~~i~~G~~~~l~~gt~~~~a~i~~i~~~id~~t~~~--~~~~~l~~g~~a~v~l~~~~ 402 (474)
T PRK05124 328 DEALQAVQHASADVVWMA---EQPLQPGQSYDIKIAGKKTRARVDAIRYQVDINTLTQ--REAENLPLNGIGLVELTFDE 402 (474)
T ss_pred CCCCccceEEEEEEEEeC---CcccCCCCeEEEEeCCCEEEEEEEEEeeeeccCCCcc--cCccccCCCCEEEEEEEECC
Confidence 888888999999999954 4679999999999999999999999999999999874 45889999999999999999
Q ss_pred eEEeeecccccccceEEEE--eCCeEEEEEEEEecC
Q 010318 474 SICTEKFADFAQLGRFTLR--TEGKTVAVGKVTELP 507 (513)
Q Consensus 474 pi~~e~~~~~~~lgrfilr--~~g~tva~G~V~~~~ 507 (513)
|+|+++|.+++.||||+|| +.+.|||+|+|+++.
T Consensus 403 pv~~e~~~~~~~lGRfil~dr~~~~tva~G~V~~~~ 438 (474)
T PRK05124 403 PLVLDPYQQNRVTGGFIFIDRLTNVTVGAGMVREPL 438 (474)
T ss_pred eeccccCCcCCcceeEEEEECCCCceEEEEEEeccc
Confidence 9999999999999999995 579999999999876
No 10
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=7.9e-75 Score=602.90 Aligned_cols=400 Identities=29% Similarity=0.496 Sum_probs=370.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCcc--chhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRE--SWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~--s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
++|+++||+|||||||+++||+.+|.++.+.+.++++++...|.+ ||.|+|++|..++|+++|+|++.+...|+++++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 489999999999999999999999999999999999999999986 799999999999999999999999999999999
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHH
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 240 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~ 240 (513)
+++|+|||||++|.++|..++..+|++||||||..|+. +||++|+.++..++++++|||+||||+ .+|+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-------~qt~~~~~~~~~~~~~~iivviNK~D~--~~~~~~ 151 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-------EQTRRHSYIASLLGIRHVVLAVNKMDL--VDYDEE 151 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------cccHHHHHHHHHcCCCcEEEEEEeccc--ccchHH
Confidence 99999999999999999999999999999999999954 799999999999999889999999999 667788
Q ss_pred HHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEEEEE
Q 010318 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF 320 (513)
Q Consensus 241 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~ 320 (513)
+++++.+++..+++.+++. +++++|+||++|.|+.++.+ .++||+|++|.++|+.++.+.+..+.|||++|.+++
T Consensus 152 ~~~~i~~~~~~~~~~~~~~---~~~iipiSA~~g~ni~~~~~--~~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~ 226 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFR---DVTFIPLSALKGDNVVSRSE--SMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVN 226 (406)
T ss_pred HHHHHHHHHHHHHHHcCCC---CccEEEeecccCCCCccccc--CCCccchhHHHHHHHhcCCCCCcCCCCcccceEEEe
Confidence 8999999999999888874 57899999999999998765 489999999999999998888888899999999987
Q ss_pred c--cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEccCCCCcc
Q 010318 321 K--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVA 398 (513)
Q Consensus 321 ~--~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~~ 398 (513)
+ ..+.-+.|+|.+|+|++||+|.++|++..++|++|++++.++++|.||++|+++|++ ..++++||+|++++++++
T Consensus 227 ~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~~G~~v~l~l~~--~~~i~rG~vl~~~~~~~~ 304 (406)
T TIGR02034 227 RPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTFDGDLEQARAGQAVTLTLDD--EIDISRGDLLAAADSAPE 304 (406)
T ss_pred ecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEECCcccCEeCCCCEEEEEECC--ccccCCccEEEcCCCCCC
Confidence 4 223337899999999999999999999999999999999999999999999999984 567999999999998888
Q ss_pred eeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEEee
Q 010318 399 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 478 (513)
Q Consensus 399 ~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~~e 478 (513)
.++.|+|++.||+ +.+|+.||++.+|+|+.+++|+|..|.+.+|++||+. .+|+++++|+.+.|+|++++|+|++
T Consensus 305 ~~~~f~a~i~~l~---~~~i~~g~~~~l~~gt~~~~~~i~~i~~~~d~~t~~~--~~~~~l~~~~~~~v~l~~~~p~~~~ 379 (406)
T TIGR02034 305 VADQFAATLVWMA---EEPLLPGRSYDLKLGTRKVRASVAAIKHKVDVNTLEK--GAAKSLELNEIGRVNLSLDEPIAFD 379 (406)
T ss_pred cceEEEEEEEEeC---hhhcCCCCEEEEEeCCCEEEEEEEEEEEEecCCCCcc--cCCcccCCCCEEEEEEEECCeeccC
Confidence 8999999999954 5689999999999999999999999999999999874 4578999999999999999999999
Q ss_pred ecccccccceEEE--EeCCeEEEEEEE
Q 010318 479 KFADFAQLGRFTL--RTEGKTVAVGKV 503 (513)
Q Consensus 479 ~~~~~~~lgrfil--r~~g~tva~G~V 503 (513)
+|++++.||||+| |++|+|||+|+|
T Consensus 380 ~~~~~~~lGr~~l~d~~~~~tva~G~I 406 (406)
T TIGR02034 380 PYAENRTTGAFILIDRLSNRTVGAGMI 406 (406)
T ss_pred cccCCCcceeEEEEECCCCCeEEEEeC
Confidence 9999999999999 668999999986
No 11
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=6.4e-71 Score=604.18 Aligned_cols=411 Identities=29% Similarity=0.460 Sum_probs=377.7
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCc--cchhhhhhccCchhhhhcCcEEEeeeEEE
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR--ESWYMAYIMDTNEEERIKGKTVEVGRAHF 155 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~--~s~~~~~~~d~~~~e~~~giTi~~~~~~~ 155 (513)
..++.++|+++||+|||||||+|+|++..|.++.+.+.++++++...|. .++.++|.+|..++|+++|+|++.+...|
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 3456789999999999999999999999999999999999999999997 78899999999999999999999999999
Q ss_pred EeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC
Q 010318 156 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 156 ~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 235 (513)
++++.+++|+|||||++|.+++..++..+|++|||||+..|.. +||++|+.++..++++++||++||||+ +
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-------~~t~e~~~~~~~~~~~~iivvvNK~D~--~ 170 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-------TQTRRHSFIASLLGIRHVVLAVNKMDL--V 170 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-------ccCHHHHHHHHHhCCCeEEEEEEeccc--c
Confidence 9999999999999999999999999999999999999999954 699999999999998879999999999 6
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEE
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 315 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~ 315 (513)
+|++++++++..++..+++.+++. +++++|+||++|.|+.++.+ .++||.|++|.++|+.++.+.+..++|||++
T Consensus 171 ~~~~~~~~~i~~~i~~~~~~~~~~---~~~iipiSA~~g~ni~~~~~--~~~wy~g~tL~~~l~~~~~~~~~~~~p~r~~ 245 (632)
T PRK05506 171 DYDQEVFDEIVADYRAFAAKLGLH---DVTFIPISALKGDNVVTRSA--RMPWYEGPSLLEHLETVEIASDRNLKDFRFP 245 (632)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCC---CccEEEEecccCCCcccccc--CCCcccHhHHHHHHhcCCCCCCcCCCCceee
Confidence 678888999999999999888874 57899999999999998765 3899999999999999988777788999999
Q ss_pred EEEEEcc--CCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEccC
Q 010318 316 IIDKFKD--MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSV 393 (513)
Q Consensus 316 i~~~~~~--~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~ 393 (513)
|.++++. .+.-+.|+|.+|+|++||+|+++|++..++|++|++++.++++|.||++|+++|++ ..++++|||||++
T Consensus 246 i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~~~~~~~a~aG~~v~i~l~~--~~~i~rG~vL~~~ 323 (632)
T PRK05506 246 VQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTPDGDLDEAFAGQAVTLTLAD--EIDISRGDMLARA 323 (632)
T ss_pred EEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEECCceeCEEcCCCeEEEEecC--ccccCCccEEecC
Confidence 9999752 22337899999999999999999999999999999999999999999999999984 4679999999999
Q ss_pred CCCcceeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcc
Q 010318 394 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNN 473 (513)
Q Consensus 394 ~~~~~~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~ 473 (513)
+++++++++|+|++.||+ +.++.+||++++|+|+.+++|+|..|.+.+|++|++. ++|.+|++|+.+.|+|++++
T Consensus 324 ~~~~~~~~~f~a~i~~l~---~~~~~~g~~~~l~~gt~~~~a~i~~i~~~~d~~t~~~--~~p~~l~~g~~~~v~l~~~~ 398 (632)
T PRK05506 324 DNRPEVADQFDATVVWMA---EEPLLPGRPYLLKHGTRTVPASVAAIKYRVDVNTLER--LAAKTLELNEIGRCNLSTDA 398 (632)
T ss_pred CCCCcceeEEEEEEEEec---ccccCCCCeEEEEeCCCEEEEEEEEEEEEecCCCCcc--CCcceeCCCCEEEEEEEECC
Confidence 888888999999999954 5567799999999999999999999999999998873 78999999999999999999
Q ss_pred eEEeeecccccccceEEEEe--CCeEEEEEEEEecCCC
Q 010318 474 SICTEKFADFAQLGRFTLRT--EGKTVAVGKVTELPTV 509 (513)
Q Consensus 474 pi~~e~~~~~~~lgrfilr~--~g~tva~G~V~~~~~~ 509 (513)
|+|+++|.+|+.||||+||+ +|+|||+|+|++..+.
T Consensus 399 pi~~e~~~~~~~lGRfilrdr~~~~Tva~G~I~~~~~~ 436 (632)
T PRK05506 399 PIAFDPYARNRTTGSFILIDRLTNATVGAGMIDFALRR 436 (632)
T ss_pred EEeeeeccccccCceEEEEeccCCceEEEEEECccccc
Confidence 99999999999999999955 8999999999987763
No 12
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=4e-67 Score=550.24 Aligned_cols=389 Identities=28% Similarity=0.466 Sum_probs=340.5
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
..++++||+++||+|+|||||+++|++..+.+..+..++ ...+|..++|+++|+|++.+...|++
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~---------------~~~~D~~~~Er~rGiTi~~~~~~~~~ 141 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKK---------------YDEIDAAPEERARGITINTATVEYET 141 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccc---------------cccccCChhHHhCCeeEEEEEEEEec
Confidence 467899999999999999999999999888765443221 13689999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
++++++|||||||++|+++++++++.+|++||||||.+|. .+||++|+.++..+|+|++||++||||+ .+
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~-------~~qt~e~~~~~~~~gi~~iIvvvNK~Dl--~~- 211 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGP-------MPQTKEHILLAKQVGVPNMVVFLNKQDQ--VD- 211 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-------cHHHHHHHHHHHHcCCCeEEEEEecccc--cC-
Confidence 9999999999999999999999999999999999999995 3799999999999999989999999999 44
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc---cccCCCCCCC-cchHHHHhhhc-cCCCCCCCCCc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR---VDKSLCPWWN-GPCLFEALDRI-EITPRDPNGPF 312 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l---~~~~~~~w~~-g~~L~~~l~~l-~~~~~~~~~~~ 312 (513)
.++.++.+.+++..+|+.+||. ..+++++|+||++|.|+... ......+||+ +++|++.|+.+ +.|.+..+.||
T Consensus 212 ~~~~~~~i~~~i~~~l~~~g~~-~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~ 290 (478)
T PLN03126 212 DEELLELVELEVRELLSSYEFP-GDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPF 290 (478)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC-cCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccce
Confidence 3566888888999999999886 24789999999999877421 1112358997 57888888764 45777788999
Q ss_pred eEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC--cEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeee
Q 010318 313 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 388 (513)
Q Consensus 313 ~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~--~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 388 (513)
||+|+++| ++.|+|++|+|.+|.|++||.|.++|.+ ..++|++|+.++.+++.|.|||+|+|+|++++..++++|+
T Consensus 291 r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~A~aG~~v~l~L~~i~~~di~rG~ 370 (478)
T PLN03126 291 LLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMFQKILDEALAGDNVGLLLRGIQKADIQRGM 370 (478)
T ss_pred eeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEECCeECCEEeCCceeeeeccCCcHHHcCCcc
Confidence 99999999 5899999999999999999999999975 5789999999999999999999999999999999999999
Q ss_pred EEccCCCCcceeeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEE
Q 010318 389 VLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIV 465 (513)
Q Consensus 389 vl~~~~~~~~~~~~f~a~i~~~~~l~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~ 465 (513)
||++++. +++++.|+|++.||+... +.+|..||++++|+|+.+++|+|..|....+ ++|++|++|+.+
T Consensus 371 VL~~~~~-~~~~~~F~A~i~vL~~~~gg~~~~I~~G~~~~lhigt~~~~~~I~~i~~~~~--------~~~~~l~~gd~a 441 (478)
T PLN03126 371 VLAKPGS-ITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKD--------EESKMVMPGDRV 441 (478)
T ss_pred EEecCCC-CCceEEEEEEEEEecccccCCcccccCCcEEEEEEEecEEEEEEEEEecccC--------CCccEeCCCCEE
Confidence 9999874 566899999999976421 3589999999999999999999998865432 347889999999
Q ss_pred EEEEEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010318 466 VCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 507 (513)
Q Consensus 466 ~v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~ 507 (513)
.|+|+|.+|+|+++ ++||+||+.|+|+|+|+|+++.
T Consensus 442 ~v~l~~~~Pi~~~~------~~RfilR~~~~Tva~G~V~~v~ 477 (478)
T PLN03126 442 KMVVELIVPVACEQ------GMRFAIREGGKTVGAGVIQSII 477 (478)
T ss_pred EEEEEECCeEEEcc------CCEEEEecCCceEEEEEEEEec
Confidence 99999999999987 4899999999999999999976
No 13
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=4.9e-66 Score=537.91 Aligned_cols=390 Identities=31% Similarity=0.469 Sum_probs=339.9
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
..+++++|+++||+|||||||+|+|++..|.++.+... .+ ..+|..++|+++|+|++.....|++
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~--------------~~-~~~d~~~~e~~rg~T~~~~~~~~~~ 72 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAK--------------KY-DEIDSAPEEKARGITINTAHVEYET 72 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCcccccccc--------------cc-ccccCChhhhcCCEeEEccEEEEcc
Confidence 35788999999999999999999999988876543211 11 2589999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
++++++|+|||||.+|++++++++..+|+++|||||..|+. +||++|+.++..+++|++|+|+||||+ +++
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-------~qt~~~~~~~~~~g~~~iIvvvNK~D~--~~~ 143 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTKEHILLAKQVGVPNIVVFLNKEDQ--VDD 143 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCEEEEEEEccCC--CCH
Confidence 99999999999999999999999999999999999999853 799999999999999988899999999 443
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccccc---CCCCCCCc-chHHHHhhh-ccCCCCCCCCCc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDK---SLCPWWNG-PCLFEALDR-IEITPRDPNGPF 312 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~---~~~~w~~g-~~L~~~l~~-l~~~~~~~~~~~ 312 (513)
++.++.+.+++..+|+.++++. ..++++|+||++|+|+...... ...+||++ ++|++.|+. ++.|.++.+.||
T Consensus 144 -~~~~~~~~~~l~~~l~~~~~~~-~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~ 221 (409)
T CHL00071 144 -EELLELVELEVRELLSKYDFPG-DDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPF 221 (409)
T ss_pred -HHHHHHHHHHHHHHHHHhCCCC-CcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCE
Confidence 4567888889999999998863 3589999999999998654321 12589985 999998887 466777788999
Q ss_pred eEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecC--CcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeee
Q 010318 313 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 388 (513)
Q Consensus 313 ~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~--~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 388 (513)
+++|+++| ++.|+|++|+|.+|+|++||.|++.|. +..++|++|++++.++++|.|||+|+++|++++..++++||
T Consensus 222 r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~i~l~~i~~~~i~~G~ 301 (409)
T CHL00071 222 LMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMFQKTLDEGLAGDNVGILLRGIQKEDIERGM 301 (409)
T ss_pred EEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEcCcCCCEECCCceeEEEEcCCCHHHcCCeE
Confidence 99999999 688999999999999999999998874 57799999999999999999999999999999989999999
Q ss_pred EEccCCCCcceeeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEE
Q 010318 389 VLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIV 465 (513)
Q Consensus 389 vl~~~~~~~~~~~~f~a~i~~~~~l~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~ 465 (513)
+|++++. ++++++|+|++.+|+... ..+|.+||++++|+++.+++|+|..|... + .++|++|++|+.+
T Consensus 302 vl~~~~~-~~~~~~f~a~i~~l~~~~~~~~~~i~~g~~~~~~~gt~~~~~~i~~i~~~----~----~~~~~~l~~g~~a 372 (409)
T CHL00071 302 VLAKPGT-ITPHTKFEAQVYILTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIESFTAD----D----GSKTEMVMPGDRI 372 (409)
T ss_pred EEecCCC-CCcceEEEEEEEEEecccCCccccccCCceEEEEEcccEEEEEEEEEccc----C----CCCCcEecCCCEE
Confidence 9999874 567899999999976432 36899999999999999999999988643 1 2568899999999
Q ss_pred EEEEEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecCC
Q 010318 466 VCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 508 (513)
Q Consensus 466 ~v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~~ 508 (513)
.|+|+|.+|+|++++ |||+||+.|+|+|+|+|+++.+
T Consensus 373 ~v~l~~~~pi~~e~~------~rfilR~~~~tig~G~V~~~~~ 409 (409)
T CHL00071 373 KMTVELIYPIAIEKG------MRFAIREGGRTVGAGVVSKILK 409 (409)
T ss_pred EEEEEECCeEEEeeC------CEEEEecCCeEEEEEEEEEecC
Confidence 999999999999985 7999999999999999998753
No 14
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=8.1e-66 Score=534.09 Aligned_cols=379 Identities=30% Similarity=0.441 Sum_probs=331.0
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
..+++++|+++||+|||||||+++|++..+ ..|+.++...+.+|.+++|+++|+|++.....+++
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~ 72 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET 72 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhh---------------hcCCcccchhhhccCChhHHhcCceEEEeeeEEcC
Confidence 357889999999999999999999986432 23444443446799999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
++.+++|+|||||++|++++.+++..+|+++|||||..|.. +|+++|+.++..+++|++||++||||+ .+
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-------~qt~e~l~~~~~~gi~~iivvvNK~Dl--~~- 142 (396)
T PRK12735 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-------PQTREHILLARQVGVPYIVVFLNKCDM--VD- 142 (396)
T ss_pred CCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------hhHHHHHHHHHHcCCCeEEEEEEecCC--cc-
Confidence 99999999999999999999999999999999999999853 799999999999999976678999999 43
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCc-chHHHHhhh-ccCCCCCCCCCceEE
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMP 315 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g-~~L~~~l~~-l~~~~~~~~~~~~~~ 315 (513)
.++.++.+.+++..+++.+++. ..+++++|+||++|.|... .++||.+ ++|++.|+. ++.|.+..++||+++
T Consensus 143 ~~~~~~~~~~ei~~~l~~~~~~-~~~~~ii~~Sa~~g~n~~~-----~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~ 216 (396)
T PRK12735 143 DEELLELVEMEVRELLSKYDFP-GDDTPIIRGSALKALEGDD-----DEEWEAKILELMDAVDSYIPEPERAIDKPFLMP 216 (396)
T ss_pred hHHHHHHHHHHHHHHHHHcCCC-cCceeEEecchhccccCCC-----CCcccccHHHHHHHHHhcCCCCCccCCCCeEEE
Confidence 3456777888899999988874 2358999999999999643 3789965 889988876 566777888999999
Q ss_pred EEEEE--ccCCeEEEEEEEeeeecCCCEEEEecC--CcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEc
Q 010318 316 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 391 (513)
Q Consensus 316 i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~--~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 391 (513)
|+++| ++.|+|++|+|.+|+|++||+|+++|. +..++|++|+++++++++|.|||+|+++|++++..++++|+|||
T Consensus 217 I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~ 296 (396)
T PRK12735 217 IEDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGTKREDVERGQVLA 296 (396)
T ss_pred EEEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEECCeEeCEECCCCEEEEEeCCCcHHHCCcceEEE
Confidence 99999 688999999999999999999999987 47899999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEE
Q 010318 392 SVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 468 (513)
Q Consensus 392 ~~~~~~~~~~~f~a~i~~~~~l~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~ 468 (513)
+++ ++++++.|+|++.+|+... +.+|+.||++++|+|+.+++|+|.. .++|++|++|+.+.|+
T Consensus 297 ~~~-~~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v~ 362 (396)
T PRK12735 297 KPG-SIKPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGTIEL-------------PEGVEMVMPGDNVKMT 362 (396)
T ss_pred cCC-CCCcceEEEEEEEEEecccCCCCCcccCCCeeEEEeccceEEEEEEc-------------cCCCceeCCCCEEEEE
Confidence 987 4567899999999976321 3578999999999999999999741 1346789999999999
Q ss_pred EEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010318 469 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 507 (513)
Q Consensus 469 ~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~ 507 (513)
|+|++|+|++++ +||+||+.|+|+|+|+|+++.
T Consensus 363 l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 395 (396)
T PRK12735 363 VELIAPIAMEEG------LRFAIREGGRTVGAGVVAKII 395 (396)
T ss_pred EEECceEEEeEC------CEEEEEcCCcEEEEEEEEEec
Confidence 999999999985 899999999999999999875
No 15
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.8e-65 Score=531.03 Aligned_cols=379 Identities=31% Similarity=0.449 Sum_probs=329.8
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
..++++||+++||+|||||||+++|++... ..|+......+.+|..++|+++|+|++.....+++
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~ 72 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET 72 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhh---------------hccCCcccchhhccCChHHHhcCeEEeeeEEEEcC
Confidence 357889999999999999999999986431 12222222334799999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
++++++|+|||||.+|++++.+++..+|++++||||..|. .+|+++|+.++..+++|.+||++||||+ .+
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~-------~~qt~~~~~~~~~~g~p~iiVvvNK~D~--~~- 142 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP-------MPQTREHILLARQVGVPYIVVFLNKCDM--VD- 142 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCC-------chHHHHHHHHHHHcCCCEEEEEEeecCC--cc-
Confidence 9999999999999999999999999999999999999985 3799999999999999966679999999 43
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCc-chHHHHhhh-ccCCCCCCCCCceEE
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMP 315 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g-~~L~~~l~~-l~~~~~~~~~~~~~~ 315 (513)
.++.++.+.+++..+|+.+++. ..+++++|+||++|.+- ...++||++ ++|+++|+. ++.|.+..++||+|+
T Consensus 143 ~~~~~~~~~~~i~~~l~~~~~~-~~~~~iv~iSa~~g~~~-----~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~ 216 (396)
T PRK00049 143 DEELLELVEMEVRELLSKYDFP-GDDTPIIRGSALKALEG-----DDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMP 216 (396)
T ss_pred hHHHHHHHHHHHHHHHHhcCCC-ccCCcEEEeecccccCC-----CCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEE
Confidence 4456777888999999998884 24689999999999873 234789975 899998886 666777888999999
Q ss_pred EEEEE--ccCCeEEEEEEEeeeecCCCEEEEecC--CcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEc
Q 010318 316 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 391 (513)
Q Consensus 316 i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~--~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 391 (513)
|+++| ++.|+|++|+|.+|+|++||+|+++|. +..++|++|++++.++++|.|||+|+++|++++..++++|++||
T Consensus 217 I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~ 296 (396)
T PRK00049 217 IEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMFRKLLDEGQAGDNVGALLRGIKREDVERGQVLA 296 (396)
T ss_pred EEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEECCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEe
Confidence 99999 589999999999999999999999986 68899999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEE
Q 010318 392 SVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 468 (513)
Q Consensus 392 ~~~~~~~~~~~f~a~i~~~~~l~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~ 468 (513)
+++ ++++++.|+|++.+|+... +++|+.||++++|+++.+++|+|. + .++|++|++|+.+.|+
T Consensus 297 ~~~-~~~~~~~f~a~i~vl~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~-l------------~~~~~~l~~g~~a~v~ 362 (396)
T PRK00049 297 KPG-SITPHTKFEAEVYVLSKEEGGRHTPFFNGYRPQFYFRTTDVTGVIE-L------------PEGVEMVMPGDNVEMT 362 (396)
T ss_pred cCC-CCCcceEEEEEEEEEecCcCCCCCcccCCCEEEEEEecCcEEEEEE-e------------cCCCcccCCCCEEEEE
Confidence 987 4556799999999976321 368999999999999999999983 2 2357889999999999
Q ss_pred EEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010318 469 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 507 (513)
Q Consensus 469 ~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~ 507 (513)
|+|.+|+|++++ |||+||+.|+|+|+|+|+++.
T Consensus 363 i~~~~p~~~e~~------~RfilR~~g~t~~~G~V~~v~ 395 (396)
T PRK00049 363 VELIAPIAMEEG------LRFAIREGGRTVGAGVVTKII 395 (396)
T ss_pred EEECceEEEeeC------CEEEEecCCcEEEEEEEEEec
Confidence 999999999985 799999999999999999875
No 16
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=5.7e-65 Score=527.44 Aligned_cols=377 Identities=30% Similarity=0.461 Sum_probs=327.5
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
..++++||+++||+|||||||+++|+...+ +.|+.++...+.+|..++|+++|+|++.....|++
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~ 72 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLA---------------ERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET 72 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhh---------------hhccccccchhhhcCCHHHHhcCccEEEEeeEecC
Confidence 367889999999999999999999974322 12444444445799999999999999999999998
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
++++++|+|||||++|+++++++++.+|++|||||+.+|.. +||++|+.++..+|+|++|||+||||+ ++
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~-------~~t~~~~~~~~~~g~~~~IvviNK~D~--~~- 142 (394)
T PRK12736 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLARQVGVPYLVVFLNKVDL--VD- 142 (394)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-------hhHHHHHHHHHHcCCCEEEEEEEecCC--cc-
Confidence 99999999999999999999999999999999999999853 799999999999999988899999999 43
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCc-chHHHHhhh-ccCCCCCCCCCceEE
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMP 315 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g-~~L~~~l~~-l~~~~~~~~~~~~~~ 315 (513)
+++.++.+.+++..+|+..++.. ..++++|+||++|.+- ..+||.+ ++|++.|.. ++.|.+..++||+++
T Consensus 143 ~~~~~~~i~~~i~~~l~~~~~~~-~~~~ii~vSa~~g~~~-------~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~ 214 (394)
T PRK12736 143 DEELLELVEMEVRELLSEYDFPG-DDIPVIRGSALKALEG-------DPKWEDAIMELMDAVDEYIPTPERDTDKPFLMP 214 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCc-CCccEEEeeccccccC-------CCcchhhHHHHHHHHHHhCCCCCCCCCCCeEEE
Confidence 34566777889999999988752 3579999999999542 1479864 788887765 677777788999999
Q ss_pred EEEEE--ccCCeEEEEEEEeeeecCCCEEEEecC--CcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEc
Q 010318 316 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 391 (513)
Q Consensus 316 i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~--~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 391 (513)
|+++| ++.|+|++|+|.+|+|++||+|+++|. +..++|++|+++++++++|.|||+|+++|++++..++++|+|||
T Consensus 215 I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~ 294 (394)
T PRK12736 215 VEDVFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEMFRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLA 294 (394)
T ss_pred EEEEEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEECCEEccEECCCCEEEEEECCCcHHhCCcceEEe
Confidence 99999 689999999999999999999999997 67899999999999999999999999999999989999999999
Q ss_pred cCCCCcceeeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEE
Q 010318 392 SVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 468 (513)
Q Consensus 392 ~~~~~~~~~~~f~a~i~~~~~l~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~ 468 (513)
+++. ++++++|+|++.+|+... ..+|..||++++|+|+.++.|+|.. .++|.+|++|+.+.|+
T Consensus 295 ~~~~-~~~~~~f~a~i~vl~~~~~~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v~ 360 (394)
T PRK12736 295 KPGS-IKPHTKFKAEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIEL-------------PEGTEMVMPGDNVTIT 360 (394)
T ss_pred cCCC-CCcceEEEEEEEEEecccCCCCCcccCCceEEEEEccCeEEEEEEe-------------cCCcceeCCCCEEEEE
Confidence 9874 456799999999975321 2678999999999999999999742 2346789999999999
Q ss_pred EEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010318 469 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 507 (513)
Q Consensus 469 ~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~ 507 (513)
|+|++|+|++++ +||+||+.|+|+|+|+|+++.
T Consensus 361 l~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 393 (394)
T PRK12736 361 VELIHPIAMEQG------LKFAIREGGRTVGAGTVTEIL 393 (394)
T ss_pred EEECceEEEeeC------CEEEEecCCcEEEEEEEEEee
Confidence 999999999985 799999999999999999875
No 17
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=3.5e-64 Score=522.21 Aligned_cols=377 Identities=30% Similarity=0.457 Sum_probs=327.1
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
..++.++|+++||+|||||||+++|++... ..|+.++...+.+|..++|+++|+|++.....+++
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---------------~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~ 72 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLA---------------KEGGAAARAYDQIDNAPEEKARGITINTAHVEYET 72 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHH---------------HhhcccccccccccCCHHHHhcCcceeeEEEEEcC
Confidence 357889999999999999999999975421 23444444457899999999999999999999998
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
++++++|+|||||++|.++++++++.+|+++|||||.+|.. +||++|+.++..+++|++|+|+||||+ .++
T Consensus 73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~-------~qt~e~l~~~~~~gi~~iIvvvNK~Dl--~~~ 143 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPM-------PQTREHILLARQVGVPYIVVFLNKCDM--VDD 143 (394)
T ss_pred CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCEEEEEEEeccc--CCH
Confidence 89999999999999999999999999999999999999853 799999999999999977789999999 442
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCC-cchHHHHhhhc-cCCCCCCCCCceEE
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN-GPCLFEALDRI-EITPRDPNGPFRMP 315 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~-g~~L~~~l~~l-~~~~~~~~~~~~~~ 315 (513)
++.++.+.+++..+++.+++.. .+++++|+||++|.+- ..+||. +++|++.|+.+ +.|.+..++||+++
T Consensus 144 -~~~~~~~~~~i~~~l~~~~~~~-~~~~ii~vSa~~g~~g-------~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~ 214 (394)
T TIGR00485 144 -EELLELVEMEVRELLSEYDFPG-DDTPIIRGSALKALEG-------DAEWEAKILELMDAVDEYIPTPERETDKPFLMP 214 (394)
T ss_pred -HHHHHHHHHHHHHHHHhcCCCc-cCccEEECcccccccc-------CCchhHhHHHHHHHHHhcCCCCCCCCCCCeEEE
Confidence 3466777888999999888752 3489999999998642 246997 48888888764 56777788999999
Q ss_pred EEEEE--ccCCeEEEEEEEeeeecCCCEEEEecC--CcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEc
Q 010318 316 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 391 (513)
Q Consensus 316 i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~--~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 391 (513)
|+++| ++.|+|++|+|.+|+|++||+|.+.|. +..++|++|++++.++++|.|||+|+++|++++..++++|+||+
T Consensus 215 V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~ 294 (394)
T TIGR00485 215 IEDVFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMFRKELDEGRAGDNVGLLLRGIKREEIERGMVLA 294 (394)
T ss_pred EEEEEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEECCeEEEEECCCCEEEEEeCCccHHHCCccEEEe
Confidence 99999 688999999999999999999999984 57899999999999999999999999999999888999999999
Q ss_pred cCCCCcceeeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEE
Q 010318 392 SVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 468 (513)
Q Consensus 392 ~~~~~~~~~~~f~a~i~~~~~l~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~ 468 (513)
+++ ++++++.|+|++.||+... +.+|+.||++++|+++.++.|+|.. .++|.+|++|+.+.|+
T Consensus 295 ~~~-~~~~~~~f~a~i~vl~~~~g~~~~~i~~g~~~~l~~~t~~~~~~i~~-------------~~~~~~l~~g~~a~v~ 360 (394)
T TIGR00485 295 KPG-SIKPHTKFEAEVYVLKKEEGGRHTPFFSGYRPQFYFRTTDVTGSITL-------------PEGVEMVMPGDNVKMT 360 (394)
T ss_pred cCC-CCCcceEEEEEEEEEecCCCCCCCccccCceEEEEEecceEEEEEEe-------------cCCcceeCCCCEEEEE
Confidence 986 4556799999999965321 3689999999999999999999872 1347789999999999
Q ss_pred EEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010318 469 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 507 (513)
Q Consensus 469 ~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~ 507 (513)
|+|++|+|++++ +||+||+.|+|+|+|+|+++.
T Consensus 361 ~~~~~p~~~~~~------~rfilR~~g~tv~~G~V~~v~ 393 (394)
T TIGR00485 361 VELISPIALEQG------MRFAIREGGRTVGAGVVSKII 393 (394)
T ss_pred EEECceEEEeEC------CEEEEecCCcEEEEEEEEEec
Confidence 999999999985 799999999999999999886
No 18
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=7.3e-64 Score=523.31 Aligned_cols=376 Identities=28% Similarity=0.449 Sum_probs=322.5
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhh-hccCchhhhhcCcEEEeeeEEEE
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAY-IMDTNEEERIKGKTVEVGRAHFE 156 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~-~~d~~~~e~~~giTi~~~~~~~~ 156 (513)
..++++||+++||+|||||||+++|.... .+.|+.. ...| .+|..++|+++|+|++.+...|+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---------------~~~g~~~-~~~~~~~D~~~~E~~rGiTi~~~~~~~~ 120 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVL---------------AEEGKAK-AVAFDEIDKAPEEKARGITIATAHVEYE 120 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHH---------------HHhhccc-ceeeccccCChhHhhcCceeeeeEEEEc
Confidence 46789999999999999999999994321 1123322 1222 68999999999999999999999
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010318 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 157 ~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 236 (513)
+++++|+|+|||||.+|++++++++..+|+++|||||.+|.. +||++|+.++..+++|++|+++||||+ ++
T Consensus 121 ~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~-------~qt~e~l~~~~~~gip~iIvviNKiDl--v~ 191 (447)
T PLN03127 121 TAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-------PQTKEHILLARQVGVPSLVVFLNKVDV--VD 191 (447)
T ss_pred CCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCc-------hhHHHHHHHHHHcCCCeEEEEEEeecc--CC
Confidence 999999999999999999999999999999999999999854 799999999999999977899999999 54
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccc---cccccccccCCCCCCCcchHHHHhhh-ccCCCCCCCCCc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG---LNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPNGPF 312 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g---~gi~~l~~~~~~~w~~g~~L~~~l~~-l~~~~~~~~~~~ 312 (513)
.++.++.+.+++..+++.+++. ...+|++|+||+++ .|+. ..|+.+++|++.|+. ++.|.+..++||
T Consensus 192 -~~~~~~~i~~~i~~~l~~~~~~-~~~vpiip~Sa~sa~~g~n~~-------~~~~~i~~Ll~~l~~~lp~p~r~~~~pf 262 (447)
T PLN03127 192 -DEELLELVEMELRELLSFYKFP-GDEIPIIRGSALSALQGTNDE-------IGKNAILKLMDAVDEYIPEPVRVLDKPF 262 (447)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCC-CCcceEEEeccceeecCCCcc-------cccchHHHHHHHHHHhCCCCCcccccce
Confidence 3446666777888888887774 23689999998754 4432 346677888888776 566777788999
Q ss_pred eEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecC----CcEEEEEEEEECCeeecccCCCCeEEEEeccCCccccee
Q 010318 313 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN----KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILS 386 (513)
Q Consensus 313 ~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~----~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~ 386 (513)
+|+|+++| +|.|+|++|+|.+|.|++||.|+++|. +..++|++|++++.++++|.|||+|+++|++++..++++
T Consensus 263 r~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~~~~v~~a~aGd~v~l~L~~i~~~~i~r 342 (447)
T PLN03127 263 LMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQR 342 (447)
T ss_pred EeeEEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEECcEeCEEcCCCEEEEEeCCCCHHHCCC
Confidence 99999999 589999999999999999999999865 468999999999999999999999999999999999999
Q ss_pred eeEEccCCCCcceeeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCc
Q 010318 387 GFVLSSVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGA 463 (513)
Q Consensus 387 G~vl~~~~~~~~~~~~f~a~i~~~~~l~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~ 463 (513)
||||++++ ++..+++|+|++.+|+... +.+|..||++++|+++.+++|+|.. .++|.+|++|+
T Consensus 343 G~Vl~~~~-~~~~~~~F~A~i~vl~~~~gg~~~~i~~g~~~~~~~~t~~~~~~i~~-------------~~~~~~l~~gd 408 (447)
T PLN03127 343 GQVICKPG-SIKTYKKFEAEIYVLTKDEGGRHTPFFSNYRPQFYLRTADVTGKVEL-------------PEGVKMVMPGD 408 (447)
T ss_pred ccEEecCC-CCceeEEEEEEEEEEcccccccCcccccCceeEEEeeecceeEEEEe-------------ccCccccCCCC
Confidence 99999985 5678999999999976321 3678999999999999999999852 23577899999
Q ss_pred EEEEEEEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010318 464 IVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 507 (513)
Q Consensus 464 ~~~v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~ 507 (513)
.+.|+|+|.+|+|++++ +||+||+.|+|+|+|+|+++.
T Consensus 409 ~a~v~l~~~~p~~le~g------~RfilR~~g~Tvg~G~V~~v~ 446 (447)
T PLN03127 409 NVTAVFELISPVPLEPG------QRFALREGGRTVGAGVVSKVL 446 (447)
T ss_pred EEEEEEEECceEEEeeC------CEEEEEeCCcEEEEEEEEEec
Confidence 99999999999999975 899999999999999999875
No 19
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-60 Score=445.59 Aligned_cols=377 Identities=31% Similarity=0.478 Sum_probs=321.0
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
..+++.||+.+||+|||||||..+|..... ..|..+.....-.|..++|+++||||+.+...+++
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la---------------~~~~~~~~~y~~id~aPeEk~rGITIntahveyet 72 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLA---------------KKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET 72 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHH---------------hhccccccchhhhccCchHhhcCceeccceeEEec
Confidence 468899999999999999999998832221 11111111122357788999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
.++.|..+|+|||.+|++||+.|+++.|++||||+|.+|.+ +||++|+.+++..|+|++++++||+|+ ++
T Consensus 73 ~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpm-------PqTrEHiLlarqvGvp~ivvflnK~Dm--vd- 142 (394)
T COG0050 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLARQVGVPYIVVFLNKVDM--VD- 142 (394)
T ss_pred CCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCC-------CcchhhhhhhhhcCCcEEEEEEecccc--cC-
Confidence 99999999999999999999999999999999999999977 799999999999999999999999999 65
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCc-chHHHHhhh-ccCCCCCCCCCceEE
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMP 315 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g-~~L~~~l~~-l~~~~~~~~~~~~~~ 315 (513)
+.+.++.+..+++.+|..++|. ..+.|++--||+..-.=. .+|... ..|+++++. ++.|.++.++||+++
T Consensus 143 d~ellelVemEvreLLs~y~f~-gd~~Pii~gSal~ale~~-------~~~~~~i~eLm~avd~yip~Per~~dkPflmp 214 (394)
T COG0050 143 DEELLELVEMEVRELLSEYGFP-GDDTPIIRGSALKALEGD-------AKWEAKIEELMDAVDSYIPTPERDIDKPFLMP 214 (394)
T ss_pred cHHHHHHHHHHHHHHHHHcCCC-CCCcceeechhhhhhcCC-------cchHHHHHHHHHHHHhcCCCCCCccccccccc
Confidence 5788999999999999999997 457788888876532211 124321 236666664 788999999999999
Q ss_pred EEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC--cEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEc
Q 010318 316 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 391 (513)
Q Consensus 316 i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~--~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 391 (513)
|.++| .|+|+|++|+|.+|+|++|+.+.+.... ++..|.+++++++..+++.||++|++.|+|+.+.++.||++|+
T Consensus 215 vEdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvemfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLa 294 (394)
T COG0050 215 VEDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLA 294 (394)
T ss_pred ceeeEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHHHHHHHhccccCCCcceEEEeccccceecceEee
Confidence 99999 5899999999999999999999987665 5678999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEE
Q 010318 392 SVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 468 (513)
Q Consensus 392 ~~~~~~~~~~~f~a~i~~~~~l~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~ 468 (513)
.|+ ...+.++|+|+++++..-. |+++-.||.|.+|+++..+++.+. + .+....+++|+.+.+.
T Consensus 295 kpg-si~ph~kfeaevyvL~keeggrhtpff~~yrpqfyfRttDVtg~i~-l------------~eg~emvmpgdnv~~~ 360 (394)
T COG0050 295 KPG-SIKPHTKFEAEVYVLSKEEGGRHTPFFHGYRPQFYFRTTDVTGAIT-L------------PEGVEMVMPGDNVKMV 360 (394)
T ss_pred cCC-cccccceeeEEEEEEecccCCCCCCcccCccceeEEEeeeeeeeEe-c------------cCCcceecCCCceEEE
Confidence 988 4677899999999975322 488999999999999998888544 1 1224569999999999
Q ss_pred EEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010318 469 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 507 (513)
Q Consensus 469 ~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~ 507 (513)
++|.+||++|.. .||.+|..|+|+|.|.|+++.
T Consensus 361 veLi~pia~e~G------~rFaIreGgrtvgaGvV~~i~ 393 (394)
T COG0050 361 VELIHPIAMEEG------LRFAIREGGRTVGAGVVTKII 393 (394)
T ss_pred EEEeeeeecCCC------CEEEEEeCCeeeeeeEEeeec
Confidence 999999999987 599999999999999999885
No 20
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.2e-61 Score=459.21 Aligned_cols=382 Identities=31% Similarity=0.457 Sum_probs=325.7
Q ss_pred cCCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEE
Q 010318 77 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (513)
Q Consensus 77 ~~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~ 156 (513)
...+++.||+.+||+|||||||..++.... .+.|...+.-..-.|.-++|+.|||||+.....++
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkil---------------a~~g~A~~~kydeID~APEEkaRGITIn~aHveYe 113 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKIL---------------AEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYE 113 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHH---------------HhccccccccHhhhhcChhhhhccceEeeeeeeee
Confidence 457899999999999999999998883211 12233333333356888999999999999999999
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010318 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 157 ~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 236 (513)
+..+.|--+|+|||.+|+++|+.|+++.|++||||.|++|.| +||+||+.+++..|+++++|++||.|+ ++
T Consensus 114 Ta~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~M-------PQTrEHlLLArQVGV~~ivvfiNKvD~--V~ 184 (449)
T KOG0460|consen 114 TAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPM-------PQTREHLLLARQVGVKHIVVFINKVDL--VD 184 (449)
T ss_pred ccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCC-------cchHHHHHHHHHcCCceEEEEEecccc--cC
Confidence 999999999999999999999999999999999999999977 799999999999999999999999999 64
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhh-ccCCCCCCCCCceEE
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR-IEITPRDPNGPFRMP 315 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~-l~~~~~~~~~~~~~~ 315 (513)
+.+.++-+.-+++++|..+||+ ..+.|+|.-||+..--=.+. . ...-.-.-|++.++. +|.|.++.+.||.++
T Consensus 185 -d~e~leLVEmE~RElLse~gf~-Gd~~PvI~GSAL~ALeg~~p--e--ig~~aI~kLldavDsyip~P~R~~~~pFl~p 258 (449)
T KOG0460|consen 185 -DPEMLELVEMEIRELLSEFGFD-GDNTPVIRGSALCALEGRQP--E--IGLEAIEKLLDAVDSYIPTPERDLDKPFLLP 258 (449)
T ss_pred -CHHHHHHHHHHHHHHHHHcCCC-CCCCCeeecchhhhhcCCCc--c--ccHHHHHHHHHHHhccCCCcccccCCCceee
Confidence 4677888888999999999998 56789998887543210100 0 000000126666776 899999999999999
Q ss_pred EEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC--cEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEc
Q 010318 316 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 391 (513)
Q Consensus 316 i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~--~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 391 (513)
|.++| .|+|+|++|++++|.|+.||++.+...+ ....|..|+++++.+++|.|||.+++-|+|+...+++||||++
T Consensus 259 ie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiemF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~ 338 (449)
T KOG0460|consen 259 IEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLA 338 (449)
T ss_pred hhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHHHHHHHHhcccccceehhhhcCCHHHHhcccEEe
Confidence 99999 6999999999999999999999998766 5678999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEE
Q 010318 392 SVAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 468 (513)
Q Consensus 392 ~~~~~~~~~~~f~a~i~~~~~l~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~ 468 (513)
.|+. ..+.++|+|++++|+.-. |+++..+|.+.+++.+..+.|++.-.- ...++++|+.+.++
T Consensus 339 ~pGs-vk~~~k~ea~~YiLsk~EGGR~~pf~s~y~~q~fs~TwD~~~~v~~~~-------------~~~mvMPGe~~~~~ 404 (449)
T KOG0460|consen 339 KPGS-VKPHNKFEAQLYILSKEEGGRHKPFVSGYRPQMFSRTWDVTGRVDIPP-------------EKEMVMPGENVKVE 404 (449)
T ss_pred cCCc-ccccceeeEEEEEEEhhhCCCccchhhccchhheeeecccceEEEccC-------------hHhcccCCCCeEEE
Confidence 9995 788999999999976432 388999999999999999999987321 13569999999999
Q ss_pred EEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecCC
Q 010318 469 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 508 (513)
Q Consensus 469 ~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~~ 508 (513)
+.|-+|+++++. .||.||+.|+|||.|+|+++++
T Consensus 405 ~~Li~pm~le~G------qrFtiReGg~TvgtGvvt~~l~ 438 (449)
T KOG0460|consen 405 VTLIRPMPLEKG------QRFTLREGGRTVGTGVVTDTLP 438 (449)
T ss_pred EEEecccccCCC------ceeeEccCCeeeeeeeEeeeee
Confidence 999999999987 6999999999999999999876
No 21
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=3.9e-56 Score=463.93 Aligned_cols=346 Identities=22% Similarity=0.384 Sum_probs=288.4
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
..++.++|+++||+|||||||+++|. |. .+|..++|.++|+|++.++.++.+
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~aLt---g~-------------------------~~~r~~~E~~rGiTi~lGfa~~~~ 81 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVKALS---GV-------------------------KTVRFKREKVRNITIKLGYANAKI 81 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHHh---CC-------------------------CcccchhhHHhCCchhcccccccc
Confidence 45678999999999999999999993 21 235567889999999998876521
Q ss_pred ---------------C------------------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccC
Q 010318 158 ---------------E------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEK 204 (513)
Q Consensus 158 ---------------~------------------~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~ 204 (513)
. .+.++|+|||||++|+++|++|++.+|++||||||.+|. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~------~ 155 (460)
T PTZ00327 82 YKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESC------P 155 (460)
T ss_pred ccCcccCCcccccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCc------c
Confidence 1 247999999999999999999999999999999999862 1
Q ss_pred CcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccC
Q 010318 205 GGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKS 284 (513)
Q Consensus 205 ~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~ 284 (513)
++||++|+.++..++++++|||+||||+... +++.+..+++..+++.... ..+++||+||++|.|++.
T Consensus 156 ~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~----~~~~~~~~ei~~~l~~~~~---~~~~iipVSA~~G~nI~~----- 223 (460)
T PTZ00327 156 QPQTSEHLAAVEIMKLKHIIILQNKIDLVKE----AQAQDQYEEIRNFVKGTIA---DNAPIIPISAQLKYNIDV----- 223 (460)
T ss_pred chhhHHHHHHHHHcCCCcEEEEEecccccCH----HHHHHHHHHHHHHHHhhcc---CCCeEEEeeCCCCCCHHH-----
Confidence 3799999999999999889999999999432 3344555555556654322 257999999999999986
Q ss_pred CCCCCCcchHHHHhh-hccCCCCCCCCCceEEEEEEE--cc--------CCeEEEEEEEeeeecCCCEEEEecCC-----
Q 010318 285 LCPWWNGPCLFEALD-RIEITPRDPNGPFRMPIIDKF--KD--------MGTVVMGKVESGSVREGDSLLVMPNK----- 348 (513)
Q Consensus 285 ~~~w~~g~~L~~~l~-~l~~~~~~~~~~~~~~i~~~~--~~--------~G~vv~g~v~sG~l~~gd~v~~~p~~----- 348 (513)
|.++|. .++.+.+..+.||+++|+++| ++ +|+|++|+|.+|+|++||+|.++|++
T Consensus 224 ---------Ll~~L~~~lp~~~r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~ 294 (460)
T PTZ00327 224 ---------VLEYICTQIPIPKRDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDS 294 (460)
T ss_pred ---------HHHHHHhhCCCCCCCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccc
Confidence 666666 678777888899999999887 22 69999999999999999999999975
Q ss_pred --------cEEEEEEEEECCeeecccCCCCeEEEEec---cCCcccceeeeEEccCCCCcceeeEEEEEEEEeccc----
Q 010318 349 --------AQVKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL---- 413 (513)
Q Consensus 349 --------~~~~V~~i~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~l---- 413 (513)
..++|++|++++.++++|.|||+|+++|+ +++..++.+||||++++..++.++.|+|++.|++..
T Consensus 295 ~g~~~~~~~~~~VksI~~~~~~v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~~~~ 374 (460)
T PTZ00327 295 GGEFTCRPIRTRIVSLFAENNELQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLLGVK 374 (460)
T ss_pred cCccccccceEEEEEEEECCeECCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEeccccccc
Confidence 36799999999999999999999999987 788889999999999987777888999999997542
Q ss_pred -------c-cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEEeeecccccc
Q 010318 414 -------D-NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQ 485 (513)
Q Consensus 414 -------~-~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~~~~~~ 485 (513)
. ..+|+.||++.+|+++.++.|+|..|. . .. .++|+|.+|+|+.+.
T Consensus 375 ~~~~~~~~~~~~l~~g~~~~l~~gt~~~~~~i~~i~----~---------------~~--~~~l~l~~P~~~~~g----- 428 (460)
T PTZ00327 375 SQDGKKATKVAKLKKGESLMINIGSTTTGGRVVGIK----D---------------DG--IAKLELTTPVCTSVG----- 428 (460)
T ss_pred ccccccccCCcccCCCCEEEEEecccEEEEEEEEeC----C---------------Ce--EEEEEECccEeccCC-----
Confidence 0 158999999999999999999999652 1 01 678999999998876
Q ss_pred cceEEEEeC----CeEEEEEEEEe
Q 010318 486 LGRFTLRTE----GKTVAVGKVTE 505 (513)
Q Consensus 486 lgrfilr~~----g~tva~G~V~~ 505 (513)
.||+||+. .+|+|+|.|..
T Consensus 429 -dr~ilr~~~~~~~~tig~G~i~~ 451 (460)
T PTZ00327 429 -EKIALSRRVDKHWRLIGWGTIRK 451 (460)
T ss_pred -CEEEEEeccCCCcEEEEEEEEcC
Confidence 59999964 48999999874
No 22
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=1e-53 Score=462.11 Aligned_cols=339 Identities=25% Similarity=0.389 Sum_probs=291.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe-CCeE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTR 161 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~ 161 (513)
+.|+++||+|||||||+++|. |. .+|..++|+++|+|++.++..+.. ++..
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLt---g~-------------------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~ 52 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAIT---GV-------------------------NADRLPEEKKRGMTIDLGYAYWPQPDGRV 52 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHh---CC-------------------------CCccchhcccCCceEEeeeEEEecCCCcE
Confidence 368999999999999999993 21 145667888999999999888866 4678
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHH
Q 010318 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 241 (513)
Q Consensus 162 i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~ 241 (513)
++|||||||++|.++|+.++..+|+++||||+++|++ +||++|+.++..+++|++|||+||||+ + ++++
T Consensus 53 i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~-------~qT~ehl~il~~lgi~~iIVVlNKiDl--v--~~~~ 121 (614)
T PRK10512 53 LGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVM-------AQTREHLAILQLTGNPMLTVALTKADR--V--DEAR 121 (614)
T ss_pred EEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEECCcc--C--CHHH
Confidence 9999999999999999999999999999999999964 799999999999999977899999999 4 2456
Q ss_pred HHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEEEEE-
Q 010318 242 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF- 320 (513)
Q Consensus 242 ~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~- 320 (513)
++.+.+++..+++..++. ..++||+||++|.|+++ |.+.|..++.+....+.|||++|+++|
T Consensus 122 ~~~v~~ei~~~l~~~~~~---~~~ii~VSA~tG~gI~~--------------L~~~L~~~~~~~~~~~~~~rl~Id~vf~ 184 (614)
T PRK10512 122 IAEVRRQVKAVLREYGFA---EAKLFVTAATEGRGIDA--------------LREHLLQLPEREHAAQHRFRLAIDRAFT 184 (614)
T ss_pred HHHHHHHHHHHHHhcCCC---CCcEEEEeCCCCCCCHH--------------HHHHHHHhhccccCcCCCceEEEEEEec
Confidence 777888888888877764 46899999999999987 556666666666667899999999999
Q ss_pred -ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEecc-CCcccceeeeEEccCCCCcc
Q 010318 321 -KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSG-IEEEDILSGFVLSSVAKPVA 398 (513)
Q Consensus 321 -~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~-~~~~~i~~G~vl~~~~~~~~ 398 (513)
+|.|+|++|+|.+|+|++||+|.++|.+..++|++|++++.++++|.||++|+++|+| ++..++++||+|++++ ++.
T Consensus 185 v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~-~~~ 263 (614)
T PRK10512 185 VKGAGLVVTGTALSGEVKVGDTLWLTGVNKPMRVRGLHAQNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA-PPE 263 (614)
T ss_pred cCCCeEEEEEEEecceEecCCEEEEcCCCCcEEEEEEecCCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC-CCc
Confidence 6899999999999999999999999999999999999999999999999999999997 8889999999999875 455
Q ss_pred eeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEEee
Q 010318 399 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 478 (513)
Q Consensus 399 ~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~~e 478 (513)
++..+.+.+.. ..+++.|+++.+|+++.++.|+|..+ +.+.+++.|++|+++.
T Consensus 264 ~~~~~~~~l~~-----~~~l~~~~~~~~~~gt~~~~~~i~~l----------------------~~~~~~l~l~~p~~~~ 316 (614)
T PRK10512 264 PFTRVIVELQT-----HTPLTQWQPLHIHHAASHVTGRVSLL----------------------EDNLAELVLDTPLWLA 316 (614)
T ss_pred cceeEEEEEcC-----CccCCCCCEEEEEEcccEEEEEEEEc----------------------CCeEEEEEECCccccc
Confidence 66665443321 25788999999999999999998854 1257999999999987
Q ss_pred ecccccccceEEEEe--CCeEEEEEEEEecCCCCC
Q 010318 479 KFADFAQLGRFTLRT--EGKTVAVGKVTELPTVSS 511 (513)
Q Consensus 479 ~~~~~~~lgrfilr~--~g~tva~G~V~~~~~~~~ 511 (513)
.. .||+||+ ..+|+|+|.|+.+.++..
T Consensus 317 ~g------dr~ilr~~s~~~tigGg~Vld~~~~~~ 345 (614)
T PRK10512 317 DN------DRLVLRDISARNTLAGARVVMLNPPRR 345 (614)
T ss_pred CC------CEEEEEeCCCCEEEEEEEEcccCCccc
Confidence 75 6999999 469999999999776543
No 23
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=100.00 E-value=8.8e-54 Score=414.59 Aligned_cols=361 Identities=29% Similarity=0.459 Sum_probs=303.3
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEE--
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF-- 155 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~-- 155 (513)
....+++|+++||+|||||||+++| .+|..+++. |.+ ...+|..++|-++|.|-++...-+
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~L--vtG~~DDG~-----------G~t----R~~ldv~kHEverGlsa~iS~~v~Gf 175 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVL--VTGRLDDGD-----------GAT----RSYLDVQKHEVERGLSADISLRVYGF 175 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEE--EecCCCCCC-----------cch----hhhhhhhhHHHhhccccceeEEEEEe
Confidence 3467899999999999999999999 677777642 111 112344445555665555544332
Q ss_pred ---------------------EeCCeEEEEEeCCCCcchHHHHHHhh--hhcCEEEEEEECCCCcccccccCCcchHHHH
Q 010318 156 ---------------------ETETTRFTILDAPGHKSYVPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHV 212 (513)
Q Consensus 156 ---------------------~~~~~~i~liDtPGh~~f~~~~~~~~--~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l 212 (513)
+..++.+.|+||-||+.|++++++|+ ...|+.+|||.|++|++ ..|+||+
T Consensus 176 ~dgk~~rlknPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~-------~~tkEHL 248 (527)
T COG5258 176 DDGKVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT-------KMTKEHL 248 (527)
T ss_pred cCCceEeecCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc-------hhhhHhh
Confidence 22356799999999999999999998 58999999999999965 6999999
Q ss_pred HHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcc-------------------cCCeeEEEeeccc
Q 010318 213 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV-------------------KKDVQFLPISGLM 273 (513)
Q Consensus 213 ~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~-------------------~~~~~iipiSa~~ 273 (513)
.++.++++| +|||+||+|+ + +.++++.+.+++...|+..+--+ ..-+|+|.+|+.+
T Consensus 249 gi~~a~~lP-viVvvTK~D~--~--~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVT 323 (527)
T COG5258 249 GIALAMELP-VIVVVTKIDM--V--PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVT 323 (527)
T ss_pred hhhhhhcCC-EEEEEEeccc--C--cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEeccc
Confidence 999999999 8999999999 4 46899999999999998765220 1247999999999
Q ss_pred ccccccccccCCCCCCCcchHHHHhhhccCCCC-CCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC--
Q 010318 274 GLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR-DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK-- 348 (513)
Q Consensus 274 g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~-~~~~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~-- 348 (513)
|+|++- |.+++..+|...+ ....||.|+|+++| .|.|+|+.|.|.+|.|+.||+++++|..
T Consensus 324 g~Gldl--------------L~e~f~~Lp~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G 389 (527)
T COG5258 324 GEGLDL--------------LDEFFLLLPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDG 389 (527)
T ss_pred CccHHH--------------HHHHHHhCCcccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCC
Confidence 999985 5667777776533 56789999999999 6999999999999999999999999976
Q ss_pred --cEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEccCCCCcceeeEEEEEEEEeccccc-ccccCCcEEE
Q 010318 349 --AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAV 425 (513)
Q Consensus 349 --~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~l~~-~~i~~G~~~~ 425 (513)
..++|+||++|+.++++|.||.+++++|+|+....+++||||+.+ .+|+++++|+|++++ +.| +.|+.||.++
T Consensus 390 ~fr~v~vkSIemh~~rvdsa~aG~iig~Al~gv~~e~lerGMVl~~~-~~pkaVref~AeV~v---l~HPT~I~aGye~v 465 (527)
T COG5258 390 KFREVVVKSIEMHHYRVDSAKAGSIIGIALKGVEKEELERGMVLSAG-ADPKAVREFDAEVLV---LRHPTTIRAGYEPV 465 (527)
T ss_pred cEEEEEEEEEEEeeEEeccccCCcEEEEEecccCHHHHhcceEecCC-CCchhhheecceEEE---EeCCcEEecCceee
Confidence 678999999999999999999999999999999999999999997 678999999999999 667 8899999999
Q ss_pred EEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEc-ceEEeeecccccccceEEEEeCCeEEEEEEEE
Q 010318 426 LHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN-NSICTEKFADFAQLGRFTLRTEGKTVAVGKVT 504 (513)
Q Consensus 426 ~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~-~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~ 504 (513)
+|+.++++++++..|.. .+|++|+.+.++++|. +|-.++.. .+|++ ++|++.|+|.|+
T Consensus 466 ~H~etI~e~~~f~~id~--------------~~L~~GD~g~vr~~fkyrP~~v~eG------Q~fvF-ReGrskgvG~v~ 524 (527)
T COG5258 466 FHYETIREAVYFEEIDK--------------GFLMPGDRGVVRMRFKYRPHHVEEG------QKFVF-REGRSKGVGRVI 524 (527)
T ss_pred eEeeEeeheeEEEEccc--------------ccccCCCcceEEEEEEeCchhhccC------cEEEE-ecCCCccceEEe
Confidence 99999999999986632 3599999999999986 89888873 35665 589999999999
Q ss_pred ec
Q 010318 505 EL 506 (513)
Q Consensus 505 ~~ 506 (513)
.+
T Consensus 525 ~~ 526 (527)
T COG5258 525 RV 526 (527)
T ss_pred cc
Confidence 76
No 24
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=5.7e-52 Score=431.89 Aligned_cols=341 Identities=24% Similarity=0.412 Sum_probs=279.9
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe--
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-- 157 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~-- 157 (513)
++.++|+++||+|||||||+++|. + ..+|..++|+++|+|++.++..+.+
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt---~-------------------------~~~d~~~~e~~rg~Ti~~~~~~~~~~~ 53 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALT---G-------------------------VWTDTHSEELKRGISIRLGYADAEIYK 53 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHh---C-------------------------eecccCHhHHHcCceeEeccccccccc
Confidence 567999999999999999999992 1 1256777889999999998665431
Q ss_pred ------------------------CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHH
Q 010318 158 ------------------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 213 (513)
Q Consensus 158 ------------------------~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~ 213 (513)
.++.++|+|||||++|.++++++++.+|++||||||++|.. ..|+++|+.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~------~~qt~e~l~ 127 (406)
T TIGR03680 54 CPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCP------QPQTKEHLM 127 (406)
T ss_pred ccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCcc------ccchHHHHH
Confidence 14689999999999999999999999999999999999841 369999999
Q ss_pred HHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcch
Q 010318 214 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPC 293 (513)
Q Consensus 214 ~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~ 293 (513)
++..++++++||++||+|+...++.... .+++..+++.... ..++++|+||++|+|+.+
T Consensus 128 ~l~~~gi~~iIVvvNK~Dl~~~~~~~~~----~~~i~~~l~~~~~---~~~~ii~vSA~~g~gi~~-------------- 186 (406)
T TIGR03680 128 ALEIIGIKNIVIVQNKIDLVSKEKALEN----YEEIKEFVKGTVA---ENAPIIPVSALHNANIDA-------------- 186 (406)
T ss_pred HHHHcCCCeEEEEEEccccCCHHHHHHH----HHHHHhhhhhccc---CCCeEEEEECCCCCChHH--------------
Confidence 9999998879999999999433222223 3344444443321 257899999999999987
Q ss_pred HHHHhhh-ccCCCCCCCCCceEEEEEEE--cc--------CCeEEEEEEEeeeecCCCEEEEecCC------------cE
Q 010318 294 LFEALDR-IEITPRDPNGPFRMPIIDKF--KD--------MGTVVMGKVESGSVREGDSLLVMPNK------------AQ 350 (513)
Q Consensus 294 L~~~l~~-l~~~~~~~~~~~~~~i~~~~--~~--------~G~vv~g~v~sG~l~~gd~v~~~p~~------------~~ 350 (513)
|.+.|.. ++.+.++.+.||+|+|+++| ++ +|+|++|+|.+|+|++||+|.++|++ ..
T Consensus 187 L~e~L~~~l~~~~~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~ 266 (406)
T TIGR03680 187 LLEAIEKFIPTPERDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIY 266 (406)
T ss_pred HHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccc
Confidence 5555554 67677778899999999998 23 57899999999999999999999985 24
Q ss_pred EEEEEEEECCeeecccCCCCeEEEEec---cCCcccceeeeEEccCCCCcceeeEEEEEEEEeccc-------ccccccC
Q 010318 351 VKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIFTA 420 (513)
Q Consensus 351 ~~V~~i~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~l-------~~~~i~~ 420 (513)
++|++|++++.++++|.||++|+|+|+ +++..++++||||++++.+|+.+.+|+|++.|+... ...+|+.
T Consensus 267 ~~V~sI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~~~~~~~~~~~i~~ 346 (406)
T TIGR03680 267 TEITSLRAGGYKVEEARPGGLVGVGTKLDPALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEELKVEPIKT 346 (406)
T ss_pred eEEeEEEECCEECCEEcCCCEEEEeeccCCCCCHHHcccccEEEcCCCCCCceeEEEEEEEEEecccCcccccccccCCC
Confidence 799999999999999999999999984 788899999999999987788889999999996532 1368999
Q ss_pred CcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEEeeecccccccceEEE--EeCC--e
Q 010318 421 GYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTL--RTEG--K 496 (513)
Q Consensus 421 G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~~~~~~lgrfil--r~~g--~ 496 (513)
||++.+|+++.+++|+|..+. ++ .++++|.+|+|+... .||+| |.++ +
T Consensus 347 g~~~~l~~gt~~~~~~v~~~~--------------------~~--~~~l~l~~p~~~~~g------~r~~~~~~~~~~~~ 398 (406)
T TIGR03680 347 GEVLMLNVGTATTVGVVTSAR--------------------KD--EIEVKLKRPVCAEEG------DRVAISRRVGGRWR 398 (406)
T ss_pred CCEEEEEEccceEEEEEEEcC--------------------Cc--EEEEEECCcEEcCCC------CEEEEEEecCCceE
Confidence 999999999999999999652 11 377889999999876 59999 3345 8
Q ss_pred EEEEEEE
Q 010318 497 TVAVGKV 503 (513)
Q Consensus 497 tva~G~V 503 (513)
++|.|.|
T Consensus 399 ~~g~g~~ 405 (406)
T TIGR03680 399 LIGYGII 405 (406)
T ss_pred EEEEEEe
Confidence 9999987
No 25
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=1.1e-51 Score=429.27 Aligned_cols=343 Identities=24% Similarity=0.410 Sum_probs=281.6
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
..++.++|+++||+|||||||+++|. + ..+|..++|+++|+|++.++..+.+
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~---~-------------------------~~~d~~~~E~~rg~Ti~~~~~~~~~ 56 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALT---G-------------------------VWTDRHSEELKRGITIRLGYADATI 56 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhh---C-------------------------eecccCHhHHhcCcEEEeccccccc
Confidence 35678999999999999999999982 1 1267778999999999988654333
Q ss_pred C--------------------------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHH
Q 010318 158 E--------------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH 211 (513)
Q Consensus 158 ~--------------------------~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~ 211 (513)
. .+.++|+|||||++|..+++.++..+|++|+|||+.+|.. ..++.++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~------~~~t~~~ 130 (411)
T PRK04000 57 RKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCP------QPQTKEH 130 (411)
T ss_pred ccccccCccccccccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCC------ChhHHHH
Confidence 1 3689999999999999999999999999999999998741 3689999
Q ss_pred HHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCc
Q 010318 212 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG 291 (513)
Q Consensus 212 l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g 291 (513)
+.++..++++++++|+||+|+...+ ......+++..+++.... ..++++|+||++|.|+.+|
T Consensus 131 l~~l~~~~i~~iiVVlNK~Dl~~~~----~~~~~~~~i~~~l~~~~~---~~~~ii~vSA~~g~gI~~L----------- 192 (411)
T PRK04000 131 LMALDIIGIKNIVIVQNKIDLVSKE----RALENYEQIKEFVKGTVA---ENAPIIPVSALHKVNIDAL----------- 192 (411)
T ss_pred HHHHHHcCCCcEEEEEEeeccccch----hHHHHHHHHHHHhccccC---CCCeEEEEECCCCcCHHHH-----------
Confidence 9999999987789999999994322 222333444444443211 2468999999999999874
Q ss_pred chHHHHhhh-ccCCCCCCCCCceEEEEEEE--cc--------CCeEEEEEEEeeeecCCCEEEEecCCc-----------
Q 010318 292 PCLFEALDR-IEITPRDPNGPFRMPIIDKF--KD--------MGTVVMGKVESGSVREGDSLLVMPNKA----------- 349 (513)
Q Consensus 292 ~~L~~~l~~-l~~~~~~~~~~~~~~i~~~~--~~--------~G~vv~g~v~sG~l~~gd~v~~~p~~~----------- 349 (513)
++.|.. ++.+.+..+.||+++|+++| ++ +|+|++|+|.+|+|++||.|.++|++.
T Consensus 193 ---~~~L~~~l~~~~~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~ 269 (411)
T PRK04000 193 ---IEAIEEEIPTPERDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEP 269 (411)
T ss_pred ---HHHHHHhCCCCCCCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceeccccccccc
Confidence 444444 56677777899999999998 23 577999999999999999999999863
Q ss_pred -EEEEEEEEECCeeecccCCCCeEEEEec---cCCcccceeeeEEccCCCCcceeeEEEEEEEEecccc-------cccc
Q 010318 350 -QVKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD-------NAIF 418 (513)
Q Consensus 350 -~~~V~~i~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~l~-------~~~i 418 (513)
.++|++|++++.++++|.||++|+++|+ +++..++++||||++++.+++.+++|+|++.|++... ..+|
T Consensus 270 ~~~~VksI~~~~~~~~~a~~G~~v~i~l~~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~~~~~~~~~~~i 349 (411)
T PRK04000 270 ITTKIVSLRAGGEKVEEARPGGLVGVGTKLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGTKEELKVEPI 349 (411)
T ss_pred ceEEEeEEEECCEECCEEcCCCEEEEEeccCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhcCccccccCCCC
Confidence 5799999999999999999999999996 6778889999999999988888999999999965310 2589
Q ss_pred cCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEEeeecccccccceEEE--EeCC-
Q 010318 419 TAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTL--RTEG- 495 (513)
Q Consensus 419 ~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~~~~~~lgrfil--r~~g- 495 (513)
.+||++.+|+++.+++|+|..|. ++ .++++|.+|+|+.+. .||+| |.++
T Consensus 350 ~~g~~~~l~~~t~~~~~~i~~i~--------------------~~--~~~~~l~~p~~~~~g------~r~~~~~~~~~~ 401 (411)
T PRK04000 350 KTGEPLMLNVGTATTVGVVTSAR--------------------KD--EAEVKLKRPVCAEEG------DRVAISRRVGGR 401 (411)
T ss_pred CCCCEEEEEEeccEEEEEEEEcC--------------------Cc--EEEEEECCcEecCCC------CEEEEEEecCCc
Confidence 99999999999999999999662 12 577889999999876 59999 5667
Q ss_pred -eEEEEEEE
Q 010318 496 -KTVAVGKV 503 (513)
Q Consensus 496 -~tva~G~V 503 (513)
+++|.|.|
T Consensus 402 ~~~~~~~~~ 410 (411)
T PRK04000 402 WRLIGYGII 410 (411)
T ss_pred EEEEEEEEe
Confidence 99999987
No 26
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=2.6e-50 Score=434.59 Aligned_cols=335 Identities=27% Similarity=0.404 Sum_probs=282.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
++|+++||+|||||||+++|... .+|..++|+.+|+|++.++..+.++++.+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~----------------------------~~d~~~eE~~rGiTid~~~~~~~~~~~~v 52 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGI----------------------------AADRLPEEKKRGMTIDLGFAYFPLPDYRL 52 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCc----------------------------cCcCChhHhcCCceEEeEEEEEEeCCEEE
Confidence 47999999999999999999321 13455677889999999999999999999
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHH
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 242 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~ 242 (513)
+|+|||||++|.++|+.++..+|++|+|||+++|.+ +||.+|+.++..+++|++|||+||||+ ++ ++.+
T Consensus 53 ~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~-------~qT~ehl~il~~lgi~~iIVVlNK~Dl--v~--~~~~ 121 (581)
T TIGR00475 53 GFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVM-------TQTGEHLAVLDLLGIPHTIVVITKADR--VN--EEEI 121 (581)
T ss_pred EEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEECCCC--CC--HHHH
Confidence 999999999999999999999999999999999864 699999999999999999999999999 43 4556
Q ss_pred HHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEEEEE--
Q 010318 243 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF-- 320 (513)
Q Consensus 243 ~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~-- 320 (513)
+.+.+++..+++..++. .+++++|+||++|.|+.++... |.+.++.++.+ ..+.||+++|+++|
T Consensus 122 ~~~~~ei~~~l~~~~~~--~~~~ii~vSA~tG~GI~eL~~~----------L~~l~~~~~~~--~~~~p~r~~Id~~f~v 187 (581)
T TIGR00475 122 KRTEMFMKQILNSYIFL--KNAKIFKTSAKTGQGIGELKKE----------LKNLLESLDIK--RIQKPLRMAIDRAFKV 187 (581)
T ss_pred HHHHHHHHHHHHHhCCC--CCCcEEEEeCCCCCCchhHHHH----------HHHHHHhCCCc--CcCCCcEEEEEEEEec
Confidence 67777888888777653 2479999999999999987542 45555555443 25789999999999
Q ss_pred ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEccCCCCccee
Q 010318 321 KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV 400 (513)
Q Consensus 321 ~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~~~~ 400 (513)
+|.|+|++|+|.+|+|++||+|.++|.+..++|++|+.+++++++|.||++|+++|++++..++++|++++++..+ .
T Consensus 188 ~G~GtVv~G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~~~~---~ 264 (581)
T TIGR00475 188 KGAGTVVTGTAFSGEVKVGDNLRLLPINHEVRVKAIQAQNQDVEIAYAGQRIALNLMDVEPESLKRGLLILTPEDP---K 264 (581)
T ss_pred CCcEEEEEEEEecceEecCCEEEECCCCceEEEeEEEECCccCCEEECCCEEEEEeCCCCHHHcCCceEEcCCCCC---C
Confidence 6899999999999999999999999999999999999999999999999999999999999999999888876532 1
Q ss_pred eEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEEeeec
Q 010318 401 TEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKF 480 (513)
Q Consensus 401 ~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~ 480 (513)
..+...+.. ..+|..|+.+.+|+++.++.|+|..+ |. ..+++.+++|+++...
T Consensus 265 ~~~~~~~~~-----~~~l~~~~~~~~~~gt~~~~~~i~~l----~~------------------~~~~l~l~~P~~~~~g 317 (581)
T TIGR00475 265 LRVVVKFIA-----EVPLLELQPYHIAHGMSVTTGKISLL----DK------------------GIALLTLDAPLILAKG 317 (581)
T ss_pred ceEEEEEEc-----CCccCCCCeEEEEEeceEEEEEEEEc----cC------------------cEEEEEECCceecCCC
Confidence 222232222 24688999999999999999998744 21 1678889999998876
Q ss_pred ccccccceEEEEeC-CeEEEEEEEEec
Q 010318 481 ADFAQLGRFTLRTE-GKTVAVGKVTEL 506 (513)
Q Consensus 481 ~~~~~lgrfilr~~-g~tva~G~V~~~ 506 (513)
.||++|++ .+|+|+|.|+..
T Consensus 318 ------d~~i~r~~~~~tiggg~vl~~ 338 (581)
T TIGR00475 318 ------DKLVLRDSSGNFLAGARVLEP 338 (581)
T ss_pred ------CEEEEEeCCCEEEeeeEEecC
Confidence 49999995 699999999987
No 27
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=100.00 E-value=1.4e-51 Score=397.74 Aligned_cols=378 Identities=25% Similarity=0.363 Sum_probs=313.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhH-----HHHHHHHHhhcCccchhhhhhccCchhhhh------cCcEEE
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRT-----IQKYEKEAKDKSRESWYMAYIMDTNEEERI------KGKTVE 149 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~-----~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~------~giTi~ 149 (513)
-..+|+++|++|+|||||++.| ..|.++++. --..+++..++||+|+..+-++.++.+... .|...
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVL--THgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~L- 208 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVL--THGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNL- 208 (641)
T ss_pred eeEEEEEEecccCCcceeEeee--eecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcc-
Confidence 4578999999999999999988 667776642 112355667999999999999888765431 12111
Q ss_pred eeeEE-EEeCCeEEEEEeCCCCcchHHHHHHhhh--hcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEE
Q 010318 150 VGRAH-FETETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLV 226 (513)
Q Consensus 150 ~~~~~-~~~~~~~i~liDtPGh~~f~~~~~~~~~--~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivv 226 (513)
.+.. ++...+.++|||.+||++|+++++.|+. .+|+.+|+|-|+.|+. ++|+||+.++.++.+| ++||
T Consensus 209 -dWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-------GmTKEHLgLALaL~VP-VfvV 279 (641)
T KOG0463|consen 209 -DWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-------GMTKEHLGLALALHVP-VFVV 279 (641)
T ss_pred -cceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-------eccHHhhhhhhhhcCc-EEEE
Confidence 1122 2334578999999999999999999984 7999999999999975 7999999999999999 8899
Q ss_pred EeeccCCCCCchHHHHHHHHhhhHhhhhhccCc--------------------ccCCeeEEEeecccccccccccccCCC
Q 010318 227 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYN--------------------VKKDVQFLPISGLMGLNMKTRVDKSLC 286 (513)
Q Consensus 227 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~--------------------~~~~~~iipiSa~~g~gi~~l~~~~~~ 286 (513)
++|+|++.++ .+++....+..+++..|+. ...-+|++.+|..+|+|+.-
T Consensus 280 VTKIDMCPAN----iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~L------- 348 (641)
T KOG0463|consen 280 VTKIDMCPAN----ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPL------- 348 (641)
T ss_pred EEeeccCcHH----HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHH-------
Confidence 9999997664 5667777788888877654 23346899999999999874
Q ss_pred CCCCcchHHHHhhhccCC-CCCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC----cEEEEEEEEEC
Q 010318 287 PWWNGPCLFEALDRIEIT-PRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAIYCD 359 (513)
Q Consensus 287 ~w~~g~~L~~~l~~l~~~-~~~~~~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~----~~~~V~~i~~~ 359 (513)
|..+|+.++.. ....+.|..|.|+++| +|.|+|+.|++.+|+|+.+|.+.++|.. .+..|+||++.
T Consensus 349 -------LkmFLNlls~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIHRK 421 (641)
T KOG0463|consen 349 -------LKMFLNLLSLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIHRK 421 (641)
T ss_pred -------HHHHHhhcCcccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhhhc
Confidence 44566665443 3356789999999998 7999999999999999999999999975 57899999999
Q ss_pred CeeecccCCCCeEEEEeccCCcccceeeeEEccCCCCcceeeEEEEEEEEeccccc-ccccCCcEEEEEEEeEEEEEEEE
Q 010318 360 DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIV 438 (513)
Q Consensus 360 ~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~l~~-~~i~~G~~~~~~~~~~~~~~~i~ 438 (513)
+-+|..+.+||.+.++|+.++..++|+|||+++++-.|+++|+|+|+|.+ ++| +.|.+.|+.++||++++|+|.|.
T Consensus 422 RMpV~~VrcGQtASFALKKIkr~~vRKGMVmVsp~lkPqAsweFEaEILV---LHHPTTIsprYQAMvHcGSiRQTAtiv 498 (641)
T KOG0463|consen 422 RMPVGIVRCGQTASFALKKIKRKDVRKGMVMVSPKLKPQASWEFEAEILV---LHHPTTISPRYQAMVHCGSIRQTATIV 498 (641)
T ss_pred cccceEEeccchhhhHhhhcchhhhhcceEEecCCCCcceeeEEeeeEEE---EecCCccCcchhheeeeccccceeeee
Confidence 99999999999999999999999999999999999999999999999999 777 88999999999999999999988
Q ss_pred EEEEEeecCCCccccccceeecCCcEEEEEEEEc-ceEEeeecccccccceEEEEeCCeEEEEEEEEecCCCCCC
Q 010318 439 ELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN-NSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSSS 512 (513)
Q Consensus 439 ~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~-~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~~~~~~ 512 (513)
++. -.+|+.|+.+.|.|+|- .|-++.+ |.-+++++|||.|+|.|+++++..+.
T Consensus 499 sM~--------------kdcLRTGDka~V~FrFIkqPEYir~-------gqrlVFREGRTKAVGti~~~lp~~~~ 552 (641)
T KOG0463|consen 499 SMG--------------KDCLRTGDKAKVQFRFIKQPEYIRP-------GQRLVFREGRTKAVGTISSVLPQESL 552 (641)
T ss_pred ecC--------------hhhhhcCCcceEEEEEecCcceecC-------CceEEeecccceeeeeeccccccccc
Confidence 663 24699999999999984 4655544 55556679999999999999887654
No 28
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-48 Score=388.47 Aligned_cols=337 Identities=27% Similarity=0.405 Sum_probs=279.4
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
.|+..||+|||||||+.+|. ....|..+++.++|+|++++++++..+++.+.
T Consensus 2 ii~t~GhidHgkT~L~~alt----------------------------g~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~ 53 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT----------------------------GGVTDRLPEEKKRGITIDLGFYYRKLEDGVMG 53 (447)
T ss_pred eEEEeeeeeccchhhhhhhc----------------------------ccccccchhhhhcCceEeeeeEeccCCCCceE
Confidence 68999999999999998882 12456778999999999999999999999999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHH
Q 010318 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 243 (513)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~ 243 (513)
|||+|||++|+++|+.|+...|+++||||+++|++ +||.||+.++..+|+++.+||+||+|+ ++ ..+.+
T Consensus 54 fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~-------~qtgEhL~iLdllgi~~giivltk~D~--~d--~~r~e 122 (447)
T COG3276 54 FIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLM-------AQTGEHLLILDLLGIKNGIIVLTKADR--VD--EARIE 122 (447)
T ss_pred EeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcc-------hhhHHHHHHHHhcCCCceEEEEecccc--cc--HHHHH
Confidence 99999999999999999999999999999999954 799999999999999999999999999 43 34555
Q ss_pred HHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhcc-CCCCCCCCCceEEEEEEE--
Q 010318 244 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIE-ITPRDPNGPFRMPIIDKF-- 320 (513)
Q Consensus 244 ~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~-~~~~~~~~~~~~~i~~~~-- 320 (513)
+..+++...+. +. +.+++++|+.+|+||++|. +.|..+. .+.++.+.|||++|+++|
T Consensus 123 ~~i~~Il~~l~---l~---~~~i~~~s~~~g~GI~~Lk--------------~~l~~L~~~~e~d~~~~fri~IDraFtV 182 (447)
T COG3276 123 QKIKQILADLS---LA---NAKIFKTSAKTGRGIEELK--------------NELIDLLEEIERDEQKPFRIAIDRAFTV 182 (447)
T ss_pred HHHHHHHhhcc---cc---cccccccccccCCCHHHHH--------------HHHHHhhhhhhhccCCceEEEEeeEEEe
Confidence 55555544444 43 6789999999999999853 3333333 466788999999999999
Q ss_pred ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEccCCCCccee
Q 010318 321 KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAV 400 (513)
Q Consensus 321 ~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~~~~ 400 (513)
+|.|||++|.+.||++++||++++.|.++.++|||||.++.++++|.||++|+++|+|++.+++.||++|++++ +..++
T Consensus 183 KGvGTVVtGtv~sG~V~v~D~L~l~p~~k~v~VRsIq~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~-~~~v~ 261 (447)
T COG3276 183 KGVGTVVTGTVLSGEVKVGDKLYLSPINKEVRVRSIQAHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE-PLEVT 261 (447)
T ss_pred ccccEEEEeEEeeeeEEECCEEEEecCCCeEEEEeeeecCcchhhccccceeeeecCCCCHHHhhcccEeccCC-CCCcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999987 44678
Q ss_pred eEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEEeeec
Q 010318 401 TEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKF 480 (513)
Q Consensus 401 ~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~ 480 (513)
++|.+.+.|... ...++..+....+|++..+++|++..+.. + +.+.+..|+..-..
T Consensus 262 ~~~~~~~~i~~~-~~~~l~~~~~~hi~~g~~~~~~~i~~l~~-------------------~----~~l~~~k~i~~~~~ 317 (447)
T COG3276 262 TRLIVELEIDPL-FKKTLKQGQPVHIHVGLRSVTGRIVPLEK-------------------N----AELNLVKPIALGDN 317 (447)
T ss_pred eEEEEEEEeccc-cccccCCCceEEEEEeccccceEeeeccc-------------------c----ceeeeecccccccC
Confidence 889988887432 23678999999999999999999885421 1 33444455543221
Q ss_pred ccccccceEEEEeC--CeEEEEEEEEecCCCC
Q 010318 481 ADFAQLGRFTLRTE--GKTVAVGKVTELPTVS 510 (513)
Q Consensus 481 ~~~~~lgrfilr~~--g~tva~G~V~~~~~~~ 510 (513)
++++||+. ..+.+++.|+....+.
T Consensus 318 ------~~l~lr~~~a~~~~~g~rvl~~~~~~ 343 (447)
T COG3276 318 ------DRLVLRDNSAVIKLAGARVLSLNLPL 343 (447)
T ss_pred ------ceEEEEcccceeeeccceEEecCCCC
Confidence 46666664 4666666666655443
No 29
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-45 Score=355.14 Aligned_cols=376 Identities=23% Similarity=0.346 Sum_probs=309.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchh------HHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeee-E
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDR------TIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR-A 153 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~------~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~-~ 153 (513)
-..++|++|..|+|||||++.| ..|.++++ .++++.|+. .+||+|+....++.++..+.--+....... .
T Consensus 166 ievRvAVlGg~D~GKSTLlGVL--TQgeLDnG~GrARln~FRh~HEi-qsGrTSsis~evlGFd~~g~vVNY~~~~taEE 242 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVL--TQGELDNGNGRARLNIFRHPHEI-QSGRTSSISNEVLGFDNRGKVVNYAQNMTAEE 242 (591)
T ss_pred eEEEEEEecCcccCcceeeeee--ecccccCCCCeeeeehhcchhhh-ccCcccccchhcccccccccccchhhcccHHH
Confidence 4579999999999999999988 67777765 356665554 789999998888887764432222211111 1
Q ss_pred EEEeCCeEEEEEeCCCCcchHHHHHHhhh--hcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 154 HFETETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 154 ~~~~~~~~i~liDtPGh~~f~~~~~~~~~--~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
..+..++.++|||.+||.+|.++++.|+. .+|+|+|||+|..|+. ..|+||+.++.++++| |+|+++|||
T Consensus 243 i~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~-------~tTrEHLgl~~AL~iP-fFvlvtK~D 314 (591)
T KOG1143|consen 243 IVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGIT-------WTTREHLGLIAALNIP-FFVLVTKMD 314 (591)
T ss_pred HHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCc-------cccHHHHHHHHHhCCC-eEEEEEeec
Confidence 13456788999999999999999999986 6999999999999964 6899999999999999 999999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCc--------------------ccCCeeEEEeecccccccccccccCCCCCCCc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYN--------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG 291 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~--------------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g 291 (513)
+ . +..-++.+.+++..++++.|+. ...-+|++.+|..+|+|+.-
T Consensus 315 l--~--~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l------------ 378 (591)
T KOG1143|consen 315 L--V--DRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL------------ 378 (591)
T ss_pred c--c--cchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH------------
Confidence 9 4 3456788889999999988875 12346899999999999974
Q ss_pred chHHHHhhhccCCCC------CCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC----cEEEEEEEEEC
Q 010318 292 PCLFEALDRIEITPR------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAIYCD 359 (513)
Q Consensus 292 ~~L~~~l~~l~~~~~------~~~~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~----~~~~V~~i~~~ 359 (513)
|..+|+.+++... ....|..|.|++.| +..|+|+.|.+.+|.++.|+.+.++|.. .+.+|-+|+++
T Consensus 379 --l~~fLn~Lsp~~~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~Rn 456 (591)
T KOG1143|consen 379 --LRTFLNCLSPAGTAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRRN 456 (591)
T ss_pred --HHHHHhhcCCcCChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeecc
Confidence 4445666554322 23567889999999 6899999999999999999999999976 57899999999
Q ss_pred CeeecccCCCCeEEEEeccCCcccceeeeEEccCCCCcceeeEEEEEEEEeccccc-ccccCCcEEEEEEEeEEEEEEEE
Q 010318 360 DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIV 438 (513)
Q Consensus 360 ~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~l~~-~~i~~G~~~~~~~~~~~~~~~i~ 438 (513)
+.++..+.|||.+.+.|...+...+|+|||+..++..|+.+..|+|.+.+ +-| +.|+.|||..+|+++++++|.|.
T Consensus 457 r~acrvvraGqaAslsl~d~D~~~LR~GMVl~~~~~nP~~c~~F~A~~~l---LfHaT~i~~GFQ~TVhiGsvrqTAvi~ 533 (591)
T KOG1143|consen 457 RQACRVVRAGQAASLSLNDPDGVSLRRGMVLAEIDHNPPVCYEFTANLLL---LFHATYICEGFQATVHIGSVRQTAVIT 533 (591)
T ss_pred ccceeeecCccceeeeccCCCccchhcceEEeecCCCCceEEEEeeeehh---hhhhHhheecceEEEEEcceeeeeeee
Confidence 99999999999999999877777899999999999889999999999998 445 89999999999999999999988
Q ss_pred EEEEEeecCCCccccccceeecCCcEEEEEEEEc-ceEEeeecccccccceEEEEeCCeEEEEEEEEecCC
Q 010318 439 ELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN-NSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 508 (513)
Q Consensus 439 ~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~-~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~~ 508 (513)
.|.. ..+|++|++|.|+|.|. +|-++. -|.-+|+++|.|.|+|.|+++.+
T Consensus 534 ~I~~-------------~d~lrtg~~AvV~f~F~~hPEyir-------~G~~ilfReG~tKGiG~Vt~Vfp 584 (591)
T KOG1143|consen 534 HIDD-------------ADCLRTGKWAVVKFCFAYHPEYIR-------EGSPILFREGKTKGIGEVTKVFP 584 (591)
T ss_pred eecc-------------cccccCCceEEEEEEecCCchhcc-------CCCeeeeecccccccceEEEEEe
Confidence 7642 23599999999999974 554443 46778888999999999999864
No 30
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-41 Score=322.88 Aligned_cols=343 Identities=26% Similarity=0.407 Sum_probs=282.0
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe--
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-- 157 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~-- 157 (513)
++..||+++||||||||||+.+| +| ..+|+..+|.+||+||..++.....
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~Al---sG-------------------------vwT~~hseElkRgitIkLGYAd~~i~k 59 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKAL---SG-------------------------VWTDRHSEELKRGITIKLGYADAKIYK 59 (415)
T ss_pred CcceEeeeeeecccchhhheehh---hc-------------------------eeeechhHHHhcCcEEEeccccCceEe
Confidence 56799999999999999999988 22 2356777889999999998764211
Q ss_pred ------------------C------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHH
Q 010318 158 ------------------E------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM 213 (513)
Q Consensus 158 ------------------~------~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~ 213 (513)
. -+++.|+|+|||+-.+.+|++|++..|+|||||+|++.. .++||+||+.
T Consensus 60 C~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpc------PQPQT~EHl~ 133 (415)
T COG5257 60 CPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPC------PQPQTREHLM 133 (415)
T ss_pred CCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCC------CCCchHHHHH
Confidence 0 156899999999999999999999999999999999976 5799999999
Q ss_pred HHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcch
Q 010318 214 LAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPC 293 (513)
Q Consensus 214 ~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~ 293 (513)
.+..+|++++|++-||+|+ + ++++..+-.+++.+|++-.- ..+.|+||+||.++.||+.
T Consensus 134 AleIigik~iiIvQNKIDl--V--~~E~AlE~y~qIk~FvkGt~---Ae~aPIIPiSA~~~~NIDa-------------- 192 (415)
T COG5257 134 ALEIIGIKNIIIVQNKIDL--V--SRERALENYEQIKEFVKGTV---AENAPIIPISAQHKANIDA-------------- 192 (415)
T ss_pred HHhhhccceEEEEecccce--e--cHHHHHHHHHHHHHHhcccc---cCCCceeeehhhhccCHHH--------------
Confidence 9999999999999999999 4 35555555666666766432 2468999999999999997
Q ss_pred HHHHh-hhccCCCCCCCCCceEEEEEEEc----c------CCeEEEEEEEeeeecCCCEEEEecCC------------cE
Q 010318 294 LFEAL-DRIEITPRDPNGPFRMPIIDKFK----D------MGTVVMGKVESGSVREGDSLLVMPNK------------AQ 350 (513)
Q Consensus 294 L~~~l-~~l~~~~~~~~~~~~~~i~~~~~----~------~G~vv~g~v~sG~l~~gd~v~~~p~~------------~~ 350 (513)
|.+++ +.+|.|.++.+.|.+|+|.++|. | .|-|+.|.+.+|.|++||+|.+.|+- ..
T Consensus 193 l~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~ 272 (415)
T COG5257 193 LIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPIT 272 (415)
T ss_pred HHHHHHHhCCCCccCCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEee
Confidence 45544 45899999999999999999982 2 68899999999999999999999963 24
Q ss_pred EEEEEEEECCeeecccCCCCeEEEEec---cCCcccceeeeEEccCCCCcceeeEEEEEEEEecccc------c-ccccC
Q 010318 351 VKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD------N-AIFTA 420 (513)
Q Consensus 351 ~~V~~i~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~l~------~-~~i~~ 420 (513)
.+|.||+..+..+++|.||..+++.-. .+.+.|--.|.|+..++..|+..+.|+.+..+|+..- + .+|+.
T Consensus 273 T~i~Sl~ag~~~~~ea~PGGLvgvGT~lDP~ltKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~RvvG~~~e~kvepik~ 352 (415)
T COG5257 273 TEIVSLQAGGEDVEEARPGGLVGVGTKLDPTLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGTKEELKVEPIKT 352 (415)
T ss_pred EEEEEEEeCCeeeeeccCCceEEEecccCcchhhhhhhccccccCCCCCCCceEEEEEEeeehhhhhCcccccccccccC
Confidence 689999999999999999999999544 3455667789999999999999999999999965221 1 48999
Q ss_pred CcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEEeeecccccccceEEEEeC----Ce
Q 010318 421 GYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRTE----GK 496 (513)
Q Consensus 421 G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~~~~~~lgrfilr~~----g~ 496 (513)
|-..++.+++.+.-+.|.+... -.+++.|.+|+|.+.. .|..|-+. =|
T Consensus 353 ~E~Lml~VGtatT~GvV~~~k~----------------------d~~ev~Lk~Pvcae~g------~rvaisRri~~rWR 404 (415)
T COG5257 353 NEVLMLNVGTATTVGVVTSAKK----------------------DEIEVKLKRPVCAEIG------ERVAISRRIGNRWR 404 (415)
T ss_pred CCeEEEEeecceeEEEEEEecC----------------------ceEEEEeccceecCCC------CEEEEEeeecceEE
Confidence 9999999999998888875421 1578889999999875 35555321 28
Q ss_pred EEEEEEEEe
Q 010318 497 TVAVGKVTE 505 (513)
Q Consensus 497 tva~G~V~~ 505 (513)
.+|+|.|..
T Consensus 405 LIG~G~ik~ 413 (415)
T COG5257 405 LIGYGTIKE 413 (415)
T ss_pred EEeEEEEec
Confidence 999999875
No 31
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-44 Score=354.38 Aligned_cols=369 Identities=37% Similarity=0.645 Sum_probs=332.5
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.+.+++++++||+++||||+.+ +.+|.++.+.+.++++++.+.|+++|.|+|++|....|+++|++++.....|++.
T Consensus 4 ~~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~ 80 (391)
T KOG0052|consen 4 EKIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETS 80 (391)
T ss_pred cccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccce
Confidence 4678999999999999999997 7889999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
.+.++++|.|||.+|.++|+.+.+++|.++++|.+..|.||++....+||++|+.++..+|+.++|+.+||||.....|+
T Consensus 81 k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~s 160 (391)
T KOG0052|consen 81 KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYS 160 (391)
T ss_pred eEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999878888
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEEE
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIID 318 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~ 318 (513)
+.++.++......+.+..++++ . .. ..+
T Consensus 161 ~~r~~ei~k~~~~~~~~~g~n~-----------------~-----------------~~------------------~~~ 188 (391)
T KOG0052|consen 161 EARYEEIKKEVSSYIKKIGYNP-----------------A-----------------AV------------------LQD 188 (391)
T ss_pred ccchhhhheeeeeeeeccccCC-----------------h-----------------hh------------------hcc
Confidence 8899888777666555555431 0 00 122
Q ss_pred EEc--cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEccCC-C
Q 010318 319 KFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA-K 395 (513)
Q Consensus 319 ~~~--~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~-~ 395 (513)
+++ +.| +..|.++.++.+...|.....++++..+++..-.++.+|+.|+++..+++..++++|.++.+.. .
T Consensus 189 ~~~~~g~~------~~t~iie~~~~v~~~~~~~~~~vk~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~~ 262 (391)
T KOG0052|consen 189 VYKIGGIG------VETGISEPGMDVTFAPSGVTTEVKSVKVHHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKND 262 (391)
T ss_pred ceeeccee------eeeeeccCccceeccccccccccccEEEEeccCccCCCcceeeeecccCccCcccccceecccccC
Confidence 221 222 7788899999999998888889999999988888999999999999999999999999999877 4
Q ss_pred CcceeeEEEEEEEEeccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcce
Q 010318 396 PVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 474 (513)
Q Consensus 396 ~~~~~~~f~a~i~~~~~l~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~p 474 (513)
|+.-...|.|++.+ +.| ..|..||.|++.||+.++.|++..|..++|..+|+..+..|+++++++.+.+...+.+|
T Consensus 263 p~~~~~g~t~qvii---lnhpgqis~gy~pvldcht~hiacKfael~~Kid~~sg~~~e~~pk~~~~~daai~~~vp~kp 339 (391)
T KOG0052|consen 263 PPVEAAGFTAQVII---LNHPGQISVGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDEPKFLKSGDAAIVEMVPGKP 339 (391)
T ss_pred CccccccceeeEEE---ecCccccCCCccccccccccceeeehhhchhhhhcCCceeecCCCccccCCcceeeeeccCCc
Confidence 55666779999999 556 78999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecccccccceEEEEeCCeEEEEEEEEecCCCCC
Q 010318 475 ICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVSS 511 (513)
Q Consensus 475 i~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~~~~~ 511 (513)
+|++.|++++.||||.+|+...|+|.|+|..+.....
T Consensus 340 ~~ve~~~~~~~l~rfav~d~~~tvavgvikav~k~~~ 376 (391)
T KOG0052|consen 340 LCVESFSDYVPLGRFAVRDMRQTVAVGVIKAVDKKDA 376 (391)
T ss_pred cccccccccccccchhhhhhhccccccceeeeeeccc
Confidence 9999999999999999999999999999998876554
No 32
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=6.7e-40 Score=352.92 Aligned_cols=279 Identities=24% Similarity=0.344 Sum_probs=230.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeE
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 161 (513)
.+||+|+||+|||||||+++|++.+|.+..... .-.+++|+.++|+++|+|+......+.|.+++
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~---------------v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~k 65 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEA---------------VAERVMDSNDLERERGITILAKNTAIRYNGTK 65 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCccccc---------------ceeecccCchHHHhCCccEEeeeEEEEECCEE
Confidence 379999999999999999999999998765320 11368999999999999999999999999999
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHH
Q 010318 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 241 (513)
Q Consensus 162 i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~ 241 (513)
|+|||||||.+|...+.++++.+|++||||||.+|.+ +||++++..+...++| +|||+||||++.. +
T Consensus 66 inlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~-------~qT~~~l~~a~~~~ip-~IVviNKiD~~~a-----~ 132 (594)
T TIGR01394 66 INIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPM-------PQTRFVLKKALELGLK-PIVVINKIDRPSA-----R 132 (594)
T ss_pred EEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCc-------HHHHHHHHHHHHCCCC-EEEEEECCCCCCc-----C
Confidence 9999999999999999999999999999999999854 7999999999999999 7899999999433 3
Q ss_pred HHHHHhhhHhhhhhccCcc-cCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEEEEE
Q 010318 242 YDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF 320 (513)
Q Consensus 242 ~~~i~~~l~~~l~~~g~~~-~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~ 320 (513)
+.++.+++..++..++... ...+|++++||++|.+...+.. ..+.-.+.|..+++.+|.|..+.+.||++.|.+++
T Consensus 133 ~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~---~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~ 209 (594)
T TIGR01394 133 PDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDD---PSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLD 209 (594)
T ss_pred HHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcc---cccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEE
Confidence 4566677777776665431 1247899999999987554311 11111122445667788887778899999999987
Q ss_pred --ccCCeEEEEEEEeeeecCCCEEEEecCC---cEEEEEEEEEC----CeeecccCCCCeEEEEeccCCcccceeeeEEc
Q 010318 321 --KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 391 (513)
Q Consensus 321 --~~~G~vv~g~v~sG~l~~gd~v~~~p~~---~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 391 (513)
+..|+++.|+|.+|+|+.||.|++.|.+ ...+|++|+.+ +.++++|.|||+|++ .++ .++.+|++||
T Consensus 210 ~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i--~gl--~~i~~Gdtl~ 285 (594)
T TIGR01394 210 YDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAV--AGL--EDINIGETIA 285 (594)
T ss_pred eeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEE--eCC--cccCCCCEEe
Confidence 5789999999999999999999999874 25789999875 679999999999996 465 4689999999
Q ss_pred cCCC
Q 010318 392 SVAK 395 (513)
Q Consensus 392 ~~~~ 395 (513)
++++
T Consensus 286 ~~~~ 289 (594)
T TIGR01394 286 DPEV 289 (594)
T ss_pred CCCc
Confidence 8874
No 33
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=100.00 E-value=1.9e-38 Score=304.07 Aligned_cols=218 Identities=64% Similarity=1.049 Sum_probs=197.2
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
||+++||+|||||||+++|++.+|.++...++++++.+...|.+++.+++++|..++|+++|+|++.....|++.++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 68999999999999999999999999999888999888899999999999999999999999999999999999999999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHH
Q 010318 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 243 (513)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~ 243 (513)
|+|||||.+|...++.+++.+|++|+|||+.++.++..|....|+.+++.++..++++++|||+||||+...+|++..++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999999876666656689999999998888776999999999965567788899
Q ss_pred HHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCC
Q 010318 244 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEIT 304 (513)
Q Consensus 244 ~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~ 304 (513)
.+.+++..+++.+++.. ..++++|+||++|.|+.+..+ .++||+|++|++.|+.+.++
T Consensus 161 ~i~~~l~~~l~~~~~~~-~~~~ii~iSA~tg~gi~~~~~--~~~w~~g~~l~~~l~~~~~~ 218 (219)
T cd01883 161 EIKKELSPFLKKVGYNP-KDVPFIPISGLTGDNLIEKSE--NMPWYKGPTLLEALDSLEPP 218 (219)
T ss_pred HHHHHHHHHHHHcCCCc-CCceEEEeecCcCCCCCcCCC--CCCCccCCcHHHHHhCCCCC
Confidence 99999998999887752 257999999999999997654 59999999999999987553
No 34
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-38 Score=300.93 Aligned_cols=347 Identities=24% Similarity=0.364 Sum_probs=267.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 158 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-- 158 (513)
-.+|++++||+|||||||..+|... + .....|..+..++||+|.+.++..+...
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~-~-----------------------STaAFDk~pqS~eRgiTLDLGFS~~~v~~p 61 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSEL-G-----------------------STAAFDKHPQSTERGITLDLGFSTMTVLSP 61 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhh-c-----------------------cchhhccCCcccccceeEeecceeeecccc
Confidence 3589999999999999999998321 1 1224577788889999999999887542
Q ss_pred -------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 159 -------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 159 -------~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
.-+++|+|+|||...+++.+.|+...|..+||||+..| .+.||.|++.+...+-- ++||++||+|
T Consensus 62 arLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG-------~QtQtAEcLiig~~~c~-klvvvinkid 133 (522)
T KOG0461|consen 62 ARLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKG-------KQTQTAECLIIGELLCK-KLVVVINKID 133 (522)
T ss_pred cccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcc-------cccccchhhhhhhhhcc-ceEEEEeccc
Confidence 24579999999999999999999999999999999999 46899999988777754 4899999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccc----cccccccccCCCCCCCcchHHHHhh-hccCCCC
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG----LNMKTRVDKSLCPWWNGPCLFEALD-RIEITPR 306 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g----~gi~~l~~~~~~~w~~g~~L~~~l~-~l~~~~~ 306 (513)
....+..+...++....+++-|+..+|. ++.|++++||..| ++|.+ |.++|. .+-.|.+
T Consensus 134 ~lpE~qr~ski~k~~kk~~KtLe~t~f~--g~~PI~~vsa~~G~~~~~~i~e--------------L~e~l~s~if~P~R 197 (522)
T KOG0461|consen 134 VLPENQRASKIEKSAKKVRKTLESTGFD--GNSPIVEVSAADGYFKEEMIQE--------------LKEALESRIFEPKR 197 (522)
T ss_pred cccchhhhhHHHHHHHHHHHHHHhcCcC--CCCceeEEecCCCccchhHHHH--------------HHHHHHHhhcCCCc
Confidence 8666666677888888999999999886 5789999999999 56655 455554 3677899
Q ss_pred CCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccc
Q 010318 307 DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDI 384 (513)
Q Consensus 307 ~~~~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i 384 (513)
+..+||.|.|+++| +|.|+|.+|+|.+|.|+.|+.|.+...+..-+||++++++++|.+|.+|+++++.+...+..-+
T Consensus 198 d~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf~~~vtsa~~GdR~g~cVtqFd~kll 277 (522)
T KOG0461|consen 198 DEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMFKQRVTSAAAGDRAGFCVTQFDEKLL 277 (522)
T ss_pred CCCCCeEEEeeeeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHHHhhhhhhhhcccceeeeeeccCHHHH
Confidence 99999999999998 8999999999999999999999998888888999999999999999999999999998888888
Q ss_pred eeeeEEccCCCCcceeeEEEEEEEEecccc--cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCc----------cc
Q 010318 385 LSGFVLSSVAKPVAAVTEFIAQLQILELLD--NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKK----------PM 452 (513)
Q Consensus 385 ~~G~vl~~~~~~~~~~~~f~a~i~~~~~l~--~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~----------~~ 452 (513)
.||-+ +.++ ...+ ..|-+..+..+. ..+|..-.+.-+-++..++.+.+. +.+..|.-+.. ..
T Consensus 278 eRgi~-~~pg-~Lk~---~~avl~~vepI~yfr~~i~sk~K~Hi~VgheTVMa~~~-ff~d~d~~~~tf~~~kEye~~E~ 351 (522)
T KOG0461|consen 278 ERGIC-GPPG-TLKS---TKAVLATVEPIQYFRKSINSKSKIHIAVGHETVMAECQ-FFKDTDGTTSTFQLDKEYENGEF 351 (522)
T ss_pred hcccc-CCCc-ccce---eeeeeEeecchHHHhhhhhhcceEEEEehhhhhhhheE-EeeccCCcccccccchhhhcccc
Confidence 89843 4443 2233 333333332222 144544444333344444455544 22222211100 01
Q ss_pred cccceeecCCcEEEEEEEEcceEEeeecc
Q 010318 453 KKKVLFVKNGAIVVCRIQVNNSICTEKFA 481 (513)
Q Consensus 453 ~~~~~~l~~g~~~~v~~~~~~pi~~e~~~ 481 (513)
.--|..+.+.+...+-|+|++|+.+.+|+
T Consensus 352 d~~Pa~~~~~~~~~aL~~FEkpv~~P~~s 380 (522)
T KOG0461|consen 352 DMLPALLAPCDVIQALFSFEKPVFLPEYS 380 (522)
T ss_pred ccChhhcCCchheeeeeeecccccCcccc
Confidence 22366788888899999999999988764
No 35
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-38 Score=319.28 Aligned_cols=266 Identities=23% Similarity=0.329 Sum_probs=226.9
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.+|++|+.|+|||||||.++||..+|.++.+..++ .+||..+.||+||||+..-...+.|.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~----------------q~LDkl~vERERGITIkaQtasify~~ 121 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQE----------------QVLDKLQVERERGITIKAQTASIFYKD 121 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchh----------------hhhhhhhhhhhcCcEEEeeeeEEEEEc
Confidence 6789999999999999999999999999888765443 579999999999999999888888877
Q ss_pred ---eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010318 160 ---TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 ---~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 236 (513)
+.+++||||||.||..+..+.+..||++||||||.+|+ +.||...++++...|+. +|.|+||+|++.++
T Consensus 122 ~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGv-------qAQT~anf~lAfe~~L~-iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 122 GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGV-------QAQTVANFYLAFEAGLA-IIPVLNKIDLPSAD 193 (650)
T ss_pred CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCc-------hHHHHHHHHHHHHcCCe-EEEeeeccCCCCCC
Confidence 99999999999999999999999999999999999995 48999999999999998 99999999997775
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEE
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 316 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i 316 (513)
.+++..++...+... ..+++.+||++|.|+.++ |.+.++.+|+|....+.|||+.+
T Consensus 194 -----pe~V~~q~~~lF~~~------~~~~i~vSAK~G~~v~~l-------------L~AII~rVPpP~~~~d~plr~Li 249 (650)
T KOG0462|consen 194 -----PERVENQLFELFDIP------PAEVIYVSAKTGLNVEEL-------------LEAIIRRVPPPKGIRDAPLRMLI 249 (650)
T ss_pred -----HHHHHHHHHHHhcCC------ccceEEEEeccCccHHHH-------------HHHHHhhCCCCCCCCCcchHHHh
Confidence 335555555554432 347999999999999985 66788999999999999999999
Q ss_pred EEEEc--cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC---CeeecccCCCCeEEEEeccCC-cccceeeeEE
Q 010318 317 IDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGIE-EEDILSGFVL 390 (513)
Q Consensus 317 ~~~~~--~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~---~~~v~~a~aG~~v~i~l~~~~-~~~i~~G~vl 390 (513)
.+.|. -+|.++.++|..|.++.||+|..+.+++...|+.+..+ ..++....+||...|.. ++. ..+.+.|+++
T Consensus 250 fds~yD~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~-~mr~~~ea~IGdTi 328 (650)
T KOG0462|consen 250 FDSEYDEYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIIC-NMRNVKEAQIGDTI 328 (650)
T ss_pred hhhhhhhhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEe-ccccccccccccee
Confidence 99873 48999999999999999999999999887777777665 34566666666655532 332 5678899999
Q ss_pred ccCC
Q 010318 391 SSVA 394 (513)
Q Consensus 391 ~~~~ 394 (513)
++..
T Consensus 329 ~~~~ 332 (650)
T KOG0462|consen 329 AHKS 332 (650)
T ss_pred eecc
Confidence 8865
No 36
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-37 Score=305.64 Aligned_cols=281 Identities=24% Similarity=0.355 Sum_probs=232.1
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
+..+||||+.|||||||||++.||.++|.+..++ ..-..+||....|+++||||-.....+.|++
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e---------------~v~ERvMDSnDlEkERGITILaKnTav~~~~ 67 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFRERE---------------EVAERVMDSNDLEKERGITILAKNTAVNYNG 67 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhcccccccc---------------chhhhhcCccchhhhcCcEEEeccceeecCC
Confidence 4678999999999999999999999999887653 1234689999999999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
++|+|+|||||.+|-....+.++..|.++|+|||.+|.+ +||+..+.-+.++|++ .||||||+|++.+.
T Consensus 68 ~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpM-------PQTrFVlkKAl~~gL~-PIVVvNKiDrp~Ar--- 136 (603)
T COG1217 68 TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-------PQTRFVLKKALALGLK-PIVVINKIDRPDAR--- 136 (603)
T ss_pred eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCC-------CchhhhHHHHHHcCCC-cEEEEeCCCCCCCC---
Confidence 999999999999999999999999999999999999976 7999999999999998 68999999997653
Q ss_pred HHHHHHHhhhHhhhhhccCcc-cCCeeEEEeecccccccccccccCCCCCCCcchHH-HHhhhccCCCCCCCCCceEEEE
Q 010318 240 ERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLF-EALDRIEITPRDPNGPFRMPII 317 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~~-~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~-~~l~~l~~~~~~~~~~~~~~i~ 317 (513)
-+++.+++..++-.++-.. +-++|++..||+.|.--.++-+... --.| |+ ..++.+|.|..+.+.||++.|.
T Consensus 137 --p~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~---~m~p-Lfe~I~~hvp~P~~~~d~PlQ~qvt 210 (603)
T COG1217 137 --PDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEAD---DMAP-LFETILDHVPAPKGDLDEPLQMQVT 210 (603)
T ss_pred --HHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCcccccc---chhH-HHHHHHHhCCCCCCCCCCCeEEEEE
Confidence 4456666666676665431 2367999999999975433322100 0112 44 4677899999899999999998
Q ss_pred EE-E-ccCCeEEEEEEEeeeecCCCEEEEecCC---cEEEEEEEEEC----CeeecccCCCCeEEEEeccCCcccceeee
Q 010318 318 DK-F-KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 388 (513)
Q Consensus 318 ~~-~-~~~G~vv~g~v~sG~l~~gd~v~~~p~~---~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 388 (513)
.. | .-.|.+..|||.+|++++||.+.+...+ ...+|..+..+ +.++++|.||++|+ +.|+. ++..|+
T Consensus 211 ~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVa--iaG~~--~~~igd 286 (603)
T COG1217 211 QLDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVA--IAGLE--DINIGD 286 (603)
T ss_pred eeccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEE--EcCcc--cccccc
Confidence 65 2 4579999999999999999999887654 46788888766 67899999999999 57774 488999
Q ss_pred EEccCCCC
Q 010318 389 VLSSVAKP 396 (513)
Q Consensus 389 vl~~~~~~ 396 (513)
++|+++++
T Consensus 287 Ti~d~~~~ 294 (603)
T COG1217 287 TICDPDNP 294 (603)
T ss_pred cccCCCCc
Confidence 99999743
No 37
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=4.6e-37 Score=330.42 Aligned_cols=279 Identities=23% Similarity=0.330 Sum_probs=227.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...+||+|+||+|||||||+++|++..|.+..... .-.+++|..+.|+++|+|+......+.+++
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~---------------~~~~v~D~~~~E~erGiTi~~~~~~i~~~~ 67 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAE---------------TQERVMDSNDLEKERGITILAKNTAIKWND 67 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccc---------------cceeeeccccccccCceEEEEEEEEEecCC
Confidence 35789999999999999999999998887654320 013789999999999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
+.++|+|||||.+|...+.++++.+|++|||||+.+|.. .||+.++..+..+++| +||++||||++.+
T Consensus 68 ~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~-------~qt~~~l~~a~~~gip-~IVviNKiD~~~a---- 135 (607)
T PRK10218 68 YRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPM-------PQTRFVTKKAFAYGLK-PIVVINKVDRPGA---- 135 (607)
T ss_pred EEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCcc-------HHHHHHHHHHHHcCCC-EEEEEECcCCCCC----
Confidence 999999999999999999999999999999999999854 6999999999999999 7899999999544
Q ss_pred HHHHHHHhhhHhhhhhccCcc-cCCeeEEEeeccccccccccccc--CCCCCCCcchHHHHhhhccCCCCCCCCCceEEE
Q 010318 240 ERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVDK--SLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 316 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~~-~~~~~iipiSa~~g~gi~~l~~~--~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i 316 (513)
++..+.+++..++..++... ..++|++++||++|.|..++... ...+| |..+++.+|.|.++.+.||++.|
T Consensus 136 -~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~L-----ld~Ii~~iP~P~~~~~~Pl~~~V 209 (607)
T PRK10218 136 -RPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPL-----YQAIVDHVPAPDVDLDGPFQMQI 209 (607)
T ss_pred -chhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHH-----HHHHHHhCCCCCCCCCCCeEEEE
Confidence 34456666666665544321 23579999999999975443210 01122 33566778888878889999999
Q ss_pred EEEE--ccCCeEEEEEEEeeeecCCCEEEEecC-Cc--EEEEEEEEEC----CeeecccCCCCeEEEEeccCCcccceee
Q 010318 317 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPN-KA--QVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 387 (513)
Q Consensus 317 ~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~-~~--~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G 387 (513)
.+++ +..|++++|||.+|+|+.||.|++.+. +. ..+|.+|+.. +.++++|.|||+|++ .|+ .++..|
T Consensus 210 ~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~~G 285 (607)
T PRK10218 210 SQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAI--TGL--GELNIS 285 (607)
T ss_pred EeeEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEE--ECc--cccccC
Confidence 9986 568999999999999999999999876 33 5788888754 678999999999994 555 458899
Q ss_pred eEEccCCC
Q 010318 388 FVLSSVAK 395 (513)
Q Consensus 388 ~vl~~~~~ 395 (513)
|+||++++
T Consensus 286 dTl~~~~~ 293 (607)
T PRK10218 286 DTVCDTQN 293 (607)
T ss_pred cEEecCCC
Confidence 99998763
No 38
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=6.4e-37 Score=330.69 Aligned_cols=267 Identities=22% Similarity=0.384 Sum_probs=219.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 158 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-- 158 (513)
..+||+++||+|||||||+++|++.+|.++.+. ...+.+|+.+.|+++|+|+......+.|.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~----------------~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~ 65 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISERE----------------MREQVLDSMDLERERGITIKAQAVRLNYKAK 65 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccc----------------ccccccCCChHHHhcCCCeeeeEEEEEEEcC
Confidence 578999999999999999999999998876532 12467899999999999999988777663
Q ss_pred ---CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC
Q 010318 159 ---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 159 ---~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 235 (513)
.+.++|||||||.+|...+.++++.||++|||+|+++|. +.|+.+++..+...++| +|+|+||+|+...
T Consensus 66 ~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~-------~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~ 137 (595)
T TIGR01393 66 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGI-------EAQTLANVYLALENDLE-IIPVINKIDLPSA 137 (595)
T ss_pred CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCC-------CHhHHHHHHHHHHcCCC-EEEEEECcCCCcc
Confidence 278999999999999999999999999999999999985 36899999888888999 8999999999433
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEE
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 315 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~ 315 (513)
+ .+++.+++... +++. ...++++||++|.|+.++ |..+++.++.|..+.+.||++.
T Consensus 138 ~-----~~~~~~el~~~---lg~~---~~~vi~vSAktG~GI~~L-------------le~I~~~lp~p~~~~~~pl~~~ 193 (595)
T TIGR01393 138 D-----PERVKKEIEEV---IGLD---ASEAILASAKTGIGIEEI-------------LEAIVKRVPPPKGDPDAPLKAL 193 (595)
T ss_pred C-----HHHHHHHHHHH---hCCC---cceEEEeeccCCCCHHHH-------------HHHHHHhCCCCCCCCCCCeEEE
Confidence 2 12233333332 2332 125899999999999985 3334566788888888999999
Q ss_pred EEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECC---eeecccCCCCeEEEEeccCC-cccceeeeE
Q 010318 316 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD---NRVRHAGPGENLRIRLSGIE-EEDILSGFV 389 (513)
Q Consensus 316 i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~---~~v~~a~aG~~v~i~l~~~~-~~~i~~G~v 389 (513)
|.+++ ++.|++++|+|.+|+|+.||+|++.|.+...+|++|..++ .+++++.||| +++.+.|+. ..++++||+
T Consensus 194 V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGd-Ig~i~~~~~~~~~~~~Gdt 272 (595)
T TIGR01393 194 IFDSHYDNYRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKLTKTDELSAGE-VGYIIAGIKDVSDVRVGDT 272 (595)
T ss_pred EEEEEEeCCCcEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCceECCEEcCCC-EEEEeccccccCccCCCCE
Confidence 99998 5789999999999999999999999999999999999775 7889999999 454456663 367999999
Q ss_pred EccCCCC
Q 010318 390 LSSVAKP 396 (513)
Q Consensus 390 l~~~~~~ 396 (513)
|++.+++
T Consensus 273 l~~~~~~ 279 (595)
T TIGR01393 273 ITHVKNP 279 (595)
T ss_pred EECCCCc
Confidence 9987643
No 39
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=5.6e-37 Score=331.44 Aligned_cols=268 Identities=24% Similarity=0.395 Sum_probs=221.3
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC-
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~- 158 (513)
.+.+||+|+||+|||||||+++|++.+|.++.+.+ ..+++|+.+.|+++|+|+......+.|.
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~----------------~~~~lD~~~~ErerGiTi~~~~v~~~~~~ 68 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREM----------------KAQVLDSMDLERERGITIKAQAVRLNYKA 68 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCccccc----------------ccccccCchHHhhcCCcccccEEEEEEEc
Confidence 46789999999999999999999999998775421 2578999999999999999888877664
Q ss_pred ----CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCC
Q 010318 159 ----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 ----~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~ 234 (513)
++.++|||||||.+|...+.++++.+|++|||||+++|+ +.||.+++.++...++| +|+|+||+|+..
T Consensus 69 ~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv-------~~qt~~~~~~~~~~~lp-iIvViNKiDl~~ 140 (600)
T PRK05433 69 KDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQTLANVYLALENDLE-IIPVLNKIDLPA 140 (600)
T ss_pred cCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCC-------CHHHHHHHHHHHHCCCC-EEEEEECCCCCc
Confidence 688999999999999999999999999999999999984 36899999998889999 899999999943
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceE
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 314 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~ 314 (513)
.+ ++.+.+++... +++. ...++++||++|.|+.++ |..++..++.|..+.+.||++
T Consensus 141 a~-----~~~v~~ei~~~---lg~~---~~~vi~iSAktG~GI~~L-------------l~~I~~~lp~P~~~~~~pl~~ 196 (600)
T PRK05433 141 AD-----PERVKQEIEDV---IGID---ASDAVLVSAKTGIGIEEV-------------LEAIVERIPPPKGDPDAPLKA 196 (600)
T ss_pred cc-----HHHHHHHHHHH---hCCC---cceEEEEecCCCCCHHHH-------------HHHHHHhCccccCCCCCCceE
Confidence 32 22333344332 2332 235899999999999985 233446678887788899999
Q ss_pred EEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC---CeeecccCCCCeEEEEeccCC-cccceeee
Q 010318 315 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGIE-EEDILSGF 388 (513)
Q Consensus 315 ~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~---~~~v~~a~aG~~v~i~l~~~~-~~~i~~G~ 388 (513)
.|.+++ ++.|++++|+|.+|+|+.||+|++.|.+...+|.+|..+ ..+++++.|||++.+ +.++. ..++++||
T Consensus 197 ~Vfd~~~d~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~~~~~v~~~~aGdIg~i-~~~ik~~~~~~~Gd 275 (600)
T PRK05433 197 LIFDSWYDNYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTPKMVPVDELSAGEVGYI-IAGIKDVRDARVGD 275 (600)
T ss_pred EEEEEEecCCCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCCCceECcEEcCCCEEEE-ecccccccccCCCC
Confidence 999987 578999999999999999999999999999999999875 578999999995554 45553 36799999
Q ss_pred EEccCCCC
Q 010318 389 VLSSVAKP 396 (513)
Q Consensus 389 vl~~~~~~ 396 (513)
+|++..++
T Consensus 276 tl~~~~~~ 283 (600)
T PRK05433 276 TITLAKNP 283 (600)
T ss_pred EEECCCCc
Confidence 99887643
No 40
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=100.00 E-value=9.5e-37 Score=290.06 Aligned_cols=207 Identities=36% Similarity=0.628 Sum_probs=187.5
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
+|+++||+|||||||+++|++.+|.+..+.+.+++++....++.++.+++++|..+.|+++|+|++.....+++.+..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999999999999988888888888888888888999999999999999999999999999999999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHH
Q 010318 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 243 (513)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~ 243 (513)
|+|||||.+|...+..++..+|++|+|||+..+.. .++++++.++...+.|++|+|+||||+ .++.+..+.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-------~~~~~~~~~~~~~~~~~iIvviNK~D~--~~~~~~~~~ 151 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVL-------EQTRRHSYILSLLGIRHVVVAVNKMDL--VDYSEEVFE 151 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-------HhHHHHHHHHHHcCCCcEEEEEEchhc--ccCCHHHHH
Confidence 99999999999999999999999999999999853 588888888888888768889999999 566677788
Q ss_pred HHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCC
Q 010318 244 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEIT 304 (513)
Q Consensus 244 ~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~ 304 (513)
.+..++..+++.+++. ..+++|+||++|.|+.+... .++||.|+||+++|+.++++
T Consensus 152 ~i~~~~~~~~~~~~~~---~~~ii~iSA~~g~ni~~~~~--~~~w~~g~~~~~~~~~~~~~ 207 (208)
T cd04166 152 EIVADYLAFAAKLGIE---DITFIPISALDGDNVVSRSE--NMPWYSGPTLLEHLETVPIA 207 (208)
T ss_pred HHHHHHHHHHHHcCCC---CceEEEEeCCCCCCCccCCC--CCCCCCCCcHHHHHhcCCCC
Confidence 8888998888888864 46899999999999998764 59999999999999998875
No 41
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.3e-36 Score=300.99 Aligned_cols=267 Identities=22% Similarity=0.381 Sum_probs=230.0
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
..++.+|++|+.|.|||||||.++|+..+|.++.+.|+. .++|....||+|||||......+.+
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~----------------Q~LDsMdiERERGITIKaq~v~l~Y 68 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRA----------------QVLDSMDIERERGITIKAQAVRLNY 68 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHH----------------HhhhhhhhHhhcCceEEeeEEEEEE
Confidence 346789999999999999999999999999999998753 5789999999999999998877665
Q ss_pred C-----CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 158 E-----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 158 ~-----~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
. .|.++|||||||-+|.-...++++.|.++||||||++|+ +.||....+++...++. +|-|+||+|+
T Consensus 69 k~~~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGv-------eAQTlAN~YlAle~~Le-IiPViNKIDL 140 (603)
T COG0481 69 KAKDGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGV-------EAQTLANVYLALENNLE-IIPVLNKIDL 140 (603)
T ss_pred EeCCCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccch-------HHHHHHHHHHHHHcCcE-EEEeeecccC
Confidence 3 488999999999999999999999999999999999995 58999999999999998 9999999999
Q ss_pred CCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCc
Q 010318 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPF 312 (513)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~ 312 (513)
+.++. ++++.++...+ |+. ....+.+||++|.|+.++ |.+.+..+|+|..+.+.|+
T Consensus 141 P~Adp-----ervk~eIe~~i---Gid---~~dav~~SAKtG~gI~~i-------------Le~Iv~~iP~P~g~~~~pL 196 (603)
T COG0481 141 PAADP-----ERVKQEIEDII---GID---ASDAVLVSAKTGIGIEDV-------------LEAIVEKIPPPKGDPDAPL 196 (603)
T ss_pred CCCCH-----HHHHHHHHHHh---CCC---cchheeEecccCCCHHHH-------------HHHHHhhCCCCCCCCCCcc
Confidence 87752 34445554433 443 346889999999999996 5678889999999999999
Q ss_pred eEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC---CeeecccCCCCeEEE--EeccCCcccce
Q 010318 313 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRI--RLSGIEEEDIL 385 (513)
Q Consensus 313 ~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~---~~~v~~a~aG~~v~i--~l~~~~~~~i~ 385 (513)
+..|.++| .-+|.++..||..|+|++||+|.++.+++...|..+..+ ..+.+...||+..-+ +++ +..+.+
T Consensus 197 kALifDS~yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP~~~~~~~L~aGeVG~~~a~iK--~v~d~~ 274 (603)
T COG0481 197 KALIFDSWYDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTPKMVKVDELKAGEVGYIIAGIK--DVRDAR 274 (603)
T ss_pred eEEEEeccccccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccCCccccccccCCceeEEEEeee--ecccCc
Confidence 99999987 347999999999999999999999999999999999886 467788999998776 344 346689
Q ss_pred eeeEEccCC
Q 010318 386 SGFVLSSVA 394 (513)
Q Consensus 386 ~G~vl~~~~ 394 (513)
.||+++...
T Consensus 275 VGDTiT~~~ 283 (603)
T COG0481 275 VGDTITLAS 283 (603)
T ss_pred ccceEeccC
Confidence 999998544
No 42
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-35 Score=297.94 Aligned_cols=252 Identities=27% Similarity=0.377 Sum_probs=200.2
Q ss_pred cCCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEE
Q 010318 77 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (513)
Q Consensus 77 ~~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~ 156 (513)
....+++.|.|+||||||||||+++|...... .....|||+.++.+..+
T Consensus 148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VA-------------------------------A~E~GGITQhIGAF~V~ 196 (683)
T KOG1145|consen 148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVA-------------------------------AGEAGGITQHIGAFTVT 196 (683)
T ss_pred hcCCCCCeEEEeecccCChhhHHHHHhhCcee-------------------------------hhhcCCccceeceEEEe
Confidence 34568999999999999999999999433221 11238999999998866
Q ss_pred e-CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC
Q 010318 157 T-ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 157 ~-~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 235 (513)
. ++..++|+|||||.-|..++.+|+..+|+++|||.|.+|++ +||.|.+..++..++| +||+|||+|.+++
T Consensus 197 ~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVm-------pQT~EaIkhAk~A~Vp-iVvAinKiDkp~a 268 (683)
T KOG1145|consen 197 LPSGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVM-------PQTLEAIKHAKSANVP-IVVAINKIDKPGA 268 (683)
T ss_pred cCCCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCcc-------HhHHHHHHHHHhcCCC-EEEEEeccCCCCC
Confidence 4 67899999999999999999999999999999999999987 7999999999999999 9999999999877
Q ss_pred CchHHHHHHHHhhhH---hhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCc
Q 010318 236 NWSKERYDEIESKMT---PFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPF 312 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~---~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~ 312 (513)
+.. .++.+|. -.+..+| +++++||+||++|.|++.|.++ ++- +..+..-..++..|+
T Consensus 269 ~pe-----kv~~eL~~~gi~~E~~G----GdVQvipiSAl~g~nl~~L~ea----------ill-~Ae~mdLkA~p~g~~ 328 (683)
T KOG1145|consen 269 NPE-----KVKRELLSQGIVVEDLG----GDVQVIPISALTGENLDLLEEA----------ILL-LAEVMDLKADPKGPA 328 (683)
T ss_pred CHH-----HHHHHHHHcCccHHHcC----CceeEEEeecccCCChHHHHHH----------HHH-HHHHhhcccCCCCCc
Confidence 632 2222221 1233343 5799999999999999987553 221 122223344678999
Q ss_pred eEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC-CeeecccCCCCeEEEEeccCCcccceeeeE
Q 010318 313 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFV 389 (513)
Q Consensus 313 ~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~-~~~v~~a~aG~~v~i~l~~~~~~~i~~G~v 389 (513)
...|.+.. +++|.+++..|..|+|+.|+.++. +...++||++..+ .+++++|.|++.|.+ .|+.. --..||.
T Consensus 329 eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~--G~~w~KVr~l~D~nGk~i~~A~Ps~pv~V--~Gwkd-lP~aGD~ 403 (683)
T KOG1145|consen 329 EGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVA--GKSWCKVRALFDHNGKPIDEATPSQPVEV--LGWKD-LPIAGDE 403 (683)
T ss_pred eEEEEEeeecCCccceeEEEEeccccccccEEEE--echhhhhhhhhhcCCCCccccCCCCceEe--ecccC-CCCCCce
Confidence 99999876 899999999999999999999998 5678899999877 789999999999996 44431 1236666
Q ss_pred Ecc
Q 010318 390 LSS 392 (513)
Q Consensus 390 l~~ 392 (513)
+..
T Consensus 404 vle 406 (683)
T KOG1145|consen 404 VLE 406 (683)
T ss_pred EEE
Confidence 544
No 43
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-35 Score=298.68 Aligned_cols=234 Identities=28% Similarity=0.429 Sum_probs=190.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC-
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~- 158 (513)
.+++.|+++||+|||||||++.+...+-. .....|||++++.+.++++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va-------------------------------~~EaGGITQhIGA~~v~~~~ 51 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVA-------------------------------AGEAGGITQHIGAYQVPLDV 51 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccc-------------------------------cccCCceeeEeeeEEEEecc
Confidence 47899999999999999999999433321 2234899999999999985
Q ss_pred --CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010318 159 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 159 --~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 236 (513)
...++|||||||+-|..++.+|++.+|.+|||||+++|++ +||.|.+.++++.++| |||++||||++..+
T Consensus 52 ~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~-------pQTiEAI~hak~a~vP-~iVAiNKiDk~~~n 123 (509)
T COG0532 52 IKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVM-------PQTIEAINHAKAAGVP-IVVAINKIDKPEAN 123 (509)
T ss_pred CCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcc-------hhHHHHHHHHHHCCCC-EEEEEecccCCCCC
Confidence 4799999999999999999999999999999999999965 7999999999999999 99999999997665
Q ss_pred chHHHHHHHHhhhHhhhhhccCcc---cCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCce
Q 010318 237 WSKERYDEIESKMTPFLKASGYNV---KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFR 313 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~---~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~ 313 (513)
..+ +..+ |.+.|+.+ ..++.|||+||++|+|+.+|++. ...+.....-...++.+.+
T Consensus 124 p~~-----v~~e----l~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~-----------ill~aev~elka~~~~~a~ 183 (509)
T COG0532 124 PDK-----VKQE----LQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLEL-----------ILLLAEVLELKANPEGPAR 183 (509)
T ss_pred HHH-----HHHH----HHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHH-----------HHHHHHHHhhhcCCCCcce
Confidence 332 2222 22334432 35689999999999999997652 2222222233456788999
Q ss_pred EEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC-CeeecccCCCCeEEE
Q 010318 314 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRI 374 (513)
Q Consensus 314 ~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~-~~~v~~a~aG~~v~i 374 (513)
..|.++. +|.|.+++..|.+|+|++||.|+++. ...+|+.+... ..++..+.|+..+.+
T Consensus 184 gtviE~~~dkG~G~vatviv~~GtL~~GD~iv~g~--~~g~I~t~v~~~~~~i~~a~ps~~v~i 245 (509)
T COG0532 184 GTVIEVKLDKGLGPVATVIVQDGTLKKGDIIVAGG--EYGRVRTMVDDLGKPIKEAGPSKPVEI 245 (509)
T ss_pred EEEEEEEeccCCCceEEEEEecCeEecCCEEEEcc--CCCceEEeehhcCCCccccCCCCCeEE
Confidence 9999987 79999999999999999999999954 45788888765 678889988877775
No 44
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=4.4e-34 Score=307.09 Aligned_cols=249 Identities=29% Similarity=0.419 Sum_probs=194.5
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++||+|||||||+++|... .+. ....+|+|++.+...+.+.
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~--~v~-----------------------------~~e~~GIT~~ig~~~v~~~ 132 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKT--KVA-----------------------------QGEAGGITQHIGAYHVENE 132 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhC--Ccc-----------------------------cccCCceeecceEEEEEEC
Confidence 457789999999999999999999432 111 1123789999999888886
Q ss_pred Ce-EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 159 TT-RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 159 ~~-~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
+. .++|+|||||++|..++.++++.+|++|||+|+++|.+ +||.+++.+++..++| +||++||+|++..++
T Consensus 133 ~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~-------~qT~e~i~~~~~~~vP-iIVviNKiDl~~~~~ 204 (587)
T TIGR00487 133 DGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVM-------PQTIEAISHAKAANVP-IIVAINKIDKPEANP 204 (587)
T ss_pred CCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCC-------HhHHHHHHHHHHcCCC-EEEEEECcccccCCH
Confidence 55 99999999999999999999999999999999999854 7999999999999999 999999999965432
Q ss_pred hHHHHHHHHhhhHhhhhhccCc---ccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceE
Q 010318 238 SKERYDEIESKMTPFLKASGYN---VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 314 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~---~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~ 314 (513)
. ++.+.+ ...++. .....+++|+||++|.|+.++++. +. .+..+......++.|+++
T Consensus 205 e-----~v~~~L----~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~----------I~-~~~~~~~l~~~~~~~~~~ 264 (587)
T TIGR00487 205 D-----RVKQEL----SEYGLVPEDWGGDTIFVPVSALTGDGIDELLDM----------IL-LQSEVEELKANPNGQASG 264 (587)
T ss_pred H-----HHHHHH----HHhhhhHHhcCCCceEEEEECCCCCChHHHHHh----------hh-hhhhhccccCCCCCCcee
Confidence 1 222222 222221 012468999999999999997543 21 112233333456789999
Q ss_pred EEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEE-CCeeecccCCCCeEEEEeccCCcccceeeeEEc
Q 010318 315 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYC-DDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 391 (513)
Q Consensus 315 ~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~-~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 391 (513)
.|.+++ ++.|++++|+|.+|+|++||.|+++|. ..+|++|+. +++.+++|.||+.|.+ .|++. --..|+.+.
T Consensus 265 ~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~~~g~~v~~a~~g~~v~i--~Gl~~-~p~aGd~~~ 339 (587)
T TIGR00487 265 VVIEAQLDKGRGPVATVLVQSGTLRVGDIVVVGAA--YGRVRAMIDENGKSVKEAGPSKPVEI--LGLSD-VPAAGDEFI 339 (587)
T ss_pred EEEEEEEeCCCcEEEEEEEEeCEEeCCCEEEECCC--ccEEEEEECCCCCCCCEECCCCEEEE--eCCCC-CCCCCCEEE
Confidence 999998 689999999999999999999999885 579999998 5789999999999986 34432 125788876
No 45
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=4.4e-34 Score=313.52 Aligned_cols=249 Identities=27% Similarity=0.423 Sum_probs=196.9
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..++++|+++||+|||||||+++|+. +.+. ....+|+|++++.+.+.++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~--~~v~-----------------------------~~e~~GIT~~iga~~v~~~ 335 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRK--TNVA-----------------------------AGEAGGITQHIGAYQVETN 335 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHh--CCcc-----------------------------ccccCceeeeccEEEEEEC
Confidence 56889999999999999999999942 2111 1123789999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
++.++|||||||++|..++.++++.+|++|||||+++|.+ +||.+++.++...++| +|||+||||++.. +
T Consensus 336 ~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~-------~qT~e~i~~a~~~~vP-iIVviNKiDl~~a--~ 405 (787)
T PRK05306 336 GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVM-------PQTIEAINHAKAAGVP-IIVAINKIDKPGA--N 405 (787)
T ss_pred CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCC-------HhHHHHHHHHHhcCCc-EEEEEECcccccc--C
Confidence 9999999999999999999999999999999999999954 7999999999999999 9999999999433 3
Q ss_pred HHHHHHHHhhhHh---hhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEE
Q 010318 239 KERYDEIESKMTP---FLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMP 315 (513)
Q Consensus 239 ~~~~~~i~~~l~~---~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~ 315 (513)
.. .+..++.. +...++ .+++++|+||++|.|+.+|++. +....+.+ ......+.|+++.
T Consensus 406 ~e---~V~~eL~~~~~~~e~~g----~~vp~vpvSAktG~GI~eLle~----------I~~~~e~~-~l~~~~~~~~~g~ 467 (787)
T PRK05306 406 PD---RVKQELSEYGLVPEEWG----GDTIFVPVSAKTGEGIDELLEA----------ILLQAEVL-ELKANPDRPARGT 467 (787)
T ss_pred HH---HHHHHHHHhcccHHHhC----CCceEEEEeCCCCCCchHHHHh----------hhhhhhhh-hcccCCCCCcEEE
Confidence 22 22222221 112222 2479999999999999997653 11111111 2234567889999
Q ss_pred EEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC-CeeecccCCCCeEEEEeccCCcccc-eeeeEEc
Q 010318 316 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDI-LSGFVLS 391 (513)
Q Consensus 316 i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~-~~~v~~a~aG~~v~i~l~~~~~~~i-~~G~vl~ 391 (513)
|.+++ ++.|++++|+|.+|+|+.||.|++++ ...+|++|+.. +.++++|.||+.|.+ .|++. + ..||+|+
T Consensus 468 V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g~--~~gkVr~m~~~~~~~v~~A~pGd~V~I--~gl~~--~p~~Gd~l~ 541 (787)
T PRK05306 468 VIEAKLDKGRGPVATVLVQNGTLKVGDIVVAGT--TYGRVRAMVDDNGKRVKEAGPSTPVEI--LGLSG--VPQAGDEFV 541 (787)
T ss_pred EEEEEEcCCCeEEEEEEEecCeEecCCEEEECC--cEEEEEEEECCCCCCCCEEcCCCeEEE--eCCCC--CCCCCCEEE
Confidence 99987 68999999999999999999999965 57899999985 779999999999996 34432 3 6899988
Q ss_pred c
Q 010318 392 S 392 (513)
Q Consensus 392 ~ 392 (513)
.
T Consensus 542 ~ 542 (787)
T PRK05306 542 V 542 (787)
T ss_pred E
Confidence 4
No 46
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=1.7e-34 Score=270.78 Aligned_cols=192 Identities=32% Similarity=0.488 Sum_probs=164.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
++++|+++||+|||||||+++|++... ..|+......+.+|..++|+++|+|++.....|+++++
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~---------------~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~ 65 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLA---------------KKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANR 65 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHH---------------hcccccccccccccCChhhhhcCccEEeeeeEecCCCe
Confidence 358999999999999999999987542 12322222235789999999999999999999999999
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHH
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 240 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~ 240 (513)
+++|+|||||.+|.+.+.+++..+|++++|||+..|. ..|+++++.++..+++|++|+|+||||+ .+ .++
T Consensus 66 ~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~-------~~~~~~~~~~~~~~~~~~iIvviNK~D~--~~-~~~ 135 (195)
T cd01884 66 HYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGP-------MPQTREHLLLARQVGVPYIVVFLNKADM--VD-DEE 135 (195)
T ss_pred EEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCC-------cHHHHHHHHHHHHcCCCcEEEEEeCCCC--CC-cHH
Confidence 9999999999999999999999999999999999984 3799999999999999878899999999 43 456
Q ss_pred HHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCC-cchHHHHhhhccC
Q 010318 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN-GPCLFEALDRIEI 303 (513)
Q Consensus 241 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~-g~~L~~~l~~l~~ 303 (513)
.++.+.+++..+|+.+|++ ..+++++|+||++|.|+.+ .++||+ +++|+++|+++.+
T Consensus 136 ~~~~~~~~i~~~l~~~g~~-~~~v~iipiSa~~g~n~~~-----~~~w~~~~~~l~~~l~~~~~ 193 (195)
T cd01884 136 LLELVEMEVRELLSKYGFD-GDNTPIVRGSALKALEGDD-----PNKWVKKILELLDALDSYIP 193 (195)
T ss_pred HHHHHHHHHHHHHHHhccc-ccCCeEEEeeCccccCCCC-----CCcchhcHhHHHHHHHhCCC
Confidence 7778889999999999986 2368999999999999865 378997 7999999987643
No 47
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=7.3e-33 Score=307.73 Aligned_cols=290 Identities=22% Similarity=0.315 Sum_probs=220.5
Q ss_pred cCCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEE
Q 010318 77 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (513)
Q Consensus 77 ~~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~ 156 (513)
....+.+||+++||+|||||||+++|++.+|.+..+. .| .++++|+.++|++||+|++.+...+.
T Consensus 15 ~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiTi~~~~~~~~ 79 (731)
T PRK07560 15 KNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEEL----------AG-----EQLALDFDEEEQARGITIKAANVSMV 79 (731)
T ss_pred hchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhh----------cC-----cceecCccHHHHHhhhhhhccceEEE
Confidence 3456789999999999999999999999999877531 12 14679999999999999999887766
Q ss_pred e----CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 157 T----ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 157 ~----~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
| .++.++|||||||.+|...+.++++.+|++|+|||+..|+ +.||+.++.++...++| .|+++||||+
T Consensus 80 ~~~~~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~-------~~~t~~~~~~~~~~~~~-~iv~iNK~D~ 151 (731)
T PRK07560 80 HEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGV-------MPQTETVLRQALRERVK-PVLFINKVDR 151 (731)
T ss_pred EEecCCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCC-------CccHHHHHHHHHHcCCC-eEEEEECchh
Confidence 5 5788999999999999999999999999999999999995 47999999999999999 7899999998
Q ss_pred CCCC------chHHHHHHHHhhhHhhhhhcc---------CcccCCeeEEEeecccccccccc--ccc------------
Q 010318 233 HTVN------WSKERYDEIESKMTPFLKASG---------YNVKKDVQFLPISGLMGLNMKTR--VDK------------ 283 (513)
Q Consensus 233 ~~~~------~~~~~~~~i~~~l~~~l~~~g---------~~~~~~~~iipiSa~~g~gi~~l--~~~------------ 283 (513)
..++ ..+.++.++.+++..++..+. +.+. +-.++..||+.++++... .+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~-~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~ 230 (731)
T PRK07560 152 LIKELKLTPQEMQQRLLKIIKDVNKLIKGMAPEEFKEKWKVDVE-DGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYE 230 (731)
T ss_pred hcccccCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcceeecCC-CCcEeeeecccccceeHHHHHHhCCCHHHHHHHHh
Confidence 6443 234566666677766666442 1111 124667799998877510 000
Q ss_pred -----CCCCCCCc-chHHHHh-hhccCCCC-------------------------CCCCCceEEEEEEE--ccCCeEEEE
Q 010318 284 -----SLCPWWNG-PCLFEAL-DRIEITPR-------------------------DPNGPFRMPIIDKF--KDMGTVVMG 329 (513)
Q Consensus 284 -----~~~~w~~g-~~L~~~l-~~l~~~~~-------------------------~~~~~~~~~i~~~~--~~~G~vv~g 329 (513)
.+..|+.- ..|++.+ ..+|.|.. +.+.|+.+.|.+++ +..|.+++|
T Consensus 231 ~~~~~~l~~~~Pv~~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~ 310 (731)
T PRK07560 231 KGKQKELAEKAPLHEVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATG 310 (731)
T ss_pred cCCHHHHHhhccchhHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEE
Confidence 00001000 1244433 34566531 23457888898887 467999999
Q ss_pred EEEeeeecCCCEEEEecCCcEEEEEEEEEC----CeeecccCCCCeEEEEeccCCcccceeeeEEccCC
Q 010318 330 KVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (513)
Q Consensus 330 ~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (513)
||.+|+|+.||.|++.+.+...+|..|+.. ..++++|.||++|++ .|++ ++.+|++|+.+.
T Consensus 311 RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i--~gl~--~~~~GdtL~~~~ 375 (731)
T PRK07560 311 RVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAV--TGLK--DARAGETVVSVE 375 (731)
T ss_pred EEEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEE--Eccc--ccccCCEEeCCC
Confidence 999999999999999998888899999765 568999999999996 4553 477899998765
No 48
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=3.6e-32 Score=300.55 Aligned_cols=281 Identities=22% Similarity=0.267 Sum_probs=210.8
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.+||+|+||+|+|||||+++|++.+|.+..- |+.+ ..++++|+.+.|+++|+|++.....+.|.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~------------g~v~-~~~~~~D~~~~E~~rg~ti~~~~~~~~~~ 73 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKI------------GEVH-DGAATMDWMEQEQERGITITSAATTCFWK 73 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCcccc------------cccc-CCcccCCCCHHHHhCCCCEeccEEEEEEC
Confidence 3468999999999999999999999998876421 1111 13678999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
+++++|+|||||.+|...+.++++.+|++||||||..|+ +.||++++.++..+++| +|+++||||+...+
T Consensus 74 ~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~-------~~qt~~~~~~~~~~~~p-~iv~vNK~D~~~~~-- 143 (693)
T PRK00007 74 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGV-------EPQSETVWRQADKYKVP-RIAFVNKMDRTGAD-- 143 (693)
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCc-------chhhHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 999999999999999999999999999999999999995 47999999999999999 78999999996543
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccc-cccccccccCCCCC-----------------------------
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG-LNMKTRVDKSLCPW----------------------------- 288 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g-~gi~~l~~~~~~~w----------------------------- 288 (513)
+..+.++++..+...- ....+|+|+..+ .|+.++.......|
T Consensus 144 ---~~~~~~~i~~~l~~~~-----~~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (693)
T PRK00007 144 ---FYRVVEQIKDRLGANP-----VPIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKL 215 (693)
T ss_pred ---HHHHHHHHHHHhCCCe-----eeEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHH
Confidence 3344444444433211 235667776665 23332221111111
Q ss_pred ------------------------------------------CCc--------chHHH-HhhhccCCCC-----------
Q 010318 289 ------------------------------------------WNG--------PCLFE-ALDRIEITPR----------- 306 (513)
Q Consensus 289 ------------------------------------------~~g--------~~L~~-~l~~l~~~~~----------- 306 (513)
+.| ..|++ ++..+|.|..
T Consensus 216 ~e~v~e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~ 295 (693)
T PRK00007 216 IEAAAEADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDG 295 (693)
T ss_pred HHHHHccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCc
Confidence 000 11333 3334555531
Q ss_pred ---------CCCCCceEEEEEEEc--cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----CeeecccCCCCe
Q 010318 307 ---------DPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGEN 371 (513)
Q Consensus 307 ---------~~~~~~~~~i~~~~~--~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aG~~ 371 (513)
+++.|+.+.|..+.. ..|.+.++||.+|+|+.||+|+....++..+|.+|+.. ..++++|.||++
T Consensus 296 ~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI 375 (693)
T PRK00007 296 EEEEVERKASDDEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDI 375 (693)
T ss_pred cccceeecCCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcE
Confidence 235678889988873 56999999999999999999987656667788888764 578999999999
Q ss_pred EEEEeccCCcccceeeeEEccCC
Q 010318 372 LRIRLSGIEEEDILSGFVLSSVA 394 (513)
Q Consensus 372 v~i~l~~~~~~~i~~G~vl~~~~ 394 (513)
+++ .|++ +++.|++|++..
T Consensus 376 ~~i--~gl~--~~~~GdtL~~~~ 394 (693)
T PRK00007 376 AAA--VGLK--DTTTGDTLCDEK 394 (693)
T ss_pred EEE--eCCc--cCCcCCEeeCCC
Confidence 995 5553 468999998654
No 49
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.3e-32 Score=290.88 Aligned_cols=277 Identities=22% Similarity=0.290 Sum_probs=213.5
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.+||+|+||+|||||||..+||+.+|.+.... . -...+..||..+.|++||+||..+...+.|+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G------------~-v~~g~~~~D~~e~EqeRGITI~saa~s~~~~ 73 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIG------------E-VHDGAATMDWMEQEQERGITITSAATTLFWK 73 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCc------------c-ccCCCccCCCcHHHHhcCCEEeeeeeEEEEc
Confidence 46789999999999999999999999999887521 1 1123668999999999999999999999999
Q ss_pred C-eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 159 T-TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 159 ~-~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
+ ++|+|||||||-||.....++++.+|+||+||||..|+. +||...++++..+++| .|+++||||+..+++
T Consensus 74 ~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~-------~QTEtv~rqa~~~~vp-~i~fiNKmDR~~a~~ 145 (697)
T COG0480 74 GDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVE-------PQTETVWRQADKYGVP-RILFVNKMDRLGADF 145 (697)
T ss_pred CceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCee-------ecHHHHHHHHhhcCCC-eEEEEECccccccCh
Confidence 6 999999999999999999999999999999999999964 7999999999999999 678999999876654
Q ss_pred hHHHHHHHHhhhHh------------------------------------------------------------------
Q 010318 238 SKERYDEIESKMTP------------------------------------------------------------------ 251 (513)
Q Consensus 238 ~~~~~~~i~~~l~~------------------------------------------------------------------ 251 (513)
.. ..+++...+..
T Consensus 146 ~~-~~~~l~~~l~~~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l 224 (697)
T COG0480 146 YL-VVEQLKERLGANPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEEL 224 (697)
T ss_pred hh-hHHHHHHHhCCCceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHH
Confidence 21 11111111111
Q ss_pred ---hhhhcc-------------CcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCC----------
Q 010318 252 ---FLKASG-------------YNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITP---------- 305 (513)
Q Consensus 252 ---~l~~~g-------------~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~---------- 305 (513)
+|.... .....-+|++.-||.++.|+..++ ...++.+|.|.
T Consensus 225 ~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~gsa~kn~gv~~lL-------------dav~~~lPsP~e~~~~~g~~~ 291 (697)
T COG0480 225 MEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLCGSAFKNKGVQPLL-------------DAVVDYLPSPLDVPPIKGDLD 291 (697)
T ss_pred HHHHhcCCCccHHHHHHHHHHhhhccceeeEEeeecccCCcHHHHH-------------HHHHHHCCChhhcccccccCC
Confidence 000000 000113466666777776666542 23344455541
Q ss_pred ----------CCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----CeeecccCCC
Q 010318 306 ----------RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPG 369 (513)
Q Consensus 306 ----------~~~~~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aG 369 (513)
...+.|+.+.+..+. +..|.+.++||.||+|+.||+++....++..+|..|... +.+++++.||
T Consensus 292 ~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG 371 (697)
T COG0480 292 DEIEKAVLRKASDEGPLSALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAG 371 (697)
T ss_pred ccccchhcccCCCCCceEEEEEEeEecCCCCeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCc
Confidence 123688989888887 456898889999999999999999888888999999765 5689999999
Q ss_pred CeEEEEeccCCcccceeeeEEccCC
Q 010318 370 ENLRIRLSGIEEEDILSGFVLSSVA 394 (513)
Q Consensus 370 ~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (513)
+++++ .|++. ...|++||+..
T Consensus 372 ~I~a~--~Gl~~--~~tGdTl~~~~ 392 (697)
T COG0480 372 DIVAL--VGLKD--ATTGDTLCDEN 392 (697)
T ss_pred cEEEE--Ecccc--cccCCeeecCC
Confidence 99995 55543 58999999766
No 50
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=1.1e-31 Score=296.75 Aligned_cols=273 Identities=21% Similarity=0.240 Sum_probs=207.8
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.+||+|+||+|+|||||+++|++.+|.+... |+. ....+.+|+.++|+++|+|++.....++|+
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~------------~~v-~~~~~~~D~~~~E~~rgiti~~~~~~~~~~ 71 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKI------------GEV-HDGAATMDWMEQEQERGITITSAATTCFWK 71 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCcccc------------ccc-cCCccccCCChhHhhcCCCccceeEEEEEC
Confidence 3468999999999999999999999988875421 111 113578999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
+++++|+|||||.+|..++.++++.+|++|+||||..|+ +.||++++.++...++| +|+++||||+...+
T Consensus 72 ~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~-------~~qt~~i~~~~~~~~~p-~iv~iNK~D~~~~~-- 141 (691)
T PRK12739 72 GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGV-------EPQSETVWRQADKYGVP-RIVFVNKMDRIGAD-- 141 (691)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCC-------CHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC--
Confidence 999999999999999999999999999999999999984 47999999999999999 78999999995433
Q ss_pred HHHHHHHHhhhHhhhhhccCc-----------------------------------------------------------
Q 010318 239 KERYDEIESKMTPFLKASGYN----------------------------------------------------------- 259 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~----------------------------------------------------------- 259 (513)
+..+.+++...+....+.
T Consensus 142 ---~~~~~~~i~~~l~~~~~~~~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~ 218 (691)
T PRK12739 142 ---FFRSVEQIKDRLGANAVPIQLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVA 218 (691)
T ss_pred ---HHHHHHHHHHHhCCCceeEEecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhh
Confidence 223333333332211000
Q ss_pred ------------------------------ccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCC---
Q 010318 260 ------------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR--- 306 (513)
Q Consensus 260 ------------------------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~--- 306 (513)
...-+|++..||+++.|+..|+ ..++..+|.|..
T Consensus 219 e~dd~lle~yl~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LL-------------d~I~~~lPsP~~~~~ 285 (691)
T PRK12739 219 EVDEELMEKYLEGEEITEEEIKAAIRKATINMEFFPVLCGSAFKNKGVQPLL-------------DAVVDYLPSPLDVPA 285 (691)
T ss_pred hcCHHHHHHHhccCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHH-------------HHHHHHCCChhhccc
Confidence 0011344555666666665532 223344555421
Q ss_pred ----------------CCCCCceEEEEEEEc--cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----Ceeec
Q 010318 307 ----------------DPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVR 364 (513)
Q Consensus 307 ----------------~~~~~~~~~i~~~~~--~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~ 364 (513)
+++.|+.+.|.+++. ..|.+.++||.+|+|+.||.|+....+...+|.+|+.. ..+++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~ 365 (691)
T PRK12739 286 IKGINPDTEEEIERPASDDEPFAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIK 365 (691)
T ss_pred cccccCCCCcceeeccCCCCCeEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCccccc
Confidence 346688999998873 57999999999999999999987766677788888654 56899
Q ss_pred ccCCCCeEEEEeccCCcccceeeeEEccCC
Q 010318 365 HAGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (513)
Q Consensus 365 ~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (513)
++.||+++++ .|++ +++.|++|++..
T Consensus 366 ~~~aGdI~~i--~gl~--~~~~gdtl~~~~ 391 (691)
T PRK12739 366 EVYAGDIAAA--VGLK--DTTTGDTLCDEK 391 (691)
T ss_pred ccCCCCEEEE--eCCC--cccCCCEEeCCC
Confidence 9999999996 3554 378999998654
No 51
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=9.7e-32 Score=292.51 Aligned_cols=251 Identities=25% Similarity=0.378 Sum_probs=192.0
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++||+|||||||+++|+..... ..+.+|+|++.+.+.+.+.
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~-------------------------------~~e~~GiTq~i~~~~v~~~ 289 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIA-------------------------------QKEAGGITQKIGAYEVEFE 289 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCc-------------------------------cccCCccccccceEEEEEE
Confidence 457899999999999999999999543321 1223789988887766653
Q ss_pred ----CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCC
Q 010318 159 ----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 ----~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~ 234 (513)
+..++|+|||||+.|..++.+++..+|++||||||.+|.. +||.+++..+...++| +|||+||||++.
T Consensus 290 ~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~-------~QT~E~I~~~k~~~iP-iIVViNKiDl~~ 361 (742)
T CHL00189 290 YKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVK-------PQTIEAINYIQAANVP-IIVAINKIDKAN 361 (742)
T ss_pred ecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCC-------hhhHHHHHHHHhcCce-EEEEEECCCccc
Confidence 5899999999999999999999999999999999999853 7999999999999999 999999999954
Q ss_pred CCchHHHHHHHHhhhHhh---hhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCC
Q 010318 235 VNWSKERYDEIESKMTPF---LKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGP 311 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~---l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~ 311 (513)
.+ ++.+.+++..+ ...++ ..++++++||++|.|+.+|++. +..+. .+......++.|
T Consensus 362 ~~-----~e~v~~eL~~~~ll~e~~g----~~vpvv~VSAktG~GIdeLle~----------I~~l~-e~~~lk~~~~~~ 421 (742)
T CHL00189 362 AN-----TERIKQQLAKYNLIPEKWG----GDTPMIPISASQGTNIDKLLET----------ILLLA-EIEDLKADPTQL 421 (742)
T ss_pred cC-----HHHHHHHHHHhccchHhhC----CCceEEEEECCCCCCHHHHHHh----------hhhhh-hhhcccCCCCCC
Confidence 32 23333333221 11222 2479999999999999987552 22111 122223345678
Q ss_pred ceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC-CeeecccCCCCeEEEEeccCCcccceeee
Q 010318 312 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGF 388 (513)
Q Consensus 312 ~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~-~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 388 (513)
+...|.+++ ++.|++++|+|.+|+|+.||.|+++| ...+|++|... +.++.+|.||++|.+ .|++ .....|+
T Consensus 422 ~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~vv~g~--~~gkVr~m~~~~~~~v~~a~pgdiV~I--~gl~-~~~~~Gd 496 (742)
T CHL00189 422 AQGIILEAHLDKTKGPVATILVQNGTLHIGDIIVIGT--SYAKIRGMINSLGNKINLATPSSVVEI--WGLS-SVPATGE 496 (742)
T ss_pred ceEEEEEEEEcCCCceEEEEEEEcCEEecCCEEEECC--cceEEEEEEcCCCcCccEEcCCCceEe--cCcc-cCCCCCC
Confidence 888888876 68999999999999999999999987 46899999854 789999999999985 4542 2345688
Q ss_pred EEccC
Q 010318 389 VLSSV 393 (513)
Q Consensus 389 vl~~~ 393 (513)
.|.-.
T Consensus 497 ~l~v~ 501 (742)
T CHL00189 497 HFQVF 501 (742)
T ss_pred EEEEe
Confidence 77543
No 52
>PRK04004 translation initiation factor IF-2; Validated
Probab=100.00 E-value=1.4e-31 Score=288.44 Aligned_cols=260 Identities=24% Similarity=0.357 Sum_probs=195.3
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..|++.|+++||+|||||||+++|.+.... ....+|+|++.+...+++.
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~-------------------------------~~~~g~itq~ig~~~~~~~ 51 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVA-------------------------------AKEAGGITQHIGATEVPID 51 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccc-------------------------------cCCCCceEEeeceeecccc
Confidence 457789999999999999999999433211 1122556666655443322
Q ss_pred C------------------eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCC
Q 010318 159 T------------------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV 220 (513)
Q Consensus 159 ~------------------~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~i 220 (513)
. ..++|+|||||++|...+.++++.+|++|||+|+++|. .+|+.+++.++...++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~-------~~qt~e~i~~~~~~~v 124 (586)
T PRK04004 52 VIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGF-------QPQTIEAINILKRRKT 124 (586)
T ss_pred ccccccceeccccccccccCCEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCC-------CHhHHHHHHHHHHcCC
Confidence 0 12799999999999999999999999999999999984 3799999999999999
Q ss_pred CeEEEEEeeccCCCCCch------------------HHHHHHHHhhhHhhhhhccCcc---------cCCeeEEEeeccc
Q 010318 221 TKLLLVVNKMDDHTVNWS------------------KERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLM 273 (513)
Q Consensus 221 p~~ivviNK~D~~~~~~~------------------~~~~~~i~~~l~~~l~~~g~~~---------~~~~~iipiSa~~ 273 (513)
| +++++||||+. ..|. +..|++...++..+|...|+.. ..+++++|+||++
T Consensus 125 p-iIvviNK~D~~-~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~t 202 (586)
T PRK04004 125 P-FVVAANKIDRI-PGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKT 202 (586)
T ss_pred C-EEEEEECcCCc-hhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCC
Confidence 9 99999999984 2343 3456666666777777777653 2468999999999
Q ss_pred ccccccccccCCCCCCCcchHHHHhhh-cc-CCCCCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCc
Q 010318 274 GLNMKTRVDKSLCPWWNGPCLFEALDR-IE-ITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA 349 (513)
Q Consensus 274 g~gi~~l~~~~~~~w~~g~~L~~~l~~-l~-~~~~~~~~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~ 349 (513)
|+|+.+|++. +...++. ++ ....+.+.|++++|.+++ ++.|++++|+|.+|+|++||.|+++|.+.
T Consensus 203 GeGi~dLl~~----------i~~~~~~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~ 272 (586)
T PRK04004 203 GEGIPDLLMV----------LAGLAQRYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDG 272 (586)
T ss_pred CCChHHHHHH----------HHHHHHHHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCC
Confidence 9999987543 2222221 22 123456789999999998 68999999999999999999999999873
Q ss_pred --EEEEEEEEEC------------CeeecccCCCCeEEEEeccCCcccceeeeEE
Q 010318 350 --QVKVLAIYCD------------DNRVRHAGPGENLRIRLSGIEEEDILSGFVL 390 (513)
Q Consensus 350 --~~~V~~i~~~------------~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl 390 (513)
.++|++|..+ ...+++|.|...|.+...|++. +..|+-+
T Consensus 273 ~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~--~~~g~~~ 325 (586)
T PRK04004 273 PIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLED--ALAGSPL 325 (586)
T ss_pred cceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccc--cCCCCeE
Confidence 5799999975 2567778888777764445443 2445443
No 53
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=4.9e-31 Score=280.84 Aligned_cols=280 Identities=19% Similarity=0.228 Sum_probs=211.6
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.+||+|+||+|||||||+++|++..|.+.....- .+++ ......+|..+.|+++|+|+......+++++
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v--------~~~~-~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~ 78 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTV--------KGRK-SGRHATSDWMEMEKQRGISVTSSVMQFPYRD 78 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCcccccee--------eccc-cCccccCCCcHHHHhhCCceeeeeEEEEECC
Confidence 467999999999999999999999988877543210 0000 0112347888999999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
+.++|+|||||.+|...+.++++.+|++|+|||+..|+ +.|+++++.+++..++| +++++||||+...+..
T Consensus 79 ~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-------~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~~- 149 (526)
T PRK00741 79 CLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGV-------EPQTRKLMEVCRLRDTP-IFTFINKLDRDGREPL- 149 (526)
T ss_pred EEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCC-------CHHHHHHHHHHHhcCCC-EEEEEECCcccccCHH-
Confidence 99999999999999999999999999999999999984 36899999999999999 8999999999655421
Q ss_pred HHHHHHHhhhHhh-----------------------------------------------------hhh---------c-
Q 010318 240 ERYDEIESKMTPF-----------------------------------------------------LKA---------S- 256 (513)
Q Consensus 240 ~~~~~i~~~l~~~-----------------------------------------------------l~~---------~- 256 (513)
..++++.+.+..- |.. +
T Consensus 150 ~~l~~i~~~l~~~~~p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~le 229 (526)
T PRK00741 150 ELLDEIEEVLGIACAPITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELE 229 (526)
T ss_pred HHHHHHHHHhCCCCeeEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHH
Confidence 2222332221100 000 0
Q ss_pred ------------cCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCC---------CCCCceEE
Q 010318 257 ------------GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD---------PNGPFRMP 315 (513)
Q Consensus 257 ------------g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~---------~~~~~~~~ 315 (513)
.+....-+|++..||+++.|+..|+ ..++..+|.|... .+.+|...
T Consensus 230 l~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LL-------------d~i~~~~P~P~~~~~~~~~~~~~~~~~~~~ 296 (526)
T PRK00741 230 LVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFL-------------DAFVEWAPAPQPRQTDEREVEPTEEKFSGF 296 (526)
T ss_pred hhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHH-------------HHHHHHCCCCCcccccceeecCCCCceEEE
Confidence 0000112678888999999998853 3344556665321 23567788
Q ss_pred EEEEE-----ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----CeeecccCCCCeEEEEeccCCccccee
Q 010318 316 IIDKF-----KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILS 386 (513)
Q Consensus 316 i~~~~-----~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~ 386 (513)
|..+. +.+|.+.+.||.||+|+.|+.|+....++..++..++.. +.++++|.|||++++ .++ .+++.
T Consensus 297 VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v--~~l--~~~~~ 372 (526)
T PRK00741 297 VFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGL--HNH--GTIQI 372 (526)
T ss_pred EEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEE--ECC--CCCcc
Confidence 88775 357999999999999999999999888888888887654 578999999999995 443 45889
Q ss_pred eeEEccCC
Q 010318 387 GFVLSSVA 394 (513)
Q Consensus 387 G~vl~~~~ 394 (513)
||+|+...
T Consensus 373 GDTL~~~~ 380 (526)
T PRK00741 373 GDTFTQGE 380 (526)
T ss_pred CCCccCCC
Confidence 99998755
No 54
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-32 Score=284.45 Aligned_cols=246 Identities=22% Similarity=0.358 Sum_probs=191.5
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.+.|||+||||+|||-|++.|.+.+. ++....|+|++++..+|+..
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNV-------------------------------qegeaggitqqIgAt~fp~~ 520 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNV-------------------------------QEGEAGGITQQIGATYFPAE 520 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhcccc-------------------------------ccccccceeeeccccccchH
Confidence 56889999999999999999999854432 24456899999999888654
Q ss_pred C------------------eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCC
Q 010318 159 T------------------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV 220 (513)
Q Consensus 159 ~------------------~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~i 220 (513)
+ ..+.+||||||+.|.+...+|.+.||+||||||.++| +++||.|.+.+++..+.
T Consensus 521 ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhG-------lepqtiESi~lLR~rkt 593 (1064)
T KOG1144|consen 521 NIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHG-------LEPQTIESINLLRMRKT 593 (1064)
T ss_pred HHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhcc-------CCcchhHHHHHHHhcCC
Confidence 2 3489999999999999999999999999999999999 56999999999999999
Q ss_pred CeEEEEEeeccCCCCCchH------------------HHHHHHHhhhHhhhhhccCcc---------cCCeeEEEeeccc
Q 010318 221 TKLLLVVNKMDDHTVNWSK------------------ERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLM 273 (513)
Q Consensus 221 p~~ivviNK~D~~~~~~~~------------------~~~~~i~~~l~~~l~~~g~~~---------~~~~~iipiSa~~ 273 (513)
| |||++||+|+. ++|.. ..|+.-.+.+...|...|++. ...+.+||+||.+
T Consensus 594 p-FivALNKiDRL-Ygwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~s 671 (1064)
T KOG1144|consen 594 P-FIVALNKIDRL-YGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAIS 671 (1064)
T ss_pred C-eEEeehhhhhh-cccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeeccccc
Confidence 9 99999999985 56731 233333444444455556541 3457899999999
Q ss_pred ccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC---
Q 010318 274 GLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--- 348 (513)
Q Consensus 274 g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~--- 348 (513)
|+||.+|+-. |.++-+............+++.|.++. .|.|+.+...+.+|.|+.||.|++++.+
T Consensus 672 GeGipdLl~l----------lv~ltQk~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpI 741 (1064)
T KOG1144|consen 672 GEGIPDLLLL----------LVQLTQKTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPI 741 (1064)
T ss_pred CCCcHHHHHH----------HHHHHHHHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCch
Confidence 9999986431 333333323333345677889999875 7999999999999999999999998765
Q ss_pred -------------cEEEEEEEEECCeeec-------------ccCCCCeEEE
Q 010318 349 -------------AQVKVLAIYCDDNRVR-------------HAGPGENLRI 374 (513)
Q Consensus 349 -------------~~~~V~~i~~~~~~v~-------------~a~aG~~v~i 374 (513)
+..+|++-++||+.|. .|.||..+-+
T Consensus 742 vTtIRaLLtP~PlkElRVk~~Y~hhkEvkaA~GiKI~A~~LEkaiaG~~l~V 793 (1064)
T KOG1144|consen 742 VTTIRALLTPQPLKELRVKGTYVHHKEVKAAQGIKIAAKDLEKAIAGTRLLV 793 (1064)
T ss_pred hHHHHHhcCCcchHhhccccceeehhHhhhhccchhhhcchHHHhcCCeeEE
Confidence 3568888888876554 4566666655
No 55
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.98 E-value=1.2e-31 Score=251.15 Aligned_cols=176 Identities=36% Similarity=0.596 Sum_probs=152.2
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEE--e
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE--T 157 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~--~ 157 (513)
++.++|+++||+|||||||+++|++..+.+......+. ....++..+.|+++|+|++.....+. +
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~-------------~~~~~~~~~~e~~~~~ti~~~~~~~~~~~ 67 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEET-------------KNAFLDKHPEERERGITIDLSFISFEKNE 67 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHH-------------HHCHHHSSHHHHHCTSSSSSEEEEEEBTE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhcccccccccccc-------------ccccccccchhhhcccccccccccccccc
Confidence 46899999999999999999999999998877654330 13357888999999999999999999 9
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
.++.++|||||||.+|.+++.++++.+|++|+||||.+|. ..|+++++.++..+++| +|||+||||+.
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~-------~~~~~~~l~~~~~~~~p-~ivvlNK~D~~---- 135 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGI-------QPQTEEHLKILRELGIP-IIVVLNKMDLI---- 135 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBS-------THHHHHHHHHHHHTT-S-EEEEEETCTSS----
T ss_pred cccceeecccccccceeecccceecccccceeeeeccccc-------ccccccccccccccccc-eEEeeeeccch----
Confidence 9999999999999999999999999999999999999994 47999999999999999 99999999993
Q ss_pred hHHHHHHHHhhhH-hhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 238 SKERYDEIESKMT-PFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 238 ~~~~~~~i~~~l~-~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+.++.++.+++. .+++..++.....+|++|+||++|+|+..|+
T Consensus 136 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll 179 (188)
T PF00009_consen 136 -EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELL 179 (188)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHH
T ss_pred -hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHH
Confidence 567778888887 5667776652135899999999999999853
No 56
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.98 E-value=4e-31 Score=283.67 Aligned_cols=259 Identities=21% Similarity=0.380 Sum_probs=187.6
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+++.|+++||+|||||||+++|++.... ....+|+|.+++...+.++.
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~-------------------------------~~e~ggiTq~iG~~~v~~~~ 50 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVA-------------------------------KREAGGITQHIGATEIPMDV 50 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccc-------------------------------cccCCceecccCeeEeeecc
Confidence 36789999999999999999999543211 11225677766666554421
Q ss_pred ------------------eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCC
Q 010318 160 ------------------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 221 (513)
Q Consensus 160 ------------------~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip 221 (513)
..++|+|||||+.|...+.++++.+|++|||+|+++|. .+|+.+++.+++..++|
T Consensus 51 ~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~-------~~qt~e~i~~l~~~~vp 123 (590)
T TIGR00491 51 IEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGF-------KPQTQEALNILRMYKTP 123 (590)
T ss_pred ccccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCC-------CHhHHHHHHHHHHcCCC
Confidence 23899999999999999999999999999999999984 37999999999999999
Q ss_pred eEEEEEeeccCCCCCchH------------------HHHHHHHhhhHhhhhhccCcc---------cCCeeEEEeecccc
Q 010318 222 KLLLVVNKMDDHTVNWSK------------------ERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLMG 274 (513)
Q Consensus 222 ~~ivviNK~D~~~~~~~~------------------~~~~~i~~~l~~~l~~~g~~~---------~~~~~iipiSa~~g 274 (513)
+|+++||+|+.. .|.. ..+++....+...|.+.|+.. ...++++|+||++|
T Consensus 124 -iIVv~NK~Dl~~-~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tG 201 (590)
T TIGR00491 124 -FVVAANKIDRIP-GWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITG 201 (590)
T ss_pred -EEEEEECCCccc-hhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCC
Confidence 999999999942 3421 011112222223345555532 24689999999999
Q ss_pred cccccccccCCCCCCCcchHHHHhhh-cc-CCCCCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCc-
Q 010318 275 LNMKTRVDKSLCPWWNGPCLFEALDR-IE-ITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA- 349 (513)
Q Consensus 275 ~gi~~l~~~~~~~w~~g~~L~~~l~~-l~-~~~~~~~~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~- 349 (513)
+|+++|... |..+.+. ++ ......+.|++++|.+++ +|.|++++|+|.+|+|++||.|+++|.+.
T Consensus 202 eGideLl~~----------l~~l~~~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~ 271 (590)
T TIGR00491 202 EGIPELLTM----------LAGLAQQYLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDV 271 (590)
T ss_pred CChhHHHHH----------HHHHHHHHhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCc
Confidence 999997542 2222221 21 123356789999999998 68999999999999999999999999874
Q ss_pred -EEEEEEEEECC------------eeecccCCCCeEEEEeccCCcccceeeeEE
Q 010318 350 -QVKVLAIYCDD------------NRVRHAGPGENLRIRLSGIEEEDILSGFVL 390 (513)
Q Consensus 350 -~~~V~~i~~~~------------~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl 390 (513)
.++||+|...+ ..+.++.|..-+-+...|++. ...|+.+
T Consensus 272 i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v~~~~l~~--~~aG~~~ 323 (590)
T TIGR00491 272 IVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKIAAPGLDD--VMAGSPI 323 (590)
T ss_pred ccEEEEEecCCCccccccccccccCCcceecCCCceeEEecCCCC--CCCCCEE
Confidence 78999998753 355666666656655555543 3455554
No 57
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.98 E-value=1.8e-30 Score=287.43 Aligned_cols=273 Identities=22% Similarity=0.252 Sum_probs=205.6
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.+||+|+||+|+|||||+++|++.+|.+... |+. ..+++.+|+.+.|+++|+|++.....++|+
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~------------~~~-~~g~~~~D~~~~e~~rgiti~~~~~~~~~~ 73 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKI------------GEV-HDGAATMDWMEQEKERGITITSAATTVFWK 73 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCcccc------------ccc-cCCccccCCCHHHHhcCCCEecceEEEEEC
Confidence 3467899999999999999999999988876421 110 124588999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
+++++|+|||||.+|...+.++++.+|++|||||+..|. ..|+.+++.++...++| +++++||||+..+++
T Consensus 74 ~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~-------~~~~~~~~~~~~~~~~p-~ivviNK~D~~~~~~- 144 (689)
T TIGR00484 74 GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGV-------QPQSETVWRQANRYEVP-RIAFVNKMDKTGANF- 144 (689)
T ss_pred CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCC-------ChhHHHHHHHHHHcCCC-EEEEEECCCCCCCCH-
Confidence 999999999999999999999999999999999999985 36899999999999999 788999999965442
Q ss_pred HHHHHHHHhhhHhhhhhccCc-----------------------------------------------------------
Q 010318 239 KERYDEIESKMTPFLKASGYN----------------------------------------------------------- 259 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~----------------------------------------------------------- 259 (513)
..+.+++...+....+.
T Consensus 145 ----~~~~~~i~~~l~~~~~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e 220 (689)
T TIGR00484 145 ----LRVVNQIKQRLGANAVPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAE 220 (689)
T ss_pred ----HHHHHHHHHHhCCCceeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHh
Confidence 22233332222211000
Q ss_pred -----------------------------ccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCC----
Q 010318 260 -----------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---- 306 (513)
Q Consensus 260 -----------------------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~---- 306 (513)
...-+|++..||+++.|+..|++ .++..+|.|..
T Consensus 221 ~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd-------------~I~~~lPsP~~~~~~ 287 (689)
T TIGR00484 221 FDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCGSAFKNKGVQLLLD-------------AVVDYLPSPTDVPAI 287 (689)
T ss_pred cCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEeccccCCccHHHHHH-------------HHHHHCCCchhcccc
Confidence 01123444445666666555322 23344555431
Q ss_pred ---------------CCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----Ceeecc
Q 010318 307 ---------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRH 365 (513)
Q Consensus 307 ---------------~~~~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~ 365 (513)
+++.|+.+.|.++. +..|.+..+||.||+|+.||+|+....+...+|..|... ..++++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~ 367 (689)
T TIGR00484 288 KGIDPDTEKEIERKASDDEPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKE 367 (689)
T ss_pred cccCCCCCceeeecCCCCCceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccc
Confidence 23567888898887 467999999999999999999997666666777777654 468999
Q ss_pred cCCCCeEEEEeccCCcccceeeeEEccCC
Q 010318 366 AGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (513)
Q Consensus 366 a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (513)
+.||+++++ .|++ +++.|++|++..
T Consensus 368 ~~aGdI~~i--~gl~--~~~~gdtl~~~~ 392 (689)
T TIGR00484 368 VRAGDICAA--IGLK--DTTTGDTLCDPK 392 (689)
T ss_pred cCCCCEEEE--cCCC--CCCCCCEEeCCC
Confidence 999999996 5554 468999998654
No 58
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.97 E-value=3.3e-30 Score=274.53 Aligned_cols=277 Identities=19% Similarity=0.197 Sum_probs=208.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+|+||+|||||||+++|++..|.+..... ..++++ .....+|..+.|+++|+|+......+++.
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~--------v~~~g~-~~~t~~D~~~~E~~rgisi~~~~~~~~~~ 78 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGA--------VKGRGS-QRHAKSDWMEMEKQRGISITTSVMQFPYR 78 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccce--------eccccc-cccccCCCCHHHHhcCCcEEEEEEEEeeC
Confidence 356799999999999999999999998888754321 001111 11245889999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
++.++|+|||||.+|...+.++++.+|++|+|||+..|+ ..++..++..++..++| +|+++||+|+...+.
T Consensus 79 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-------~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~~- 149 (527)
T TIGR00503 79 DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-------ETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRDP- 149 (527)
T ss_pred CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-------CHHHHHHHHHHHhcCCC-EEEEEECccccCCCH-
Confidence 999999999999999999999999999999999999984 36899999999989999 899999999854432
Q ss_pred HHHHHHHHhhhHhhhhhccC------------------------------------------------------------
Q 010318 239 KERYDEIESKMTPFLKASGY------------------------------------------------------------ 258 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~------------------------------------------------------------ 258 (513)
.++.+++...+...-+
T Consensus 150 ----~~ll~~i~~~l~~~~~~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 225 (527)
T TIGR00503 150 ----LELLDEVENELKINCAPITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQL 225 (527)
T ss_pred ----HHHHHHHHHHhCCCCccEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHH
Confidence 1222222222211000
Q ss_pred -------------------cccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCC---------CCC
Q 010318 259 -------------------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD---------PNG 310 (513)
Q Consensus 259 -------------------~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~---------~~~ 310 (513)
....-+|++..||+++.|+..| |..++..+|.|... .+.
T Consensus 226 ~~~le~~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~L-------------Ld~i~~~~PsP~~~~~~~~~~~~~~~ 292 (527)
T TIGR00503 226 RDELELVEGASNEFDLAAFHGGEMTPVFFGTALGNFGVDHF-------------LDGLLQWAPKPEARQSDTRTVEPTEE 292 (527)
T ss_pred HHHHHHHhhhccccCHHHHhcCCeeEEEEeecccCccHHHH-------------HHHHHHHCCCCccccCCceecCCCCC
Confidence 0011235666677777777664 22344556665421 245
Q ss_pred CceEEEEEEEc-----cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----CeeecccCCCCeEEEEeccCCc
Q 010318 311 PFRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEE 381 (513)
Q Consensus 311 ~~~~~i~~~~~-----~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~ 381 (513)
+|...|..+.. .+|.+.+.||.||+|+.|++|+....++..++..++.. +.++++|.|||++++ .++
T Consensus 293 ~~~~~VFK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~--~~~-- 368 (527)
T TIGR00503 293 KFSGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGL--HNH-- 368 (527)
T ss_pred CeeEEEEEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEE--ECC--
Confidence 67777777753 47999999999999999999998888888898888654 578999999999985 443
Q ss_pred ccceeeeEEccCC
Q 010318 382 EDILSGFVLSSVA 394 (513)
Q Consensus 382 ~~i~~G~vl~~~~ 394 (513)
.+++.||+|++..
T Consensus 369 ~~~~~GDtl~~~~ 381 (527)
T TIGR00503 369 GTIQIGDTFTQGE 381 (527)
T ss_pred CCcccCCEecCCC
Confidence 4588999998754
No 59
>PRK13351 elongation factor G; Reviewed
Probab=99.97 E-value=1e-29 Score=282.05 Aligned_cols=272 Identities=22% Similarity=0.313 Sum_probs=211.3
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.+||+|+||+|+|||||+++|++.+|.+..... .. ...+.+|+.+.|+++|+|+......+.|.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~-------v~------~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~ 72 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGE-------VE------DGTTVTDWMPQEQERGITIESAATSCDWDN 72 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCcccccc-------cc------CCcccCCCCHHHHhcCCCcccceEEEEECC
Confidence 46799999999999999999999988886553210 00 124678999999999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
+.++|+|||||.+|...+..+++.+|++|+|+|+..+. ..++.+++..+...++| +++++||+|+..++.
T Consensus 73 ~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~-------~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~-- 142 (687)
T PRK13351 73 HRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGV-------QPQTETVWRQADRYGIP-RLIFINKMDRVGADL-- 142 (687)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCC-------CHHHHHHHHHHHhcCCC-EEEEEECCCCCCCCH--
Confidence 99999999999999999999999999999999999984 36889999999999999 789999999965542
Q ss_pred HHHHHHHhhhHhhhhhc---------------------------------------------------------------
Q 010318 240 ERYDEIESKMTPFLKAS--------------------------------------------------------------- 256 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~--------------------------------------------------------------- 256 (513)
..+.++++..|...
T Consensus 143 ---~~~~~~i~~~l~~~~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~ 219 (687)
T PRK13351 143 ---FKVLEDIEERFGKRPLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAE 219 (687)
T ss_pred ---HHHHHHHHHHHCCCeEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHh
Confidence 22222222221110
Q ss_pred -----------c--Cc-------------ccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCC----
Q 010318 257 -----------G--YN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---- 306 (513)
Q Consensus 257 -----------g--~~-------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~---- 306 (513)
+ +. ...-+|++..||++|.|+..|++ .++..+|.|..
T Consensus 220 ~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd-------------~I~~~lPsP~~~~~~ 286 (687)
T PRK13351 220 FDDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFGSALKNIGIEPLLD-------------AVVDYLPSPLEVPPP 286 (687)
T ss_pred cCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCcCccHHHHHH-------------HHHHHCCChhhcccc
Confidence 0 00 01235677779999999987533 33444555431
Q ss_pred --------------CCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----Ceeeccc
Q 010318 307 --------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHA 366 (513)
Q Consensus 307 --------------~~~~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a 366 (513)
+++.|+.+.|.+++ ++.|.++++||.+|+|+.||+|++.+.+...+|..|+.. ..++++|
T Consensus 287 ~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~ 366 (687)
T PRK13351 287 RGSKDNGKPVKVDPDPEKPLLALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRA 366 (687)
T ss_pred cccCCCCCceeecCCCCCCeEEEEEEeeecCCCceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCcc
Confidence 34678999999987 467999999999999999999999888877788887654 5789999
Q ss_pred CCCCeEEEEeccCCcccceeeeEEccCC
Q 010318 367 GPGENLRIRLSGIEEEDILSGFVLSSVA 394 (513)
Q Consensus 367 ~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (513)
.||+++++ .|++ ++..|++|++..
T Consensus 367 ~aGdI~~i--~gl~--~~~~gdtl~~~~ 390 (687)
T PRK13351 367 KAGDIVAV--AGLK--ELETGDTLHDSA 390 (687)
T ss_pred CCCCEEEE--ECcc--cCccCCEEeCCC
Confidence 99999984 6554 367899998654
No 60
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.97 E-value=1.1e-29 Score=281.48 Aligned_cols=289 Identities=21% Similarity=0.324 Sum_probs=209.6
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEE---
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH--- 154 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~--- 154 (513)
.....+||+++||+|+|||||+++|++.+|.+.... .| -.+.+|+.++|+++|+|++.....
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~----------~~-----~~~~~d~~~~e~~rg~Ti~~~~~~~~~ 79 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEEL----------AG-----QQLYLDFDEQEQERGITINAANVSMVH 79 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhc----------CC-----ceeecCCCHHHHhhcchhhcccceeEE
Confidence 345679999999999999999999999999876521 12 135689999999999999887654
Q ss_pred -EEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCC
Q 010318 155 -FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 233 (513)
Q Consensus 155 -~~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 233 (513)
+++.++.++|+|||||.+|...+.++++.+|++|+|+|+..|+ ..++.+++..+...++| +|+++||||+.
T Consensus 80 ~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~-------~~~t~~~~~~~~~~~~p-~ivviNKiD~~ 151 (720)
T TIGR00490 80 EYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGV-------MPQTETVLRQALKENVK-PVLFINKVDRL 151 (720)
T ss_pred eecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCC-------CccHHHHHHHHHHcCCC-EEEEEEChhcc
Confidence 6778899999999999999999999999999999999999985 36999999999899999 67999999996
Q ss_pred CCC------chHHHHHHHHhhhHhhhhhc-c--------CcccCCeeEEEeecccccccc------------ccc---c-
Q 010318 234 TVN------WSKERYDEIESKMTPFLKAS-G--------YNVKKDVQFLPISGLMGLNMK------------TRV---D- 282 (513)
Q Consensus 234 ~~~------~~~~~~~~i~~~l~~~l~~~-g--------~~~~~~~~iipiSa~~g~gi~------------~l~---~- 282 (513)
..+ +.+++|..+...+...+... + +.+. +......|++.+++.. ++. .
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 230 (720)
T TIGR00490 152 INELKLTPQELQERFIKIITEVNKLIKAMAPEEFRDKWKVRVE-DGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKE 230 (720)
T ss_pred cchhcCCHHHHHHHHhhhhHHHHhhhhccCCHHHhhceEechh-hCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHh
Confidence 443 23455656555555555432 0 0000 0112233444442210 000 0
Q ss_pred c---CCCCCCC-cchHHHHh-hhccCCCC-------------------------CCCCCceEEEEEEE--ccCCeEEEEE
Q 010318 283 K---SLCPWWN-GPCLFEAL-DRIEITPR-------------------------DPNGPFRMPIIDKF--KDMGTVVMGK 330 (513)
Q Consensus 283 ~---~~~~w~~-g~~L~~~l-~~l~~~~~-------------------------~~~~~~~~~i~~~~--~~~G~vv~g~ 330 (513)
. .+..|+. -..|++.+ ..+|.|.. +.+.|+.+.|.+++ ++.|++++||
T Consensus 231 ~~~~~~~~~~Pv~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~R 310 (720)
T TIGR00490 231 DKQKELAKKSPLHQVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGR 310 (720)
T ss_pred ccHHHHhhhhhHHHHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEE
Confidence 0 0001211 01233332 33555521 23467888998886 5789999999
Q ss_pred EEeeeecCCCEEEEecCCcEEEEEEEEEC----CeeecccCCCCeEEEEeccCCcccceeeeEEccCC
Q 010318 331 VESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (513)
Q Consensus 331 v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (513)
|.+|+|++||.|++.+.+...+|+.|+.. ..++++|.||++|++ .|++ ++.+||+|++++
T Consensus 311 V~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~--~~~~GdtL~~~~ 374 (720)
T TIGR00490 311 LYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAV--IGLK--DAVAGETICTTV 374 (720)
T ss_pred EEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEE--ECcc--ccccCceeecCC
Confidence 99999999999999999989999999865 468999999999996 4553 577999998765
No 61
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.3e-29 Score=250.97 Aligned_cols=280 Identities=21% Similarity=0.249 Sum_probs=203.9
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++.||+-|||+|||||...||...|.|.....-+ ||.+. -....|..+-|++|||++..+.-.|++.+
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk--------~rk~~-~~a~SDWM~iEkqRGISVtsSVMqF~Y~~ 80 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVK--------GRKSG-KHAKSDWMEIEKQRGISVTSSVMQFDYAD 80 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceee--------eccCC-cccccHHHHHHHhcCceEEeeEEEeccCC
Confidence 3558899999999999999999999888876543221 11111 11234566789999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
+.++|+|||||++|...+.+.+..+|.||.||||..|+ ++||+..+..++..++| ++-+|||||+..-+ +-
T Consensus 81 ~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGi-------E~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rd-P~ 151 (528)
T COG4108 81 CLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGI-------EPQTLKLFEVCRLRDIP-IFTFINKLDREGRD-PL 151 (528)
T ss_pred eEEeccCCCCccccchhHHHHHHhhheeeEEEecccCc-------cHHHHHHHHHHhhcCCc-eEEEeeccccccCC-hH
Confidence 99999999999999999999999999999999999994 58999999999999999 99999999995443 33
Q ss_pred HHHHHHHhhhHhhhhhccCcc-----------------------------------------------------------
Q 010318 240 ERYDEIESKMTPFLKASGYNV----------------------------------------------------------- 260 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~~----------------------------------------------------------- 260 (513)
+-++++.++|.-....+.|+.
T Consensus 152 ELLdEiE~~L~i~~~PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~E 231 (528)
T COG4108 152 ELLDEIEEELGIQCAPITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELE 231 (528)
T ss_pred HHHHHHHHHhCcceecccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHH
Confidence 444455444432222222210
Q ss_pred ----------------cCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCC---------CCCCCceEE
Q 010318 261 ----------------KKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---------DPNGPFRMP 315 (513)
Q Consensus 261 ----------------~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~---------~~~~~~~~~ 315 (513)
..-.|++.-||++.-|+..+ |..+++.-|+|.. ..+..|...
T Consensus 232 L~~~a~~~Fd~~~fl~G~~TPVFFGSAl~NFGV~~~-------------L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGF 298 (528)
T COG4108 232 LVQGAGNEFDLEAFLAGELTPVFFGSALGNFGVDHF-------------LDALVDWAPSPRARQADTREVEPTEDKFSGF 298 (528)
T ss_pred HHHhhccccCHHHHhcCCccceEehhhhhccCHHHH-------------HHHHHhhCCCCCcccCCcCcccCCCCccceE
Confidence 01113334444444444432 1223333344421 123335455
Q ss_pred EEEEE-----ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----CeeecccCCCCeEEEEeccCCccccee
Q 010318 316 IIDKF-----KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILS 386 (513)
Q Consensus 316 i~~~~-----~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~ 386 (513)
|..+. +.+.+++..||.||.+..|+++.....++.+++..-+.+ ++.+++|.|||+++|.-.| .++.
T Consensus 299 VFKIQANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG----~~~I 374 (528)
T COG4108 299 VFKIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHG----TIQI 374 (528)
T ss_pred EEEEEcCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCC----ceee
Confidence 55443 367899999999999999999999999998888877654 7789999999999975444 4889
Q ss_pred eeEEccCC
Q 010318 387 GFVLSSVA 394 (513)
Q Consensus 387 G~vl~~~~ 394 (513)
||+++...
T Consensus 375 GDT~t~Ge 382 (528)
T COG4108 375 GDTFTEGE 382 (528)
T ss_pred cceeecCc
Confidence 99998764
No 62
>PRK12740 elongation factor G; Reviewed
Probab=99.97 E-value=1.1e-28 Score=273.21 Aligned_cols=264 Identities=23% Similarity=0.320 Sum_probs=205.2
Q ss_pred EecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEEEEeC
Q 010318 88 IGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDA 167 (513)
Q Consensus 88 vG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDt 167 (513)
+||+|||||||+++|++.+|.+.... +.. ...+++|..+.|+++|+|+......+.+.++.++||||
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~------------~~~-~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDt 67 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIG------------EVE-DGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDT 67 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCc------------ccc-CCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEEC
Confidence 69999999999999999999875421 000 12378999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHh
Q 010318 168 PGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIES 247 (513)
Q Consensus 168 PGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~ 247 (513)
|||.+|...+.++++.+|++|+|+|+..+.. .++..++..+...++| +++++||+|+...++ .++.+
T Consensus 68 PG~~~~~~~~~~~l~~aD~vllvvd~~~~~~-------~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~~~-----~~~~~ 134 (668)
T PRK12740 68 PGHVDFTGEVERALRVLDGAVVVVCAVGGVE-------PQTETVWRQAEKYGVP-RIIFVNKMDRAGADF-----FRVLA 134 (668)
T ss_pred CCcHHHHHHHHHHHHHhCeEEEEEeCCCCcC-------HHHHHHHHHHHHcCCC-EEEEEECCCCCCCCH-----HHHHH
Confidence 9999999999999999999999999998843 5888889999999999 889999999854432 12222
Q ss_pred hhHhhhhh------------------------------------------------------------------------
Q 010318 248 KMTPFLKA------------------------------------------------------------------------ 255 (513)
Q Consensus 248 ~l~~~l~~------------------------------------------------------------------------ 255 (513)
++...+..
T Consensus 135 ~l~~~l~~~~~~~~~p~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~ 214 (668)
T PRK12740 135 QLQEKLGAPVVPLQLPIGEGDDFTGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLE 214 (668)
T ss_pred HHHHHHCCCceeEEecccCCCCceEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHC
Confidence 22221110
Q ss_pred -ccC-------------cccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCC----------------
Q 010318 256 -SGY-------------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITP---------------- 305 (513)
Q Consensus 256 -~g~-------------~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~---------------- 305 (513)
..+ ....-+|++..||++|.|+..|++ .++..+|.|.
T Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd-------------~i~~~lPsp~~~~~~~~~~~~~~~~~ 281 (668)
T PRK12740 215 GEELSEEEIKAGLRKATLAGEIVPVFCGSALKNKGVQRLLD-------------AVVDYLPSPLEVPPVDGEDGEEGAEL 281 (668)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEeccccCCccHHHHHH-------------HHHHHCCChhhcccccCCCCcccccc
Confidence 000 001235788889999999998633 3344455542
Q ss_pred -CCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----CeeecccCCCCeEEEEecc
Q 010318 306 -RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSG 378 (513)
Q Consensus 306 -~~~~~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~ 378 (513)
.+++.|+.+.|.+++ +..|.++.+||.+|+|+.||+|++.+.+...+|..|... ..++++|.||+++++. |
T Consensus 282 ~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~--g 359 (668)
T PRK12740 282 APDPDGPLVALVFKTMDDPFVGKLSLVRVYSGTLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVA--K 359 (668)
T ss_pred ccCCCCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEe--c
Confidence 244678899999987 457999999999999999999999988777777777643 5789999999999974 5
Q ss_pred CCcccceeeeEEccCC
Q 010318 379 IEEEDILSGFVLSSVA 394 (513)
Q Consensus 379 ~~~~~i~~G~vl~~~~ 394 (513)
++ .+++|++|++..
T Consensus 360 l~--~~~~Gdtl~~~~ 373 (668)
T PRK12740 360 LK--DAATGDTLCDKG 373 (668)
T ss_pred cC--ccCCCCEEeCCC
Confidence 54 488999998654
No 63
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.7e-30 Score=245.67 Aligned_cols=349 Identities=22% Similarity=0.354 Sum_probs=263.1
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
..+..+||+.+||+-|||||++.++ +|. .+-..+.|-+|++|+..++.....
T Consensus 34 sRQATiNIGTIGHVAHGKSTvVkAi---SGv-------------------------~TvrFK~ELERNITIKLGYANAKI 85 (466)
T KOG0466|consen 34 SRQATINIGTIGHVAHGKSTVVKAI---SGV-------------------------HTVRFKNELERNITIKLGYANAKI 85 (466)
T ss_pred hheeeeeecceeccccCcceeeeee---ccc-------------------------eEEEehhhhhcceeEEeccccceE
Confidence 3457899999999999999999887 221 111234566788888887654211
Q ss_pred ---C----------------------------------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccc
Q 010318 158 ---E----------------------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFET 200 (513)
Q Consensus 158 ---~----------------------------------~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~ 200 (513)
+ -+.+.|+|+|||.-.+.+|+.|+...|+++|+|.+++..
T Consensus 86 Ykc~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsC--- 162 (466)
T KOG0466|consen 86 YKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESC--- 162 (466)
T ss_pred EecCCCCCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCC---
Confidence 0 144899999999999999999999999999999999875
Q ss_pred cccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 201 GFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 201 ~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
.++||.||+.....+.+++++++-||+|+... +...+-.+++..|++.... .+.|++|+||.-+.|++-
T Consensus 163 ---PQPQTsEHLaaveiM~LkhiiilQNKiDli~e----~~A~eq~e~I~kFi~~t~a---e~aPiiPisAQlkyNId~- 231 (466)
T KOG0466|consen 163 ---PQPQTSEHLAAVEIMKLKHIIILQNKIDLIKE----SQALEQHEQIQKFIQGTVA---EGAPIIPISAQLKYNIDV- 231 (466)
T ss_pred ---CCCchhhHHHHHHHhhhceEEEEechhhhhhH----HHHHHHHHHHHHHHhcccc---CCCceeeehhhhccChHH-
Confidence 47999999999999999999999999999433 3333444455555554432 367999999999999986
Q ss_pred cccCCCCCCCcchHHH-HhhhccCCCCCCCCCceEEEEEEEc----c------CCeEEEEEEEeeeecCCCEEEEecCC-
Q 010318 281 VDKSLCPWWNGPCLFE-ALDRIEITPRDPNGPFRMPIIDKFK----D------MGTVVMGKVESGSVREGDSLLVMPNK- 348 (513)
Q Consensus 281 ~~~~~~~w~~g~~L~~-~l~~l~~~~~~~~~~~~~~i~~~~~----~------~G~vv~g~v~sG~l~~gd~v~~~p~~- 348 (513)
+.+ ....+|.|.++...|.++.|.+.|. | .|-|+.|.+..|.|++||+|.+.|+-
T Consensus 232 -------------v~eyivkkIPvPvRdf~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv 298 (466)
T KOG0466|consen 232 -------------VCEYIVKKIPVPVRDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIV 298 (466)
T ss_pred -------------HHHHHHhcCCCCccccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCcee
Confidence 444 4567999999999999999999882 2 58899999999999999999999963
Q ss_pred -----cE-------EEEEEEEECCeeecccCCCCeEEEEec---cCCcccceeeeEEccCCCCcceeeEEEEEEEEeccc
Q 010318 349 -----AQ-------VKVLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL 413 (513)
Q Consensus 349 -----~~-------~~V~~i~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~l 413 (513)
.. .+|.+++..+.+++.|.||..+++..+ .+...|--.|.||...+..|....+++...++|..+
T Consensus 299 ~kd~~g~~~C~Pi~SrI~sL~AE~n~L~~AvPGGLIGVGT~~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~Llrrl 378 (466)
T KOG0466|consen 299 TKDENGNIKCRPIFSRIVSLFAEQNDLQFAVPGGLIGVGTKMDPTLCRADRLVGQVLGAVGTLPDIFTELEISYFLLRRL 378 (466)
T ss_pred eecCCCcEEEeeHHHHHHHHHhhhccceeecCCceeeeccccCcchhhhhHHHHHHHhhccCCccceeEEEeehhhhhHH
Confidence 11 245555566889999999999998654 233344457889998888899999999988886432
Q ss_pred cc------------ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEEeeecc
Q 010318 414 DN------------AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFA 481 (513)
Q Consensus 414 ~~------------~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~~ 481 (513)
-- ..+..|-..++++++....++|..+.. + .++|.|..|+|.+..+
T Consensus 379 lgvrt~~~~k~~kv~kL~k~E~lmvNIGS~sTG~~v~~vk~--------------------d--~~k~~Lt~P~CteigE 436 (466)
T KOG0466|consen 379 LGVRTKGDKKQAKVSKLVKNEILMVNIGSTSTGGRVSAVKA--------------------D--MAKIQLTSPVCTEIGE 436 (466)
T ss_pred hccccccccccchhhhcccCcEEEEEecccccCceEEEEec--------------------c--eeeeEecCchhcccch
Confidence 10 235566777888888888888775532 1 4678889999988753
Q ss_pred cccccceEEEEeCCeEEEEEEEEe
Q 010318 482 DFAQLGRFTLRTEGKTVAVGKVTE 505 (513)
Q Consensus 482 ~~~~lgrfilr~~g~tva~G~V~~ 505 (513)
.-+++|.+=+ .=|.+|+|.|..
T Consensus 437 -kiAlSRrvek-hWRLIGwg~I~~ 458 (466)
T KOG0466|consen 437 -KIALSRRVEK-HWRLIGWGQIKA 458 (466)
T ss_pred -hhhhhhhhhh-heEEecceeEeC
Confidence 3445554321 348899998864
No 64
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.96 E-value=1.1e-28 Score=277.32 Aligned_cols=157 Identities=20% Similarity=0.286 Sum_probs=131.7
Q ss_pred cccCCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEE
Q 010318 75 TEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 154 (513)
Q Consensus 75 ~~~~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~ 154 (513)
......+.+||+|+||+|||||||+++|++.+|.+.... .| ..+.+|..++|+++|+|++.+...
T Consensus 12 ~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~rgiti~~~~~~ 76 (843)
T PLN00116 12 IMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV----------AG-----DVRMTDTRADEAERGITIKSTGIS 76 (843)
T ss_pred HhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCccccc----------CC-----ceeeccCcHHHHHhCCceecceeE
Confidence 334566889999999999999999999999999876531 11 245789999999999999988877
Q ss_pred EEeC----------------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc
Q 010318 155 FETE----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL 218 (513)
Q Consensus 155 ~~~~----------------~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~ 218 (513)
+.|. ++.++|||||||.+|..++.++++.+|++|+||||.+|+. .||+.++..+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~-------~~t~~~~~~~~~~ 149 (843)
T PLN00116 77 LYYEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVC-------VQTETVLRQALGE 149 (843)
T ss_pred EEeecccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCc-------ccHHHHHHHHHHC
Confidence 7763 6889999999999999999999999999999999999954 7999999999999
Q ss_pred CCCeEEEEEeeccCCCCCc---h---HHHHHHHHhhhHhhhh
Q 010318 219 GVTKLLLVVNKMDDHTVNW---S---KERYDEIESKMTPFLK 254 (513)
Q Consensus 219 ~ip~~ivviNK~D~~~~~~---~---~~~~~~i~~~l~~~l~ 254 (513)
++| +|+++||||++..++ . ..+++.+.++++.++.
T Consensus 150 ~~p-~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~ 190 (843)
T PLN00116 150 RIR-PVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMA 190 (843)
T ss_pred CCC-EEEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 999 889999999963222 1 2567788888874433
No 65
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=8.3e-29 Score=253.41 Aligned_cols=276 Identities=23% Similarity=0.288 Sum_probs=212.3
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.+||+|+.|.|||||||.+++|+..|.+..-. ++ .|+ ...||+.+.||++|||++.++.++.|.+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~------ev--~~~-----~a~md~m~~er~rgITiqSAAt~~~w~~ 103 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIG------EV--RGG-----GATMDSMELERQRGITIQSAATYFTWRD 103 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeecc------cc--ccC-----ceeeehHHHHHhcCceeeeceeeeeecc
Confidence 4789999999999999999999999998765432 11 111 4578999999999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
++++|||||||-+|.-...++++.-|.||+|+|+..|+ +.||...+++++.+++| .|.+|||||+.+++.-.
T Consensus 104 ~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GV-------qsQt~tV~rQ~~ry~vP-~i~FiNKmDRmGa~~~~ 175 (721)
T KOG0465|consen 104 YRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGV-------ESQTETVWRQMKRYNVP-RICFINKMDRMGASPFR 175 (721)
T ss_pred ceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccce-------ehhhHHHHHHHHhcCCC-eEEEEehhhhcCCChHH
Confidence 99999999999999999999999999999999999995 48999999999999999 67899999987665311
Q ss_pred ----------------------------------------------------------HHHHHHHhhhHhhhhhc-----
Q 010318 240 ----------------------------------------------------------ERYDEIESKMTPFLKAS----- 256 (513)
Q Consensus 240 ----------------------------------------------------------~~~~~i~~~l~~~l~~~----- 256 (513)
+...+..+++-..+...
T Consensus 176 ~l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~ 255 (721)
T KOG0465|consen 176 TLNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLA 255 (721)
T ss_pred HHHHHHhhcCCchheeEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 11111111111111100
Q ss_pred -------cCc-------------ccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCC----------
Q 010318 257 -------GYN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---------- 306 (513)
Q Consensus 257 -------g~~-------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~---------- 306 (513)
... ...-+|++.-||++..|+..+++ +.++.||.|..
T Consensus 256 e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLD-------------AVvdYLPsP~Ev~n~a~~ke~ 322 (721)
T KOG0465|consen 256 EMFLEEEEPSAQQLKAAIRRATIKRSFVPVLCGSALKNKGVQPLLD-------------AVVDYLPSPSEVENYALNKET 322 (721)
T ss_pred HHHhccCCCCHHHHHHHHHHHHhhcceeeEEechhhcccCcchHHH-------------HHHHhCCChhhhcccccccCC
Confidence 000 02235777889999999988744 34455544310
Q ss_pred ----------CCC-CCceEEEEEEEcc-CCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----CeeecccCCCC
Q 010318 307 ----------DPN-GPFRMPIIDKFKD-MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGE 370 (513)
Q Consensus 307 ----------~~~-~~~~~~i~~~~~~-~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aG~ 370 (513)
..+ .||.........| .|...+.||.+|+|+.||.|+....+++++|..+.+. .++|+++.||+
T Consensus 323 ~~~ekv~l~~~~d~~Pfv~LAFKle~g~fGqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~ 402 (721)
T KOG0465|consen 323 NSKEKVTLSPSRDKDPFVALAFKLEEGRFGQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGD 402 (721)
T ss_pred CCccceEeccCCCCCceeeeEEEeeecCccceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccc
Confidence 112 2777666666544 4999999999999999999999999999999888665 36899999999
Q ss_pred eEEEEeccCCcccceeeeEEccCC
Q 010318 371 NLRIRLSGIEEEDILSGFVLSSVA 394 (513)
Q Consensus 371 ~v~i~l~~~~~~~i~~G~vl~~~~ 394 (513)
+|+ |.|+ +...||++.+..
T Consensus 403 I~a--lfGi---dcasGDTftd~~ 421 (721)
T KOG0465|consen 403 ICA--LFGI---DCASGDTFTDKQ 421 (721)
T ss_pred eee--eecc---ccccCceeccCc
Confidence 999 5666 678899999873
No 66
>PTZ00416 elongation factor 2; Provisional
Probab=99.96 E-value=1e-27 Score=269.00 Aligned_cols=153 Identities=20% Similarity=0.311 Sum_probs=130.7
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.+||+++||+|||||||+++|++.+|.++... .|. .+.+|..++|+++|+|++.+...+.|.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~----------~g~-----~~~~D~~~~E~~rgiti~~~~~~~~~~ 80 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKN----------AGD-----ARFTDTRADEQERGITIKSTGISLYYE 80 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCccccc----------CCc-----eeecccchhhHhhcceeeccceEEEee
Confidence 45778999999999999999999999999876431 221 356899999999999999987777775
Q ss_pred ----------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010318 159 ----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (513)
Q Consensus 159 ----------~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN 228 (513)
++.|+|+|||||.+|...+.++++.+|+||+||||..|+. .||+.++..+...++| +|+++|
T Consensus 81 ~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~-------~~t~~~~~~~~~~~~p-~iv~iN 152 (836)
T PTZ00416 81 HDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC-------VQTETVLRQALQERIR-PVLFIN 152 (836)
T ss_pred cccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC-------ccHHHHHHHHHHcCCC-EEEEEE
Confidence 6789999999999999999999999999999999999954 7999999999999999 889999
Q ss_pred eccCCCCCch------HHHHHHHHhhhHhhhh
Q 010318 229 KMDDHTVNWS------KERYDEIESKMTPFLK 254 (513)
Q Consensus 229 K~D~~~~~~~------~~~~~~i~~~l~~~l~ 254 (513)
|||+...++. ..++..+.++++..+.
T Consensus 153 K~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 153 KVDRAILELQLDPEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred ChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999533322 3567888888887776
No 67
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.95 E-value=4.8e-27 Score=262.98 Aligned_cols=253 Identities=22% Similarity=0.336 Sum_probs=187.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe--
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT-- 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-- 160 (513)
+--++++| ||||+++|..... .....+|||++++++.++++..
T Consensus 466 ~~~~~~~~----KTtLLD~iR~t~v-------------------------------~~~EaGGITQ~IGa~~v~~~~~~~ 510 (1049)
T PRK14845 466 IANGILVH----NTTLLDKIRKTRV-------------------------------AKKEAGGITQHIGATEIPIDVIKK 510 (1049)
T ss_pred eeeeeecc----cccHHHHHhCCCc-------------------------------ccccCCCceeccceEEEEeccccc
Confidence 34455655 9999999954332 1344599999999999887521
Q ss_pred ----------------EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEE
Q 010318 161 ----------------RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 224 (513)
Q Consensus 161 ----------------~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~i 224 (513)
.++|+|||||+.|...+.++++.+|++|||+|+++|. .+|+.+++.+++..++| +|
T Consensus 511 ~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi-------~~qT~e~I~~lk~~~iP-iI 582 (1049)
T PRK14845 511 ICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGF-------KPQTIEAINILRQYKTP-FV 582 (1049)
T ss_pred ccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccC-------CHhHHHHHHHHHHcCCC-EE
Confidence 2899999999999999989999999999999999984 37999999999999999 99
Q ss_pred EEEeeccCCCCCch---------------HHHHHHHHhh---hHhhhhhccCcc---------cCCeeEEEeeccccccc
Q 010318 225 LVVNKMDDHTVNWS---------------KERYDEIESK---MTPFLKASGYNV---------KKDVQFLPISGLMGLNM 277 (513)
Q Consensus 225 vviNK~D~~~~~~~---------------~~~~~~i~~~---l~~~l~~~g~~~---------~~~~~iipiSa~~g~gi 277 (513)
+|+||+|+. ..|. +..++++.+. +...|...|+.. ...+++||+||++|+||
T Consensus 583 VViNKiDL~-~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGI 661 (1049)
T PRK14845 583 VAANKIDLI-PGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGI 661 (1049)
T ss_pred EEEECCCCc-cccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCH
Confidence 999999984 2343 1122333222 222356666542 34689999999999999
Q ss_pred ccccccCCCCCCCcchHHHHhhh-c-cCCCCCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCc--EE
Q 010318 278 KTRVDKSLCPWWNGPCLFEALDR-I-EITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA--QV 351 (513)
Q Consensus 278 ~~l~~~~~~~w~~g~~L~~~l~~-l-~~~~~~~~~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~--~~ 351 (513)
++|+.. |..+... + .......+.|++++|.+++ +|.|+|++|.|.+|+|++||.|+++|.+. .+
T Consensus 662 d~Ll~~----------l~~l~~~~l~~~L~~~~~~~~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~ 731 (1049)
T PRK14845 662 PELLMM----------VAGLAQKYLEERLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVT 731 (1049)
T ss_pred HHHHHH----------HHHhhHHhhhhhhccCCCCceEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCCcceE
Confidence 986431 2111111 1 1123456789999999998 68999999999999999999999999764 78
Q ss_pred EEEEEEEC------------CeeecccCCCCeEEEEeccCCcccceeeeEEc
Q 010318 352 KVLAIYCD------------DNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 391 (513)
Q Consensus 352 ~V~~i~~~------------~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 391 (513)
+||+|... ..++++|.|+..|.+...|++. +..|+-+.
T Consensus 732 kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~--~~aG~~~~ 781 (1049)
T PRK14845 732 KVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEE--VLAGSPIR 781 (1049)
T ss_pred EEEEecCcccccccccccccccccccccCCCceEEecCCccc--cCCCCeEE
Confidence 99999742 2467888888888876555543 35565543
No 68
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.95 E-value=2.8e-27 Score=225.75 Aligned_cols=172 Identities=23% Similarity=0.319 Sum_probs=143.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC----
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 158 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---- 158 (513)
+||+++||+|||||||+++|++..|.++.+. .| ..+.+|..+.|++||+|+......+.+.
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~----------~g-----~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~ 65 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL----------AG-----KARYMDSREDEQERGITMKSSAISLYFEYEEE 65 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc----------CC-----ceeeccCCHHHHHhccccccceEEEEEecCcc
Confidence 5899999999999999999999998766542 11 1457899999999999999887666554
Q ss_pred ------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 159 ------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 159 ------~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
++.++|+|||||.+|...+..+++.+|++|+|||+..|.. .|+++++..+...++| +|+|+||||+
T Consensus 66 ~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~-------~~t~~~l~~~~~~~~p-~ilviNKiD~ 137 (222)
T cd01885 66 DKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVC-------VQTETVLRQALKERVK-PVLVINKIDR 137 (222)
T ss_pred cccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECCCc
Confidence 7889999999999999999999999999999999999954 6999999999999998 9999999998
Q ss_pred C------CCCchHHHHHHHHhhhHhhhhhccCcc-----cCC--e-e----EEEeeccccccc
Q 010318 233 H------TVNWSKERYDEIESKMTPFLKASGYNV-----KKD--V-Q----FLPISGLMGLNM 277 (513)
Q Consensus 233 ~------~~~~~~~~~~~i~~~l~~~l~~~g~~~-----~~~--~-~----iipiSa~~g~gi 277 (513)
. .+++.+.++.++.+++..+++.+.-.. ... + | ++..||+.|+..
T Consensus 138 ~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f 200 (222)
T cd01885 138 LILELKLSPEEAYQRLARIIEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGF 200 (222)
T ss_pred chhhhcCCHHHHHHHHHHHHHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEe
Confidence 4 344667889999999999888773210 001 2 3 777899999988
No 69
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.94 E-value=4.3e-26 Score=218.44 Aligned_cols=191 Identities=26% Similarity=0.399 Sum_probs=150.5
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcch------hHHHHHHHHHhhcCccchhhhhhccCchhhh----hcCcEEEeeeE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDD------RTIQKYEKEAKDKSRESWYMAYIMDTNEEER----IKGKTVEVGRA 153 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~------~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~----~~giTi~~~~~ 153 (513)
+|+++||+++|||||+++|.. +..+. ..+.++.++. +.|++++...+.+++..+++ ..+.+......
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~~~~~~~~~~~~~~~~~E~-~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 77 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GELDNGRGKARLNLFRHKHEV-ESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIE 77 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCcCCCCCeEEeehhhhhhhh-hcCchhhhhhhhcccCCCCceecCCCCccccccce
Confidence 488999999999999999953 44333 2355555555 47999998888887776543 22334433345
Q ss_pred EEEeCCeEEEEEeCCCCcchHHHHHHhhh--hcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 154 HFETETTRFTILDAPGHKSYVPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 154 ~~~~~~~~i~liDtPGh~~f~~~~~~~~~--~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
.++..++.++|+|||||++|.+.+++++. .+|++++|||+.+|.. .++++++.++..+++| +|+|+||+|
T Consensus 78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-------~~d~~~l~~l~~~~ip-~ivvvNK~D 149 (224)
T cd04165 78 ICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-------GMTKEHLGLALALNIP-VFVVVTKID 149 (224)
T ss_pred eeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCC-EEEEEECcc
Confidence 56778899999999999999999999986 7999999999999853 7999999999999999 899999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCc--------------------ccCCeeEEEeecccccccccccccCCCCCCCc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYN--------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG 291 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~--------------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g 291 (513)
+ . ++.++....+++..+|+..|+. ....+|++++||.+|+|++.
T Consensus 150 ~--~--~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~------------ 213 (224)
T cd04165 150 L--A--PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDL------------ 213 (224)
T ss_pred c--c--CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHH------------
Confidence 8 3 3567888888888888755433 12345999999999999997
Q ss_pred chHHHHhhhccC
Q 010318 292 PCLFEALDRIEI 303 (513)
Q Consensus 292 ~~L~~~l~~l~~ 303 (513)
|.++|..+|+
T Consensus 214 --L~~~L~~lp~ 223 (224)
T cd04165 214 --LHAFLNLLPL 223 (224)
T ss_pred --HHHHHHhcCC
Confidence 6778887775
No 70
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.93 E-value=9.5e-26 Score=221.86 Aligned_cols=174 Identities=26% Similarity=0.316 Sum_probs=141.5
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
||+++||+|||||||+++|++..|.+... |+.+ ..++.+|+.++|+++|+|++.....++|.+++++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~------------g~v~-~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~ 67 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKI------------GEVH-GGGATMDFMEQERERGITIQSAATTCFWKDHRIN 67 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCccc------------cccc-CCccccCCCccccCCCcCeeccEEEEEECCEEEE
Confidence 69999999999999999999999876532 1111 1367899999999999999999999999999999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHH
Q 010318 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 243 (513)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~ 243 (513)
|+|||||.+|...+.++++.+|++|+|||+..|+ +.|+.+++..+...++| +++++||+|+..++ ++
T Consensus 68 liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~-------~~~t~~~~~~~~~~~~p-~ivviNK~D~~~a~-----~~ 134 (270)
T cd01886 68 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGV-------EPQTETVWRQADRYNVP-RIAFVNKMDRTGAD-----FF 134 (270)
T ss_pred EEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCC-------CHHHHHHHHHHHHcCCC-EEEEEECCCCCCCC-----HH
Confidence 9999999999999999999999999999999984 47999999999999999 78899999995443 34
Q ss_pred HHHhhhHhhhhhccCcccCCeeEEEeecccc-cccccccccCCCCC
Q 010318 244 EIESKMTPFLKASGYNVKKDVQFLPISGLMG-LNMKTRVDKSLCPW 288 (513)
Q Consensus 244 ~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g-~gi~~l~~~~~~~w 288 (513)
.+.++++..+....+ ..++|+|+..+ .|+.+++....+.|
T Consensus 135 ~~~~~l~~~l~~~~~-----~~~~Pisa~~~f~g~vd~~~~~a~~~ 175 (270)
T cd01886 135 RVVEQIREKLGANPV-----PLQLPIGEEDDFRGVVDLIEMKALYW 175 (270)
T ss_pred HHHHHHHHHhCCCce-----EEEeccccCCCceEEEEccccEEEec
Confidence 455666655544322 35789999755 47777665444445
No 71
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.93 E-value=7.7e-25 Score=205.64 Aligned_cols=163 Identities=26% Similarity=0.452 Sum_probs=127.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC----
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 158 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---- 158 (513)
+||+++||+|+|||||+++|+...+ .+.++....++++|+|++.....+.+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~------------------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~ 56 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIAS------------------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKH 56 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccc------------------------hhhhccCHHHHHcCCeeeecceEEEeccccc
Confidence 4899999999999999999954311 134566677888999999988877765
Q ss_pred ----------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010318 159 ----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (513)
Q Consensus 159 ----------~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN 228 (513)
++.++|+|||||.+|.+.+..++..+|++++|+|+..+.. .++.+++.++...+.| +++++|
T Consensus 57 ~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~N 128 (192)
T cd01889 57 LRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQ-------TQTAECLVIGEILCKK-LIVVLN 128 (192)
T ss_pred ccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCC-EEEEEE
Confidence 7899999999999999999999999999999999998742 4777777777778888 899999
Q ss_pred eccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 229 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
|+|+...++.+..++++.+.+...+...++. .++++|+||++|.|+.+|
T Consensus 129 K~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~vi~iSa~~g~gi~~L 177 (192)
T cd01889 129 KIDLIPEEERERKIEKMKKKLQKTLEKTRFK---NSPIIPVSAKPGGGEAEL 177 (192)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHHhcCcC---CCCEEEEeccCCCCHHHH
Confidence 9999432222333445555554445444432 578999999999999984
No 72
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.93 E-value=5.7e-25 Score=208.34 Aligned_cols=157 Identities=27% Similarity=0.368 Sum_probs=123.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC----
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 158 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---- 158 (513)
+||+++||+|||||||+.+|.. ..+|..+.|..+|+|+..++..+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~----------------------------~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~ 52 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSG----------------------------VWTVRFKEELERNITIKLGYANAKIYKCPN 52 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhC----------------------------CCCCCCCeeEEcCCceeecccccccccccC
Confidence 5899999999999999999821 11455667788888888887776653
Q ss_pred -----------------------C------eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH
Q 010318 159 -----------------------T------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR 209 (513)
Q Consensus 159 -----------------------~------~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~ 209 (513)
+ ++++|+|||||++|.+.++++++.+|++|+|||+.++. ...++.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~------~~~~t~ 126 (203)
T cd01888 53 CGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPC------PQPQTS 126 (203)
T ss_pred cCCCCccccccccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCC------CCcchH
Confidence 3 78999999999999999999999999999999999852 125889
Q ss_pred HHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 210 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 210 e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
+++..+...+++++|+++||+|+. + +..+....+.+..+++.... ..++++++||++|.|+.++
T Consensus 127 ~~l~~~~~~~~~~iiivvNK~Dl~--~--~~~~~~~~~~i~~~~~~~~~---~~~~i~~vSA~~g~gi~~L 190 (203)
T cd01888 127 EHLAALEIMGLKHIIIVQNKIDLV--K--EEQALENYEQIKKFVKGTIA---ENAPIIPISAQLKYNIDVL 190 (203)
T ss_pred HHHHHHHHcCCCcEEEEEEchhcc--C--HHHHHHHHHHHHHHHhcccc---CCCcEEEEeCCCCCCHHHH
Confidence 999888888886689999999993 2 23344455556665554322 1468999999999999985
No 73
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.92 E-value=4.1e-24 Score=206.67 Aligned_cols=144 Identities=33% Similarity=0.463 Sum_probs=121.8
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
||+++||+|+|||||+++|++..|.+... |+.. ...+.+|..++|+++|+|+......+.+.+.+++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~------------g~v~-~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~ 67 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKL------------GSVD-KGTTRTDTMELERQRGITIFSAVASFQWEDTKVN 67 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCcccc------------cccc-CCcccCCCchhHhhCCCceeeeeEEEEECCEEEE
Confidence 68999999999999999999998876542 1111 1235788899999999999999999999999999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHH
Q 010318 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 243 (513)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~ 243 (513)
|+|||||.+|...+.++++.+|++|+|+|+..|. ..++.+++.++...++| +++++||+|+..+++ ...++
T Consensus 68 liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~-------~~~~~~~~~~~~~~~~P-~iivvNK~D~~~a~~-~~~~~ 138 (237)
T cd04168 68 LIDTPGHMDFIAEVERSLSVLDGAILVISAVEGV-------QAQTRILWRLLRKLNIP-TIIFVNKIDRAGADL-EKVYQ 138 (237)
T ss_pred EEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCC-------CHHHHHHHHHHHHcCCC-EEEEEECccccCCCH-HHHHH
Confidence 9999999999999999999999999999999984 36899999999999999 789999999976654 34555
Q ss_pred HHHhhh
Q 010318 244 EIESKM 249 (513)
Q Consensus 244 ~i~~~l 249 (513)
++.+.+
T Consensus 139 ~i~~~~ 144 (237)
T cd04168 139 EIKEKL 144 (237)
T ss_pred HHHHHH
Confidence 554443
No 74
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.3e-24 Score=217.34 Aligned_cols=306 Identities=23% Similarity=0.306 Sum_probs=215.3
Q ss_pred ccccCCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeE
Q 010318 74 ETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA 153 (513)
Q Consensus 74 ~~~~~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~ 153 (513)
.....+++.+|+.++.|+|||||||.+.|....|.+.... .| ....+|+.+.|.+||+||.....
T Consensus 11 ~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~ak----------aG-----e~Rf~DtRkDEQeR~iTIKStAI 75 (842)
T KOG0469|consen 11 ELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAK----------AG-----ETRFTDTRKDEQERGITIKSTAI 75 (842)
T ss_pred HHhccccccccceEEEEecCCcchhhHHHHHhhceeeecc----------cC-----CccccccccchhhcceEeeeeee
Confidence 4445677889999999999999999999998888776321 22 24678999999999999998776
Q ss_pred EEEe----------------CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH
Q 010318 154 HFET----------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT 217 (513)
Q Consensus 154 ~~~~----------------~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~ 217 (513)
++-. ++..+++||.|||-+|....-.+++..|+|++|||+..|++ .||...++++..
T Consensus 76 Sl~~e~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvC-------VQTETVLrQA~~ 148 (842)
T KOG0469|consen 76 SLFFEMSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVC-------VQTETVLRQAIA 148 (842)
T ss_pred eehhhhhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceE-------echHHHHHHHHH
Confidence 5321 45779999999999999999999999999999999999988 699999999999
Q ss_pred cCCCeEEEEEeeccCCCC--CchH----HHHHHHHhhhHhhhhhccCcccCCeeEE-------Eeecccccccccc----
Q 010318 218 LGVTKLLLVVNKMDDHTV--NWSK----ERYDEIESKMTPFLKASGYNVKKDVQFL-------PISGLMGLNMKTR---- 280 (513)
Q Consensus 218 ~~ip~~ivviNK~D~~~~--~~~~----~~~~~i~~~l~~~l~~~g~~~~~~~~ii-------piSa~~g~gi~~l---- 280 (513)
..+. -++++||||+.-. .+++ +.|+.+.+.++-.+.-+|..+.+++.+. ..|+++|++..-.
T Consensus 149 ERIk-Pvlv~NK~DRAlLELq~~~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~ 227 (842)
T KOG0469|consen 149 ERIK-PVLVMNKMDRALLELQLSQEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAE 227 (842)
T ss_pred hhcc-ceEEeehhhHHHHhhcCCHHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHH
Confidence 9988 5789999998321 2222 2344455555545555554333334433 3588888865210
Q ss_pred ----------------------cccCCCCCCC------------------------------------------------
Q 010318 281 ----------------------VDKSLCPWWN------------------------------------------------ 290 (513)
Q Consensus 281 ----------------------~~~~~~~w~~------------------------------------------------ 290 (513)
+....-+|..
T Consensus 228 ~Y~~KF~~~~~kmm~~LWg~~~f~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~l 307 (842)
T KOG0469|consen 228 MYAKKFGIDVRKMMNRLWGDNFFNPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTL 307 (842)
T ss_pred HHHHHhCCcHHHHHHHhhcccccCccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhccee
Confidence 0111122321
Q ss_pred --------c---------------chHHHHhh-hccCC-------------------------CCCCCCCceEEEEEEEc
Q 010318 291 --------G---------------PCLFEALD-RIEIT-------------------------PRDPNGPFRMPIIDKFK 321 (513)
Q Consensus 291 --------g---------------~~L~~~l~-~l~~~-------------------------~~~~~~~~~~~i~~~~~ 321 (513)
| .+|++.+. .+|.| .++++.|+.++|....+
T Consensus 308 k~~~kd~eGK~LlK~vMr~wLPAadallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvP 387 (842)
T KOG0469|consen 308 KGDEKDLEGKALLKVVMRKWLPAADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVP 387 (842)
T ss_pred ccccccccchHHHHHHHHHhcchHHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccc
Confidence 2 22333222 13333 34678999999999874
Q ss_pred --cCCeE-EEEEEEeeeecCCCEEEEecCCc------EEEEEEEE-------ECCeeecccCCCCeEEEEeccCCcccce
Q 010318 322 --DMGTV-VMGKVESGSVREGDSLLVMPNKA------QVKVLAIY-------CDDNRVRHAGPGENLRIRLSGIEEEDIL 385 (513)
Q Consensus 322 --~~G~v-v~g~v~sG~l~~gd~v~~~p~~~------~~~V~~i~-------~~~~~v~~a~aG~~v~i~l~~~~~~~i~ 385 (513)
+.|+. ++|||.+|.+..|.++++..-+. ..-+++|+ +.-++++.+.+|.+++ |-|++..-++
T Consensus 388 tsDkgRFyAFGRVFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiG--lvGvDqfLvK 465 (842)
T KOG0469|consen 388 TSDKGRFYAFGRVFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIG--LVGVDQFLVK 465 (842)
T ss_pred cCCCceEEEEeeeecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEE--EeehhHhhhc
Confidence 67876 78999999999999999875431 12334443 2357999999999999 5688877778
Q ss_pred eeeEEccCCCCcceeeEEE
Q 010318 386 SGFVLSSVAKPVAAVTEFI 404 (513)
Q Consensus 386 ~G~vl~~~~~~~~~~~~f~ 404 (513)
.|.+-......-..+..|.
T Consensus 466 tGTiTt~e~AHNmrvMKFS 484 (842)
T KOG0469|consen 466 TGTITTSEAAHNMRVMKFS 484 (842)
T ss_pred cCceeehhhhccceEEEee
Confidence 8877655442223334454
No 75
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=1.6e-23 Score=197.09 Aligned_cols=171 Identities=27% Similarity=0.337 Sum_probs=135.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeE
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 161 (513)
.++|+++|++|+|||||+++|++..+.+..... ...+.++..+.++.+|+|+......+.+.+..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~---------------~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~ 66 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEE---------------VEERVMDSNDLERERGITILAKNTAVTYKDTK 66 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCc---------------ccccccccchhHHhcccccccceeEEEECCEE
Confidence 579999999999999999999876665543210 01356778888889999999988889999999
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHH
Q 010318 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 241 (513)
Q Consensus 162 i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~ 241 (513)
++|+|||||++|...+..+++.+|++|+|+|+.++.+ .++..++..+...++| +++|+||+|+... +
T Consensus 67 ~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~-------~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~-----~ 133 (194)
T cd01891 67 INIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPM-------PQTRFVLKKALELGLK-PIVVINKIDRPDA-----R 133 (194)
T ss_pred EEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCC-EEEEEECCCCCCC-----C
Confidence 9999999999999999999999999999999998743 4777777777778999 8899999999432 2
Q ss_pred HHHHHhhhHhhhhhccCcc-cCCeeEEEeecccccccccc
Q 010318 242 YDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 242 ~~~i~~~l~~~l~~~g~~~-~~~~~iipiSa~~g~gi~~l 280 (513)
+....+++..++..++... ..+++++++||++|.|+.++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 134 PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred HHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccc
Confidence 3445555566665444321 12468999999999999875
No 76
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.91 E-value=4.3e-23 Score=196.98 Aligned_cols=165 Identities=20% Similarity=0.322 Sum_probs=131.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC----
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---- 158 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---- 158 (513)
++|+++||+|+|||||+++|++..+.+..+ |+.....++.+|..+.|+++|+|+......+.+.
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~------------~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~ 68 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPS------------GKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKG 68 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCccc------------ccccCCceeECCCCHHHHHcCccccccceeEEEEcCCC
Confidence 479999999999999999999888775432 2333345667899999999999998887777543
Q ss_pred -CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCC---
Q 010318 159 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT--- 234 (513)
Q Consensus 159 -~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~--- 234 (513)
.+.++|+|||||.+|...+..++..+|++|+|+|+.++.. .++.+++..+...++| +++++||+|+..
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~-------~~~~~~~~~~~~~~~p-~iiviNK~D~~~~~~ 140 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVT-------SNTERLIRHAILEGLP-IVLVINKIDRLILEL 140 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECcccCcccc
Confidence 4789999999999999999999999999999999998742 4677777878778888 899999999841
Q ss_pred ---CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEe
Q 010318 235 ---VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPI 269 (513)
Q Consensus 235 ---~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipi 269 (513)
..+...++.++.+++..+++.+++.. .+.|+|+
T Consensus 141 ~l~~~~~~~~l~~~i~~~n~~~~~~~~~~--~~~~~p~ 176 (213)
T cd04167 141 KLPPNDAYFKLRHIIDEVNNIIASFSTTL--SFLFSPE 176 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhcCCC--ceEeccC
Confidence 12344678889999999998887742 3445554
No 77
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=9.4e-23 Score=213.59 Aligned_cols=177 Identities=21% Similarity=0.353 Sum_probs=142.0
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
.....+|++++.|+|||||||.+.|+..+|.|..+-+.+ -.+||+.++|..||||+..+......
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagk---------------irfld~redeq~rgitmkss~is~~~ 69 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGK---------------IRFLDTREDEQTRGITMKSSAISLLH 69 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccc---------------eeeccccchhhhhceeeecccccccc
Confidence 345789999999999999999999999999888765332 24689999999999999999999888
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC-
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN- 236 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~- 236 (513)
+++.++|||+|||-||.....++++.+|.++++||+.+|++ .||...++++-..|.. +|+||||||+...+
T Consensus 70 ~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~-------~qt~~vlrq~~~~~~~-~~lvinkidrl~~el 141 (887)
T KOG0467|consen 70 KDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVC-------SQTYAVLRQAWIEGLK-PILVINKIDRLITEL 141 (887)
T ss_pred CceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccc-------hhHHHHHHHHHHccCc-eEEEEehhhhHHHHH
Confidence 99999999999999999999999999999999999999987 7999999999999988 89999999953211
Q ss_pred --chHHHHHH---HHhhhHhhhh-------------------hccCcccCCeeEEEeecccccccc
Q 010318 237 --WSKERYDE---IESKMTPFLK-------------------ASGYNVKKDVQFLPISGLMGLNMK 278 (513)
Q Consensus 237 --~~~~~~~~---i~~~l~~~l~-------------------~~g~~~~~~~~iipiSa~~g~gi~ 278 (513)
.+++.|.. +.++++.... ..-|.+. +-.++..||..|+|+.
T Consensus 142 ~lsp~ea~~~l~r~i~~vn~~i~~~~~~~v~l~~~~~~i~d~~~~F~p~-kgNVif~~A~~~~~f~ 206 (887)
T KOG0467|consen 142 KLSPQEAYEHLLRVIEQVNGVIGQFLGGIVELDDNWENIEDEEITFGPE-DGNVIFASALDGWGFG 206 (887)
T ss_pred hcChHHHHHHHHHHHHHhhhHHHHhhcchhhccchhhhhhhcceeecCC-CCcEEEEEeccccccc
Confidence 13334433 3444444333 1112222 2368889999999873
No 78
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=9.2e-25 Score=214.21 Aligned_cols=276 Identities=21% Similarity=0.286 Sum_probs=195.1
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.+||+|+.|+|+||||...+++|..|.+..-. .--....++|+...||+||||++.+...|+|.+
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g-------------~vddgdtvtdfla~erergitiqsaav~fdwkg 101 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAG-------------DVDDGDTVTDFLAIERERGITIQSAAVNFDWKG 101 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhccc-------------ccCCCchHHHHHHHHHhcCceeeeeeeeccccc
Confidence 4678999999999999999999999998765321 111245688999999999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
+++++||||||.+|.-...+.++.-|+++.|+|++.|+ ++||...++.+...++| -++++||||...+++ +
T Consensus 102 ~rinlidtpghvdf~leverclrvldgavav~dasagv-------e~qtltvwrqadk~~ip-~~~finkmdk~~anf-e 172 (753)
T KOG0464|consen 102 HRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGV-------EAQTLTVWRQADKFKIP-AHCFINKMDKLAANF-E 172 (753)
T ss_pred ceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCc-------ccceeeeehhccccCCc-hhhhhhhhhhhhhhh-h
Confidence 99999999999999999999999999999999999995 58999999999999999 678999999765543 1
Q ss_pred HHHHHHHhhhHh--------------------------------------------------------------------
Q 010318 240 ERYDEIESKMTP-------------------------------------------------------------------- 251 (513)
Q Consensus 240 ~~~~~i~~~l~~-------------------------------------------------------------------- 251 (513)
...+.+.+.+..
T Consensus 173 ~avdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~ql 252 (753)
T KOG0464|consen 173 NAVDSIEEKLGAKALKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQL 252 (753)
T ss_pred hHHHHHHHHhCCceEEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 122222222111
Q ss_pred ----------hhhhccCc------------------ccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccC
Q 010318 252 ----------FLKASGYN------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEI 303 (513)
Q Consensus 252 ----------~l~~~g~~------------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~ 303 (513)
+|.++.-+ ....+|+..-||.+..||..+++. .--.+|.
T Consensus 253 ad~~~dfad~~ldef~~n~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqpllda-------------vtmylps 319 (753)
T KOG0464|consen 253 ADLDADFADKFLDEFDENFDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDA-------------VTMYLPS 319 (753)
T ss_pred hhccHHHHHHHHHHhhccccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhh-------------hhhccCC
Confidence 00000000 012235556677777777665332 1122344
Q ss_pred CCCCCCC-------CceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----CeeecccCCCC
Q 010318 304 TPRDPNG-------PFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGE 370 (513)
Q Consensus 304 ~~~~~~~-------~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aG~ 370 (513)
|...... .+-.....+. +.+|..++-|+++|+|+.+-.|....++.+-.+..+... +..+++..||.
T Consensus 320 peernyeflqwykddlcalafkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagn 399 (753)
T KOG0464|consen 320 PEERNYEFLQWYKDDLCALAFKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGN 399 (753)
T ss_pred hhhcchHHHhhhhhhHHHHhhhhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhccccc
Confidence 3322211 1111112222 468999999999999999999988877776666666542 66788999998
Q ss_pred eEEEEeccCCcccceeeeEEccCC
Q 010318 371 NLRIRLSGIEEEDILSGFVLSSVA 394 (513)
Q Consensus 371 ~v~i~l~~~~~~~i~~G~vl~~~~ 394 (513)
+.-. .|+.. -..||+++...
T Consensus 400 ialt--~glk~--tatgdtivask 419 (753)
T KOG0464|consen 400 IALT--AGLKH--TATGDTIVASK 419 (753)
T ss_pred EEEE--eccee--eccCCeEEecc
Confidence 7652 34432 45788887654
No 79
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.90 E-value=6.4e-23 Score=189.88 Aligned_cols=164 Identities=23% Similarity=0.390 Sum_probs=124.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe-----
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET----- 157 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~----- 157 (513)
+||+++|++|+|||||+++|++..|.+.++. ...+.+++...++.+|+|.......+.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~ 64 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKRE----------------MKEQVLDSMDLERERGITIKAQTVRLNYKAKDG 64 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCC----------------CceEeccCChhHHHCCCeEecceEEEEEecCCC
Confidence 5899999999999999999998877665421 0134567777888899998876655533
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
.+..++|+|||||.+|...+..+++.+|++|+|+|++.+.. .++.+++..+...++| +|+++||+|+....
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~-------~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~~- 135 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVE-------AQTLANFYLALENNLE-IIPVINKIDLPSAD- 135 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCcc-------HhhHHHHHHHHHcCCC-EEEEEECCCCCcCC-
Confidence 46778999999999999999999999999999999998742 4677777777778898 89999999984321
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.....+++.. .+++. ..+++++||++|.|+.+++
T Consensus 136 ----~~~~~~~~~~---~~~~~---~~~~~~~Sa~~g~gi~~l~ 169 (179)
T cd01890 136 ----PERVKQQIED---VLGLD---PSEAILVSAKTGLGVEDLL 169 (179)
T ss_pred ----HHHHHHHHHH---HhCCC---cccEEEeeccCCCCHHHHH
Confidence 1222233322 22332 2358999999999999853
No 80
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.89 E-value=2.7e-22 Score=182.37 Aligned_cols=157 Identities=28% Similarity=0.483 Sum_probs=120.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC-CeE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TTR 161 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~ 161 (513)
.+|+++|++|+|||||+++|.... .+....+..+++|++.....+.+. +..
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~----------------------------~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 52 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIE----------------------------TDRLPEEKKRGITIDLGFAYLDLPSGKR 52 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcc----------------------------cccchhhhccCceEEeeeEEEEecCCcE
Confidence 379999999999999999994211 011223445788988888777776 789
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHH
Q 010318 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 241 (513)
Q Consensus 162 i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~ 241 (513)
+.|+||||+++|...+..+++.+|++++|+|++++.. .++.+++..+...+.+++++++||+|+.. ...
T Consensus 53 ~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~-------~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~----~~~ 121 (164)
T cd04171 53 LGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIM-------PQTREHLEILELLGIKRGLVVLTKADLVD----EDW 121 (164)
T ss_pred EEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCcc-------HhHHHHHHHHHHhCCCcEEEEEECccccC----HHH
Confidence 9999999999999989888999999999999998642 57888887777778734999999999932 223
Q ss_pred HHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 242 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 242 ~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+....+++...++..++. ..+++++||++|.|+.+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~l~ 158 (164)
T cd04171 122 LELVEEEIRELLAGTFLA---DAPIFPVSAVTGEGIEELK 158 (164)
T ss_pred HHHHHHHHHHHHHhcCcC---CCcEEEEeCCCCcCHHHHH
Confidence 344555566666554322 4689999999999999853
No 81
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.89 E-value=1.3e-22 Score=199.53 Aligned_cols=138 Identities=27% Similarity=0.409 Sum_probs=117.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeE
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 161 (513)
.+||+++||+|+|||||+++|++..|.++....- .++ ......++|..++|+++|+++......+++.++.
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v--------~~~-~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~ 72 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAV--------KAR-KSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCV 72 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCcee--------ccc-ccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEE
Confidence 4799999999999999999999999987643210 000 0113346889999999999999999999999999
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010318 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 162 i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 236 (513)
++|+|||||.+|...+..+++.+|++|+|+|+..|. ..++..++.++...++| +++++||||+..++
T Consensus 73 i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~-------~~~~~~i~~~~~~~~~P-~iivvNK~D~~~a~ 139 (267)
T cd04169 73 INLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGV-------EPQTRKLFEVCRLRGIP-IITFINKLDREGRD 139 (267)
T ss_pred EEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCc-------cHHHHHHHHHHHhcCCC-EEEEEECCccCCCC
Confidence 999999999999999999999999999999999884 35888888888888999 88999999995553
No 82
>cd03704 eRF3c_III This family represents eEF1alpha-like C-terminal region of eRF3 homologous to the domain III of EF-Tu. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. The C-terminal region is responsible for translation termination activity and is essential for viability. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-like protein with the property of aggregating into polymer-like fibrils.
Probab=99.89 E-value=1.2e-22 Score=172.33 Aligned_cols=107 Identities=59% Similarity=0.870 Sum_probs=98.9
Q ss_pred eeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEEee
Q 010318 399 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 478 (513)
Q Consensus 399 ~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~~e 478 (513)
++++|+|++.||+. .+++|.+||++++|+|+.+++|+|.+|.+.+|+++|+..+++|++|++|+.+.|+|++.+|+|+|
T Consensus 2 ~~~~F~A~i~vl~~-~~~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~d~~~g~~~~~~p~~l~~g~~a~v~i~~~~pi~~e 80 (108)
T cd03704 2 VVTEFEAQIAILEL-KRSIITAGYSAVLHIHTAVEEVTIKKLIALIDKKTGKKSKKRPRFVKSGMKVIARLETTGPICLE 80 (108)
T ss_pred cccEEEEEEEEEeC-CCCcCcCCCEEEEEEcccEEeEEEehhhhhhccccCcccccCCcEeCCCCEEEEEEEeCCcEEEE
Confidence 46889999999763 12678999999999999999999999999999999887778899999999999999999999999
Q ss_pred ecccccccceEEEEeCCeEEEEEEEEec
Q 010318 479 KFADFAQLGRFTLRTEGKTVAVGKVTEL 506 (513)
Q Consensus 479 ~~~~~~~lgrfilr~~g~tva~G~V~~~ 506 (513)
+|++++.||||+||++|+|+|+|+|+++
T Consensus 81 ~~~~~~~lGRf~lR~~g~Tva~G~V~~~ 108 (108)
T cd03704 81 KFEDFPQLGRFTLRDEGKTIAIGKVLKL 108 (108)
T ss_pred EcccCCCcccEEEEeCCCEEEEEEEEEC
Confidence 9999999999999999999999999864
No 83
>cd04093 HBS1_C HBS1_C: this family represents the C-terminal domain of Hsp70 subfamily B suppressor 1 (HBS1) which is homologous to the domain III of EF-1alpha. This group contains proteins similar to yeast Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation and, to associate with Dom34. It has been speculated that yeast Hbs1 and Dom34 proteins may function as part of a complex with a role in gene expression.
Probab=99.87 E-value=1.2e-21 Score=165.93 Aligned_cols=106 Identities=30% Similarity=0.433 Sum_probs=98.8
Q ss_pred eeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEEee
Q 010318 399 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 478 (513)
Q Consensus 399 ~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~~e 478 (513)
.+++|+|+++|++. ..+|.+||++.+|+++..++|+|.+|.+.+|.++++..+++|++|++|+.|.|+|.+++|+|+|
T Consensus 2 ~~~~f~A~v~~l~~--~~pl~~G~~~~l~~~t~~~~~~v~~I~~~~d~~t~~~~~~~~~~l~~~~~a~v~l~~~~pi~~e 79 (107)
T cd04093 2 SSTRFEARILTFNV--DKPILPGTPFELFRHSLKEPATITKLVSILDKSTGEVSKKKPRCLTKGQTAIVEIELERPIPLE 79 (107)
T ss_pred cccEEEEEEEEECC--CcccCCCCcEEEEecccEEeEEEEEeeEEeccCCCcEeccCCcCcCCCCEEEEEEEECCeEEEE
Confidence 46889999999542 3789999999999999999999999999999999987777899999999999999999999999
Q ss_pred ecccccccceEEEEeCCeEEEEEEEEec
Q 010318 479 KFADFAQLGRFTLRTEGKTVAVGKVTEL 506 (513)
Q Consensus 479 ~~~~~~~lgrfilr~~g~tva~G~V~~~ 506 (513)
+|.+++.+|||+||++|.|+|+|+|+++
T Consensus 80 ~~~~~~~~Grfilr~~~~Tva~G~I~~i 107 (107)
T cd04093 80 LFKDNKELGRVVLRRDGETIAAGLVTEI 107 (107)
T ss_pred EcccCCCcceEEEEcCCCEEEEEEEEeC
Confidence 9999999999999999999999999875
No 84
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=1.6e-21 Score=197.34 Aligned_cols=158 Identities=24% Similarity=0.341 Sum_probs=137.7
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|||+|+||+|||||+|+|+.....+.... .|.|++.....|++++
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~------------------------------aGTTRD~I~~~~e~~~ 225 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDI------------------------------AGTTRDSIDIEFERDG 225 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecCC------------------------------CCccccceeeeEEECC
Confidence 3679999999999999999999987776665543 8999999999999999
Q ss_pred eEEEEEeCCCCcc----------h-HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010318 160 TRFTILDAPGHKS----------Y-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (513)
Q Consensus 160 ~~i~liDtPGh~~----------f-~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN 228 (513)
+.|.||||+|.++ | +..++.++..+|+++||+||.+|.. .|..+.+.++...|.+ +|||+|
T Consensus 226 ~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~-------~qD~~ia~~i~~~g~~-~vIvvN 297 (444)
T COG1160 226 RKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGIS-------EQDLRIAGLIEEAGRG-IVIVVN 297 (444)
T ss_pred eEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCch-------HHHHHHHHHHHHcCCC-eEEEEE
Confidence 9999999999543 3 5556777899999999999999965 5999999999999999 899999
Q ss_pred eccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 229 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|||+ .+-+...+++.+.++...|..++|. |++++||++|.|+.++++
T Consensus 298 KWDl--~~~~~~~~~~~k~~i~~~l~~l~~a-----~i~~iSA~~~~~i~~l~~ 344 (444)
T COG1160 298 KWDL--VEEDEATMEEFKKKLRRKLPFLDFA-----PIVFISALTGQGLDKLFE 344 (444)
T ss_pred cccc--CCchhhHHHHHHHHHHHHhccccCC-----eEEEEEecCCCChHHHHH
Confidence 9999 4435577888889999988888875 999999999999998765
No 85
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=7.8e-21 Score=176.91 Aligned_cols=171 Identities=31% Similarity=0.524 Sum_probs=131.9
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
+|+++|.+|+|||||+++|+........... .....++....+..+|+|++.....+.+.+..+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGT---------------VEETFLDVLKEERERGITIKSGVATFEWPDRRVN 65 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCc---------------eecccccCCHHHHHcCCCeecceEEEeeCCEEEE
Confidence 5899999999999999999776554322110 0113355556677889999988888888899999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHH
Q 010318 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 243 (513)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~ 243 (513)
|+||||+.+|...+...++.+|++++|+|+.++.. .+..+.+..+...+.| +++++||+|+.. +..+.
T Consensus 66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~~-i~iv~nK~D~~~----~~~~~ 133 (189)
T cd00881 66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQ-------PQTREHLRIAREGGLP-IIVAINKIDRVG----EEDLE 133 (189)
T ss_pred EEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCc-------HHHHHHHHHHHHCCCC-eEEEEECCCCcc----hhcHH
Confidence 99999999999999999999999999999998742 4677788888877888 999999999943 23445
Q ss_pred HHHhhhHhhhhhccCc--------ccCCeeEEEeeccccccccccc
Q 010318 244 EIESKMTPFLKASGYN--------VKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 244 ~i~~~l~~~l~~~g~~--------~~~~~~iipiSa~~g~gi~~l~ 281 (513)
...+.+...++..+.. .....+++++||++|.|+.+++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~ 179 (189)
T cd00881 134 EVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELL 179 (189)
T ss_pred HHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHH
Confidence 5566666666665431 0125799999999999999853
No 86
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.5e-20 Score=193.97 Aligned_cols=157 Identities=19% Similarity=0.218 Sum_probs=120.9
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
...+.+||+++||-.||||+|++.|...+..--.. ..-.-...+|....|++||++|......+-.
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~--------------~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l 189 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSK--------------NTEADLRYTDTLFYEQERGCSIKSTPVTLVL 189 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccc--------------cccccccccccchhhHhcCceEeecceEEEE
Confidence 35678999999999999999999997665421100 0001124578888999999999887665432
Q ss_pred -----CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 158 -----ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 158 -----~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
.++.++|+|||||-+|...+.++++.+|+++||||+.+|++ -+|.+.++.+...+.| ++|||||+|+
T Consensus 190 ~D~~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVm-------lntEr~ikhaiq~~~~-i~vviNKiDR 261 (971)
T KOG0468|consen 190 SDSKGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVM-------LNTERIIKHAIQNRLP-IVVVINKVDR 261 (971)
T ss_pred ecCcCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCce-------eeHHHHHHHHHhccCc-EEEEEehhHH
Confidence 45789999999999999999999999999999999999987 5899999999999999 9999999997
Q ss_pred CCCC------chHHHHHHHHhhhHhhhhhc
Q 010318 233 HTVN------WSKERYDEIESKMTPFLKAS 256 (513)
Q Consensus 233 ~~~~------~~~~~~~~i~~~l~~~l~~~ 256 (513)
.-.+ ....++..+..+++..+..+
T Consensus 262 LilELkLPP~DAY~KLrHii~~iN~~is~~ 291 (971)
T KOG0468|consen 262 LILELKLPPMDAYYKLRHIIDEINNLISTF 291 (971)
T ss_pred HHHHhcCChHHHHHHHHHHHHHhcchhhhc
Confidence 3111 12344556666666544433
No 87
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=1.4e-21 Score=174.88 Aligned_cols=145 Identities=20% Similarity=0.259 Sum_probs=99.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
++|+++|+||+|||||+|+|.+.. ....+| +|.|++.....+.+.+..+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~---------------------~~v~n~----------pG~Tv~~~~g~~~~~~~~~ 49 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK---------------------QKVGNW----------PGTTVEKKEGIFKLGDQQV 49 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS---------------------EEEEES----------TTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC---------------------ceecCC----------CCCCeeeeeEEEEecCceE
Confidence 479999999999999999994332 111222 8999999999999999999
Q ss_pred EEEeCCCCcch----HHHH--HHh--hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCC
Q 010318 163 TILDAPGHKSY----VPNM--ISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 163 ~liDtPGh~~f----~~~~--~~~--~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~ 234 (513)
.|+|+||.-++ ..+. ... ...+|++|+|+||++- .+....+..+..+|+| +|+|+||||+..
T Consensus 50 ~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l---------~r~l~l~~ql~e~g~P-~vvvlN~~D~a~ 119 (156)
T PF02421_consen 50 ELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNL---------ERNLYLTLQLLELGIP-VVVVLNKMDEAE 119 (156)
T ss_dssp EEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGH---------HHHHHHHHHHHHTTSS-EEEEEETHHHHH
T ss_pred EEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCH---------HHHHHHHHHHHHcCCC-EEEEEeCHHHHH
Confidence 99999995332 1111 111 3589999999999863 2556666777889999 999999999832
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
...-.... +.+ -+.+ ++|++|+||++|.|+++|.
T Consensus 120 ~~g~~id~----~~L---s~~L------g~pvi~~sa~~~~g~~~L~ 153 (156)
T PF02421_consen 120 RKGIEIDA----EKL---SERL------GVPVIPVSARTGEGIDELK 153 (156)
T ss_dssp HTTEEE-H----HHH---HHHH------TS-EEEEBTTTTBTHHHHH
T ss_pred HcCCEECH----HHH---HHHh------CCCEEEEEeCCCcCHHHHH
Confidence 11111111 122 2223 3589999999999999853
No 88
>cd03705 EF1_alpha_III Domain III of EF-1. Eukaryotic elongation factor 1 (EF-1) is responsible for the GTP-dependent binding of aminoacyl-tRNAs to ribosomes. EF-1 is composed of four subunits: the alpha chain, which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This family is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF-1 alpha) and eukaryotes (eEF-1 alpha).
Probab=99.85 E-value=3.1e-21 Score=162.63 Aligned_cols=102 Identities=33% Similarity=0.624 Sum_probs=96.1
Q ss_pred eeeEEEEEEEEeccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEEe
Q 010318 399 AVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICT 477 (513)
Q Consensus 399 ~~~~f~a~i~~~~~l~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~~ 477 (513)
.+++|+|++.|| ++ .+|.+||++.+|+++.+++|+|.+|.+.+|.++++..+++|++|++|+.+.|+|++.+|+|+
T Consensus 2 ~~~~f~A~v~~l---~~~~pl~~G~~~~~~~~t~~~~~~I~~i~~~~d~~t~~~~~~~~~~l~~n~~a~v~l~~~~pi~~ 78 (104)
T cd03705 2 VAESFTAQVIVL---NHPGQIKPGYTPVLDCHTAHVACRFAEILSKIDPRTGKKLEENPKFLKSGDAAIVKIVPQKPLVV 78 (104)
T ss_pred cccEEEEEEEEE---CCCCcccCCceEEEEeccceEeEEEEhhhhhhccccCCccccCcCccCCCCEEEEEEEECCeeEE
Confidence 368899999994 45 78999999999999999999999999999999998777789999999999999999999999
Q ss_pred eecccccccceEEEEeCCeEEEEEEE
Q 010318 478 EKFADFAQLGRFTLRTEGKTVAVGKV 503 (513)
Q Consensus 478 e~~~~~~~lgrfilr~~g~tva~G~V 503 (513)
|+|.+++.+|||+|||+|.|+|+|+|
T Consensus 79 e~~~~~~~lgrf~lrd~~~Tva~G~v 104 (104)
T cd03705 79 ETFSEYPPLGRFAVRDMGQTVAVGIV 104 (104)
T ss_pred EEcccCCCccCEEEEeCCCEEEEEEC
Confidence 99999999999999999999999986
No 89
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=8.3e-21 Score=192.15 Aligned_cols=146 Identities=21% Similarity=0.254 Sum_probs=120.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
+.|||+|+||+|||||+|+|....-++.++. .|+|.|..+...+|.++.|
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~------------------------------pGvTRDr~y~~~~~~~~~f 53 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDT------------------------------PGVTRDRIYGDAEWLGREF 53 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecC------------------------------CCCccCCccceeEEcCceE
Confidence 7899999999999999999977666555443 9999999999999999999
Q ss_pred EEEeCCCCcc-----h----HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCC
Q 010318 163 TILDAPGHKS-----Y----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 233 (513)
Q Consensus 163 ~liDtPGh~~-----f----~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 233 (513)
.+|||+|... + ...+..++..||++|||||+..|++ ++..+.+.+++..+.| +|+|+||+|-.
T Consensus 54 ~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git-------~~D~~ia~~Lr~~~kp-viLvvNK~D~~ 125 (444)
T COG1160 54 ILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGIT-------PADEEIAKILRRSKKP-VILVVNKIDNL 125 (444)
T ss_pred EEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCC-EEEEEEcccCc
Confidence 9999999763 2 3444566789999999999999964 6899999999988888 99999999972
Q ss_pred CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. +.....+.++|+. .++|+||.+|.|+.+|.+
T Consensus 126 ~~-----------e~~~~efyslG~g-----~~~~ISA~Hg~Gi~dLld 158 (444)
T COG1160 126 KA-----------EELAYEFYSLGFG-----EPVPISAEHGRGIGDLLD 158 (444)
T ss_pred hh-----------hhhHHHHHhcCCC-----CceEeehhhccCHHHHHH
Confidence 11 1222335667775 799999999999999744
No 90
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.84 E-value=3.3e-20 Score=183.39 Aligned_cols=165 Identities=22% Similarity=0.338 Sum_probs=128.1
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
||+++||+|+|||||+++|++..|.+... |... ...+++|..++++.+++|+......+.++++.++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~------------g~v~-~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~ 67 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRL------------GSVE-DGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKIN 67 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccC------------Ceec-CCcccCCCCHHHHhhcccccceeEEEEECCEEEE
Confidence 68999999999999999999887765432 1111 2346788999999999999999899999999999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHH
Q 010318 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYD 243 (513)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~ 243 (513)
|||||||.+|...+..+++.+|++|+|+|+..+.. .++..++..+...++| +++++||+|+...+ ++
T Consensus 68 liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~-------~~~~~~~~~~~~~~~p-~iivvNK~D~~~~~-----~~ 134 (268)
T cd04170 68 LIDTPGYADFVGETRAALRAADAALVVVSAQSGVE-------VGTEKLWEFADEAGIP-RIIFINKMDRERAD-----FD 134 (268)
T ss_pred EEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECCccCCCC-----HH
Confidence 99999999999999999999999999999999843 5888889899999999 77899999995443 34
Q ss_pred HHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 244 EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 244 ~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
...++++..+.. .+-.+.+...+|.|+..+.
T Consensus 135 ~~~~~l~~~~~~-------~~~~~~ip~~~~~~~~~~v 165 (268)
T cd04170 135 KTLAALQEAFGR-------PVVPLQLPIGEGDDFKGVV 165 (268)
T ss_pred HHHHHHHHHhCC-------CeEEEEecccCCCceeEEE
Confidence 445555444321 1122333456677665543
No 91
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.84 E-value=4.2e-20 Score=168.83 Aligned_cols=155 Identities=30% Similarity=0.392 Sum_probs=112.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC---C
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---T 159 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~ 159 (513)
+.|+++|++|+|||||+++|..... . .....++|.+.....+... +
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~--~-----------------------------~~~~~~~t~~~~~~~~~~~~~~~ 49 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNV--A-----------------------------AGEAGGITQHIGAFEVPAEVLKI 49 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhccc--c-----------------------------cccCCCeEEeeccEEEecccCCc
Confidence 4699999999999999999943211 0 1122567777766667664 7
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
..++|+||||+..|...+..++..+|++++|+|++++.. .++.+.+..+...++| +++++||+|+... ..
T Consensus 50 ~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~--~~ 119 (168)
T cd01887 50 PGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVM-------PQTIEAIKLAKAANVP-FIVALNKIDKPNA--NP 119 (168)
T ss_pred ceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCC-EEEEEEceecccc--cH
Confidence 899999999999999888888999999999999998742 5788888888889999 8999999998422 22
Q ss_pred HHHHHHHhhhHhhh-hhccCcccCCeeEEEeecccccccccccc
Q 010318 240 ERYDEIESKMTPFL-KASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 240 ~~~~~i~~~l~~~l-~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
..+......+.... +.. ...++++++||++|.|+.++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~gi~~l~~ 159 (168)
T cd01887 120 ERVKNELSELGLQGEDEW----GGDVQIVPTSAKTGEGIDDLLE 159 (168)
T ss_pred HHHHHHHHHhhccccccc----cCcCcEEEeecccCCCHHHHHH
Confidence 22222222111111 011 1246899999999999998543
No 92
>COG1159 Era GTPase [General function prediction only]
Probab=99.84 E-value=1.9e-20 Score=179.94 Aligned_cols=155 Identities=23% Similarity=0.240 Sum_probs=111.2
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+..-|||+|+||+|||||+|+|++..-.+.++..| .|......-+..+
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~Q------------------------------TTR~~I~GI~t~~ 52 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQ------------------------------TTRNRIRGIVTTD 52 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcc------------------------------hhhhheeEEEEcC
Confidence 3567789999999999999999998887777665432 2333333345667
Q ss_pred CeEEEEEeCCCCcc--------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010318 159 TTRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 230 (513)
Q Consensus 159 ~~~i~liDtPGh~~--------f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 230 (513)
+.++.|+||||... ..+....++..+|+++||||+.++ +++.....+..++..+.| +|+++||+
T Consensus 53 ~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~-------~~~~d~~il~~lk~~~~p-vil~iNKI 124 (298)
T COG1159 53 NAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEG-------WGPGDEFILEQLKKTKTP-VILVVNKI 124 (298)
T ss_pred CceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecccc-------CCccHHHHHHHHhhcCCC-eEEEEEcc
Confidence 89999999999322 244455567899999999999997 346777788888887788 88999999
Q ss_pred cCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 231 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 231 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|.... +..+..+.+.+ -....| ..++|+||++|.|+..|.+
T Consensus 125 D~~~~---~~~l~~~~~~~---~~~~~f-----~~ivpiSA~~g~n~~~L~~ 165 (298)
T COG1159 125 DKVKP---KTVLLKLIAFL---KKLLPF-----KEIVPISALKGDNVDTLLE 165 (298)
T ss_pred ccCCc---HHHHHHHHHHH---HhhCCc-----ceEEEeeccccCCHHHHHH
Confidence 98432 12122222222 222333 3799999999999998644
No 93
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=99.82 E-value=1.6e-19 Score=150.36 Aligned_cols=98 Identities=42% Similarity=0.711 Sum_probs=86.6
Q ss_pred CcceeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceE
Q 010318 396 PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSI 475 (513)
Q Consensus 396 ~~~~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi 475 (513)
|++++++|+|++.+|+. ..+|..||++++|+++.+++|++.+|.+.+| +|+.. |++|++|+.|.|+|++++|+
T Consensus 1 ~~k~~~~f~A~v~vl~~--~~~i~~Gy~~~~~~~t~~~~~~i~~i~~~~~--~~~~~---p~~l~~g~~a~v~l~~~~pi 73 (99)
T PF03143_consen 1 PIKAVNRFEAQVIVLDH--PKPISPGYQPVLHIHTADVPCRIVKIISKID--TGKKK---PKFLKPGDRAVVELEFQKPI 73 (99)
T ss_dssp SSEEEEEEEEEEEESSG--SS-BETTEEEEEEETTEEEEEEEEEEEEEES--TTTEE----SEB-TTEEEEEEEEEEEEE
T ss_pred CCcccCEEEEEEEEEcC--CccccCCCccceEEeeceeeEEEEeeeeccc--ccccc---ccccccccccccceeeccce
Confidence 56889999999999553 4899999999999999999999999999998 54433 99999999999999999999
Q ss_pred EeeecccccccceEEEEeCCeEEEEEEEEec
Q 010318 476 CTEKFADFAQLGRFTLRTEGKTVAVGKVTEL 506 (513)
Q Consensus 476 ~~e~~~~~~~lgrfilr~~g~tva~G~V~~~ 506 (513)
|+|+|. ||+||++|+|+|+|+|+++
T Consensus 74 ~ve~~~------Rf~lR~~~~Tia~G~V~~v 98 (99)
T PF03143_consen 74 CVEPFS------RFILRDGGKTIAVGVVTKV 98 (99)
T ss_dssp EETTTT------EEEEEETTEEEEEEEEEEE
T ss_pred eeecCc------eEEEccCCeEEEEEEEEEe
Confidence 999985 9999999999999999986
No 94
>cd04095 CysN_NoDQ_III TCysN_NoDQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which s
Probab=99.82 E-value=1.1e-19 Score=152.88 Aligned_cols=100 Identities=15% Similarity=0.256 Sum_probs=91.9
Q ss_pred eeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEEee
Q 010318 399 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 478 (513)
Q Consensus 399 ~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~~e 478 (513)
.+.+|+|+++|++ +.+|.+||.+.+|+|+.+++|+|.+|.+.+|+++++. .+|++|..|+.|.|+|++++|+|+|
T Consensus 2 ~~~~f~a~i~~l~---~~pl~~G~~~~l~~~t~~~~~~i~~i~~~id~~t~~~--~~~~~l~~n~~a~v~i~~~~pi~~d 76 (103)
T cd04095 2 VSDQFAATLVWMD---EEPLRPGRKYLLKLGTRTVRATVTAIKYRVDVNTLEH--EAADTLELNDIGRVELSLSKPLAFD 76 (103)
T ss_pred ccceeeEEEEEec---CcccCCCCEEEEEEcCCEEEEEEeeeeEEEcCCCCCc--cCCCEECCCCeEEEEEEeCCccEec
Confidence 4678999999954 5589999999999999999999999999999999873 4789999999999999999999999
Q ss_pred ecccccccceEEEEe--CCeEEEEEEE
Q 010318 479 KFADFAQLGRFTLRT--EGKTVAVGKV 503 (513)
Q Consensus 479 ~~~~~~~lgrfilr~--~g~tva~G~V 503 (513)
+|.+++.+|||+|+| +|.|+|+|+|
T Consensus 77 ~~~~~~~~GrfiliD~~~~~tva~G~i 103 (103)
T cd04095 77 PYRENRATGSFILIDRLTNATVGAGMI 103 (103)
T ss_pred chhhCCCcceEEEEECCCCcEEEEEeC
Confidence 999999999999955 5999999986
No 95
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=2.1e-19 Score=189.76 Aligned_cols=157 Identities=23% Similarity=0.281 Sum_probs=122.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+++|++|+|||||+++|++....+. ....|.|.+.....+..++
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~------------------------------~~~~gtt~~~~~~~~~~~~ 219 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIV------------------------------SDIAGTTRDSIDIPFERNG 219 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeec------------------------------CCCCCceECcEeEEEEECC
Confidence 4568999999999999999999965432211 1237888888777888888
Q ss_pred eEEEEEeCCCCcchH-----------HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010318 160 TRFTILDAPGHKSYV-----------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (513)
Q Consensus 160 ~~i~liDtPGh~~f~-----------~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN 228 (513)
..+.|+||||+.++. ..+..+++.+|++|+|+|+.+|.. .++.+.+..+...++| +|+|+|
T Consensus 220 ~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~-------~~~~~~~~~~~~~~~~-iiiv~N 291 (429)
T TIGR03594 220 KKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGIT-------EQDLRIAGLILEAGKA-LVIVVN 291 (429)
T ss_pred cEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCc-EEEEEE
Confidence 999999999986542 223456789999999999999854 5788888888888999 999999
Q ss_pred eccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 229 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+|+. + +...++++.+.+...+...+ .++++++||++|.|+.++++
T Consensus 292 K~Dl~--~-~~~~~~~~~~~~~~~~~~~~-----~~~vi~~SA~~g~~v~~l~~ 337 (429)
T TIGR03594 292 KWDLV--K-DEKTREEFKKELRRKLPFLD-----FAPIVFISALTGQGVDKLLD 337 (429)
T ss_pred CcccC--C-CHHHHHHHHHHHHHhcccCC-----CCceEEEeCCCCCCHHHHHH
Confidence 99994 2 34556677777766665543 35899999999999998765
No 96
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=3.4e-19 Score=188.37 Aligned_cols=156 Identities=24% Similarity=0.319 Sum_probs=122.6
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+++|++|+|||||+++|++....+. ....|.|.+.....+.+.+
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~------------------------------~~~~gtt~~~~~~~~~~~~ 220 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIV------------------------------SDIAGTTRDSIDTPFERDG 220 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceee------------------------------cCCCCceEEEEEEEEEECC
Confidence 3579999999999999999999975433221 1237889888878888899
Q ss_pred eEEEEEeCCCCcch-----------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010318 160 TRFTILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (513)
Q Consensus 160 ~~i~liDtPGh~~f-----------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN 228 (513)
..+.|+||||+.+. ...++++++.+|++|+|+|+..|.. .|+.+.+.++...+.| +||++|
T Consensus 221 ~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~-------~~~~~i~~~~~~~~~~-~ivv~N 292 (435)
T PRK00093 221 QKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGIT-------EQDLRIAGLALEAGRA-LVIVVN 292 (435)
T ss_pred eeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCc-EEEEEE
Confidence 99999999997542 2334567889999999999999843 5888888888888998 999999
Q ss_pred eccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 229 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|||+. ++...+++.+.+...+...+ .++++++||++|.|+.++++
T Consensus 293 K~Dl~----~~~~~~~~~~~~~~~l~~~~-----~~~i~~~SA~~~~gv~~l~~ 337 (435)
T PRK00093 293 KWDLV----DEKTMEEFKKELRRRLPFLD-----YAPIVFISALTGQGVDKLLE 337 (435)
T ss_pred CccCC----CHHHHHHHHHHHHHhccccc-----CCCEEEEeCCCCCCHHHHHH
Confidence 99993 23445666666666665443 35899999999999998765
No 97
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.80 E-value=1.7e-18 Score=158.37 Aligned_cols=155 Identities=23% Similarity=0.275 Sum_probs=108.7
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeE
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 161 (513)
+++|+++|++|+|||||+++|+....... ...++.|.+.....+..++..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 51 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV------------------------------SDIAGTTRDSIDVPFEYDGKK 51 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec------------------------------cCCCCCccCceeeEEEECCee
Confidence 57899999999999999999954322111 112455555555667777888
Q ss_pred EEEEeCCCCcch----------H-HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010318 162 FTILDAPGHKSY----------V-PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 230 (513)
Q Consensus 162 i~liDtPGh~~f----------~-~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 230 (513)
+.++||||+.+. . ..+...+..+|++|+|+|+..+.. .+....+..+...+.| +++++||+
T Consensus 52 ~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~nK~ 123 (174)
T cd01895 52 YTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGIT-------EQDLRIAGLILEEGKA-LVIVVNKW 123 (174)
T ss_pred EEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcc-------hhHHHHHHHHHhcCCC-EEEEEecc
Confidence 999999997543 1 233455679999999999998743 3455556666667888 89999999
Q ss_pred cCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 231 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 231 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
|+. +......+.+.+.+...+...+ ..+++++||++|.|+.++.
T Consensus 124 Dl~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~~ 167 (174)
T cd01895 124 DLV--EKDSKTMKEFKKEIRRKLPFLD-----YAPIVFISALTGQGVDKLF 167 (174)
T ss_pred ccC--CccHHHHHHHHHHHHhhccccc-----CCceEEEeccCCCCHHHHH
Confidence 994 3222345555555555444322 3589999999999998853
No 98
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.79 E-value=1.9e-18 Score=170.98 Aligned_cols=148 Identities=18% Similarity=0.204 Sum_probs=98.8
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
.|+++|++|+|||||+|+|++....+... ..+.|.+.....+...+.++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~------------------------------~~~TTr~~i~~i~~~~~~qii 51 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSP------------------------------KAQTTRNRISGIHTTGASQII 51 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCC------------------------------CCCcccCcEEEEEEcCCcEEE
Confidence 58999999999999999996433221111 133444433333445667899
Q ss_pred EEeCCCCcch--------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC
Q 010318 164 ILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 164 liDtPGh~~f--------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 235 (513)
|+||||+... .+.+..++..+|++++|+|++.+.. .....+..+...+.| +++|+||+|+ .
T Consensus 52 ~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~--------~~~~i~~~l~~~~~p-~ilV~NK~Dl--~ 120 (270)
T TIGR00436 52 FIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNG--------DGEFVLTKLQNLKRP-VVLTRNKLDN--K 120 (270)
T ss_pred EEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCc--------hHHHHHHHHHhcCCC-EEEEEECeeC--C
Confidence 9999996432 2334556789999999999997631 224556667778888 8999999999 3
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+ ... +...+..+....++ .+++|+||++|.|++++.+
T Consensus 121 ~--~~~---~~~~~~~~~~~~~~-----~~v~~iSA~~g~gi~~L~~ 157 (270)
T TIGR00436 121 F--KDK---LLPLIDKYAILEDF-----KDIVPISALTGDNTSFLAA 157 (270)
T ss_pred C--HHH---HHHHHHHHHhhcCC-----CceEEEecCCCCCHHHHHH
Confidence 2 111 22223333333333 2799999999999998644
No 99
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.79 E-value=1.3e-18 Score=158.98 Aligned_cols=156 Identities=23% Similarity=0.251 Sum_probs=102.7
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
+|+++|++|+|||||+++|....+... +. .......|+......+.+++..+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~--------------~~-------------~~~~~~~t~~~~~~~~~~~~~~~~ 53 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYK--------------GL-------------PPSKITPTVGLNIGTIEVGNARLK 53 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhccccc--------------CC-------------cccccCCccccceEEEEECCEEEE
Confidence 589999999999999999954332100 00 000123344444455667789999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCCCCchH
Q 010318 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
|+|||||..|...+...++.+|++++|+|+..... + ......+..+. ..++| +++++||+|+.... .
T Consensus 54 l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~~-~- 124 (167)
T cd04160 54 FWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRER---F---EESKSALEKVLRNEALEGVP-LLILANKQDLPDAL-S- 124 (167)
T ss_pred EEECCCChhhHHHHHHHhCCCCEEEEEEECchHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEEccccccCC-C-
Confidence 99999999999888888999999999999986421 1 12222222222 24788 99999999984321 1
Q ss_pred HHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
..++.+.+.......+. ..++++++||++|.|+.++
T Consensus 125 --~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 125 --VEEIKEVFQDKAEEIGR---RDCLVLPVSALEGTGVREG 160 (167)
T ss_pred --HHHHHHHhccccccccC---CceEEEEeeCCCCcCHHHH
Confidence 22333333333322332 2578999999999999885
No 100
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=2.1e-18 Score=155.42 Aligned_cols=143 Identities=21% Similarity=0.247 Sum_probs=103.1
Q ss_pred EEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEEEE
Q 010318 86 VFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTIL 165 (513)
Q Consensus 86 ~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~li 165 (513)
+++|++|+|||||+++|+...... .+...+.|.+.....+...++.+.|+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~~~~i~ 50 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAI------------------------------VEDTPGVTRDRIYGEAEWGGREFILI 50 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEe------------------------------ecCCCCceeCceeEEEEECCeEEEEE
Confidence 589999999999999995321110 11125667666667777888999999
Q ss_pred eCCCCcchHH--------HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 166 DAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 166 DtPGh~~f~~--------~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
||||+.++.. .....++.+|++++|+|+.++.. ....+++..++..+.| +++|+||+|+...
T Consensus 51 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-------~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~-- 120 (157)
T cd01894 51 DTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLT-------PADEEIAKYLRKSKKP-VILVVNKVDNIKE-- 120 (157)
T ss_pred ECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCC-------ccHHHHHHHHHhcCCC-EEEEEECcccCCh--
Confidence 9999988543 44556788999999999988642 3556677778888888 9999999999432
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. . ...+...++. +++++|+++|.|+.++++
T Consensus 121 ~~-~--------~~~~~~~~~~-----~~~~~Sa~~~~gv~~l~~ 151 (157)
T cd01894 121 ED-E--------AAEFYSLGFG-----EPIPISAEHGRGIGDLLD 151 (157)
T ss_pred HH-H--------HHHHHhcCCC-----CeEEEecccCCCHHHHHH
Confidence 11 1 1223333432 689999999999998643
No 101
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.77 E-value=4.9e-18 Score=157.60 Aligned_cols=153 Identities=18% Similarity=0.212 Sum_probs=106.4
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
...+.++|+|+|++|+|||||+++|...... . ......|.|.+...+.+
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~-~----------------------------~~~~~~~~t~~~~~~~~-- 62 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKL-A----------------------------RTSKTPGRTQLINFFEV-- 62 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-c----------------------------cccCCCCcceEEEEEEe--
Confidence 3466789999999999999999999543210 0 00112456665544333
Q ss_pred CCeEEEEEeCCCCc----------chHHHH---HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEE
Q 010318 158 ETTRFTILDAPGHK----------SYVPNM---ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 224 (513)
Q Consensus 158 ~~~~i~liDtPGh~----------~f~~~~---~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~i 224 (513)
+ ..+.|+||||+. .|...+ ++....+|++++|+|++.+.. .++.+.+.++...+.| ++
T Consensus 63 ~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~-------~~~~~~~~~~~~~~~p-vi 133 (179)
T TIGR03598 63 N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLK-------ELDLEMLEWLRERGIP-VL 133 (179)
T ss_pred C-CcEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCC-------HHHHHHHHHHHHcCCC-EE
Confidence 2 379999999963 233222 233345789999999998743 4666777888888999 89
Q ss_pred EEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccc
Q 010318 225 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMK 278 (513)
Q Consensus 225 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~ 278 (513)
+++||+|+. + ....+...++++..++..+. ..+++++||++|+|++
T Consensus 134 iv~nK~D~~--~--~~~~~~~~~~i~~~l~~~~~----~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 134 IVLTKADKL--K--KSELNKQLKKIKKALKKDAD----DPSVQLFSSLKKTGID 179 (179)
T ss_pred EEEECcccC--C--HHHHHHHHHHHHHHHhhccC----CCceEEEECCCCCCCC
Confidence 999999983 2 33455666777777776542 3589999999999984
No 102
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.77 E-value=4.3e-18 Score=179.74 Aligned_cols=145 Identities=21% Similarity=0.273 Sum_probs=111.2
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
+|+++|++|+|||||+|+|+.....+. ....|+|.+.....+.+.+..+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v------------------------------~~~~g~t~d~~~~~~~~~~~~~~ 50 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIV------------------------------SDTPGVTRDRKYGDAEWGGREFI 50 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCccee------------------------------cCCCCcccCceEEEEEECCeEEE
Confidence 489999999999999999954332211 11268888888888889999999
Q ss_pred EEeCCCC--------cchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC
Q 010318 164 ILDAPGH--------KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 164 liDtPGh--------~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 235 (513)
|+||||+ +.+...+..++..+|++|+|+|+..|.. ....+.+..++..+.| +++|+||+|+...
T Consensus 51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~-------~~d~~i~~~l~~~~~p-iilVvNK~D~~~~ 122 (429)
T TIGR03594 51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLT-------PEDEEIAKWLRKSGKP-VILVANKIDGKKE 122 (429)
T ss_pred EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHhCCC-EEEEEECccCCcc
Confidence 9999997 4455666777899999999999998843 5677788888888999 9999999998432
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+. .. ..+.++|+. +++++||.+|.|+.++++
T Consensus 123 ~~-------~~----~~~~~lg~~-----~~~~vSa~~g~gv~~ll~ 153 (429)
T TIGR03594 123 DA-------VA----AEFYSLGFG-----EPIPISAEHGRGIGDLLD 153 (429)
T ss_pred cc-------cH----HHHHhcCCC-----CeEEEeCCcCCChHHHHH
Confidence 21 01 113345553 689999999999998644
No 103
>PRK15494 era GTPase Era; Provisional
Probab=99.77 E-value=7.4e-18 Score=171.55 Aligned_cols=152 Identities=22% Similarity=0.293 Sum_probs=103.2
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+..+|+++|++|+|||||+++|++....+.. ...+.|.+.....+..++
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs------------------------------~k~~tTr~~~~~~~~~~~ 99 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVT------------------------------PKVQTTRSIITGIITLKD 99 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeecc------------------------------CCCCCccCcEEEEEEeCC
Confidence 46689999999999999999999643221111 113445544445567788
Q ss_pred eEEEEEeCCCCcch--------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 160 TRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 160 ~~i~liDtPGh~~f--------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
.++.|+||||..+. .+.....+..+|++|+|||+..+. .......+..++..+.| .|+|+||+|
T Consensus 100 ~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~-------~~~~~~il~~l~~~~~p-~IlViNKiD 171 (339)
T PRK15494 100 TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSF-------DDITHNILDKLRSLNIV-PIFLLNKID 171 (339)
T ss_pred eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCC-------CHHHHHHHHHHHhcCCC-EEEEEEhhc
Confidence 99999999997432 223334567999999999988763 23445566677777888 678999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+... ...+ +...+...+ ...+++|+||++|.|++++++
T Consensus 172 l~~~-----~~~~----~~~~l~~~~----~~~~i~~iSAktg~gv~eL~~ 209 (339)
T PRK15494 172 IESK-----YLND----IKAFLTENH----PDSLLFPISALSGKNIDGLLE 209 (339)
T ss_pred Cccc-----cHHH----HHHHHHhcC----CCcEEEEEeccCccCHHHHHH
Confidence 8321 1222 223333222 124799999999999998644
No 104
>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G. Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s
Probab=99.76 E-value=4.9e-18 Score=142.54 Aligned_cols=101 Identities=32% Similarity=0.537 Sum_probs=92.0
Q ss_pred eeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEEee
Q 010318 399 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTE 478 (513)
Q Consensus 399 ~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~~e 478 (513)
++++|+|++.+++. ..+|+.||++.+|+++.+++|+|..|.+.+|.++ ..+++++.|++|+.+.|+|++++|+|++
T Consensus 2 ~~~~f~a~i~~l~~--~~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~--~~~~~~~~l~~~~~a~v~l~~~~pi~~e 77 (102)
T cd01513 2 AVDKFVAEIYVLDH--PEPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKT--EEKKPPEFLKSGERGIVEVELQKPVALE 77 (102)
T ss_pred cccEEEEEEEEECC--CcccCCCCcEEEEeecCEEeEEEEeeeeecccCc--ccccCchhhcCCCEEEEEEEECCceEEE
Confidence 46899999988542 3689999999999999999999999999999874 3456789999999999999999999999
Q ss_pred ecccccccceEEEEeCCeEEEEEEE
Q 010318 479 KFADFAQLGRFTLRTEGKTVAVGKV 503 (513)
Q Consensus 479 ~~~~~~~lgrfilr~~g~tva~G~V 503 (513)
+|.+++.+|||+||+.|+|+|+|+|
T Consensus 78 ~~~~~~~~grfilr~~~~tvg~G~V 102 (102)
T cd01513 78 TFSENQEGGRFALRDGGRTVGAGLI 102 (102)
T ss_pred EhhhCCCcccEEEEeCCCEEEEEEC
Confidence 9999999999999999999999986
No 105
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=9.1e-18 Score=178.68 Aligned_cols=155 Identities=20% Similarity=0.226 Sum_probs=112.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
..++|+++|++|+|||||+++|+.....+. ....|.|.+.....+.+++.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~------------------------------s~~~gtT~d~~~~~~~~~~~ 259 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVV------------------------------DDVAGTTVDPVDSLIELGGK 259 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccc------------------------------cCCCCccCCcceEEEEECCE
Confidence 468999999999999999999964322111 11267787777777888899
Q ss_pred EEEEEeCCCCcc---------hHHH--HHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEee
Q 010318 161 RFTILDAPGHKS---------YVPN--MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 229 (513)
Q Consensus 161 ~i~liDtPGh~~---------f~~~--~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK 229 (513)
.+.|+||||..+ |... ....++.+|++|+|+|++++.. .+..+.+..+...++| +|+|+||
T Consensus 260 ~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s-------~~~~~~~~~~~~~~~p-iIiV~NK 331 (472)
T PRK03003 260 TWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPIS-------EQDQRVLSMVIEAGRA-LVLAFNK 331 (472)
T ss_pred EEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEEC
Confidence 999999999632 2221 1335678999999999999853 4666777777778998 9999999
Q ss_pred ccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 230 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 230 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
||+.. ......+..++...+.... ..+++++||++|.|+.++++
T Consensus 332 ~Dl~~----~~~~~~~~~~i~~~l~~~~-----~~~~~~~SAk~g~gv~~lf~ 375 (472)
T PRK03003 332 WDLVD----EDRRYYLEREIDRELAQVP-----WAPRVNISAKTGRAVDKLVP 375 (472)
T ss_pred cccCC----hhHHHHHHHHHHHhcccCC-----CCCEEEEECCCCCCHHHHHH
Confidence 99942 1222334444444444333 25899999999999999765
No 106
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=1.7e-17 Score=176.62 Aligned_cols=149 Identities=24% Similarity=0.275 Sum_probs=109.2
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+|+|++|+|||||+++|+.....+ .....|+|.+.....+.+.+
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~------------------------------v~~~~gvT~d~~~~~~~~~~ 85 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAV------------------------------VEDVPGVTRDRVSYDAEWNG 85 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCccc------------------------------ccCCCCCCEeeEEEEEEECC
Confidence 345789999999999999999995432211 11237888888888888899
Q ss_pred eEEEEEeCCCCcc--------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 160 TRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 160 ~~i~liDtPGh~~--------f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
..+.|+||||++. |...+..++..||++|+|+|++.+.. ....+.+..++..++| +|+|+||+|
T Consensus 86 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s-------~~~~~i~~~l~~~~~p-iilV~NK~D 157 (472)
T PRK03003 86 RRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGAT-------ATDEAVARVLRRSGKP-VILAANKVD 157 (472)
T ss_pred cEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECcc
Confidence 9999999999763 34445567789999999999998843 2455667777778899 999999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+.... . + .. .+...++. ..+++||++|.|+.++++
T Consensus 158 l~~~~--~----~----~~-~~~~~g~~-----~~~~iSA~~g~gi~eL~~ 192 (472)
T PRK03003 158 DERGE--A----D----AA-ALWSLGLG-----EPHPVSALHGRGVGDLLD 192 (472)
T ss_pred CCccc--h----h----hH-HHHhcCCC-----CeEEEEcCCCCCcHHHHH
Confidence 84321 1 0 11 12234443 347999999999999644
No 107
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.74 E-value=1e-17 Score=151.32 Aligned_cols=142 Identities=20% Similarity=0.244 Sum_probs=97.4
Q ss_pred EEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEEEEe
Q 010318 87 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILD 166 (513)
Q Consensus 87 ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 166 (513)
++|++|+|||||+++|...... .....|+|++.....+.+++..+.|+|
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~liD 49 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK-------------------------------VGNWPGVTVEKKEGRFKLGGKEIEIVD 49 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc-------------------------------ccCCCCcccccceEEEeeCCeEEEEEE
Confidence 5899999999999999422100 111267777777777888889999999
Q ss_pred CCCCcchHHH------HHHhh--hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 167 APGHKSYVPN------MISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 167 tPGh~~f~~~------~~~~~--~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
|||+.+|... +...+ ..+|++|+|+|+... .+....+..+...++| +|+++||+|+......
T Consensus 50 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~---------~~~~~~~~~~~~~~~~-~iiv~NK~Dl~~~~~~ 119 (158)
T cd01879 50 LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL---------ERNLYLTLQLLELGLP-VVVALNMIDEAEKRGI 119 (158)
T ss_pred CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc---------hhHHHHHHHHHHcCCC-EEEEEehhhhcccccc
Confidence 9999876532 22233 489999999999864 2334444556667888 8999999999433211
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
......+...++ .+++++||.+|.|+.++++
T Consensus 120 -------~~~~~~~~~~~~------~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 120 -------KIDLDKLSELLG------VPVVPTSARKGEGIDELKD 150 (158)
T ss_pred -------hhhHHHHHHhhC------CCeEEEEccCCCCHHHHHH
Confidence 111122222222 4799999999999998543
No 108
>PRK00089 era GTPase Era; Reviewed
Probab=99.74 E-value=5.6e-17 Score=162.43 Aligned_cols=154 Identities=20% Similarity=0.209 Sum_probs=101.8
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+...|+++|++|+|||||+|+|++....+... ..+.|.......+..++
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~------------------------------~~~tt~~~i~~i~~~~~ 52 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSP------------------------------KPQTTRHRIRGIVTEDD 52 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCC------------------------------CCCcccccEEEEEEcCC
Confidence 456789999999999999999996433221111 02222222222233456
Q ss_pred eEEEEEeCCCCcch--------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 160 TRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 160 ~~i~liDtPGh~~f--------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
.++.|+||||+.+. ......++..+|++++|+|+..+. .....+.+..+...+.| +++++||+|
T Consensus 53 ~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~-------~~~~~~i~~~l~~~~~p-vilVlNKiD 124 (292)
T PRK00089 53 AQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKI-------GPGDEFILEKLKKVKTP-VILVLNKID 124 (292)
T ss_pred ceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCC-------ChhHHHHHHHHhhcCCC-EEEEEECCc
Confidence 89999999996443 334455678999999999999852 23556666777767888 899999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+.. +........+.+. ...+ ..+++|+||++|.|+.++++
T Consensus 125 l~~---~~~~l~~~~~~l~---~~~~-----~~~i~~iSA~~~~gv~~L~~ 164 (292)
T PRK00089 125 LVK---DKEELLPLLEELS---ELMD-----FAEIVPISALKGDNVDELLD 164 (292)
T ss_pred CCC---CHHHHHHHHHHHH---hhCC-----CCeEEEecCCCCCCHHHHHH
Confidence 931 1222333333332 2222 24799999999999998643
No 109
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.73 E-value=3.9e-17 Score=181.85 Aligned_cols=151 Identities=25% Similarity=0.281 Sum_probs=112.3
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
.....++|+|+|++|+|||||+|+|++....+. +...|+|.+......++
T Consensus 271 ~~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv------------------------------~~~pGvT~d~~~~~~~~ 320 (712)
T PRK09518 271 GPKAVGVVAIVGRPNVGKSTLVNRILGRREAVV------------------------------EDTPGVTRDRVSYDAEW 320 (712)
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHhCCCceee------------------------------cCCCCeeEEEEEEEEEE
Confidence 345568899999999999999999964322111 12278898888888888
Q ss_pred CCeEEEEEeCCCCcc--------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEee
Q 010318 158 ETTRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 229 (513)
Q Consensus 158 ~~~~i~liDtPGh~~--------f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK 229 (513)
.+..+.|+||||... |...+..++..||++|+|+|+..+.. ....+.+..++..+.| +|+|+||
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~-------~~d~~i~~~Lr~~~~p-vIlV~NK 392 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLT-------STDERIVRMLRRAGKP-VVLAVNK 392 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHhcCCC-EEEEEEC
Confidence 999999999999753 45666677889999999999998743 4566677888888999 9999999
Q ss_pred ccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 230 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 230 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+|+.... . . ... +..+++. ..+|+||++|.|+.++++
T Consensus 393 ~D~~~~~---~---~----~~~-~~~lg~~-----~~~~iSA~~g~GI~eLl~ 429 (712)
T PRK09518 393 IDDQASE---Y---D----AAE-FWKLGLG-----EPYPISAMHGRGVGDLLD 429 (712)
T ss_pred cccccch---h---h----HHH-HHHcCCC-----CeEEEECCCCCCchHHHH
Confidence 9983211 0 1 111 2223443 357999999999998744
No 110
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.72 E-value=6.6e-17 Score=179.37 Aligned_cols=148 Identities=21% Similarity=0.267 Sum_probs=105.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
+.++|+++|++|+|||||+|+|.+.... .....|.|++.....+.++++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~-------------------------------vgn~pGvTve~k~g~~~~~~~ 50 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQR-------------------------------VGNWAGVTVERKEGQFSTTDH 50 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCc-------------------------------cCCCCCceEeeEEEEEEcCce
Confidence 3578999999999999999999321110 112289999988888999999
Q ss_pred EEEEEeCCCCcchHHH--------HHH--h--hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010318 161 RFTILDAPGHKSYVPN--------MIS--G--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~--------~~~--~--~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN 228 (513)
.++++||||+.+|... .+. . ...+|++|+|+|+++.. +.......+..+++| +|+++|
T Consensus 51 ~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~le---------r~l~l~~ql~e~giP-vIvVlN 120 (772)
T PRK09554 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLE---------RNLYLTLQLLELGIP-CIVALN 120 (772)
T ss_pred EEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcch---------hhHHHHHHHHHcCCC-EEEEEE
Confidence 9999999999877421 111 1 23799999999998752 334455667778999 899999
Q ss_pred eccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 229 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+|+.... .+.. .+..+-+.+| +|++|+||.+|+|++++.+
T Consensus 121 K~Dl~~~~----~i~i---d~~~L~~~LG------~pVvpiSA~~g~GIdeL~~ 161 (772)
T PRK09554 121 MLDIAEKQ----NIRI---DIDALSARLG------CPVIPLVSTRGRGIEALKL 161 (772)
T ss_pred chhhhhcc----CcHH---HHHHHHHHhC------CCEEEEEeecCCCHHHHHH
Confidence 99984221 1111 2222223333 5899999999999998543
No 111
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.72 E-value=4.9e-17 Score=148.86 Aligned_cols=148 Identities=18% Similarity=0.170 Sum_probs=92.2
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe-EE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT-RF 162 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i 162 (513)
+|+++|++|+|||||+++|......+. ...+.|+......+...+. .+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~-------------------------------~~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIA-------------------------------DYPFTTLVPNLGVVRVDDGRSF 50 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcccc-------------------------------CCCccccCCcceEEEcCCCCeE
Confidence 699999999999999999943211000 0123344333344555565 89
Q ss_pred EEEeCCCCc-------chHHHHHHhhhhcCEEEEEEECCCC-cccccccCCcchHHHHHHHHH-----cCCCeEEEEEee
Q 010318 163 TILDAPGHK-------SYVPNMISGASQADIGVLVISARKG-EFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNK 229 (513)
Q Consensus 163 ~liDtPGh~-------~f~~~~~~~~~~~D~~ilVVda~~g-~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ivviNK 229 (513)
.|+||||+. .+...+.+.+..+|++++|+|++.+ .. + .+....+..+.. .++| +++|+||
T Consensus 51 ~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~---~---~~~~~~~~~l~~~~~~~~~~p-~ivv~NK 123 (170)
T cd01898 51 VVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDP---V---EDYKTIRNELELYNPELLEKP-RIVVLNK 123 (170)
T ss_pred EEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCH---H---HHHHHHHHHHHHhCccccccc-cEEEEEc
Confidence 999999963 2345555667789999999999875 11 0 122222233332 2567 8899999
Q ss_pred ccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 230 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 230 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+|+.... ... +.+..++... ...+++++||++|.|+.+++
T Consensus 124 ~Dl~~~~----~~~---~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~ 163 (170)
T cd01898 124 IDLLDEE----ELF---ELLKELLKEL-----WGKPVFPISALTGEGLDELL 163 (170)
T ss_pred hhcCCch----hhH---HHHHHHHhhC-----CCCCEEEEecCCCCCHHHHH
Confidence 9984321 111 1222223221 13579999999999999864
No 112
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.72 E-value=3.8e-17 Score=133.85 Aligned_cols=87 Identities=26% Similarity=0.495 Sum_probs=82.7
Q ss_pred CCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCccccee
Q 010318 309 NGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILS 386 (513)
Q Consensus 309 ~~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~ 386 (513)
++||||+|+++| ++.|++++|+|.+|+|+.||+++++|++..++|++|++++.++++|.||+.|+|+|++++..++++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~~~~~~~a~aG~~v~i~l~~i~~~~v~~ 81 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMHHEPLEEALPGDNVGFNVKNVSKKDIKR 81 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEECCcCcCEECCCCEEEEEECCCCHHHcCC
Confidence 579999999999 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEccCCC
Q 010318 387 GFVLSSVAK 395 (513)
Q Consensus 387 G~vl~~~~~ 395 (513)
||+||++++
T Consensus 82 G~vl~~~~~ 90 (91)
T cd03693 82 GDVAGDSKN 90 (91)
T ss_pred cCEEccCCC
Confidence 999999764
No 113
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.72 E-value=5e-17 Score=148.42 Aligned_cols=152 Identities=17% Similarity=0.224 Sum_probs=98.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC-
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 159 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~- 159 (513)
..++|+++|++|+|||||+++|+. +.... +....++.+.....+..++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 50 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKS--GTFSE-----------------------------RQGNTIGVDFTMKTLEIEGK 50 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhh--CCCcc-----------------------------cCCCccceEEEEEEEEECCE
Confidence 358999999999999999999843 22110 0001122233333445555
Q ss_pred -eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCC
Q 010318 160 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 -~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~ 235 (513)
..+.|+||||+++|...+...++.+|++|+|+|++.... |+ .....+..+.. .++| +|+|+||+|+...
T Consensus 51 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~ivv~nK~Dl~~~ 123 (165)
T cd01864 51 RVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSS---FE---SVPHWIEEVEKYGASNVV-LLLIGNKCDLEEQ 123 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCCCCCc-EEEEEECcccccc
Confidence 578999999999998888888899999999999987532 11 12223333332 3677 8999999998422
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
. +. ..+....+.+..+. ..++++||++|.|+.+++
T Consensus 124 ~--~~----~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~~ 158 (165)
T cd01864 124 R--EV----LFEEACTLAEKNGM-----LAVLETSAKESQNVEEAF 158 (165)
T ss_pred c--cc----CHHHHHHHHHHcCC-----cEEEEEECCCCCCHHHHH
Confidence 1 11 11122233333332 368999999999999853
No 114
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=9.6e-17 Score=169.73 Aligned_cols=146 Identities=21% Similarity=0.230 Sum_probs=107.0
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
++|+++|++|+|||||+++|+.....+. ....|+|.+.....+.+.+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v------------------------------~~~~~~t~d~~~~~~~~~~~~~ 51 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIV------------------------------ADTPGVTRDRIYGEAEWLGREF 51 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee------------------------------CCCCCCcccceEEEEEECCcEE
Confidence 5799999999999999999954322111 1126778777777788889999
Q ss_pred EEEeCCCCcc----h----HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCC
Q 010318 163 TILDAPGHKS----Y----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 163 ~liDtPGh~~----f----~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~ 234 (513)
.|+||||+.+ + ......++..+|++|+|+|+..+.. ....+.+.+++..+.| +|+|+||+|...
T Consensus 52 ~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~-------~~~~~~~~~l~~~~~p-iilv~NK~D~~~ 123 (435)
T PRK00093 52 ILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLT-------PADEEIAKILRKSNKP-VILVVNKVDGPD 123 (435)
T ss_pred EEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCc-EEEEEECccCcc
Confidence 9999999987 2 3334556789999999999998742 3556677788888999 999999999732
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. ... +.. +..+|+. .++++||++|.|+.++++
T Consensus 124 ~---~~~-------~~~-~~~lg~~-----~~~~iSa~~g~gv~~l~~ 155 (435)
T PRK00093 124 E---EAD-------AYE-FYSLGLG-----EPYPISAEHGRGIGDLLD 155 (435)
T ss_pred c---hhh-------HHH-HHhcCCC-----CCEEEEeeCCCCHHHHHH
Confidence 1 111 111 1234443 479999999999998643
No 115
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.71 E-value=7.7e-17 Score=179.44 Aligned_cols=155 Identities=18% Similarity=0.209 Sum_probs=111.6
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
..++|+++|++|+|||||+|+|++....+.. ...|.|.+.....+.+++.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~------------------------------~~~gtT~d~~~~~~~~~~~ 498 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVN------------------------------DLAGTTRDPVDEIVEIDGE 498 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccC------------------------------CCCCCCcCcceeEEEECCC
Confidence 4589999999999999999999644321111 1267777776677788899
Q ss_pred EEEEEeCCCCcc---------hHHH--HHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEee
Q 010318 161 RFTILDAPGHKS---------YVPN--MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 229 (513)
Q Consensus 161 ~i~liDtPGh~~---------f~~~--~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK 229 (513)
.+.|+||||+.+ |... ...++..+|++|+|+|++.+.. .|....+..+...++| +|+|+||
T Consensus 499 ~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s-------~~~~~i~~~~~~~~~p-iIiV~NK 570 (712)
T PRK09518 499 DWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPIS-------EQDLKVMSMAVDAGRA-LVLVFNK 570 (712)
T ss_pred EEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEEc
Confidence 999999999642 2222 2345678999999999999853 4677777777778999 9999999
Q ss_pred ccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 230 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 230 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
||+.. ....+.+...+...+.... ..+++++||++|.|+.++++
T Consensus 571 ~DL~~----~~~~~~~~~~~~~~l~~~~-----~~~ii~iSAktg~gv~~L~~ 614 (712)
T PRK09518 571 WDLMD----EFRRQRLERLWKTEFDRVT-----WARRVNLSAKTGWHTNRLAP 614 (712)
T ss_pred hhcCC----hhHHHHHHHHHHHhccCCC-----CCCEEEEECCCCCCHHHHHH
Confidence 99942 1223334444443333222 35789999999999999765
No 116
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.71 E-value=1.5e-16 Score=143.16 Aligned_cols=139 Identities=19% Similarity=0.247 Sum_probs=97.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
.+|+++|++|+|||||+++|........ ....+.|.+.....+...+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 51 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIV------------------------------SDIAGTTRDVIEESIDIGGIPV 51 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEec------------------------------cCCCCCccceEEEEEEeCCEEE
Confidence 4799999999999999999953221100 0125666666666777788899
Q ss_pred EEEeCCCCcchHH--------HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeeccCC
Q 010318 163 TILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMDDH 233 (513)
Q Consensus 163 ~liDtPGh~~f~~--------~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~D~~ 233 (513)
+++||||+.++.. .+...+..+|++++|+|+... .+........ ..+.| +++++||+|+.
T Consensus 52 ~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~~~~~~~~~~~~~~~~-vi~v~nK~D~~ 120 (157)
T cd04164 52 RLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRG----------LDEEDLEILELPADKP-IIVVLNKSDLL 120 (157)
T ss_pred EEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCC----------CCHHHHHHHHhhcCCC-EEEEEEchhcC
Confidence 9999999877632 244556799999999999975 3333444444 45677 99999999994
Q ss_pred CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
... .. ... ....+++++||++|.|+.++.
T Consensus 121 ~~~----~~---------~~~------~~~~~~~~~Sa~~~~~v~~l~ 149 (157)
T cd04164 121 PDS----EL---------LSL------LAGKPIIAISAKTGEGLDELK 149 (157)
T ss_pred Ccc----cc---------ccc------cCCCceEEEECCCCCCHHHHH
Confidence 321 10 011 124589999999999999854
No 117
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.70 E-value=7.3e-17 Score=148.70 Aligned_cols=151 Identities=20% Similarity=0.255 Sum_probs=97.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
..++|+++|++++|||||+++|.+. .... .....|. ....+..++.
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~--~~~~----------------------------~~~t~g~----~~~~~~~~~~ 58 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE--DIDT----------------------------ISPTLGF----QIKTLEYEGY 58 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--CCCC----------------------------cCCcccc----ceEEEEECCE
Confidence 4578999999999999999999532 0000 0001222 2233445678
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH----HHcCCCeEEEEEeeccCCCCC
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~----~~~~ip~~ivviNK~D~~~~~ 236 (513)
.+.++||||++.|...+...++.+|++++|+|+..... |. .....+..+ ...++| +++++||+|+....
T Consensus 59 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~ 131 (173)
T cd04154 59 KLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLR---LD---DCKRELKELLQEERLAGAT-LLILANKQDLPGAL 131 (173)
T ss_pred EEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHhChhhcCCC-EEEEEECcccccCC
Confidence 99999999999988777777889999999999987521 10 122222222 224677 99999999984321
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.. +++...++..... ...++++++||++|.|+.+++
T Consensus 132 -~~-------~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~ 167 (173)
T cd04154 132 -SE-------EEIREALELDKIS-SHHWRIQPCSAVTGEGLLQGI 167 (173)
T ss_pred -CH-------HHHHHHhCccccC-CCceEEEeccCCCCcCHHHHH
Confidence 11 1222223221111 125689999999999999853
No 118
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.70 E-value=2e-16 Score=144.08 Aligned_cols=149 Identities=17% Similarity=0.212 Sum_probs=96.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
++|+++|++++|||||+++|+.. ..... .....+.++......+......+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMD--GYEPQ---------------------------QLSTYALTLYKHNAKFEGKTILV 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC--CCCCC---------------------------cCCceeeEEEEEEEEECCEEEEE
Confidence 47999999999999999998532 11100 00011222222222233334678
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCCCchHH
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKE 240 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~~~~~~ 240 (513)
.|+||||++.|...+...++.+|++|+|+|++++.. ++ ...+.+..++.. ++| +++++||+|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~p-~ivv~nK~Dl~~~----- 119 (161)
T cd04124 52 DFWDTAGQERFQTMHASYYHKAHACILVFDVTRKIT---YK---NLSKWYEELREYRPEIP-CIVVANKIDLDPS----- 119 (161)
T ss_pred EEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCc-EEEEEECccCchh-----
Confidence 899999999999888888999999999999987532 11 223344444443 678 8999999998211
Q ss_pred HHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 241 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. ..+...+.... .++++++||++|.|+.++++
T Consensus 120 ~----~~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 151 (161)
T cd04124 120 V----TQKKFNFAEKH------NLPLYYVSAADGTNVVKLFQ 151 (161)
T ss_pred H----HHHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 1 11112222222 35899999999999998644
No 119
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.70 E-value=1.2e-16 Score=145.00 Aligned_cols=150 Identities=21% Similarity=0.199 Sum_probs=95.0
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
+|+++|.+++|||||+++|......... .....|.++ ..+...+..+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~----------------------------~~~t~g~~~----~~~~~~~~~~~ 48 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI----------------------------IVPTVGFNV----ESFEKGNLSFT 48 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce----------------------------ecCccccce----EEEEECCEEEE
Confidence 5899999999999999998432100000 000122222 23456788999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH------HcCCCeEEEEEeeccCCCCCc
Q 010318 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK------TLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~------~~~ip~~ivviNK~D~~~~~~ 237 (513)
|+||||+.+|...+...+..+|++|+|+|+++... + ......+..+. ..++| +++++||+|+....
T Consensus 49 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~~- 120 (162)
T cd04157 49 AFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLR---L---VVVKDELELLLNHPDIKHRRVP-ILFFANKMDLPDAL- 120 (162)
T ss_pred EEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHH---H---HHHHHHHHHHHcCcccccCCCC-EEEEEeCccccCCC-
Confidence 99999999999888888899999999999987521 1 01222222221 13688 99999999984322
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.. .++...+. +... . ...++++++||++|.|+++++
T Consensus 121 ~~---~~~~~~l~--~~~~--~-~~~~~~~~~Sa~~g~gv~~~~ 156 (162)
T cd04157 121 TA---VKITQLLG--LENI--K-DKPWHIFASNALTGEGLDEGV 156 (162)
T ss_pred CH---HHHHHHhC--Cccc--c-CceEEEEEeeCCCCCchHHHH
Confidence 11 12221111 0111 0 113578999999999999854
No 120
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.70 E-value=7.7e-17 Score=144.25 Aligned_cols=152 Identities=20% Similarity=0.231 Sum_probs=94.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--e
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~ 160 (513)
++|+++|++|+|||||+++|+... . ..+..++++.+.....+..++ +
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-F------------------------------ITEYKPGTTRNYVTTVIEEDGKTY 50 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-C------------------------------cCcCCCCceeeeeEEEEEECCEEE
Confidence 689999999999999999995322 1 112235666666666566667 7
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHH
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 240 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~ 240 (513)
.+.++|+||+.+|..........++.++.++|....+.................+.. +.| +++++||+|+. .+.
T Consensus 51 ~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p-~ivv~nK~D~~--~~~-- 124 (161)
T TIGR00231 51 KFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVP-IILVGNKIDLR--DAK-- 124 (161)
T ss_pred EEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCc-EEEEEEcccCC--cch--
Confidence 899999999999955544444455555555554332111000000122222232322 778 89999999993 221
Q ss_pred HHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 241 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
........+...+. .+++++||.+|.|+.++
T Consensus 125 ----~~~~~~~~~~~~~~-----~~~~~~sa~~~~gv~~~ 155 (161)
T TIGR00231 125 ----LKTHVAFLFAKLNG-----EPIIPLSAETGKNIDSA 155 (161)
T ss_pred ----hhHHHHHHHhhccC-----CceEEeecCCCCCHHHH
Confidence 33334444444443 47999999999999875
No 121
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.70 E-value=9.4e-17 Score=149.52 Aligned_cols=159 Identities=19% Similarity=0.235 Sum_probs=95.6
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEE-EeCCe
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF-ETETT 160 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~-~~~~~ 160 (513)
.++|+++|++|+|||||++++++.... . .....|.+........ ...+.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~----------------------------~~~t~~~~~~~~~~~~~~~~~~ 52 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--N----------------------------TVPTKGFNTEKIKVSLGNSKGI 52 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--C----------------------------cCCccccceeEEEeeccCCCce
Confidence 578999999999999999999532110 0 0000222221111111 22457
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccC-CcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEK-GGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~-~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
.+.|+||||+++|...+...++.+|++|+|+|++.... ++. .....+........+.| +++++||+|+... ...
T Consensus 53 ~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~---~~~~~~~~~~i~~~~~~~~~p-~iiv~NK~D~~~~-~~~ 127 (183)
T cd04152 53 TFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVER---MEEAKTELHKITRFSENQGVP-VLVLANKQDLPNA-LSV 127 (183)
T ss_pred EEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHH---HHHHHHHHHHHHhhhhcCCCc-EEEEEECcCcccc-CCH
Confidence 89999999999998877777889999999999987521 000 00011122222335788 8999999998421 122
Q ss_pred HHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+.. ..++....+.....++++++||++|.|+.+++.
T Consensus 128 ~~~-------~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 163 (183)
T cd04152 128 SEV-------EKLLALHELSASTPWHVQPACAIIGEGLQEGLE 163 (183)
T ss_pred HHH-------HHHhCccccCCCCceEEEEeecccCCCHHHHHH
Confidence 222 111111111101135789999999999998755
No 122
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.70 E-value=1.5e-16 Score=144.63 Aligned_cols=150 Identities=17% Similarity=0.120 Sum_probs=94.7
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 159 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-- 159 (513)
..+|+++|.+|+|||||++++++... ... . ...+.+.-...+..++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~------------------------~------~~t~~~~~~~~~~~~~~~ 49 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTD------------------------Y------DPTIEDSYTKQCEIDGQW 49 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--Ccc------------------------c------CCCccceEEEEEEECCEE
Confidence 47899999999999999999854221 100 0 0000011111222333
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 235 (513)
..+.++||||+++|...+...++.+|++++|+|+++... |+ .....+..+.. .++| +++++||+|+...
T Consensus 50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iiiv~NK~Dl~~~ 122 (164)
T cd04145 50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGS---FE---EVDKFHTQILRVKDRDEFP-MILVGNKADLEHQ 122 (164)
T ss_pred EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCCC-EEEEeeCcccccc
Confidence 578899999999998888888899999999999987521 11 11222222222 3678 8999999998422
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. .. ..++...+++..+ ++++++||++|.|+.++++
T Consensus 123 ~--~~----~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 157 (164)
T cd04145 123 R--KV----SREEGQELARKLK------IPYIETSAKDRLNVDKAFH 157 (164)
T ss_pred c--ee----cHHHHHHHHHHcC------CcEEEeeCCCCCCHHHHHH
Confidence 1 00 1112233334333 4799999999999998643
No 123
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.70 E-value=9.3e-17 Score=145.59 Aligned_cols=148 Identities=22% Similarity=0.305 Sum_probs=94.4
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
+|+++|++++|||||+++|.. +.... . . . |+......+...+..+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~--~~~~~-------------------------~---~--~--t~~~~~~~~~~~~~~~~ 46 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQL--GEVVT-------------------------T---I--P--TIGFNVETVTYKNLKFQ 46 (158)
T ss_pred CEEEECCCCCCHHHHHHHHcc--CCCcC-------------------------c---C--C--ccCcCeEEEEECCEEEE
Confidence 489999999999999999832 11000 0 0 0 11111223455678999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHH-HHHH---cCCCeEEEEEeeccCCCCCchH
Q 010318 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKT---LGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~-~~~~---~~ip~~ivviNK~D~~~~~~~~ 239 (513)
|+||||+.+|...+...+..+|++|+|+|++.... + ....+.+. +++. .+.| +++++||+|+.... ..
T Consensus 47 i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~-~~ 118 (158)
T cd04151 47 VWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDR---L---GTAKEELHAMLEEEELKGAV-LLVFANKQDMPGAL-SE 118 (158)
T ss_pred EEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCc-EEEEEeCCCCCCCC-CH
Confidence 99999999998888888899999999999986410 0 11223232 2222 3678 99999999995332 11
Q ss_pred HHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.++... +....+. ....+++++||++|.|+.+++
T Consensus 119 ---~~i~~~----~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~ 152 (158)
T cd04151 119 ---AEISEK----LGLSELK-DRTWSIFKTSAIKGEGLDEGM 152 (158)
T ss_pred ---HHHHHH----hCccccC-CCcEEEEEeeccCCCCHHHHH
Confidence 122222 1111111 123579999999999999864
No 124
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.70 E-value=2.4e-16 Score=144.12 Aligned_cols=150 Identities=18% Similarity=0.183 Sum_probs=92.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
++|+++|++|+|||||+++|...... .....+.|.......+.+.+..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~ 49 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-------------------------------VAPYPFTTKSLFVGHFDYKYLRW 49 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-------------------------------cCCCCCcccceeEEEEccCceEE
Confidence 57999999999999999999532110 00113445544444556677899
Q ss_pred EEEeCCCCcch-------H-HHHHHh-hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeecc
Q 010318 163 TILDAPGHKSY-------V-PNMISG-ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMD 231 (513)
Q Consensus 163 ~liDtPGh~~f-------~-~~~~~~-~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D 231 (513)
+|+||||+.+. . ...+.. ...+|++|+|+|+..... +.. ....+.+..++.. +.| +|+|+||+|
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~---~~~-~~~~~~~~~l~~~~~~~p-vilv~NK~D 124 (168)
T cd01897 50 QVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCG---YSL-EEQLSLFEEIKPLFKNKP-VIVVLNKID 124 (168)
T ss_pred EEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccc---cch-HHHHHHHHHHHhhcCcCC-eEEEEEccc
Confidence 99999998421 1 112222 234799999999986421 000 0122334444444 677 999999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+... ..... ...+.+. ...+++++||++|.|+.++++
T Consensus 125 l~~~----~~~~~----~~~~~~~------~~~~~~~~Sa~~~~gi~~l~~ 161 (168)
T cd01897 125 LLTF----EDLSE----IEEEEEL------EGEEVLKISTLTEEGVDEVKN 161 (168)
T ss_pred cCch----hhHHH----HHHhhhh------ccCceEEEEecccCCHHHHHH
Confidence 8422 11211 2222221 135899999999999998643
No 125
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.70 E-value=3.4e-16 Score=142.26 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=97.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
.+|+++|++++|||||+++|++..- .. ......|.+.......+......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~t~~~~~~~~~v~~~~~~~~~ 52 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEF--SE---------------------------NQESTIGAAFLTQTVNLDDTTVKF 52 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CC---------------------------CCCCccceeEEEEEEEECCEEEEE
Confidence 6899999999999999999953221 00 001112332323233344445678
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCCchH
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~~~~ 239 (513)
.++|+||+++|.......++.+|++|+|+|+++... + .+....+..+... ++| +++++||+|+....+
T Consensus 53 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~~-- 123 (163)
T cd01860 53 EIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEES---F---EKAKSWVKELQRNASPNII-IALVGNKADLESKRQ-- 123 (163)
T ss_pred EEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCe-EEEEEECccccccCc--
Confidence 999999999998888777889999999999986521 1 1333444444443 466 899999999842211
Q ss_pred HHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
... +++..+....+ ++++++||++|.|+.+++
T Consensus 124 ~~~----~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 124 VST----EEAQEYADENG------LLFFETSAKTGENVNELF 155 (163)
T ss_pred CCH----HHHHHHHHHcC------CEEEEEECCCCCCHHHHH
Confidence 011 12222333332 479999999999999863
No 126
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.69 E-value=3.1e-16 Score=142.25 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=99.3
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--eE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 161 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~ 161 (513)
+|+++|++++|||||+++|+...-. .....+.+.+.....+..++ ..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 50 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFD-------------------------------NQYQATIGIDFLSKTMYLEDKTVR 50 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-------------------------------ccCCCceeeeEEEEEEEECCEEEE
Confidence 7999999999999999999532211 11224555555555555554 46
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-HHcC--CCeEEEEEeeccCCCCCch
Q 010318 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLG--VTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 162 i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~-~~~~--ip~~ivviNK~D~~~~~~~ 238 (513)
+.|+||||+.+|.......++.+|++|+|+|++.... |+ +....+..+ ...+ +| +++++||+|+... .
T Consensus 51 l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-iilv~nK~D~~~~--~ 121 (161)
T cd01861 51 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQS---FD---NTDKWIDDVRDERGNDVI-IVLVGNKTDLSDK--R 121 (161)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCE-EEEEEEChhcccc--C
Confidence 8999999999998888888899999999999987532 11 222333332 2333 77 9999999998321 1
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.. ..++...+.+.. +++++++||++|.|+.+++
T Consensus 122 ~~----~~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 122 QV----STEEGEKKAKEL------NAMFIETSAKAGHNVKELF 154 (161)
T ss_pred cc----CHHHHHHHHHHh------CCEEEEEeCCCCCCHHHHH
Confidence 11 112222222332 3579999999999999864
No 127
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=99.69 E-value=1.5e-16 Score=127.66 Aligned_cols=82 Identities=71% Similarity=1.149 Sum_probs=79.1
Q ss_pred CceEEEEEEEccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEE
Q 010318 311 PFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL 390 (513)
Q Consensus 311 ~~~~~i~~~~~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl 390 (513)
||+|+|+++|+..|++++|+|.+|+|++||++.++|++..++|++|++++.++++|.|||.|+++|++++..++++||+|
T Consensus 1 plr~~I~~v~~~~g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~i~~~~v~~G~vl 80 (82)
T cd04089 1 PLRLPIIDKYKDMGTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNEDVEVRYARPGENVRLRLKGIEEEDISPGFVL 80 (82)
T ss_pred CeEEEEEeEEEcCCEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEECCEECCEECCCCEEEEEecCCCHHHCCCCCEE
Confidence 79999999998779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 010318 391 SS 392 (513)
Q Consensus 391 ~~ 392 (513)
++
T Consensus 81 ~~ 82 (82)
T cd04089 81 CS 82 (82)
T ss_pred eC
Confidence 74
No 128
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.69 E-value=1.2e-16 Score=145.27 Aligned_cols=134 Identities=19% Similarity=0.229 Sum_probs=88.6
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
+|+++|++|+|||||+++|.+... . ...|.. +.+... .
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--------------------------------~---~~~~~~-----v~~~~~--~ 40 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--------------------------------L---ARKTQA-----VEFNDK--G 40 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--------------------------------c---CccceE-----EEECCC--C
Confidence 699999999999999999832110 0 001111 111111 2
Q ss_pred EEeCCCC----cchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010318 164 ILDAPGH----KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 164 liDtPGh----~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
+|||||. .++.+.++.++..+|++|+|+|++.+.. ......+.+ ..+.| +++++||+|+...+
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s-------~~~~~~~~~--~~~~~-ii~v~nK~Dl~~~~--- 107 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPES-------RLPAGLLDI--GVSKR-QIAVISKTDMPDAD--- 107 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccc-------ccCHHHHhc--cCCCC-eEEEEEccccCccc---
Confidence 6999995 4677777788899999999999998732 122222221 24667 89999999984322
Q ss_pred HHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. ..+..+++..++. .|++++||++|.|+.++++
T Consensus 108 --~----~~~~~~~~~~~~~----~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 108 --V----AATRKLLLETGFE----EPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred --H----HHHHHHHHHcCCC----CCEEEEECCCccCHHHHHH
Confidence 1 2233445555542 5899999999999998644
No 129
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.69 E-value=3.3e-16 Score=142.25 Aligned_cols=149 Identities=21% Similarity=0.249 Sum_probs=96.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--e
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~ 160 (513)
++|+++|++|+|||||+++|+...- . ....+.++.+.....+...+ .
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 49 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF--S-----------------------------EQYKSTIGVDFKTKTIEVDGKRV 49 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--C-----------------------------CCCCCceeeEEEEEEEEECCEEE
Confidence 4799999999999999999943211 0 01112233333333444444 5
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCC-C
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV-N 236 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~-~ 236 (513)
.+.|+|+||+..|.......++.+|++|+|+|+.+... ++ .....+..+.. .++| +++++||+|+... .
T Consensus 50 ~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~l~~~~~~~~~~~p-ivvv~nK~D~~~~~~ 122 (164)
T smart00175 50 KLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRES---FE---NLKNWLKELREYADPNVV-IMLVGNKSDLEDQRQ 122 (164)
T ss_pred EEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEEchhcccccC
Confidence 78999999999999888888899999999999987521 11 11112222222 3577 9999999998431 1
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
++.+ ....+.+..+ ++++++||.+|.|+.++++
T Consensus 123 ~~~~-------~~~~~~~~~~------~~~~e~Sa~~~~~i~~l~~ 155 (164)
T smart00175 123 VSRE-------EAEAFAEEHG------LPFFETSAKTNTNVEEAFE 155 (164)
T ss_pred CCHH-------HHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 1211 1222333333 4799999999999998643
No 130
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.68 E-value=3.4e-16 Score=141.70 Aligned_cols=148 Identities=17% Similarity=0.165 Sum_probs=92.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--e
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~ 160 (513)
.+|+++|.+|+|||||+++|+.. ...... .+. .+.+ -...+..++ .
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~--~~~~~~------------------------~~t---~~~~---~~~~~~~~~~~~ 49 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQN--HFVDEY------------------------DPT---IEDS---YRKQVVIDGETC 49 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC--CCcCCc------------------------CCc---chhe---EEEEEEECCEEE
Confidence 57999999999999999999532 111000 000 0101 011222333 4
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH-HHHH---HcCCCeEEEEEeeccCCCCC
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAK---TLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l-~~~~---~~~ip~~ivviNK~D~~~~~ 236 (513)
.+.++||||+++|...+...++.+|++++|+|.++... |+ .....+ .+.+ ..++| ++++.||+|+....
T Consensus 50 ~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~ 122 (162)
T cd04138 50 LLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKS---FE---DIHTYREQIKRVKDSDDVP-MVLVGNKCDLAART 122 (162)
T ss_pred EEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECcccccce
Confidence 57899999999999888888899999999999886421 11 111112 2222 23678 89999999984321
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. ...++..+.+..+ ++++++||++|.|+.++++
T Consensus 123 ~-------~~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 155 (162)
T cd04138 123 V-------SSRQGQDLAKSYG------IPYIETSAKTRQGVEEAFY 155 (162)
T ss_pred e-------cHHHHHHHHHHhC------CeEEEecCCCCCCHHHHHH
Confidence 1 1122223333332 4799999999999998643
No 131
>PRK04213 GTP-binding protein; Provisional
Probab=99.68 E-value=5e-16 Score=146.70 Aligned_cols=156 Identities=24% Similarity=0.282 Sum_probs=94.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
+.++|+++|++|+|||||+++|.+..- .....+|.|.+... +...
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-------------------------------~~~~~~~~t~~~~~--~~~~-- 52 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-------------------------------RVGKRPGVTRKPNH--YDWG-- 52 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-------------------------------ccCCCCceeeCceE--Eeec--
Confidence 457899999999999999999942210 01122566665433 3333
Q ss_pred EEEEEeCCCC-----------cchHHHH---H-HhhhhcCEEEEEEECCCCcc-ccccc---CCcchHHHHHHHHHcCCC
Q 010318 161 RFTILDAPGH-----------KSYVPNM---I-SGASQADIGVLVISARKGEF-ETGFE---KGGQTREHVMLAKTLGVT 221 (513)
Q Consensus 161 ~i~liDtPGh-----------~~f~~~~---~-~~~~~~D~~ilVVda~~g~~-e~~~~---~~~qt~e~l~~~~~~~ip 221 (513)
.+.|+||||+ +.|...+ . .++..+|++++|+|+....- ...+. ...++.+.+..+...++|
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p 132 (201)
T PRK04213 53 DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIP 132 (201)
T ss_pred ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCC
Confidence 6899999994 3343322 1 24556899999999865210 00000 012345667777778999
Q ss_pred eEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCc--c-cCCeeEEEeecccccccccccc
Q 010318 222 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN--V-KKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 222 ~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~--~-~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+++++||+|+. +......+++.+ .+++. . ....+++++||++| |++++++
T Consensus 133 -~iiv~NK~Dl~--~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~ 185 (201)
T PRK04213 133 -PIVAVNKMDKI--KNRDEVLDEIAE-------RLGLYPPWRQWQDIIAPISAKKG-GIEELKE 185 (201)
T ss_pred -eEEEEECcccc--CcHHHHHHHHHH-------HhcCCccccccCCcEEEEecccC-CHHHHHH
Confidence 89999999983 222122222222 22221 0 00136899999999 9998643
No 132
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.68 E-value=2e-16 Score=160.83 Aligned_cols=147 Identities=17% Similarity=0.182 Sum_probs=111.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
..-++++|+|.||+|||||+|+|+.....|..+- .|.|.|+-...+..++
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI------------------------------~GTTRDviee~i~i~G 264 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDI------------------------------AGTTRDVIEEDINLNG 264 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCC------------------------------CCCccceEEEEEEECC
Confidence 3568999999999999999999988777665443 8999999999999999
Q ss_pred eEEEEEeCCCCcch--------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 160 TRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 160 ~~i~liDtPGh~~f--------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
+.+.++||+|.+.- +......+..||.+++|+|++.+.. .+....+. +...+.| +++++||+|
T Consensus 265 ~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~-------~~d~~~~~-~~~~~~~-~i~v~NK~D 335 (454)
T COG0486 265 IPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLD-------KEDLALIE-LLPKKKP-IIVVLNKAD 335 (454)
T ss_pred EEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCc-------hhhHHHHH-hcccCCC-EEEEEechh
Confidence 99999999996543 4445556789999999999998632 34445544 3445567 899999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+.... .. ..+ +. ....+++++|+++|+|++.|.+
T Consensus 336 L~~~~-~~-------~~~-----~~----~~~~~~i~iSa~t~~Gl~~L~~ 369 (454)
T COG0486 336 LVSKI-EL-------ESE-----KL----ANGDAIISISAKTGEGLDALRE 369 (454)
T ss_pred ccccc-cc-------chh-----hc----cCCCceEEEEecCccCHHHHHH
Confidence 94332 10 000 01 1134799999999999998754
No 133
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.68 E-value=8.3e-16 Score=139.18 Aligned_cols=152 Identities=21% Similarity=0.216 Sum_probs=98.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
...+|+++|.+|+|||||+++|+...-.... .....+.......+...+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 51 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVS------------------------------PKPQTTRNRIRGIYTDDDA 51 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEecc------------------------------CCCCceeceEEEEEEcCCe
Confidence 3578999999999999999999532211000 0012222222233444568
Q ss_pred EEEEEeCCCCcch--------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 161 RFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 161 ~i~liDtPGh~~f--------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
.+.|+||||+... .......+..+|++++|+|+.+... ......+..+...+.| +++++||+|+
T Consensus 52 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~iiv~nK~Dl 123 (168)
T cd04163 52 QIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIG-------EGDEFILELLKKSKTP-VILVLNKIDL 123 (168)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccC-------chHHHHHHHHHHhCCC-EEEEEEchhc
Confidence 8999999997543 2334455788999999999998621 3455566667777888 8999999999
Q ss_pred CCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.. ......+....+. ...+ ..+++++|++++.|+.++.
T Consensus 124 ~~---~~~~~~~~~~~~~---~~~~-----~~~~~~~s~~~~~~~~~l~ 161 (168)
T cd04163 124 VK---DKEDLLPLLEKLK---ELGP-----FAEIFPISALKGENVDELL 161 (168)
T ss_pred cc---cHHHHHHHHHHHH---hccC-----CCceEEEEeccCCChHHHH
Confidence 32 1222233333222 2221 2479999999999998853
No 134
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.68 E-value=1.8e-16 Score=141.03 Aligned_cols=132 Identities=23% Similarity=0.253 Sum_probs=84.4
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
+|+++|++|+|||||+++|....- ....|+. +.+.. .
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~-----------------------------------~~~~t~~-----~~~~~---~ 38 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI-----------------------------------LYKKTQA-----VEYND---G 38 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc-----------------------------------cccccee-----EEEcC---e
Confidence 699999999999999999842110 0011211 12222 6
Q ss_pred EEeCCCCc----chHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010318 164 ILDAPGHK----SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 164 liDtPGh~----~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
++||||+. .+.+.+...++.+|++|+|+|++++.. .+..+. ....+.| +|+++||+|+... .
T Consensus 39 ~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s-------~~~~~~---~~~~~~p-~ilv~NK~Dl~~~--~- 104 (142)
T TIGR02528 39 AIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPES-------RFPPGF---ASIFVKP-VIGLVTKIDLAEA--D- 104 (142)
T ss_pred eecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCc-------CCChhH---HHhccCC-eEEEEEeeccCCc--c-
Confidence 89999972 445555556789999999999988743 122222 2223457 8899999998321 1
Q ss_pred HHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.. .+++..+++..++ .+++++||++|.|+.+++
T Consensus 105 ~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 105 VD----IERAKELLETAGA-----EPIFEISSVDEQGLEALV 137 (142)
T ss_pred cC----HHHHHHHHHHcCC-----CcEEEEecCCCCCHHHHH
Confidence 11 1223333444433 379999999999998853
No 135
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.68 E-value=9.8e-16 Score=139.01 Aligned_cols=150 Identities=17% Similarity=0.188 Sum_probs=95.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
++|+++|.+++|||||+++|+...-. .. .....+.+.......+......+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFD--PD---------------------------LAATIGVDFKVKTLTVDGKKVKL 51 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC--cc---------------------------cCCcccceEEEEEEEECCEEEEE
Confidence 47999999999999999999532110 00 11113333333222333334678
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCCch
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~~~ 238 (513)
.|+||||+++|.......++.+|++|+|+|++.... |+ .....+..+.. .++| +++++||+|+......
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~-~~iv~nK~D~~~~~~~ 124 (161)
T cd01863 52 AIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDT---FT---NLETWLNELETYSTNNDIV-KMLVGNKIDKENREVT 124 (161)
T ss_pred EEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhCCCCCCc-EEEEEECCcccccccC
Confidence 999999999998887778889999999999887521 11 11222222322 3577 8899999999522211
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.+ +...+.+.. .++++++||++|.|+.+++
T Consensus 125 ~~-------~~~~~~~~~------~~~~~~~Sa~~~~gi~~~~ 154 (161)
T cd01863 125 RE-------EGLKFARKH------NMLFIETSAKTRDGVQQAF 154 (161)
T ss_pred HH-------HHHHHHHHc------CCEEEEEecCCCCCHHHHH
Confidence 11 122223332 3579999999999999863
No 136
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.68 E-value=1.1e-15 Score=139.96 Aligned_cols=146 Identities=16% Similarity=0.222 Sum_probs=94.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--e
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~ 160 (513)
.+|+++|++++|||||+++|+...- .. .....+..+.....+..++ .
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~--~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 49 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF--SN-----------------------------QYKATIGADFLTKEVTVDDKLV 49 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--Cc-----------------------------CcCCccceEEEEEEEEECCEEE
Confidence 4799999999999999999953211 00 0001111122222233443 4
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH-----HHHHHc------CCCeEEEEEee
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-----MLAKTL------GVTKLLLVVNK 229 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l-----~~~~~~------~ip~~ivviNK 229 (513)
.+.|+|+||++.|.......++.+|++|+|+|+.+.. +.+.+ .++... ++| +++++||
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK 118 (172)
T cd01862 50 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPK----------SFESLDSWRDEFLIQASPSDPENFP-FVVLGNK 118 (172)
T ss_pred EEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHH----------HHHHHHHHHHHHHHhcCccCCCCce-EEEEEEC
Confidence 5779999999999988888899999999999998752 22221 112222 678 8999999
Q ss_pred ccCCCCC-chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 230 MDDHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 230 ~D~~~~~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+|+...+ ... +.+..+++..+ .++++++||++|.|+.++++
T Consensus 119 ~Dl~~~~~~~~-------~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 119 IDLEEKRQVST-------KKAQQWCQSNG-----NIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred cccccccccCH-------HHHHHHHHHcC-----CceEEEEECCCCCCHHHHHH
Confidence 9994211 111 22223333333 25899999999999998644
No 137
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.67 E-value=5.9e-16 Score=142.89 Aligned_cols=151 Identities=21% Similarity=0.272 Sum_probs=97.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
+..+|+++|++++|||||+++|.. +.... ...|+......+..++.
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~--~~~~~--------------------------------~~~t~~~~~~~~~~~~~ 59 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLL--GEVVH--------------------------------TSPTIGSNVEEIVYKNI 59 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHcc--CCCCC--------------------------------cCCccccceEEEEECCe
Confidence 357899999999999999999942 21100 11122222334566788
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH-HHHHH---cCCCeEEEEEeeccCCCCC
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT---LGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l-~~~~~---~~ip~~ivviNK~D~~~~~ 236 (513)
.+.|+||||+..|...+...+..+|++|+|+|+++... + ...++.+ .++.. .++| +++++||+|+...
T Consensus 60 ~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~---~---~~~~~~l~~~~~~~~~~~~p-~viv~NK~Dl~~~- 131 (174)
T cd04153 60 RFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRER---L---PLTKEELYKMLAHEDLRKAV-LLVLANKQDLKGA- 131 (174)
T ss_pred EEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhchhhcCCC-EEEEEECCCCCCC-
Confidence 99999999999998888888899999999999987521 1 0112222 22222 2577 9999999998432
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.+. +++.+.+. ..... ...++++++||++|.|+.+++
T Consensus 132 ~~~---~~i~~~l~----~~~~~-~~~~~~~~~SA~~g~gi~e~~ 168 (174)
T cd04153 132 MTP---AEISESLG----LTSIR-DHTWHIQGCCALTGEGLPEGL 168 (174)
T ss_pred CCH---HHHHHHhC----ccccc-CCceEEEecccCCCCCHHHHH
Confidence 121 22222221 00011 124689999999999999854
No 138
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.67 E-value=1.2e-15 Score=143.22 Aligned_cols=153 Identities=18% Similarity=0.201 Sum_probs=100.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
....++|+++|++|+|||||+++|+..... . ......|.|.......+
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~-~----------------------------~~~~~~~~t~~~~~~~~--- 68 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNL-A----------------------------RTSKTPGRTQLINFFEV--- 68 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCc-c----------------------------cccCCCCceeEEEEEec---
Confidence 346689999999999999999999532100 0 00112455655544332
Q ss_pred CeEEEEEeCCCCc----------chHHHHH---HhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEE
Q 010318 159 TTRFTILDAPGHK----------SYVPNMI---SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 225 (513)
Q Consensus 159 ~~~i~liDtPGh~----------~f~~~~~---~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~iv 225 (513)
+..+.|+||||+. .|..... .....++++++|+|+..+.. ....+.+..+...++| +++
T Consensus 69 ~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~i~~~l~~~~~~-~ii 140 (196)
T PRK00454 69 NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLK-------ELDLQMIEWLKEYGIP-VLI 140 (196)
T ss_pred CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCC-------HHHHHHHHHHHHcCCc-EEE
Confidence 4789999999963 3322222 33345578999999887632 2344556667778898 889
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 226 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 226 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
++||+|+. + ....+.+.+.+...+... ..+++|+||++|.|+.++.
T Consensus 141 v~nK~Dl~--~--~~~~~~~~~~i~~~l~~~------~~~~~~~Sa~~~~gi~~l~ 186 (196)
T PRK00454 141 VLTKADKL--K--KGERKKQLKKVRKALKFG------DDEVILFSSLKKQGIDELR 186 (196)
T ss_pred EEECcccC--C--HHHHHHHHHHHHHHHHhc------CCceEEEEcCCCCCHHHHH
Confidence 99999983 2 223344445555555433 2479999999999999853
No 139
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.67 E-value=4.2e-16 Score=141.54 Aligned_cols=149 Identities=21% Similarity=0.234 Sum_probs=96.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--Ce
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~ 160 (513)
.+|+++|++++|||||+++|+...-. .+....++.+.....+..+ ..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFK-------------------------------EDSQHTIGVEFGSKIIRVGGKRV 49 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-------------------------------CCCCCceeeeEEEEEEEECCEEE
Confidence 47999999999999999999532211 0001222222222223333 35
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCCc
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~~ 237 (513)
.+.|+|||||++|.......++.+|++|+|+|++++.. |+ +....+..++. .++| ++++.||+|+....
T Consensus 50 ~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-iivv~nK~D~~~~~- 121 (161)
T cd04113 50 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTS---FE---ALPTWLSDARALASPNIV-VILVGNKSDLADQR- 121 (161)
T ss_pred EEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEEchhcchhc-
Confidence 78999999999998888888899999999999998632 11 22223233332 3677 89999999983211
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
. ...+++..+++..+ ++++.+||++|.|+.+++
T Consensus 122 -~----~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~ 154 (161)
T cd04113 122 -E----VTFLEASRFAQENG------LLFLETSALTGENVEEAF 154 (161)
T ss_pred -c----CCHHHHHHHHHHcC------CEEEEEECCCCCCHHHHH
Confidence 0 01122233333333 579999999999999863
No 140
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.67 E-value=3e-16 Score=144.04 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=95.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
+..+|+++|++++|||||+++|.. +.... .....|.++ ..+.....
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~--~~~~~----------------------------~~~t~g~~~----~~~~~~~~ 53 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKL--GQSVT----------------------------TIPTVGFNV----ETVTYKNV 53 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHcc--CCCcc----------------------------ccCCcccce----EEEEECCE
Confidence 458999999999999999999842 11100 000012222 23445678
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHH-HHH---HcCCCeEEEEEeeccCCCCC
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAK---TLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~-~~~---~~~ip~~ivviNK~D~~~~~ 236 (513)
.+.|+||||+++|...+...++.+|++|+|+|+++... |. ...+.+. ++. ..++| ++++.||+|+...
T Consensus 54 ~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~- 125 (168)
T cd04149 54 KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR---ID---EARQELHRIINDREMRDAL-LLVFANKQDLPDA- 125 (168)
T ss_pred EEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhh---HH---HHHHHHHHHhcCHhhcCCc-EEEEEECcCCccC-
Confidence 99999999999998877777899999999999987421 11 2223232 222 23577 9999999998422
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
... +++. ..+...... ...++++++||++|.|+.+++
T Consensus 126 ~~~---~~i~----~~~~~~~~~-~~~~~~~~~SAk~g~gv~~~~ 162 (168)
T cd04149 126 MKP---HEIQ----EKLGLTRIR-DRNWYVQPSCATSGDGLYEGL 162 (168)
T ss_pred CCH---HHHH----HHcCCCccC-CCcEEEEEeeCCCCCChHHHH
Confidence 111 2222 222111111 113578999999999998853
No 141
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.67 E-value=4.2e-16 Score=125.48 Aligned_cols=82 Identities=62% Similarity=0.963 Sum_probs=78.0
Q ss_pred CceEEEEEEEcc-CCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeE
Q 010318 311 PFRMPIIDKFKD-MGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 389 (513)
Q Consensus 311 ~~~~~i~~~~~~-~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~v 389 (513)
||+|+|+++|+. .|++++|+|.+|++++||++.++|++..++|++|++++.++++|.|||+|+++|++++..++++||+
T Consensus 1 p~r~~V~~v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~~~~~~~a~aGd~v~~~l~~~~~~~v~~G~v 80 (83)
T cd03698 1 PFRLPISDKYKDQGGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVDDEEVDYAVAGENVRLKLKGIDEEDISPGDV 80 (83)
T ss_pred CeEEEEEeEEEcCCCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEECCeECCEECCCCEEEEEECCCCHHHCCCCCE
Confidence 799999999932 8999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred Ecc
Q 010318 390 LSS 392 (513)
Q Consensus 390 l~~ 392 (513)
|++
T Consensus 81 l~~ 83 (83)
T cd03698 81 LCS 83 (83)
T ss_pred EeC
Confidence 974
No 142
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.67 E-value=1.1e-15 Score=137.32 Aligned_cols=150 Identities=20% Similarity=0.231 Sum_probs=97.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
++|+++|++++|||||+++|........ ..+..+.+..............+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~~ 51 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-----------------------------YKSTIGVDFKSKTIEIDGKTVKL 51 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-----------------------------cCCceeeeeEEEEEEECCEEEEE
Confidence 4799999999999999999943221100 00112222222222222244778
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCC-CCCch
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH-TVNWS 238 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~-~~~~~ 238 (513)
.++|+||+..|.......++.+|++|+|+|+.+... ++ .....+..+... +.| +++++||+|+. .....
T Consensus 52 ~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~ 124 (159)
T cd00154 52 QIWDTAGQERFRSITPSYYRGAHGAILVYDITNRES---FE---NLDKWLKELKEYAPENIP-IILVGNKIDLEDQRQVS 124 (159)
T ss_pred EEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEEccccccccccc
Confidence 999999999999988888999999999999987421 11 223334344443 477 99999999994 11112
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.+++..+.... .++++.+||++|.|+.+++
T Consensus 125 -------~~~~~~~~~~~------~~~~~~~sa~~~~~i~~~~ 154 (159)
T cd00154 125 -------TEEAQQFAKEN------GLLFFETSAKTGENVEELF 154 (159)
T ss_pred -------HHHHHHHHHHc------CCeEEEEecCCCCCHHHHH
Confidence 12233333332 3589999999999998853
No 143
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.67 E-value=3.2e-16 Score=143.94 Aligned_cols=150 Identities=20% Similarity=0.168 Sum_probs=94.6
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
+|+++|..++|||||+++|... .... ...|+......++..+..+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~--~~~~--------------------------------~~~T~~~~~~~~~~~~~~i~ 46 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQD--EFMQ--------------------------------PIPTIGFNVETVEYKNLKFT 46 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcC--CCCC--------------------------------cCCcCceeEEEEEECCEEEE
Confidence 4889999999999999998432 1000 11122222234566788999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-H---cCCCeEEEEEeeccCCCCCchH
Q 010318 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-T---LGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-~---~~ip~~ivviNK~D~~~~~~~~ 239 (513)
|+||||+.+|...+...++.+|++|+|+|++.... + ....+.+..+. . .+.| +++|.||+|+... .+.
T Consensus 47 l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~-~~~ 118 (169)
T cd04158 47 IWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDR---V---SEAHSELAKLLTEKELRDAL-LLIFANKQDVAGA-LSV 118 (169)
T ss_pred EEECCCChhcchHHHHHhccCCEEEEEEeCCcHHH---H---HHHHHHHHHHhcChhhCCCC-EEEEEeCcCcccC-CCH
Confidence 99999999998888788899999999999986421 1 12222222222 1 2366 9999999998422 111
Q ss_pred HHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+ + +..++...++.....+.++++||++|.|+.++++
T Consensus 119 ~---~----~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~ 154 (169)
T cd04158 119 E---E----MTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLD 154 (169)
T ss_pred H---H----HHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHH
Confidence 1 1 2222211111001135788999999999998643
No 144
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.67 E-value=3.4e-16 Score=161.44 Aligned_cols=157 Identities=18% Similarity=0.145 Sum_probs=98.0
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
+-...|+++|.||+|||||+|+|......+ ....+.|.......+.+.+
T Consensus 157 k~iadValVG~PNaGKSTLln~Lt~~k~~v-------------------------------s~~p~TT~~p~~Giv~~~~ 205 (390)
T PRK12298 157 KLLADVGLLGLPNAGKSTFIRAVSAAKPKV-------------------------------ADYPFTTLVPNLGVVRVDD 205 (390)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhCCcccc-------------------------------cCCCCCccCcEEEEEEeCC
Confidence 344579999999999999999995322111 1114556555555566654
Q ss_pred -eEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEEE
Q 010318 160 -TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLV 226 (513)
Q Consensus 160 -~~i~liDtPGh~~-------f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ivv 226 (513)
..|.|+||||... ....+++.+..+|++++|||+...... +...+....+..+.. .+.| +|+|
T Consensus 206 ~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~---d~~e~~~~l~~eL~~~~~~L~~kP-~IlV 281 (390)
T PRK12298 206 ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGS---DPVENARIIINELEKYSPKLAEKP-RWLV 281 (390)
T ss_pred CcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCccccc---ChHHHHHHHHHHHHhhhhhhcCCC-EEEE
Confidence 4699999999643 344566778899999999998721000 000122333333333 2577 7899
Q ss_pred EeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 227 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 227 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+||+|+... ..+. +.+..+.+..++ ..+++++||+++.|+.++++
T Consensus 282 lNKiDl~~~----~el~---~~l~~l~~~~~~----~~~Vi~ISA~tg~GIdeLl~ 326 (390)
T PRK12298 282 FNKIDLLDE----EEAE---ERAKAIVEALGW----EGPVYLISAASGLGVKELCW 326 (390)
T ss_pred EeCCccCCh----HHHH---HHHHHHHHHhCC----CCCEEEEECCCCcCHHHHHH
Confidence 999998321 2222 222223333332 13689999999999999755
No 145
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.67 E-value=5.6e-16 Score=142.08 Aligned_cols=151 Identities=21% Similarity=0.188 Sum_probs=97.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeE
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 161 (513)
..+|+++|++|+|||||+++|+...-... .....|.+.......+......
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~~ 54 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMITIDGKQIK 54 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-----------------------------CCCccceeEEEEEEEECCEEEE
Confidence 47899999999999999999843211000 0001233333333333333457
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCC-Cc
Q 010318 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV-NW 237 (513)
Q Consensus 162 i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~-~~ 237 (513)
+.|+||||+++|.......++.+|++|+|+|++.... ++ .....+..++. .++| +|++.||+|+... ..
T Consensus 55 ~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-vivv~nK~Dl~~~~~~ 127 (168)
T cd01866 55 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLTSWLEDARQHSNSNMT-IMLIGNKCDLESRREV 127 (168)
T ss_pred EEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEECcccccccCC
Confidence 8999999999998888888899999999999986421 11 22223333333 2577 8999999998421 11
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+. ++...++...+ ++++++||++|.|+.+++
T Consensus 128 ~~-------~~~~~~~~~~~------~~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 128 SY-------EEGEAFAKEHG------LIFMETSAKTASNVEEAF 158 (168)
T ss_pred CH-------HHHHHHHHHcC------CEEEEEeCCCCCCHHHHH
Confidence 11 12223333332 479999999999999864
No 146
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.67 E-value=1.4e-15 Score=138.09 Aligned_cols=148 Identities=18% Similarity=0.191 Sum_probs=94.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe----C
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET----E 158 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~----~ 158 (513)
++|+++|.+++|||||+++|.. +.... +..+.+..+.....+.. .
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~ 49 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVK--GIFTK-----------------------------DYKKTIGVDFLEKQIFLRQSDE 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCCC-----------------------------CCCCcEEEEEEEEEEEEcCCCC
Confidence 3799999999999999999842 11100 00122223332222332 3
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCC-
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTV- 235 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~- 235 (513)
...+.|+||||+++|...+...++.+|++++|+|+++... |+ .....+..+.. .++| +|+++||+|+...
T Consensus 50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~~---~l~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~ 122 (162)
T cd04106 50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRES---FE---AIESWKEKVEAECGDIP-MVLVQTKIDLLDQA 122 (162)
T ss_pred EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEEChhccccc
Confidence 4679999999999998888888899999999999987531 11 11111222222 3788 8999999998321
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
..+. ++...+.+.++ ++++++||++|.|+.+++
T Consensus 123 ~v~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~ 155 (162)
T cd04106 123 VITN-------EEAEALAKRLQ------LPLFRTSVKDDFNVTELF 155 (162)
T ss_pred CCCH-------HHHHHHHHHcC------CeEEEEECCCCCCHHHHH
Confidence 1111 22233333333 479999999999998853
No 147
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.67 E-value=4.4e-16 Score=141.74 Aligned_cols=147 Identities=20% Similarity=0.172 Sum_probs=91.9
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe--CCeE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETTR 161 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~--~~~~ 161 (513)
+|+++|++|+|||||+++|+... .... . ...+.+.-...+.. ....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~--~~~~------------------------~------~~t~~~~~~~~~~~~~~~~~ 49 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH--FVDD------------------------Y------DPTIEDSYRKQIEIDGEVCL 49 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCcc------------------------c------CCchhhhEEEEEEECCEEEE
Confidence 79999999999999999995322 1110 0 00000000112222 2357
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-HH---cCCCeEEEEEeeccCCCCC-
Q 010318 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KT---LGVTKLLLVVNKMDDHTVN- 236 (513)
Q Consensus 162 i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~-~~---~~ip~~ivviNK~D~~~~~- 236 (513)
+.++||||+++|...+...++.+|++++|+|++.... |+ ........+ +. .++| +|++.||+|+....
T Consensus 50 l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-ii~v~nK~Dl~~~~~ 122 (164)
T smart00173 50 LDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQS---FE---EIKKFREQILRVKDRDDVP-IVLVGNKCDLESERV 122 (164)
T ss_pred EEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccccce
Confidence 8899999999998888888899999999999987421 11 111111222 22 2577 89999999984211
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... +....+.+.. .++++++||++|.|+.++++
T Consensus 123 ~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 123 VST-------EEGKELARQW------GCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred EcH-------HHHHHHHHHc------CCEEEEeecCCCCCHHHHHH
Confidence 111 1222233332 25899999999999998643
No 148
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.66 E-value=1e-15 Score=142.22 Aligned_cols=153 Identities=17% Similarity=0.198 Sum_probs=97.2
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
++..+|+++|..++|||||+.+|.. +.... .....|.+ ...+...+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~--~~~~~----------------------------~~pt~g~~----~~~~~~~~ 60 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKL--GEIVT----------------------------TIPTIGFN----VETVEYKN 60 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHcc--CCCcc----------------------------ccCCccee----EEEEEECC
Confidence 4558999999999999999998831 21100 00012222 23355678
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-H---HcCCCeEEEEEeeccCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~-~---~~~ip~~ivviNK~D~~~~ 235 (513)
..+.|+|+||++.|...+...++.+|++|+|+|+++... +. ..+..+..+ . ..++| ++|+.||+|++..
T Consensus 61 ~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s---~~---~~~~~l~~~l~~~~~~~~p-iilv~NK~Dl~~~ 133 (181)
T PLN00223 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDR---VV---EARDELHRMLNEDELRDAV-LLVFANKQDLPNA 133 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHH---HH---HHHHHHHHHhcCHhhCCCC-EEEEEECCCCCCC
Confidence 899999999999998888888899999999999987421 10 122222222 1 12567 9999999998433
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
- . .+++.+ .+.-..+. ...+.++++||++|+|+.++++
T Consensus 134 ~-~---~~~~~~----~l~l~~~~-~~~~~~~~~Sa~~g~gv~e~~~ 171 (181)
T PLN00223 134 M-N---AAEITD----KLGLHSLR-QRHWYIQSTCATSGEGLYEGLD 171 (181)
T ss_pred C-C---HHHHHH----HhCccccC-CCceEEEeccCCCCCCHHHHHH
Confidence 1 1 122222 22111111 1234677999999999998643
No 149
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.66 E-value=5e-16 Score=147.11 Aligned_cols=147 Identities=19% Similarity=0.188 Sum_probs=91.9
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+++|++|+|||||+++|........ ...+.|++.....+.+.+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~ 87 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAE-------------------------------DQLFATLDPTTRRLRLPD 87 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccC-------------------------------CccceeccceeEEEEecC
Confidence 4468999999999999999999954321100 002233333334444444
Q ss_pred e-EEEEEeCCCCcch--------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEE
Q 010318 160 T-RFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVV 227 (513)
Q Consensus 160 ~-~i~liDtPGh~~f--------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivvi 227 (513)
. .+.|+||||+.+. ...+...+..+|++++|+|++++... .+...+..++... ++| +++|+
T Consensus 88 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~------~~~~~~~~~l~~~~~~~~~-viiV~ 160 (204)
T cd01878 88 GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYE------EQIETVEKVLKELGAEDIP-MILVL 160 (204)
T ss_pred CceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChh------hHHHHHHHHHHHcCcCCCC-EEEEE
Confidence 3 8999999998331 11222335689999999999976421 1223333444443 567 99999
Q ss_pred eeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 228 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 228 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
||+|+... . ... ..+.. ...+++++||++|.|+.++.
T Consensus 161 NK~Dl~~~--~--~~~-------~~~~~------~~~~~~~~Sa~~~~gi~~l~ 197 (204)
T cd01878 161 NKIDLLDD--E--ELE-------ERLEA------GRPDAVFISAKTGEGLDELL 197 (204)
T ss_pred EccccCCh--H--HHH-------HHhhc------CCCceEEEEcCCCCCHHHHH
Confidence 99999422 1 111 11211 13579999999999999854
No 150
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.66 E-value=1.4e-15 Score=139.19 Aligned_cols=151 Identities=17% Similarity=0.154 Sum_probs=96.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--C
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 159 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~ 159 (513)
.++|+++|.+++|||||++++.. +.... +....+..+.....+... .
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~--~~f~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 51 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSE--DSFNP-----------------------------SFISTIGIDFKIRTIELDGKK 51 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhh--CcCCc-----------------------------ccccCccceEEEEEEEECCEE
Confidence 47999999999999999999843 21111 000111222222223333 3
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~ 236 (513)
..+.|+||||+++|.......++.+|++|+|+|++++.. |+ +..+.+..+.. .++| ++++.||+|+....
T Consensus 52 ~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~iiv~nK~Dl~~~~ 124 (167)
T cd01867 52 IKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKS---FE---NIRNWMRNIEEHASEDVE-RMLVGNKCDMEEKR 124 (167)
T ss_pred EEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCCCCCc-EEEEEECccccccc
Confidence 578999999999998888777899999999999987532 11 22223333332 3567 89999999994211
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+... ++...+.... ..+++++||++|.|+.+++.
T Consensus 125 --~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~~ 158 (167)
T cd01867 125 --VVSK----EEGEALADEY------GIKFLETSAKANINVEEAFF 158 (167)
T ss_pred --CCCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 1111 1222233333 24799999999999998643
No 151
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.66 E-value=1.4e-15 Score=138.30 Aligned_cols=149 Identities=19% Similarity=0.232 Sum_probs=93.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
.+|+++|..++|||||+++|. .+.... .. ...|..+ ..+......+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~--~~~~~~-------------------------~~---pt~g~~~----~~~~~~~~~~ 46 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLK--LGEIVT-------------------------TI---PTIGFNV----ETVEYKNISF 46 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHh--cCCCcc-------------------------cC---CCCCcce----EEEEECCEEE
Confidence 369999999999999999983 221110 00 0012221 2344567889
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-HH---cCCCeEEEEEeeccCCCCCch
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KT---LGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~-~~---~~ip~~ivviNK~D~~~~~~~ 238 (513)
.|+||||+.+|...+...++.+|++|+|+|++.... + .+..+.+..+ .. .+.| ++++.||+|+.... .
T Consensus 47 ~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~~-~ 118 (159)
T cd04150 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---I---GEAREELQRMLNEDELRDAV-LLVFANKQDLPNAM-S 118 (159)
T ss_pred EEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhcHHhcCCC-EEEEEECCCCCCCC-C
Confidence 999999999998888888899999999999986421 1 1233333222 21 2467 99999999984321 1
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
. .++...+ ....+. ...+.++++||++|.|+.+++
T Consensus 119 ~---~~i~~~~----~~~~~~-~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 119 A---AEVTDKL----GLHSLR-NRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred H---HHHHHHh----CccccC-CCCEEEEEeeCCCCCCHHHHH
Confidence 1 1222211 110111 124578899999999999853
No 152
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.65 E-value=1.5e-15 Score=137.64 Aligned_cols=149 Identities=21% Similarity=0.237 Sum_probs=92.9
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe-CCeEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTRF 162 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i 162 (513)
+|+++|.+|+|||||+++|.... ... .....|.+. ..+.. ....+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~--~~~----------------------------~~~t~~~~~----~~~~~~~~~~l 46 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAE--LVT----------------------------TIPTVGFNV----EMLQLEKHLSL 46 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--ccc----------------------------ccCccCcce----EEEEeCCceEE
Confidence 48999999999999999994321 100 000012221 12222 35789
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHH-HH---HcCCCeEEEEEeeccCCCCCch
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML-AK---TLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~-~~---~~~ip~~ivviNK~D~~~~~~~ 238 (513)
.|+||||+..|...+...+..+|++|+|+|+.+... + ......+.. ++ ..++| +++++||+|+.... .
T Consensus 47 ~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~ 118 (160)
T cd04156 47 TVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEAR---L---DESQKELKHILKNEHIKGVP-VVLLANKQDLPGAL-T 118 (160)
T ss_pred EEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHH---H---HHHHHHHHHHHhchhhcCCC-EEEEEECcccccCc-C
Confidence 999999999998888888899999999999987521 1 112222222 21 14678 99999999984321 1
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
..++...+. +.. +.....++++++||++|.|+.+++
T Consensus 119 ---~~~i~~~~~--~~~--~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 119 ---AEEITRRFK--LKK--YCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred ---HHHHHHHcC--Ccc--cCCCCcEEEEecccccCCChHHHH
Confidence 122222221 011 111124689999999999999853
No 153
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.65 E-value=5.5e-16 Score=164.02 Aligned_cols=146 Identities=21% Similarity=0.298 Sum_probs=104.6
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeE
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 161 (513)
..+||++|+||+|||||+|+|. |......+| .|+|++.....+...++.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LT---------------------G~~q~VgNw----------pGvTVEkkeg~~~~~~~~ 51 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALT---------------------GANQKVGNW----------PGVTVEKKEGKLKYKGHE 51 (653)
T ss_pred cceEEEecCCCccHHHHHHHHh---------------------ccCceecCC----------CCeeEEEEEEEEEecCce
Confidence 3569999999999999999992 333334455 999999999999999999
Q ss_pred EEEEeCCCCcch---------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 162 FTILDAPGHKSY---------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 162 i~liDtPGh~~f---------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
+.++|+||.-++ .+..+. -..+|++|.||||++= ........++..+|+| +|+++|++|.
T Consensus 52 i~ivDLPG~YSL~~~S~DE~Var~~ll-~~~~D~ivnVvDAtnL---------eRnLyltlQLlE~g~p-~ilaLNm~D~ 120 (653)
T COG0370 52 IEIVDLPGTYSLTAYSEDEKVARDFLL-EGKPDLIVNVVDATNL---------ERNLYLTLQLLELGIP-MILALNMIDE 120 (653)
T ss_pred EEEEeCCCcCCCCCCCchHHHHHHHHh-cCCCCEEEEEcccchH---------HHHHHHHHHHHHcCCC-eEEEeccHhh
Confidence 999999995433 222211 2478999999999852 1233333456678999 9999999998
Q ss_pred CCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... +.+.-...++-+.+| +|++|+||++|.|++++.+
T Consensus 121 A~~-------~Gi~ID~~~L~~~LG------vPVv~tvA~~g~G~~~l~~ 157 (653)
T COG0370 121 AKK-------RGIRIDIEKLSKLLG------VPVVPTVAKRGEGLEELKR 157 (653)
T ss_pred HHh-------cCCcccHHHHHHHhC------CCEEEEEeecCCCHHHHHH
Confidence 311 112222222333333 6899999999999988643
No 154
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.65 E-value=1e-15 Score=139.81 Aligned_cols=151 Identities=21% Similarity=0.189 Sum_probs=96.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--C
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 159 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~ 159 (513)
..+|+++|.+|+|||||+++|+.. .... .....++.+.....+... .
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~ 50 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADD--TYTE-----------------------------SYISTIGVDFKIRTIELDGKT 50 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC--CCCC-----------------------------CCCCccceeEEEEEEEECCEE
Confidence 368999999999999999999422 1100 001222223322333333 3
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~ 236 (513)
..+.|+||||+++|.......++.+|++|+|+|+++... |. +..+.+..+.. .++| +|++.||+|+....
T Consensus 51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~~---~l~~~~~~~~~~~~~~~~-~iiv~nK~Dl~~~~ 123 (166)
T cd01869 51 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FN---NVKQWLQEIDRYASENVN-KLLVGNKCDLTDKR 123 (166)
T ss_pred EEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHH---HH---hHHHHHHHHHHhCCCCCc-EEEEEEChhccccc
Confidence 578999999999998888788899999999999987421 11 22333333333 2567 89999999984221
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.... ++...+.+.. .++++++||++|.|+.+++.
T Consensus 124 --~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~~ 157 (166)
T cd01869 124 --VVDY----SEAQEFADEL------GIPFLETSAKNATNVEQAFM 157 (166)
T ss_pred --CCCH----HHHHHHHHHc------CCeEEEEECCCCcCHHHHHH
Confidence 1011 1222223332 35899999999999998643
No 155
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.65 E-value=1e-15 Score=139.77 Aligned_cols=152 Identities=17% Similarity=0.188 Sum_probs=94.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
.+|+++|.+|+|||||+++|... ..... + ....|++..............+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~--~~~~~--------------------~-------~~t~~~~~~~~~~~~~~~~~~~ 52 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADD--SFTSA--------------------F-------VSTVGIDFKVKTVFRNDKRVKL 52 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCCCC--------------------C-------CCceeeEEEEEEEEECCEEEEE
Confidence 58999999999999999999432 11000 0 0001222222111122223678
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCCchH
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~~~~ 239 (513)
.|+||||+++|.......++.+|++++|+|++.... |+ +..+.+..+... +.| ++++.||+|+.... .
T Consensus 53 ~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iivv~nK~Dl~~~~--~ 123 (165)
T cd01865 53 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---FN---AVQDWSTQIKTYSWDNAQ-VILVGNKCDMEDER--V 123 (165)
T ss_pred EEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCC-EEEEEECcccCccc--c
Confidence 999999999998888888899999999999876421 11 233333333332 456 99999999984221 1
Q ss_pred HHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. .++...+...++ ++++++||++|.|+.++++
T Consensus 124 ~~----~~~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 124 VS----SERGRQLADQLG------FEFFEASAKENINVKQVFE 156 (165)
T ss_pred cC----HHHHHHHHHHcC------CEEEEEECCCCCCHHHHHH
Confidence 00 111222233333 4799999999999998644
No 156
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=1.2e-15 Score=139.68 Aligned_cols=153 Identities=18% Similarity=0.152 Sum_probs=97.1
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
+...+|+++|++|+|||||+++|.. +.... .....++.+.....+...+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~--~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 53 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQ--GLFPP-----------------------------GQGATIGVDFMIKTVEIKG 53 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHh--CCCCC-----------------------------CCCCceeeEEEEEEEEECC
Confidence 4568999999999999999999842 21110 0012222233333445555
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH---HcCCCeEEEEEeeccCCC
Q 010318 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK---TLGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 160 --~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~---~~~ip~~ivviNK~D~~~ 234 (513)
..+.|+|+||+..|...+...+..+|++++|+|+.++.. ++ .....+..++ ..++| ++++.||+|+..
T Consensus 54 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~~-~i~v~NK~D~~~ 126 (169)
T cd04114 54 EKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES---FR---CLPEWLREIEQYANNKVI-TILVGNKIDLAE 126 (169)
T ss_pred EEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccc
Confidence 567889999999999888888999999999999987521 11 1122222222 23577 789999999832
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. +........ +.+. ...+++++||++|.|+.++++
T Consensus 127 ~~---~i~~~~~~~----~~~~-----~~~~~~~~Sa~~~~gv~~l~~ 162 (169)
T cd04114 127 RR---EVSQQRAEE----FSDA-----QDMYYLETSAKESDNVEKLFL 162 (169)
T ss_pred cc---ccCHHHHHH----HHHH-----cCCeEEEeeCCCCCCHHHHHH
Confidence 11 111112222 2111 125799999999999998643
No 157
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.65 E-value=2.2e-15 Score=137.24 Aligned_cols=149 Identities=15% Similarity=0.166 Sum_probs=93.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEE--EeCCe
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF--ETETT 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~--~~~~~ 160 (513)
++|+++|++++|||||+++|+...- . ......+..+.....+ .....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~~~~ 49 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRF--V-----------------------------SKYLPTIGIDYGVKKVSVRNKEV 49 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--C-----------------------------CCCCCccceeEEEEEEEECCeEE
Confidence 4799999999999999999953211 0 0011222222222223 33346
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--------cCCCeEEEEEeeccC
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--------LGVTKLLLVVNKMDD 232 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~--------~~ip~~ivviNK~D~ 232 (513)
.++|+||||++.|...+...++.+|++|+|+|+++... |+ .....+..+.. .+.| +++++||+|+
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 122 (168)
T cd04119 50 RVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQS---FE---ALDSWLKEMKQEGGPHGNMENIV-VVVCANKIDL 122 (168)
T ss_pred EEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhccccccCCCce-EEEEEEchhc
Confidence 78999999999998877777889999999999987521 11 11222222221 2456 9999999998
Q ss_pred CCC-CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 233 HTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 233 ~~~-~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... ..+. .+...+.... .++++++||++|.|+.++++
T Consensus 123 ~~~~~~~~-------~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 123 TKHRAVSE-------DEGRLWAESK------GFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ccccccCH-------HHHHHHHHHc------CCeEEEEECCCCCCHHHHHH
Confidence 421 1111 1112222332 24799999999999998643
No 158
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=2e-15 Score=135.03 Aligned_cols=162 Identities=16% Similarity=0.154 Sum_probs=117.1
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
......+|++.|..++||||++.++........... .+. +. ....+..|+...+..+..
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~-------------~~~------~s--~k~kr~tTva~D~g~~~~ 64 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEAD-------------ASS------VS--GKGKRPTTVAMDFGSIEL 64 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeecc-------------ccc------cc--cccccceeEeecccceEE
Confidence 345668999999999999999999965543221110 000 00 000245788777777777
Q ss_pred CC-eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC-CCeEEEEEeeccCCCC
Q 010318 158 ET-TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-VTKLLLVVNKMDDHTV 235 (513)
Q Consensus 158 ~~-~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~-ip~~ivviNK~D~~~~ 235 (513)
.+ +.+.|+|||||++|-.++.-.++.++.+|++||++.+.. ...++.+..+...+ +| ++|++||.|+..+
T Consensus 65 ~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~-------~~a~~ii~f~~~~~~ip-~vVa~NK~DL~~a 136 (187)
T COG2229 65 DEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPIT-------FHAEEIIDFLTSRNPIP-VVVAINKQDLFDA 136 (187)
T ss_pred cCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcc-------hHHHHHHHHHhhccCCC-EEEEeeccccCCC
Confidence 66 899999999999999999999999999999999998731 12366677777777 77 9999999999765
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
|+.+.+.+..+ ... ..+|+|+++|..+++..+.
T Consensus 137 -~ppe~i~e~l~-------~~~----~~~~vi~~~a~e~~~~~~~ 169 (187)
T COG2229 137 -LPPEKIREALK-------LEL----LSVPVIEIDATEGEGARDQ 169 (187)
T ss_pred -CCHHHHHHHHH-------hcc----CCCceeeeecccchhHHHH
Confidence 45544443332 211 1479999999999998874
No 159
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.65 E-value=7.7e-16 Score=134.82 Aligned_cols=133 Identities=19% Similarity=0.249 Sum_probs=95.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
.+|.++|.++||||||+++|..... ....|+.+. +.=
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~-----------------------------------~~~KTq~i~--------~~~ 38 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI-----------------------------------RYKKTQAIE--------YYD 38 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC-----------------------------------CcCccceeE--------ecc
Confidence 4789999999999999999932111 122233221 112
Q ss_pred EEEeCCC----CcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 163 TILDAPG----HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 163 ~liDtPG----h~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
.+||||| +..|.+..+..+..||++++|.||+... ...--.++..++.| +|-||||+|++. +
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~----------~~~pP~fa~~f~~p-vIGVITK~Dl~~---~ 104 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPR----------SVFPPGFASMFNKP-VIGVITKIDLPS---D 104 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCC----------ccCCchhhcccCCC-EEEEEECccCcc---c
Confidence 4699999 6778888888889999999999999852 22222455667788 999999999941 1
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.... +...++|+..|+. .++++|+.+|+|+++|.
T Consensus 105 ~~~i----~~a~~~L~~aG~~-----~if~vS~~~~eGi~eL~ 138 (143)
T PF10662_consen 105 DANI----ERAKKWLKNAGVK-----EIFEVSAVTGEGIEELK 138 (143)
T ss_pred hhhH----HHHHHHHHHcCCC-----CeEEEECCCCcCHHHHH
Confidence 2233 3445567777876 57999999999999853
No 160
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=2e-15 Score=142.78 Aligned_cols=151 Identities=19% Similarity=0.230 Sum_probs=96.1
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe---CC
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET---ET 159 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~---~~ 159 (513)
.+|+++|.+++|||||+++|+. +..... ....+..+.....+.. ..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~--~~~~~~-----------------------------~~~t~~~d~~~~~v~~~~~~~ 49 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVH--GIFSQH-----------------------------YKATIGVDFALKVIEWDPNTV 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHc--CCCCCC-----------------------------CCCceeEEEEEEEEEECCCCE
Confidence 3799999999999999999853 211100 0011222222223333 34
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-------HcCCCeEEEEEeeccC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-------TLGVTKLLLVVNKMDD 232 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-------~~~ip~~ivviNK~D~ 232 (513)
..+.|+||||+++|...+...++.+|++|+|+|.+.... |+ ...+.+..+. ..++| +|+|.||+|+
T Consensus 50 ~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s---~~---~~~~~~~~i~~~~~~~~~~~~p-iilv~NK~Dl 122 (201)
T cd04107 50 VRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPST---FE---AVLKWKADLDSKVTLPNGEPIP-CLLLANKCDL 122 (201)
T ss_pred EEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhcccCCCCCc-EEEEEECCCc
Confidence 678999999999998888788899999999999887421 11 1111111111 13578 8999999999
Q ss_pred CCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.... . ...+++..+++..++ .+++++||++|.|+.++++
T Consensus 123 ~~~~--~----~~~~~~~~~~~~~~~-----~~~~e~Sak~~~~v~e~f~ 161 (201)
T cd04107 123 KKRL--A----KDGEQMDQFCKENGF-----IGWFETSAKEGINIEEAMR 161 (201)
T ss_pred cccc--c----cCHHHHHHHHHHcCC-----ceEEEEeCCCCCCHHHHHH
Confidence 4211 0 112233444444442 3799999999999999754
No 161
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.65 E-value=8e-16 Score=143.85 Aligned_cols=154 Identities=18% Similarity=0.180 Sum_probs=98.0
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+..+|+++|+.|+|||||+++|... .... ...|+......+...+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~--~~~~--------------------------------~~~T~~~~~~~i~~~~ 62 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDD--RLAQ--------------------------------HVPTLHPTSEELTIGN 62 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC--CCcc--------------------------------cCCccCcceEEEEECC
Confidence 45688999999999999999998421 1100 0012222223456677
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~ 235 (513)
..+.++|+||+..|...+...+..+|++++|+|+.+... +. ...+.+..+. ..+.| ++|++||+|+...
T Consensus 63 ~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-vivv~NK~Dl~~~ 135 (190)
T cd00879 63 IKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPER---FQ---ESKEELDSLLSDEELANVP-FLILGNKIDLPGA 135 (190)
T ss_pred EEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHH---HH---HHHHHHHHHHcCccccCCC-EEEEEeCCCCCCC
Confidence 899999999999998777777889999999999986410 10 1222222222 24578 8999999998432
Q ss_pred CchHHHHHHHHhhhHhhhhhccC----------cccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGY----------NVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~----------~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. +. +++ ...+..... .....++++++||++|.|+.++++
T Consensus 136 ~-~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~ 184 (190)
T cd00879 136 V-SE---EEL----RQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFR 184 (190)
T ss_pred c-CH---HHH----HHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHH
Confidence 1 22 222 222221110 001236799999999999998643
No 162
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.65 E-value=2.9e-15 Score=138.65 Aligned_cols=151 Identities=15% Similarity=0.164 Sum_probs=95.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe---
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--- 157 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~--- 157 (513)
..++|+++|.+++|||||++++... ..... ....+..+.....+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~--~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~ 51 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDN--KFNPK-----------------------------FITTVGIDFREKRVVYNSS 51 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC--CCCcc-----------------------------CCCccceEEEEEEEEEcCc
Confidence 3588999999999999999998421 11100 0011112221112221
Q ss_pred ---------CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEE
Q 010318 158 ---------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLL 224 (513)
Q Consensus 158 ---------~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~i 224 (513)
....+.|+||||+++|...+...++.+|++|+|+|+++... |. .....+..+.. .+.| ++
T Consensus 52 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-ii 124 (180)
T cd04127 52 GPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQS---FL---NVRNWMSQLQTHAYCENPD-IV 124 (180)
T ss_pred cccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EE
Confidence 23678999999999998888888899999999999986421 11 12222223332 2456 89
Q ss_pred EEEeeccCCCC-CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 225 LVVNKMDDHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 225 vviNK~D~~~~-~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+|.||+|+... ..+. ++...+.+..+ ++++++||++|.|+.++++
T Consensus 125 iv~nK~Dl~~~~~v~~-------~~~~~~~~~~~------~~~~e~Sak~~~~v~~l~~ 170 (180)
T cd04127 125 LCGNKADLEDQRQVSE-------EQAKALADKYG------IPYFETSAATGTNVEKAVE 170 (180)
T ss_pred EEEeCccchhcCccCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 99999998421 1111 22233333333 4799999999999998754
No 163
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.65 E-value=8.6e-16 Score=162.02 Aligned_cols=142 Identities=20% Similarity=0.223 Sum_probs=100.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
..++|+++|++|+|||||+|+|+.....+. ....|.|.+.....+.+++.
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v------------------------------~~~~gtT~d~~~~~i~~~g~ 263 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIV------------------------------TDIAGTTRDVIEEHINLDGI 263 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCccc------------------------------CCCCCcccccEEEEEEECCe
Confidence 457999999999999999999954321111 11267788777777888899
Q ss_pred EEEEEeCCCCcchH--------HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 161 RFTILDAPGHKSYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 161 ~i~liDtPGh~~f~--------~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
.+.|+||||++++. ..+...+..+|++|+|+|++++.. .+..+.+.. ..+.| +++|+||+|+
T Consensus 264 ~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s-------~~~~~~l~~--~~~~p-iiiV~NK~DL 333 (449)
T PRK05291 264 PLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLT-------EEDDEILEE--LKDKP-VIVVLNKADL 333 (449)
T ss_pred EEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCC-------hhHHHHHHh--cCCCC-cEEEEEhhhc
Confidence 99999999987653 224446788999999999987632 122222222 34677 8999999999
Q ss_pred CCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.... . .. .. ...+++++||++|.|+.++.+
T Consensus 334 ~~~~--~--~~----------~~------~~~~~i~iSAktg~GI~~L~~ 363 (449)
T PRK05291 334 TGEI--D--LE----------EE------NGKPVIRISAKTGEGIDELRE 363 (449)
T ss_pred cccc--h--hh----------hc------cCCceEEEEeeCCCCHHHHHH
Confidence 4221 1 00 11 134799999999999998754
No 164
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.65 E-value=6.5e-15 Score=135.01 Aligned_cols=151 Identities=15% Similarity=0.180 Sum_probs=96.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 158 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-- 158 (513)
..++|+++|.+++|||||+++++. +.... .....++.+.....+..+
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 52 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVT--NKFDT-----------------------------QLFHTIGVEFLNKDLEVDGH 52 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHc--CCCCc-----------------------------CcCCceeeEEEEEEEEECCe
Confidence 458999999999999999999842 21110 001122222222233333
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHH-HH------HcCCCeEEEEEeecc
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML-AK------TLGVTKLLLVVNKMD 231 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~-~~------~~~ip~~ivviNK~D 231 (513)
...+.|+||||+++|...+...++.+|++|+|+|.+.... |+ ...+.+.. +. ..++| ++++.||+|
T Consensus 53 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 125 (170)
T cd04116 53 FVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQS---FQ---NLSNWKKEFIYYADVKEPESFP-FVVLGNKND 125 (170)
T ss_pred EEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhcccccCCCCc-EEEEEECcc
Confidence 3567889999999998888888899999999999887531 11 11111111 11 13578 899999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+...... .+++..++++.++ .+++++||++|.|+.+++
T Consensus 126 l~~~~~~-------~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~~ 163 (170)
T cd04116 126 IPERQVS-------TEEAQAWCRENGD-----YPYFETSAKDATNVAAAF 163 (170)
T ss_pred ccccccC-------HHHHHHHHHHCCC-----CeEEEEECCCCCCHHHHH
Confidence 8422111 1233334444432 379999999999999863
No 165
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=2.7e-15 Score=137.19 Aligned_cols=158 Identities=18% Similarity=0.218 Sum_probs=107.1
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
.....+-||++|+.|+|||||+|+|.+..+.. . ....+|.|+.+.++.+..
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LA-----------------------r------tSktPGrTq~iNff~~~~ 70 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLA-----------------------R------TSKTPGRTQLINFFEVDD 70 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCccee-----------------------e------cCCCCCccceeEEEEecC
Confidence 34466889999999999999999995543211 1 112389999887665543
Q ss_pred CCeEEEEEeCCCC----------c---chHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEE
Q 010318 158 ETTRFTILDAPGH----------K---SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 224 (513)
Q Consensus 158 ~~~~i~liDtPGh----------~---~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~i 224 (513)
. +.|+|.||. + +.+-..+..-..-.+++++||+.++.. ..+++.+.++...++| ++
T Consensus 71 ~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~-------~~D~em~~~l~~~~i~-~~ 139 (200)
T COG0218 71 E---LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK-------DLDREMIEFLLELGIP-VI 139 (200)
T ss_pred c---EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc-------HHHHHHHHHHHHcCCC-eE
Confidence 2 899999994 1 223333333345788999999999853 4688999999999999 89
Q ss_pred EEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 225 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 225 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|++||+|.... .........+...+ ++.+.....++..|+.++.|++++..
T Consensus 140 vv~tK~DKi~~----~~~~k~l~~v~~~l---~~~~~~~~~~~~~ss~~k~Gi~~l~~ 190 (200)
T COG0218 140 VVLTKADKLKK----SERNKQLNKVAEEL---KKPPPDDQWVVLFSSLKKKGIDELKA 190 (200)
T ss_pred EEEEccccCCh----hHHHHHHHHHHHHh---cCCCCccceEEEEecccccCHHHHHH
Confidence 99999999432 22333333333222 22211122288889999999988543
No 166
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.64 E-value=8e-16 Score=144.23 Aligned_cols=151 Identities=17% Similarity=0.174 Sum_probs=94.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe--CCe
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~--~~~ 160 (513)
.+|+++|.+|+|||||+++|........ +....+..+.....+.. ...
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~~~~~~ 50 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNG------------------------------NFIATVGIDFRNKVVTVDGVKV 50 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcc------------------------------CcCCcccceeEEEEEEECCEEE
Confidence 3699999999999999999843211100 00011111221112222 235
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCCc
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~~ 237 (513)
.+.|+||||+.+|.......++.+|++|+|+|++.... |+ .....+..+..+ ++| +++|+||+|+....
T Consensus 51 ~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~~- 122 (191)
T cd04112 51 KLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKAS---FD---NIRAWLTEIKEYAQEDVV-IMLLGNKADMSGER- 122 (191)
T ss_pred EEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEEcccchhcc-
Confidence 78999999999998877777889999999999987421 11 223333333332 577 89999999983211
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. ...+...+....+ ++++++||++|.|+.+++.
T Consensus 123 -~~----~~~~~~~l~~~~~------~~~~e~Sa~~~~~v~~l~~ 156 (191)
T cd04112 123 -VV----KREDGERLAKEYG------VPFMETSAKTGLNVELAFT 156 (191)
T ss_pred -cc----CHHHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 00 0112222333332 4799999999999998644
No 167
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.64 E-value=9.8e-16 Score=139.68 Aligned_cols=151 Identities=19% Similarity=0.226 Sum_probs=96.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 159 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-- 159 (513)
..+|+++|.+++|||||+++|+...- . .+..+.++.+.....+..++
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 51 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEF--N-----------------------------LDSKSTIGVEFATRSIQIDGKT 51 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC--C-----------------------------CCCCCccceEEEEEEEEECCEE
Confidence 36899999999999999999943211 0 00012222333333344444
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~ 236 (513)
..+.|+||||+++|.......+..+|++|+|+|+.+... |+ ...+.+..++. .++| +++|.||+|+....
T Consensus 52 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-i~vv~nK~Dl~~~~ 124 (165)
T cd01868 52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQT---FE---NVERWLKELRDHADSNIV-IMLVGNKSDLRHLR 124 (165)
T ss_pred EEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccccc
Confidence 468999999999998888778889999999999986421 11 12222233322 2467 89999999984221
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... .++...+.... .++++++||++|.|+.++++
T Consensus 125 --~~~----~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~~ 158 (165)
T cd01868 125 --AVP----TEEAKAFAEKN------GLSFIETSALDGTNVEEAFK 158 (165)
T ss_pred --cCC----HHHHHHHHHHc------CCEEEEEECCCCCCHHHHHH
Confidence 111 11222233322 35799999999999998643
No 168
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=2e-15 Score=152.78 Aligned_cols=154 Identities=17% Similarity=0.138 Sum_probs=98.2
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe-
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 157 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~- 157 (513)
-+-...|+++|.||||||||+++|......+. ...+.|.......+.+
T Consensus 155 lk~~adVglVG~PNaGKSTLln~ls~a~~~va-------------------------------~ypfTT~~p~~G~v~~~ 203 (335)
T PRK12299 155 LKLLADVGLVGLPNAGKSTLISAVSAAKPKIA-------------------------------DYPFTTLHPNLGVVRVD 203 (335)
T ss_pred EcccCCEEEEcCCCCCHHHHHHHHHcCCCccC-------------------------------CCCCceeCceEEEEEeC
Confidence 34567899999999999999999943221111 1134566655555666
Q ss_pred CCeEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEE
Q 010318 158 ETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLL 225 (513)
Q Consensus 158 ~~~~i~liDtPGh~~-------f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~iv 225 (513)
+...|+|+|+||... +....++.+..+|++|+|+|++.... ++ +.......+.. .+.| +|+
T Consensus 204 ~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s---~e---~~~~~~~EL~~~~~~L~~kp-~II 276 (335)
T PRK12299 204 DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDP---VE---DYKTIRNELEKYSPELADKP-RIL 276 (335)
T ss_pred CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCC---HH---HHHHHHHHHHHhhhhcccCC-eEE
Confidence 557899999999632 34456667788999999999986421 11 22222223332 3567 889
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 226 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 226 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+||+|+.... .... ..+..+++.. ..+++++||++|+|+.++++
T Consensus 277 V~NKiDL~~~~---~~~~---~~~~~~~~~~------~~~i~~iSAktg~GI~eL~~ 321 (335)
T PRK12299 277 VLNKIDLLDEE---EERE---KRAALELAAL------GGPVFLISAVTGEGLDELLR 321 (335)
T ss_pred EEECcccCCch---hHHH---HHHHHHHHhc------CCCEEEEEcCCCCCHHHHHH
Confidence 99999984321 1111 1122222222 24799999999999999754
No 169
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.64 E-value=3.3e-15 Score=140.89 Aligned_cols=151 Identities=17% Similarity=0.203 Sum_probs=88.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--e
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~ 160 (513)
.+|+++|.+|+|||||+++++. +.... +....++.+.....+.+++ .
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~--~~f~~-----------------------------~~~pt~~~~~~~~~i~~~~~~~ 49 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLA--QEFPE-----------------------------EYIPTEHRRLYRPAVVLSGRVY 49 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHc--CCCCc-----------------------------ccCCccccccceeEEEECCEEE
Confidence 4799999999999999999843 21110 0001111111112233344 5
Q ss_pred EEEEEeCCCCcchH--------HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH------HcCCCeEEEE
Q 010318 161 RFTILDAPGHKSYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK------TLGVTKLLLV 226 (513)
Q Consensus 161 ~i~liDtPGh~~f~--------~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~------~~~ip~~ivv 226 (513)
.+.|+||||+.+|. ......+..+|++|+|+|++.... |+ .....+..+. ..++| +|+|
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S---~~---~~~~~~~~i~~~~~~~~~~~p-iiiv 122 (198)
T cd04142 50 DLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDS---FH---YVKLLRQQILETRPAGNKEPP-IVVV 122 (198)
T ss_pred EEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcccCCCCCC-EEEE
Confidence 78899999987652 113345678999999999987521 11 1111122222 13578 8999
Q ss_pred EeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 227 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 227 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.||+|+...... . .+.+..+.++. + .++++++||++|.|+.++++
T Consensus 123 gNK~Dl~~~~~~--~----~~~~~~~~~~~-~----~~~~~e~Sak~g~~v~~lf~ 167 (198)
T cd04142 123 GNKRDQQRHRFA--P----RHVLSVLVRKS-W----KCGYLECSAKYNWHILLLFK 167 (198)
T ss_pred EECccccccccc--c----HHHHHHHHHHh-c----CCcEEEecCCCCCCHHHHHH
Confidence 999999432110 0 11122222221 1 36899999999999999754
No 170
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.64 E-value=1.7e-15 Score=138.12 Aligned_cols=148 Identities=21% Similarity=0.199 Sum_probs=93.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--Ce
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~ 160 (513)
.+|+++|.+|+|||||+++++ .|...... ....+.+. ...+..+ ..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~--~~~~~~~~---------------------------~~t~~~~~---~~~~~~~~~~~ 49 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFV--QGIFVEKY---------------------------DPTIEDSY---RKQVEVDGQQC 49 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHH--hCCCCccc---------------------------CCcchheE---EEEEEECCEEE
Confidence 579999999999999999985 22211100 00011111 1223333 45
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCCCC
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~~ 236 (513)
.+.|+||||++.|...+...++.+|++|+|+|.+.... |+ ...+.+..+. ..++| ++++.||+|+....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~ 122 (164)
T cd04175 50 MLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQST---FN---DLQDLREQILRVKDTEDVP-MILVGNKCDLEDER 122 (164)
T ss_pred EEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECCcchhcc
Confidence 67899999999999888888999999999999876421 11 1122222222 23578 99999999984211
Q ss_pred -chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 -~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.... +...+.+.. ..+++++||++|.|+.+++.
T Consensus 123 ~~~~~-------~~~~~~~~~------~~~~~~~Sa~~~~~v~~~~~ 156 (164)
T cd04175 123 VVGKE-------QGQNLARQW------GCAFLETSAKAKINVNEIFY 156 (164)
T ss_pred EEcHH-------HHHHHHHHh------CCEEEEeeCCCCCCHHHHHH
Confidence 1111 112222333 24899999999999998643
No 171
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.64 E-value=9.2e-16 Score=156.53 Aligned_cols=145 Identities=19% Similarity=0.195 Sum_probs=93.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe-CC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ET 159 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~ 159 (513)
..++|+++|.+|+|||||+|+|..... +. ....+.|.+.....+.. ++
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~-~v------------------------------~~~~~tT~d~~~~~i~~~~~ 236 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADV-YA------------------------------ADQLFATLDPTTRRLDLPDG 236 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCce-ee------------------------------ccCCccccCCEEEEEEeCCC
Confidence 458999999999999999999953221 00 01135566555555666 56
Q ss_pred eEEEEEeCCCC-cch-------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEe
Q 010318 160 TRFTILDAPGH-KSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVN 228 (513)
Q Consensus 160 ~~i~liDtPGh-~~f-------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviN 228 (513)
..+.|+||||. ++. .+.+...+..||++|+|+|++++... .+......++..+ +.| +|+|+|
T Consensus 237 ~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~------~~~~~~~~~L~~l~~~~~p-iIlV~N 309 (351)
T TIGR03156 237 GEVLLTDTVGFIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDRE------EQIEAVEKVLEELGAEDIP-QLLVYN 309 (351)
T ss_pred ceEEEEecCcccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchH------HHHHHHHHHHHHhccCCCC-EEEEEE
Confidence 79999999997 221 22344457899999999999876321 1222222334443 577 899999
Q ss_pred eccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 229 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
|+|+. + ...... ... + ..+++++||++|.|+.++.
T Consensus 310 K~Dl~--~--~~~v~~-------~~~--~-----~~~~i~iSAktg~GI~eL~ 344 (351)
T TIGR03156 310 KIDLL--D--EPRIER-------LEE--G-----YPEAVFVSAKTGEGLDLLL 344 (351)
T ss_pred eecCC--C--hHhHHH-------HHh--C-----CCCEEEEEccCCCCHHHHH
Confidence 99993 2 111111 111 1 1368999999999999854
No 172
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.64 E-value=4.1e-15 Score=135.85 Aligned_cols=149 Identities=17% Similarity=0.153 Sum_probs=93.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
.+|+++|.+|+|||||+++++. +...... . + ..+.+. .....+......+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~--~~f~~~~--------------------~----~---t~~~~~-~~~~~~~~~~~~l 51 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK--GTFRESY--------------------I----P---TIEDTY-RQVISCSKNICTL 51 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCCCc--------------------C----C---cchheE-EEEEEECCEEEEE
Confidence 5799999999999999999853 2211000 0 0 000011 1112223344678
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH------cCCCeEEEEEeeccCCCC-
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDDHTV- 235 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~------~~ip~~ivviNK~D~~~~- 235 (513)
.|+||||+++|........+.+|++|+|+|.+.... | ......+..++. .++| +++|.||+|+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl~~~~ 124 (165)
T cd04140 52 QITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQS---L---EELKPIYELICEIKGNNIEKIP-IMLVGNKCDESHKR 124 (165)
T ss_pred EEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHHhcCCCCCCC-EEEEEECccccccC
Confidence 999999999998877777889999999999987531 1 122333333333 3578 8999999998431
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.... .+...+.... .++++++||++|.|+.+++
T Consensus 125 ~v~~-------~~~~~~~~~~------~~~~~e~SA~~g~~v~~~f 157 (165)
T cd04140 125 EVSS-------NEGAACATEW------NCAFMETSAKTNHNVQELF 157 (165)
T ss_pred eecH-------HHHHHHHHHh------CCcEEEeecCCCCCHHHHH
Confidence 1111 1111122222 3579999999999999864
No 173
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.64 E-value=2.6e-15 Score=139.91 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=99.1
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+..+|+++|.+|+|||||+++|... .+.. ...|.......+...+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 60 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKND--RLAQ--------------------------------HQPTQHPTSEELAIGN 60 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcC--CCcc--------------------------------cCCccccceEEEEECC
Confidence 45589999999999999999998431 1100 0001111223345567
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~ 235 (513)
..+.++||||+.++...+...+..+|++|+|+|+++... + ....+.+..+. ..++| +++++||+|++..
T Consensus 61 ~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~---~---~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~ 133 (184)
T smart00178 61 IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKER---F---AESKRELDALLSDEELATVP-FLILGNKIDAPYA 133 (184)
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHH---H---HHHHHHHHHHHcChhhcCCC-EEEEEeCccccCC
Confidence 899999999999998888888899999999999986421 1 12232332221 24778 9999999998432
Q ss_pred CchHHHHHHHHhhhHhh--hhhccCcccCCeeEEEeeccccccccccc
Q 010318 236 NWSKERYDEIESKMTPF--LKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~--l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.+.+ ++.+.+.-. ....+........++++||++|.|+.+++
T Consensus 134 -~~~~---~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~ 177 (184)
T smart00178 134 -ASED---ELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGF 177 (184)
T ss_pred -CCHH---HHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHH
Confidence 2222 333333210 00000000124679999999999999854
No 174
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.64 E-value=1.9e-15 Score=139.71 Aligned_cols=153 Identities=16% Similarity=0.197 Sum_probs=98.0
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
+..++|+++|..++|||||+.+|. .+.... .-.|+......+....
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~--~~~~~~--------------------------------~~~t~~~~~~~~~~~~ 56 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLK--LGESVT--------------------------------TIPTIGFNVETVTYKN 56 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHh--cCCCCC--------------------------------cCCccccceEEEEECC
Confidence 345899999999999999999983 121100 0011111122344567
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 235 (513)
..+.|+||||+.+|...+...++.+|++|+|+|++.... + ....+.+..+.. .++| ++|+.||+|+...
T Consensus 57 ~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s---~---~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~ 129 (175)
T smart00177 57 ISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDR---I---DEAREELHRMLNEDELRDAV-ILVFANKQDLPDA 129 (175)
T ss_pred EEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHH---H---HHHHHHHHHHhhCHhhcCCc-EEEEEeCcCcccC
Confidence 899999999999998888888899999999999886421 1 133444433321 2567 9999999998432
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.+. .++.+.+. ..... ...+.++++||++|.|+.++++
T Consensus 130 -~~~---~~i~~~~~----~~~~~-~~~~~~~~~Sa~~g~gv~e~~~ 167 (175)
T smart00177 130 -MKA---AEITEKLG----LHSIR-DRNWYIQPTCATSGDGLYEGLT 167 (175)
T ss_pred -CCH---HHHHHHhC----ccccC-CCcEEEEEeeCCCCCCHHHHHH
Confidence 121 12222221 10011 1245688999999999998643
No 175
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.64 E-value=1.3e-15 Score=139.30 Aligned_cols=151 Identities=16% Similarity=0.175 Sum_probs=94.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
.+|+++|++++|||||+++|.. +..... .....|.........+......+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~--~~~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~l 53 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTE--KKFMAD---------------------------CPHTIGVEFGTRIIEVNGQKIKL 53 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhc--CCCCCC---------------------------CCcccceeEEEEEEEECCEEEEE
Confidence 6899999999999999999842 211110 00001222222222222234578
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCCchH
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~~~~ 239 (513)
.|+||||++.|...+...++.+|++|+|+|+++... |+ ...+.+..... .+.| ++++.||+|+.... .
T Consensus 54 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-iiiv~nK~Dl~~~~--~ 124 (166)
T cd04122 54 QIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---YN---HLSSWLTDARNLTNPNTV-IFLIGNKADLEAQR--D 124 (166)
T ss_pred EEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccccc--C
Confidence 999999999998888888899999999999987521 11 22233333322 2456 89999999984321 1
Q ss_pred HHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
. ..++...+.+.. .++++++||++|.|+.+++
T Consensus 125 ~----~~~~~~~~~~~~------~~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 125 V----TYEEAKQFADEN------GLLFLECSAKTGENVEDAF 156 (166)
T ss_pred c----CHHHHHHHHHHc------CCEEEEEECCCCCCHHHHH
Confidence 0 112222333333 3589999999999999863
No 176
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.63 E-value=1.4e-15 Score=123.36 Aligned_cols=81 Identities=32% Similarity=0.479 Sum_probs=76.8
Q ss_pred ceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC----cEEEEEEEEECCeeecccCCCCeEEEEeccCCcccce
Q 010318 312 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK----AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDIL 385 (513)
Q Consensus 312 ~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~----~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~ 385 (513)
|+|+|+++| ++.|++++|+|.+|++++||+++++|.+ ..++|++|++++.++++|.|||+|+++|++++..+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~~~~~~~~a~aGd~v~l~l~~i~~~~i~ 80 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHRNRSPVRVVRAGQSASLALKKIDRSLLR 80 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEECCeECCEECCCCEEEEEEcCCCHHHcC
Confidence 579999999 6899999999999999999999999984 6899999999999999999999999999999999999
Q ss_pred eeeEEcc
Q 010318 386 SGFVLSS 392 (513)
Q Consensus 386 ~G~vl~~ 392 (513)
+|++||+
T Consensus 81 ~G~vl~~ 87 (87)
T cd03694 81 KGMVLVS 87 (87)
T ss_pred CccEEeC
Confidence 9999984
No 177
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.63 E-value=2.3e-15 Score=152.23 Aligned_cols=156 Identities=20% Similarity=0.173 Sum_probs=95.3
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
-+-...|+++|.+|+|||||+++|......+. .....|.......+.+.
T Consensus 154 lk~~adV~lvG~pnaGKSTLl~~lt~~~~~va-------------------------------~y~fTT~~p~ig~v~~~ 202 (329)
T TIGR02729 154 LKLLADVGLVGLPNAGKSTLISAVSAAKPKIA-------------------------------DYPFTTLVPNLGVVRVD 202 (329)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHhcCCcccc-------------------------------CCCCCccCCEEEEEEeC
Confidence 45567899999999999999999943211110 00223333333344555
Q ss_pred C-eEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEE
Q 010318 159 T-TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLL 225 (513)
Q Consensus 159 ~-~~i~liDtPGh~~-------f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~iv 225 (513)
+ ..|.|+||||+.. .....++.+..+|++|+|+|++.......++ +.......+.. .+.| ++|
T Consensus 203 ~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e---~l~~l~~EL~~~~~~l~~kp-~II 278 (329)
T TIGR02729 203 DGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIE---DYEIIRNELKKYSPELAEKP-RIV 278 (329)
T ss_pred CceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHH---HHHHHHHHHHHhhhhhccCC-EEE
Confidence 5 8999999999742 3345566677899999999998641100010 11112222222 3567 889
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 226 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 226 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+||+|+... ...+++.+.+. ..++ .+++++||+++.|+.++++
T Consensus 279 V~NK~DL~~~----~~~~~~~~~l~---~~~~------~~vi~iSAktg~GI~eL~~ 322 (329)
T TIGR02729 279 VLNKIDLLDE----EELAELLKELK---KALG------KPVFPISALTGEGLDELLY 322 (329)
T ss_pred EEeCccCCCh----HHHHHHHHHHH---HHcC------CcEEEEEccCCcCHHHHHH
Confidence 9999998422 22233333222 2222 4799999999999998643
No 178
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=2.6e-15 Score=157.63 Aligned_cols=160 Identities=19% Similarity=0.178 Sum_probs=100.4
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
+-+-...|+++|.||+|||||+++|....-.+ ....+.|+......+..
T Consensus 155 eLk~~adV~LVG~PNAGKSTLln~Ls~akpkI-------------------------------adypfTTl~P~lGvv~~ 203 (500)
T PRK12296 155 ELKSVADVGLVGFPSAGKSSLISALSAAKPKI-------------------------------ADYPFTTLVPNLGVVQA 203 (500)
T ss_pred EecccceEEEEEcCCCCHHHHHHHHhcCCccc-------------------------------cccCcccccceEEEEEE
Confidence 34556789999999999999999994322111 11155676666666777
Q ss_pred CCeEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCccc-ccccCCcchHHHH-HHH----------HHc
Q 010318 158 ETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFE-TGFEKGGQTREHV-MLA----------KTL 218 (513)
Q Consensus 158 ~~~~i~liDtPGh~~-------f~~~~~~~~~~~D~~ilVVda~~g~~e-~~~~~~~qt~e~l-~~~----------~~~ 218 (513)
.+..|+|+||||... .....++.+..||++|+|||++..... ..++--....+.| .+. ...
T Consensus 204 ~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~ 283 (500)
T PRK12296 204 GDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLA 283 (500)
T ss_pred CCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhc
Confidence 888999999999532 123345567889999999999742100 0000000111112 122 224
Q ss_pred CCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 219 GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 219 ~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+.| +|||+||+|++.. . .+.+.+...+...+ ++++++||++|.|+.+++.
T Consensus 284 ~kP-~IVVlNKiDL~da---~----el~e~l~~~l~~~g------~~Vf~ISA~tgeGLdEL~~ 333 (500)
T PRK12296 284 ERP-RLVVLNKIDVPDA---R----ELAEFVRPELEARG------WPVFEVSAASREGLRELSF 333 (500)
T ss_pred CCC-EEEEEECccchhh---H----HHHHHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 677 8899999998422 1 12222333343333 4799999999999999765
No 179
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.63 E-value=2.8e-15 Score=136.06 Aligned_cols=148 Identities=22% Similarity=0.247 Sum_probs=93.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEe--eeEEEEeCCe
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV--GRAHFETETT 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~--~~~~~~~~~~ 160 (513)
.+|+++|.+|+|||||+++|+... .... . .+.+.+. ....+.....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~--~~~~------------------------~------~~~~~~~~~~~~~~~~~~~ 48 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDE--FVED------------------------Y------EPTKADSYRKKVVLDGEDV 48 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--Cccc------------------------c------CCcchhhEEEEEEECCEEE
Confidence 379999999999999999995321 1100 0 0000000 0112222346
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH-HHHHH---cCCCeEEEEEeeccCCCCC
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT---LGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l-~~~~~---~~ip~~ivviNK~D~~~~~ 236 (513)
.+.|+||||+.+|.......++.+|++++|+|...... |. ...+.+ .+.+. .++| +++|+||+|+....
T Consensus 49 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iiiv~NK~D~~~~~ 121 (164)
T cd04139 49 QLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMES---FT---ATAEFREQILRVKDDDNVP-LLLVGNKCDLEDKR 121 (164)
T ss_pred EEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEcccccccc
Confidence 79999999999999988888999999999999876421 11 112222 22222 4788 99999999984311
Q ss_pred -chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 -WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 -~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
-.... ...+.+.++ ++++++||++|.|+.+++.
T Consensus 122 ~~~~~~-------~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 155 (164)
T cd04139 122 QVSSEE-------AANLARQWG------VPYVETSAKTRQNVEKAFY 155 (164)
T ss_pred ccCHHH-------HHHHHHHhC------CeEEEeeCCCCCCHHHHHH
Confidence 11111 112223332 4799999999999999644
No 180
>PLN03118 Rab family protein; Provisional
Probab=99.63 E-value=5.7e-15 Score=140.74 Aligned_cols=154 Identities=19% Similarity=0.195 Sum_probs=96.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
+..++|+++|++++|||||+++|+... +.. .....|.+.......+....
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~--~~~----------------------------~~~t~~~~~~~~~~~~~~~~ 61 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSS--VED----------------------------LAPTIGVDFKIKQLTVGGKR 61 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCC--CCC----------------------------cCCCceeEEEEEEEEECCEE
Confidence 346899999999999999999995321 100 00112222222222232234
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH-HHHHH----cCCCeEEEEEeeccCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT----LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l-~~~~~----~~ip~~ivviNK~D~~~ 234 (513)
..+.|+||||+++|.......++.+|++|+|+|+..... |. ...+.+ ..+.. .++| +|+|.||+|+..
T Consensus 62 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~s---f~---~~~~~~~~~~~~~~~~~~~~-~ilv~NK~Dl~~ 134 (211)
T PLN03118 62 LKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRET---FT---NLSDVWGKEVELYSTNQDCV-KMLVGNKVDRES 134 (211)
T ss_pred EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECccccc
Confidence 678999999999999888888999999999999987521 11 111111 11221 2567 889999999842
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. ... .++...+.... .++++++||++|.|+.++++
T Consensus 135 ~~--~i~----~~~~~~~~~~~------~~~~~e~SAk~~~~v~~l~~ 170 (211)
T PLN03118 135 ER--DVS----REEGMALAKEH------GCLFLECSAKTRENVEQCFE 170 (211)
T ss_pred cC--ccC----HHHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 21 100 11122223332 24799999999999999754
No 181
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.63 E-value=1.5e-15 Score=137.50 Aligned_cols=148 Identities=18% Similarity=0.160 Sum_probs=96.1
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
+|+++|++++|||||+++|..... .. .....|++ ...+......+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~--~~----------------------------~~~t~~~~----~~~~~~~~~~~~ 46 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV--VT----------------------------TIPTIGFN----VETVEYKNVSFT 46 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC--CC----------------------------CCCCcCcc----eEEEEECCEEEE
Confidence 489999999999999999953320 00 00011222 233555678999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCCCCchH
Q 010318 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
|+|+||+..|.......+..+|++++|+|+..+.. + ......+..+. ..+.| +++++||+|+....
T Consensus 47 i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~--- 116 (158)
T cd00878 47 VWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRER---I---EEAKEELHKLLNEEELKGVP-LLIFANKQDLPGAL--- 116 (158)
T ss_pred EEECCCChhhHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCcccCCCc-EEEEeeccCCcccc---
Confidence 99999999998777777889999999999997521 0 12223332222 24677 99999999994321
Q ss_pred HHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
..+++.+.+.... .. ...++++++||++|.|+.+++
T Consensus 117 -~~~~~~~~~~~~~----~~-~~~~~~~~~Sa~~~~gv~~~~ 152 (158)
T cd00878 117 -SVSELIEKLGLEK----IL-GRRWHIQPCSAVTGDGLDEGL 152 (158)
T ss_pred -CHHHHHHhhChhh----cc-CCcEEEEEeeCCCCCCHHHHH
Confidence 1223333222111 11 124689999999999999853
No 182
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.63 E-value=6.1e-15 Score=135.45 Aligned_cols=149 Identities=15% Similarity=0.133 Sum_probs=91.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 159 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-- 159 (513)
..+|+++|++|+|||||+++++. +... .+....+..+.....+..++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~--~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 50 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA--GRFP-----------------------------ERTEATIGVDFRERTVEIDGER 50 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh--CCCC-----------------------------CccccceeEEEEEEEEEECCeE
Confidence 57899999999999999999842 2111 01112222333333344444
Q ss_pred eEEEEEeCCCCcchHH-HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCC
Q 010318 160 TRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~-~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~ 234 (513)
..+.|+||||+++|.. ......+.+|++++|+|++.... |+ .....+..+.. .++| +|++.||+|+..
T Consensus 51 ~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~ 123 (170)
T cd04115 51 IKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMAS---FH---SLPSWIEECEQHSLPNEVP-RILVGNKCDLRE 123 (170)
T ss_pred EEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHH---HH---hHHHHHHHHHHhcCCCCCC-EEEEEECccchh
Confidence 6789999999999864 34455789999999999987532 11 22233333333 2478 899999999832
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccc---ccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM---GLNMKTR 280 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~---g~gi~~l 280 (513)
... .. .++...+.+.. .++++++||++ +.|+.++
T Consensus 124 ~~~---~~---~~~~~~~~~~~------~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 124 QIQ---VP---TDLAQRFADAH------SMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred hcC---CC---HHHHHHHHHHc------CCcEEEEeccCCcCCCCHHHH
Confidence 210 00 11112222222 35799999999 6666664
No 183
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=4.8e-15 Score=153.79 Aligned_cols=152 Identities=22% Similarity=0.232 Sum_probs=96.2
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC-
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~- 158 (513)
+-...|+++|.+|+|||||+++|......+. ...+.|.......+.+.
T Consensus 156 k~~adVglVG~pNaGKSTLLn~Lt~ak~kIa-------------------------------~ypfTTl~PnlG~v~~~~ 204 (424)
T PRK12297 156 KLLADVGLVGFPNVGKSTLLSVVSNAKPKIA-------------------------------NYHFTTLVPNLGVVETDD 204 (424)
T ss_pred cccCcEEEEcCCCCCHHHHHHHHHcCCCccc-------------------------------cCCcceeceEEEEEEEeC
Confidence 4456899999999999999999943221111 11445555555556655
Q ss_pred CeEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEEE
Q 010318 159 TTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLV 226 (513)
Q Consensus 159 ~~~i~liDtPGh~~-------f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ivv 226 (513)
+..|+|+|+||... .....++.+..+|++|+|||++.......+ .........+.. .+.| +|||
T Consensus 205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~---e~~~~i~~EL~~y~~~L~~kP-~IVV 280 (424)
T PRK12297 205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPI---EDYEKINKELKLYNPRLLERP-QIVV 280 (424)
T ss_pred CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChH---HHHHHHHHHHhhhchhccCCc-EEEE
Confidence 78899999999632 234456667789999999999742100000 012222223332 3677 8899
Q ss_pred EeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 227 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 227 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+||+|+.. ....++. +.+.++ .+++++||++|.|+.++++
T Consensus 281 ~NK~DL~~---~~e~l~~-------l~~~l~------~~i~~iSA~tgeGI~eL~~ 320 (424)
T PRK12297 281 ANKMDLPE---AEENLEE-------FKEKLG------PKVFPISALTGQGLDELLY 320 (424)
T ss_pred EeCCCCcC---CHHHHHH-------HHHHhC------CcEEEEeCCCCCCHHHHHH
Confidence 99999832 1222222 222222 3799999999999999755
No 184
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.63 E-value=7.3e-15 Score=133.37 Aligned_cols=149 Identities=19% Similarity=0.157 Sum_probs=91.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--Ce
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~ 160 (513)
.+|+++|.+|+|||||+++++. +..... . ...+.+.....+..+ ..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~--~~~~~~------------------------~------~~t~~~~~~~~~~~~~~~~ 49 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQ--GIFVEK------------------------Y------DPTIEDSYRKQIEVDGQQC 49 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCcc------------------------c------CCchhhhEEEEEEECCEEE
Confidence 5899999999999999999853 211110 0 000000001122223 35
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCC
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~ 236 (513)
.+.|+||||+++|...+...++.+|++++|+|.++... |+ .....+..+.. .++| +|++.||+|+...
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~- 121 (163)
T cd04136 50 MLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSS---FN---DLQDLREQILRVKDTENVP-MVLVGNKCDLEDE- 121 (163)
T ss_pred EEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECcccccc-
Confidence 67899999999998887777889999999999886421 11 22222222322 2578 8999999998321
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.... .++...+.+.. ..+++++||++|.|+.++++
T Consensus 122 -~~~~----~~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04136 122 -RVVS----REEGQALARQW------GCPFYETSAKSKINVDEVFA 156 (163)
T ss_pred -ceec----HHHHHHHHHHc------CCeEEEecCCCCCCHHHHHH
Confidence 1100 11122222222 25899999999999998643
No 185
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.63 E-value=3.7e-15 Score=156.37 Aligned_cols=145 Identities=22% Similarity=0.280 Sum_probs=100.9
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
++.++|+++|++|+|||||+|+|+.....+.. ...|.|.+.....+.+++
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs------------------------------~~pgtTrd~~~~~i~~~g 250 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVS------------------------------DIKGTTRDVVEGDFELNG 250 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccC------------------------------CCCCcEEEEEEEEEEECC
Confidence 45689999999999999999999643322111 127888888888888899
Q ss_pred eEEEEEeCCCCcchHH--------HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 160 TRFTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~--------~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
..+.|+||||++++.. .....+..+|++|+|+|++.+.. .... .+..+...++| +|+|+||+|
T Consensus 251 ~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s-------~~~~-~l~~~~~~~~p-iIlV~NK~D 321 (442)
T TIGR00450 251 ILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLT-------KDDF-LIIDLNKSKKP-FILVLNKID 321 (442)
T ss_pred EEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCC-------hhHH-HHHHHhhCCCC-EEEEEECcc
Confidence 9999999999865432 23456789999999999987631 1222 34444445788 899999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+... + .+ .+.+.+ ..+++++||++ .|+.++++
T Consensus 322 l~~~--~---~~-------~~~~~~------~~~~~~vSak~-~gI~~~~~ 353 (442)
T TIGR00450 322 LKIN--S---LE-------FFVSSK------VLNSSNLSAKQ-LKIKALVD 353 (442)
T ss_pred CCCc--c---hh-------hhhhhc------CCceEEEEEec-CCHHHHHH
Confidence 8322 1 11 111222 24689999998 57776544
No 186
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.62 E-value=1.5e-14 Score=139.05 Aligned_cols=166 Identities=20% Similarity=0.241 Sum_probs=114.3
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcC-cEEEeeeEEEEe
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKG-KTVEVGRAHFET 157 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g-iTi~~~~~~~~~ 157 (513)
..+...|+++|++|+|||||++.|+....... .....| +++ +..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~-----------------------------~~~~~g~i~i------~~~ 80 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQN-----------------------------ISDIKGPITV------VTG 80 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCc-----------------------------cccccccEEE------Eec
Confidence 45678899999999999999999964321100 001123 221 234
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
.+.+++|+||||+. ..++..+..+|++++|+|+..+. ..++.+.+..+...++|.+|+++||+|+..
T Consensus 81 ~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~-------~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~--- 147 (225)
T cd01882 81 KKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGF-------EMETFEFLNILQVHGFPRVMGVLTHLDLFK--- 147 (225)
T ss_pred CCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCC-------CHHHHHHHHHHHHcCCCeEEEEEeccccCC---
Confidence 67899999999964 66677789999999999999874 357888888888889996666999999842
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCC
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEIT 304 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~ 304 (513)
....++++...++..+...-+. ..+++++||++.-. .+|-++..|...++.+...
T Consensus 148 ~~~~~~~~~~~l~~~~~~~~~~---~~ki~~iSa~~~~~---------~~~~e~~~~~r~i~~~~~~ 202 (225)
T cd01882 148 KNKTLRKTKKRLKHRFWTEVYQ---GAKLFYLSGIVHGR---------YPKTEIHNLARFISVMKFR 202 (225)
T ss_pred cHHHHHHHHHHHHHHHHHhhCC---CCcEEEEeeccCCC---------CCHHHHHHHHHHHHhCCCC
Confidence 2334556666666633311121 45899999987643 3455555677777776543
No 187
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.62 E-value=3.4e-15 Score=139.99 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=94.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--e
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~ 160 (513)
++|+++|.+++|||||+++|+. +...... .....|.+... ..+..++ .
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~--~~~~~~~--------------------------~~~t~~~~~~~--~~~~~~~~~~ 50 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVH--HRFLVGP--------------------------YQNTIGAAFVA--KRMVVGERVV 50 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCcCCcC--------------------------cccceeeEEEE--EEEEECCEEE
Confidence 4799999999999999999953 2111000 00001222211 2233343 4
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCCCch
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~~~~ 238 (513)
.+.|+||||+++|.......++.+|++|+|+|+++... |+ .....+..++.. ++| +++|.||+|+......
T Consensus 51 ~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~~~ 123 (193)
T cd04118 51 TLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSS---FE---RAKFWVKELQNLEEHCK-IYLCGTKSDLIEQDRS 123 (193)
T ss_pred EEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHhcCCCCC-EEEEEEcccccccccc
Confidence 57799999999887777667789999999999986421 11 122333334433 578 9999999998422100
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.... ...++..+.... .++++++||++|.|+.++++
T Consensus 124 ~~~v--~~~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 124 LRQV--DFHDVQDFADEI------KAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred cCcc--CHHHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 0000 012233333333 24789999999999998755
No 188
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.62 E-value=2e-15 Score=138.79 Aligned_cols=152 Identities=16% Similarity=0.218 Sum_probs=97.0
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+..+|+++|++|+|||||+++|....- . ......|.++ ..+...+
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~--~----------------------------~~~~t~g~~~----~~i~~~~ 57 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDI--S----------------------------HITPTQGFNI----KTVQSDG 57 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCC--c----------------------------ccCCCCCcce----EEEEECC
Confidence 3468899999999999999999842110 0 0001123322 2345567
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHH----HHHcCCCeEEEEEeeccCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----AKTLGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~----~~~~~ip~~ivviNK~D~~~~ 235 (513)
..+.++|+||+..|...+...++.+|++++|+|+..... + ......+.. ....++| +++++||+|+...
T Consensus 58 ~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 130 (173)
T cd04155 58 FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKR---L---EEAGAELVELLEEEKLAGVP-VLVFANKQDLATA 130 (173)
T ss_pred EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhChhhcCCC-EEEEEECCCCccC
Confidence 899999999999988877777889999999999986311 1 122222222 2234688 8999999998432
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
. ..+++.+.+ ....+. ....+++++||++|.|+.+++
T Consensus 131 ~----~~~~i~~~l----~~~~~~-~~~~~~~~~Sa~~~~gi~~~~ 167 (173)
T cd04155 131 A----PAEEIAEAL----NLHDLR-DRTWHIQACSAKTGEGLQEGM 167 (173)
T ss_pred C----CHHHHHHHc----CCcccC-CCeEEEEEeECCCCCCHHHHH
Confidence 1 122222222 111111 123568899999999999853
No 189
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.62 E-value=3.1e-15 Score=140.10 Aligned_cols=148 Identities=16% Similarity=0.206 Sum_probs=92.0
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--eE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 161 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~ 161 (513)
+|+++|.+|+|||||+++|.. +.+.... .+. .+... ...+..++ ..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~--~~f~~~~------------------------~~t---~~~~~---~~~~~~~~~~~~ 48 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCL--NHFVETY------------------------DPT---IEDSY---RKQVVVDGQPCM 48 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCCCccC------------------------CCc---hHhhE---EEEEEECCEEEE
Confidence 489999999999999999852 2221100 000 00000 01122233 45
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH------cCCCeEEEEEeeccCCCC
Q 010318 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 162 i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~------~~ip~~ivviNK~D~~~~ 235 (513)
+.|+||||+++|.......++.+|++|+|+|.+.... |+ .....+..+.. .++| +|+|.||+|+...
T Consensus 49 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilvgNK~Dl~~~ 121 (190)
T cd04144 49 LEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRST---FE---RVERFREQIQRVKDESAADVP-IMIVGNKCDKVYE 121 (190)
T ss_pred EEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcccCCCCC-EEEEEEChhcccc
Confidence 8899999999999888888999999999999987532 11 22222222222 3577 8999999998421
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
..... .+...+....+ ++++++||++|.|+.+++.
T Consensus 122 --~~v~~----~~~~~~~~~~~------~~~~e~SAk~~~~v~~l~~ 156 (190)
T cd04144 122 --REVST----EEGAALARRLG------CEFIEASAKTNVNVERAFY 156 (190)
T ss_pred --CccCH----HHHHHHHHHhC------CEEEEecCCCCCCHHHHHH
Confidence 11001 11222233332 4799999999999999754
No 190
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.62 E-value=1.6e-14 Score=138.07 Aligned_cols=150 Identities=15% Similarity=0.129 Sum_probs=94.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC---C
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE---T 159 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~ 159 (513)
++|+++|.+++|||||+++|... .+.. ....-++.+.....+... .
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~--~~~~-----------------------------~~~~T~~~d~~~~~i~~~~~~~ 49 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKE--GFGK-----------------------------SYKQTIGLDFFSKRVTLPGNLN 49 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcC--CCCC-----------------------------CCCCceeEEEEEEEEEeCCCCE
Confidence 36999999999999999999421 1110 001222233322333332 4
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc------CCCeEEEEEeeccCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------GVTKLLLVVNKMDDH 233 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~------~ip~~ivviNK~D~~ 233 (513)
..+.|+||||++.|.......++.+|++|+|+|+++... |+ ...+.+..+... +.| +|+|.||+|+.
T Consensus 50 ~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s---~~---~~~~w~~~l~~~~~~~~~~~p-iilVgNK~DL~ 122 (215)
T cd04109 50 VTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQS---FE---NLEDWYSMVRKVLKSSETQPL-VVLVGNKTDLE 122 (215)
T ss_pred EEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhccccCCCce-EEEEEECcccc
Confidence 678999999999988877778899999999999987521 11 222223333322 235 88999999984
Q ss_pred CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. .+ ...++...+.+..+ ++++++||++|.|+.++++
T Consensus 123 ~~--~~----v~~~~~~~~~~~~~------~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 123 HN--RT----VKDDKHARFAQANG------MESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred cc--cc----cCHHHHHHHHHHcC------CEEEEEECCCCCCHHHHHH
Confidence 21 11 11122223333333 4789999999999999754
No 191
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.62 E-value=4e-15 Score=138.45 Aligned_cols=153 Identities=19% Similarity=0.218 Sum_probs=97.0
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
++..+|+++|.+++|||||+.++. .+.... .....|..+ ..+...+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~--~~~~~~----------------------------~~~T~~~~~----~~~~~~~ 60 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLK--LGEVVT----------------------------TIPTIGFNV----ETVEYKN 60 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHh--cCCccc----------------------------cCCccccce----EEEEECC
Confidence 345789999999999999999883 221100 000122221 2344577
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-HH---cCCCeEEEEEeeccCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KT---LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~-~~---~~ip~~ivviNK~D~~~~ 235 (513)
..+.|+||||+++|...+...++.+|++|+|+|+++... +. ...+.+... .. ..+| ++|+.||.|++..
T Consensus 61 ~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s---~~---~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~~ 133 (182)
T PTZ00133 61 LKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRER---IG---DAREELERMLSEDELRDAV-LLVFANKQDLPNA 133 (182)
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHhCHhhcCCC-EEEEEeCCCCCCC
Confidence 899999999999998888888899999999999976310 11 223233222 21 2466 9999999998432
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. +. .++...+ ....+. ...+.++++||++|.|+.++++
T Consensus 134 ~-~~---~~i~~~l----~~~~~~-~~~~~~~~~Sa~tg~gv~e~~~ 171 (182)
T PTZ00133 134 M-ST---TEVTEKL----GLHSVR-QRNWYIQGCCATTAQGLYEGLD 171 (182)
T ss_pred C-CH---HHHHHHh----CCCccc-CCcEEEEeeeCCCCCCHHHHHH
Confidence 1 11 1222222 111111 1235778999999999998654
No 192
>PTZ00369 Ras-like protein; Provisional
Probab=99.62 E-value=5.8e-15 Score=138.17 Aligned_cols=153 Identities=19% Similarity=0.146 Sum_probs=95.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
+..+|+++|++|+|||||+++++.. ...... . ...|.+. .....+.....
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~--~~~~~~------------------------~---~t~~~~~-~~~~~~~~~~~ 53 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQN--HFIDEY------------------------D---PTIEDSY-RKQCVIDEETC 53 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC--CCCcCc------------------------C---CchhhEE-EEEEEECCEEE
Confidence 3589999999999999999998532 111000 0 0011111 11112233345
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCC
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~ 236 (513)
.+.|+||||+++|...+...++.+|++|+|+|+++... |+ .....+..+.. .++| +|++.||+|+....
T Consensus 54 ~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s---~~---~~~~~~~~i~~~~~~~~~p-iiiv~nK~Dl~~~~ 126 (189)
T PTZ00369 54 LLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSS---FE---EIASFREQILRVKDKDRVP-MILVGNKCDLDSER 126 (189)
T ss_pred EEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccccccc
Confidence 68899999999999988888899999999999987531 11 22222222222 2678 99999999984211
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.-. ..+...+.+.. .++++++||++|.|+.+++.
T Consensus 127 --~i~----~~~~~~~~~~~------~~~~~e~Sak~~~gi~~~~~ 160 (189)
T PTZ00369 127 --QVS----TGEGQELAKSF------GIPFLETSAKQRVNVDEAFY 160 (189)
T ss_pred --ccC----HHHHHHHHHHh------CCEEEEeeCCCCCCHHHHHH
Confidence 000 01112222332 24799999999999998654
No 193
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.62 E-value=3.8e-15 Score=140.64 Aligned_cols=151 Identities=21% Similarity=0.201 Sum_probs=97.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--e
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~ 160 (513)
+.|+++|..++|||||+.++.. +.... +....++.+.....+..++ .
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~--~~f~~-----------------------------~~~~Ti~~~~~~~~i~~~~~~v 49 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTD--DTFCE-----------------------------ACKSGVGVDFKIKTVELRGKKI 49 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHh--CCCCC-----------------------------cCCCcceeEEEEEEEEECCEEE
Confidence 3689999999999999998842 22111 1112223333333455554 6
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCCc
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~~ 237 (513)
.+.|+||+|+++|...+...++.+|++|+|+|.++... |+ .....+..++. .++| +|+|.||+|+...
T Consensus 50 ~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~S---f~---~l~~w~~~i~~~~~~~~p-iilVgNK~DL~~~-- 120 (202)
T cd04120 50 RLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET---FD---DLPKWMKMIDKYASEDAE-LLLVGNKLDCETD-- 120 (202)
T ss_pred EEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEECcccccc--
Confidence 78999999999999888888999999999999997532 21 22222333333 2577 8999999998321
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.+. ...+...+.++. ..+.++.+||++|.|+.+++.
T Consensus 121 ~~v----~~~~~~~~a~~~-----~~~~~~etSAktg~gV~e~F~ 156 (202)
T cd04120 121 REI----SRQQGEKFAQQI-----TGMRFCEASAKDNFNVDEIFL 156 (202)
T ss_pred ccc----CHHHHHHHHHhc-----CCCEEEEecCCCCCCHHHHHH
Confidence 110 011122222222 135799999999999999754
No 194
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.62 E-value=6.8e-15 Score=132.18 Aligned_cols=148 Identities=18% Similarity=0.176 Sum_probs=93.9
Q ss_pred EEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEEE
Q 010318 85 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 164 (513)
Q Consensus 85 v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~l 164 (513)
|+++|++|+|||||+++|.... ... +..+.+. .....+...+..+.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~--~~~-----------------------------~~~~t~~--~~~~~~~~~~~~~~~ 48 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ--FSE-----------------------------DTIPTVG--FNMRKVTKGNVTLKV 48 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC--CCc-----------------------------CccCCCC--cceEEEEECCEEEEE
Confidence 7899999999999999994321 000 0001111 112234456688999
Q ss_pred EeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCCCCchHH
Q 010318 165 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSKE 240 (513)
Q Consensus 165 iDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~~~~~~ 240 (513)
+|+||+..|...+...+..+|++++|+|+..... + .+..+.+..+. ..++| +++++||+|+....
T Consensus 49 ~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~---- 117 (159)
T cd04159 49 WDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTA---L---EAAKNELHDLLEKPSLEGIP-LLVLGNKNDLPGAL---- 117 (159)
T ss_pred EECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHcChhhcCCC-EEEEEeCccccCCc----
Confidence 9999999999888888999999999999986311 0 12233333322 24678 89999999984321
Q ss_pred HHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 241 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
...++...+. +.... ...++++++|+++|.|+.+++
T Consensus 118 ~~~~~~~~~~--~~~~~---~~~~~~~~~Sa~~~~gi~~l~ 153 (159)
T cd04159 118 SVDELIEQMN--LKSIT---DREVSCYSISCKEKTNIDIVL 153 (159)
T ss_pred CHHHHHHHhC--ccccc---CCceEEEEEEeccCCChHHHH
Confidence 1112222111 01111 124689999999999999853
No 195
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.62 E-value=7.4e-15 Score=138.50 Aligned_cols=150 Identities=19% Similarity=0.213 Sum_probs=91.5
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--eE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 161 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~ 161 (513)
+|+++|+.|+|||||+++|+.. ..... ....+.+.....+...+ ..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~~~~~~ 48 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYD--TFEPK------------------------------YRRTVEEMHRKEYEVGGVSLT 48 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhC--CCCcc------------------------------CCCchhhheeEEEEECCEEEE
Confidence 4899999999999999999532 11100 00000011112233334 57
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCCCCc
Q 010318 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 162 i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~~~ 237 (513)
+.|+||||+.+|.......+..+|++|+|+|+.+... |+ .....+..+. ..++| +|+++||+|+....
T Consensus 49 l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~- 120 (198)
T cd04147 49 LDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPES---FE---EVERLREEILEVKEDKFVP-IVVVGNKADSLEEE- 120 (198)
T ss_pred EEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEEcccccccc-
Confidence 8999999999998877777889999999999987521 11 1111111122 14688 89999999984321
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.....+... .... ..+ ..+++++||++|.|+.++++
T Consensus 121 ~~v~~~~~~----~~~~-~~~----~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 121 RQVPAKDAL----STVE-LDW----NCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred ccccHHHHH----HHHH-hhc----CCcEEEecCCCCCCHHHHHH
Confidence 111111111 1111 111 24789999999999998754
No 196
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.62 E-value=7.2e-15 Score=135.14 Aligned_cols=151 Identities=18% Similarity=0.180 Sum_probs=94.3
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--CeE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TTR 161 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~ 161 (513)
+|+++|..++|||||+++++.. .... +....+..+.....+... ...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~--~f~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 50 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKD--VFDK-----------------------------NYKATIGVDFEMERFEILGVPFS 50 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCC-----------------------------CCCCceeeEEEEEEEEECCEEEE
Confidence 5899999999999999999532 1110 001112222222233333 357
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC----CCeEEEEEeeccCCCCCc
Q 010318 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG----VTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 162 i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~----ip~~ivviNK~D~~~~~~ 237 (513)
+.|+||||+++|...+...++.+|++|+|+|+..... + ....+.+..+.... .| +|+|.||+|+....
T Consensus 51 l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~-iilVgnK~Dl~~~~- 122 (170)
T cd04108 51 LQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVAS---L---EHTRQWLEDALKENDPSSVL-LFLVGTKKDLSSPA- 122 (170)
T ss_pred EEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCCe-EEEEEEChhcCccc-
Confidence 9999999999998888888899999999999976421 1 12233333332222 34 88999999983221
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.......+...+.++++ .+++.+||++|.|+.+++.
T Consensus 123 ---~~~~~~~~~~~~~~~~~------~~~~e~Sa~~g~~v~~lf~ 158 (170)
T cd04108 123 ---QYALMEQDAIKLAAEMQ------AEYWSVSALSGENVREFFF 158 (170)
T ss_pred ---cccccHHHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 11111222223333332 4789999999999998754
No 197
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.61 E-value=6.3e-15 Score=133.35 Aligned_cols=149 Identities=18% Similarity=0.209 Sum_probs=92.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe--CCe
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~--~~~ 160 (513)
.+|+++|.+++|||||+++|+..... .. ..+.++.......+.. ...
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 49 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFN--EK-----------------------------HESTTQASFFQKTVNIGGKRI 49 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CC-----------------------------cCCccceeEEEEEEEECCEEE
Confidence 37999999999999999999532211 00 0011111222222222 234
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCC-
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN- 236 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~- 236 (513)
.+.++|+||++.|.......+..+|++++|+|++++.. ++ +....+..+.. .++| +++++||+|+....
T Consensus 50 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iiiv~nK~D~~~~~~ 122 (162)
T cd04123 50 DLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADS---FQ---KVKKWIKELKQMRGNNIS-LVIVGNKIDLERQRV 122 (162)
T ss_pred EEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECcccccccC
Confidence 68999999999988777777789999999999987632 11 12222222222 2577 89999999984221
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... +++..+.+..+ .+++++|+++|.|+.++++
T Consensus 123 ~~~-------~~~~~~~~~~~------~~~~~~s~~~~~gi~~~~~ 155 (162)
T cd04123 123 VSK-------SEAEEYAKSVG------AKHFETSAKTGKGIEELFL 155 (162)
T ss_pred CCH-------HHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 111 12222233332 4789999999999998643
No 198
>PRK11058 GTPase HflX; Provisional
Probab=99.61 E-value=2.4e-15 Score=156.92 Aligned_cols=150 Identities=17% Similarity=0.108 Sum_probs=93.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe-
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT- 160 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~- 160 (513)
.+.|+++|.+|+|||||+|+|......+ ....+.|.+.....+.+.+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v-------------------------------~~~~~tTld~~~~~i~l~~~~ 245 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYA-------------------------------ADQLFATLDPTLRRIDVADVG 245 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceee-------------------------------ccCCCCCcCCceEEEEeCCCC
Confidence 3689999999999999999994321110 01145566655555665554
Q ss_pred EEEEEeCCCCcch--------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 161 RFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 161 ~i~liDtPGh~~f--------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
.+.|+||||..+. +..++..+..||++|+|+|++++.+..... .+.+.+..+...++| +|+|+||+|+
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~---~v~~iL~el~~~~~p-vIiV~NKiDL 321 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIE---AVNTVLEEIDAHEIP-TLLVMNKIDM 321 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHH---HHHHHHHHhccCCCC-EEEEEEcccC
Confidence 8899999997432 223445578999999999998863210000 012223333334678 8999999998
Q ss_pred CCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... ....+ . . ...++. .++++||++|.|+.++.+
T Consensus 322 ~~~--~~~~~----~---~--~~~~~~-----~~v~ISAktG~GIdeL~e 355 (426)
T PRK11058 322 LDD--FEPRI----D---R--DEENKP-----IRVWLSAQTGAGIPLLFQ 355 (426)
T ss_pred CCc--hhHHH----H---H--HhcCCC-----ceEEEeCCCCCCHHHHHH
Confidence 321 11111 0 0 011221 258899999999998654
No 199
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.61 E-value=6.9e-15 Score=135.97 Aligned_cols=153 Identities=20% Similarity=0.272 Sum_probs=104.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
++..+|+++|..+||||||+++|. .+.+.. ...|+......+...+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~--~~~~~~--------------------------------~~pT~g~~~~~i~~~~ 57 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLK--NGEISE--------------------------------TIPTIGFNIEEIKYKG 57 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHH--SSSEEE--------------------------------EEEESSEEEEEEEETT
T ss_pred CcEEEEEEECCCccchHHHHHHhh--hccccc--------------------------------cCcccccccceeeeCc
Confidence 678999999999999999999983 221110 1123333345577789
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 235 (513)
..++|+|.+|+..+...+......+|++|+|||+++... + ...++.+..+.. .++| ++|++||+|++.+
T Consensus 58 ~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~---l---~e~~~~L~~ll~~~~~~~~p-iLIl~NK~D~~~~ 130 (175)
T PF00025_consen 58 YSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPER---L---QEAKEELKELLNDPELKDIP-ILILANKQDLPDA 130 (175)
T ss_dssp EEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGG---H---HHHHHHHHHHHTSGGGTTSE-EEEEEESTTSTTS
T ss_pred EEEEEEeccccccccccceeeccccceeEEEEeccccee---e---cccccchhhhcchhhcccce-EEEEeccccccCc
Confidence 999999999999988888888899999999999987421 1 234444433322 2577 9999999999543
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
- +.+ ++...+. +..+. ....+.++++||.+|+|+.+.+
T Consensus 131 ~-~~~---~i~~~l~--l~~l~--~~~~~~v~~~sa~~g~Gv~e~l 168 (175)
T PF00025_consen 131 M-SEE---EIKEYLG--LEKLK--NKRPWSVFSCSAKTGEGVDEGL 168 (175)
T ss_dssp S-THH---HHHHHTT--GGGTT--SSSCEEEEEEBTTTTBTHHHHH
T ss_pred c-hhh---HHHhhhh--hhhcc--cCCceEEEeeeccCCcCHHHHH
Confidence 2 222 2332221 12221 1246789999999999998853
No 200
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.61 E-value=7.5e-15 Score=134.56 Aligned_cols=148 Identities=15% Similarity=0.182 Sum_probs=95.1
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
+|+++|..++|||||+++|... .... ...|+......+...+..+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~~~-------------------------------~~~t~g~~~~~~~~~~~~~~ 46 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IPKK-------------------------------VAPTVGFTPTKLRLDKYEVC 46 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CCcc-------------------------------ccCcccceEEEEEECCEEEE
Confidence 4899999999999999988421 1100 11121122234566789999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCCchH
Q 010318 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~~~~ 239 (513)
++|+||+.+|...+...+..+|++|+|+|++.... + ...+..+..+.. .++| +++++||+|+.... +.
T Consensus 47 i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s---~---~~~~~~l~~l~~~~~~~~~p-iliv~NK~Dl~~~~-~~ 118 (167)
T cd04161 47 IFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDR---V---QEVKEILRELLQHPRVSGKP-ILVLANKQDKKNAL-LG 118 (167)
T ss_pred EEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhH---H---HHHHHHHHHHHcCccccCCc-EEEEEeCCCCcCCC-CH
Confidence 99999999998888888999999999999987421 1 122333333322 3677 99999999995432 12
Q ss_pred HHHHHHHhhh--HhhhhhccCcccCCeeEEEeecccc------cccccc
Q 010318 240 ERYDEIESKM--TPFLKASGYNVKKDVQFLPISGLMG------LNMKTR 280 (513)
Q Consensus 240 ~~~~~i~~~l--~~~l~~~g~~~~~~~~iipiSa~~g------~gi~~l 280 (513)
. ++.+.+ ..+.++.+ ..++++++||++| .|+.+-
T Consensus 119 ~---~i~~~~~l~~~~~~~~----~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 119 A---DVIEYLSLEKLVNENK----SLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred H---HHHHhcCcccccCCCC----ceEEEEEeEceeCCCCccccCHHHH
Confidence 1 222221 22221111 1468999999998 677764
No 201
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=99.61 E-value=2.4e-15 Score=122.22 Aligned_cols=83 Identities=33% Similarity=0.548 Sum_probs=77.6
Q ss_pred ceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecC--CcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceee
Q 010318 312 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN--KAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 387 (513)
Q Consensus 312 ~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~--~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G 387 (513)
|+|+|+++| ++.|++++|+|.+|++++||++.++|. +..++|++|++++.++++|.|||+|+++|++++..++.+|
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~~~~~~~~a~~G~~v~l~l~~~~~~~v~rG 80 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEMFRKTLDEAEAGDNVGVLLRGVKREDVERG 80 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEECCcCCCEECCCCEEEEEECCCCHHHcCCc
Confidence 689999999 578999999999999999999999986 5789999999999999999999999999999999999999
Q ss_pred eEEccCC
Q 010318 388 FVLSSVA 394 (513)
Q Consensus 388 ~vl~~~~ 394 (513)
++|++++
T Consensus 81 ~vl~~~~ 87 (87)
T cd03697 81 MVLAKPG 87 (87)
T ss_pred cEEecCC
Confidence 9999863
No 202
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.61 E-value=7.6e-15 Score=134.24 Aligned_cols=154 Identities=20% Similarity=0.235 Sum_probs=94.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
.+|+++|+.|+|||||+++|.. +...... +. .....++.. .+......+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~--~~~~~~~-------------------------~~-~~~~~~~~~---~~~~~~~~~ 49 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVS--EEFPENV-------------------------PR-VLPEITIPA---DVTPERVPT 49 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CcCCccC-------------------------CC-cccceEeee---eecCCeEEE
Confidence 3799999999999999999953 2211000 00 001112111 122345789
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHH--cCCCeEEEEEeeccCCCCCchH
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~-e~l~~~~~--~~ip~~ivviNK~D~~~~~~~~ 239 (513)
.|+||||+..|...+...+..+|++++|+|++.+.. |+ +.. ..+..++. .++| +++|+||+|+.... ..
T Consensus 50 ~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-viiv~nK~Dl~~~~-~~ 121 (166)
T cd01893 50 TIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPST---LE---RIRTKWLPLIRRLGVKVP-IILVGNKSDLRDGS-SQ 121 (166)
T ss_pred EEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEchhccccc-ch
Confidence 999999999888777777899999999999987531 11 111 12233333 2577 99999999994321 11
Q ss_pred HHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. ...+.+..+.+.+.. ..+++++||++|.|+.++++
T Consensus 122 ~---~~~~~~~~~~~~~~~----~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 122 A---GLEEEMLPIMNEFRE----IETCVECSAKTLINVSEVFY 157 (166)
T ss_pred h---HHHHHHHHHHHHHhc----ccEEEEeccccccCHHHHHH
Confidence 1 112222222222210 12799999999999998643
No 203
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.61 E-value=4.7e-15 Score=134.95 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=94.0
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEE-eCCeE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-TETTR 161 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~ 161 (513)
++|+++|.+++|||||+++|.......... .....|..+......+. .....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~~ 53 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKN---------------------------YLMTTGCDFVVKEVPVDTDNTVE 53 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcc---------------------------CCCceEEEEEEEEEEeCCCCEEE
Confidence 479999999999999999985321111100 00012222222222222 23478
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCCC-ch
Q 010318 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVN-WS 238 (513)
Q Consensus 162 i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~~-~~ 238 (513)
+.++||||++.|...+...+..+|++|+|+|.++... | ......+..+.. .++| +|+|+||+|+.... ..
T Consensus 54 l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~~~ 126 (164)
T cd04101 54 LFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKAS---F---ENCSRWVNKVRTASKHMP-GVLVGNKMDLADKAEVT 126 (164)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCC-EEEEEECcccccccCCC
Confidence 9999999999998888888899999999999986421 1 011222233332 3577 89999999983221 01
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... ...+.... ..+++++||++|.|+.++++
T Consensus 127 ~~~-------~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 157 (164)
T cd04101 127 DAQ-------AQAFAQAN------QLKFFKTSALRGVGYEEPFE 157 (164)
T ss_pred HHH-------HHHHHHHc------CCeEEEEeCCCCCChHHHHH
Confidence 111 11111222 24799999999999998643
No 204
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.61 E-value=5.7e-15 Score=135.22 Aligned_cols=148 Identities=18% Similarity=0.263 Sum_probs=92.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe--CCe
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--ETT 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~--~~~ 160 (513)
.+|+++|.+++|||||+++++. +..... ....+..+.....+.. ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~--~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~~~ 49 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLT--GEFEKK-----------------------------YVATLGVEVHPLDFHTNRGKI 49 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCCCC-----------------------------CCCceeeEEEEEEEEECCEEE
Confidence 3799999999999999999852 211100 0011112222222333 346
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCCCch
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~~~~ 238 (513)
.+.++||||+++|.......+..+|++|+|+|.+.+.. ++ .....+..+... ++| +|++.||+|+....
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~p-iiiv~nK~Dl~~~~-- 120 (166)
T cd00877 50 RFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVT---YK---NVPNWHRDLVRVCGNIP-IVLCGNKVDIKDRK-- 120 (166)
T ss_pred EEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCc-EEEEEEchhccccc--
Confidence 78999999999987666666788999999999987632 11 111222222222 688 99999999994211
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+..+...+.+.. ..+++++||++|.|+.++++
T Consensus 121 ------~~~~~~~~~~~~------~~~~~e~Sa~~~~~v~~~f~ 152 (166)
T cd00877 121 ------VKAKQITFHRKK------NLQYYEISAKSNYNFEKPFL 152 (166)
T ss_pred ------CCHHHHHHHHHc------CCEEEEEeCCCCCChHHHHH
Confidence 001111122221 35799999999999998654
No 205
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.61 E-value=1.4e-14 Score=135.35 Aligned_cols=152 Identities=15% Similarity=0.208 Sum_probs=100.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC-
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 159 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~- 159 (513)
..++|+++|..++|||||+.++.. +... .+....++.+.....+..++
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~--~~~~-----------------------------~~~~~t~~~~~~~~~i~~~~~ 53 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQD--GSTE-----------------------------SPYGYNMGIDYKTTTILLDGR 53 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc--CCCC-----------------------------CCCCCcceeEEEEEEEEECCE
Confidence 468999999999999999998842 2111 11112223333223333334
Q ss_pred -eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCCC
Q 010318 160 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 -~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~~ 236 (513)
..+.|+||||+++|...+....+.+|++|||+|.+.... |+ ..+..+..+.. -++| +||+.||+|+...
T Consensus 54 ~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~S---f~---~~~~w~~~i~~~~~~~p-iilVGNK~DL~~~- 125 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWS---FD---GIDRWIKEIDEHAPGVP-KILVGNRLHLAFK- 125 (189)
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECccchhc-
Confidence 678999999999999888777899999999999987532 22 22333333433 3577 8999999998321
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. -..++...+.+..+ ++++.+||++|.|+.++++
T Consensus 126 -~~----v~~~~~~~~a~~~~------~~~~e~SAk~g~~V~~~F~ 160 (189)
T cd04121 126 -RQ----VATEQAQAYAERNG------MTFFEVSPLCNFNITESFT 160 (189)
T ss_pred -cC----CCHHHHHHHHHHcC------CEEEEecCCCCCCHHHHHH
Confidence 00 11223344444443 5799999999999999754
No 206
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.61 E-value=1.6e-14 Score=136.43 Aligned_cols=152 Identities=17% Similarity=0.175 Sum_probs=97.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC-
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 159 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~- 159 (513)
..++|+++|.+|+|||||+++|+.. .... .....+..+.....+...+
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~--~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~ 53 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADN--TFSG-----------------------------SYITTIGVDFKIRTVEINGE 53 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC--CCCC-----------------------------CcCccccceeEEEEEEECCE
Confidence 3589999999999999999998421 1110 0001122222223334333
Q ss_pred -eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCCC
Q 010318 160 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 -~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~~ 236 (513)
..+.|+||||++.|...+...++.+|++|+|+|+++... |+ .....+..+... .+| ++|++||+|+....
T Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~p-iivVgNK~Dl~~~~ 126 (199)
T cd04110 54 RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGES---FV---NVKRWLQEIEQNCDDVC-KVLVGNKNDDPERK 126 (199)
T ss_pred EEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECccccccc
Confidence 568899999999998888888899999999999987521 11 223333333332 466 88999999984221
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. ....+...+.+..+ ++++++||++|.|+.++++
T Consensus 127 --~----~~~~~~~~~~~~~~------~~~~e~Sa~~~~gi~~lf~ 160 (199)
T cd04110 127 --V----VETEDAYKFAGQMG------ISLFETSAKENINVEEMFN 160 (199)
T ss_pred --c----cCHHHHHHHHHHcC------CEEEEEECCCCcCHHHHHH
Confidence 0 01122223333332 4799999999999999754
No 207
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.61 E-value=3.6e-15 Score=161.94 Aligned_cols=140 Identities=21% Similarity=0.222 Sum_probs=97.9
Q ss_pred ecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEEEEeCC
Q 010318 89 GHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTILDAP 168 (513)
Q Consensus 89 G~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDtP 168 (513)
|++|+|||||+|+|.+..-. ....+|+|++.....+++++..++++|||
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~-------------------------------v~n~pG~Tv~~~~~~i~~~~~~i~lvDtP 49 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT-------------------------------VGNWPGVTVEKKEGKLGFQGEDIEIVDLP 49 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe-------------------------------ecCCCCeEEEEEEEEEEECCeEEEEEECC
Confidence 89999999999999432110 11237899999888888889999999999
Q ss_pred CCcchHHH-----HHH---hhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHH
Q 010318 169 GHKSYVPN-----MIS---GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 240 (513)
Q Consensus 169 Gh~~f~~~-----~~~---~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~ 240 (513)
|+.+|... +.+ ....+|++++|+|+++. .+..+....+...++| +++|+||+|+....
T Consensus 50 G~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~l---------er~l~l~~ql~~~~~P-iIIVlNK~Dl~~~~---- 115 (591)
T TIGR00437 50 GIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNL---------ERNLYLTLQLLELGIP-MILALNLVDEAEKK---- 115 (591)
T ss_pred CccccCccchHHHHHHHHHhhcCCCEEEEEecCCcc---------hhhHHHHHHHHhcCCC-EEEEEehhHHHHhC----
Confidence 99887432 111 12478999999999873 1344444556667899 99999999983211
Q ss_pred HHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 241 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. ..+.+.+.+.+| ++++|+||++|.|++++.+
T Consensus 116 ~i---~~d~~~L~~~lg------~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 116 GI---RIDEEKLEERLG------VPVVPTSATEGRGIERLKD 148 (591)
T ss_pred CC---hhhHHHHHHHcC------CCEEEEECCCCCCHHHHHH
Confidence 11 111222223333 5899999999999999754
No 208
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.61 E-value=9.7e-15 Score=133.46 Aligned_cols=147 Identities=15% Similarity=0.113 Sum_probs=94.9
Q ss_pred EEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEEE
Q 010318 85 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 164 (513)
Q Consensus 85 v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~l 164 (513)
|+++|..++|||||+++|.... .... ...|+......+...+..+.|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~--~~~~-------------------------------~~pt~g~~~~~i~~~~~~l~i 48 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSER--SLES-------------------------------VVPTTGFNSVAIPTQDAIMEL 48 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--Cccc-------------------------------ccccCCcceEEEeeCCeEEEE
Confidence 7899999999999999984321 1000 001111112345567889999
Q ss_pred EeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCCCchHHHH
Q 010318 165 LDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWSKERY 242 (513)
Q Consensus 165 iDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~~~~~~~~ 242 (513)
+||||+.+|...+...++.+|++|+|+|+++... + ...++.+..+.. .++| +++|.||+|+.... . .
T Consensus 49 ~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s---~---~~~~~~l~~~~~~~~~~p-iilv~NK~Dl~~~~-~---~ 117 (164)
T cd04162 49 LEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSER---L---PLARQELHQLLQHPPDLP-LVVLANKQDLPAAR-S---V 117 (164)
T ss_pred EECCCCcchhHHHHHHHhhCCEEEEEEECCCHHH---H---HHHHHHHHHHHhCCCCCc-EEEEEeCcCCcCCC-C---H
Confidence 9999999998888888999999999999887521 1 122232332321 4678 99999999984331 1 2
Q ss_pred HHHHhh--hHhhhhhccCcccCCeeEEEeeccc------cccccccc
Q 010318 243 DEIESK--MTPFLKASGYNVKKDVQFLPISGLM------GLNMKTRV 281 (513)
Q Consensus 243 ~~i~~~--l~~~l~~~g~~~~~~~~iipiSa~~------g~gi~~l~ 281 (513)
.++.+. +..+.++ ..++++++||++ ++|+.+++
T Consensus 118 ~~i~~~~~~~~~~~~------~~~~~~~~Sa~~~~s~~~~~~v~~~~ 158 (164)
T cd04162 118 QEIHKELELEPIARG------RRWILQGTSLDDDGSPSRMEAVKDLL 158 (164)
T ss_pred HHHHHHhCChhhcCC------CceEEEEeeecCCCChhHHHHHHHHH
Confidence 222221 2222222 246889999988 89988753
No 209
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.61 E-value=2.4e-15 Score=137.68 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=93.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
++|+++|.+|+|||||+++|.... .... ..............+......+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~--~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~l 50 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGK--FPTE----------------------------YVPTVFDNYSATVTVDGKQVNL 50 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCCC----------------------------CCCceeeeeEEEEEECCEEEEE
Confidence 479999999999999999994321 1000 0000010111111222334679
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCCCchHH
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKE 240 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~~~~~~ 240 (513)
.|+||||+++|.......++.+|++++|+|+++... |. ....+.+..+... ++| +++++||+|+........
T Consensus 51 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~ 124 (171)
T cd00157 51 GLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSS---FE--NVKTKWIPEIRHYCPNVP-IILVGTKIDLRDDENTLK 124 (171)
T ss_pred EEEeCCCcccccccchhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCC-EEEEEccHHhhhchhhhh
Confidence 999999999887666666788999999999987421 11 1122233333333 477 999999999853321100
Q ss_pred H-----HHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 241 R-----YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 241 ~-----~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
. ..-..++...+....++ .+++++||++|.|+.+++
T Consensus 125 ~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~ 165 (171)
T cd00157 125 KLEKGKEPITPEEGEKLAKEIGA-----IGYMECSALTQEGVKEVF 165 (171)
T ss_pred hcccCCCccCHHHHHHHHHHhCC-----eEEEEeecCCCCCHHHHH
Confidence 0 00012223334444432 389999999999999853
No 210
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.61 E-value=4e-15 Score=136.91 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=93.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--Ce
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~ 160 (513)
++|+++|++++|||||++++.. +...... .+.+ .+.-...+..+ .+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~--~~~~~~~-----------------------------~~t~-~~~~~~~~~~~~~~~ 48 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYAN--DAFPEEY-----------------------------VPTV-FDHYAVSVTVGGKQY 48 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCCCCC-----------------------------CCce-eeeeEEEEEECCEEE
Confidence 4799999999999999998843 2111100 0000 01111122233 35
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHH--cCCCeEEEEEeeccCCCCCc
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~-e~l~~~~~--~~ip~~ivviNK~D~~~~~~ 237 (513)
.+.|+||||+.+|........+.+|++|+|+|..+... |+ ... ..+..++. .++| ++++.||+|+.....
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s---~~---~~~~~~~~~l~~~~~~~p-iivv~nK~Dl~~~~~ 121 (174)
T cd04135 49 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS---FQ---NVKEEWVPELKEYAPNVP-YLLVGTQIDLRDDPK 121 (174)
T ss_pred EEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEeEchhhhcChh
Confidence 67899999999998777777789999999999887521 11 111 11222322 4678 899999999842211
Q ss_pred hHHHHH------HHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 238 SKERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 238 ~~~~~~------~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
...... -..++...+.+.++. .+++.+||++|.|+.++++
T Consensus 122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~gi~~~f~ 167 (174)
T cd04135 122 TLARLNDMKEKPVTVEQGQKLAKEIGA-----HCYVECSALTQKGLKTVFD 167 (174)
T ss_pred hHHHHhhccCCCCCHHHHHHHHHHcCC-----CEEEEecCCcCCCHHHHHH
Confidence 110000 001223334444443 3799999999999998643
No 211
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.61 E-value=5.1e-15 Score=141.48 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=97.0
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
++|+++|.+++|||||+++|+. +.... .-.|+........+..+.+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~--~~f~~--------------------------------~~~Tig~~~~~~~~~~~~l 46 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYME--RRFKD--------------------------------TVSTVGGAFYLKQWGPYNI 46 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhc--CCCCC--------------------------------CCCccceEEEEEEeeEEEE
Confidence 4799999999999999999842 21100 0112222222233456789
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCCchH
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~~~~ 239 (513)
.|+||||++.|.......++.+|++|+|+|+++... |+ .....+..+.. .++| +|+|.||+|+... +..
T Consensus 47 ~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~S---f~---~l~~~~~~l~~~~~~~~p-iIlVgNK~DL~~~-~~~ 118 (220)
T cd04126 47 SIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQS---LE---ELEDRFLGLTDTANEDCL-FAVVGNKLDLTEE-GAL 118 (220)
T ss_pred EEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECcccccc-ccc
Confidence 999999999998888878899999999999987421 11 11122222222 2467 8999999998431 000
Q ss_pred --------------HHHHHHHhhhHhhhhhcc--------CcccCCeeEEEeecccccccccccc
Q 010318 240 --------------ERYDEIESKMTPFLKASG--------YNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 240 --------------~~~~~i~~~l~~~l~~~g--------~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
....-..++...+.++.+ +.....++++++||++|.|+.+++.
T Consensus 119 ~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~ 183 (220)
T cd04126 119 AGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFE 183 (220)
T ss_pred ccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHH
Confidence 000111122233333332 0111236899999999999999755
No 212
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.61 E-value=8.3e-15 Score=131.09 Aligned_cols=148 Identities=19% Similarity=0.209 Sum_probs=95.7
Q ss_pred EEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC-CeEEEEE
Q 010318 87 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TTRFTIL 165 (513)
Q Consensus 87 ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~li 165 (513)
++|++|+|||||+++|....... .....+.|.......+... ...+.|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI------------------------------VSPVPGTTTDPVEYVWELGPLGPVVLI 50 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc------------------------------cCCCCCcEECCeEEEEEecCCCcEEEE
Confidence 58999999999999995332110 1111445555544455444 7799999
Q ss_pred eCCCCcchH-------HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 166 DAPGHKSYV-------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 166 DtPGh~~f~-------~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
||||+..+. ..+...++.+|++++|+|+..+.. .............+.| +++++||+|+...+
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~-------~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~-- 120 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRAD-------EEEEKLLELLRERGKP-VLLVLNKIDLLPEE-- 120 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCe-EEEEEEccccCChh--
Confidence 999987764 344456789999999999998742 1222235556667888 89999999994322
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
....... ....... . ....+++++||.++.|+.++.
T Consensus 121 --~~~~~~~-~~~~~~~-~---~~~~~~~~~sa~~~~~v~~l~ 156 (163)
T cd00880 121 --EEEELLE-LRLLILL-L---LLGLPVIAVSALTGEGIDELR 156 (163)
T ss_pred --hHHHHHH-HHHhhcc-c---ccCCceEEEeeeccCCHHHHH
Confidence 1111111 0011111 1 125689999999999998753
No 213
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.60 E-value=8.1e-15 Score=140.30 Aligned_cols=171 Identities=20% Similarity=0.242 Sum_probs=108.0
Q ss_pred cCCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEE
Q 010318 77 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (513)
Q Consensus 77 ~~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~ 156 (513)
.+..+.++||++|.||+|||||.|.|++.......+. ...|..-....++
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K------------------------------~~TTr~~ilgi~t 116 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRK------------------------------VHTTRHRILGIIT 116 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCcccccccc------------------------------ccceeeeeeEEEe
Confidence 3456889999999999999999999976554433222 3345555556677
Q ss_pred eCCeEEEEEeCCCC------cch------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-cCCCeE
Q 010318 157 TETTRFTILDAPGH------KSY------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKL 223 (513)
Q Consensus 157 ~~~~~i~liDtPGh------~~f------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-~~ip~~ 223 (513)
....++.|+||||. +.+ +.+.-.++..||.+++|+||...-. ...-..+..+.. ..+| -
T Consensus 117 s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~-------~l~p~vl~~l~~ys~ip-s 188 (379)
T KOG1423|consen 117 SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRT-------PLHPRVLHMLEEYSKIP-S 188 (379)
T ss_pred cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcC-------ccChHHHHHHHHHhcCC-c
Confidence 88899999999992 222 3344556789999999999996311 222333444443 3688 5
Q ss_pred EEEEeeccCCCCCchHHHHHHHHh------------hhHhhhhhc----------cCcccCCeeEEEeeccccccccccc
Q 010318 224 LLVVNKMDDHTVNWSKERYDEIES------------KMTPFLKAS----------GYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 224 ivviNK~D~~~~~~~~~~~~~i~~------------~l~~~l~~~----------g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
|+++||+|.... +..+-..+. ++..-+... |+. .--.+|++||++|+|+.++.
T Consensus 189 ~lvmnkid~~k~---k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gws--hfe~vF~vSaL~G~Gikdlk 263 (379)
T KOG1423|consen 189 ILVMNKIDKLKQ---KRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWS--HFERVFMVSALYGEGIKDLK 263 (379)
T ss_pred eeeccchhcchh---hhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcc--cceeEEEEecccccCHHHHH
Confidence 789999997321 111111111 111111110 110 01258999999999999975
Q ss_pred c-----cCCCCCCC
Q 010318 282 D-----KSLCPWWN 290 (513)
Q Consensus 282 ~-----~~~~~w~~ 290 (513)
+ +..-||+-
T Consensus 264 qyLmsqa~~gpW~y 277 (379)
T KOG1423|consen 264 QYLMSQAPPGPWKY 277 (379)
T ss_pred HHHHhcCCCCCCCC
Confidence 4 44568863
No 214
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.60 E-value=4.2e-15 Score=136.71 Aligned_cols=152 Identities=17% Similarity=0.178 Sum_probs=91.9
Q ss_pred EEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--CeEE
Q 010318 85 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TTRF 162 (513)
Q Consensus 85 v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i 162 (513)
|+++|.+++|||||+++++. +...... ...+. ..-...+..+ ...+
T Consensus 1 i~i~G~~~vGKTsli~~~~~--~~~~~~~-----------------------------~~~~~-~~~~~~~~~~~~~~~~ 48 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTT--NAFPEDY-----------------------------VPTVF-ENYSADVEVDGKPVEL 48 (174)
T ss_pred CEEECCCCCCHHHHHHHHHh--CCCCCCC-----------------------------CCcEE-eeeeEEEEECCEEEEE
Confidence 58999999999999999853 2211100 00010 1101122223 3468
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCCCchHH
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWSKE 240 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~~~~~~ 240 (513)
.|+||||++.|.......++.+|++|+|+|.+.... |+ ......+..+.. .++| +|+|.||+|+.... .
T Consensus 49 ~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~--~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~~---~ 119 (174)
T smart00174 49 GLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPAS---FE--NVKEKWYPEVKHFCPNTP-IILVGTKLDLREDK---S 119 (174)
T ss_pred EEEECCCCcccchhchhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCC-EEEEecChhhhhCh---h
Confidence 999999999998777777889999999999986421 11 011112222332 2678 99999999984311 1
Q ss_pred HHHHH---------HhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 241 RYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 241 ~~~~i---------~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
....+ .++...+.+..++ .+++++||++|.|+.++++
T Consensus 120 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~lf~ 165 (174)
T smart00174 120 TLRELSKQKQEPVTYEQGEALAKRIGA-----VKYLECSALTQEGVREVFE 165 (174)
T ss_pred hhhhhhcccCCCccHHHHHHHHHHcCC-----cEEEEecCCCCCCHHHHHH
Confidence 11111 1222334444442 3799999999999998644
No 215
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.60 E-value=2.2e-14 Score=133.43 Aligned_cols=154 Identities=17% Similarity=0.240 Sum_probs=95.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--e
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~ 160 (513)
++|+++|..++|||||+.+++. +.... +..+.+..+.....+..++ .
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~--~~f~~-----------------------------~~~~T~g~~~~~~~i~~~~~~~ 49 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVE--GEFDE-----------------------------DYIQTLGVNFMEKTISIRGTEI 49 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCCC-----------------------------CCCCccceEEEEEEEEECCEEE
Confidence 4799999999999999998843 21110 0001111122222334444 5
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCCc
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~~ 237 (513)
.+.|+||+|+++|...+...++.+|++++|+|+++... |+ ...+.+..++.. .+| |+|.||+|+... .
T Consensus 50 ~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s---~~---~i~~~~~~~~~~~~~~~p--ilVgnK~Dl~~~-~ 120 (182)
T cd04128 50 TFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKST---LN---SIKEWYRQARGFNKTAIP--ILVGTKYDLFAD-L 120 (182)
T ss_pred EEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCE--EEEEEchhcccc-c
Confidence 78999999999998877778899999999999987521 11 222333333332 344 578999998421 1
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+......+.++...+.+..+ .+++++||++|.|+.+++.
T Consensus 121 ~~~~~~~~~~~~~~~a~~~~------~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 121 PPEEQEEITKQARKYAKAMK------APLIFCSTSHSINVQKIFK 159 (182)
T ss_pred cchhhhhhHHHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 11111122334444444433 4799999999999999754
No 216
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.60 E-value=8.2e-15 Score=133.30 Aligned_cols=148 Identities=17% Similarity=0.155 Sum_probs=91.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--e
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~ 160 (513)
.+|+++|.+++|||||+++++. +...... .....+.....+..++ .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~--~~~~~~~------------------------------~~t~~~~~~~~~~~~~~~~ 49 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVS--GTFIEKY------------------------------DPTIEDFYRKEIEVDSSPS 49 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCCCC------------------------------CCchhheEEEEEEECCEEE
Confidence 5799999999999999998842 3221100 0000001111222233 4
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCC
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~ 236 (513)
.+.|+||||+++|...+...++.+|++|+|+|.++... |. ...+.+..+.. .++| ++++.||+|+...
T Consensus 50 ~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iviv~nK~Dl~~~- 121 (163)
T cd04176 50 VLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQT---FQ---DIKPMRDQIVRVKGYEKVP-IILVGNKVDLESE- 121 (163)
T ss_pred EEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccchhc-
Confidence 57899999999998888888899999999999987521 11 22222222322 3688 8999999998321
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
..... .+...+.+.. .++++++||++|.|+.+++
T Consensus 122 -~~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 122 -REVSS----AEGRALAEEW------GCPFMETSAKSKTMVNELF 155 (163)
T ss_pred -CccCH----HHHHHHHHHh------CCEEEEecCCCCCCHHHHH
Confidence 11000 1112222222 2479999999999999864
No 217
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.59 E-value=5.2e-15 Score=136.00 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=90.7
Q ss_pred EEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC-CeEEEEE
Q 010318 87 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-TTRFTIL 165 (513)
Q Consensus 87 ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~li 165 (513)
++|++|+|||||+++|...... .....+.|++.....+.+. +..+.|+
T Consensus 1 iiG~~~~GKStll~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~~~~~i~ 49 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK-------------------------------VANYPFTTLEPNLGVVEVPDGARIQVA 49 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc-------------------------------ccCCCceeecCcceEEEcCCCCeEEEE
Confidence 5899999999999999432110 0111445555555556667 8899999
Q ss_pred eCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcc---cccccCCcchHHHHHHHH----------HcCCCeEEE
Q 010318 166 DAPGHKS-------YVPNMISGASQADIGVLVISARKGEF---ETGFEKGGQTREHVMLAK----------TLGVTKLLL 225 (513)
Q Consensus 166 DtPGh~~-------f~~~~~~~~~~~D~~ilVVda~~g~~---e~~~~~~~qt~e~l~~~~----------~~~ip~~iv 225 (513)
||||+.+ ....+...+..+|++++|+|+..... ...+ .....+...+. ..+.| +++
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~iv 125 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPL---EDYEILNAELKLYDLETILGLLTAKP-VIY 125 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHH---HHHHHHHHHHHHhhhhhHHHHHhhCC-eEE
Confidence 9999733 23345566788999999999987510 0000 01111222222 24678 899
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 226 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 226 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
++||+|+.... ...... ....... ...+++++||++|.|+.++.+
T Consensus 126 v~NK~Dl~~~~----~~~~~~--~~~~~~~------~~~~~~~~Sa~~~~gl~~l~~ 170 (176)
T cd01881 126 VLNKIDLDDAE----ELEEEL--VRELALE------EGAEVVPISAKTEEGLDELIR 170 (176)
T ss_pred EEEchhcCchh----HHHHHH--HHHHhcC------CCCCEEEEehhhhcCHHHHHH
Confidence 99999994321 111111 1111111 135799999999999988643
No 218
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.59 E-value=1.1e-14 Score=135.92 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=93.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe---CC
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET---ET 159 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~---~~ 159 (513)
++|+++|.+++|||||+++|+.. .... .....+..+.. ..+.. ..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~--~~~~-----------------------------~~~~t~~~~~~-~~i~~~~~~~ 48 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQG--KFPE-----------------------------EYVPTVFENYV-TNIQGPNGKI 48 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhC--cCCC-----------------------------CCCCeeeeeeE-EEEEecCCcE
Confidence 47999999999999999999532 1110 00011111111 11222 23
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHH-HHHHHHH--cCCCeEEEEEeeccCCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e-~l~~~~~--~~ip~~ivviNK~D~~~~~ 236 (513)
..+.|+||||+++|.......++.+|++|+|+|+++... |+ .... .+..... .++| +|+|.||+|+....
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~ 121 (187)
T cd04132 49 IELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTS---LD---NVEDKWFPEVNHFCPGTP-IMLVGLKTDLRKDK 121 (187)
T ss_pred EEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEeChhhhhCc
Confidence 578999999999998887778889999999999987521 11 1111 1222221 3678 89999999984221
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. ..+ .-...+...+....+. .+++++||++|.|+.+++.
T Consensus 122 ~-~~~-~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~ 160 (187)
T cd04132 122 N-LDR-KVTPAQAESVAKKQGA-----FAYLECSAKTMENVEEVFD 160 (187)
T ss_pred c-ccC-CcCHHHHHHHHHHcCC-----cEEEEccCCCCCCHHHHHH
Confidence 0 000 0011223333444432 2799999999999999754
No 219
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.59 E-value=8.8e-15 Score=134.41 Aligned_cols=154 Identities=14% Similarity=0.080 Sum_probs=93.9
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcc-hhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVD-DRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~-~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
++..+|+++|.+|+|||||+++++. +... ... ....|..... ..+..+
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~--~~f~~~~~---------------------------~~T~~~~~~~--~~~~~~ 50 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG--RSFSLNAY---------------------------SPTIKPRYAV--NTVEVY 50 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhC--CCCCcccC---------------------------CCccCcceEE--EEEEEC
Confidence 5678999999999999999999842 2211 000 0001111111 123333
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-cCCCeEEEEEeeccCCCC
Q 010318 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-~~ip~~ivviNK~D~~~~ 235 (513)
+ ..+.++|++|.+.|.......+..+|++|+|+|+++... |+ ...+.+..+.. .++| +++|+||+|+...
T Consensus 51 ~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s---~~---~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~ 123 (169)
T cd01892 51 GQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKS---FS---YCAEVYKKYFMLGEIP-CLFVAAKADLDEQ 123 (169)
T ss_pred CeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHH---HH---HHHHHHHHhccCCCCe-EEEEEEccccccc
Confidence 3 568899999999987766667789999999999976411 10 11122222211 2678 9999999998321
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. . ....+...+.+.+++. .++++||++|.|+.++++
T Consensus 124 ~--~----~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 124 Q--Q----RYEVQPDEFCRKLGLP-----PPLHFSSKLGDSSNELFT 159 (169)
T ss_pred c--c----ccccCHHHHHHHcCCC-----CCEEEEeccCccHHHHHH
Confidence 1 0 0111222333444432 468999999999998644
No 220
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.59 E-value=1.4e-14 Score=134.06 Aligned_cols=149 Identities=19% Similarity=0.151 Sum_probs=92.1
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--Ce
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~ 160 (513)
.+|+++|++|+|||||+++|+... .... + ...+.......+... ++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~--~~~~--------------------~----------~~t~~~~~~~~~~~~~~~~ 49 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH--FVES--------------------Y----------YPTIENTFSKIIRYKGQDY 49 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--Cccc--------------------c----------CcchhhhEEEEEEECCEEE
Confidence 689999999999999999995321 1100 0 000000001112222 35
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH-HHHHH---cCCCeEEEEEeeccCCCCC
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT---LGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l-~~~~~---~~ip~~ivviNK~D~~~~~ 236 (513)
.+.|+||||+.+|..........+|++++|+|+++... ++ ..++.+ .++.. .+.| +|+++||+|+...+
T Consensus 50 ~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~ 122 (180)
T cd04137 50 HLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKS---FE---VVKVIYDKILDMLGKESVP-IVLVGNKSDLHTQR 122 (180)
T ss_pred EEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEchhhhhcC
Confidence 68999999999998877788889999999999987521 10 111111 22222 3567 89999999984211
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.... .++..+...++ .+++++||++|.|+.+++.
T Consensus 123 --~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~ 156 (180)
T cd04137 123 --QVST----EEGKELAESWG------AAFLESSARENENVEEAFE 156 (180)
T ss_pred --ccCH----HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 1001 11222223322 4799999999999998754
No 221
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.59 E-value=3.1e-14 Score=131.41 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=93.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEE-Ee--eeEEEEeCC
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV-EV--GRAHFETET 159 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi-~~--~~~~~~~~~ 159 (513)
++|+++|..++|||||+.+++. +..... ...|+ +. ....+....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~--~~f~~~-------------------------------~~~t~~~~~~~~~~~~~~~ 48 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTT--NAFPGE-------------------------------YIPTVFDNYSANVMVDGKP 48 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhc--CCCCCc-------------------------------CCCcceeeeEEEEEECCEE
Confidence 6899999999999999988842 221110 00011 00 011122233
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHH--cCCCeEEEEEeeccCCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT--LGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~-e~l~~~~~--~~ip~~ivviNK~D~~~~~ 236 (513)
..+.|+||||+++|...+...++.+|++|+|+|.++... |+ ... .++..+.. .++| +|+|.||+|+....
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---f~---~~~~~~~~~~~~~~~~~p-iilvgnK~Dl~~~~ 121 (174)
T cd01871 49 VNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLRDDK 121 (174)
T ss_pred EEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEeeChhhccCh
Confidence 678899999999998877777889999999999987421 11 111 12232332 2577 99999999984322
Q ss_pred chHHHHHHH------HhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 237 WSKERYDEI------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 237 ~~~~~~~~i------~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+..++..+. .++...+.++++ ..+++++||++|.|+.+++
T Consensus 122 ~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~i~~~f 167 (174)
T cd01871 122 DTIEKLKEKKLTPITYPQGLAMAKEIG-----AVKYLECSALTQKGLKTVF 167 (174)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcC-----CcEEEEecccccCCHHHHH
Confidence 111111110 112222333332 2489999999999999864
No 222
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.58 E-value=7.6e-15 Score=134.46 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=92.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
.+|+++|.+|+|||||++++.. +..... ..+ ..+... .....+......+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~--~~~~~~------------------------~~~---t~~~~~-~~~~~~~~~~~~~ 51 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQ--NVFIES------------------------YDP---TIEDSY-RKQVEIDGRQCDL 51 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCcc------------------------cCC---cchheE-EEEEEECCEEEEE
Confidence 5799999999999999999842 211100 000 001000 0111122223578
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCCCCch
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~~~~ 238 (513)
.++||||+++|...+...++.+|++|+|+|.+.... ++ ........+. ..++| ++++.||+|+....
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iiiv~nK~D~~~~~-- 122 (168)
T cd04177 52 EILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEAS---LN---ELGELREQVLRIKDSDNVP-MVLVGNKADLEDDR-- 122 (168)
T ss_pred EEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCCC-EEEEEEChhccccC--
Confidence 899999999999888888899999999999887521 11 1111112221 23688 88999999983221
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. ..++...+.+..+ .++++++||++|.|+.++++
T Consensus 123 ~~----~~~~~~~~~~~~~-----~~~~~~~SA~~~~~i~~~f~ 157 (168)
T cd04177 123 QV----SREDGVSLSQQWG-----NVPFYETSARKRTNVDEVFI 157 (168)
T ss_pred cc----CHHHHHHHHHHcC-----CceEEEeeCCCCCCHHHHHH
Confidence 10 1111222233332 25899999999999998643
No 223
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=1.3e-14 Score=135.66 Aligned_cols=151 Identities=19% Similarity=0.205 Sum_probs=93.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
++|+++|..++|||||+++|+. +..... .....|.+.......+......+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~--~~~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~~ 51 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTE--DEFSES---------------------------TKSTIGVDFKIKTVYIENKIIKL 51 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCCCC---------------------------CCCceeeEEEEEEEEECCEEEEE
Confidence 4799999999999999999942 211100 00012222222222222234567
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCC-ch
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN-WS 238 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~-~~ 238 (513)
.|+||||+++|...+...++.+|++|+|+|+++... |. .....+..+..+ .+| +|++.||+|+.... .+
T Consensus 52 ~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~~---~i~~~~~~i~~~~~~~~~-~ivv~nK~Dl~~~~~v~ 124 (188)
T cd04125 52 QIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQES---FE---NLKFWINEINRYARENVI-KVIVANKSDLVNNKVVD 124 (188)
T ss_pred EEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECCCCcccccCC
Confidence 899999999998888888899999999999987521 11 122222223322 456 89999999984211 11
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. ....+.... .++++.+||++|.|+.+++.
T Consensus 125 ~~-------~~~~~~~~~------~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 125 SN-------IAKSFCDSL------NIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred HH-------HHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 11 111222222 24799999999999998754
No 224
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.58 E-value=2.4e-14 Score=131.93 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=94.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEee-eEEEEeCC-
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFETET- 159 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~-~~~~~~~~- 159 (513)
..+|+++|..++|||||+.+++. +..... ...|+... ...+..++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~--~~f~~~-------------------------------~~~t~~~~~~~~~~~~~~ 48 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFIS--HSFPDY-------------------------------HDPTIEDAYKQQARIDNE 48 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHh--CCCCCC-------------------------------cCCcccceEEEEEEECCE
Confidence 36899999999999999998843 221110 00011100 11122233
Q ss_pred -eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCC
Q 010318 160 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 160 -~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~ 234 (513)
..+.|+||||.++|...+...++.+|++|+|+|.++... |+ ...+.+..+.. .++| +|+|.||+|+..
T Consensus 49 ~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~S---f~---~~~~~~~~i~~~~~~~~~p-iilvgNK~Dl~~ 121 (172)
T cd04141 49 PALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHS---FQ---EASEFKKLITRVRLTEDIP-LVLVGNKVDLES 121 (172)
T ss_pred EEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEChhhhh
Confidence 578999999999998888888899999999999987532 11 12222222222 3578 899999999832
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. ... ..++...+.+.. +++++++||++|.|+.++++
T Consensus 122 ~--~~v----~~~~~~~~a~~~------~~~~~e~Sa~~~~~v~~~f~ 157 (172)
T cd04141 122 Q--RQV----TTEEGRNLAREF------NCPFFETSAALRHYIDDAFH 157 (172)
T ss_pred c--Ccc----CHHHHHHHHHHh------CCEEEEEecCCCCCHHHHHH
Confidence 1 000 011122233333 35899999999999998754
No 225
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.58 E-value=1e-14 Score=117.51 Aligned_cols=81 Identities=40% Similarity=0.636 Sum_probs=77.0
Q ss_pred ceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeE
Q 010318 312 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 389 (513)
Q Consensus 312 ~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~v 389 (513)
|||+|.++| ++.|+++.|+|.+|++++||++.++|++...+|++|+.++.++++|.|||.|+++|++++..++++|++
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~~~~~~~~a~aGd~v~i~l~~~~~~~i~~G~v 80 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQVHGKDVEEAKAGDRVALNLTGVDAKDLERGDV 80 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEECCcCcCEEcCCCEEEEEEcCCCHHHcCCccE
Confidence 689999999 578899999999999999999999999999999999999999999999999999999988889999999
Q ss_pred Ecc
Q 010318 390 LSS 392 (513)
Q Consensus 390 l~~ 392 (513)
|+.
T Consensus 81 l~~ 83 (83)
T cd03696 81 LSS 83 (83)
T ss_pred EcC
Confidence 974
No 226
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.58 E-value=1.5e-14 Score=130.58 Aligned_cols=147 Identities=20% Similarity=0.170 Sum_probs=93.5
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--CeE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TTR 161 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~ 161 (513)
+|+++|++++|||||+++|+... ..... ...+.+.....+... ...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 48 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEY------------------------------DPTIEDSYRKTIVVDGETYT 48 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCc------------------------------CCChhHeEEEEEEECCEEEE
Confidence 58999999999999999995322 11100 000001111223333 467
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-H---cCCCeEEEEEeeccCCCCCc
Q 010318 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-T---LGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 162 i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-~---~~ip~~ivviNK~D~~~~~~ 237 (513)
+.++|+||+.+|.......+..+|++++|+|.+.... + ......+..+. . .++| +++++||+|+....
T Consensus 49 ~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~- 120 (160)
T cd00876 49 LDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRES---F---EEIKGYREQILRVKDDEDIP-IVLVGNKCDLENER- 120 (160)
T ss_pred EEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCc-EEEEEECCcccccc-
Confidence 8999999999998888888899999999999887521 0 12222222222 2 2577 89999999984311
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.. ..+.+..+++..+ .+++++|+++|.|+.+++
T Consensus 121 -~~----~~~~~~~~~~~~~------~~~~~~S~~~~~~i~~l~ 153 (160)
T cd00876 121 -QV----SKEEGKALAKEWG------CPFIETSAKDNINIDEVF 153 (160)
T ss_pred -ee----cHHHHHHHHHHcC------CcEEEeccCCCCCHHHHH
Confidence 11 1223333444433 479999999999999863
No 227
>PLN03110 Rab GTPase; Provisional
Probab=99.57 E-value=3.2e-14 Score=136.11 Aligned_cols=151 Identities=19% Similarity=0.198 Sum_probs=97.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC-
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 159 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~- 159 (513)
..++|+++|+.++|||||+++|+...-. .+....+..+.....+..++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~-------------------------------~~~~~t~g~~~~~~~v~~~~~ 59 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFC-------------------------------LESKSTIGVEFATRTLQVEGK 59 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-------------------------------CCCCCceeEEEEEEEEEECCE
Confidence 4589999999999999999998432110 01112222333333344333
Q ss_pred -eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCC
Q 010318 160 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 -~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~ 235 (513)
..+.|+||||+++|.......++.+|++|+|+|.++... |+ .....+..++. .++| ++++.||+|+...
T Consensus 60 ~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~ 132 (216)
T PLN03110 60 TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---FD---NVQRWLRELRDHADSNIV-IMMAGNKSDLNHL 132 (216)
T ss_pred EEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEEChhcccc
Confidence 578999999999998888888899999999999986421 11 12223333333 3677 8999999998321
Q ss_pred C-chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 N-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. -..+. ...+.... .++++++||++|.|+.++++
T Consensus 133 ~~~~~~~-------~~~l~~~~------~~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 133 RSVAEED-------GQALAEKE------GLSFLETSALEATNVEKAFQ 167 (216)
T ss_pred cCCCHHH-------HHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 1 01111 11111222 35899999999999998755
No 228
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.57 E-value=1.8e-14 Score=133.22 Aligned_cols=152 Identities=16% Similarity=0.146 Sum_probs=93.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeee-EEEEeCC--
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR-AHFETET-- 159 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~-~~~~~~~-- 159 (513)
.+|+++|..++|||||+.++++ +..... .-.|+.... ..+..++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~--~~f~~~-------------------------------~~pt~~~~~~~~~~~~~~~ 48 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTT--NKFPSE-------------------------------YVPTVFDNYAVTVMIGGEP 48 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCCC-------------------------------CCCceeeeeEEEEEECCEE
Confidence 6899999999999999998843 221110 001111111 1233334
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHH-HHHHHHH--cCCCeEEEEEeeccCCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e-~l~~~~~--~~ip~~ivviNK~D~~~~~ 236 (513)
..+.|+||||+++|...+....+.+|++|||+|.++... |+ ...+ .+..++. .++| +|++.||+|+...
T Consensus 49 ~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s---~~---~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~- 120 (175)
T cd01874 49 YTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSS---FE---NVKEKWVPEITHHCPKTP-FLLVGTQIDLRDD- 120 (175)
T ss_pred EEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEECHhhhhC-
Confidence 678899999999998777677889999999999987521 11 1211 2222332 2577 9999999998322
Q ss_pred chHHHHHHH---------HhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.+..+.+ .++...+.++.+ .++++++||++|.|+.++++
T Consensus 121 --~~~~~~l~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~SA~tg~~v~~~f~ 168 (175)
T cd01874 121 --PSTIEKLAKNKQKPITPETGEKLARDLK-----AVKYVECSALTQKGLKNVFD 168 (175)
T ss_pred --hhhHHHhhhccCCCcCHHHHHHHHHHhC-----CcEEEEecCCCCCCHHHHHH
Confidence 1111111 111122222222 25899999999999998643
No 229
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.57 E-value=3.4e-14 Score=138.36 Aligned_cols=149 Identities=17% Similarity=0.290 Sum_probs=92.1
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEE-EeeeEEEEeC--C
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTV-EVGRAHFETE--T 159 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi-~~~~~~~~~~--~ 159 (513)
.+|+++|..++|||||+++++. +..... + . .|+ +.....+..+ .
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~--~~f~~~--------------------y----------~-pTi~d~~~k~~~i~~~~ 47 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLG--GRFEEQ--------------------Y----------T-PTIEDFHRKLYSIRGEV 47 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHc--CCCCCC--------------------C----------C-CChhHhEEEEEEECCEE
Confidence 3699999999999999999952 221110 0 0 011 1111222333 3
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH------------cCCCeEEEEE
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------------LGVTKLLLVV 227 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~------------~~ip~~ivvi 227 (513)
+.+.|+||||+++|.......+..+|++|+|+|.++... |+ .....+..+.. .++| +|++.
T Consensus 48 ~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~S---f~---~i~~~~~~I~~~k~~~~~~~~~~~~~p-iIivg 120 (247)
T cd04143 48 YQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRES---FE---EVCRLREQILETKSCLKNKTKENVKIP-MVICG 120 (247)
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhhcccccccccCCCCc-EEEEE
Confidence 678899999999998766666789999999999987421 21 11222222211 2577 89999
Q ss_pred eeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 228 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 228 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
||+|+... .+... +++..++... ..++++++||++|.|++++++
T Consensus 121 NK~Dl~~~--~~v~~----~ei~~~~~~~-----~~~~~~evSAktg~gI~elf~ 164 (247)
T cd04143 121 NKADRDFP--REVQR----DEVEQLVGGD-----ENCAYFEVSAKKNSNLDEMFR 164 (247)
T ss_pred ECccchhc--cccCH----HHHHHHHHhc-----CCCEEEEEeCCCCCCHHHHHH
Confidence 99998421 11111 2233333211 135799999999999999644
No 230
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.56 E-value=3.9e-14 Score=135.77 Aligned_cols=153 Identities=15% Similarity=0.166 Sum_probs=96.6
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+++|..++|||||+++++. +..... .....|.++...........
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~--~~f~~~---------------------------~~~tig~~~~~~~~~~~~~~ 61 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK---------------------------YEPTIGVEVHPLDFFTNCGK 61 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhh--CCCCCc---------------------------cCCccceeEEEEEEEECCeE
Confidence 5668999999999999999998742 221110 00112333222222222234
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCCCc
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~~~ 237 (513)
..+.|+||||+++|...+....+.+|++|+|+|.+.... |+ .....+..++. .++| +++|.||+|+.....
T Consensus 62 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s---~~---~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~~v 134 (219)
T PLN03071 62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV 134 (219)
T ss_pred EEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHH---HH---HHHHHHHHHHHhCCCCc-EEEEEEchhhhhccC
Confidence 689999999999998777777889999999999987532 11 11222222222 3578 899999999832111
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. +.+ .+.... .++++++||++|.|+.+++.
T Consensus 135 ~~-------~~~-~~~~~~------~~~~~e~SAk~~~~i~~~f~ 165 (219)
T PLN03071 135 KA-------KQV-TFHRKK------NLQYYEISAKSNYNFEKPFL 165 (219)
T ss_pred CH-------HHH-HHHHhc------CCEEEEcCCCCCCCHHHHHH
Confidence 11 111 122222 35799999999999998754
No 231
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.56 E-value=5.9e-14 Score=127.38 Aligned_cols=149 Identities=21% Similarity=0.253 Sum_probs=95.1
Q ss_pred EEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEEE
Q 010318 85 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 164 (513)
Q Consensus 85 v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~l 164 (513)
|+++|++|+|||||++.|...... .. .....+.|...... ..+ ..+.|
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~-~~----------------------------~~~~~~~t~~~~~~--~~~-~~~~~ 49 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL-AR----------------------------TSKTPGKTQLINFF--NVN-DKFRL 49 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce-ee----------------------------ecCCCCcceeEEEE--Ecc-CeEEE
Confidence 789999999999999999521110 00 01113444443322 222 38999
Q ss_pred EeCCCCcch----------HH---HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 165 LDAPGHKSY----------VP---NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 165 iDtPGh~~f----------~~---~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
+||||+... .. ..+......+++++|+|+..... ....+.+..+...+.| +++++||+|
T Consensus 50 ~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~~~~~l~~~~~~-vi~v~nK~D 121 (170)
T cd01876 50 VDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPT-------EIDLEMLDWLEELGIP-FLVVLTKAD 121 (170)
T ss_pred ecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCC-------HhHHHHHHHHHHcCCC-EEEEEEchh
Confidence 999997542 22 22233345789999999987632 3555667778888888 899999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+.. ..........+...++... ...+++|+||+++.|+.++.
T Consensus 122 ~~~----~~~~~~~~~~~~~~l~~~~----~~~~~~~~Sa~~~~~~~~l~ 163 (170)
T cd01876 122 KLK----KSELAKALKEIKKELKLFE----IDPPIILFSSLKGQGIDELR 163 (170)
T ss_pred cCC----hHHHHHHHHHHHHHHHhcc----CCCceEEEecCCCCCHHHHH
Confidence 832 2233344444444444211 13589999999999998854
No 232
>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU). mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.
Probab=99.56 E-value=5.9e-14 Score=115.58 Aligned_cols=88 Identities=22% Similarity=0.212 Sum_probs=76.8
Q ss_pred eeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEE
Q 010318 400 VTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 476 (513)
Q Consensus 400 ~~~f~a~i~~~~~l~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~ 476 (513)
+++|+|++.||+... +.+|+.||++.+|+++.++.|+|..+ + .+.+|++|+.+.|+|+|.+|++
T Consensus 3 ~~~f~a~i~~L~~~~~g~~~~i~~g~~~~~~~~t~~~~~~i~~~----~---------~~~~l~~g~~~~v~i~l~~p~~ 69 (93)
T cd03706 3 HDKVEAQVYILSKAEGGRHKPFVSNFQPQMFSLTWDCAARIDLP----P---------GKEMVMPGEDTKVTLILRRPMV 69 (93)
T ss_pred ceEEEEEEEEEcccccCCCccccCCCeeEEEeccceEEEEEECC----C---------CCcEeCCCCEEEEEEEECCcEE
Confidence 589999999976422 37899999999999999999998855 1 2567999999999999999999
Q ss_pred eeecccccccceEEEEeCCeEEEEEEEEec
Q 010318 477 TEKFADFAQLGRFTLRTEGKTVAVGKVTEL 506 (513)
Q Consensus 477 ~e~~~~~~~lgrfilr~~g~tva~G~V~~~ 506 (513)
++++ |||+||+.++|+|+|+|+++
T Consensus 70 ~~~g------~rf~lR~~~~tvg~G~V~~~ 93 (93)
T cd03706 70 LEKG------QRFTLRDGNRTIGTGLVTDT 93 (93)
T ss_pred EeeC------CEEEEEECCEEEEEEEEEeC
Confidence 9884 89999999999999999874
No 233
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.56 E-value=1.1e-14 Score=134.26 Aligned_cols=154 Identities=15% Similarity=0.138 Sum_probs=93.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--Ce
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~ 160 (513)
++|+++|.+++|||||+.+++. +..... . .....+.-...+..+ ..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~--~~~~~~------------------------~------~~t~~~~~~~~~~~~~~~~ 48 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTT--NGYPTE------------------------Y------VPTAFDNFSVVVLVDGKPV 48 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh--CCCCCC------------------------C------CCceeeeeeEEEEECCEEE
Confidence 4789999999999999988743 111100 0 111111111122222 35
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCCCch
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~~~~ 238 (513)
.+.|+||||+++|...+...++.+|++|+|+|..+... |+ ......+..++. .++| ++++.||+|+....
T Consensus 49 ~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~s---f~--~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-- 120 (173)
T cd04130 49 RLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSS---FQ--NISEKWIPEIRKHNPKAP-IILVGTQADLRTDV-- 120 (173)
T ss_pred EEEEEECCCChhhccccccccCCCcEEEEEEECCCHHH---HH--HHHHHHHHHHHhhCCCCC-EEEEeeChhhccCh--
Confidence 78899999999998777777889999999999987521 11 111122333333 3577 89999999983211
Q ss_pred HHHHH---------HHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 239 KERYD---------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 239 ~~~~~---------~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.... -..++...+.+..+. .+++++||++|.|+.++++
T Consensus 121 -~~~~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~e~Sa~~~~~v~~lf~ 167 (173)
T cd04130 121 -NVLIQLARYGEKPVSQSRAKALAEKIGA-----CEYIECSALTQKNLKEVFD 167 (173)
T ss_pred -hHHHHHhhcCCCCcCHHHHHHHHHHhCC-----CeEEEEeCCCCCCHHHHHH
Confidence 0000 001122333333332 3799999999999998643
No 234
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=99.56 E-value=2.8e-14 Score=114.02 Aligned_cols=79 Identities=30% Similarity=0.493 Sum_probs=73.4
Q ss_pred ceEEEEEEEc--cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeE
Q 010318 312 FRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFV 389 (513)
Q Consensus 312 ~~~~i~~~~~--~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~v 389 (513)
|||+|.++|+ +.|+.++|+|++|++++||+++++|.+..++|++|++++.+++.|.||++|+|+|+ +..++++|++
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~--~~~~i~~G~v 78 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLE--DEIDVSRGDV 78 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEEC--CccccCCCCE
Confidence 6899999995 46778999999999999999999999999999999999999999999999999998 4678999999
Q ss_pred Ecc
Q 010318 390 LSS 392 (513)
Q Consensus 390 l~~ 392 (513)
||+
T Consensus 79 l~~ 81 (81)
T cd03695 79 IVA 81 (81)
T ss_pred EeC
Confidence 974
No 235
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.8e-14 Score=128.24 Aligned_cols=150 Identities=20% Similarity=0.304 Sum_probs=102.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEE----E
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH----F 155 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~----~ 155 (513)
....+|+++|..++|||||+-++ -.+.+++. .-.||..++.. .
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rf--vk~~F~e~-------------------------------~e~TIGaaF~tktv~~ 49 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRF--VKDQFHEN-------------------------------IEPTIGAAFLTKTVTV 49 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhh--hhCccccc-------------------------------cccccccEEEEEEEEe
Confidence 35688999999999999999655 44433321 11233332222 2
Q ss_pred EeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEE--EEeeccCC
Q 010318 156 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL--VVNKMDDH 233 (513)
Q Consensus 156 ~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~iv--viNK~D~~ 233 (513)
.....+|.|+||+|+++|....-...+.|++||+|.|.++-. .|. +.+..+..+....-|.+++ |-||+|+.
T Consensus 50 ~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~---SF~---~aK~WvkeL~~~~~~~~vialvGNK~DL~ 123 (200)
T KOG0092|consen 50 DDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEE---SFE---KAKNWVKELQRQASPNIVIALVGNKADLL 123 (200)
T ss_pred CCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHH---HHH---HHHHHHHHHHhhCCCCeEEEEecchhhhh
Confidence 223467889999999999877777889999999999999753 233 5566666666665566666 56999994
Q ss_pred CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
. -.+..+ ++...+..+.| ..++.+||++|.|+.++
T Consensus 124 ~--~R~V~~----~ea~~yAe~~g------ll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 124 E--RREVEF----EEAQAYAESQG------LLFFETSAKTGENVNEI 158 (200)
T ss_pred h--cccccH----HHHHHHHHhcC------CEEEEEecccccCHHHH
Confidence 3 122222 33444555544 47999999999999986
No 236
>PLN03108 Rab family protein; Provisional
Probab=99.55 E-value=2.5e-14 Score=136.22 Aligned_cols=152 Identities=20% Similarity=0.180 Sum_probs=95.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeE
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 161 (513)
..+|+++|.+++|||||+++|+...- ... .....|.+.......+......
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~--~~~---------------------------~~~ti~~~~~~~~i~~~~~~i~ 56 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRF--QPV---------------------------HDLTIGVEFGARMITIDNKPIK 56 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC--CCC---------------------------CCCCccceEEEEEEEECCEEEE
Confidence 47999999999999999999843211 000 0000222222222223222356
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCC-c
Q 010318 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN-W 237 (513)
Q Consensus 162 i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~-~ 237 (513)
+.|+||||++.|...+...++.+|++|+|+|++.... |+ ...+.+..+.. .++| ++++.||+|+.... .
T Consensus 57 l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s---~~---~l~~~~~~~~~~~~~~~p-iiiv~nK~Dl~~~~~~ 129 (210)
T PLN03108 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLASWLEDARQHANANMT-IMLIGNKCDLAHRRAV 129 (210)
T ss_pred EEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECccCccccCC
Confidence 8899999999998888888889999999999987421 11 11122222222 2567 89999999984211 1
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+ .++...+++..+ ++++++||++|.|+.+++.
T Consensus 130 ~-------~~~~~~~~~~~~------~~~~e~Sa~~~~~v~e~f~ 161 (210)
T PLN03108 130 S-------TEEGEQFAKEHG------LIFMEASAKTAQNVEEAFI 161 (210)
T ss_pred C-------HHHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 1 122233344433 4799999999999998643
No 237
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.54 E-value=4.4e-14 Score=128.90 Aligned_cols=149 Identities=18% Similarity=0.199 Sum_probs=87.8
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
+|+++|.+++|||||+++++. +..... ..+. .+ +.......+......+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~--~~~~~~------------------------~~~t---~~-~~~~~~~~~~~~~~~~~ 50 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLT--KRFIGE------------------------YDPN---LE-SLYSRQVTIDGEQVSLE 50 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHh--Cccccc------------------------cCCC---hH-HhceEEEEECCEEEEEE
Confidence 489999999999999999853 211100 0000 00 00011111222234688
Q ss_pred EEeCCCCcch-HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEEEEeeccCCCC-C
Q 010318 164 ILDAPGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDHTV-N 236 (513)
Q Consensus 164 liDtPGh~~f-~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ivviNK~D~~~~-~ 236 (513)
|+||||+..+ ...+...++.+|++|+|+|++.... |+ .....+..+.. .++| +|+|.||+|+... .
T Consensus 51 i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 123 (165)
T cd04146 51 ILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSS---FD---EISQLKQLIREIKKRDREIP-VILVGNKADLLHYRQ 123 (165)
T ss_pred EEECCCCcccccchHHHHHHhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECCchHHhCc
Confidence 9999999863 4455667889999999999987521 11 12222222222 3678 8999999998321 1
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccc-ccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~-gi~~l~~ 282 (513)
++. ++...+.+..+ .+++++||++|. |+.+++.
T Consensus 124 v~~-------~~~~~~~~~~~------~~~~e~Sa~~~~~~v~~~f~ 157 (165)
T cd04146 124 VST-------EEGEKLASELG------CLFFEVSAAEDYDGVHSVFH 157 (165)
T ss_pred cCH-------HHHHHHHHHcC------CEEEEeCCCCCchhHHHHHH
Confidence 111 11222233332 479999999994 8998643
No 238
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.54 E-value=1.2e-13 Score=125.70 Aligned_cols=147 Identities=18% Similarity=0.228 Sum_probs=92.9
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--eE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--TR 161 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~ 161 (513)
+|+++|.+++|||||+.+++ .+.... +....+..+.....+...+ ..
T Consensus 2 ki~vvG~~~~GKTsli~~~~--~~~~~~-----------------------------~~~~t~~~~~~~~~~~~~~~~~~ 50 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFT--DNEFHS-----------------------------SHISTIGVDFKMKTIEVDGIKVR 50 (161)
T ss_pred EEEEECcCCCCHHHHHHHHh--cCCCCC-----------------------------CCCCceeeEEEEEEEEECCEEEE
Confidence 69999999999999999884 222111 0012222222223344444 56
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCC-c
Q 010318 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN-W 237 (513)
Q Consensus 162 i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~-~ 237 (513)
+.|+||||.++|...+....+.+|++++|+|.+.... |+ .....+..+... ++| ++++.||+|+.... .
T Consensus 51 l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---f~---~~~~~~~~~~~~~~~~~~-iilvgnK~Dl~~~~~v 123 (161)
T cd04117 51 IQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERS---YQ---HIMKWVSDVDEYAPEGVQ-KILIGNKADEEQKRQV 123 (161)
T ss_pred EEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECcccccccCC
Confidence 8899999999998888778899999999999886421 11 112222222222 467 89999999983221 1
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.. ++...+.+.. ..+++++||++|.|+.+++
T Consensus 124 ~~-------~~~~~~~~~~------~~~~~e~Sa~~~~~v~~~f 154 (161)
T cd04117 124 GD-------EQGNKLAKEY------GMDFFETSACTNSNIKESF 154 (161)
T ss_pred CH-------HHHHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 11 1222222322 2479999999999999863
No 239
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.54 E-value=1.3e-13 Score=129.33 Aligned_cols=157 Identities=17% Similarity=0.122 Sum_probs=94.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeee---EEEEe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR---AHFET 157 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~---~~~~~ 157 (513)
...+|+++|..++|||||+.+++. +...+. .-.|+.... ..+..
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~--~~f~~~-------------------------------~~~t~~~~~~~~~~~~~ 48 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTT--NAFPKE-------------------------------YIPTVFDNYSAQTAVDG 48 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHh--CCCCcC-------------------------------CCCceEeeeEEEEEECC
Confidence 347899999999999999998842 221110 111221111 11222
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHH-HHHHHHH--cCCCeEEEEEeeccCCC
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e-~l~~~~~--~~ip~~ivviNK~D~~~ 234 (513)
....+.|+||||+++|...+....+.+|++|+|.|.++... |+ .... .+..+.. -++| +|+|.||.|+..
T Consensus 49 ~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~ 121 (191)
T cd01875 49 RTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSS---YE---NVRHKWHPEVCHHCPNVP-ILLVGTKKDLRN 121 (191)
T ss_pred EEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEEeChhhhc
Confidence 33678999999999998877777889999999999987521 11 1111 1111221 3678 999999999832
Q ss_pred CCchHHHHHH------HHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~------i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.....+.+.+ ..++...+.++.+ .++++.+||++|.|+.+++.
T Consensus 122 ~~~~~~~~~~~~~~~v~~~~~~~~a~~~~-----~~~~~e~SAk~g~~v~e~f~ 170 (191)
T cd01875 122 DADTLKKLKEQGQAPITPQQGGALAKQIH-----AVKYLECSALNQDGVKEVFA 170 (191)
T ss_pred ChhhHHHHhhccCCCCCHHHHHHHHHHcC-----CcEEEEeCCCCCCCHHHHHH
Confidence 2100001111 0112222333332 24899999999999998644
No 240
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.54 E-value=7.1e-14 Score=130.80 Aligned_cols=158 Identities=14% Similarity=0.127 Sum_probs=92.1
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEe-eeEEEEeCCeE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV-GRAHFETETTR 161 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~-~~~~~~~~~~~ 161 (513)
++|+++|..++|||||+++++. +..... ....+.... ....+......
T Consensus 1 ~kivivG~~~vGKTsli~~~~~--~~~~~~-----------------------------~~~t~~~~~~~~i~~~~~~~~ 49 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTR--GYFPQV-----------------------------YEPTVFENYVHDIFVDGLHIE 49 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhc--CCCCCc-----------------------------cCCcceeeeEEEEEECCEEEE
Confidence 3789999999999999999842 221100 000010111 11112222367
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCCCchH
Q 010318 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 162 i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~~~~~ 239 (513)
+.|+||||++.|...+....+.+|++|+|.|.+.... |+ ......+..+.. .++| +|+|.||+|+....-..
T Consensus 50 l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~s---f~--~~~~~~~~~i~~~~~~~p-iilvgNK~Dl~~~~~~~ 123 (189)
T cd04134 50 LSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDS---LE--NVESKWLGEIREHCPGVK-LVLVALKCDLREARNER 123 (189)
T ss_pred EEEEECCCChhccccccccccCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHHhCCCCC-EEEEEEChhhccChhhH
Confidence 8999999999987666666789999999999887521 11 011112333333 2677 99999999994321000
Q ss_pred HHHHH------HHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 240 ERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 240 ~~~~~------i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
..... ..++...+.+..+ .++++++||++|.|+.+++.
T Consensus 124 ~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~SAk~~~~v~e~f~ 167 (189)
T cd04134 124 DDLQRYGKHTISYEEGLAVAKRIN-----ALRYLECSAKLNRGVNEAFT 167 (189)
T ss_pred HHHhhccCCCCCHHHHHHHHHHcC-----CCEEEEccCCcCCCHHHHHH
Confidence 00000 0111222233322 35799999999999999644
No 241
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.54 E-value=2.9e-14 Score=135.86 Aligned_cols=151 Identities=17% Similarity=0.196 Sum_probs=94.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe---C
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET---E 158 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~---~ 158 (513)
..+|+++|.+++|||||+++|+.. .... .....+..+.....+.. .
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~--~~~~-----------------------------~~~~ti~~d~~~~~i~~~~~~ 50 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEG--RFAE-----------------------------VSDPTVGVDFFSRLIEIEPGV 50 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC--CCCC-----------------------------CCCceeceEEEEEEEEECCCC
Confidence 378999999999999999999532 1110 00011222222222332 2
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-c---CCCeEEEEEeeccCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-L---GVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-~---~ip~~ivviNK~D~~~ 234 (513)
...+.|+||||++.|.......++.+|++|+|+|.++... |+ ...+.+..+.. . .+| ++|+.||+|+..
T Consensus 51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~S---f~---~l~~~~~~i~~~~~~~~~~-iilvgNK~Dl~~ 123 (211)
T cd04111 51 RIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRES---FE---HVHDWLEEARSHIQPHRPV-FILVGHKCDLES 123 (211)
T ss_pred EEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCe-EEEEEEcccccc
Confidence 3578999999999998888778899999999999987421 11 12222222222 1 344 788999999842
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. . ...++...+.+..+ ++++.+||++|.|+.++++
T Consensus 124 ~~--~----v~~~~~~~~~~~~~------~~~~e~Sak~g~~v~e~f~ 159 (211)
T cd04111 124 QR--Q----VTREEAEKLAKDLG------MKYIETSARTGDNVEEAFE 159 (211)
T ss_pred cc--c----cCHHHHHHHHHHhC------CEEEEEeCCCCCCHHHHHH
Confidence 11 0 01112223333332 5799999999999999755
No 242
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=99.53 E-value=5.4e-14 Score=114.38 Aligned_cols=85 Identities=27% Similarity=0.445 Sum_probs=73.4
Q ss_pred eeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEE-cceEEe
Q 010318 399 AVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQV-NNSICT 477 (513)
Q Consensus 399 ~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~-~~pi~~ 477 (513)
++++|+|++.|++. ..+|.+||++++|+++.+++|+|.++.+ +++++|+.+.|+|+| .+|+|+
T Consensus 2 ~~~~f~A~i~il~~--~~~i~~Gy~~~l~~~t~~~~~~i~~i~~--------------~~l~~g~~~~v~i~f~~~p~~~ 65 (87)
T cd03708 2 ACWEFEAEILVLHH--PTTISPGYQATVHIGSIRQTARIVSIDK--------------DVLRTGDRALVRFRFLYHPEYL 65 (87)
T ss_pred ceeEEEEEEEEEcC--CCcccCCCEeEEEEcCCEEEEEEEeccH--------------hhccCCCeEEEEEEECCCCcEE
Confidence 47899999999542 3789999999999999999999997743 469999999999995 799998
Q ss_pred eecccccccceEEEEeCCeEEEEEEEEec
Q 010318 478 EKFADFAQLGRFTLRTEGKTVAVGKVTEL 506 (513)
Q Consensus 478 e~~~~~~~lgrfilr~~g~tva~G~V~~~ 506 (513)
++ +|||+|| +|+|+|+|+|+++
T Consensus 66 e~------~grf~lr-~g~tva~G~I~~~ 87 (87)
T cd03708 66 RE------GQRLIFR-EGRTKGVGEVTKV 87 (87)
T ss_pred cc------CCeEEEE-CCCcEEEEEEEEC
Confidence 86 5999995 5599999999875
No 243
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.53 E-value=4e-14 Score=130.33 Aligned_cols=158 Identities=14% Similarity=0.122 Sum_probs=91.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
.+|+++|++++|||||+.+|+.. ...... . ...+... .....+......+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~--~~~~~~------------------------~---~t~~~~~-~~~~~~~~~~~~l 51 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKD--QFPEVY------------------------V---PTVFENY-VADIEVDGKQVEL 51 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC--CCCCCC------------------------C---Cccccce-EEEEEECCEEEEE
Confidence 57999999999999999988431 111000 0 0001000 1111222233568
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHH-HHHHHHH--cCCCeEEEEEeeccCCCCCchH
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e-~l~~~~~--~~ip~~ivviNK~D~~~~~~~~ 239 (513)
.|+||||+++|.......+..+|++++|.|.+.... |+ +..+ .+..++. .++| ++++.||+|+...+...
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~ 124 (175)
T cd01870 52 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS---LE---NIPEKWTPEVKHFCPNVP-IILVGNKKDLRNDEHTR 124 (175)
T ss_pred EEEeCCCchhhhhccccccCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEeeChhcccChhhh
Confidence 999999999988766667789999999999885311 11 1111 1122222 3678 99999999984322111
Q ss_pred HHHHH------HHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 240 ERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 240 ~~~~~------i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
..... ...+...+.+..+ ..+++++||++|.|+.++++
T Consensus 125 ~~i~~~~~~~v~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~lf~ 168 (175)
T cd01870 125 RELAKMKQEPVKPEEGRDMANKIG-----AFGYMECSAKTKEGVREVFE 168 (175)
T ss_pred hhhhhccCCCccHHHHHHHHHHcC-----CcEEEEeccccCcCHHHHHH
Confidence 11000 0111222233332 24799999999999998643
No 244
>PRK09866 hypothetical protein; Provisional
Probab=99.52 E-value=3.3e-13 Score=142.44 Aligned_cols=111 Identities=19% Similarity=0.271 Sum_probs=77.9
Q ss_pred CeEEEEEeCCCCcc-----hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC--CCeEEEEEeecc
Q 010318 159 TTRFTILDAPGHKS-----YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMD 231 (513)
Q Consensus 159 ~~~i~liDtPGh~~-----f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~--ip~~ivviNK~D 231 (513)
..++.|+||||... +.+.|...+..+|++|+|||+..+. ....++.+..++..+ .| +|+++||+|
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~-------s~~DeeIlk~Lkk~~K~~P-VILVVNKID 300 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLK-------SISDEEVREAILAVGQSVP-LYVLVNKFD 300 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCC-------ChhHHHHHHHHHhcCCCCC-EEEEEEccc
Confidence 37899999999533 3456777899999999999998863 245667777777777 47 899999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+. +......+.+...+...+...++. ...++|+||++|.|+..+++
T Consensus 301 l~--dreeddkE~Lle~V~~~L~q~~i~---f~eIfPVSAlkG~nid~LLd 346 (741)
T PRK09866 301 QQ--DRNSDDADQVRALISGTLMKGCIT---PQQIFPVSSMWGYLANRARH 346 (741)
T ss_pred CC--CcccchHHHHHHHHHHHHHhcCCC---CceEEEEeCCCCCCHHHHHH
Confidence 83 211122334444444444333332 23799999999999998643
No 245
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=3.1e-14 Score=144.56 Aligned_cols=158 Identities=17% Similarity=0.209 Sum_probs=110.2
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
+..+.|+|+|+||+|||||+|+|......|.... .|.|.|.....|+.++
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv------------------------------~GTTRDaiea~v~~~G 315 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPV------------------------------PGTTRDAIEAQVTVNG 315 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCC------------------------------CCcchhhheeEeecCC
Confidence 4569999999999999999999977666655443 8999999999999999
Q ss_pred eEEEEEeCCCCcch---------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC-----C-----
Q 010318 160 TRFTILDAPGHKSY---------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-----V----- 220 (513)
Q Consensus 160 ~~i~liDtPGh~~f---------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~-----i----- 220 (513)
+.+.|+||+|.+.- +......+..+|++++||||..+.++ +.......+...+ .
T Consensus 316 ~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~-------sd~~i~~~l~~~~~g~~~~~~~~~ 388 (531)
T KOG1191|consen 316 VPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTE-------SDLKIARILETEGVGLVVIVNKME 388 (531)
T ss_pred eEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccc-------cchHHHHHHHHhccceEEEecccc
Confidence 99999999998761 33344456799999999999887653 4444444444432 1
Q ss_pred -CeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEE-Eeeccccccccccccc
Q 010318 221 -TKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFL-PISGLMGLNMKTRVDK 283 (513)
Q Consensus 221 -p~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~ii-piSa~~g~gi~~l~~~ 283 (513)
.++|+++||+|+... ++ ++......+....|.. ..+++ .+|+++++|+..|+..
T Consensus 389 ~~~~i~~~nk~D~~s~-~~-----~~~~~~~~~~~~~~~~---~~~i~~~vs~~tkeg~~~L~~a 444 (531)
T KOG1191|consen 389 KQRIILVANKSDLVSK-IP-----EMTKIPVVYPSAEGRS---VFPIVVEVSCTTKEGCERLSTA 444 (531)
T ss_pred ccceEEEechhhccCc-cc-----cccCCceeccccccCc---ccceEEEeeechhhhHHHHHHH
Confidence 347889999998322 11 1111111112211111 23444 4999999999997653
No 246
>cd03707 EFTU_III Domain III of elongation factor (EF) Tu. Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix
Probab=99.51 E-value=1.4e-13 Score=112.65 Aligned_cols=85 Identities=26% Similarity=0.322 Sum_probs=74.8
Q ss_pred eeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEE
Q 010318 400 VTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 476 (513)
Q Consensus 400 ~~~f~a~i~~~~~l~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~ 476 (513)
+..|+|++.+++... ..+|+.||++.+|+++..+.|+|..+. ++++|++|+.+.|+|.|++|++
T Consensus 3 ~~~~~a~i~~l~~~~~g~~~~i~~g~~~~l~~gt~~~~~~i~~l~-------------~~~~i~~g~~~~v~l~l~~pv~ 69 (90)
T cd03707 3 HTKFEAEVYVLTKEEGGRHTPFFSGYRPQFYIRTTDVTGSITLPE-------------GTEMVMPGDNVKMTVELIHPIA 69 (90)
T ss_pred eeEEEEEEEEEcccccCCCCcccCCceeEEEeccCeEEEEEEccC-------------cccccCCCCEEEEEEEECCcEE
Confidence 688999999976432 268999999999999999999988653 3567999999999999999999
Q ss_pred eeecccccccceEEEEeCCeEEEEEEE
Q 010318 477 TEKFADFAQLGRFTLRTEGKTVAVGKV 503 (513)
Q Consensus 477 ~e~~~~~~~lgrfilr~~g~tva~G~V 503 (513)
++++ |||+||+.++|+|+|+|
T Consensus 70 ~~~~------~rf~lR~~~~tig~G~V 90 (90)
T cd03707 70 LEKG------LRFAIREGGRTVGAGVI 90 (90)
T ss_pred EecC------CEEEEecCCcEEEEEEC
Confidence 9874 89999999999999986
No 247
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.51 E-value=7.8e-14 Score=119.74 Aligned_cols=107 Identities=23% Similarity=0.307 Sum_probs=75.7
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
+|+++|.+|+|||||+|+|+...... .....+.|.......+..++..+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~------------------------------~~~~~~~T~~~~~~~~~~~~~~~~ 50 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAK------------------------------VSNIPGTTRDPVYGQFEYNNKKFI 50 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSE------------------------------ESSSTTSSSSEEEEEEEETTEEEE
T ss_pred CEEEECCCCCCHHHHHHHHhcccccc------------------------------ccccccceeeeeeeeeeeceeeEE
Confidence 58999999999999999996321110 111145555554456777899999
Q ss_pred EEeCCCCcc---------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEee
Q 010318 164 ILDAPGHKS---------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 229 (513)
Q Consensus 164 liDtPGh~~---------f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK 229 (513)
|+||||..+ ........+..+|++++|+|+.+.. ..+..+.+..++ .+.| +++|+||
T Consensus 51 ~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~-------~~~~~~~~~~l~-~~~~-~i~v~NK 116 (116)
T PF01926_consen 51 LVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPI-------TEDDKNILRELK-NKKP-IILVLNK 116 (116)
T ss_dssp EEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHS-------HHHHHHHHHHHH-TTSE-EEEEEES
T ss_pred EEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCC-------CHHHHHHHHHHh-cCCC-EEEEEcC
Confidence 999999643 3444566678999999999988732 124455556665 6666 9999998
No 248
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.51 E-value=1.9e-13 Score=132.09 Aligned_cols=82 Identities=23% Similarity=0.265 Sum_probs=59.8
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
+|+++|.+|+|||||+++|...... .....+.|.+.....+.+.+..+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-------------------------------v~~~~~tT~~~~~g~~~~~~~~i~ 50 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-------------------------------VAAYEFTTLTCVPGVLEYKGAKIQ 50 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-------------------------------ccCCCCccccceEEEEEECCeEEE
Confidence 6899999999999999999432110 001134455554555677889999
Q ss_pred EEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCC
Q 010318 164 ILDAPGHKS-------YVPNMISGASQADIGVLVISARKG 196 (513)
Q Consensus 164 liDtPGh~~-------f~~~~~~~~~~~D~~ilVVda~~g 196 (513)
++||||+.+ +...++..++.+|++++|+|+++.
T Consensus 51 l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 51 LLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred EEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcc
Confidence 999999753 344566778999999999998764
No 249
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.50 E-value=2.2e-13 Score=128.52 Aligned_cols=104 Identities=13% Similarity=0.176 Sum_probs=71.7
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCC
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~ 235 (513)
....+.|+||||+++|...+....+.+|++|+|+|++.... |+ .....+..++. .++| +|+|.||+|+...
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S---~~---~i~~w~~~i~~~~~~~p-iilvgNK~Dl~~~ 114 (200)
T smart00176 42 GPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVT---YK---NVPNWHRDLVRVCENIP-IVLCGNKVDVKDR 114 (200)
T ss_pred EEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECcccccc
Confidence 34689999999999998888888899999999999998631 11 12222233333 3678 8999999998321
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.... +.+ .+.+.. .++++.+||++|.|+.+++.
T Consensus 115 ~v~~-------~~~-~~~~~~------~~~~~e~SAk~~~~v~~~F~ 147 (200)
T smart00176 115 KVKA-------KSI-TFHRKK------NLQYYDISAKSNYNFEKPFL 147 (200)
T ss_pred cCCH-------HHH-HHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 1111 111 122222 35899999999999998754
No 250
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.49 E-value=2.3e-13 Score=125.79 Aligned_cols=158 Identities=16% Similarity=0.121 Sum_probs=95.0
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
++|+++|+.++|||+|+.+++. +...... ...-|.+.. ....+.....++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~--~~f~~~~---------------------------~~Ti~~~~~-~~~~~~~~~v~l 51 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTS--NKFPTDY---------------------------IPTVFDNFS-ANVSVDGNTVNL 51 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhc--CCCCCCC---------------------------CCcceeeeE-EEEEECCEEEEE
Confidence 5799999999999999998842 3221100 000111111 111122234678
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcch-HHHHHHHHH--cCCCeEEEEEeeccCCCCCchH
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt-~e~l~~~~~--~~ip~~ivviNK~D~~~~~~~~ 239 (513)
.|+||+|+++|...+...++.+|++|||.|.++... |+ .. ...+..++. .++| +|+|.||+|+.......
T Consensus 52 ~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgnK~Dl~~~~~~~ 124 (176)
T cd04133 52 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRAS---YE---NVLKKWVPELRHYAPNVP-IVLVGTKLDLRDDKQYL 124 (176)
T ss_pred EEEECCCCccccccchhhcCCCcEEEEEEEcCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEeChhhccChhhh
Confidence 999999999998888788899999999999986521 21 11 122333332 2577 99999999983210000
Q ss_pred -H---HHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 240 -E---RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 240 -~---~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. ...-..++...+.+..+. .+++.+||++|.|+.+++.
T Consensus 125 ~~~~~~~~v~~~~~~~~a~~~~~-----~~~~E~SAk~~~nV~~~F~ 166 (176)
T cd04133 125 ADHPGASPITTAQGEELRKQIGA-----AAYIECSSKTQQNVKAVFD 166 (176)
T ss_pred hhccCCCCCCHHHHHHHHHHcCC-----CEEEECCCCcccCHHHHHH
Confidence 0 000112223333344332 2699999999999998644
No 251
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.49 E-value=5e-13 Score=126.51 Aligned_cols=131 Identities=16% Similarity=0.240 Sum_probs=81.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEE--eCCe
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE--TETT 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~--~~~~ 160 (513)
++|+++|++++|||||+++|... ..... ...++.......+. ..+.
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~--~~~~t------------------------------~~s~~~~~~~~~~~~~~~~~ 48 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTG--KYRST------------------------------VTSIEPNVATFILNSEGKGK 48 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC--CCCCc------------------------------cCcEeecceEEEeecCCCCc
Confidence 47999999999999999999432 11000 01111112222222 3467
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhc-CEEEEEEECCCCcccccccCCcchHHHHHHH----HH--cCCCeEEEEEeeccCC
Q 010318 161 RFTILDAPGHKSYVPNMISGASQA-DIGVLVISARKGEFETGFEKGGQTREHVMLA----KT--LGVTKLLLVVNKMDDH 233 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~-D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~----~~--~~ip~~ivviNK~D~~ 233 (513)
.+.|+|||||.+|...+...++.+ +++|+|||+..... .+ ..+.+.++.+ .. .++| +++|.||+|+.
T Consensus 49 ~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~--~~---~~~~~~l~~il~~~~~~~~~~p-vliv~NK~Dl~ 122 (203)
T cd04105 49 KFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQK--NL---KDVAEFLYDILTDLEKVKNKIP-VLIACNKQDLF 122 (203)
T ss_pred eEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchh--HH---HHHHHHHHHHHHHHhhccCCCC-EEEEecchhhc
Confidence 899999999999988888888888 99999999987510 00 1233333221 11 3788 99999999996
Q ss_pred CCCchHHHHHHHHhhhHh
Q 010318 234 TVNWSKERYDEIESKMTP 251 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~ 251 (513)
.+...+...+.+..++..
T Consensus 123 ~a~~~~~i~~~le~ei~~ 140 (203)
T cd04105 123 TAKPAKKIKEQLEKELNT 140 (203)
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 554333333333444443
No 252
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.48 E-value=5.1e-13 Score=124.20 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=96.3
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEee-eEEEEe-
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFET- 157 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~-~~~~~~- 157 (513)
+...+|+++|..++|||||+.+++. +..... ...|+... ...+..
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~--~~f~~~-------------------------------~~pT~~~~~~~~~~~~ 49 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAK--DCFPEN-------------------------------YVPTVFENYTASFEID 49 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHh--CCCCCc-------------------------------cCCceeeeeEEEEEEC
Confidence 4567899999999999999998843 221100 01111111 012222
Q ss_pred -CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcch-HHHHHHHHHc--CCCeEEEEEeeccCC
Q 010318 158 -ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLLVVNKMDDH 233 (513)
Q Consensus 158 -~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt-~e~l~~~~~~--~ip~~ivviNK~D~~ 233 (513)
....+.|+||+|.+.|........+.+|++|||+|.+.... |+ .. ...+..++.. +.| +|+|.||+|+.
T Consensus 50 ~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~S---f~---~~~~~w~~~i~~~~~~~p-iilVgNK~DL~ 122 (182)
T cd04172 50 TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLR 122 (182)
T ss_pred CEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEeEChhhh
Confidence 34578999999999998877777899999999999887521 11 11 1222223322 567 89999999983
Q ss_pred CCCchHH------HH-HHHHhhhHhhhhhccCcccCCeeEEEeecccccc-cccccc
Q 010318 234 TVNWSKE------RY-DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRVD 282 (513)
Q Consensus 234 ~~~~~~~------~~-~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~g-i~~l~~ 282 (513)
.. .... +- .-..++...+.++.+. .+++.+||++|.| +.+++.
T Consensus 123 ~~-~~~~~~~~~~~~~~v~~~~~~~~a~~~~~-----~~~~E~SAk~~~n~v~~~F~ 173 (182)
T cd04172 123 TD-LTTLVELSNHRQTPVSYDQGANMAKQIGA-----ATYIECSALQSENSVRDIFH 173 (182)
T ss_pred cC-hhhHHHHHhcCCCCCCHHHHHHHHHHcCC-----CEEEECCcCCCCCCHHHHHH
Confidence 21 0000 00 0112234444555542 3799999999998 998643
No 253
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.48 E-value=1.5e-13 Score=121.36 Aligned_cols=143 Identities=17% Similarity=0.151 Sum_probs=91.2
Q ss_pred EEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcE-EEeeeEEEE--eCCeEEE
Q 010318 87 FIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKT-VEVGRAHFE--TETTRFT 163 (513)
Q Consensus 87 ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giT-i~~~~~~~~--~~~~~i~ 163 (513)
++|++++|||||+++|........ ....| .+.....+. .....+.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~--------------------------------~~~~t~~~~~~~~~~~~~~~~~~~ 48 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE--------------------------------EYETTIIDFYSKTIEVDGKKVKLQ 48 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc--------------------------------ccccchhheeeEEEEECCEEEEEE
Confidence 589999999999999954332100 01111 122222222 2367899
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHH-----HHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-----HVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e-----~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
++|+||+..+.......+..+|++++|+|+..+... .... .+......++| +++++||+|+....
T Consensus 49 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~ivv~nk~D~~~~~-- 118 (157)
T cd00882 49 IWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESF-------ENVKEWLLLILINKEGENIP-IILVGNKIDLPEER-- 118 (157)
T ss_pred EEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHH-------HHHHHHHHHHHHhhccCCCc-EEEEEecccccccc--
Confidence 999999999988887888999999999999986421 1111 22233445777 99999999994332
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
...... ....+... ...+++++|+.+|.|+.++
T Consensus 119 ~~~~~~----~~~~~~~~-----~~~~~~~~s~~~~~~i~~~ 151 (157)
T cd00882 119 VVSEEE----LAEQLAKE-----LGVPYFETSAKTGENVEEL 151 (157)
T ss_pred chHHHH----HHHHHHhh-----cCCcEEEEecCCCCChHHH
Confidence 111111 11111111 2468999999999999875
No 254
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.47 E-value=4.9e-13 Score=128.35 Aligned_cols=151 Identities=20% Similarity=0.225 Sum_probs=89.1
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
.+|+++|.+|+|||||+++++ .+...... .+...+.........+......+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~--~~~~~~~~--------------------------~~~t~~~~~~~~~i~~~~~~~~l 52 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFT--SGEYDDHA--------------------------YDASGDDDTYERTVSVDGEESTL 52 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHh--cCCcCccC--------------------------cCCCccccceEEEEEECCEEEEE
Confidence 379999999999999999984 22211000 00001111111122233345779
Q ss_pred EEEeCCCCcchHHHHHHhhh-hcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCCc
Q 010318 163 TILDAPGHKSYVPNMISGAS-QADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~-~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~~ 237 (513)
.|+||||++.+.... ... .+|++|+|+|+++... |+ ...+.+..+.. .++| +|+|.||+|+....
T Consensus 53 ~i~Dt~G~~~~~~~~--~~~~~ad~iilV~d~td~~S---~~---~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl~~~~- 122 (221)
T cd04148 53 VVIDHWEQEMWTEDS--CMQYQGDAFVVVYSVTDRSS---FE---RASELRIQLRRNRQLEDRP-IILVGNKSDLARSR- 122 (221)
T ss_pred EEEeCCCcchHHHhH--HhhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEEChhccccc-
Confidence 999999998554332 345 8999999999987521 11 22333333333 3578 99999999983221
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+.. .++...+.... .++++++||++|.|+.++++
T Consensus 123 -~v~----~~~~~~~a~~~------~~~~~e~SA~~~~gv~~l~~ 156 (221)
T cd04148 123 -EVS----VQEGRACAVVF------DCKFIETSAGLQHNVDELLE 156 (221)
T ss_pred -eec----HHHHHHHHHHc------CCeEEEecCCCCCCHHHHHH
Confidence 100 11111222222 24799999999999998754
No 255
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.46 E-value=5.3e-13 Score=125.76 Aligned_cols=155 Identities=18% Similarity=0.240 Sum_probs=93.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe-CCeE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTR 161 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~ 161 (513)
++|+++|.+|+|||||+|+|++..-. .... .. .+. ...|.... .+.. ....
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~-~~~~------------------~~-~~~------~~~t~~~~--~~~~~~~~~ 53 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHE-EEGA------------------AP-TGV------VETTMKRT--PYPHPKFPN 53 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCC-CCCc------------------cc-cCc------cccccCce--eeecCCCCC
Confidence 68999999999999999999642110 0000 00 000 01111111 1211 1347
Q ss_pred EEEEeCCCCc-------chHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCC
Q 010318 162 FTILDAPGHK-------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 162 i~liDtPGh~-------~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~ 234 (513)
+.++||||.. .|++. .++..+|++++|.|.. . .......+..++..+.| +++|+||+|+..
T Consensus 54 l~l~DtpG~~~~~~~~~~~l~~--~~~~~~d~~l~v~~~~--~-------~~~d~~~~~~l~~~~~~-~ilV~nK~D~~~ 121 (197)
T cd04104 54 VTLWDLPGIGSTAFPPDDYLEE--MKFSEYDFFIIISSTR--F-------SSNDVKLAKAIQCMGKK-FYFVRTKVDRDL 121 (197)
T ss_pred ceEEeCCCCCcccCCHHHHHHH--hCccCcCEEEEEeCCC--C-------CHHHHHHHHHHHHhCCC-EEEEEecccchh
Confidence 8999999974 33332 2356789988875432 1 13556667778888888 999999999832
Q ss_pred CCc---------hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecc--cccccccc
Q 010318 235 VNW---------SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL--MGLNMKTR 280 (513)
Q Consensus 235 ~~~---------~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~--~g~gi~~l 280 (513)
.+. .+...+++.+.+...++..+.. ..+++++|+. .+.|+..|
T Consensus 122 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~---~p~v~~vS~~~~~~~~~~~l 175 (197)
T cd04104 122 SNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVS---EPPVFLVSNFDPSDYDFPKL 175 (197)
T ss_pred hhhhccccccccHHHHHHHHHHHHHHHHHHcCCC---CCCEEEEeCCChhhcChHHH
Confidence 221 1133556666666666655543 3589999998 56676664
No 256
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.45 E-value=5.8e-13 Score=123.41 Aligned_cols=154 Identities=17% Similarity=0.141 Sum_probs=93.1
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEee-eEEEEe--CC
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFET--ET 159 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~-~~~~~~--~~ 159 (513)
.+|+++|..++|||||+.++.. +..... .-.|+... ...+.. ..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~--~~f~~~-------------------------------~~~t~~~~~~~~~~~~~~~ 48 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAK--DCYPET-------------------------------YVPTVFENYTASFEIDEQR 48 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CcCCCC-------------------------------cCCceEEEEEEEEEECCEE
Confidence 5799999999999999999842 211100 00111111 112222 33
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcch-HHHHHHHHHc--CCCeEEEEEeeccCCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTL--GVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt-~e~l~~~~~~--~ip~~ivviNK~D~~~~~ 236 (513)
..+.|+||||++.|........+.+|++|+|.|.++... |+ .. ...+..++.. ++| +|+|.||+|+...
T Consensus 49 ~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~S---f~---~~~~~w~~~i~~~~~~~~-iilVgnK~DL~~~- 120 (178)
T cd04131 49 IELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPET---LD---SVLKKWRGEIQEFCPNTK-VLLVGCKTDLRTD- 120 (178)
T ss_pred EEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhh---HH---HHHHHHHHHHHHHCCCCC-EEEEEEChhhhcC-
Confidence 568899999999998777777889999999999986521 11 11 2222233332 567 8999999998321
Q ss_pred chH-HHHH------HHHhhhHhhhhhccCcccCCeeEEEeecccccc-cccccc
Q 010318 237 WSK-ERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRVD 282 (513)
Q Consensus 237 ~~~-~~~~------~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~g-i~~l~~ 282 (513)
... ..+. -..++...+.++.+. .+++.+||++|.| +.+++.
T Consensus 121 ~~~~~~~~~~~~~~v~~~e~~~~a~~~~~-----~~~~E~SA~~~~~~v~~~F~ 169 (178)
T cd04131 121 LSTLMELSHQRQAPVSYEQGCAIAKQLGA-----EIYLECSAFTSEKSVRDIFH 169 (178)
T ss_pred hhHHHHHHhcCCCCCCHHHHHHHHHHhCC-----CEEEECccCcCCcCHHHHHH
Confidence 000 0000 011233344444442 3799999999995 988643
No 257
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.45 E-value=1.6e-12 Score=125.13 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=96.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
....+|+++|..++|||+|+.+++. +...... .+ .-|..... ...+....
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~--~~F~~~y------------------------~p---Ti~~~~~~-~i~~~~~~ 60 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAK--DCYPETY------------------------VP---TVFENYTA-GLETEEQR 60 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhc--CCCCCCc------------------------CC---ceeeeeEE-EEEECCEE
Confidence 3457899999999999999998842 2211100 00 00111100 11122234
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCCC-
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVN- 236 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~~- 236 (513)
..+.|+||||.+.|.......++.+|++|||.|.+.... |+ ......+..++. -++| +|+|.||+|+....
T Consensus 61 v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~S---f~--~~~~~w~~~i~~~~~~~p-iilVgNK~DL~~~~~ 134 (232)
T cd04174 61 VELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET---VD--SALKKWKAEIMDYCPSTR-ILLIGCKTDLRTDLS 134 (232)
T ss_pred EEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHH---HH--HHHHHHHHHHHHhCCCCC-EEEEEECcccccccc
Confidence 678999999999998877778899999999999987521 11 001112223332 2567 89999999983210
Q ss_pred chHH-----HHHHHHhhhHhhhhhccCcccCCeeEEEeeccccc-ccccccc
Q 010318 237 WSKE-----RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVD 282 (513)
Q Consensus 237 ~~~~-----~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~-gi~~l~~ 282 (513)
...+ ...-..++...+.+++++. +++.+||++|. |+.+++.
T Consensus 135 ~~~~l~~~~~~~Vs~~e~~~~a~~~~~~-----~~~EtSAktg~~~V~e~F~ 181 (232)
T cd04174 135 TLMELSNQKQAPISYEQGCALAKQLGAE-----VYLECSAFTSEKSIHSIFR 181 (232)
T ss_pred hhhhhccccCCcCCHHHHHHHHHHcCCC-----EEEEccCCcCCcCHHHHHH
Confidence 0000 0001122344455555431 68999999998 7998754
No 258
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.44 E-value=9.3e-13 Score=124.02 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=98.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
++|+++|++|+|||||+|+|++....... ....+.|.......+.+.++.+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~-----------------------------~~~~~~T~~~~~~~~~~~~~~i 51 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESK-----------------------------LSASSVTKTCQKESAVWDGRRV 51 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccc-----------------------------cCCCCcccccceeeEEECCeEE
Confidence 58999999999999999999754332110 1125677777777778899999
Q ss_pred EEEeCCCCcch-------HHHHHHh----hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-C---CCeEEEEE
Q 010318 163 TILDAPGHKSY-------VPNMISG----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-G---VTKLLLVV 227 (513)
Q Consensus 163 ~liDtPGh~~f-------~~~~~~~----~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~-~---ip~~ivvi 227 (513)
+||||||..+. ...+.+. ...+|++|+|+++.. .. ...++.+..++.. | .+++|+++
T Consensus 52 ~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t-------~~d~~~l~~l~~~fg~~~~~~~ivv~ 123 (196)
T cd01852 52 NVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FT-------EEEEQAVETLQELFGEKVLDHTIVLF 123 (196)
T ss_pred EEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cC-------HHHHHHHHHHHHHhChHhHhcEEEEE
Confidence 99999996554 2222222 346899999999986 22 3556666665543 3 24588999
Q ss_pred eeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEe-----ecccccccccc
Q 010318 228 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPI-----SGLMGLNMKTR 280 (513)
Q Consensus 228 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipi-----Sa~~g~gi~~l 280 (513)
|++|....+--++.+......++.+++.++- .++.. |+..+.++.+|
T Consensus 124 T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~------r~~~f~~~~~~~~~~~q~~~L 175 (196)
T cd01852 124 TRGDDLEGGTLEDYLENSCEALKRLLEKCGG------RYVAFNNKAKGEEQEQQVKEL 175 (196)
T ss_pred ECccccCCCcHHHHHHhccHHHHHHHHHhCC------eEEEEeCCCCcchhHHHHHHH
Confidence 9999854321112222223556666666543 23333 34556666653
No 259
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.43 E-value=1.6e-12 Score=124.38 Aligned_cols=153 Identities=15% Similarity=0.166 Sum_probs=92.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--Ce
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~ 160 (513)
.+|+++|..++|||+|+.++.. +.... +....+..+. ...+..+ ..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~--~~f~~-----------------------------~y~pTi~~~~-~~~~~~~~~~v 49 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAK--DAYPG-----------------------------SYVPTVFENY-TASFEIDKRRI 49 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHc--CCCCC-----------------------------ccCCccccce-EEEEEECCEEE
Confidence 5799999999999999998842 21110 0001110011 0122333 35
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH-HHHHH--cCCCeEEEEEeeccCCCCCc
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT--LGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l-~~~~~--~~ip~~ivviNK~D~~~~~~ 237 (513)
.+.|+||+|++.|...+....+.+|++|+|+|.++... |+ .....+ ..++. .++| +|+|.||+|+...
T Consensus 50 ~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~S---f~---~i~~~w~~~~~~~~~~~p-iiLVgnK~DL~~~-- 120 (222)
T cd04173 50 ELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPET---LD---SVLKKWQGETQEFCPNAK-VVLVGCKLDMRTD-- 120 (222)
T ss_pred EEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCC-EEEEEECcccccc--
Confidence 68899999999998888788899999999999987521 11 111111 11222 3577 9999999998321
Q ss_pred hHHHHHH--------H-HhhhHhhhhhccCcccCCeeEEEeecccccc-cccccc
Q 010318 238 SKERYDE--------I-ESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRVD 282 (513)
Q Consensus 238 ~~~~~~~--------i-~~~l~~~l~~~g~~~~~~~~iipiSa~~g~g-i~~l~~ 282 (513)
...... + .++-..+.+++| .++++.+||+++.| +.+++.
T Consensus 121 -~~~~~~~~~~~~~pIs~e~g~~~ak~~~-----~~~y~E~SAk~~~~~V~~~F~ 169 (222)
T cd04173 121 -LATLRELSKQRLIPVTHEQGTVLAKQVG-----AVSYVECSSRSSERSVRDVFH 169 (222)
T ss_pred -hhhhhhhhhccCCccCHHHHHHHHHHcC-----CCEEEEcCCCcCCcCHHHHHH
Confidence 111111 1 122233333443 24899999999985 988654
No 260
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1e-12 Score=118.75 Aligned_cols=155 Identities=19% Similarity=0.173 Sum_probs=105.0
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
....+|.++|..|+|||-|+-++ ..+...++ ...-|-++.....++.++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf--~~~~f~e~-----------------------------~~sTIGVDf~~rt~e~~g 55 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRF--KDDTFTES-----------------------------YISTIGVDFKIRTVELDG 55 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhh--ccCCcchh-----------------------------hcceeeeEEEEEEeeecc
Confidence 35688999999999999999766 44433322 123344455555555554
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 160 --~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
.++.++||+|+++|...+.+..+.|+++|+|.|.+.-. .|+.-+++..-+..-...++| .++|-||+|+...
T Consensus 56 k~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~---SF~~v~~Wi~Ei~~~~~~~v~-~lLVGNK~Dl~~~-- 129 (205)
T KOG0084|consen 56 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQE---SFNNVKRWIQEIDRYASENVP-KLLVGNKCDLTEK-- 129 (205)
T ss_pred eEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHH---HhhhHHHHHHHhhhhccCCCC-eEEEeeccccHhh--
Confidence 56899999999999999999999999999999998742 344223433333333344678 6789999998321
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCee-EEEeeccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQ-FLPISGLMGLNMKTRV 281 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~-iipiSa~~g~gi~~l~ 281 (513)
.. -..++.+.+..+++ ++ ++++||+.+.|+++.+
T Consensus 130 ~~----v~~~~a~~fa~~~~------~~~f~ETSAK~~~NVe~~F 164 (205)
T KOG0084|consen 130 RV----VSTEEAQEFADELG------IPIFLETSAKDSTNVEDAF 164 (205)
T ss_pred ee----cCHHHHHHHHHhcC------CcceeecccCCccCHHHHH
Confidence 11 11122234444444 35 9999999999998853
No 261
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.41 E-value=1.5e-12 Score=121.65 Aligned_cols=155 Identities=15% Similarity=0.199 Sum_probs=90.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--Ce
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--TT 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~ 160 (513)
.+|+++|..++|||||+++|.. +..... ....+.... ...+... ..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~--~~~~~~-----------------------------~~~t~~~~~-~~~~~~~~~~~ 49 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTL--GEFPEE-----------------------------YHPTVFENY-VTDCRVDGKPV 49 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCcc-----------------------------cCCcccceE-EEEEEECCEEE
Confidence 4799999999999999998842 221110 000000000 0112222 34
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCCCCCc
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~ip~~ivviNK~D~~~~~~ 237 (513)
.+.++||||++.|.......++.+|++|+|.|.+.... |+ ... ..+..++.. .+| +|++.||+|+...+.
T Consensus 50 ~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilvgnK~Dl~~~~~ 122 (187)
T cd04129 50 QLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDS---LE---NVRTKWIEEVRRYCPNVP-VILVGLKKDLRQDAV 122 (187)
T ss_pred EEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEeeChhhhhCcc
Confidence 68899999998886544445688999999999876421 11 111 122333322 577 999999999842211
Q ss_pred hH-----HHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 238 SK-----ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 238 ~~-----~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. .++.. .++...+.+.++. .+++.+||++|.|++++++
T Consensus 123 ~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~~f~ 166 (187)
T cd04129 123 AKEEYRTQRFVP-IQQGKRVAKEIGA-----KKYMECSALTGEGVDDVFE 166 (187)
T ss_pred cccccccCCcCC-HHHHHHHHHHhCC-----cEEEEccCCCCCCHHHHHH
Confidence 10 01110 1122233344442 3799999999999999644
No 262
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.41 E-value=2.6e-12 Score=116.56 Aligned_cols=150 Identities=17% Similarity=0.243 Sum_probs=95.2
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
+|+++|..++|||||+++|.. +..... .....|.........+......+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~--~~~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~~l~ 51 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLIN--GEFPEN---------------------------YIPTIGIDSYSKEVSIDGKPVNLE 51 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--SSTTSS---------------------------SETTSSEEEEEEEEEETTEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHh--hccccc---------------------------cccccccccccccccccccccccc
Confidence 589999999999999999842 221110 001123333322233333445699
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCCchHH
Q 010318 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVNWSKE 240 (513)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~~~~~ 240 (513)
|+|++|+++|........+.+|++|+|.|.++.. .|+ .....+..+... +.| ++|+.||.|+.. ..+-
T Consensus 52 i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~---S~~---~~~~~~~~i~~~~~~~~~-iivvg~K~D~~~--~~~v 122 (162)
T PF00071_consen 52 IWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEE---SFE---NLKKWLEEIQKYKPEDIP-IIVVGNKSDLSD--EREV 122 (162)
T ss_dssp EEEETTSGGGHHHHHHHHTTESEEEEEEETTBHH---HHH---THHHHHHHHHHHSTTTSE-EEEEEETTTGGG--GSSS
T ss_pred cccccccccccccccccccccccccccccccccc---ccc---cccccccccccccccccc-ceeeeccccccc--cccc
Confidence 9999999999887777789999999999988742 122 222333333322 355 899999999842 1111
Q ss_pred HHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 241 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
. .++...+.++++ .+++.+||+++.|+.+++
T Consensus 123 ~----~~~~~~~~~~~~------~~~~e~Sa~~~~~v~~~f 153 (162)
T PF00071_consen 123 S----VEEAQEFAKELG------VPYFEVSAKNGENVKEIF 153 (162)
T ss_dssp C----HHHHHHHHHHTT------SEEEEEBTTTTTTHHHHH
T ss_pred h----hhHHHHHHHHhC------CEEEEEECCCCCCHHHHH
Confidence 1 123334444443 589999999999999863
No 263
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.40 E-value=4.2e-12 Score=111.09 Aligned_cols=153 Identities=16% Similarity=0.198 Sum_probs=105.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
+.+..+|-|+|.-||||||++.+|+.....- ...|.-......+.+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~~~----------------------------------i~pt~gf~Iktl~~~ 58 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDTDT----------------------------------ISPTLGFQIKTLEYK 58 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCccc----------------------------------cCCccceeeEEEEec
Confidence 3457999999999999999999995332100 112222233457788
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH----HHcCCCeEEEEEeeccCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~----~~~~ip~~ivviNK~D~~~ 234 (513)
++.++++|..|+..+..-+-.+...+|+.|+|||..+... + ..+..++.-+ +..|.| ++|+.||.|+++
T Consensus 59 ~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r---~---~e~~~~L~~lL~eerlaG~~-~Lvlank~dl~~ 131 (185)
T KOG0073|consen 59 GYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMR---M---QECKQELTELLVEERLAGAP-LLVLANKQDLPG 131 (185)
T ss_pred ceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHH---H---HHHHHHHHHHHhhhhhcCCc-eEEEEecCcCcc
Confidence 9999999999999999999999999999999999977531 1 1333333222 234778 899999999953
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
+ .+.+....+ -.+..+++.. .++++-+||.+|+++.+-
T Consensus 132 ~-l~~~~i~~~-~~L~~l~ks~------~~~l~~cs~~tge~l~~g 169 (185)
T KOG0073|consen 132 A-LSLEEISKA-LDLEELAKSH------HWRLVKCSAVTGEDLLEG 169 (185)
T ss_pred c-cCHHHHHHh-hCHHHhcccc------CceEEEEeccccccHHHH
Confidence 2 222222222 2344444443 578999999999888764
No 264
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.40 E-value=3.9e-12 Score=121.54 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=93.3
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
....++|+++|+.|+|||||+++++ .|...... ....|..+..........
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~--~~~~~~~~---------------------------~~t~~~~~~~~~~~~~~~ 56 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHL--TGEFEKKY---------------------------IPTLGVEVHPLKFYTNCG 56 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHH--hCCCCCCC---------------------------CCccceEEEEEEEEECCe
Confidence 3456899999999999999998764 22211100 000222222211222334
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH--HcCCCeEEEEEeeccCCCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~--~~~ip~~ivviNK~D~~~~~ 236 (513)
...+.++||||+++|...+......+|++|+|+|.+.... |. .....+..+. ..++| ++++.||+|+....
T Consensus 57 ~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~-i~lv~nK~Dl~~~~ 129 (215)
T PTZ00132 57 PICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRIT---YK---NVPNWHRDIVRVCENIP-IVLVGNKVDVKDRQ 129 (215)
T ss_pred EEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECccCcccc
Confidence 5789999999999997777666788999999999987532 11 1111112221 13577 88899999983211
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
... + ...+.... .+.++++||++|.|+.+.+
T Consensus 130 ~~~----~----~~~~~~~~------~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 130 VKA----R----QITFHRKK------NLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred CCH----H----HHHHHHHc------CCEEEEEeCCCCCCHHHHH
Confidence 111 1 11222322 3478999999999998753
No 265
>COG2262 HflX GTPases [General function prediction only]
Probab=99.39 E-value=1.3e-12 Score=130.97 Aligned_cols=149 Identities=17% Similarity=0.141 Sum_probs=97.3
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
....+.|+++|-.|||||||+|+|...... ..+. -=.|.+.....+...
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d~------------------------------LFATLdpttR~~~l~ 237 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVY-VADQ------------------------------LFATLDPTTRRIELG 237 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCee-cccc------------------------------ccccccCceeEEEeC
Confidence 456799999999999999999998422111 1111 112344444445555
Q ss_pred -CeEEEEEeCCCCcch--------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEE
Q 010318 159 -TTRFTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLV 226 (513)
Q Consensus 159 -~~~i~liDtPGh~~f--------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivv 226 (513)
++.+.|-||-|.-+- .+.++..+..||.+++||||+++... .|.......+..+ .+| +|+|
T Consensus 238 ~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~------~~~~~v~~vL~el~~~~~p-~i~v 310 (411)
T COG2262 238 DGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEIL------EKLEAVEDVLAEIGADEIP-IILV 310 (411)
T ss_pred CCceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHH------HHHHHHHHHHHHcCCCCCC-EEEE
Confidence 689999999996543 44455556799999999999987432 3444444555554 467 8999
Q ss_pred EeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 227 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 227 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+||+|+ ..+.. .... +... .-..|++||++|.|++.|.+
T Consensus 311 ~NKiD~--~~~~~-----~~~~----~~~~------~~~~v~iSA~~~~gl~~L~~ 349 (411)
T COG2262 311 LNKIDL--LEDEE-----ILAE----LERG------SPNPVFISAKTGEGLDLLRE 349 (411)
T ss_pred Eecccc--cCchh-----hhhh----hhhc------CCCeEEEEeccCcCHHHHHH
Confidence 999998 32211 1111 1111 01489999999999988644
No 266
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=7.3e-12 Score=112.78 Aligned_cols=157 Identities=19% Similarity=0.255 Sum_probs=103.0
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+..+|+++|..++|||+|+.++.+..-. ... .-.-|+.......+++..
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd--~~Y---------------------------qATIGiDFlskt~~l~d~ 69 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFD--NTY---------------------------QATIGIDFLSKTMYLEDR 69 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhc--ccc---------------------------cceeeeEEEEEEEEEcCc
Confidence 345588999999999999999999765321 100 000233222223333444
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-CC--CeEEEEEeeccCCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GV--TKLLLVVNKMDDHTV 235 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~-~i--p~~ivviNK~D~~~~ 235 (513)
..++.++||+|+++|-...-++++.+.+||+|.|.++-- .|+ +|...+.-++.. |- .-+++|-||-|+ .
T Consensus 70 ~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~---Sfe---~t~kWi~dv~~e~gs~~viI~LVGnKtDL--~ 141 (221)
T KOG0094|consen 70 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRN---SFE---NTSKWIEDVRRERGSDDVIIFLVGNKTDL--S 141 (221)
T ss_pred EEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccc---hHH---HHHHHHHHHHhccCCCceEEEEEcccccc--c
Confidence 568899999999999999999999999999999977642 122 566666555554 32 225667799999 4
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+ +..+.. ++=....+++ ++.|+.+||+.|.|+.+++.
T Consensus 142 d--krqvs~--eEg~~kAkel------~a~f~etsak~g~NVk~lFr 178 (221)
T KOG0094|consen 142 D--KRQVSI--EEGERKAKEL------NAEFIETSAKAGENVKQLFR 178 (221)
T ss_pred c--hhhhhH--HHHHHHHHHh------CcEEEEecccCCCCHHHHHH
Confidence 3 111111 1111233444 35799999999999998644
No 267
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.8e-12 Score=118.86 Aligned_cols=154 Identities=16% Similarity=0.192 Sum_probs=100.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC-
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~- 158 (513)
....+|.++|.+++|||.|+-++ ..+..... +. .-+-|+.....++.+
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf--~d~~f~~~--------------------~~---------sTiGIDFk~kti~l~g 58 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRF--SDDSFNTS--------------------FI---------STIGIDFKIKTIELDG 58 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhh--hhccCcCC--------------------cc---------ceEEEEEEEEEEEeCC
Confidence 46789999999999999999777 22221111 00 112233333334444
Q ss_pred -CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 159 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 159 -~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
...+.++||.|+++|...+-++++.|+.++||+|.+... .|+.-..+.+.+......+++ .++|-||+|+..
T Consensus 59 ~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~---Sfeni~~W~~~I~e~a~~~v~-~~LvGNK~D~~~--- 131 (207)
T KOG0078|consen 59 KKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEK---SFENIRNWIKNIDEHASDDVV-KILVGNKCDLEE--- 131 (207)
T ss_pred eEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchH---HHHHHHHHHHHHHhhCCCCCc-EEEeeccccccc---
Confidence 456889999999999999999999999999999988642 122111122222223334788 789999999832
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
..+--.+.-+++..++| ++|+.+||++|.||.+.
T Consensus 132 ---~R~V~~e~ge~lA~e~G------~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 132 ---KRQVSKERGEALAREYG------IKFFETSAKTNFNIEEA 165 (207)
T ss_pred ---cccccHHHHHHHHHHhC------CeEEEccccCCCCHHHH
Confidence 11112233344455554 57999999999999985
No 268
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.37 E-value=4e-12 Score=123.83 Aligned_cols=154 Identities=20% Similarity=0.288 Sum_probs=96.8
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
+...++|+|.|+||+|||||+++|......+.+ |.| .|-.+...+|+..
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~-------------------YPF------------TTK~i~vGhfe~~ 213 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAP-------------------YPF------------TTKGIHVGHFERG 213 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCC-------------------CCc------------cccceeEeeeecC
Confidence 346689999999999999999999433322221 222 1223333667778
Q ss_pred CeEEEEEeCCCCcch--------HHHHHHhh-hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEee
Q 010318 159 TTRFTILDAPGHKSY--------VPNMISGA-SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 229 (513)
Q Consensus 159 ~~~i~liDtPGh~~f--------~~~~~~~~-~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK 229 (513)
..++.+|||||.-+- -++.+.++ ...+++|+++|++.. +|+.++.|..-.-.+-..++.| +++|+||
T Consensus 214 ~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~---cgy~lE~Q~~L~~eIk~~f~~p-~v~V~nK 289 (346)
T COG1084 214 YLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVILFLFDPSET---CGYSLEEQISLLEEIKELFKAP-IVVVINK 289 (346)
T ss_pred CceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccc---cCCCHHHHHHHHHHHHHhcCCC-eEEEEec
Confidence 889999999996543 33444454 478999999998864 3454433433222333345666 9999999
Q ss_pred ccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 230 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 230 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
+|. .+ .+.++++...+ ...|. ...+-+|+..+.+++.+
T Consensus 290 ~D~--~~--~e~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~d~~ 327 (346)
T COG1084 290 IDI--AD--EEKLEEIEASV----LEEGG-----EEPLKISATKGCGLDKL 327 (346)
T ss_pred ccc--cc--hhHHHHHHHHH----Hhhcc-----ccccceeeeehhhHHHH
Confidence 998 32 33444444332 22221 23566788888887764
No 269
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.37 E-value=1.9e-12 Score=125.55 Aligned_cols=87 Identities=22% Similarity=0.282 Sum_probs=61.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.-.-+|+++|.|++|||||+++|......+. .|.| .|.......+++++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva-------------------~y~F------------TTl~~VPG~l~Y~g 109 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVA-------------------DYPF------------TTLEPVPGMLEYKG 109 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCcccc-------------------ccCc------------eecccccceEeecC
Confidence 3457899999999999999999932221111 0111 23333444578899
Q ss_pred eEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCc
Q 010318 160 TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGE 197 (513)
Q Consensus 160 ~~i~liDtPGh~~-------f~~~~~~~~~~~D~~ilVVda~~g~ 197 (513)
.+|.|+|+||.-. .-+..++.++.||.+++|+|+....
T Consensus 110 a~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 110 AQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred ceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence 9999999999422 1345677789999999999998653
No 270
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.36 E-value=3.2e-12 Score=123.47 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=87.9
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
-+....|++||-||||||||+++|......+.+ |+|. |+........++
T Consensus 193 LKsiadvGLVG~PNAGKSTLL~als~AKpkVa~-------------------YaFT------------TL~P~iG~v~yd 241 (366)
T KOG1489|consen 193 LKSIADVGLVGFPNAGKSTLLNALSRAKPKVAH-------------------YAFT------------TLRPHIGTVNYD 241 (366)
T ss_pred eeeecccceecCCCCcHHHHHHHhhccCCcccc-------------------ccee------------eeccccceeecc
Confidence 355678999999999999999999544433221 2221 111111122233
Q ss_pred C-eEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----c-CCCeEEE
Q 010318 159 T-TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----L-GVTKLLL 225 (513)
Q Consensus 159 ~-~~i~liDtPGh~~-------f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~-~ip~~iv 225 (513)
+ .++++-|.||.-. .--..++-+..|+..++|||.+.+-.-.-+ .|..-.+..+.. + ..| .+|
T Consensus 242 df~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~---~~~~lL~~ELe~yek~L~~rp-~li 317 (366)
T KOG1489|consen 242 DFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPW---QQLQLLIEELELYEKGLADRP-ALI 317 (366)
T ss_pred ccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHH---HHHHHHHHHHHHHhhhhccCc-eEE
Confidence 3 3499999999421 112223334568999999999876210000 011111112222 1 345 678
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 226 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 226 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+||||++.+ .+ ...+++...|. +..++|+||++|+|+.+|+.
T Consensus 318 VaNKiD~~ea--e~----~~l~~L~~~lq--------~~~V~pvsA~~~egl~~ll~ 360 (366)
T KOG1489|consen 318 VANKIDLPEA--EK----NLLSSLAKRLQ--------NPHVVPVSAKSGEGLEELLN 360 (366)
T ss_pred EEeccCchhH--HH----HHHHHHHHHcC--------CCcEEEeeeccccchHHHHH
Confidence 9999998422 11 22233332222 23599999999999988643
No 271
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.33 E-value=1.8e-11 Score=111.14 Aligned_cols=145 Identities=18% Similarity=0.207 Sum_probs=84.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--e
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--T 160 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~ 160 (513)
++|+++|..++|||||+.+++. +..... ..+. .+. . ...+..++ .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~--~~f~~~------------------------~~~~---~~~-~---~~~i~~~~~~~ 47 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLT--GSYVQL------------------------ESPE---GGR-F---KKEVLVDGQSH 47 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHh--CCCCCC------------------------CCCC---ccc-e---EEEEEECCEEE
Confidence 3799999999999999988742 211100 0000 010 0 11233344 5
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCC
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~ 236 (513)
.+.|+||+|.+.+ ...+.+|++++|.|.++... |+ .....+..+.. .++| ++++.||+|+...+
T Consensus 48 ~l~i~D~~g~~~~-----~~~~~~~~~ilv~d~~~~~s---f~---~~~~~~~~i~~~~~~~~~p-iilvgnK~Dl~~~~ 115 (158)
T cd04103 48 LLLIRDEGGAPDA-----QFASWVDAVIFVFSLENEAS---FQ---TVYNLYHQLSSYRNISEIP-LILVGTQDAISESN 115 (158)
T ss_pred EEEEEECCCCCch-----hHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEeeHHHhhhcC
Confidence 6899999999763 23467999999999887521 21 11223333332 2467 89999999973211
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+.... .++...+.++.+ .++++++||++|.|+.+++
T Consensus 116 --~~~v~--~~~~~~~~~~~~-----~~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 116 --PRVID--DARARQLCADMK-----RCSYYETCATYGLNVERVF 151 (158)
T ss_pred --CcccC--HHHHHHHHHHhC-----CCcEEEEecCCCCCHHHHH
Confidence 00010 111122222221 3589999999999999864
No 272
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.32 E-value=9.2e-12 Score=117.07 Aligned_cols=108 Identities=13% Similarity=0.093 Sum_probs=66.3
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHH-HHHHHHH--cCCCeEEEEEeeccCCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTRE-HVMLAKT--LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e-~l~~~~~--~~ip~~ivviNK~D~~~~ 235 (513)
...+.|+||+|++++.. ....+.+|++|+|.|.++... |+ .... .+..++. -++| +|+|.||+|+...
T Consensus 65 ~v~l~iwDTaG~~~~~~--~~~~~~ad~iilv~d~t~~~S---f~---~~~~~w~~~i~~~~~~~p-iilvgNK~DL~~~ 135 (195)
T cd01873 65 SVSLRLWDTFGDHDKDR--RFAYGRSDVVLLCFSIASPNS---LR---NVKTMWYPEIRHFCPRVP-VILVGCKLDLRYA 135 (195)
T ss_pred EEEEEEEeCCCChhhhh--cccCCCCCEEEEEEECCChhH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEchhcccc
Confidence 46789999999976532 235689999999999887521 11 1211 2222332 2577 8999999998421
Q ss_pred CchHH-------------HHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 236 NWSKE-------------RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 236 ~~~~~-------------~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+.... ...-..++...+.++.| ++++.+||++|.|+.+++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~------~~~~E~SAkt~~~V~e~F 188 (195)
T cd01873 136 DLDEVNRARRPLARPIKNADILPPETGRAVAKELG------IPYYETSVVTQFGVKDVF 188 (195)
T ss_pred ccchhhhcccccccccccCCccCHHHHHHHHHHhC------CEEEEcCCCCCCCHHHHH
Confidence 00000 00011223344444443 479999999999999864
No 273
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.32 E-value=1.7e-11 Score=116.82 Aligned_cols=159 Identities=18% Similarity=0.285 Sum_probs=102.2
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeE-EEE
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA-HFE 156 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~-~~~ 156 (513)
..+++.||.++|..|+|||+|+|+|......-... -|++.+.... ...
T Consensus 35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~-------------------------------vg~~t~~~~~~~~~ 83 (296)
T COG3596 35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSK-------------------------------VGVGTDITTRLRLS 83 (296)
T ss_pred cccCceeEEEecCCCCcHHHHHHHHHhccCceeee-------------------------------cccCCCchhhHHhh
Confidence 36788999999999999999999996322211100 1111111111 122
Q ss_pred eCCeEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCC-CeEEEEEe
Q 010318 157 TETTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV-TKLLLVVN 228 (513)
Q Consensus 157 ~~~~~i~liDtPGh~~-------f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~i-p~~ivviN 228 (513)
..+..++|+||||..+ |.......+...|.+++++++.+... +.....++.....+. .+++++||
T Consensus 84 ~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL-------~~d~~f~~dVi~~~~~~~~i~~Vt 156 (296)
T COG3596 84 YDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRAL-------GTDEDFLRDVIILGLDKRVLFVVT 156 (296)
T ss_pred ccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccc-------cCCHHHHHHHHHhccCceeEEEEe
Confidence 3567899999999766 67777777889999999999998753 234444444444443 45999999
Q ss_pred eccCCC--CCchH----------HHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 229 KMDDHT--VNWSK----------ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 229 K~D~~~--~~~~~----------~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
..|+.. .+|+. +..++-.+.+.+++.. .-|++..|+..++|+..+.
T Consensus 157 Q~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~-------V~pV~~~~~r~~wgl~~l~ 214 (296)
T COG3596 157 QADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE-------VKPVVAVSGRLPWGLKELV 214 (296)
T ss_pred hhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhh-------cCCeEEeccccCccHHHHH
Confidence 999843 34532 1122222333333332 2488899989999998863
No 274
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.31 E-value=8e-12 Score=114.51 Aligned_cols=114 Identities=17% Similarity=0.229 Sum_probs=66.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEE---eC
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE---TE 158 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~---~~ 158 (513)
...|.++|..|||||+|+.+|.+. .... -+|.-.....+. ..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~--~~~~---------------------------------T~tS~e~n~~~~~~~~~ 47 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNG--KTVP---------------------------------TVTSMENNIAYNVNNSK 47 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHS--S------------------------------------B---SSEEEECCGSSTC
T ss_pred CceEEEEcCCCCCHHHHHHHHhcC--CcCC---------------------------------eeccccCCceEEeecCC
Confidence 467999999999999999999432 1100 000001111111 24
Q ss_pred CeEEEEEeCCCCcchHHHHHHh---hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH---H---cCCCeEEEEEee
Q 010318 159 TTRFTILDAPGHKSYVPNMISG---ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK---T---LGVTKLLLVVNK 229 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~---~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~---~---~~ip~~ivviNK 229 (513)
+..+.+||+|||.+.....+.. ...+.++|+|||+..- ...+ ..+-++|+-+. . .++| ++||.||
T Consensus 48 ~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~--~~~~---~~~Ae~Ly~iL~~~~~~~~~~p-iLIacNK 121 (181)
T PF09439_consen 48 GKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTD--QKEL---RDVAEYLYDILSDTEVQKNKPP-ILIACNK 121 (181)
T ss_dssp GTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTH--HHHH---HHHHHHHHHHHHHHHCCTT--E-EEEEEE-
T ss_pred CCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccc--hhhH---HHHHHHHHHHHHhhhhccCCCC-EEEEEeC
Confidence 5689999999999987766665 7889999999999741 1111 12333333221 1 2455 9999999
Q ss_pred ccCCCCC
Q 010318 230 MDDHTVN 236 (513)
Q Consensus 230 ~D~~~~~ 236 (513)
.|+..+.
T Consensus 122 ~Dl~~A~ 128 (181)
T PF09439_consen 122 QDLFTAK 128 (181)
T ss_dssp TTSTT--
T ss_pred ccccccC
Confidence 9996554
No 275
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=7.8e-12 Score=111.69 Aligned_cols=150 Identities=20% Similarity=0.231 Sum_probs=101.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 159 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-- 159 (513)
..++.++|..++|||.|+-++ ........ .| .-+-++.+...+..++
T Consensus 6 ~fKyIiiGd~gVGKSclllrf--~~krF~~~----------------------hd-------~TiGvefg~r~~~id~k~ 54 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRF--TDKRFQPV----------------------HD-------LTIGVEFGARMVTIDGKQ 54 (216)
T ss_pred eEEEEEECCCCccHHHHHHHH--hccCcccc----------------------cc-------ceeeeeeceeEEEEcCce
Confidence 467899999999999999655 22211110 00 2233444555555554
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~ 236 (513)
.++.++||+||+.|..-+-+..+.+-+||||.|.+.-.. |. ....+|.-++.. +.. ++++-||+|+..
T Consensus 55 IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~s---F~---hL~~wL~D~rq~~~~Nmv-ImLiGNKsDL~~-- 125 (216)
T KOG0098|consen 55 IKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRES---FN---HLTSWLEDARQHSNENMV-IMLIGNKSDLEA-- 125 (216)
T ss_pred EEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhh---HH---HHHHHHHHHHHhcCCCcE-EEEEcchhhhhc--
Confidence 568999999999999999999999999999999886422 22 223333334444 344 566779999931
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+.+--.++-..+.++.|+ .+..+||++++|+++.+
T Consensus 126 ----rR~Vs~EEGeaFA~ehgL------ifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 126 ----RREVSKEEGEAFAREHGL------IFMETSAKTAENVEEAF 160 (216)
T ss_pred ----cccccHHHHHHHHHHcCc------eeehhhhhhhhhHHHHH
Confidence 123344566677777765 68899999999999854
No 276
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.27 E-value=3.1e-11 Score=107.76 Aligned_cols=155 Identities=17% Similarity=0.208 Sum_probs=100.1
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEe----eeEE
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV----GRAH 154 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~----~~~~ 154 (513)
++..++|.++|.+|+|||+|++++.+..= .. ....||.. ....
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF----------~~-----------------------qykaTIgadFltKev~ 52 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKF----------SQ-----------------------QYKATIGADFLTKEVQ 52 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHH----------HH-----------------------HhccccchhheeeEEE
Confidence 35679999999999999999999854321 00 01122222 1222
Q ss_pred EEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc------CCCeEEEEEe
Q 010318 155 FETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------GVTKLLLVVN 228 (513)
Q Consensus 155 ~~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~------~ip~~ivviN 228 (513)
+......+.|+||+|+++|-.....-.+.+|.++||.|.+.... |+ .-...+=.++... ..| |||+-|
T Consensus 53 Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~S---fe--~L~~Wr~EFl~qa~~~~Pe~FP-FVilGN 126 (210)
T KOG0394|consen 53 VDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKS---FE--NLENWRKEFLIQASPQDPETFP-FVILGN 126 (210)
T ss_pred EcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhh---hc--cHHHHHHHHHHhcCCCCCCccc-EEEEcc
Confidence 33233457899999999998888777899999999999886421 22 1111222233332 467 999999
Q ss_pred eccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 229 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
|+|...- +.+. ......+..++.. +++|++.+||+.+.|+...+
T Consensus 127 KiD~~~~---~~r~-VS~~~Aq~WC~s~-----gnipyfEtSAK~~~NV~~AF 170 (210)
T KOG0394|consen 127 KIDVDGG---KSRQ-VSEKKAQTWCKSK-----GNIPYFETSAKEATNVDEAF 170 (210)
T ss_pred cccCCCC---ccce-eeHHHHHHHHHhc-----CCceeEEecccccccHHHHH
Confidence 9998321 1121 2223334455543 47899999999999998853
No 277
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.1e-11 Score=109.53 Aligned_cols=153 Identities=17% Similarity=0.199 Sum_probs=106.8
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++..+|.++|--+|||||++.+| ..|.+.. .-.|+......+++.
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykL--k~~E~vt--------------------------------tvPTiGfnVE~v~yk 59 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKL--KLGEIVT--------------------------------TVPTIGFNVETVEYK 59 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEee--ccCCccc--------------------------------CCCccccceeEEEEc
Confidence 466789999999999999999887 3332211 233555555667888
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHH-HHH---cCCCeEEEEEeeccCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML-AKT---LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~-~~~---~~ip~~ivviNK~D~~~ 234 (513)
+.+|+++|..|+.++...+..+....+++|+|||+++-.. -...++.+.. +.. .+.| ++|+.||.|+++
T Consensus 60 n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~R------i~eak~eL~~~l~~~~l~~~~-llv~aNKqD~~~ 132 (181)
T KOG0070|consen 60 NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRER------IEEAKEELHRMLAEPELRNAP-LLVFANKQDLPG 132 (181)
T ss_pred ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHH------HHHHHHHHHHHHcCcccCCce-EEEEechhhccc
Confidence 9999999999999999999999999999999999987531 1122332222 211 2566 889999999965
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+= + ..++...|....+. .....+-+++|.+|+|+.+-+
T Consensus 133 al-s-------~~ei~~~L~l~~l~-~~~w~iq~~~a~~G~GL~egl 170 (181)
T KOG0070|consen 133 AL-S-------AAEITNKLGLHSLR-SRNWHIQSTCAISGEGLYEGL 170 (181)
T ss_pred cC-C-------HHHHHhHhhhhccC-CCCcEEeeccccccccHHHHH
Confidence 42 1 22333333333333 235678899999999998743
No 278
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.26 E-value=9.1e-12 Score=107.05 Aligned_cols=114 Identities=19% Similarity=0.210 Sum_probs=71.4
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
+|+|+|..++|||||+++|+..... . ........+.++.............+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~--~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP--D-------------------------NSVPEETSEITIGVDVIVVDGDRQSLQ 53 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-----------------------------------SSTTSCEEEEEEEETTEEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc--c-------------------------cccccccCCCcEEEEEEEecCCceEEE
Confidence 5899999999999999999543221 0 000111133344333333444445699
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-----CCCeEEEEEeecc
Q 010318 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKLLLVVNKMD 231 (513)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~-----~ip~~ivviNK~D 231 (513)
|+|++|+..|.......+..+|++|+|+|+++... ++ +..+.+..+... ++| +||+.||.|
T Consensus 54 ~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s---~~---~~~~~~~~l~~~~~~~~~~p-iilv~nK~D 119 (119)
T PF08477_consen 54 FWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPES---LE---YLSQLLKWLKNIRKRDKNIP-IILVGNKSD 119 (119)
T ss_dssp EEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHH---HH---HHHHHHHHHHHHHHHSSCSE-EEEEEE-TC
T ss_pred EEecCccceecccccchhhcCcEEEEEEcCCChHH---HH---HHHHHHHHHHHHHccCCCCC-EEEEEeccC
Confidence 99999998887765555889999999999997521 11 222222222222 488 999999998
No 279
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.25 E-value=3.2e-11 Score=103.48 Aligned_cols=149 Identities=19% Similarity=0.198 Sum_probs=104.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
....+.++|--+||||||+|.+ .+|...+ .-+.|+-.....++..+.
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~i--a~g~~~e-------------------------------dmiptvGfnmrk~tkgnv 65 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVI--ARGQYLE-------------------------------DMIPTVGFNMRKVTKGNV 65 (186)
T ss_pred heeeEEEEeeccCCcceEEEEE--eeccchh-------------------------------hhcccccceeEEeccCce
Confidence 3467899999999999999977 3332111 133444445566777788
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHH-HH---HHcCCCeEEEEEeeccCCCCC
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LA---KTLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~-~~---~~~~ip~~ivviNK~D~~~~~ 236 (513)
.+.++|.||+.+|-.++.+..+.+++++++|||.+... + ...++.+. ++ ...|+| ++|.-||.|++++=
T Consensus 66 tiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k-----~-~~sr~EL~~LL~k~~l~gip-~LVLGnK~d~~~AL 138 (186)
T KOG0075|consen 66 TIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDK-----L-EASRSELHDLLDKPSLTGIP-LLVLGNKIDLPGAL 138 (186)
T ss_pred EEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCccc-----c-hhhHHHHHHHhcchhhcCCc-EEEecccccCcccc
Confidence 89999999999999999999999999999999987432 1 12333332 22 234899 88999999996552
Q ss_pred chHHHHHHHHhhhHhhhhhccCcc--cCCeeEEEeecccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNV--KKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~--~~~~~iipiSa~~g~gi~~l 280 (513)
++ ..+.. ++|+.. ..++..+.+|++...|++..
T Consensus 139 -~~---~~li~-------rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 139 -SK---IALIE-------RMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred -cH---HHHHH-------HhCccccccceEEEEEEEEcCCccHHHH
Confidence 21 12222 223221 34678899999999999874
No 280
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.25 E-value=1.1e-10 Score=115.55 Aligned_cols=143 Identities=18% Similarity=0.243 Sum_probs=88.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 159 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-- 159 (513)
..+|+++|+.|+|||||+|+|+...-...... .+.......+.+++......++.++
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~---------------------~~~~~~~~~~T~~i~~~~~~i~~~g~~ 62 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYP---------------------PDPAEEHIDKTVEIKSSKAEIEENGVK 62 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCC---------------------CCccccccCCceEEEEEEEEEEECCEE
Confidence 47999999999999999999953321100000 0000011123334444445555555
Q ss_pred eEEEEEeCCCCcchHH---------------------HHHH-----hh--hhcCEEEEEEECCC-CcccccccCCcchHH
Q 010318 160 TRFTILDAPGHKSYVP---------------------NMIS-----GA--SQADIGVLVISARK-GEFETGFEKGGQTRE 210 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~---------------------~~~~-----~~--~~~D~~ilVVda~~-g~~e~~~~~~~qt~e 210 (513)
.+++|+||||..++.. .... .+ ..+|++++++++.. +. .....+
T Consensus 63 ~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l-------~~~D~~ 135 (276)
T cd01850 63 LKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGL-------KPLDIE 135 (276)
T ss_pred EEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCC-------CHHHHH
Confidence 4699999999655422 1111 11 15789999999874 42 234566
Q ss_pred HHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccC
Q 010318 211 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 258 (513)
Q Consensus 211 ~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 258 (513)
.+..+.. ++| +|+|+||+|+. .+......++.+.+.+...++
T Consensus 136 ~lk~l~~-~v~-vi~VinK~D~l----~~~e~~~~k~~i~~~l~~~~i 177 (276)
T cd01850 136 FMKRLSK-RVN-IIPVIAKADTL----TPEELKEFKQRIMEDIEEHNI 177 (276)
T ss_pred HHHHHhc-cCC-EEEEEECCCcC----CHHHHHHHHHHHHHHHHHcCC
Confidence 6666664 788 99999999983 234455677777777877654
No 281
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.5e-11 Score=108.75 Aligned_cols=164 Identities=23% Similarity=0.195 Sum_probs=105.1
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
++....|.|+|.-+|||||++.++-.... .++ ...... +--.|+.......+..
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~-----------------------~~~--~~l~~~-ki~~tvgLnig~i~v~ 67 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFS-----------------------KAY--GGLNPS-KITPTVGLNIGTIEVC 67 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHH-----------------------hhh--cCCCHH-Heecccceeecceeec
Confidence 45668899999999999999988721110 000 000000 0112333344456666
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCc-ccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE-FETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~-~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
+..+.|+|..|++..-..+......|+++|+||||.+.. |+..- .+.+..+..=...|+| +++.+||-|+.++
T Consensus 68 ~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~---t~~~~v~~~E~leg~p-~L~lankqd~q~~-- 141 (197)
T KOG0076|consen 68 NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESK---TAFEKVVENEKLEGAP-VLVLANKQDLQNA-- 141 (197)
T ss_pred cceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHH---HHHHHHHHHHHhcCCc-hhhhcchhhhhhh--
Confidence 889999999999999888888899999999999999832 21100 1222233333446899 7889999999433
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
....++...+.. ....+ ..+.+|.|+||++|+|+.+-
T Consensus 142 --~~~~El~~~~~~-~e~~~---~rd~~~~pvSal~gegv~eg 178 (197)
T KOG0076|consen 142 --MEAAELDGVFGL-AELIP---RRDNPFQPVSALTGEGVKEG 178 (197)
T ss_pred --hhHHHHHHHhhh-hhhcC---CccCccccchhhhcccHHHH
Confidence 223333332222 22222 34779999999999999874
No 282
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.23 E-value=2.2e-10 Score=108.15 Aligned_cols=153 Identities=16% Similarity=0.129 Sum_probs=89.1
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEE-----e
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-----T 157 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~-----~ 157 (513)
++|+++|..++|||||++++.. +..... ....-|.++......+. .
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~--~~f~~~---------------------------~~~Tig~~~~~k~~~~~~~~~~~ 51 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICK--NQVLGR---------------------------PSWTVGCSVDVKHHTYKEGTPEE 51 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHc--CCCCCC---------------------------CCcceeeeEEEEEEEEcCCCCCC
Confidence 3799999999999999998842 211100 00012222222222221 1
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--------------------
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------------------- 217 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-------------------- 217 (513)
....+.|+||+|+++|...+....+.+|++|+|.|.+.... |+ .....+..+..
T Consensus 52 ~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~S---f~---~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~ 125 (202)
T cd04102 52 KTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKS---SQ---NLQRWSLEALNKDTFPTGLLVTNGDYDSEQF 125 (202)
T ss_pred cEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHH---HH---HHHHHHHHHHHhhcccccccccccccccccc
Confidence 23578999999999998877778899999999999987632 11 12222222222
Q ss_pred --cCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccc
Q 010318 218 --LGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 279 (513)
Q Consensus 218 --~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~ 279 (513)
.++| +|+|.||+|+... .....+.....-..+..++| .+.|.+++..+..+..
T Consensus 126 ~~~~~P-iilVGnK~Dl~~~--r~~~~~~~~~~~~~ia~~~~------~~~i~~~c~~~~~~~~ 180 (202)
T cd04102 126 GGNQIP-LLVIGTKLDQIPE--KESSGNLVLTARGFVAEQGN------AEEINLNCTNGRLLAA 180 (202)
T ss_pred CCCCce-EEEEEECccchhh--cccchHHHhhHhhhHHHhcC------CceEEEecCCcccccC
Confidence 2577 9999999998321 11111112222222333443 4567777766655543
No 283
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=3.9e-11 Score=103.05 Aligned_cols=152 Identities=19% Similarity=0.207 Sum_probs=103.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeee----EEEE
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGR----AHFE 156 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~----~~~~ 156 (513)
-..+|+++|+.|+|||.|+.++ ..|....+ .|.||-+.+ ..+.
T Consensus 6 flfkivlvgnagvgktclvrrf--tqglfppg-------------------------------qgatigvdfmiktvev~ 52 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRF--TQGLFPPG-------------------------------QGATIGVDFMIKTVEVN 52 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhh--hccCCCCC-------------------------------CCceeeeeEEEEEEEEC
Confidence 3578999999999999999877 56655443 445554433 3344
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010318 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 157 ~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 236 (513)
.+..++.|+||+|+++|..-+.+..+.|++.|||.|.+.... |.--+.+...+......++- -|+|-||+|+ .+
T Consensus 53 gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqps---fdclpewlreie~yan~kvl-kilvgnk~d~--~d 126 (213)
T KOG0095|consen 53 GEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPS---FDCLPEWLREIEQYANNKVL-KILVGNKIDL--AD 126 (213)
T ss_pred CeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcc---hhhhHHHHHHHHHHhhcceE-EEeeccccch--hh
Confidence 456788999999999999999999999999999999876432 33223444444433344444 3678999998 43
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.. ++-+++...+.... +.-|+.+||+..+|++.|+
T Consensus 127 -rr----evp~qigeefs~~q-----dmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 127 -RR----EVPQQIGEEFSEAQ-----DMYFLETSAKEADNVEKLF 161 (213)
T ss_pred -hh----hhhHHHHHHHHHhh-----hhhhhhhcccchhhHHHHH
Confidence 11 23333333333222 3468899999999999874
No 284
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.21 E-value=4.3e-11 Score=117.16 Aligned_cols=155 Identities=18% Similarity=0.232 Sum_probs=93.8
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
+-.--|+++|-||+|||||++++......|.+ |.| .-....++.... ...
T Consensus 157 KllADVGLVG~PNaGKSTlls~vS~AkPKIad-------------------YpF----------TTL~PnLGvV~~-~~~ 206 (369)
T COG0536 157 KLLADVGLVGLPNAGKSTLLSAVSAAKPKIAD-------------------YPF----------TTLVPNLGVVRV-DGG 206 (369)
T ss_pred eeecccccccCCCCcHHHHHHHHhhcCCcccC-------------------Ccc----------ccccCcccEEEe-cCC
Confidence 44456899999999999999999544443332 111 112223333444 456
Q ss_pred eEEEEEeCCCC-----------cchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeE
Q 010318 160 TRFTILDAPGH-----------KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKL 223 (513)
Q Consensus 160 ~~i~liDtPGh-----------~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ 223 (513)
..|++-|.||. .+|++.. ..|-+.++|||.+.-.-. ............+.+ .+.| .
T Consensus 207 ~sfv~ADIPGLIEGAs~G~GLG~~FLrHI----ERt~vL~hviD~s~~~~~---dp~~~~~~i~~EL~~Y~~~L~~K~-~ 278 (369)
T COG0536 207 ESFVVADIPGLIEGASEGVGLGLRFLRHI----ERTRVLLHVIDLSPIDGR---DPIEDYQTIRNELEKYSPKLAEKP-R 278 (369)
T ss_pred CcEEEecCcccccccccCCCccHHHHHHH----HhhheeEEEEecCcccCC---CHHHHHHHHHHHHHHhhHHhccCc-e
Confidence 77999999994 3466554 457899999998853200 000011112222222 3567 7
Q ss_pred EEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccccc
Q 010318 224 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDK 283 (513)
Q Consensus 224 ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~ 283 (513)
+||+||||++ ++.+.++...+.+.... ++ ..++++||.+++|+++|...
T Consensus 279 ivv~NKiD~~---~~~e~~~~~~~~l~~~~---~~-----~~~~~ISa~t~~g~~~L~~~ 327 (369)
T COG0536 279 IVVLNKIDLP---LDEEELEELKKALAEAL---GW-----EVFYLISALTREGLDELLRA 327 (369)
T ss_pred EEEEeccCCC---cCHHHHHHHHHHHHHhc---CC-----CcceeeehhcccCHHHHHHH
Confidence 8999999963 24566666665554332 22 13344999999999997653
No 285
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.20 E-value=3.3e-10 Score=108.25 Aligned_cols=164 Identities=18% Similarity=0.102 Sum_probs=96.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--C
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 159 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~ 159 (513)
..+|+++|..|+|||||+++|....- . .+....+............ .
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~~~ 53 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEF--P-----------------------------EGYPPTIGNLDPAKTIEPYRRN 53 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcC--c-----------------------------ccCCCceeeeeEEEEEEeCCCE
Confidence 38999999999999999999943211 1 1111222333333333322 4
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~ 236 (513)
..+.++||+|+++|-..+......++++++|+|...... ....+.+....+..+ +.| ++++.||+|+....
T Consensus 54 ~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~-----~~~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~ 127 (219)
T COG1100 54 IKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRES-----SDELTEEWLEELRELAPDDVP-ILLVGNKIDLFDEQ 127 (219)
T ss_pred EEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchh-----hhHHHHHHHHHHHHhCCCCce-EEEEecccccccch
Confidence 668999999999999888888899999999999886211 112334444444544 377 99999999994332
Q ss_pred chHHHHHHHHhhhHhhhhhccC---cccCCeeEEEeecc--cccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGY---NVKKDVQFLPISGL--MGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~---~~~~~~~iipiSa~--~g~gi~~l~~ 282 (513)
+....+.........+...... .......++.+|++ .+.|+.+++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~ 178 (219)
T COG1100 128 SSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFK 178 (219)
T ss_pred hHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHH
Confidence 1111111110000000100000 00012248899999 9999987643
No 286
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.19 E-value=8e-10 Score=107.52 Aligned_cols=122 Identities=15% Similarity=0.158 Sum_probs=77.5
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
.....++|+++|.+|+|||||+|+|++....... ...+.|.........+
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~------------------------------~~~~~T~~~~~~~~~~ 76 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATS------------------------------AFQSETLRVREVSGTV 76 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC------------------------------CCCCceEEEEEEEEEE
Confidence 3456799999999999999999999654321110 0134455555566677
Q ss_pred CCeEEEEEeCCCCcchH-----H-HHH----Hhh--hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-cCC---C
Q 010318 158 ETTRFTILDAPGHKSYV-----P-NMI----SGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGV---T 221 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~-----~-~~~----~~~--~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-~~i---p 221 (513)
.+..++||||||..+.. . ..+ +.+ ...|++++|...+...+ ....+..+..+.. +|. .
T Consensus 77 ~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~------~~~d~~llk~I~e~fG~~i~~ 150 (249)
T cd01853 77 DGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRR------DYLDLPLLRAITDSFGPSIWR 150 (249)
T ss_pred CCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCC------CHHHHHHHHHHHHHhChhhHh
Confidence 88999999999976552 1 111 112 25788888875554321 1233444544443 442 3
Q ss_pred eEEEEEeeccCCCC
Q 010318 222 KLLLVVNKMDDHTV 235 (513)
Q Consensus 222 ~~ivviNK~D~~~~ 235 (513)
++|+|+||+|....
T Consensus 151 ~~ivV~T~~d~~~p 164 (249)
T cd01853 151 NAIVVLTHAASSPP 164 (249)
T ss_pred CEEEEEeCCccCCC
Confidence 58999999998543
No 287
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=7.2e-11 Score=107.92 Aligned_cols=150 Identities=20% Similarity=0.214 Sum_probs=96.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--C
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 159 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~ 159 (513)
...|+++|.+++|||-|+.++....-. .+...-|-++.....+..+ -
T Consensus 14 lFKiVliGDS~VGKsnLlsRftrnEF~-------------------------------~~SksTIGvef~t~t~~vd~k~ 62 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTRNEFS-------------------------------LESKSTIGVEFATRTVNVDGKT 62 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcccccC-------------------------------cccccceeEEEEeeceeecCcE
Confidence 456999999999999999887321111 1111222233333333344 4
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~ 236 (513)
.+..|+||+|+++|..-+....+.|-+|+||.|.+...+ |+ ...+.|..|+.. +++ +++|-||+|+ ..
T Consensus 63 vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~T---fe---nv~rWL~ELRdhad~niv-imLvGNK~DL--~~ 133 (222)
T KOG0087|consen 63 VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQT---FE---NVERWLKELRDHADSNIV-IMLVGNKSDL--NH 133 (222)
T ss_pred EEEeeecccchhhhccccchhhcccceeEEEEechhHHH---HH---HHHHHHHHHHhcCCCCeE-EEEeecchhh--hh
Confidence 567899999999999888888899999999999987521 11 223333444443 576 7888999999 22
Q ss_pred chHHHHHHHH-hhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIE-SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~-~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
...+. ++-..+.... ...|+.+||+.+.|+.+.+.
T Consensus 134 -----lraV~te~~k~~Ae~~------~l~f~EtSAl~~tNVe~aF~ 169 (222)
T KOG0087|consen 134 -----LRAVPTEDGKAFAEKE------GLFFLETSALDATNVEKAFE 169 (222)
T ss_pred -----ccccchhhhHhHHHhc------CceEEEecccccccHHHHHH
Confidence 11111 1222222222 35899999999999998643
No 288
>PLN00023 GTP-binding protein; Provisional
Probab=99.19 E-value=2.5e-10 Score=113.50 Aligned_cols=144 Identities=17% Similarity=0.157 Sum_probs=86.9
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe-
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 157 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~- 157 (513)
....++|+++|+.++|||||+.+|+. +..... .....|.+.......+..
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~--g~F~~~---------------------------~~pTIG~d~~ik~I~~~~~ 68 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVK--GSSIAR---------------------------PPQTIGCTVGVKHITYGSP 68 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhc--CCcccc---------------------------cCCceeeeEEEEEEEECCc
Confidence 45568999999999999999999842 211100 001123333222222221
Q ss_pred ------------CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-------
Q 010318 158 ------------ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------- 218 (513)
Q Consensus 158 ------------~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~------- 218 (513)
....+.|+||+|+++|...+-..++.+|++|+|+|.+.... |+ .....+..+...
T Consensus 69 ~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~S---Fe---nL~kWl~eI~~~~~~s~p~ 142 (334)
T PLN00023 69 GSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRT---KT---SLQKWASEVAATGTFSAPL 142 (334)
T ss_pred ccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhccccccc
Confidence 23569999999999998888888899999999999887421 11 222233333332
Q ss_pred --------CCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccC
Q 010318 219 --------GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 258 (513)
Q Consensus 219 --------~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 258 (513)
++| +|||.||+|+...+-.........++.+.+.++.|+
T Consensus 143 ~s~~~~~~~ip-IILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 143 GSGGPGGLPVP-YIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred ccccccCCCCc-EEEEEECccccccccccccccccHHHHHHHHHHcCC
Confidence 367 999999999832110000001134555666666664
No 289
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.18 E-value=2.4e-10 Score=115.09 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=65.2
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010318 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 157 ~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 236 (513)
..++.+.||||+|...-. ...+..+|++++|++...|. ...-+. ...+.+. -|+|+||+|+...
T Consensus 146 ~~g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd----------~iq~~k-~gi~E~a-DIiVVNKaDl~~~- 209 (332)
T PRK09435 146 AAGYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGD----------ELQGIK-KGIMELA-DLIVINKADGDNK- 209 (332)
T ss_pred ccCCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchH----------HHHHHH-hhhhhhh-heEEeehhcccch-
Confidence 357889999999976322 22366899999998744441 111111 1123333 3789999998432
Q ss_pred chHHHHHHHHhhhHhhhhhccCc-ccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~-~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
...+....++...+....-. .....|++++||++|.|++++.+
T Consensus 210 ---~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~ 253 (332)
T PRK09435 210 ---TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQ 253 (332)
T ss_pred ---hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHH
Confidence 22344555555555432200 01125899999999999999765
No 290
>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=99.17 E-value=2.9e-10 Score=94.30 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=78.7
Q ss_pred eeEEccCCCCcceeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEE
Q 010318 387 GFVLSSVAKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVV 466 (513)
Q Consensus 387 G~vl~~~~~~~~~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~ 466 (513)
|++++.++... ++++|.+++.++... ..+++.++++.+|+++..+.|+|.- ++. ..+++|+..+
T Consensus 1 G~vl~~~~~~~-~~~~~~~~i~~l~~~-~~~l~~~~~v~~~~Gt~~v~~ri~l----l~~----------~~~~pg~~~~ 64 (97)
T cd04094 1 GDVLADPGSLL-PTRRLDVRLTVLLSA-PRPLKHRQRVHLHHGTSEVLARVVL----LDR----------DELAPGEEAL 64 (97)
T ss_pred CCEEecCCCcC-CceEEEEEEEEECCC-CccCCCCCeEEEEeccceEEEEEEe----CCc----------cccCCCCEEE
Confidence 78999887443 469999999986432 2679999999999999999999882 221 2388999999
Q ss_pred EEEEEcceEEeeecccccccceEEEEeCC--eEEEEEEE
Q 010318 467 CRIQVNNSICTEKFADFAQLGRFTLRTEG--KTVAVGKV 503 (513)
Q Consensus 467 v~~~~~~pi~~e~~~~~~~lgrfilr~~g--~tva~G~V 503 (513)
++|+|++|+++... .||+||+.+ +|+|+|+|
T Consensus 65 a~l~l~~pl~~~~g------drfilR~~~~~~tiggG~V 97 (97)
T cd04094 65 AQLRLEEPLVALRG------DRFILRSYSPLRTLGGGRV 97 (97)
T ss_pred EEEEECCcEeecCC------CeEEEeeCCCCeEEEeEEC
Confidence 99999999998765 599999998 99999986
No 291
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.17 E-value=1.2e-10 Score=101.35 Aligned_cols=150 Identities=19% Similarity=0.202 Sum_probs=95.6
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhh--cCcEEEeeeEEEEeC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERI--KGKTVEVGRAHFETE 158 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~--~giTi~~~~~~~~~~ 158 (513)
..++|.++|..|+|||+|+-++ ....++ .+.. .|+...+....+.-.
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrF--v~~~fd-----------------------------~~~~~tIGvDFkvk~m~vdg~ 58 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRF--VSNTFD-----------------------------DLHPTTIGVDFKVKVMQVDGK 58 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHH--HhcccC-----------------------------ccCCceeeeeEEEEEEEEcCc
Confidence 4588999999999999998555 222222 1211 233333333344445
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc----CCCeEEEEEeeccCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~----~ip~~ivviNK~D~~~ 234 (513)
..++.|+||+|+++|...+-+..+.|-++|+|.|.+.-.. |. .....+..+..+ ++- .++|-||+|..
T Consensus 59 ~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdt---f~---kLd~W~~Eld~Ystn~dii-kmlVgNKiDke- 130 (209)
T KOG0080|consen 59 RLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDT---FV---KLDIWLKELDLYSTNPDII-KMLVGNKIDKE- 130 (209)
T ss_pred eEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhh---HH---hHHHHHHHHHhhcCCccHh-Hhhhcccccch-
Confidence 6789999999999999999999999999999999886421 11 111112222222 343 24789999972
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
+ +|. --.++=..+.++++ .-|+.+||++.+|+..-
T Consensus 131 -s---~R~-V~reEG~kfAr~h~------~LFiE~SAkt~~~V~~~ 165 (209)
T KOG0080|consen 131 -S---ERV-VDREEGLKFARKHR------CLFIECSAKTRENVQCC 165 (209)
T ss_pred -h---ccc-ccHHHHHHHHHhhC------cEEEEcchhhhccHHHH
Confidence 1 111 11223334455543 57999999999999864
No 292
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1.8e-09 Score=110.90 Aligned_cols=145 Identities=23% Similarity=0.250 Sum_probs=105.6
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..++..||++|+||+|||||+..|....- ..+-.+...-+|+- ...
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~t----------------------------k~ti~~i~GPiTvv------sgK 111 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFT----------------------------KQTIDEIRGPITVV------SGK 111 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHH----------------------------HhhhhccCCceEEe------ecc
Confidence 35677889999999999999999853221 01111122334442 335
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
.++++|+.+| +-+..|+..+..||.+||+||++-| ++..|.|.|.++...|.|+++-|++..|+.. +
T Consensus 112 ~RRiTflEcp---~Dl~~miDvaKIaDLVlLlIdgnfG-------fEMETmEFLnil~~HGmPrvlgV~ThlDlfk---~ 178 (1077)
T COG5192 112 TRRITFLECP---SDLHQMIDVAKIADLVLLLIDGNFG-------FEMETMEFLNILISHGMPRVLGVVTHLDLFK---N 178 (1077)
T ss_pred eeEEEEEeCh---HHHHHHHhHHHhhheeEEEeccccC-------ceehHHHHHHHHhhcCCCceEEEEeeccccc---C
Confidence 6899999999 5677888889999999999999988 3368999999999999999999999999942 3
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 273 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~ 273 (513)
...+..++..+...+..-=|. .+.++.+|+..
T Consensus 179 ~stLr~~KKrlkhRfWtEiyq---GaKlFylsgV~ 210 (1077)
T COG5192 179 PSTLRSIKKRLKHRFWTEIYQ---GAKLFYLSGVE 210 (1077)
T ss_pred hHHHHHHHHHHhhhHHHHHcC---CceEEEecccc
Confidence 445666666666555432232 45788888643
No 293
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.16 E-value=4.3e-10 Score=107.68 Aligned_cols=153 Identities=16% Similarity=0.308 Sum_probs=98.3
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe-CCeEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETTRF 162 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i 162 (513)
+|.++|..+|||||....+...... . +.+.-|.|+++....+.. ....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p--~----------------------------dT~~L~~T~~ve~~~v~~~~~~~l 50 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP--R----------------------------DTLRLEPTIDVEKSHVRFLSFLPL 50 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G--G----------------------------GGGG-----SEEEEEEECTTSCEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc--h----------------------------hccccCCcCCceEEEEecCCCcEE
Confidence 5889999999999999887432211 0 122356777776666653 45699
Q ss_pred EEEeCCCCcchHHHH-----HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCC
Q 010318 163 TILDAPGHKSYVPNM-----ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 163 ~liDtPGh~~f~~~~-----~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~ 235 (513)
+++|+||+..|..+. ..-.+.++++|+|+|+.....+..+. .....+..+... +++ +.|++.|||+...
T Consensus 51 ~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~---~~~~~i~~l~~~sp~~~-v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 51 NIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLA---YLSDCIEALRQYSPNIK-VFVFIHKMDLLSE 126 (232)
T ss_dssp EEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHH---HHHHHHHHHHHHSTT-E-EEEEEE-CCCS-H
T ss_pred EEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHH---HHHHHHHHHHHhCCCCe-EEEEEeecccCCH
Confidence 999999998887653 33467999999999999443221111 223333334433 455 8899999999766
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 273 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~ 273 (513)
+..++.++.+.+.+...+...++. .+.++.+|.+.
T Consensus 127 ~~r~~~~~~~~~~i~~~~~~~~~~---~~~~~~TSI~D 161 (232)
T PF04670_consen 127 DEREEIFRDIQQRIRDELEDLGIE---DITFFLTSIWD 161 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-T---SEEEEEE-TTS
T ss_pred HHHHHHHHHHHHHHHHHhhhcccc---ceEEEeccCcC
Confidence 777788888889998888877654 57899999755
No 294
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.14 E-value=1.1e-10 Score=110.54 Aligned_cols=201 Identities=13% Similarity=0.193 Sum_probs=108.9
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcch--------hHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEE
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDD--------RTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVE 149 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~--------~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~ 149 (513)
..+++..|.++|..||||||++.+|......-.. +...+..=.+-..=|....|..+|.........||+..
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 3456788999999999999999999644321000 00000000000000222334444444444445555443
Q ss_pred eeeEE--E---------EeCCeEEEEEeCCCCcc-h--------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH
Q 010318 150 VGRAH--F---------ETETTRFTILDAPGHKS-Y--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTR 209 (513)
Q Consensus 150 ~~~~~--~---------~~~~~~i~liDtPGh~~-f--------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~ 209 (513)
..... | ..+...+.||||||+.. | +-.. .+...+-+++.|||....-....|. ..-.
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~-lass~ptvv~YvvDt~rs~~p~tFM--SNMl 171 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITET-LASSFPTVVVYVVDTPRSTSPTTFM--SNML 171 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhh-HhhcCCeEEEEEecCCcCCCchhHH--HHHH
Confidence 32211 1 01345689999999743 3 2222 2235678899999977654332222 2223
Q ss_pred HHHHHHHHcCCCeEEEEEeeccCCCCCch------HHHHHHHHhhh-----HhhhhhccCc---ccCCeeEEEeeccccc
Q 010318 210 EHVMLAKTLGVTKLLLVVNKMDDHTVNWS------KERYDEIESKM-----TPFLKASGYN---VKKDVQFLPISGLMGL 275 (513)
Q Consensus 210 e~l~~~~~~~ip~~ivviNK~D~~~~~~~------~~~~~~i~~~l-----~~~l~~~g~~---~~~~~~iipiSa~~g~ 275 (513)
....++...++| +||+.||.|.....+. .+.|++..++. ..+...+.+. .-..+..+.+|+.+|.
T Consensus 172 YAcSilyktklp-~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~ 250 (366)
T KOG1532|consen 172 YACSILYKTKLP-FIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE 250 (366)
T ss_pred HHHHHHHhccCC-eEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC
Confidence 334455566899 9999999999655432 23444444321 1111111100 0125689999999999
Q ss_pred ccccccc
Q 010318 276 NMKTRVD 282 (513)
Q Consensus 276 gi~~l~~ 282 (513)
|.++++.
T Consensus 251 G~ddf~~ 257 (366)
T KOG1532|consen 251 GFDDFFT 257 (366)
T ss_pred cHHHHHH
Confidence 9998643
No 295
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=7.1e-11 Score=101.35 Aligned_cols=155 Identities=18% Similarity=0.180 Sum_probs=100.0
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
.++.|+|+..+|||+++-+-+.. ||-.+++. .-|+...+...+-.-....+
T Consensus 22 fKlliiGnssvGKTSfl~ry~dd----------------------SFt~afvs-------TvGidFKvKTvyr~~kRikl 72 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADD----------------------SFTSAFVS-------TVGIDFKVKTVYRSDKRIKL 72 (193)
T ss_pred eeEEEEccCCccchhhhHHhhcc----------------------ccccceee-------eeeeeEEEeEeeecccEEEE
Confidence 48999999999999998655321 22222221 13444443322222234578
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHH
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 242 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~ 242 (513)
.++||.|+++|...+-...+++++.||+.|.+.... |..-......+....-.+.| +|+|-||+|+.. +|.
T Consensus 73 QiwDTagqEryrtiTTayyRgamgfiLmyDitNeeS---f~svqdw~tqIktysw~naq-vilvgnKCDmd~-----eRv 143 (193)
T KOG0093|consen 73 QIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---FNSVQDWITQIKTYSWDNAQ-VILVGNKCDMDS-----ERV 143 (193)
T ss_pred EEEecccchhhhHHHHHHhhccceEEEEEecCCHHH---HHHHHHHHHHheeeeccCce-EEEEecccCCcc-----cee
Confidence 999999999998888888999999999999886432 21000111122222334677 999999999821 121
Q ss_pred HHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 243 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 243 ~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
-..+..+.+..++|| .++.+||+...|+..+++
T Consensus 144 -is~e~g~~l~~~LGf------efFEtSaK~NinVk~~Fe 176 (193)
T KOG0093|consen 144 -ISHERGRQLADQLGF------EFFETSAKENINVKQVFE 176 (193)
T ss_pred -eeHHHHHHHHHHhCh------HHhhhcccccccHHHHHH
Confidence 122344556667776 599999999999998644
No 296
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=99.14 E-value=5.2e-10 Score=92.44 Aligned_cols=86 Identities=26% Similarity=0.405 Sum_probs=75.9
Q ss_pred CCCCceEEEEEEE--c--------cCCeEEEEEEEeeeecCCCEEEEecC-------C-----cEEEEEEEEECCeeecc
Q 010318 308 PNGPFRMPIIDKF--K--------DMGTVVMGKVESGSVREGDSLLVMPN-------K-----AQVKVLAIYCDDNRVRH 365 (513)
Q Consensus 308 ~~~~~~~~i~~~~--~--------~~G~vv~g~v~sG~l~~gd~v~~~p~-------~-----~~~~V~~i~~~~~~v~~ 365 (513)
.++|++|+|.++| . .+|.|+.|+|.+|.|++||+|.+.|+ + ...+|.||+.+++.+++
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~~~l~~ 81 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAENNDLQE 81 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecCccccE
Confidence 4689999999998 2 57999999999999999999999976 1 35689999999999999
Q ss_pred cCCCCeEEE---EeccCCcccceeeeEEccC
Q 010318 366 AGPGENLRI---RLSGIEEEDILSGFVLSSV 393 (513)
Q Consensus 366 a~aG~~v~i---~l~~~~~~~i~~G~vl~~~ 393 (513)
|.||+.+++ -..++.+.|..+|+|++.+
T Consensus 82 a~pGgliGvgT~Ldpsltk~D~l~GqV~g~p 112 (113)
T cd03688 82 AVPGGLIGVGTKLDPTLTKADRLVGQVVGEP 112 (113)
T ss_pred EeCCCeEEEccccCccccccceeeEEEeecC
Confidence 999999999 4448888899999999875
No 297
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=99.10 E-value=8e-10 Score=88.95 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=68.8
Q ss_pred EEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC---cEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeee
Q 010318 314 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 388 (513)
Q Consensus 314 ~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~---~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 388 (513)
..|.++| ++.|+++.|+|.+|.|++|+.+.++|++ ...+|++|+.+++.+++|.+|+.|+|.|++++ ++++||
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~~~~v~~a~~G~ecgi~l~~~~--d~~~Gd 80 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRFKDDVKEVKKGYECGITLENFN--DIKVGD 80 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEcCcccCEECCCCEEEEEEeCcc--cCCCCC
Confidence 4577788 4668999999999999999999999999 77899999999999999999999999999877 899999
Q ss_pred EE
Q 010318 389 VL 390 (513)
Q Consensus 389 vl 390 (513)
+|
T Consensus 81 vi 82 (84)
T cd03692 81 II 82 (84)
T ss_pred EE
Confidence 87
No 298
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2.5e-10 Score=98.56 Aligned_cols=150 Identities=22% Similarity=0.260 Sum_probs=94.7
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEE--eCC
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE--TET 159 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~--~~~ 159 (513)
..++.++|+.|+|||.|+.+++... .+++ ...-+-++.+..-+. .+.
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~k--fkDd-----------------------------ssHTiGveFgSrIinVGgK~ 57 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENK--FKDD-----------------------------SSHTIGVEFGSRIVNVGGKT 57 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhh--hccc-----------------------------ccceeeeeecceeeeecCcE
Confidence 3678999999999999998884221 1110 012222233333333 344
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCe--EEEEEeeccCCCCCc
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTK--LLLVVNKMDDHTVNW 237 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~--~ivviNK~D~~~~~~ 237 (513)
.++.|+||+|+++|..-+....+.|-.++||.|++.... |+ .....+.-++.+--|+ +|++-||-|+. +.
T Consensus 58 vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~Tsrds---fn---aLtnWL~DaR~lAs~nIvviL~GnKkDL~--~~ 129 (214)
T KOG0086|consen 58 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDS---FN---ALTNWLTDARTLASPNIVVILCGNKKDLD--PE 129 (214)
T ss_pred EEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhh---HH---HHHHHHHHHHhhCCCcEEEEEeCChhhcC--hh
Confidence 678999999999999888888899999999999886421 21 2223334455554443 45556999982 21
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
.+..+ .+...|.. ...+-+..+||++|+|+++-
T Consensus 130 R~Vtf----lEAs~Faq------Enel~flETSa~TGeNVEEa 162 (214)
T KOG0086|consen 130 REVTF----LEASRFAQ------ENELMFLETSALTGENVEEA 162 (214)
T ss_pred hhhhH----HHHHhhhc------ccceeeeeecccccccHHHH
Confidence 22222 22222222 23567899999999999883
No 299
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.10 E-value=2.4e-10 Score=95.74 Aligned_cols=133 Identities=22% Similarity=0.227 Sum_probs=89.0
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
.+++++|.+++|||||++.|.+..-. .-.|+. ++++++
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l-----------------------------------ykKTQA-----ve~~d~-- 39 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL-----------------------------------YKKTQA-----VEFNDK-- 39 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh-----------------------------------hcccce-----eeccCc--
Confidence 47899999999999999999321100 011211 222222
Q ss_pred EEEeCCC----CcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 163 TILDAPG----HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 163 ~liDtPG----h~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
-.||||| |..+....+..+..+|++++|-.|+++. ++..-.++.....| .|-+|+|.|++. +
T Consensus 40 ~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~----------s~f~p~f~~~~~k~-vIgvVTK~DLae-d-- 105 (148)
T COG4917 40 GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPE----------SRFPPGFLDIGVKK-VIGVVTKADLAE-D-- 105 (148)
T ss_pred cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCcc----------ccCCcccccccccc-eEEEEecccccc-h--
Confidence 2689999 6666666677778999999999999873 12222333334445 889999999941 1
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+-.+..+.+|.+.|-. +++.+|+....|++++.
T Consensus 106 -----~dI~~~~~~L~eaGa~-----~IF~~s~~d~~gv~~l~ 138 (148)
T COG4917 106 -----ADISLVKRWLREAGAE-----PIFETSAVDNQGVEELV 138 (148)
T ss_pred -----HhHHHHHHHHHHcCCc-----ceEEEeccCcccHHHHH
Confidence 2234455567777743 89999999999999853
No 300
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.10 E-value=1.6e-09 Score=109.00 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=28.4
Q ss_pred eEEEEEeCCCC----cch---HHHHHHhhhhcCEEEEEEECCC
Q 010318 160 TRFTILDAPGH----KSY---VPNMISGASQADIGVLVISARK 195 (513)
Q Consensus 160 ~~i~liDtPGh----~~f---~~~~~~~~~~~D~~ilVVda~~ 195 (513)
..+.|+||||. +.+ .+..+..++.||++++|||+..
T Consensus 69 v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 57999999997 333 2345667899999999999974
No 301
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.1e-09 Score=100.36 Aligned_cols=156 Identities=19% Similarity=0.258 Sum_probs=98.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
....|.++|..|||||+|+-+|++... +..-.++......+...+.
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~----------------------------------~~TvtSiepn~a~~r~gs~ 82 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSH----------------------------------RGTVTSIEPNEATYRLGSE 82 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCc----------------------------------cCeeeeeccceeeEeecCc
Confidence 347899999999999999988843211 0011233344455666677
Q ss_pred EEEEEeCCCCcchHHHHHHhhh---hcCEEEEEEECCCCcccccccCCcchH---HHHHH--HHH---cCCCeEEEEEee
Q 010318 161 RFTILDAPGHKSYVPNMISGAS---QADIGVLVISARKGEFETGFEKGGQTR---EHVML--AKT---LGVTKLLLVVNK 229 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~---~~D~~ilVVda~~g~~e~~~~~~~qt~---e~l~~--~~~---~~ip~~ivviNK 229 (513)
..++||.|||.+.......... .+-++|+|||+..-. +..+ |.++- +.. .+.+++.++.||
T Consensus 83 ~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~--------k~vrdvaefLydil~~~~~~~~~~~vLIaCNK 154 (238)
T KOG0090|consen 83 NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFL--------KNVRDVAEFLYDILLDSRVKKNKPPVLIACNK 154 (238)
T ss_pred ceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccc--------hhhHHHHHHHHHHHHhhccccCCCCEEEEecc
Confidence 7999999999988776666655 799999999987521 2222 22221 122 233449999999
Q ss_pred ccCCCCCchHHHHHHHHhhhHhhhhhcc------Cc--------------------ccCCeeEEEeeccccccccc
Q 010318 230 MDDHTVNWSKERYDEIESKMTPFLKASG------YN--------------------VKKDVQFLPISGLMGLNMKT 279 (513)
Q Consensus 230 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g------~~--------------------~~~~~~iipiSa~~g~gi~~ 279 (513)
-|+..+.-.+.-.+.+..++..+...-. .. ....+.|.+.|+++| ++.+
T Consensus 155 qDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~ 229 (238)
T KOG0090|consen 155 QDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQ 229 (238)
T ss_pred hhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHH
Confidence 9997776444444445555544433211 00 123567888999888 6665
No 302
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.07 E-value=3.8e-10 Score=109.11 Aligned_cols=113 Identities=17% Similarity=0.258 Sum_probs=55.7
Q ss_pred EEEEEeCCCCcchHHHHHHh------h--hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 161 RFTILDAPGHKSYVPNMISG------A--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~------~--~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
.+.|+||||+..+......+ + ...=++++++|+..-.....|- ....-.+.....+++| .|.|+||+|+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~--s~~L~s~s~~~~~~lP-~vnvlsK~Dl 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFV--SSLLLSLSIMLRLELP-HVNVLSKIDL 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHH--HHHHHHHHHHHHHTSE-EEEEE--GGG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHH--HHHHHHHHHHhhCCCC-EEEeeeccCc
Confidence 79999999987764444333 2 2355789999987531100000 0111112223447999 7899999999
Q ss_pred CCCCchHHH-----------------HHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 233 HTVNWSKER-----------------YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 233 ~~~~~~~~~-----------------~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.... .+.. +....+.+..++...+. ..+++|+|+.+++|+.++.
T Consensus 169 ~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~----~~~f~pls~~~~~~~~~L~ 229 (238)
T PF03029_consen 169 LSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL----VIRFIPLSSKDGEGMEELL 229 (238)
T ss_dssp S-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS----S---EE-BTTTTTTHHHHH
T ss_pred ccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC----CceEEEEECCChHHHHHHH
Confidence 5411 1111 23333444444444443 1389999999999999853
No 303
>PRK13768 GTPase; Provisional
Probab=99.06 E-value=1.4e-09 Score=106.41 Aligned_cols=111 Identities=20% Similarity=0.280 Sum_probs=66.6
Q ss_pred CeEEEEEeCCCCcchH------HHHHHhhhh--cCEEEEEEECCCCcccccccCCcchHHHHHHHH-----HcCCCeEEE
Q 010318 159 TTRFTILDAPGHKSYV------PNMISGASQ--ADIGVLVISARKGEFETGFEKGGQTREHVMLAK-----TLGVTKLLL 225 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~------~~~~~~~~~--~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-----~~~ip~~iv 225 (513)
+..+.++||||+..+. +...+.+.. ++++++|+|+..+.. +.+.+...++. ..++| +|+
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~-------~~d~~~~~~l~~~~~~~~~~~-~i~ 167 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKT-------PSDFVSLLLLALSVQLRLGLP-QIP 167 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCC-------HHHHHHHHHHHHHHHHHcCCC-EEE
Confidence 3479999999976542 222233333 899999999987632 23333333222 56888 889
Q ss_pred EEeeccCCCCCchHHHHHHHHhh---------------------hHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 226 VVNKMDDHTVNWSKERYDEIESK---------------------MTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 226 viNK~D~~~~~~~~~~~~~i~~~---------------------l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+||+|+...+. .+.+...... +...+.+.+. ..+++++|++++.|+.++.+
T Consensus 168 v~nK~D~~~~~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~----~~~vi~iSa~~~~gl~~L~~ 240 (253)
T PRK13768 168 VLNKADLLSEEE-LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGL----PVRVIPVSAKTGEGFDELYA 240 (253)
T ss_pred EEEhHhhcCchh-HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCC----CCcEEEEECCCCcCHHHHHH
Confidence 999999943221 1112221221 1112333332 35899999999999998543
No 304
>PTZ00099 rab6; Provisional
Probab=99.05 E-value=9.1e-10 Score=101.78 Aligned_cols=106 Identities=20% Similarity=0.229 Sum_probs=70.2
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-HHc--CCCeEEEEEeeccCCC
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTL--GVTKLLLVVNKMDDHT 234 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~-~~~--~ip~~ivviNK~D~~~ 234 (513)
....+.|+||||+++|...+...++.+|++|+|+|++.... |+ ...+.+..+ +.. ++| +|+|.||+|+..
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~s---f~---~~~~w~~~i~~~~~~~~p-iilVgNK~DL~~ 99 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQS---FE---NTTKWIQDILNERGKDVI-IALVGNKTDLGD 99 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCe-EEEEEECccccc
Confidence 34678999999999998888888899999999999987521 11 222233222 322 456 899999999832
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. .... ++...+.... ...++++||++|.|+.++++
T Consensus 100 ~~--~v~~----~e~~~~~~~~------~~~~~e~SAk~g~nV~~lf~ 135 (176)
T PTZ00099 100 LR--KVTY----EEGMQKAQEY------NTMFHETSAKAGHNIKVLFK 135 (176)
T ss_pred cc--CCCH----HHHHHHHHHc------CCEEEEEECCCCCCHHHHHH
Confidence 11 0011 1112222332 24689999999999999754
No 305
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.03 E-value=6.1e-10 Score=95.72 Aligned_cols=151 Identities=17% Similarity=0.223 Sum_probs=102.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
...+|+|.+++|||+|+-++. ... |..+|++. .|+...+....+......+
T Consensus 9 fkllIigDsgVGKssLl~rF~--ddt--------------------Fs~sYitT-------iGvDfkirTv~i~G~~VkL 59 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFA--DDT--------------------FSGSYITT-------IGVDFKIRTVDINGDRVKL 59 (198)
T ss_pred HHHHeecCCcccHHHHHHHHh--hcc--------------------cccceEEE-------eeeeEEEEEeecCCcEEEE
Confidence 346799999999999986552 211 11122211 3443333334444455678
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCCCchHH
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKE 240 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~~~~~~ 240 (513)
.|+||+|+++|...+....+..+++++|.|.+.|.. | ..-++.+..++.. .+| -|+|-||.|.+.-
T Consensus 60 qIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ES---F---~Nv~rWLeei~~ncdsv~-~vLVGNK~d~~~R----- 127 (198)
T KOG0079|consen 60 QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGES---F---NNVKRWLEEIRNNCDSVP-KVLVGNKNDDPER----- 127 (198)
T ss_pred EEeecccHHHHHHHHHHHccCCceEEEEEECcchhh---h---HhHHHHHHHHHhcCcccc-ceecccCCCCccc-----
Confidence 999999999999999888999999999999998853 3 3556666666554 467 4689999998421
Q ss_pred HHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 241 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.--..++.+.+....| +.++.+||+...|++..+
T Consensus 128 -rvV~t~dAr~~A~~mg------ie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 128 -RVVDTEDARAFALQMG------IELFETSAKENENVEAMF 161 (198)
T ss_pred -eeeehHHHHHHHHhcC------chheehhhhhcccchHHH
Confidence 1122233444555554 579999999999998754
No 306
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.03 E-value=6.9e-10 Score=96.43 Aligned_cols=157 Identities=14% Similarity=0.181 Sum_probs=96.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
-..+++++|.--+|||+|+=+. -...+....+-.++. +|.. + + ..++....
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy--~EnkFn~kHlsTlQA------------SF~~--------k--k-----~n~ed~ra 62 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRY--VENKFNCKHLSTLQA------------SFQN--------K--K-----VNVEDCRA 62 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHH--HHhhcchhhHHHHHH------------HHhh--------c--c-----ccccccee
Confidence 3578999999999999998433 333222221111100 1111 0 1 11223345
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHH
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 240 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~ 240 (513)
.+.|+||+|+++|...---..+.+|.+|||.|.++.. .|+....+-..++.+....+. +++|-||+|+ . +
T Consensus 63 ~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrd---SFqKVKnWV~Elr~mlGnei~-l~IVGNKiDL--E----e 132 (218)
T KOG0088|consen 63 DLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRD---SFQKVKNWVLELRTMLGNEIE-LLIVGNKIDL--E----E 132 (218)
T ss_pred eeeeeeccchHhhhccCceEEeCCCceEEEEeccchH---HHHHHHHHHHHHHHHhCCeeE-EEEecCcccH--H----H
Confidence 7899999999999876666678999999999988742 233111222222222223355 7888999998 2 2
Q ss_pred HHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 241 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
...-..++...+....| ..++.+||+...||.++++
T Consensus 133 eR~Vt~qeAe~YAesvG------A~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 133 ERQVTRQEAEAYAESVG------ALYMETSAKDNVGISELFE 168 (218)
T ss_pred hhhhhHHHHHHHHHhhc------hhheecccccccCHHHHHH
Confidence 22334444555555554 4689999999999999765
No 307
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.00 E-value=1.7e-09 Score=102.64 Aligned_cols=99 Identities=11% Similarity=0.142 Sum_probs=58.2
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
+..+.||+|.|.-... .......+..+.|+|+..+.. .........+.+ .++++||+|+. +..
T Consensus 102 ~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~-----------~~~~~~~~~~~a-~iiv~NK~Dl~--~~~ 164 (207)
T TIGR00073 102 DIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDD-----------KPLKYPGMFKEA-DLIVINKADLA--EAV 164 (207)
T ss_pred CCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccc-----------hhhhhHhHHhhC-CEEEEEHHHcc--ccc
Confidence 4578999999931111 111124566788999986531 111222334567 68999999994 221
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.....+..+.+. +.+ ...+++++||++|.|+.++++
T Consensus 165 ~~~~~~~~~~l~----~~~----~~~~i~~~Sa~~g~gv~~l~~ 200 (207)
T TIGR00073 165 GFDVEKMKADAK----KIN----PEAEIILMSLKTGEGLDEWLE 200 (207)
T ss_pred hhhHHHHHHHHH----HhC----CCCCEEEEECCCCCCHHHHHH
Confidence 222333333333 222 136899999999999998543
No 308
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.99 E-value=3.6e-09 Score=106.25 Aligned_cols=103 Identities=18% Similarity=0.196 Sum_probs=61.3
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010318 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 157 ~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 236 (513)
..++.+.||||||...- ....+..+|.++++.+...+ ...+.+. -...+.| .++++||+|+....
T Consensus 124 ~~g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~----------~el~~~~-~~l~~~~-~ivv~NK~Dl~~~~ 188 (300)
T TIGR00750 124 AAGYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTG----------DDLQGIK-AGLMEIA-DIYVVNKADGEGAT 188 (300)
T ss_pred hCCCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCcc----------HHHHHHH-HHHhhhc-cEEEEEcccccchh
Confidence 35788999999996522 22346678999988665433 2222222 1234677 68899999994321
Q ss_pred chHHHHHHHHhh----hHhhhhh-ccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESK----MTPFLKA-SGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~----l~~~l~~-~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
....+... +..+... .++ ..+++++||++|.|+.++.+
T Consensus 189 ----~~~~~~~~~~~~l~~l~~~~~~~----~~~v~~iSA~~g~Gi~~L~~ 231 (300)
T TIGR00750 189 ----NVTIARLMLALALEEIRRREDGW----RPPVLTTSAVEGRGIDELWD 231 (300)
T ss_pred ----HHHHHHHHHHHHHhhccccccCC----CCCEEEEEccCCCCHHHHHH
Confidence 11111111 1111111 112 24699999999999999755
No 309
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.96 E-value=1e-08 Score=101.49 Aligned_cols=119 Identities=14% Similarity=0.097 Sum_probs=71.1
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
....++|+++|.+|+|||||+|+|+......... + .+.+...........
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~------------------------f------~s~t~~~~~~~~~~~ 84 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSA------------------------F------QSEGLRPMMVSRTRA 84 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccC------------------------C------CCcceeEEEEEEEEC
Confidence 3567899999999999999999996543221110 0 111111112233457
Q ss_pred CeEEEEEeCCCCcchH--HH-HHHhh------hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-cC---CCeEEE
Q 010318 159 TTRFTILDAPGHKSYV--PN-MISGA------SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG---VTKLLL 225 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~--~~-~~~~~------~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-~~---ip~~iv 225 (513)
+..+++|||||..+.. .. ....+ ..+|++|+|...+..-+ ....+..+..+.. +| -.++||
T Consensus 85 G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~------~~~DkqlLk~Iqe~FG~~iw~~~IV 158 (313)
T TIGR00991 85 GFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRV------DTLDGQVIRAITDSFGKDIWRKSLV 158 (313)
T ss_pred CeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccC------CHHHHHHHHHHHHHhhhhhhccEEE
Confidence 8999999999977541 11 11112 25899999965443211 1233444444433 23 235899
Q ss_pred EEeeccCC
Q 010318 226 VVNKMDDH 233 (513)
Q Consensus 226 viNK~D~~ 233 (513)
++|+.|..
T Consensus 159 VfTh~d~~ 166 (313)
T TIGR00991 159 VLTHAQFS 166 (313)
T ss_pred EEECCccC
Confidence 99999974
No 310
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.96 E-value=9.4e-09 Score=103.97 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=80.3
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCC--cchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcC---cEEEeee
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQ--VDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKG---KTVEVGR 152 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~--i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g---iTi~~~~ 152 (513)
.....+.|+++|++++|||||+++|...... +.+. +.++ +..|..+. ...| .|.+..+
T Consensus 13 RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~----~~k~------------Ra~DELpq-s~~GktItTTePkf 75 (492)
T TIGR02836 13 RTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNE----YDKE------------RAQDELPQ-SAAGKTIMTTEPKF 75 (492)
T ss_pred HhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccch----hHHh------------HHHhccCc-CCCCCCcccCCCcc
Confidence 4455689999999999999999999655321 1111 1010 01111110 1255 3444433
Q ss_pred ---EEEEe-----CCeEEEEEeCCCCcc-------------------------hHHH----HHHhhh-hcCEEEEEE-EC
Q 010318 153 ---AHFET-----ETTRFTILDAPGHKS-------------------------YVPN----MISGAS-QADIGVLVI-SA 193 (513)
Q Consensus 153 ---~~~~~-----~~~~i~liDtPGh~~-------------------------f~~~----~~~~~~-~~D~~ilVV-da 193 (513)
..++. -...+.||||+|..+ |... +...+. .+|++|+|. |+
T Consensus 76 vP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDg 155 (492)
T TIGR02836 76 VPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDG 155 (492)
T ss_pred ccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCC
Confidence 11221 236799999999422 2212 223345 899999999 87
Q ss_pred CCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 194 RKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 194 ~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
+-+..+..- ......+.+..++..+.| ||+++||.|-
T Consensus 156 si~dI~Re~-y~~aEe~~i~eLk~~~kP-fiivlN~~dp 192 (492)
T TIGR02836 156 TITDIPRED-YVEAEERVIEELKELNKP-FIILLNSTHP 192 (492)
T ss_pred Ccccccccc-chHHHHHHHHHHHhcCCC-EEEEEECcCC
Confidence 522111000 113567788899999999 9999999994
No 311
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.4e-08 Score=86.73 Aligned_cols=150 Identities=18% Similarity=0.222 Sum_probs=98.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+..+|.++|-.++||||++-.| ..+..+. .-.|+-.....+++.+
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKL--kl~~~~~--------------------------------~ipTvGFnvetVtykN 60 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKL--KLGQSVT--------------------------------TIPTVGFNVETVTYKN 60 (180)
T ss_pred cccceEEEEecccCCceehhhHH--hcCCCcc--------------------------------cccccceeEEEEEeee
Confidence 34678999999999999999887 3332111 1112222334466788
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH----HHcCCCeEEEEEeeccCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~----~~~~ip~~ivviNK~D~~~~ 235 (513)
..|+..|..|+.+..+.+.+......++|+|+|+....- + ...++.+.-+ ....++ ++|..||-|++.+
T Consensus 61 ~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr---~---eeAr~ELh~ii~~~em~~~~-~LvlANkQDlp~A 133 (180)
T KOG0071|consen 61 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR---I---EEARNELHRIINDREMRDAI-ILILANKQDLPDA 133 (180)
T ss_pred eEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhh---H---HHHHHHHHHHhCCHhhhcce-EEEEecCcccccc
Confidence 999999999999999999999999999999999876421 0 1122222111 122466 8888999999655
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 279 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~ 279 (513)
-- .+++.+.+. |..+ + ...+-+.|.||.+|+|+.+
T Consensus 134 ~~----pqei~d~le--Le~~--r-~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 134 MK----PQEIQDKLE--LERI--R-DRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred cC----HHHHHHHhc--cccc--c-CCccEeeccccccchhHHH
Confidence 31 223333221 1121 1 2356789999999999977
No 312
>PTZ00258 GTP-binding protein; Provisional
Probab=98.95 E-value=8.7e-09 Score=105.75 Aligned_cols=84 Identities=20% Similarity=0.146 Sum_probs=57.8
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC-
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~- 158 (513)
.....|+|+|.||+|||||+|+|...... .....+.|++.....+.+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~-------------------------------v~n~pftTi~p~~g~v~~~d 67 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVP-------------------------------AENFPFCTIDPNTARVNVPD 67 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCccc-------------------------------ccCCCCCcccceEEEEeccc
Confidence 45678999999999999999999322111 1111555655544444443
Q ss_pred ----------------CeEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECC
Q 010318 159 ----------------TTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISAR 194 (513)
Q Consensus 159 ----------------~~~i~liDtPGh~~-------f~~~~~~~~~~~D~~ilVVda~ 194 (513)
..++.|+||||... .....+..++.+|++++|||+.
T Consensus 68 ~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 68 ERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred chhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 23589999999532 3445566788999999999985
No 313
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.95 E-value=1.5e-08 Score=105.09 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=27.9
Q ss_pred eEEEEEeCCCCc----c---hHHHHHHhhhhcCEEEEEEECCC
Q 010318 160 TRFTILDAPGHK----S---YVPNMISGASQADIGVLVISARK 195 (513)
Q Consensus 160 ~~i~liDtPGh~----~---f~~~~~~~~~~~D~~ilVVda~~ 195 (513)
..+.|+||||.. . .....+..++.||++++|||+..
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 468999999952 2 33456667899999999999973
No 314
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.89 E-value=8.4e-09 Score=99.41 Aligned_cols=66 Identities=17% Similarity=0.115 Sum_probs=48.2
Q ss_pred eEEEEEeCCCCcc--------h----H-HHHHHhhh-hcCEEEEEEECCCCcccccccCCcch-HHHHHHHHHcCCCeEE
Q 010318 160 TRFTILDAPGHKS--------Y----V-PNMISGAS-QADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTLGVTKLL 224 (513)
Q Consensus 160 ~~i~liDtPGh~~--------f----~-~~~~~~~~-~~D~~ilVVda~~g~~e~~~~~~~qt-~e~l~~~~~~~ip~~i 224 (513)
..++||||||... . + ..+..++. ..+++++|+||..+.. .+. .+.++.+...+.+ .|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~-------~~d~l~ia~~ld~~~~r-ti 196 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLA-------NSDALKLAKEVDPQGER-TI 196 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCC-------chhHHHHHHHHHHcCCc-EE
Confidence 6799999999742 1 1 22334455 4569999999998743 444 5677777778888 88
Q ss_pred EEEeeccCC
Q 010318 225 LVVNKMDDH 233 (513)
Q Consensus 225 vviNK~D~~ 233 (513)
+|+||+|..
T Consensus 197 ~ViTK~D~~ 205 (240)
T smart00053 197 GVITKLDLM 205 (240)
T ss_pred EEEECCCCC
Confidence 999999994
No 315
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.89 E-value=6.6e-09 Score=105.47 Aligned_cols=148 Identities=20% Similarity=0.271 Sum_probs=82.7
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCc---EEEeeeEEEE
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGK---TVEVGRAHFE 156 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~gi---Ti~~~~~~~~ 156 (513)
...++|||+|.+|+|||||+|+|++... -+++ .-..|+ |... ..+.
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~-~d~~----------------------------aA~tGv~etT~~~--~~Y~ 81 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGH-EDEG----------------------------AAPTGVVETTMEP--TPYP 81 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--T-TSTT----------------------------S--SSSHSCCTS---EEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCC-CCcC----------------------------cCCCCCCcCCCCC--eeCC
Confidence 4668999999999999999999953211 0110 001222 2222 2233
Q ss_pred eCC-eEEEEEeCCCCc-------chHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010318 157 TET-TRFTILDAPGHK-------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (513)
Q Consensus 157 ~~~-~~i~liDtPGh~-------~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN 228 (513)
... .+++|+|.||.. .|+..+ .+...|+.|+|.+..-. ......+..++.+|.| +.+|-|
T Consensus 82 ~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~--~~~~yD~fiii~s~rf~---------~ndv~La~~i~~~gK~-fyfVRT 149 (376)
T PF05049_consen 82 HPKFPNVTLWDLPGIGTPNFPPEEYLKEV--KFYRYDFFIIISSERFT---------ENDVQLAKEIQRMGKK-FYFVRT 149 (376)
T ss_dssp -SS-TTEEEEEE--GGGSS--HHHHHHHT--TGGG-SEEEEEESSS-----------HHHHHHHHHHHHTT-E-EEEEE-
T ss_pred CCCCCCCeEEeCCCCCCCCCCHHHHHHHc--cccccCEEEEEeCCCCc---------hhhHHHHHHHHHcCCc-EEEEEe
Confidence 333 469999999952 344433 46788987776553321 3455566677788988 999999
Q ss_pred eccCC--------CCCchH-HHHHHHHhhhHhhhhhccCcccCCeeEEEeeccc
Q 010318 229 KMDDH--------TVNWSK-ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 273 (513)
Q Consensus 229 K~D~~--------~~~~~~-~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~ 273 (513)
|+|.. ...+++ ..++++.+.+..-|.+.|.. ..+++-+|...
T Consensus 150 KvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~---~P~VFLVS~~d 200 (376)
T PF05049_consen 150 KVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVS---EPQVFLVSSFD 200 (376)
T ss_dssp -HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-S---S--EEEB-TTT
T ss_pred cccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCC---cCceEEEeCCC
Confidence 99951 112333 33577777778888887765 56899999864
No 316
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.88 E-value=1e-08 Score=96.14 Aligned_cols=155 Identities=23% Similarity=0.200 Sum_probs=96.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCc-EEEeeeEEEEeCC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGK-TVEVGRAHFETET 159 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~gi-Ti~~~~~~~~~~~ 159 (513)
+..+|+++|..++|||+|+-++++..- .+. .+ +-+ +.......+....
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f--~~~----------------------y~-------ptied~y~k~~~v~~~~ 50 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRF--VED----------------------YD-------PTIEDSYRKELTVDGEV 50 (196)
T ss_pred CceEEEEECCCCCCcchheeeeccccc--ccc----------------------cC-------CCccccceEEEEECCEE
Confidence 457899999999999999977743211 100 00 000 0011112223334
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-cCCCeEEEEEeeccCCCCCch
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-~~ip~~ivviNK~D~~~~~~~ 238 (513)
..+.|+||+|.+.|..+....++.+|+-++|.+.++-. .|+...+.++.+...+. ..+| +|+|.||+|+... .
T Consensus 51 ~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~---SF~~~~~l~~~I~r~~~~~~~P-ivlVGNK~Dl~~~--R 124 (196)
T KOG0395|consen 51 CMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRS---SFEEAKQLREQILRVKGRDDVP-IILVGNKCDLERE--R 124 (196)
T ss_pred EEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHH---HHHHHHHHHHHHHHhhCcCCCC-EEEEEEcccchhc--c
Confidence 56789999999999999999999999999999988742 13322233343322222 2478 9999999999421 1
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. ..++-..+...+ .++|+.+||+...|+++++.
T Consensus 125 ~V----~~eeg~~la~~~------~~~f~E~Sak~~~~v~~~F~ 158 (196)
T KOG0395|consen 125 QV----SEEEGKALARSW------GCAFIETSAKLNYNVDEVFY 158 (196)
T ss_pred cc----CHHHHHHHHHhc------CCcEEEeeccCCcCHHHHHH
Confidence 11 111122223333 35799999999999998643
No 317
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.87 E-value=3.3e-08 Score=94.22 Aligned_cols=139 Identities=19% Similarity=0.247 Sum_probs=81.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
++|.++|..|+||||++|.|++....-. ......+|...........++.+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~-----------------------------~~~~~~~t~~~~~~~~~~~g~~v 51 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKS-----------------------------GSSAKSVTQECQKYSGEVDGRQV 51 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS-------------------------------TTTSS--SS-EEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceee-----------------------------ccccCCcccccceeeeeecceEE
Confidence 5899999999999999999965432100 00113445555555668899999
Q ss_pred EEEeCCCCcc-------hHHHHHHh----hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-cC---CCeEEEEE
Q 010318 163 TILDAPGHKS-------YVPNMISG----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LG---VTKLLLVV 227 (513)
Q Consensus 163 ~liDtPGh~~-------f~~~~~~~----~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-~~---ip~~ivvi 227 (513)
++|||||..+ ..+.+... ...++++|||+.+. . +....+..+..+.. +| ..++||++
T Consensus 52 ~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r-------~t~~~~~~l~~l~~~FG~~~~k~~ivvf 123 (212)
T PF04548_consen 52 TVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-R-------FTEEDREVLELLQEIFGEEIWKHTIVVF 123 (212)
T ss_dssp EEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B--------SHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred EEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-c-------chHHHHHHHHHHHHHccHHHHhHhhHHh
Confidence 9999999543 13333332 24689999999988 2 12355555554443 44 35689999
Q ss_pred eeccCCCCCchHHHHHHHH-hhhHhhhhhccC
Q 010318 228 NKMDDHTVNWSKERYDEIE-SKMTPFLKASGY 258 (513)
Q Consensus 228 NK~D~~~~~~~~~~~~~i~-~~l~~~l~~~g~ 258 (513)
|..|....+--.+.++.-. ..+..+++.++-
T Consensus 124 T~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~ 155 (212)
T PF04548_consen 124 THADELEDDSLEDYLKKESNEALQELIEKCGG 155 (212)
T ss_dssp EEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhccccccccHHHHHhccCchhHhHHhhhcCC
Confidence 9999854332111222122 346667776653
No 318
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=2.3e-08 Score=85.28 Aligned_cols=146 Identities=23% Similarity=0.290 Sum_probs=96.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--C
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 159 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~ 159 (513)
+..-.|+|..++|||.|+.++... .|+.|. + .-+-++.+...++.. .
T Consensus 11 ifkyiiigdmgvgkscllhqftek--------------------------kfmadc-p----htigvefgtriievsgqk 59 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEK--------------------------KFMADC-P----HTIGVEFGTRIIEVSGQK 59 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHH--------------------------HHhhcC-C----cccceecceeEEEecCcE
Confidence 467789999999999998777211 111121 1 223334444444444 4
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHH----HHHHcCCCe--EEEEEeeccCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM----LAKTLGVTK--LLLVVNKMDDH 233 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~----~~~~~~ip~--~ivviNK~D~~ 233 (513)
.++.|+||+|+++|..-+.+..+.+-.+++|.|.+.- .|-.|+. -++.+-.|+ ++++-||.|+
T Consensus 60 iklqiwdtagqerfravtrsyyrgaagalmvyditrr----------stynhlsswl~dar~ltnpnt~i~lignkadl- 128 (215)
T KOG0097|consen 60 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRR----------STYNHLSSWLTDARNLTNPNTVIFLIGNKADL- 128 (215)
T ss_pred EEEEEeecccHHHHHHHHHHHhccccceeEEEEehhh----------hhhhhHHHHHhhhhccCCCceEEEEecchhhh-
Confidence 5788999999999999888889999999999998864 4555553 234443343 4455699998
Q ss_pred CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
.+.....| ++...+..+.| ..|+..||++|.|+++.
T Consensus 129 -e~qrdv~y----eeak~faeeng------l~fle~saktg~nveda 164 (215)
T KOG0097|consen 129 -ESQRDVTY----EEAKEFAEENG------LMFLEASAKTGQNVEDA 164 (215)
T ss_pred -hhcccCcH----HHHHHHHhhcC------eEEEEecccccCcHHHH
Confidence 22122223 33344555544 47999999999999873
No 319
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.86 E-value=7.3e-09 Score=94.66 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=44.0
Q ss_pred CCeEEEEEeCCCCcch----HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010318 158 ETTRFTILDAPGHKSY----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 230 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f----~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 230 (513)
....+.|+||||..+. ...+...+..+|++|+|+++..... .+..+.+........+++|+|+||+
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~-------~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLT-------ESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGG-------GHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccc-------hHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 3456999999996432 2445555689999999999998743 2334444444444445589999995
No 320
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.83 E-value=1.7e-08 Score=96.33 Aligned_cols=161 Identities=16% Similarity=0.189 Sum_probs=100.1
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.+.++++|..|+|||+|+|.+++..... ..++ ...|-|+.+..+. -
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~-------------~t~k---------------~K~g~Tq~in~f~---v 181 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIA-------------DTSK---------------SKNGKTQAINHFH---V 181 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhh-------------hhcC---------------CCCccceeeeeee---c
Confidence 4567899999999999999999885432211 0000 0366676654443 3
Q ss_pred CeEEEEEeCCCC----------cchHHHHHHh---hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEE
Q 010318 159 TTRFTILDAPGH----------KSYVPNMISG---ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 225 (513)
Q Consensus 159 ~~~i~liDtPGh----------~~f~~~~~~~---~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~iv 225 (513)
+..+.++|.||. .++.+.+... -..-=-+.|+||+..++ ++.+...+..+...++| +.+
T Consensus 182 ~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i-------~~~D~~~i~~~ge~~VP-~t~ 253 (320)
T KOG2486|consen 182 GKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPI-------QPTDNPEIAWLGENNVP-MTS 253 (320)
T ss_pred cceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCC-------CCCChHHHHHHhhcCCC-eEE
Confidence 678999999992 2222222222 23344467889999884 47888999999999999 999
Q ss_pred EEeeccCCCCC--chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 226 VVNKMDDHTVN--WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 226 viNK~D~~~~~--~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
++||||....- ..+.....+...+..+.... | ....|++.+|+.++.|++.|.
T Consensus 254 vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~-f--~~~~Pw~~~Ssvt~~Grd~Ll 308 (320)
T KOG2486|consen 254 VFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV-F--LVDLPWIYVSSVTSLGRDLLL 308 (320)
T ss_pred eeehhhhhhhccccccCccccceeehhhccccc-e--eccCCceeeecccccCceeee
Confidence 99999972110 00000011111111111110 1 124578889999999999864
No 321
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.81 E-value=2e-08 Score=87.95 Aligned_cols=147 Identities=20% Similarity=0.228 Sum_probs=95.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcch---hHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDD---RTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~---~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.++.++|..-+|||+|+..+ +.|.... +++ +--.++.+ .|...|. .
T Consensus 9 frlivigdstvgkssll~~f--t~gkfaelsdptv------------gvdffarl-----ie~~pg~------------r 57 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYF--TEGKFAELSDPTV------------GVDFFARL-----IELRPGY------------R 57 (213)
T ss_pred EEEEEEcCCcccHHHHHHHH--hcCcccccCCCcc------------chHHHHHH-----HhcCCCc------------E
Confidence 67889999999999999866 4443221 110 00001111 1112222 2
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHH----H-HHcCCC---eEEEEEeecc
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----A-KTLGVT---KLLLVVNKMD 231 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~----~-~~~~ip---~~ivviNK~D 231 (513)
.++.++||+|+++|..-+.+..+++=++++|.|.++- ..-||+.. + ...+-| -|.+|-.|.|
T Consensus 58 iklqlwdtagqerfrsitksyyrnsvgvllvyditnr----------~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsD 127 (213)
T KOG0091|consen 58 IKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNR----------ESFEHVENWVKEAAMATQGPDKVVFLLVGHKSD 127 (213)
T ss_pred EEEEEeeccchHHHHHHHHHHhhcccceEEEEeccch----------hhHHHHHHHHHHHHHhcCCCCeeEEEEeccccc
Confidence 4688999999999999999999999999999998864 34444422 2 222312 2556679999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+. . ..+-..++-+.+.+..|+ .||.+||++|.|+++-+.
T Consensus 128 L~--S----qRqVt~EEaEklAa~hgM------~FVETSak~g~NVeEAF~ 166 (213)
T KOG0091|consen 128 LQ--S----QRQVTAEEAEKLAASHGM------AFVETSAKNGCNVEEAFD 166 (213)
T ss_pred hh--h----hccccHHHHHHHHHhcCc------eEEEecccCCCcHHHHHH
Confidence 93 2 222334555666777765 699999999999998543
No 322
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.81 E-value=1.6e-08 Score=79.26 Aligned_cols=68 Identities=34% Similarity=0.486 Sum_probs=61.1
Q ss_pred CeEEEEEEEeeeecCCCEEEEecC--CcE---EEEEEEEECCeeecccCCCCeEEEEeccCCccc-ceeeeEEc
Q 010318 324 GTVVMGKVESGSVREGDSLLVMPN--KAQ---VKVLAIYCDDNRVRHAGPGENLRIRLSGIEEED-ILSGFVLS 391 (513)
Q Consensus 324 G~vv~g~v~sG~l~~gd~v~~~p~--~~~---~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~-i~~G~vl~ 391 (513)
|++++|||.+|+|++||+|++.|. ... .+|++|+.++.....+.+|+.+++.+......+ +++||+||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 789999999999999999999773 244 999999999999999999999999888878888 89999986
No 323
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=3.8e-08 Score=86.64 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=99.3
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
++.-.+.++|--|+|||||+..|-. -.+. ..-.|.......+...+
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKd--Drl~--------------------------------qhvPTlHPTSE~l~Ig~ 63 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKD--DRLG--------------------------------QHVPTLHPTSEELSIGG 63 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcc--cccc--------------------------------ccCCCcCCChHHheecC
Confidence 4557899999999999999998821 1000 01223333444566678
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 235 (513)
..++-+|..||..-.+-+...+..+|+++++|||.+... | ...++++..+.. ..+| +++..||+|.+.+
T Consensus 64 m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er---~---~es~~eld~ll~~e~la~vp-~lilgnKId~p~a 136 (193)
T KOG0077|consen 64 MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQER---F---AESKKELDALLSDESLATVP-FLILGNKIDIPYA 136 (193)
T ss_pred ceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHH---h---HHHHHHHHHHHhHHHHhcCc-ceeecccccCCCc
Confidence 899999999998888878888889999999999987532 1 245556554443 3688 8899999999765
Q ss_pred CchHHHHHHHHhhhHhhhhhccC-c----ccCCeeEEEeeccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGY-N----VKKDVQFLPISGLMGLNMKT 279 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~-~----~~~~~~iipiSa~~g~gi~~ 279 (513)
- ++.++..... +.......+. . ....+.++.+|...+.|..+
T Consensus 137 ~-se~~l~~~l~-l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e 183 (193)
T KOG0077|consen 137 A-SEDELRFHLG-LSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGE 183 (193)
T ss_pred c-cHHHHHHHHH-HHHHhcccccccccCCCCCeEEEEEEEEEccCccce
Confidence 3 4433333222 2222221110 0 01134566777777666544
No 324
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.78 E-value=4.1e-08 Score=84.00 Aligned_cols=154 Identities=21% Similarity=0.232 Sum_probs=98.5
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|.++|--|+||||++.+|-.... + . .-+..|..+ ..+++.
T Consensus 14 t~rEirilllGldnAGKTT~LKqL~sED~----~--------------------h------ltpT~GFn~----k~v~~~ 59 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLKQLKSEDP----R--------------------H------LTPTNGFNT----KKVEYD 59 (185)
T ss_pred CcceEEEEEEecCCCcchhHHHHHccCCh----h--------------------h------ccccCCcce----EEEeec
Confidence 35679999999999999999998821110 0 0 011133322 345555
Q ss_pred C-eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCC
Q 010318 159 T-TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 ~-~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~ 234 (513)
+ .+++++|..|++....-+..+....|..|+|||+++.-+ |+ ....+...++.. ..+| +.+..||-|+..
T Consensus 60 g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~kr---fe--E~~~el~ELleeeKl~~vp-vlIfankQdllt 133 (185)
T KOG0074|consen 60 GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKR---FE--EISEELVELLEEEKLAEVP-VLIFANKQDLLT 133 (185)
T ss_pred CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHh---HH--HHHHHHHHHhhhhhhhccc-eeehhhhhHHHh
Confidence 4 899999999998888888888889999999999876533 22 222333333333 3578 778999999843
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+- ..+++...+.- .++. ...+.+-.+||++++|+...+
T Consensus 134 aa----~~eeia~klnl----~~lr-dRswhIq~csals~eg~~dg~ 171 (185)
T KOG0074|consen 134 AA----KVEEIALKLNL----AGLR-DRSWHIQECSALSLEGSTDGS 171 (185)
T ss_pred hc----chHHHHHhcch----hhhh-hceEEeeeCccccccCccCcc
Confidence 31 22233222221 1111 124678889999999998753
No 325
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.78 E-value=1.2e-08 Score=87.45 Aligned_cols=152 Identities=18% Similarity=0.207 Sum_probs=98.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
+..++-++|--|+||+|++-+| ..|.++. .-.|+......+++.+-
T Consensus 17 ~e~rililgldGaGkttIlyrl--qvgevvt--------------------------------tkPtigfnve~v~yKNL 62 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRL--QVGEVVT--------------------------------TKPTIGFNVETVPYKNL 62 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEc--ccCcccc--------------------------------cCCCCCcCccccccccc
Confidence 5578999999999999998666 3332221 22334444455677888
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCCc
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~~ 237 (513)
.+.++|..|......-+.......|.+|+|||..+-.. ....-.+...++.. .+ ..++|+.||+|...+
T Consensus 63 k~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dr-----is~a~~el~~mL~E~eLq~-a~llv~anKqD~~~~-- 134 (182)
T KOG0072|consen 63 KFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDR-----ISIAGVELYSMLQEEELQH-AKLLVFANKQDYSGA-- 134 (182)
T ss_pred cceeeEccCcccccHHHHHHhcccceEEEEEeccchhh-----hhhhHHHHHHHhccHhhcC-ceEEEEeccccchhh--
Confidence 99999999998888888888899999999999887421 00111222223322 24 348899999997432
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
...+++...|.-..++ +..+.+|.+||.+|+|+++..
T Consensus 135 ------~t~~E~~~~L~l~~Lk-~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 135 ------LTRSEVLKMLGLQKLK-DRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred ------hhHHHHHHHhChHHHh-hheeEEEeeccccccCCcHHH
Confidence 2222222222111111 124789999999999999853
No 326
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.78 E-value=6.1e-08 Score=76.62 Aligned_cols=78 Identities=33% Similarity=0.454 Sum_probs=68.2
Q ss_pred ceEEEEEEEc--cCCeEEEEEEEeeeecCCCEEEEec--CCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceee
Q 010318 312 FRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMP--NKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 387 (513)
Q Consensus 312 ~~~~i~~~~~--~~G~vv~g~v~sG~l~~gd~v~~~p--~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G 387 (513)
+++.|.++++ ..|.++.|+|.+|+|++||.+.+.| .....+|++|+.++.+++.+.||+.+++.+.... ++++|
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~~~~~~~~aG~~~~~~~~~~~--~~~~g 78 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFKGEVDEAVAGDIVGIVLKDKD--DIKIG 78 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecCceeceecCCCEEEEEEcccc--ccCCC
Confidence 3577888873 5789999999999999999999999 7788999999999999999999999999886433 78999
Q ss_pred eEEc
Q 010318 388 FVLS 391 (513)
Q Consensus 388 ~vl~ 391 (513)
++++
T Consensus 79 ~~l~ 82 (83)
T cd01342 79 DTLT 82 (83)
T ss_pred CEec
Confidence 9986
No 327
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.76 E-value=3e-08 Score=97.47 Aligned_cols=99 Identities=14% Similarity=0.197 Sum_probs=56.1
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
....+.||++-|.-..-.... + ..+.-+.|++..+|. .+.. ++-..+... -+++|||+|+ +++
T Consensus 183 ~~~d~liIEnvGnLvcPa~fd--l-ge~~~v~vlsV~eg~--------dkpl---Kyp~~f~~A-DIVVLNKiDL--l~~ 245 (290)
T PRK10463 183 DDNGILFIENVGNLVCPASFD--L-GEKHKVAVLSVTEGE--------DKPL---KYPHMFAAA-SLMLLNKVDL--LPY 245 (290)
T ss_pred cCCcEEEEECCCCccCCCccc--h-hhceeEEEEECcccc--------ccch---hccchhhcC-cEEEEEhHHc--Ccc
Confidence 345678888888421111100 1 123446778877762 1111 222333455 4689999999 443
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
....++.+.+.++.+. +..+++++||++|+|++++.
T Consensus 246 ~~~dle~~~~~lr~ln--------p~a~I~~vSA~tGeGld~L~ 281 (290)
T PRK10463 246 LNFDVEKCIACAREVN--------PEIEIILISATSGEGMDQWL 281 (290)
T ss_pred cHHHHHHHHHHHHhhC--------CCCcEEEEECCCCCCHHHHH
Confidence 3334444444443321 24689999999999999853
No 328
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.74 E-value=3.2e-08 Score=94.63 Aligned_cols=171 Identities=19% Similarity=0.131 Sum_probs=86.1
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcC------ccch-hhhhhccCchh---hhhcCcEE
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKS------RESW-YMAYIMDTNEE---ERIKGKTV 148 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g------~~s~-~~~~~~d~~~~---e~~~giTi 148 (513)
..+..+|+|.|.||+|||||+++|...... ....-+ .+.+ -.+.+-|...- ....|+=+
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~-----------~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfI 94 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRE-----------RGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFI 94 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHH-----------TT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEE
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhh-----------cCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEE
Confidence 346789999999999999999999543210 000000 0011 12223232221 11233322
Q ss_pred EeeeE----------------EEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH
Q 010318 149 EVGRA----------------HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV 212 (513)
Q Consensus 149 ~~~~~----------------~~~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l 212 (513)
-.... -++..++.+.||.|-|--.--- .-+..+|..++|+-...|.- -|....
T Consensus 95 RS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~-------iQ~~Ka- 163 (266)
T PF03308_consen 95 RSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDE-------IQAIKA- 163 (266)
T ss_dssp EEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCC-------CCTB-T-
T ss_pred eecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccH-------HHHHhh-
Confidence 11110 0222478899999998433221 22568999999999887742 232211
Q ss_pred HHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccC-cccCCeeEEEeecccccccccccc
Q 010318 213 MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY-NVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 213 ~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~-~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
-.+.+.. |+||||.|++.++ ....+++..+....- ......|++.+||.+|.|+++|.+
T Consensus 164 ---GimEiaD-i~vVNKaD~~gA~-------~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~ 223 (266)
T PF03308_consen 164 ---GIMEIAD-IFVVNKADRPGAD-------RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWE 223 (266)
T ss_dssp ---THHHH-S-EEEEE--SHHHHH-------HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHH
T ss_pred ---hhhhhcc-EEEEeCCChHHHH-------HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHH
Confidence 1112232 5799999984432 333444444432211 101135999999999999999754
No 329
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.70 E-value=1.9e-07 Score=99.84 Aligned_cols=118 Identities=19% Similarity=0.166 Sum_probs=71.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
-.++|+++|.+|+|||||+|.|+........ ....+.| ..........+.
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vs-----------------------------s~~~~TT-r~~ei~~~idG~ 166 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTD-----------------------------AFGMGTT-SVQEIEGLVQGV 166 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcccccccc-----------------------------CCCCCce-EEEEEEEEECCc
Confidence 3578999999999999999999654321110 0012322 333344556788
Q ss_pred EEEEEeCCCCcch------HHHHHH----hhh--hcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcC---CCeEE
Q 010318 161 RFTILDAPGHKSY------VPNMIS----GAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLG---VTKLL 224 (513)
Q Consensus 161 ~i~liDtPGh~~f------~~~~~~----~~~--~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~---ip~~i 224 (513)
.+.||||||..+. ...++. .+. .+|++|+|+....-.. .......+..+. .+| ..++|
T Consensus 167 ~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~------D~eD~~aLr~Iq~lFG~~Iwk~tI 240 (763)
T TIGR00993 167 KIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTR------DSNDLPLLRTITDVLGPSIWFNAI 240 (763)
T ss_pred eEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccc------cHHHHHHHHHHHHHhCHHhHcCEE
Confidence 9999999997653 122222 222 4798888876543210 012223333332 234 45689
Q ss_pred EEEeeccCCC
Q 010318 225 LVVNKMDDHT 234 (513)
Q Consensus 225 vviNK~D~~~ 234 (513)
|++|..|...
T Consensus 241 VVFThgD~lp 250 (763)
T TIGR00993 241 VTLTHAASAP 250 (763)
T ss_pred EEEeCCccCC
Confidence 9999999964
No 330
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=2.5e-08 Score=86.91 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=74.0
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~ 236 (513)
..+.++||+|+++|...+-.-.+.|-..+|+.|.+..- +| -.++..+..++.. .-|.+|++-||.|+ .+
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eq---SF---LnvrnWlSQL~~hAYcE~PDivlcGNK~DL--~~ 138 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQ---SF---LNVRNWLSQLQTHAYCENPDIVLCGNKADL--ED 138 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchH---HH---HHHHHHHHHHHHhhccCCCCEEEEcCccch--hh
Confidence 45789999999999998888889999999999977531 11 1344444444433 35779999999999 32
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+..-..++...+..++| +|++.+||-+|.|+.+-.+
T Consensus 139 ----~R~Vs~~qa~~La~kyg------lPYfETSA~tg~Nv~kave 174 (219)
T KOG0081|consen 139 ----QRVVSEDQAAALADKYG------LPYFETSACTGTNVEKAVE 174 (219)
T ss_pred ----hhhhhHHHHHHHHHHhC------CCeeeeccccCcCHHHHHH
Confidence 11122233444555665 4899999999999987544
No 331
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.69 E-value=1e-07 Score=92.34 Aligned_cols=104 Identities=19% Similarity=0.213 Sum_probs=61.7
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
.++.+.||.|-|--.---. -...+|..++|.=+.-|.- -|.. -.-.+.+- =|+||||+|+..++
T Consensus 142 aG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~-------~Q~i----K~GimEia-Di~vINKaD~~~A~- 205 (323)
T COG1703 142 AGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDD-------LQGI----KAGIMEIA-DIIVINKADRKGAE- 205 (323)
T ss_pred cCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcH-------HHHH----Hhhhhhhh-heeeEeccChhhHH-
Confidence 4677999999884332111 1457899999887766621 1211 12223444 26799999984442
Q ss_pred hHHHHHHHHhhhHhh---hhhccCcccCCeeEEEeeccccccccccccc
Q 010318 238 SKERYDEIESKMTPF---LKASGYNVKKDVQFLPISGLMGLNMKTRVDK 283 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~---l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~ 283 (513)
..+.++...+... -...++ ..|++.+||.+|+|+++|.+.
T Consensus 206 --~a~r~l~~al~~~~~~~~~~~W----~ppv~~t~A~~g~Gi~~L~~a 248 (323)
T COG1703 206 --KAARELRSALDLLREVWRENGW----RPPVVTTSALEGEGIDELWDA 248 (323)
T ss_pred --HHHHHHHHHHHhhcccccccCC----CCceeEeeeccCCCHHHHHHH
Confidence 2233333333221 223333 468999999999999997653
No 332
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.69 E-value=5e-08 Score=94.85 Aligned_cols=145 Identities=18% Similarity=0.188 Sum_probs=93.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEE-e
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-T 157 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~-~ 157 (513)
....+.|+++|-.|+|||||+++|. ......+.+++ .|.+....... .
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT-~Aal~p~drLF------------------------------ATLDpT~h~a~Lp 223 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALT-KAALYPNDRLF------------------------------ATLDPTLHSAHLP 223 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHH-hhhcCccchhh------------------------------eeccchhhhccCC
Confidence 3456899999999999999999994 22222222111 11221111111 2
Q ss_pred CCeEEEEEeCCCCcchHHH--------HHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCC------eE
Q 010318 158 ETTRFTILDAPGHKSYVPN--------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT------KL 223 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~--------~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip------~~ 223 (513)
++..+.|.||-|.-.-+.. ++.-...+|.+|.|+|.+++..| .|-...+..++.+|+| .+
T Consensus 224 sg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae------~q~e~Vl~vL~~igv~~~pkl~~m 297 (410)
T KOG0410|consen 224 SGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAE------EQRETVLHVLNQIGVPSEPKLQNM 297 (410)
T ss_pred CCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHH------HHHHHHHHHHHhcCCCcHHHHhHH
Confidence 4677899999996543322 33335689999999999998643 5667778888999986 34
Q ss_pred EEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 224 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 224 ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|=|=||+|.... +.+ .+..-.+++||++|+|+.++..
T Consensus 298 ieVdnkiD~e~~-~~e---------------------~E~n~~v~isaltgdgl~el~~ 334 (410)
T KOG0410|consen 298 IEVDNKIDYEED-EVE---------------------EEKNLDVGISALTGDGLEELLK 334 (410)
T ss_pred Hhhccccccccc-cCc---------------------cccCCccccccccCccHHHHHH
Confidence 556688886321 110 0011278999999999998543
No 333
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.68 E-value=5.5e-08 Score=90.28 Aligned_cols=153 Identities=16% Similarity=0.221 Sum_probs=108.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC-e
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-T 160 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~ 160 (513)
..+|.++|..|||||+|=..+.....+. +.+..|-||++...+...-+ .
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~------------------------------D~~rlg~tidveHsh~RflGnl 53 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIAR------------------------------DTRRLGATIDVEHSHVRFLGNL 53 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhh------------------------------hhhccCCcceeeehhhhhhhhh
Confidence 3678999999999999876553211110 22347888888777665544 6
Q ss_pred EEEEEeCCCCcchHHHHHHh-----hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-CCCeEEEEEeeccCCC
Q 010318 161 RFTILDAPGHKSYVPNMISG-----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDDHT 234 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~-----~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~-~ip~~ivviNK~D~~~ 234 (513)
.++++|+.|++.|+.+..+. .+..++.+.|.|+....+++.+. .....+..+... -..++++.+.|||+..
T Consensus 54 ~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~---~yqk~Le~ll~~SP~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 54 VLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFH---YYQKCLEALLQNSPEAKIFCLLHKMDLVQ 130 (295)
T ss_pred eeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHH---HHHHHHHHHHhcCCcceEEEEEeechhcc
Confidence 78999999999999888774 46899999999999888776654 444445444443 3345888999999987
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM 273 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~ 273 (513)
.+-.+..|+.-...+..+-+.++ +..+|+|-+.
T Consensus 131 ~d~r~~if~~r~~~l~~~s~~~~------~~~f~TsiwD 163 (295)
T KOG3886|consen 131 EDARELIFQRRKEDLRRLSRPLE------CKCFPTSIWD 163 (295)
T ss_pred cchHHHHHHHHHHHHHHhccccc------ccccccchhh
Confidence 77777777777666655443332 4577887643
No 334
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.66 E-value=5.3e-08 Score=91.73 Aligned_cols=99 Identities=16% Similarity=0.231 Sum_probs=57.2
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
+..+.||+|.|.. ...... -..+|.+|.|+|+.++. +... ......... =++++||+|+... .
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~---------~~~~--~~~~qi~~a-d~~~~~k~d~~~~--~ 153 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGD---------KIPR--KGGPGITRS-DLLVINKIDLAPM--V 153 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhh---------hhhh--hhHhHhhhc-cEEEEEhhhcccc--c
Confidence 4568899999931 111111 12368899999999873 1111 111122222 1689999999421 1
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
......+.+.++.+ + ...+++++||++|+|+.++.+
T Consensus 154 ~~~~~~~~~~~~~~----~----~~~~i~~~Sa~~g~gi~el~~ 189 (199)
T TIGR00101 154 GADLGVMERDAKKM----R----GEKPFIFTNLKTKEGLDTVID 189 (199)
T ss_pred cccHHHHHHHHHHh----C----CCCCEEEEECCCCCCHHHHHH
Confidence 22333334433332 2 246899999999999998543
No 335
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.65 E-value=4.7e-08 Score=96.14 Aligned_cols=80 Identities=15% Similarity=0.117 Sum_probs=53.2
Q ss_pred EEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC-----
Q 010318 85 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET----- 159 (513)
Q Consensus 85 v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~----- 159 (513)
|+|+|.||+|||||+|+|......+ ....+.|++.....+...+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~-------------------------------~n~pftTi~p~~g~v~v~d~r~~~ 49 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEA-------------------------------ANYPFCTIEPNVGIVPVPDERLDK 49 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCcc-------------------------------ccccccchhceeeeEEeccchhhh
Confidence 5899999999999999994322111 1114455444433333332
Q ss_pred ------------eEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCC
Q 010318 160 ------------TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 195 (513)
Q Consensus 160 ------------~~i~liDtPGh~~-------f~~~~~~~~~~~D~~ilVVda~~ 195 (513)
..+.|+|+||..+ .....+..++.+|++++|||+..
T Consensus 50 l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 50 LAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred HHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 2599999999432 34455666789999999999853
No 336
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.65 E-value=8.1e-09 Score=87.25 Aligned_cols=104 Identities=19% Similarity=0.256 Sum_probs=70.5
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCC
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 234 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~ 234 (513)
...++.++||+|+++|..-+....+.+|+.+|+.|..... +|+ ..+..+..+..+ .+. +.++-||+|+..
T Consensus 45 ~kvklqiwdtagqerfrsvt~ayyrda~allllydianka---sfd---n~~~wlsei~ey~k~~v~-l~llgnk~d~a~ 117 (192)
T KOG0083|consen 45 KKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKA---SFD---NCQAWLSEIHEYAKEAVA-LMLLGNKCDLAH 117 (192)
T ss_pred cEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccch---hHH---HHHHHHHHHHHHHHhhHh-Hhhhccccccch
Confidence 4467899999999999999999999999999999976542 232 334444444433 355 677899999832
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
. +.- -.++=..+.+.+| +||+.+||++|-|++--
T Consensus 118 e-----r~v-~~ddg~kla~~y~------ipfmetsaktg~nvd~a 151 (192)
T KOG0083|consen 118 E-----RAV-KRDDGEKLAEAYG------IPFMETSAKTGFNVDLA 151 (192)
T ss_pred h-----hcc-ccchHHHHHHHHC------CCceeccccccccHhHH
Confidence 1 100 0111122333443 58999999999999863
No 337
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=98.63 E-value=3.6e-07 Score=71.75 Aligned_cols=75 Identities=23% Similarity=0.413 Sum_probs=59.0
Q ss_pred CCceEEEEEE--EccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceee
Q 010318 310 GPFRMPIIDK--FKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 387 (513)
Q Consensus 310 ~~~~~~i~~~--~~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G 387 (513)
.|.++.|... |..++ ++.|+|..|+|++|..| .+..-.+|++|+.+++++++|.+|+.|++.+.|.. ++..|
T Consensus 3 ~p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l---~G~~iG~I~sIe~~~k~v~~A~~G~eVai~Ieg~~--~i~eG 76 (81)
T PF14578_consen 3 RPGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL---DGRKIGRIKSIEDNGKNVDEAKKGDEVAISIEGPT--QIKEG 76 (81)
T ss_dssp -SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE---CSSCEEEEEEEEETTEEESEEETT-EEEEEEET----TB-TT
T ss_pred CceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc---CCEEEEEEEEeEECCcCccccCCCCEEEEEEeCCc--cCCCC
Confidence 4566667654 46777 77789999999999999 55578899999999999999999999999999854 79999
Q ss_pred eEE
Q 010318 388 FVL 390 (513)
Q Consensus 388 ~vl 390 (513)
|+|
T Consensus 77 DiL 79 (81)
T PF14578_consen 77 DIL 79 (81)
T ss_dssp -EE
T ss_pred CEE
Confidence 987
No 338
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.62 E-value=1e-07 Score=96.78 Aligned_cols=82 Identities=16% Similarity=0.138 Sum_probs=54.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC---
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--- 159 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--- 159 (513)
++|+++|.||+|||||+|+|......+ ....+.|++.....+...+
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v-------------------------------~nypftTi~p~~G~~~v~d~r~ 51 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEA-------------------------------ANYPFCTIEPNVGVVPVPDPRL 51 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCee-------------------------------cccccccccceEEEEEeccccc
Confidence 689999999999999999994322111 1114445444333332222
Q ss_pred --------------eEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCC
Q 010318 160 --------------TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 195 (513)
Q Consensus 160 --------------~~i~liDtPGh~~-------f~~~~~~~~~~~D~~ilVVda~~ 195 (513)
..+.|+|+||... .....+..++.||++++|||+..
T Consensus 52 ~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 52 DKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred hhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 3599999999432 34456666889999999999853
No 339
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.59 E-value=7e-07 Score=88.52 Aligned_cols=142 Identities=16% Similarity=0.270 Sum_probs=80.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC--
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-- 159 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-- 159 (513)
.++|.++|..|+|||||+|.|+.......... .+.......+...+......+..++
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~l~e~~~~ 62 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSS---------------------IPPPSASISRTLEIEERTVELEENGVK 62 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS------------------------------S------SCEEEEEEEEEEEETCEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhccccccccc---------------------ccccccccccccceeeEEEEeccCCcc
Confidence 47999999999999999999965322211100 0000011123344444444444443
Q ss_pred eEEEEEeCCCCcch-------------HHHHHHh-h-------------hhcCEEEEEEECCC-CcccccccCCcchHHH
Q 010318 160 TRFTILDAPGHKSY-------------VPNMISG-A-------------SQADIGVLVISARK-GEFETGFEKGGQTREH 211 (513)
Q Consensus 160 ~~i~liDtPGh~~f-------------~~~~~~~-~-------------~~~D~~ilVVda~~-g~~e~~~~~~~qt~e~ 211 (513)
..++|+||||+.+. +...... + ...|++|+.|+++. |. ....
T Consensus 63 l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L----------~~~D 132 (281)
T PF00735_consen 63 LNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGL----------KPLD 132 (281)
T ss_dssp EEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-----------HHH
T ss_pred eEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccc----------hHHH
Confidence 46899999996432 1111110 0 25799999999864 42 2333
Q ss_pred HHHHHHcC--CCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCc
Q 010318 212 VMLAKTLG--VTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 259 (513)
Q Consensus 212 l~~~~~~~--ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~ 259 (513)
+..++.+. ++ +|-||.|.|.. ..+.+...+..+...|...++.
T Consensus 133 i~~mk~Ls~~vN-vIPvIaKaD~l----t~~el~~~k~~i~~~l~~~~I~ 177 (281)
T PF00735_consen 133 IEFMKRLSKRVN-VIPVIAKADTL----TPEELQAFKQRIREDLEENNIK 177 (281)
T ss_dssp HHHHHHHTTTSE-EEEEESTGGGS-----HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHhccccc-EEeEEeccccc----CHHHHHHHHHHHHHHHHHcCce
Confidence 44444442 55 99999999983 4567888888888888877654
No 340
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.51 E-value=3.3e-07 Score=86.12 Aligned_cols=88 Identities=25% Similarity=0.277 Sum_probs=60.0
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
+...-+|+++|-|.+|||||+..+..+... + ..|.| .|.......+.++
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~Se------------a-------A~yeF------------TTLtcIpGvi~y~ 107 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSE------------A-------ASYEF------------TTLTCIPGVIHYN 107 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhh------------h-------hceee------------eEEEeecceEEec
Confidence 345578999999999999999887221110 0 00111 2333334457788
Q ss_pred CeEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCc
Q 010318 159 TTRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGE 197 (513)
Q Consensus 159 ~~~i~liDtPGh~~-------f~~~~~~~~~~~D~~ilVVda~~g~ 197 (513)
+..|.++|.||.-. .-+..++.++.||.++.|+||+.+.
T Consensus 108 ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 108 GANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred CceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcch
Confidence 99999999999522 2344556678999999999999863
No 341
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.44 E-value=3.8e-08 Score=87.49 Aligned_cols=155 Identities=20% Similarity=0.171 Sum_probs=97.1
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...+.++|+|+-++||||++.+. -.|.+..+.- .+ .|+..-.....+..++
T Consensus 18 e~aiK~vivGng~VGKssmiqry--CkgifTkdyk------------kt---------------Igvdflerqi~v~~Ed 68 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRY--CKGIFTKDYK------------KT---------------IGVDFLERQIKVLIED 68 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHH--hccccccccc------------cc---------------cchhhhhHHHHhhHHH
Confidence 35689999999999999999866 3344332210 00 1110000011122345
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH--HcCCCeEEEEEeeccCCCCCc
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~--~~~ip~~ivviNK~D~~~~~~ 237 (513)
.++.++||+|++.|-.-+....+.|.+.+||.+.++-. .|+ .+.+...-.. ...+| .+++-||+|+ .+.
T Consensus 69 vr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~---SFe---a~~~w~~kv~~e~~~IP-tV~vqNKIDl--ved 139 (246)
T KOG4252|consen 69 VRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRY---SFE---ATLEWYNKVQKETERIP-TVFVQNKIDL--VED 139 (246)
T ss_pred HHHHHHHhccchhHHHHHHHHhccccceEEEEecccHH---HHH---HHHHHHHHHHHHhccCC-eEEeeccchh--hHh
Confidence 67889999999999888878888999999999987642 122 3333333222 34699 7889999999 432
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+. --..++..+.+.+. ..++.+|++..-|+...+.
T Consensus 140 s~----~~~~evE~lak~l~------~RlyRtSvked~NV~~vF~ 174 (246)
T KOG4252|consen 140 SQ----MDKGEVEGLAKKLH------KRLYRTSVKEDFNVMHVFA 174 (246)
T ss_pred hh----cchHHHHHHHHHhh------hhhhhhhhhhhhhhHHHHH
Confidence 22 12233333444432 3688999999999887543
No 342
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.44 E-value=2.8e-06 Score=77.71 Aligned_cols=94 Identities=17% Similarity=0.221 Sum_probs=54.1
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcC-EEEEEEECCCCcccccccCCcchHH-HHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQAD-IGVLVISARKGEFETGFEKGGQTRE-HVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D-~~ilVVda~~g~~e~~~~~~~qt~e-~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
..+.||...| ....... -...| .-|+|||..+|.- .-+. +=.+ .. . =+++|||.|+ +.+
T Consensus 97 ~Dll~iEs~G--NL~~~~s--p~L~d~~~v~VidvteGe~--------~P~K~gP~i---~~-a-DllVInK~DL--a~~ 157 (202)
T COG0378 97 LDLLFIESVG--NLVCPFS--PDLGDHLRVVVIDVTEGED--------IPRKGGPGI---FK-A-DLLVINKTDL--APY 157 (202)
T ss_pred CCEEEEecCc--ceecccC--cchhhceEEEEEECCCCCC--------CcccCCCce---eE-e-eEEEEehHHh--HHH
Confidence 4688999999 2221111 12345 8899999999852 0000 0000 01 1 2689999999 332
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
-....+...+..+ +. +++.|||.+|+++|+|++++
T Consensus 158 v~~dlevm~~da~----~~----np~~~ii~~n~ktg~G~~~~ 192 (202)
T COG0378 158 VGADLEVMARDAK----EV----NPEAPIIFTNLKTGEGLDEW 192 (202)
T ss_pred hCccHHHHHHHHH----Hh----CCCCCEEEEeCCCCcCHHHH
Confidence 2222222222222 21 24679999999999999884
No 343
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.44 E-value=9.7e-07 Score=90.54 Aligned_cols=153 Identities=16% Similarity=0.226 Sum_probs=86.0
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...+++.++|-||+|||++++.+......+. .|+|. |-.+-..++.+.=
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevq-------------------pYaFT------------TksL~vGH~dykY 214 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQ-------------------PYAFT------------TKLLLVGHLDYKY 214 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccC-------------------Ccccc------------cchhhhhhhhhhe
Confidence 4568899999999999999987722111110 11111 1111112233344
Q ss_pred eEEEEEeCCCCcch------HHHH--HHhh-hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEE
Q 010318 160 TRFTILDAPGHKSY------VPNM--ISGA-SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLL 225 (513)
Q Consensus 160 ~~i~liDtPGh~~f------~~~~--~~~~-~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~iv 225 (513)
.++.++||||.-+- +-+| +.++ ..--+++++.|-++- + |++ ..+.+.+... .+.| +|+
T Consensus 215 lrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~-C--GyS----va~QvkLfhsIKpLFaNK~-~Il 286 (620)
T KOG1490|consen 215 LRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEM-C--GYS----VAAQVKLYHSIKPLFANKV-TIL 286 (620)
T ss_pred eeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhh-h--CCC----HHHHHHHHHHhHHHhcCCc-eEE
Confidence 57899999995443 1111 2232 344568889997752 1 222 2333333332 2456 899
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 226 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 226 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
|+||+|...... +.+-.+++...+..- ++++++.+|..+-+|+-.+
T Consensus 287 vlNK~D~m~~ed----L~~~~~~ll~~~~~~-----~~v~v~~tS~~~eegVm~V 332 (620)
T KOG1490|consen 287 VLNKIDAMRPED----LDQKNQELLQTIIDD-----GNVKVVQTSCVQEEGVMDV 332 (620)
T ss_pred EeecccccCccc----cCHHHHHHHHHHHhc-----cCceEEEecccchhceeeH
Confidence 999999854321 112222222233332 2578999999999999763
No 344
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=98.43 E-value=1.6e-06 Score=69.67 Aligned_cols=75 Identities=15% Similarity=0.226 Sum_probs=59.8
Q ss_pred EEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----CeeecccCCCCeEEEEeccCCcccceee
Q 010318 314 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 387 (513)
Q Consensus 314 ~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G 387 (513)
..|.+++ +..|.+..+||.+|+|++||.|.+...+...+|..|... ..++++|.|||++++ .|+ .+++.|
T Consensus 3 a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~gl--~~~~~G 78 (83)
T cd04092 3 ALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVI--TGL--KQTRTG 78 (83)
T ss_pred EEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEE--ECC--CCcccC
Confidence 4555555 346999999999999999999988776666788888654 578999999999995 665 348899
Q ss_pred eEEcc
Q 010318 388 FVLSS 392 (513)
Q Consensus 388 ~vl~~ 392 (513)
|+|+.
T Consensus 79 dtl~~ 83 (83)
T cd04092 79 DTLVT 83 (83)
T ss_pred CEEeC
Confidence 99873
No 345
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=98.42 E-value=1.4e-06 Score=70.27 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=61.9
Q ss_pred CCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----CeeecccCCCCeEEEEeccCCccc
Q 010318 310 GPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEED 383 (513)
Q Consensus 310 ~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~~ 383 (513)
.||.+.|..+. +..|.+.++||.+|+|+.||.|+... ....+|.+|+.. ..++++|.|||+|++ .++ .+
T Consensus 2 ~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai--~gl--~~ 76 (85)
T cd03690 2 SELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAIL--TGL--KG 76 (85)
T ss_pred CCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEE--ECC--CC
Confidence 57888888876 35699999999999999999998755 445677788654 468999999999995 555 34
Q ss_pred ceeeeEEc
Q 010318 384 ILSGFVLS 391 (513)
Q Consensus 384 i~~G~vl~ 391 (513)
++.||+|+
T Consensus 77 ~~~Gdtl~ 84 (85)
T cd03690 77 LRVGDVLG 84 (85)
T ss_pred CcCccccC
Confidence 77899885
No 346
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=98.41 E-value=2e-06 Score=69.01 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=60.3
Q ss_pred EEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----CeeecccCCCCeEEEEeccCCcccceee
Q 010318 314 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 387 (513)
Q Consensus 314 ~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G 387 (513)
..|..++ +..|.++.+||.+|+|++||.|.+...+...+|.+|... ..++++|.|||++.+ .|++ +++.|
T Consensus 3 a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i--~g~~--~~~~G 78 (83)
T cd04088 3 ALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAV--AGLK--DTATG 78 (83)
T ss_pred EEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEE--ECCC--CCccC
Confidence 3455554 346999999999999999999998877777888888654 568999999999996 6654 38899
Q ss_pred eEEcc
Q 010318 388 FVLSS 392 (513)
Q Consensus 388 ~vl~~ 392 (513)
|+|++
T Consensus 79 dtl~~ 83 (83)
T cd04088 79 DTLCD 83 (83)
T ss_pred CEeeC
Confidence 99863
No 347
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.37 E-value=9.4e-07 Score=92.33 Aligned_cols=158 Identities=16% Similarity=0.140 Sum_probs=94.7
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
..++.++|+++|..|+|||+|+=+|+...-. +.- --+-.-++|- ..+..
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~---------------------------~~V-P~rl~~i~IP---advtP 53 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFV---------------------------DAV-PRRLPRILIP---ADVTP 53 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhcc---------------------------ccc-cccCCccccC---CccCc
Confidence 3467799999999999999999888543211 000 0011223433 22333
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-----CCCeEEEEEeeccC
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKLLLVVNKMDD 232 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~-----~ip~~ivviNK~D~ 232 (513)
+.....++||+-.++-.......++.||++++|.+.++... ++.-+...|=+.+.+ ++| +|+|-||+|.
T Consensus 54 e~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T-----~D~ist~WLPlir~~~~~~~~~P-VILvGNK~d~ 127 (625)
T KOG1707|consen 54 ENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDEST-----VDRISTKWLPLIRQLFGDYHETP-VILVGNKSDN 127 (625)
T ss_pred CcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHH-----hhhhhhhhhhhhhcccCCCccCC-EEEEeeccCC
Confidence 44558999998766655555667899999999999887532 223333444455554 478 9999999998
Q ss_pred CCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
...+ ....+....-|...++++ -.-|.+||++-.|+.+++
T Consensus 128 ~~~~--~~s~e~~~~pim~~f~Ei-------EtciecSA~~~~n~~e~f 167 (625)
T KOG1707|consen 128 GDNE--NNSDEVNTLPIMIAFAEI-------ETCIECSALTLANVSELF 167 (625)
T ss_pred cccc--ccchhHHHHHHHHHhHHH-------HHHHhhhhhhhhhhHhhh
Confidence 4222 111111111111122221 145677888888887764
No 348
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=98.36 E-value=4.4e-06 Score=67.50 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=60.8
Q ss_pred ceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC---CeeecccCCCCeEEEEeccC-Ccccce
Q 010318 312 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDIL 385 (513)
Q Consensus 312 ~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~---~~~v~~a~aG~~v~i~l~~~-~~~~i~ 385 (513)
|.+.|..+. +..|.++.+||.+|+|+.||.|++...+...+|..|... ..+++++.|||++++. .++ ...+++
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~~~~~~~~~~~~aGdI~~v~-~g~~~l~~~~ 79 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIFRPEMTPTDELSAGQVGYII-AGIKTVKDAR 79 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEECCCccCCceECCCCEEEEE-ccccccCccc
Confidence 345666665 356999999999999999999988776666777777754 4688999999999973 222 124588
Q ss_pred eeeEEcc
Q 010318 386 SGFVLSS 392 (513)
Q Consensus 386 ~G~vl~~ 392 (513)
.||+|+.
T Consensus 80 ~Gdtl~~ 86 (86)
T cd03699 80 VGDTITL 86 (86)
T ss_pred cccEeeC
Confidence 9999873
No 349
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.34 E-value=6.4e-07 Score=81.08 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=39.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
+..+|+++|.+|+|||||+|+|+...... .....|.|........ +.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~------------------------------~~~~~g~T~~~~~~~~---~~ 147 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCK------------------------------VAPIPGETKVWQYITL---MK 147 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCcee------------------------------eCCCCCeeEeEEEEEc---CC
Confidence 45789999999999999999996432211 1223667765543332 34
Q ss_pred EEEEEeCCCC
Q 010318 161 RFTILDAPGH 170 (513)
Q Consensus 161 ~i~liDtPGh 170 (513)
.+.|+||||.
T Consensus 148 ~~~liDtPGi 157 (157)
T cd01858 148 RIYLIDCPGV 157 (157)
T ss_pred CEEEEECcCC
Confidence 5899999993
No 350
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=98.34 E-value=4.8e-06 Score=67.28 Aligned_cols=76 Identities=22% Similarity=0.417 Sum_probs=59.1
Q ss_pred ceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC---cEEEEEEEEEC----CeeecccCCCCeEEEEeccCCcc
Q 010318 312 FRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEE 382 (513)
Q Consensus 312 ~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~---~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~ 382 (513)
|++.|.++. +..|.++++||.+|+|++||+|.+...+ ...+|.+|... ..+++++.|||+++ +.++ .
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~--i~gl--~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVA--IAGI--E 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEE--EECC--C
Confidence 467777765 4569999999999999999999876552 24677787543 46899999999997 5655 3
Q ss_pred cceeeeEEc
Q 010318 383 DILSGFVLS 391 (513)
Q Consensus 383 ~i~~G~vl~ 391 (513)
+++.|++|+
T Consensus 77 ~~~~Gdtl~ 85 (86)
T cd03691 77 DITIGDTIC 85 (86)
T ss_pred CCcccceec
Confidence 578999885
No 351
>PRK14974 cell division protein FtsY; Provisional
Probab=98.33 E-value=9.7e-06 Score=82.15 Aligned_cols=94 Identities=15% Similarity=0.202 Sum_probs=56.7
Q ss_pred CCeEEEEEeCCCCcchHHHHHHh------hhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-HHcCCCeEEEEEeec
Q 010318 158 ETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLLLVVNKM 230 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~------~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~-~~~~ip~~ivviNK~ 230 (513)
.++.+.||||||....-...+.. ...+|..+||+||..| ....+.+... ...++. - +++||+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g---------~d~~~~a~~f~~~~~~~-g-iIlTKl 289 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG---------NDAVEQAREFNEAVGID-G-VILTKV 289 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc---------hhHHHHHHHHHhcCCCC-E-EEEeee
Confidence 35679999999976432222222 2368999999999876 2333333333 346776 3 589999
Q ss_pred cCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 231 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 231 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
|.... + -.+.+.. ... ..|+..++ +|++++++
T Consensus 290 D~~~~-~-----G~~ls~~----~~~------~~Pi~~i~--~Gq~v~Dl 321 (336)
T PRK14974 290 DADAK-G-----GAALSIA----YVI------GKPILFLG--VGQGYDDL 321 (336)
T ss_pred cCCCC-c-----cHHHHHH----HHH------CcCEEEEe--CCCChhhc
Confidence 98321 1 1122211 112 34777777 69999775
No 352
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.32 E-value=3.2e-06 Score=73.74 Aligned_cols=159 Identities=15% Similarity=0.202 Sum_probs=108.1
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..-.+.|+++|.+..|||||+-.... +..++. -+...|+..--...++...
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~--~~~de~---------------------------~~q~~GvN~mdkt~~i~~t 67 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQ--NEYDEE---------------------------YTQTLGVNFMDKTVSIRGT 67 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhc--chhHHH---------------------------HHHHhCccceeeEEEecce
Confidence 34568999999999999999743321 110000 0112344332233334444
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC---CCeEEEEEeeccCCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG---VTKLLLVVNKMDDHTV 235 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~---ip~~ivviNK~D~~~~ 235 (513)
...|.++|..|+++|..+.--+...+=+++++.|-+.... -...++..++++.++ +| |++-+|.|.. .
T Consensus 68 ~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~T------LnSi~~WY~QAr~~NktAiP--ilvGTKyD~f-i 138 (205)
T KOG1673|consen 68 DISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRST------LNSIKEWYRQARGLNKTAIP--ILVGTKYDLF-I 138 (205)
T ss_pred EEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHH------HHHHHHHHHHHhccCCccce--EEeccchHhh-h
Confidence 5678999999999998887777778888999999876532 123456667777775 66 5789999974 4
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+.+.+....+..+-+.+.+-+ +.+.+.+|+.+..|+.+.+
T Consensus 139 ~lp~e~Q~~I~~qar~YAk~m------nAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 139 DLPPELQETISRQARKYAKVM------NASLFFCSTSHSINVQKIF 178 (205)
T ss_pred cCCHHHHHHHHHHHHHHHHHh------CCcEEEeeccccccHHHHH
Confidence 455566667777777777765 3579999999999998854
No 353
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=7.2e-06 Score=87.25 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=47.9
Q ss_pred EEEEEeCCCCc---chHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCC
Q 010318 161 RFTILDAPGHK---SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 233 (513)
Q Consensus 161 ~i~liDtPGh~---~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 233 (513)
.+.++|.||.. .+..-...-.-.+|+.|||+.|....+ ++..++......+.|+++|+.||+|..
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt--------~sek~Ff~~vs~~KpniFIlnnkwDas 274 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLT--------LSEKQFFHKVSEEKPNIFILNNKWDAS 274 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhH--------HHHHHHHHHhhccCCcEEEEechhhhh
Confidence 58999999953 233333334568999999999987643 666666666666688899999999984
No 354
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=98.28 E-value=6.6e-06 Score=65.67 Aligned_cols=73 Identities=19% Similarity=0.304 Sum_probs=58.2
Q ss_pred EEEEEE-ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----CeeecccCCCCeEEEEeccCCcccceeeeE
Q 010318 315 PIIDKF-KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFV 389 (513)
Q Consensus 315 ~i~~~~-~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~v 389 (513)
.|..+. ...|.++.+||.+|+|++||.|+....+...+|..|... ..+++++.|||+++ +.++ . ++.||+
T Consensus 4 ~vfK~~~~~~G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~--i~g~--~-~~~Gdt 78 (81)
T cd04091 4 LAFKLEEGRFGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICA--IFGI--D-CASGDT 78 (81)
T ss_pred EEEEeecCCCCCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEE--EECC--C-cccCCE
Confidence 344443 224999999999999999999999887777888888654 46899999999999 5554 3 789999
Q ss_pred Ecc
Q 010318 390 LSS 392 (513)
Q Consensus 390 l~~ 392 (513)
|++
T Consensus 79 l~~ 81 (81)
T cd04091 79 FTD 81 (81)
T ss_pred ecC
Confidence 863
No 355
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.28 E-value=9.9e-06 Score=77.83 Aligned_cols=120 Identities=14% Similarity=0.047 Sum_probs=70.1
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+...|+|+|.+++|||||+|+|+.....+.- . .......+|+-+....... ..
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~----------------------~--~~~~~~T~gi~~~~~~~~~-~~ 58 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDV----------------------M--DTSQQTTKGIWMWSVPFKL-GK 58 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEe----------------------c--CCCCCCccceEEEeccccC-CC
Confidence 456788999999999999999999654211100 0 0001111344332211111 24
Q ss_pred CeEEEEEeCCCCcch------HHHHHHhhhh--cCEEEEEEECCCCcccccccCCcchHHHHHHHHH-------------
Q 010318 159 TTRFTILDAPGHKSY------VPNMISGASQ--ADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------------- 217 (513)
Q Consensus 159 ~~~i~liDtPGh~~f------~~~~~~~~~~--~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~------------- 217 (513)
+..+.|+||||..+. ....+.++.. +|++|+.++...- .+....+..+..
T Consensus 59 ~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~~---------~~~~~~l~~~~~~~~~~~~~~~~~~ 129 (224)
T cd01851 59 EHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETIL---------GDDLAALMGLLKTTLEVLGLAGLTE 129 (224)
T ss_pred cceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCccc---------HHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 678999999995432 3334555555 9999999987642 233333332221
Q ss_pred --cCCCeEEEEEeeccC
Q 010318 218 --LGVTKLLLVVNKMDD 232 (513)
Q Consensus 218 --~~ip~~ivviNK~D~ 232 (513)
...|+++.++..++.
T Consensus 130 ~~~~~p~ll~vvRD~~~ 146 (224)
T cd01851 130 FEKPKPLLLFVVRDFSL 146 (224)
T ss_pred cccCCCceEEEEecCcC
Confidence 135678889887776
No 356
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.28 E-value=9.9e-07 Score=81.07 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=41.3
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
....+++++|.||+|||||+|+|+.....- .....|+|.......+ +
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~------------------------------~~~~pg~T~~~~~~~~---~ 161 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACN------------------------------VGATPGVTKSMQEVHL---D 161 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccce------------------------------ecCCCCeEcceEEEEe---C
Confidence 345799999999999999999995432210 1223788886654443 2
Q ss_pred eEEEEEeCCCC
Q 010318 160 TRFTILDAPGH 170 (513)
Q Consensus 160 ~~i~liDtPGh 170 (513)
..+.++||||.
T Consensus 162 ~~~~l~DtPGi 172 (172)
T cd04178 162 KKVKLLDSPGI 172 (172)
T ss_pred CCEEEEECcCC
Confidence 46899999993
No 357
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.28 E-value=1.2e-05 Score=81.08 Aligned_cols=95 Identities=14% Similarity=0.189 Sum_probs=56.3
Q ss_pred CCeEEEEEeCCCCcch-------HHHHHHhh-----hhcCEEEEEEECCCCcccccccCCcchHHHHHH-HHHcCCCeEE
Q 010318 158 ETTRFTILDAPGHKSY-------VPNMISGA-----SQADIGVLVISARKGEFETGFEKGGQTREHVML-AKTLGVTKLL 224 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f-------~~~~~~~~-----~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~-~~~~~ip~~i 224 (513)
.++.+.||||||...+ ++.+.+.+ ..++..+||+||+.|- .....+.. ....++. -
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~---------~~~~~a~~f~~~~~~~--g 263 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ---------NALSQAKAFHEAVGLT--G 263 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh---------HHHHHHHHHHhhCCCC--E
Confidence 5678999999996543 22222222 2578899999999762 22222222 2334554 4
Q ss_pred EEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 225 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 225 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+++||+|.. ..+ -.+.+. +... ..|+..++ +|++++++.
T Consensus 264 iIlTKlD~t-~~~-----G~~l~~----~~~~------~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 264 IILTKLDGT-AKG-----GVVFAI----ADEL------GIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EEEECCCCC-CCc-----cHHHHH----HHHH------CCCEEEEe--CCCChhhCc
Confidence 689999973 221 122222 2222 35788887 799987753
No 358
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.27 E-value=3.9e-06 Score=75.74 Aligned_cols=82 Identities=23% Similarity=0.257 Sum_probs=54.3
Q ss_pred HhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccC
Q 010318 179 SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 258 (513)
Q Consensus 179 ~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 258 (513)
..++.+|++|+|+|+.++.. .+..+...++...+.| +++++||+|+. + +....... .+....
T Consensus 8 ~i~~~aD~vl~V~D~~~~~~-------~~~~~l~~~~~~~~~p-~iiv~NK~Dl~--~--~~~~~~~~----~~~~~~-- 69 (156)
T cd01859 8 RIIKESDVVLEVLDARDPEL-------TRSRKLERYVLELGKK-LLIVLNKADLV--P--KEVLEKWK----SIKESE-- 69 (156)
T ss_pred HHHhhCCEEEEEeeCCCCcc-------cCCHHHHHHHHhCCCc-EEEEEEhHHhC--C--HHHHHHHH----HHHHhC--
Confidence 33456999999999987643 3455555556667888 89999999983 2 11111111 112222
Q ss_pred cccCCeeEEEeecccccccccccc
Q 010318 259 NVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 259 ~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
..+++++||++|.|+.++.+
T Consensus 70 ----~~~~~~iSa~~~~gi~~L~~ 89 (156)
T cd01859 70 ----GIPVVYVSAKERLGTKILRR 89 (156)
T ss_pred ----CCcEEEEEccccccHHHHHH
Confidence 24799999999999988543
No 359
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.24 E-value=4e-05 Score=66.87 Aligned_cols=146 Identities=21% Similarity=0.201 Sum_probs=87.6
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEE-eeeEEEEeC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVE-VGRAHFETE 158 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~-~~~~~~~~~ 158 (513)
.+..+|+++|.-++|||.++.+|++-....... ---|++ +-...++++
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e-------------------------------~~pTiEDiY~~svet~ 55 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTE-------------------------------LHPTIEDIYVASVETD 55 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCc-------------------------------cccchhhheeEeeecC
Confidence 356789999999999999999997654332111 111221 111223332
Q ss_pred ---CeEEEEEeCCCCcchHHHH-HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--------cCCCeEEEE
Q 010318 159 ---TTRFTILDAPGHKSYVPNM-ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--------LGVTKLLLV 226 (513)
Q Consensus 159 ---~~~i~liDtPGh~~f~~~~-~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~--------~~ip~~ivv 226 (513)
...+.|.||.|...+-... -..++.+|+.+||.|.++.. ....+.+++. -.+| ++|.
T Consensus 56 rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~e----------Sf~rv~llKk~Idk~KdKKEvp-iVVL 124 (198)
T KOG3883|consen 56 RGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPE----------SFQRVELLKKEIDKHKDKKEVP-IVVL 124 (198)
T ss_pred CChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHH----------HHHHHHHHHHHHhhcccccccc-EEEE
Confidence 2468999999998883333 44567899999999988752 2223333332 2478 8899
Q ss_pred EeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccc
Q 010318 227 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 279 (513)
Q Consensus 227 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~ 279 (513)
.||.|+. +..+.. .+......+ .+.+....++|.....+.+
T Consensus 125 aN~rdr~--~p~~vd----~d~A~~Wa~------rEkvkl~eVta~dR~sL~e 165 (198)
T KOG3883|consen 125 ANKRDRA--EPREVD----MDVAQIWAK------REKVKLWEVTAMDRPSLYE 165 (198)
T ss_pred echhhcc--cchhcC----HHHHHHHHh------hhheeEEEEEeccchhhhh
Confidence 9999993 211100 010111111 1246788888877666655
No 360
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=98.23 E-value=8.6e-06 Score=65.61 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=55.2
Q ss_pred cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----CeeecccCCCCeEEEEeccCCcccceeeeEEcc
Q 010318 322 DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 392 (513)
Q Consensus 322 ~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 392 (513)
..|.++++||.+|+|+.||.|+....+...+|..|... +.++++|.|||++++ .++ .+++.||+||+
T Consensus 14 ~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v--~gl--~~~~~Gdtl~~ 84 (85)
T cd03689 14 HRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGL--VNP--GNFQIGDTLTE 84 (85)
T ss_pred CCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEE--ECC--CCccccCEeeC
Confidence 46999999999999999999988776666778787654 568999999999995 544 34789999974
No 361
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.23 E-value=2e-05 Score=77.80 Aligned_cols=94 Identities=18% Similarity=0.249 Sum_probs=55.7
Q ss_pred CCeEEEEEeCCCCcchHHHHH-------Hhhh-----hcCEEEEEEECCCCcccccccCCcchHHHH-HHHHHcCCCeEE
Q 010318 158 ETTRFTILDAPGHKSYVPNMI-------SGAS-----QADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLGVTKLL 224 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~-------~~~~-----~~D~~ilVVda~~g~~e~~~~~~~qt~e~l-~~~~~~~ip~~i 224 (513)
.++.+.||||||....-...+ +.+. .+|..+||+|++.| ......+ ...+..++. -
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~---------~~~~~~~~~f~~~~~~~--g 221 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG---------QNALEQAKVFNEAVGLT--G 221 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC---------HHHHHHHHHHHhhCCCC--E
Confidence 568899999999765433322 2211 38999999999866 2333333 233345655 3
Q ss_pred EEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 225 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 225 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
+++||+|... .+ -.+.+. ....+ .|+..++ +|++++++
T Consensus 222 ~IlTKlDe~~-~~-----G~~l~~----~~~~~------~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 222 IILTKLDGTA-KG-----GIILSI----AYELK------LPIKFIG--VGEKIDDL 259 (272)
T ss_pred EEEEccCCCC-Cc-----cHHHHH----HHHHC------cCEEEEe--CCCChHhC
Confidence 6899999832 11 122221 12222 4677776 78888665
No 362
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.21 E-value=3.6e-06 Score=77.90 Aligned_cols=158 Identities=19% Similarity=0.262 Sum_probs=91.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEE-EeCC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF-ETET 159 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~-~~~~ 159 (513)
..+.+++||.-.+|||.|+-. +.++...... ...+.|. .... ..+ ....
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~--~t~~~fp~~y-----------------vPTVFdn------ys~~-----v~V~dg~~ 52 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLIS--YTTNAFPEEY-----------------VPTVFDN------YSAN-----VTVDDGKP 52 (198)
T ss_pred eeeEEEEECCCCcCceEEEEE--eccCcCcccc-----------------cCeEEcc------ceEE-----EEecCCCE
Confidence 457899999999999999843 3444322110 0011111 0011 112 1223
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCCCc
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~~~ 237 (513)
..+.++||+|+++|-+.+......+|++|++.+...... |+ .-....+-.++.. ++| +|+|-+|.|+. +
T Consensus 53 v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S---~~--nv~~kW~pEi~~~cp~vp-iiLVGtk~DLr--~- 123 (198)
T KOG0393|consen 53 VELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPES---FE--NVKSKWIPEIKHHCPNVP-IILVGTKADLR--D- 123 (198)
T ss_pred EEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhh---HH--HHHhhhhHHHHhhCCCCC-EEEEeehHHhh--h-
Confidence 468999999999997655446679999999888665421 11 1111112222222 688 99999999993 1
Q ss_pred hHHHHHHHH---------hhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 238 SKERYDEIE---------SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 238 ~~~~~~~i~---------~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+....+.+. ++-..+.+++|. +.++.+||++..|+.+.++
T Consensus 124 d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga-----~~y~EcSa~tq~~v~~vF~ 172 (198)
T KOG0393|consen 124 DPSTLEKLQRQGLEPVTYEQGLELAKEIGA-----VKYLECSALTQKGVKEVFD 172 (198)
T ss_pred CHHHHHHHHhccCCcccHHHHHHHHHHhCc-----ceeeeehhhhhCCcHHHHH
Confidence 111111111 222233344442 5799999999999888643
No 363
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.20 E-value=2.2e-05 Score=78.47 Aligned_cols=145 Identities=17% Similarity=0.272 Sum_probs=90.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCch-hhhhcCcEEEeeeEEEEeC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNE-EERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~-~e~~~giTi~~~~~~~~~~ 158 (513)
.-..+|.++|..|.||||++|.|+...- .++. ..+... ....+++.+......+.-+
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l-~~~~---------------------~~~~~~~~~~~~~~~i~~~~~~l~e~ 78 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSL-VDET---------------------EIDDIRAEGTSPTLEIKITKAELEED 78 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhc-cCCC---------------------CccCcccccCCcceEEEeeeeeeecC
Confidence 4568999999999999999999976511 1110 000011 1123555555555555555
Q ss_pred C--eEEEEEeCCCCcch-------------HHHHHHh--------h-------hhcCEEEEEEECC-CCcccccccCCcc
Q 010318 159 T--TRFTILDAPGHKSY-------------VPNMISG--------A-------SQADIGVLVISAR-KGEFETGFEKGGQ 207 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f-------------~~~~~~~--------~-------~~~D~~ilVVda~-~g~~e~~~~~~~q 207 (513)
+ .++++|||||.-++ +...... - ...+++|+.+-.+ +| +.+.
T Consensus 79 ~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-------l~~~ 151 (373)
T COG5019 79 GFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-------LKPL 151 (373)
T ss_pred CeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-------CCHH
Confidence 5 46899999996554 2211111 1 1468999999865 34 2245
Q ss_pred hHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCc
Q 010318 208 TREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 259 (513)
Q Consensus 208 t~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~ 259 (513)
..+.++.+.. .+. +|-||-|.|.. ..+.+...++.+...+...++.
T Consensus 152 DIe~Mk~ls~-~vN-lIPVI~KaD~l----T~~El~~~K~~I~~~i~~~nI~ 197 (373)
T COG5019 152 DIEAMKRLSK-RVN-LIPVIAKADTL----TDDELAEFKERIREDLEQYNIP 197 (373)
T ss_pred HHHHHHHHhc-ccC-eeeeeeccccC----CHHHHHHHHHHHHHHHHHhCCc
Confidence 5554443332 345 88999999983 4567888888888888877543
No 364
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.20 E-value=8.7e-06 Score=72.27 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=55.9
Q ss_pred HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhh
Q 010318 175 PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPF 252 (513)
Q Consensus 175 ~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~ 252 (513)
+...+.+..+|++++|+|+..+.. .+..+...++... +.| +++++||+|+ .+ +.... .+...
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~-------~~~~~l~~~l~~~~~~k~-~iivlNK~DL--~~--~~~~~----~~~~~ 66 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLL-------FRPPDLERYVKEVDPRKK-NILLLNKADL--LT--EEQRK----AWAEY 66 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcc-------cCCHHHHHHHHhccCCCc-EEEEEechhc--CC--HHHHH----HHHHH
Confidence 455677889999999999998743 3555666666665 778 8899999998 32 22222 22333
Q ss_pred hhhccCcccCCeeEEEeecccccc
Q 010318 253 LKASGYNVKKDVQFLPISGLMGLN 276 (513)
Q Consensus 253 l~~~g~~~~~~~~iipiSa~~g~g 276 (513)
+...+ .+++++||++|.+
T Consensus 67 ~~~~~------~~ii~iSa~~~~~ 84 (141)
T cd01857 67 FKKEG------IVVVFFSALKENA 84 (141)
T ss_pred HHhcC------CeEEEEEecCCCc
Confidence 44433 3689999999987
No 365
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.20 E-value=1.1e-05 Score=83.93 Aligned_cols=64 Identities=20% Similarity=0.332 Sum_probs=40.9
Q ss_pred CCeEEEEEeCCCCcchHHHHHHh------hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeec
Q 010318 158 ETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 230 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~------~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~ 230 (513)
.++.+.||||||....-..++.. ...+|-++||+||+.|- .....+.... ..++. -+++||+
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq---------~a~~~a~~F~~~~~~~--g~IlTKl 249 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ---------AAEAQAKAFKDSVDVG--SVIITKL 249 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh---------hHHHHHHHHHhccCCc--EEEEECc
Confidence 36789999999965442222222 23589999999998771 2233333332 24554 4689999
Q ss_pred cC
Q 010318 231 DD 232 (513)
Q Consensus 231 D~ 232 (513)
|.
T Consensus 250 D~ 251 (429)
T TIGR01425 250 DG 251 (429)
T ss_pred cC
Confidence 97
No 366
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.16 E-value=6.9e-06 Score=75.47 Aligned_cols=91 Identities=16% Similarity=0.198 Sum_probs=58.8
Q ss_pred CCC-cchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHH
Q 010318 168 PGH-KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIE 246 (513)
Q Consensus 168 PGh-~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~ 246 (513)
||| .+.+.++...+..+|++++|+|+..+.. ....+.+..+ .+.| .++++||+|+. + +.....
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~-------~~~~~i~~~~--~~k~-~ilVlNK~Dl~--~--~~~~~~-- 66 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLS-------SRNPLLEKIL--GNKP-RIIVLNKADLA--D--PKKTKK-- 66 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccC-------cCChhhHhHh--cCCC-EEEEEehhhcC--C--hHHHHH--
Confidence 777 4557777778899999999999987632 2233332222 3567 78999999993 2 111111
Q ss_pred hhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 247 SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 247 ~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
...+++..+ .+++++||++|.|+.++.+
T Consensus 67 --~~~~~~~~~------~~vi~iSa~~~~gi~~L~~ 94 (171)
T cd01856 67 --WLKYFESKG------EKVLFVNAKSGKGVKKLLK 94 (171)
T ss_pred --HHHHHHhcC------CeEEEEECCCcccHHHHHH
Confidence 112222221 3689999999999998644
No 367
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.15 E-value=7e-06 Score=74.25 Aligned_cols=84 Identities=17% Similarity=0.051 Sum_probs=54.6
Q ss_pred HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhh
Q 010318 178 ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKA 255 (513)
Q Consensus 178 ~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~ 255 (513)
.+++..+|++++|+|+..+.. .+.......+... +.| +|+|+||+|+ .+ ++........ +.+
T Consensus 3 ~~~l~~aD~il~VvD~~~p~~-------~~~~~i~~~l~~~~~~~p-~ilVlNKiDl--~~--~~~~~~~~~~----~~~ 66 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMG-------TRCKHVEEYLKKEKPHKH-LIFVLNKCDL--VP--TWVTARWVKI----LSK 66 (157)
T ss_pred hHhhhhCCEEEEEEECCCCcc-------ccCHHHHHHHHhccCCCC-EEEEEEchhc--CC--HHHHHHHHHH----Hhc
Confidence 466789999999999998632 3455555555543 377 8899999999 32 2222222222 211
Q ss_pred ccCcccCCeeEEEeecccccccccccc
Q 010318 256 SGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 256 ~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. + ...++++||++|.|+.++.+
T Consensus 67 ~-~----~~~~~~iSa~~~~~~~~L~~ 88 (157)
T cd01858 67 E-Y----PTIAFHASINNPFGKGSLIQ 88 (157)
T ss_pred C-C----cEEEEEeeccccccHHHHHH
Confidence 1 1 12368999999999988544
No 368
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.15 E-value=2.7e-06 Score=76.80 Aligned_cols=58 Identities=24% Similarity=0.351 Sum_probs=41.0
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
....+++++|++|+|||||+|+|+.....- ....+|.|.......+ +
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~---~ 144 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLK------------------------------VGNVPGTTTSQQEVKL---D 144 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccc------------------------------ccCCCCcccceEEEEe---c
Confidence 356889999999999999999996443211 1122567766654443 2
Q ss_pred eEEEEEeCCCC
Q 010318 160 TRFTILDAPGH 170 (513)
Q Consensus 160 ~~i~liDtPGh 170 (513)
..+.++||||.
T Consensus 145 ~~~~liDtPG~ 155 (155)
T cd01849 145 NKIKLLDTPGI 155 (155)
T ss_pred CCEEEEECCCC
Confidence 56999999994
No 369
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.14 E-value=2.7e-06 Score=80.43 Aligned_cols=85 Identities=22% Similarity=0.237 Sum_probs=57.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeE
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 161 (513)
.-+|+++|-|.+|||||+..|......+. ++ -+.|.........+++.+
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~s~va---------------------sy----------efttl~~vpG~~~y~gaK 107 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTFSEVA---------------------AY----------EFTTLTTVPGVIRYKGAK 107 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCCCccc---------------------cc----------cceeEEEecceEeccccc
Confidence 35899999999999999988732211111 00 222332233334567889
Q ss_pred EEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCc
Q 010318 162 FTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGE 197 (513)
Q Consensus 162 i~liDtPGh~~-------f~~~~~~~~~~~D~~ilVVda~~g~ 197 (513)
+.+.|.||.-. .-+..+..++.|+.+++|+|+..+.
T Consensus 108 iqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~ 150 (358)
T KOG1487|consen 108 IQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPL 150 (358)
T ss_pred eeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcc
Confidence 99999999532 2455566678999999999998764
No 370
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.11 E-value=6.5e-05 Score=70.52 Aligned_cols=143 Identities=22% Similarity=0.292 Sum_probs=82.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEe--eeEEEEeC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV--GRAHFETE 158 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~--~~~~~~~~ 158 (513)
-..||.++|..+.|||||+|.|....- .+ ++ . .+ ...+..+ .|.++ ....++-+
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v-~~-------------~s-~-------~~-~~~~p~p-kT~eik~~thvieE~ 100 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHV-SD-------------SS-S-------SD-NSAEPIP-KTTEIKSITHVIEEK 100 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHH-hh-------------cc-C-------CC-cccCccc-ceEEEEeeeeeeeec
Confidence 358999999999999999999842211 00 00 0 00 0111111 22222 22334444
Q ss_pred C--eEEEEEeCCCCc---------------------chHHHHHHhhh-------hcCEEEEEEECCCCcccccccCCcch
Q 010318 159 T--TRFTILDAPGHK---------------------SYVPNMISGAS-------QADIGVLVISARKGEFETGFEKGGQT 208 (513)
Q Consensus 159 ~--~~i~liDtPGh~---------------------~f~~~~~~~~~-------~~D~~ilVVda~~g~~e~~~~~~~qt 208 (513)
+ -++++|||||.- .|++.-+...+ ..+++++.|.++... +.+-+
T Consensus 101 gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs------LrplD 174 (336)
T KOG1547|consen 101 GVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS------LRPLD 174 (336)
T ss_pred ceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc------cCccc
Confidence 4 368999999943 34443333322 456788888877442 44667
Q ss_pred HHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCc
Q 010318 209 REHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 259 (513)
Q Consensus 209 ~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~ 259 (513)
.+.++.+.. +-++|-||-|.|.... +.....++.+++-|...+++
T Consensus 175 ieflkrLt~--vvNvvPVIakaDtlTl----eEr~~FkqrI~~el~~~~i~ 219 (336)
T KOG1547|consen 175 IEFLKRLTE--VVNVVPVIAKADTLTL----EERSAFKQRIRKELEKHGID 219 (336)
T ss_pred HHHHHHHhh--hheeeeeEeecccccH----HHHHHHHHHHHHHHHhcCcc
Confidence 776654443 2347789999998543 34445666677777766653
No 371
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.10 E-value=9.4e-06 Score=75.85 Aligned_cols=96 Identities=14% Similarity=0.004 Sum_probs=56.2
Q ss_pred chHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHh
Q 010318 172 SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTP 251 (513)
Q Consensus 172 ~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~ 251 (513)
.|...+...+..+|++|+|+|+.+... .....+ .....+.| +++|+||+|+....-.....+..... .
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~--------~~~~~l-~~~~~~~~-~ilV~NK~Dl~~~~~~~~~~~~~~~~--~ 90 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPG--------SLIPRL-RLFGGNNP-VILVGNKIDLLPKDKNLVRIKNWLRA--K 90 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCC--------ccchhH-HHhcCCCc-EEEEEEchhcCCCCCCHHHHHHHHHH--H
Confidence 356666667789999999999987531 122222 22334677 88999999984321111111111100 0
Q ss_pred hhhhccCcccCCeeEEEeecccccccccccc
Q 010318 252 FLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 252 ~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
..+..++. ..+++++||++|.|+.++.+
T Consensus 91 ~~~~~~~~---~~~i~~vSA~~~~gi~eL~~ 118 (190)
T cd01855 91 AAAGLGLK---PKDVILISAKKGWGVEELIN 118 (190)
T ss_pred HHhhcCCC---cccEEEEECCCCCCHHHHHH
Confidence 11222221 12689999999999998643
No 372
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.00 E-value=1.8e-05 Score=78.53 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=58.5
Q ss_pred CCCc-chHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHH
Q 010318 168 PGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIE 246 (513)
Q Consensus 168 PGh~-~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~ 246 (513)
|||- +-.+.+...+..+|++|+|+||..+.. ........++ .+.| +|+|+||+|+ .+ +.......
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~-------~~~~~i~~~l--~~kp-~IiVlNK~DL--~~--~~~~~~~~ 70 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLS-------SRNPMIDEIR--GNKP-RLIVLNKADL--AD--PAVTKQWL 70 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------CCChhHHHHH--CCCC-EEEEEEcccc--CC--HHHHHHHH
Confidence 7875 346666777889999999999987632 2222333333 2567 8899999999 32 11112211
Q ss_pred hhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 247 SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 247 ~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
..++..+ .+++++||.++.|+.++.+
T Consensus 71 ----~~~~~~~------~~vi~iSa~~~~gi~~L~~ 96 (276)
T TIGR03596 71 ----KYFEEKG------IKALAINAKKGKGVKKIIK 96 (276)
T ss_pred ----HHHHHcC------CeEEEEECCCcccHHHHHH
Confidence 2222222 3689999999999988643
No 373
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.00 E-value=4.3e-05 Score=71.74 Aligned_cols=66 Identities=20% Similarity=0.380 Sum_probs=42.9
Q ss_pred CCeEEEEEeCCCCcchHHHHHHh------hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~------~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
+++.+.||||||...+-...+.. ...++-++||+||+.+. .............++.. +++||+|
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--------~~~~~~~~~~~~~~~~~--lIlTKlD 151 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--------EDLEQALAFYEAFGIDG--LILTKLD 151 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--------HHHHHHHHHHHHSSTCE--EEEESTT
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--------HHHHHHHHHhhcccCce--EEEEeec
Confidence 45779999999976653322221 23688999999999762 12334444555667874 3699999
Q ss_pred CC
Q 010318 232 DH 233 (513)
Q Consensus 232 ~~ 233 (513)
..
T Consensus 152 et 153 (196)
T PF00448_consen 152 ET 153 (196)
T ss_dssp SS
T ss_pred CC
Confidence 83
No 374
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.97 E-value=7.8e-06 Score=76.39 Aligned_cols=64 Identities=22% Similarity=0.245 Sum_probs=41.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeE
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 161 (513)
..+++++|.+|+|||||+|+|+.....-.. ..+ .......+|.|.+.....+. ..
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~-----------~~~-----------~~~~~~~~gtT~~~~~~~~~---~~ 181 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKK-----------LKD-----------LLTTSPIPGTTLDLIKIPLG---NG 181 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccc-----------ccc-----------ccccCCCCCeeeeeEEEecC---CC
Confidence 468999999999999999999654321000 000 00012236788877655553 25
Q ss_pred EEEEeCCCC
Q 010318 162 FTILDAPGH 170 (513)
Q Consensus 162 i~liDtPGh 170 (513)
+.|+||||.
T Consensus 182 ~~~~DtPG~ 190 (190)
T cd01855 182 KKLYDTPGI 190 (190)
T ss_pred CEEEeCcCC
Confidence 899999994
No 375
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=4.3e-05 Score=78.04 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=43.6
Q ss_pred CeEEEEEeCCCCcch----HHHHHHhh--hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 159 TTRFTILDAPGHKSY----VPNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 159 ~~~i~liDtPGh~~f----~~~~~~~~--~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
++.+.||||||.... +..+...+ ..+|-++||+||+.+. ....+.+......++.. +++||+|.
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--------~d~~~i~~~F~~~~idg--lI~TKLDE 389 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHIDG--IVFTKFDE 389 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--------HHHHHHHHHhcCCCCCE--EEEEcccC
Confidence 468999999997543 33333322 3578899999997541 23355555666677774 47999998
Q ss_pred C
Q 010318 233 H 233 (513)
Q Consensus 233 ~ 233 (513)
.
T Consensus 390 T 390 (436)
T PRK11889 390 T 390 (436)
T ss_pred C
Confidence 3
No 376
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.96 E-value=1.2e-05 Score=78.31 Aligned_cols=85 Identities=21% Similarity=0.221 Sum_probs=55.8
Q ss_pred HhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccC
Q 010318 179 SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 258 (513)
Q Consensus 179 ~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 258 (513)
..++.+|.+++|+|+.+..+ .+ ....+.+..+...++| +++|+||+|+. +-.+ ...+....++..|
T Consensus 32 ~~~~n~D~viiV~d~~~p~~--s~---~~l~r~l~~~~~~~i~-~vIV~NK~DL~--~~~~-----~~~~~~~~~~~~g- 97 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPEL--SL---NQLDRFLVVAEAQNIE-PIIVLNKIDLL--DDED-----MEKEQLDIYRNIG- 97 (245)
T ss_pred cccccCCEEEEEEECCCCCC--CH---HHHHHHHHHHHHCCCC-EEEEEECcccC--CCHH-----HHHHHHHHHHHCC-
Confidence 35789999999999987532 11 1344445556667888 88999999993 2111 1111222333343
Q ss_pred cccCCeeEEEeecccccccccccc
Q 010318 259 NVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 259 ~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.+++.+||++|.|+.++++
T Consensus 98 -----~~v~~~SAktg~gi~eLf~ 116 (245)
T TIGR00157 98 -----YQVLMTSSKNQDGLKELIE 116 (245)
T ss_pred -----CeEEEEecCCchhHHHHHh
Confidence 4799999999999988643
No 377
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.94 E-value=7.9e-05 Score=68.44 Aligned_cols=65 Identities=23% Similarity=0.390 Sum_probs=41.1
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhh------hhcCEEEEEEECCCCcccccccCCcchHHH-HHHHHHcCCCeEEEEEeec
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGA------SQADIGVLVISARKGEFETGFEKGGQTREH-VMLAKTLGVTKLLLVVNKM 230 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~------~~~D~~ilVVda~~g~~e~~~~~~~qt~e~-l~~~~~~~ip~~ivviNK~ 230 (513)
.++.+.|+||||...+-...+..+ ..+|.+++|+|+..+. ...+. ..+.+..++. -+++||+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---------~~~~~~~~~~~~~~~~--~viltk~ 149 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---------DAVNQAKAFNEALGIT--GVILTKL 149 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---------HHHHHHHHHHhhCCCC--EEEEECC
Confidence 467789999999864422222221 2499999999997541 23333 3334455654 4678999
Q ss_pred cCC
Q 010318 231 DDH 233 (513)
Q Consensus 231 D~~ 233 (513)
|..
T Consensus 150 D~~ 152 (173)
T cd03115 150 DGD 152 (173)
T ss_pred cCC
Confidence 983
No 378
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.93 E-value=1.5e-05 Score=79.64 Aligned_cols=58 Identities=22% Similarity=0.234 Sum_probs=40.6
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+..+++++|.+|+|||||+|+|+.....- .....|+|........ +
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~------------------------------~~~~~g~T~~~~~~~~---~ 165 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAK------------------------------TGNRPGVTKAQQWIKL---G 165 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccc------------------------------cCCCCCeEEEEEEEEe---C
Confidence 356789999999999999999995432110 1112678877643332 3
Q ss_pred eEEEEEeCCCC
Q 010318 160 TRFTILDAPGH 170 (513)
Q Consensus 160 ~~i~liDtPGh 170 (513)
..+.|+||||.
T Consensus 166 ~~~~l~DtPGi 176 (287)
T PRK09563 166 KGLELLDTPGI 176 (287)
T ss_pred CcEEEEECCCc
Confidence 46899999995
No 379
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=97.92 E-value=9.1e-05 Score=60.75 Aligned_cols=66 Identities=23% Similarity=0.426 Sum_probs=51.1
Q ss_pred cCCeEEEEEEEeeeecCCCEEEEec---------CCcEEEEEEEEEC----CeeecccCCCCeEEEEeccCCcccceeee
Q 010318 322 DMGTVVMGKVESGSVREGDSLLVMP---------NKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 388 (513)
Q Consensus 322 ~~G~vv~g~v~sG~l~~gd~v~~~p---------~~~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 388 (513)
..|.+.++||.+|+|+.||.|.+.. .....+|..|+.. ..++++|.|||+|++ .|++ +++.|+
T Consensus 14 ~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i--~g~~--~~~~g~ 89 (93)
T cd03700 14 KGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLI--VGLD--QLKSGT 89 (93)
T ss_pred CCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEE--ECCc--cCceEe
Confidence 5688999999999999999998765 2234677788654 468999999999996 4443 367787
Q ss_pred EEc
Q 010318 389 VLS 391 (513)
Q Consensus 389 vl~ 391 (513)
+.+
T Consensus 90 ~~~ 92 (93)
T cd03700 90 TAT 92 (93)
T ss_pred Eec
Confidence 754
No 380
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.91 E-value=1.1e-05 Score=71.55 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q 010318 84 NVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
+++++|.+|+|||||+|+|+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~ 105 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVG 105 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 899999999999999999953
No 381
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.91 E-value=2.7e-05 Score=70.25 Aligned_cols=77 Identities=27% Similarity=0.239 Sum_probs=49.0
Q ss_pred CEEEEEEECCCCcccccccCCcchHHHH-HHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCC
Q 010318 185 DIGVLVISARKGEFETGFEKGGQTREHV-MLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKD 263 (513)
Q Consensus 185 D~~ilVVda~~g~~e~~~~~~~qt~e~l-~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~ 263 (513)
|++|+|+|+.++.. ....... ..+...+.| +|+++||+|+ .+ ++....... . +.... .
T Consensus 1 Dvvl~VvD~~~p~~-------~~~~~i~~~~~~~~~~p-~IiVlNK~Dl--~~--~~~~~~~~~---~-~~~~~-----~ 59 (155)
T cd01849 1 DVILEVLDARDPLG-------TRSPDIERVLIKEKGKK-LILVLNKADL--VP--KEVLRKWLA---Y-LRHSY-----P 59 (155)
T ss_pred CEEEEEEeccCCcc-------ccCHHHHHHHHhcCCCC-EEEEEechhc--CC--HHHHHHHHH---H-HHhhC-----C
Confidence 78999999987632 2333333 355667888 8999999999 32 222211111 1 22211 2
Q ss_pred eeEEEeecccccccccccc
Q 010318 264 VQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 264 ~~iipiSa~~g~gi~~l~~ 282 (513)
.+++++||++|.|+.++.+
T Consensus 60 ~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 60 TIPFKISATNGQGIEKKES 78 (155)
T ss_pred ceEEEEeccCCcChhhHHH
Confidence 3689999999999988644
No 382
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.91 E-value=1.1e-05 Score=81.61 Aligned_cols=58 Identities=26% Similarity=0.324 Sum_probs=42.3
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
++..++.++|-||+|||||+|+|+......+ .+.+|+|...-.....
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~------------------------------s~~PG~Tk~~q~i~~~--- 176 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKT------------------------------SNRPGTTKGIQWIKLD--- 176 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceee------------------------------CCCCceecceEEEEcC---
Confidence 3457899999999999999999965544221 2226888766555443
Q ss_pred eEEEEEeCCCC
Q 010318 160 TRFTILDAPGH 170 (513)
Q Consensus 160 ~~i~liDtPGh 170 (513)
..+.|+||||.
T Consensus 177 ~~i~LlDtPGi 187 (322)
T COG1161 177 DGIYLLDTPGI 187 (322)
T ss_pred CCeEEecCCCc
Confidence 34999999993
No 383
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.90 E-value=6.4e-06 Score=74.23 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
..++++|+.|+|||||+|+|+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 78999999999999999999654
No 384
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.89 E-value=1.6e-05 Score=78.85 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=39.6
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+..+++++|.+|+|||||+|+|+.....- .....|.|.......+ +
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~------------------------------~~~~~g~T~~~~~~~~---~ 162 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAK------------------------------VGNRPGVTKGQQWIKL---S 162 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc------------------------------cCCCCCeecceEEEEe---C
Confidence 346889999999999999999995322110 1112666766543333 2
Q ss_pred eEEEEEeCCCC
Q 010318 160 TRFTILDAPGH 170 (513)
Q Consensus 160 ~~i~liDtPGh 170 (513)
..+.|+||||.
T Consensus 163 ~~~~l~DtPG~ 173 (276)
T TIGR03596 163 DGLELLDTPGI 173 (276)
T ss_pred CCEEEEECCCc
Confidence 46899999996
No 385
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.88 E-value=0.00014 Score=71.11 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=48.9
Q ss_pred HHHcCCCeEEEEEeeccCC-----CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccc
Q 010318 215 AKTLGVTKLLLVVNKMDDH-----TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 279 (513)
Q Consensus 215 ~~~~~ip~~ivviNK~D~~-----~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~ 279 (513)
...+|+| ++||++|+|.. ..+|..+.|+.|...+++|+-++|- ..|.+|++...|++-
T Consensus 218 t~NlGi~-vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga------aLiyTSvKE~KNidl 280 (473)
T KOG3905|consen 218 THNLGIP-VLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA------ALIYTSVKETKNIDL 280 (473)
T ss_pred hhcCCCc-EEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc------eeEEeecccccchHH
Confidence 4456788 89999999972 4568889999999999999998874 589999999999975
No 386
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=5.6e-05 Score=68.44 Aligned_cols=148 Identities=20% Similarity=0.269 Sum_probs=96.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEE--EEe
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH--FET 157 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~--~~~ 157 (513)
.....++++|..+.||||++.+.+ +|.... ....|+.+.... |.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~l--tgeFe~-------------------------------~y~at~Gv~~~pl~f~t 54 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHL--TGEFEK-------------------------------TYPATLGVEVHPLLFDT 54 (216)
T ss_pred cceEEEEEecCCcccccchhhhhh--ccccee-------------------------------cccCcceeEEeeeeeec
Confidence 467889999999999999998773 332211 112222222222 222
Q ss_pred -C-CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-CCCeEEEEEeeccCCC
Q 010318 158 -E-TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDDHT 234 (513)
Q Consensus 158 -~-~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~-~ip~~ivviNK~D~~~ 234 (513)
. ..+|..+||.|.+.|....-.+.-+.-.||+..|...-.. ...-.+.|-.+++.. ++| +|++-||.|...
T Consensus 55 n~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t-----~~n~~rwhrd~~rv~~NiP-iv~cGNKvDi~~ 128 (216)
T KOG0096|consen 55 NRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFT-----YKNVPRWHRDLVRVRENIP-IVLCGNKVDIKA 128 (216)
T ss_pred ccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhh-----hhcchHHHHHHHHHhcCCC-eeeeccceeccc
Confidence 2 3789999999999998776666556778898888776543 233445566666654 579 999999999721
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
. ++.. +.+.+..+.+...+.+||++..|....
T Consensus 129 r--------~~k~------k~v~~~rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 129 R--------KVKA------KPVSFHRKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred c--------cccc------ccceeeecccceeEEeecccccccccc
Confidence 1 1111 111222234678999999999998875
No 387
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.88 E-value=1.9e-05 Score=72.46 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=39.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
..++++++|.+|+|||||+|+|+...... .....|.|.......+. .
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~------------------------------~~~~~~~T~~~~~~~~~---~ 160 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAK------------------------------VGNKPGVTKGIQWIKIS---P 160 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCEEeeeEEEEec---C
Confidence 44789999999999999999995322110 11124666665554443 5
Q ss_pred EEEEEeCCCC
Q 010318 161 RFTILDAPGH 170 (513)
Q Consensus 161 ~i~liDtPGh 170 (513)
.+.++||||.
T Consensus 161 ~~~~iDtpG~ 170 (171)
T cd01856 161 GIYLLDTPGI 170 (171)
T ss_pred CEEEEECCCC
Confidence 6899999995
No 388
>PRK12289 GTPase RsgA; Reviewed
Probab=97.87 E-value=3.8e-05 Score=78.50 Aligned_cols=82 Identities=24% Similarity=0.303 Sum_probs=55.6
Q ss_pred hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcc
Q 010318 181 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 260 (513)
Q Consensus 181 ~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~ 260 (513)
++.+|.+++|+|+.+..+. ..+..+.+..+...++| +|+|+||+|+ ++ ....+ .+...+...|+
T Consensus 87 ~aNvD~vLlV~d~~~p~~~-----~~~LdR~L~~a~~~~ip-~ILVlNK~DL--v~--~~~~~----~~~~~~~~~g~-- 150 (352)
T PRK12289 87 VANADQILLVFALAEPPLD-----PWQLSRFLVKAESTGLE-IVLCLNKADL--VS--PTEQQ----QWQDRLQQWGY-- 150 (352)
T ss_pred hhcCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEEchhc--CC--hHHHH----HHHHHHHhcCC--
Confidence 6789999999999865421 01334555556667898 8999999999 42 12222 22233444443
Q ss_pred cCCeeEEEeecccccccccccc
Q 010318 261 KKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 261 ~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+++++||++|.|+.+|.+
T Consensus 151 ----~v~~iSA~tg~GI~eL~~ 168 (352)
T PRK12289 151 ----QPLFISVETGIGLEALLE 168 (352)
T ss_pred ----eEEEEEcCCCCCHHHHhh
Confidence 689999999999988644
No 389
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.86 E-value=8.5e-05 Score=66.53 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=38.6
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
.++.+.||||||..... ...+..||.+|+|+....+ .....++. ..+.... +++|||+|
T Consensus 90 ~~~D~iiIDtaG~~~~~---~~~~~~Ad~~ivv~tpe~~----------D~y~~~k~-~~~~~~~-~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVGQSE---VDIASMADTTVVVMAPGAG----------DDIQAIKA-GIMEIAD-IVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccChhh---hhHHHhCCEEEEEECCCch----------hHHHHhhh-hHhhhcC-EEEEeCCC
Confidence 46789999999965333 4467889999999887633 22222222 2233332 57999998
No 390
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.00012 Score=72.75 Aligned_cols=132 Identities=21% Similarity=0.193 Sum_probs=83.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCc--cchhhhhhccCchhhhhcCcEEEeee-EEEEe-
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR--ESWYMAYIMDTNEEERIKGKTVEVGR-AHFET- 157 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~--~s~~~~~~~d~~~~e~~~giTi~~~~-~~~~~- 157 (513)
.+-|.++|.-..||||+++.|+...-. ....|. +.-.+..+|-...++.-.|.+.-+.. ..|..
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dyp------------g~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL 125 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYP------------GLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGL 125 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCC------------ccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhh
Confidence 367889999999999999999643210 001221 12223334555555556666654431 11110
Q ss_pred ----------------C---CeEEEEEeCCCCcch-----------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcc
Q 010318 158 ----------------E---TTRFTILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQ 207 (513)
Q Consensus 158 ----------------~---~~~i~liDtPGh~~f-----------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~q 207 (513)
. -..++||||||.-.- ..-..=-+..||.++|+.|+..-. ....
T Consensus 126 ~~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLD------IsdE 199 (532)
T KOG1954|consen 126 NKFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLD------ISDE 199 (532)
T ss_pred hhhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhcc------ccHH
Confidence 1 134899999995433 322222356899999999998732 3467
Q ss_pred hHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 208 TREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 208 t~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
+++.+..++...-+ +=||+||.|.
T Consensus 200 f~~vi~aLkG~Edk-iRVVLNKADq 223 (532)
T KOG1954|consen 200 FKRVIDALKGHEDK-IRVVLNKADQ 223 (532)
T ss_pred HHHHHHHhhCCcce-eEEEeccccc
Confidence 88888888877655 6789999999
No 391
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.84 E-value=9.9e-05 Score=75.68 Aligned_cols=67 Identities=15% Similarity=0.227 Sum_probs=41.1
Q ss_pred eCCeEEEEEeCCCCc---chHHHHHHhhh---hcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---------CCC
Q 010318 157 TETTRFTILDAPGHK---SYVPNMISGAS---QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---------GVT 221 (513)
Q Consensus 157 ~~~~~i~liDtPGh~---~f~~~~~~~~~---~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---------~ip 221 (513)
+.++.+.||||||.. .+....+..+. .++-.+||++|+.+. ....+.+...... ++.
T Consensus 213 l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--------~~l~evi~~f~~~~~~p~~~~~~~~ 284 (374)
T PRK14722 213 LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--------DTLNEVVQAYRSAAGQPKAALPDLA 284 (374)
T ss_pred hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--------HHHHHHHHHHHHhhcccccccCCCC
Confidence 357789999999976 33444444443 455669999999873 1223333333333 234
Q ss_pred eEEEEEeeccCC
Q 010318 222 KLLLVVNKMDDH 233 (513)
Q Consensus 222 ~~ivviNK~D~~ 233 (513)
. +++||+|..
T Consensus 285 ~--~I~TKlDEt 294 (374)
T PRK14722 285 G--CILTKLDEA 294 (374)
T ss_pred E--EEEeccccC
Confidence 2 468999983
No 392
>PRK12288 GTPase RsgA; Reviewed
Probab=97.84 E-value=1.5e-05 Score=81.38 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.7
Q ss_pred EEEEEecCCCChHHHHhHHHHH
Q 010318 84 NVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
.++++|.+|+|||||+|+|+..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPE 228 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccc
Confidence 4799999999999999999644
No 393
>PRK00098 GTPase RsgA; Reviewed
Probab=97.84 E-value=3.6e-05 Score=77.22 Aligned_cols=82 Identities=24% Similarity=0.374 Sum_probs=54.5
Q ss_pred hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcc
Q 010318 181 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 260 (513)
Q Consensus 181 ~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~ 260 (513)
++.+|.+++|+|+.+..+. .....+.+..+...++| +++|+||+|+. + ...... .....+...+
T Consensus 78 aaniD~vllV~d~~~p~~~-----~~~idr~L~~~~~~~ip-~iIVlNK~DL~--~-~~~~~~----~~~~~~~~~g--- 141 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFS-----TDLLDRFLVLAEANGIK-PIIVLNKIDLL--D-DLEEAR----ELLALYRAIG--- 141 (298)
T ss_pred eecCCEEEEEEECCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEEhHHcC--C-CHHHHH----HHHHHHHHCC---
Confidence 6899999999999765321 11223445556777898 88999999993 2 111221 2222334443
Q ss_pred cCCeeEEEeeccccccccccc
Q 010318 261 KKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 261 ~~~~~iipiSa~~g~gi~~l~ 281 (513)
.+++++||++|.|+.++.
T Consensus 142 ---~~v~~vSA~~g~gi~~L~ 159 (298)
T PRK00098 142 ---YDVLELSAKEGEGLDELK 159 (298)
T ss_pred ---CeEEEEeCCCCccHHHHH
Confidence 479999999999998754
No 394
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.82 E-value=5.1e-05 Score=75.77 Aligned_cols=92 Identities=20% Similarity=0.241 Sum_probs=58.9
Q ss_pred CCCCcch-HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHH
Q 010318 167 APGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEI 245 (513)
Q Consensus 167 tPGh~~f-~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i 245 (513)
=|||-.- .+.+...+..+|++|+|+||..+.. ....+...++. +.| +++++||+|+ .+ ....+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~-------~~~~~l~~~~~--~kp-~iiVlNK~DL--~~--~~~~~~- 71 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLS-------SENPMIDKIIG--NKP-RLLILNKSDL--AD--PEVTKK- 71 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCC-------CCChhHHHHhC--CCC-EEEEEEchhc--CC--HHHHHH-
Confidence 3887543 5556667889999999999987632 23333333332 667 8899999998 32 111112
Q ss_pred HhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 246 ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 246 ~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
...++...+ .+++++||.++.|+..+.+
T Consensus 72 ---~~~~~~~~~------~~vi~vSa~~~~gi~~L~~ 99 (287)
T PRK09563 72 ---WIEYFEEQG------IKALAINAKKGQGVKKILK 99 (287)
T ss_pred ---HHHHHHHcC------CeEEEEECCCcccHHHHHH
Confidence 222222222 3689999999999988644
No 395
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.00022 Score=71.99 Aligned_cols=143 Identities=16% Similarity=0.247 Sum_probs=84.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC-
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 159 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~- 159 (513)
-..++.++|..|.|||||+|.|+.+.- ..+++ ............++......++-++
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l-~~~~~---------------------~~~~~~~~~~t~~i~~~~~~iee~g~ 77 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDL-SGNRE---------------------VPGASERIKETVEIESTKVEIEENGV 77 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhc-cCCcc---------------------cCCcccCccccceeeeeeeeecCCCe
Confidence 358999999999999999999965411 01100 0001111112334444444444444
Q ss_pred -eEEEEEeCCCCcch-------------HHHHHH------------hhh--hcCEEEEEEECC-CCcccccccCCcchHH
Q 010318 160 -TRFTILDAPGHKSY-------------VPNMIS------------GAS--QADIGVLVISAR-KGEFETGFEKGGQTRE 210 (513)
Q Consensus 160 -~~i~liDtPGh~~f-------------~~~~~~------------~~~--~~D~~ilVVda~-~g~~e~~~~~~~qt~e 210 (513)
.+++++||||.-++ +..... ... ..+++|+.|... +| +.+...+
T Consensus 78 ~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-------L~p~Di~ 150 (366)
T KOG2655|consen 78 KLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-------LKPLDIE 150 (366)
T ss_pred EEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-------CcHhhHH
Confidence 46899999996543 111111 011 578899999865 34 2245555
Q ss_pred HHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccC
Q 010318 211 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 258 (513)
Q Consensus 211 ~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 258 (513)
.++.+. ..++ +|-||-|.|.. ........+..+...+...++
T Consensus 151 ~Mk~l~-~~vN-iIPVI~KaD~l----T~~El~~~K~~I~~~i~~~nI 192 (366)
T KOG2655|consen 151 FMKKLS-KKVN-LIPVIAKADTL----TKDELNQFKKRIRQDIEEHNI 192 (366)
T ss_pred HHHHHh-cccc-ccceeeccccC----CHHHHHHHHHHHHHHHHHcCc
Confidence 443322 3466 88899999984 445677777777777776654
No 396
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=5.7e-05 Score=76.03 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=27.9
Q ss_pred eEEEEEeCCCC-------cchHHHHHHhhhhcCEEEEEEECCC
Q 010318 160 TRFTILDAPGH-------KSYVPNMISGASQADIGVLVISARK 195 (513)
Q Consensus 160 ~~i~liDtPGh-------~~f~~~~~~~~~~~D~~ilVVda~~ 195 (513)
..+.|+|.+|. +-.-+..+.-++.+|+++.||||..
T Consensus 67 ~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 67 APVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred eeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 35889999994 2345555666899999999999984
No 397
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.77 E-value=2.6e-05 Score=76.00 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
..++++|++|+|||||+|+|+..
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 47899999999999999999644
No 398
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.76 E-value=7.2e-05 Score=76.30 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=28.5
Q ss_pred eEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCC
Q 010318 160 TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 195 (513)
Q Consensus 160 ~~i~liDtPGh~~-------f~~~~~~~~~~~D~~ilVVda~~ 195 (513)
..+.|+|.||... .-+..+.-++.+|++++||++.+
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 4689999999533 45566677899999999999864
No 399
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.74 E-value=0.00015 Score=59.42 Aligned_cols=74 Identities=27% Similarity=0.374 Sum_probs=57.0
Q ss_pred eEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC-CeeecccCCCCeEEEEeccCCcccceeeeE
Q 010318 313 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFV 389 (513)
Q Consensus 313 ~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~-~~~v~~a~aG~~v~i~l~~~~~~~i~~G~v 389 (513)
+..|.++. ++.|.+++..|.+|+|++||.++.+. ...+||+|... .+++++|.||+.|.| .|++. --..|+.
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~--~~gkVr~l~d~~g~~v~~a~Ps~~V~I--~G~~~-~P~aGd~ 76 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGT--TYGKVRAMFDENGKRVKEAGPSTPVEI--LGLKG-VPQAGDK 76 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcc--cccEEEEEECCCCCCCCEECCCCcEEE--cCCCC-CCCCCCE
Confidence 34566665 67899999999999999999999954 45699999987 579999999999986 34432 1134655
Q ss_pred Ec
Q 010318 390 LS 391 (513)
Q Consensus 390 l~ 391 (513)
+.
T Consensus 77 ~~ 78 (95)
T cd03702 77 FL 78 (95)
T ss_pred EE
Confidence 54
No 400
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.74 E-value=0.00016 Score=75.94 Aligned_cols=63 Identities=24% Similarity=0.415 Sum_probs=40.2
Q ss_pred CeEEEEEeCCCCcchHHHH------HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeecc
Q 010318 159 TTRFTILDAPGHKSYVPNM------ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMD 231 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~------~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~D 231 (513)
.+.+.||||||...+-..+ +..+..+|.++||+||+.| ....+.+.... ..++. -+++||+|
T Consensus 175 ~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g---------q~av~~a~~F~~~l~i~--gvIlTKlD 243 (437)
T PRK00771 175 KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG---------QQAKNQAKAFHEAVGIG--GIIITKLD 243 (437)
T ss_pred cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc---------HHHHHHHHHHHhcCCCC--EEEEeccc
Confidence 3479999999976553332 2334579999999999876 12333332222 23443 46889999
Q ss_pred C
Q 010318 232 D 232 (513)
Q Consensus 232 ~ 232 (513)
.
T Consensus 244 ~ 244 (437)
T PRK00771 244 G 244 (437)
T ss_pred C
Confidence 7
No 401
>PRK12289 GTPase RsgA; Reviewed
Probab=97.73 E-value=3.1e-05 Score=79.13 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHhHHHHH
Q 010318 84 NVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
.++++|.+|+|||||+|+|+..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD 195 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc
Confidence 4899999999999999999744
No 402
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.66 E-value=0.00017 Score=65.36 Aligned_cols=22 Identities=36% Similarity=0.397 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHhHHHHH
Q 010318 84 NVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
.+.++|..|+|||||+++|+..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 5789999999999999998754
No 403
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.66 E-value=0.00021 Score=75.52 Aligned_cols=56 Identities=23% Similarity=0.390 Sum_probs=46.1
Q ss_pred cCCCeEEEEEeeccCC-----CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 218 LGVTKLLLVVNKMDDH-----TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 218 ~~ip~~ivviNK~D~~-----~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
+|+| ++||++|.|.. ..+|.++.|+-|..-|+.++-++|. .+|.+|.+...|++-|
T Consensus 195 lGip-i~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA------sL~yts~~~~~n~~~L 255 (472)
T PF05783_consen 195 LGIP-IVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA------SLIYTSVKEEKNLDLL 255 (472)
T ss_pred cCcc-eEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC------eEEEeeccccccHHHH
Confidence 4688 99999999963 2358889999999999999988874 5888999998888753
No 404
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=97.66 E-value=0.00045 Score=56.75 Aligned_cols=66 Identities=18% Similarity=0.349 Sum_probs=47.6
Q ss_pred EEEEEEE--ccC-CeEEEEEEEeeeecCCCEEEEecCC---------cEEEEEEEEEC----CeeecccCCCCeEEEEec
Q 010318 314 MPIIDKF--KDM-GTVVMGKVESGSVREGDSLLVMPNK---------AQVKVLAIYCD----DNRVRHAGPGENLRIRLS 377 (513)
Q Consensus 314 ~~i~~~~--~~~-G~vv~g~v~sG~l~~gd~v~~~p~~---------~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~ 377 (513)
+.|..+. +.. |.+..+||.+|+|+.||.|++...+ ...+|..|... ..++++|.|||+|++ .
T Consensus 3 a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v--~ 80 (94)
T cd04090 3 VHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLI--K 80 (94)
T ss_pred EEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEE--E
Confidence 3455544 233 5679999999999999999875321 24677788754 468999999999995 5
Q ss_pred cCCc
Q 010318 378 GIEE 381 (513)
Q Consensus 378 ~~~~ 381 (513)
|++.
T Consensus 81 gl~~ 84 (94)
T cd04090 81 GIDS 84 (94)
T ss_pred Ccch
Confidence 5533
No 405
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.66 E-value=0.00024 Score=72.51 Aligned_cols=131 Identities=20% Similarity=0.213 Sum_probs=75.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchh------HHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEE
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDR------TIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH 154 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~------~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~ 154 (513)
+...|+++|+.|+||||.+-.|-......... ++..|+=.+.++- ..|+.+ -|+.+.+....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQL---k~Ya~i---------m~vp~~vv~~~ 269 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQL---KTYADI---------MGVPLEVVYSP 269 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHH---HHHHHH---------hCCceEEecCH
Confidence 47889999999999999999886554411110 0111111111100 012222 23444332221
Q ss_pred -------EEeCCeEEEEEeCCCCcchHHHHHHhh------hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCC
Q 010318 155 -------FETETTRFTILDAPGHKSYVPNMISGA------SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 221 (513)
Q Consensus 155 -------~~~~~~~i~liDtPGh~~f~~~~~~~~------~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip 221 (513)
.....+.+.||||.|+..+-...+..+ ....-..||++|+..- .-.++.+...+..++.
T Consensus 270 ~el~~ai~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--------~dlkei~~~f~~~~i~ 341 (407)
T COG1419 270 KELAEAIEALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--------EDLKEIIKQFSLFPID 341 (407)
T ss_pred HHHHHHHHHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--------HHHHHHHHHhccCCcc
Confidence 122467899999999876633332222 2456677888988642 2456667777778888
Q ss_pred eEEEEEeeccCC
Q 010318 222 KLLLVVNKMDDH 233 (513)
Q Consensus 222 ~~ivviNK~D~~ 233 (513)
.+ ++||+|..
T Consensus 342 ~~--I~TKlDET 351 (407)
T COG1419 342 GL--IFTKLDET 351 (407)
T ss_pred ee--EEEccccc
Confidence 54 68999984
No 406
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=9.4e-05 Score=69.50 Aligned_cols=155 Identities=18% Similarity=0.220 Sum_probs=98.0
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
++|.++|+--+|||++-....+...... + .-.|....+|.+- +...=..+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPne--T------------------------lflESTski~~d~----is~sfinf 77 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNE--T------------------------LFLESTSKITRDH----ISNSFINF 77 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCc--e------------------------eEeeccCcccHhh----hhhhhcce
Confidence 5599999999999999876543322100 0 0011112222211 11112468
Q ss_pred EEEeCCCCcchHHHH---HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCC---eEEEEEeeccCCCCC
Q 010318 163 TILDAPGHKSYVPNM---ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT---KLLLVVNKMDDHTVN 236 (513)
Q Consensus 163 ~liDtPGh~~f~~~~---~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip---~~ivviNK~D~~~~~ 236 (513)
.++|-||+-+|.... ..-.+.+-+.|+||||.+.-++ +-++-|+...+++++. ++=|+|-|.|-...+
T Consensus 78 ~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~e------ala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 78 QVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYME------ALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred EEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHH------HHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 899999998774332 2235688999999999987643 5677788888887542 277899999976555
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG 274 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g 274 (513)
+.-+....+.++...-|+..|+. +-.+.|.-+|-...
T Consensus 152 ~kietqrdI~qr~~d~l~d~gle-~v~vsf~LTSIyDH 188 (347)
T KOG3887|consen 152 FKIETQRDIHQRTNDELADAGLE-KVQVSFYLTSIYDH 188 (347)
T ss_pred hhhhhHHHHHHHhhHHHHhhhhc-cceEEEEEeeecch
Confidence 44445556777777777777765 23456667765443
No 407
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.62 E-value=7.2e-05 Score=77.10 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=40.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
.++.++|.+|+|||||+|+|+........ ........|.|.+.....+ +..+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~-------------------------~~~~s~~pgtT~~~~~~~~---~~~~ 206 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKD-------------------------VITTSPFPGTTLDLIEIPL---DDGH 206 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcc-------------------------eeeecCCCCeEeeEEEEEe---CCCC
Confidence 58999999999999999999754321000 0001223788877654433 2346
Q ss_pred EEEeCCCCc
Q 010318 163 TILDAPGHK 171 (513)
Q Consensus 163 ~liDtPGh~ 171 (513)
.++||||..
T Consensus 207 ~l~DtPG~~ 215 (360)
T TIGR03597 207 SLYDTPGII 215 (360)
T ss_pred EEEECCCCC
Confidence 899999964
No 408
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.62 E-value=0.00068 Score=74.07 Aligned_cols=181 Identities=17% Similarity=0.236 Sum_probs=126.9
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe-eccCCCCCchHHH
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKER 241 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN-K~D~~~~~~~~~~ 241 (513)
.=-|+-|...-+...+..+...++-+-|+.+.-| +-|+..+.++...+. +|++.| |++.
T Consensus 390 ikad~~Gs~eal~~~l~~~~~~~~~~~v~~~~vG---------~i~~~Dv~~a~~~~a--~i~~Fnv~~~~--------- 449 (587)
T TIGR00487 390 LKADVQGSLEAIKNSLEKLNNEEVKVKVIHSGVG---------GITETDISLASASNA--IIIGFNVRPDA--------- 449 (587)
T ss_pred EEeCCcchHHHHHHHHHhhcccCCeEEEEEeecC---------CCchhhHHHHHhcCC--EEEEEecCCCH---------
Confidence 3458888878888888888888889999998877 578888888888863 567777 3332
Q ss_pred HHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEEEEEc
Q 010318 242 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK 321 (513)
Q Consensus 242 ~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~~ 321 (513)
......++.| ++++.-+ =|-+|++. +.+.+..+..|......--+..|..+|+
T Consensus 450 ------~~~~~a~~~~------v~i~~~~-----iIY~l~d~----------~~~~~~~~~~~~~~~~~~g~a~v~~vf~ 502 (587)
T TIGR00487 450 ------TAKNVAEAEN------VDIRYYS-----VIYKLIDE----------IRAAMKGMLDPEYEEEIIGQAEVRQVFN 502 (587)
T ss_pred ------HHHHHHHHcC------CeEEEeC-----hHHHHHHH----------HHHHHHhccCcceeeEeeeeEEEEEEEe
Confidence 1222333333 3443321 12233221 3344444333333232334566778884
Q ss_pred --cCCeEEEEEEEeeeecCCCEEEEecCCc---EEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEcc
Q 010318 322 --DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 392 (513)
Q Consensus 322 --~~G~vv~g~v~sG~l~~gd~v~~~p~~~---~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 392 (513)
..|.++.++|..|+|+.|..+.+...+. ..+|.||+++.++++++..|+-|++.+.+. .+++.||+|-.
T Consensus 503 ~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~~~k~~v~ev~~g~ecgi~~~~~--~~~~~gD~i~~ 576 (587)
T TIGR00487 503 VPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLKRFKDDVKEVSNGYECGIGIKNY--NDIKEGDIIEA 576 (587)
T ss_pred cCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhhccCccccEECCCCEEEEEEecc--ccCCCCCEEEE
Confidence 4589999999999999999999988764 467999999999999999999999999975 67999999853
No 409
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.00015 Score=74.96 Aligned_cols=66 Identities=18% Similarity=0.266 Sum_probs=43.2
Q ss_pred CCeEEEEEeCCCCcch----HHHHHHhhh-----hcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010318 158 ETTRFTILDAPGHKSY----VPNMISGAS-----QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f----~~~~~~~~~-----~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN 228 (513)
.++.+.||||||.... +..+..-+. .+.-.+||+||+.+. ....+.+......++.. +++|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--------~~~~~~~~~f~~~~~~g--lIlT 367 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--------HHTLTVLKAYESLNYRR--ILLT 367 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--------HHHHHHHHHhcCCCCCE--EEEE
Confidence 4678999999997533 222222111 245789999999872 24455555556678874 4799
Q ss_pred eccCC
Q 010318 229 KMDDH 233 (513)
Q Consensus 229 K~D~~ 233 (513)
|+|..
T Consensus 368 KLDEt 372 (432)
T PRK12724 368 KLDEA 372 (432)
T ss_pred cccCC
Confidence 99983
No 410
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.00028 Score=73.51 Aligned_cols=66 Identities=17% Similarity=0.272 Sum_probs=42.7
Q ss_pred eCCeEEEEEeCCCCcchHHHH---HHh---hhhcCEEEEEEECCCCcccccccCCcch-HHHHHHHHHcCCCeEEEEEee
Q 010318 157 TETTRFTILDAPGHKSYVPNM---ISG---ASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKTLGVTKLLLVVNK 229 (513)
Q Consensus 157 ~~~~~i~liDtPGh~~f~~~~---~~~---~~~~D~~ilVVda~~g~~e~~~~~~~qt-~e~l~~~~~~~ip~~ivviNK 229 (513)
..++.+.||||+|........ +.. .....-.+||+||+.+ .++ .+.+......++.. +++||
T Consensus 267 l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~---------~~~~~~~~~~f~~~~~~~--~I~TK 335 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS---------GDTLDEVISAYQGHGIHG--CIITK 335 (420)
T ss_pred hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC---------HHHHHHHHHHhcCCCCCE--EEEEe
Confidence 356789999999976543322 122 2335678899999965 233 33444455567774 47999
Q ss_pred ccCC
Q 010318 230 MDDH 233 (513)
Q Consensus 230 ~D~~ 233 (513)
+|..
T Consensus 336 lDEt 339 (420)
T PRK14721 336 VDEA 339 (420)
T ss_pred eeCC
Confidence 9983
No 411
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.00036 Score=72.16 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=42.3
Q ss_pred CCeEEEEEeCCCCcch----HHHHHHhhh--hcC-EEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010318 158 ETTRFTILDAPGHKSY----VPNMISGAS--QAD-IGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 230 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f----~~~~~~~~~--~~D-~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 230 (513)
.++.+.||||||.... +..+...+. .++ -.+||+||+.+. ....+.+.....+++.. +++||+
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--------~~~~~~~~~~~~~~~~~--~I~TKl 322 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--------SDVKEIFHQFSPFSYKT--VIFTKL 322 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--------HHHHHHHHHhcCCCCCE--EEEEec
Confidence 5688999999996443 222222222 223 689999999873 23444555555567774 479999
Q ss_pred cCC
Q 010318 231 DDH 233 (513)
Q Consensus 231 D~~ 233 (513)
|..
T Consensus 323 Det 325 (388)
T PRK12723 323 DET 325 (388)
T ss_pred cCC
Confidence 983
No 412
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.58 E-value=0.00015 Score=72.38 Aligned_cols=80 Identities=21% Similarity=0.186 Sum_probs=52.8
Q ss_pred hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcc
Q 010318 181 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 260 (513)
Q Consensus 181 ~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~ 260 (513)
++.+|.+++|+|+..+.+. . ....+.+..+...++| +++|+||+|+. +..+ . .. ........+
T Consensus 76 ~anvD~vllV~d~~~p~~s----~-~~ldr~L~~~~~~~ip-~iIVlNK~DL~--~~~~-~----~~-~~~~~~~~g--- 138 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFN----P-RLLDRYLVAAEAAGIE-PVIVLTKADLL--DDEE-E----EL-ELVEALALG--- 138 (287)
T ss_pred EEeCCEEEEEEEcCCCCCC----H-HHHHHHHHHHHHcCCC-EEEEEEHHHCC--ChHH-H----HH-HHHHHHhCC---
Confidence 6789999999999886421 0 1334455566777888 88999999993 2111 1 01 111122233
Q ss_pred cCCeeEEEeecccccccccc
Q 010318 261 KKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 261 ~~~~~iipiSa~~g~gi~~l 280 (513)
.+++++||++|.|++++
T Consensus 139 ---~~v~~vSA~~g~gi~~L 155 (287)
T cd01854 139 ---YPVLAVSAKTGEGLDEL 155 (287)
T ss_pred ---CeEEEEECCCCccHHHH
Confidence 47999999999999875
No 413
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=97.57 E-value=0.00045 Score=57.76 Aligned_cols=76 Identities=21% Similarity=0.339 Sum_probs=59.2
Q ss_pred eEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC--cEEEEEEEEECCe-----------eecccCCCCeEEEEec
Q 010318 313 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDN-----------RVRHAGPGENLRIRLS 377 (513)
Q Consensus 313 ~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~--~~~~V~~i~~~~~-----------~v~~a~aG~~v~i~l~ 377 (513)
+..|.++. +|.|++++..|.+|+|+.||.|.++... ...+||+|...+. +++++.|..-+-+...
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~ 81 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAP 81 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeC
Confidence 45677776 6899999999999999999999998765 3579999988743 8889987777777666
Q ss_pred cCCcccceeeeEE
Q 010318 378 GIEEEDILSGFVL 390 (513)
Q Consensus 378 ~~~~~~i~~G~vl 390 (513)
|++. +..|+-+
T Consensus 82 gL~~--v~aG~~~ 92 (110)
T cd03703 82 DLEK--AIAGSPL 92 (110)
T ss_pred CCcc--ccCCCEE
Confidence 6543 3556554
No 414
>PRK10867 signal recognition particle protein; Provisional
Probab=97.56 E-value=0.00044 Score=72.50 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=39.0
Q ss_pred CCeEEEEEeCCCCcch----HHHHHH--hhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeec
Q 010318 158 ETTRFTILDAPGHKSY----VPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 230 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f----~~~~~~--~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~ 230 (513)
.++.+.||||||.... +..+.. ....+|-++||+|+..| ....+.+.... ..++. =+++||+
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---------q~av~~a~~F~~~~~i~--giIlTKl 250 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---------QDAVNTAKAFNEALGLT--GVILTKL 250 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---------HHHHHHHHHHHhhCCCC--EEEEeCc
Confidence 4578999999995433 222111 12368889999999765 12333333322 34555 3578999
Q ss_pred cC
Q 010318 231 DD 232 (513)
Q Consensus 231 D~ 232 (513)
|.
T Consensus 251 D~ 252 (433)
T PRK10867 251 DG 252 (433)
T ss_pred cC
Confidence 96
No 415
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00037 Score=71.11 Aligned_cols=66 Identities=12% Similarity=0.245 Sum_probs=39.4
Q ss_pred CCeEEEEEeCCCCcchHHHHHHh----h--hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISG----A--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~----~--~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
.++.+.||||||...+-...+.. . ..+|..+||+++.... .+..+.+......++.. +++||+|
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~--------~d~~~i~~~f~~l~i~g--lI~TKLD 353 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS--------ADVMTILPKLAEIPIDG--FIITKMD 353 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH--------HHHHHHHHhcCcCCCCE--EEEEccc
Confidence 35789999999985443322222 2 2568888888875331 12233333334456663 5799999
Q ss_pred CC
Q 010318 232 DH 233 (513)
Q Consensus 232 ~~ 233 (513)
..
T Consensus 354 ET 355 (407)
T PRK12726 354 ET 355 (407)
T ss_pred CC
Confidence 83
No 416
>PRK13796 GTPase YqeH; Provisional
Probab=97.54 E-value=8.9e-05 Score=76.53 Aligned_cols=62 Identities=23% Similarity=0.253 Sum_probs=40.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeE
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 161 (513)
..++.++|.+|+|||||+|+|+....... +.....+.+|.|.+.....+. ..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~-------------------------~~~~~s~~pGTT~~~~~~~l~---~~ 211 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEK-------------------------DVITTSRFPGTTLDKIEIPLD---DG 211 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCcc-------------------------ceEEecCCCCccceeEEEEcC---CC
Confidence 35799999999999999999975431100 000012337888876554442 22
Q ss_pred EEEEeCCCCc
Q 010318 162 FTILDAPGHK 171 (513)
Q Consensus 162 i~liDtPGh~ 171 (513)
..++||||..
T Consensus 212 ~~l~DTPGi~ 221 (365)
T PRK13796 212 SFLYDTPGII 221 (365)
T ss_pred cEEEECCCcc
Confidence 5899999963
No 417
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.54 E-value=0.0014 Score=73.53 Aligned_cols=180 Identities=18% Similarity=0.228 Sum_probs=126.2
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe-eccCCCCCchHHHH
Q 010318 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERY 242 (513)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN-K~D~~~~~~~~~~~ 242 (513)
=-|+-|...-+...+..+..-++-+-|+.+.-| +-|..-+.++...+. +|+..| |++.
T Consensus 593 kad~~Gs~eai~~~l~~l~~~~v~~~i~~~~vG---------~it~~Dv~la~~~~a--~ii~Fnv~~~~---------- 651 (787)
T PRK05306 593 KADVQGSVEALKDSLEKLSTDEVKVNIIHSGVG---------AITESDVTLAAASNA--IIIGFNVRPDA---------- 651 (787)
T ss_pred EeCCcchHHHHHHHHHhhcccCCceEEEeeccC---------CCCHHHHHHHHhcCC--EEEEEcCCCCH----------
Confidence 348888888888888888888899999998877 467888888887763 567776 3332
Q ss_pred HHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEEEEEc-
Q 010318 243 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK- 321 (513)
Q Consensus 243 ~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~~- 321 (513)
.+....++.+ +.+..-+- |-+|++. +.+++..+..|.....-.-...|..+|+
T Consensus 652 -----~~~~~a~~~~------v~i~~~~i-----IY~l~d~----------~~~~~~~~l~~~~~e~~~g~a~v~~vF~~ 705 (787)
T PRK05306 652 -----KARKLAEQEG------VDIRYYSI-----IYDLIDD----------VKAAMSGMLEPEYEEEIIGQAEVREVFKV 705 (787)
T ss_pred -----HHHHHHHHcC------CEEEEeCh-----HHHHHHH----------HHHHHhhccCchhheeeeeeEEEEEEEec
Confidence 1222233332 34433221 2222221 3333443333333333333567778884
Q ss_pred -cCCeEEEEEEEeeeecCCCEEEEecCCc---EEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEcc
Q 010318 322 -DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 392 (513)
Q Consensus 322 -~~G~vv~g~v~sG~l~~gd~v~~~p~~~---~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 392 (513)
..|.++.++|..|.|+.|..+.+...+. ..+|.||.++..+|.++..|+-|+|.+.+. .+++.||+|-.
T Consensus 706 ~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~--~d~~~gD~ie~ 778 (787)
T PRK05306 706 SKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLKRFKDDVKEVRAGYECGIGLENY--NDIKEGDIIEA 778 (787)
T ss_pred CCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhcccCcCccEeCCCCEEEEEeecc--ccCCCCCEEEE
Confidence 4689999999999999999999998775 578999999999999999999999999966 67999999843
No 418
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.53 E-value=0.0014 Score=73.02 Aligned_cols=182 Identities=14% Similarity=0.112 Sum_probs=129.1
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe-eccCCCCCchHH
Q 010318 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKE 240 (513)
Q Consensus 162 i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN-K~D~~~~~~~~~ 240 (513)
+.=-|+-|.-.-+...+..+....+-+-|+.+.-| +-|..-+.++...+. +|++.| |.+.
T Consensus 546 iiKad~~Gs~EAi~~~l~~~~~~~v~i~i~~~~vG---------~it~~Dv~lA~~~~a--~ii~Fnv~~~~-------- 606 (742)
T CHL00189 546 IIKTDTQGSIEAIINSISQIPQKKVQLNILYASLG---------EVTETDVEFASTTNA--EILAFNTNLAP-------- 606 (742)
T ss_pred EEEeCCcchHHHHHHHHHhcCCCcEEEEEEEeecC---------CCCHHHHHHHHhcCC--EEEEeeCCCCH--------
Confidence 34458999888888888888888889999999887 568888888888873 567777 2321
Q ss_pred HHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEEEEE
Q 010318 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF 320 (513)
Q Consensus 241 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~ 320 (513)
.+....++.| +.+..-+ =|-+|++. +.+++..+..|.......-++.|..+|
T Consensus 607 -------~~~~~a~~~~------v~i~~~~-----iIY~lid~----------~~~~~~~~l~~~~~~~~~g~a~v~~vF 658 (742)
T CHL00189 607 -------GAKKAARKLN------IIIKEYQ-----VIYDLLEY----------IEALMEDLLDPEYKKVPIGEAEVKTVF 658 (742)
T ss_pred -------HHHHHHHHcC------CEEEEeC-----hHHHHHHH----------HHHHHhhccCceeeeeeceeEEeeEEE
Confidence 1222233333 3443321 12233221 334444444444434444567788888
Q ss_pred c-cCCeEEEEEEEeeeecCCCEEEEecCCc---EEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEcc
Q 010318 321 K-DMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 392 (513)
Q Consensus 321 ~-~~G~vv~g~v~sG~l~~gd~v~~~p~~~---~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 392 (513)
+ ..|.++.++|.+|.|+.|..+.++..+. ..+|.||.++..+|.++..|+-|+|.+.+. .+++.||+|-.
T Consensus 659 ~~~k~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk~~k~~v~ev~~g~ecgi~i~~~--~d~~~gD~ie~ 732 (742)
T CHL00189 659 PLAKRFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLKRVKEDVEEAQEGNECGIFIEEF--QLWQSGDKIHA 732 (742)
T ss_pred ecCCCEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHhhcCccccEeCCCCEEEEEeeCC--CCCCcCCEEEE
Confidence 4 4589999999999999999999998874 467999999999999999999999999865 56999999853
No 419
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00045 Score=73.36 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=39.4
Q ss_pred CCeEEEEEeCCCCcchHHHH------HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 158 ETTRFTILDAPGHKSYVPNM------ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~------~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
.++.+.||||||...+-... +... .....+|||++..+. ....+.+......+.. -+++||+|
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~--------~Dl~eii~~f~~~~~~--gvILTKlD 495 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHF--------SDLDEVVRRFAHAKPQ--GVVLTKLD 495 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCCh--------hHHHHHHHHHHhhCCe--EEEEecCc
Confidence 46789999999965432221 2222 234678899988652 1334444444554543 47999999
Q ss_pred C
Q 010318 232 D 232 (513)
Q Consensus 232 ~ 232 (513)
.
T Consensus 496 E 496 (559)
T PRK12727 496 E 496 (559)
T ss_pred C
Confidence 8
No 420
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.53 E-value=0.00031 Score=66.29 Aligned_cols=65 Identities=20% Similarity=0.395 Sum_probs=50.9
Q ss_pred CCeEEEEEeC-CCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 158 ETTRFTILDA-PGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 158 ~~~~i~liDt-PGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
+.+.+.++|| +|.+-|-+.+ +..+|++|.|+|++...+ ...++.-.++..++++++.+++||+|.
T Consensus 132 ~~~e~VivDtEAGiEHfgRg~---~~~vD~vivVvDpS~~sl-------~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 132 NRYEVVIVDTEAGIEHFGRGT---IEGVDLVIVVVDPSYKSL-------RTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred ccCcEEEEecccchhhhcccc---ccCCCEEEEEeCCcHHHH-------HHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 3477999999 5777776655 356999999999886433 255667788889998889999999996
No 421
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.52 E-value=0.0013 Score=65.39 Aligned_cols=129 Identities=16% Similarity=0.251 Sum_probs=69.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCC------------cchhHHHHHHHHHhhcCccch-------hhhhhccCch
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQ------------VDDRTIQKYEKEAKDKSRESW-------YMAYIMDTNE 139 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~------------i~~~~~~~~~~~~~~~g~~s~-------~~~~~~d~~~ 139 (513)
.+++..|.++|-.|+||||-++.|.+..-. +....++.++-.+...|-.-. ..+-+.|.-+
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~ 215 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ 215 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH
Confidence 356788999999999999999999544311 111112222222222221000 0001111111
Q ss_pred hhhhcCcEEEeeeEEEEeCCeEEEEEeCCCCcc----hHH---HHHHhhh-----hcCEEEEEEECCCCcccccccCCcc
Q 010318 140 EERIKGKTVEVGRAHFETETTRFTILDAPGHKS----YVP---NMISGAS-----QADIGVLVISARKGEFETGFEKGGQ 207 (513)
Q Consensus 140 ~e~~~giTi~~~~~~~~~~~~~i~liDtPGh~~----f~~---~~~~~~~-----~~D~~ilVVda~~g~~e~~~~~~~q 207 (513)
.-+ -.++.+.|+||+|.-. .+. ...+-+. .++-+++|+||..| ..
T Consensus 216 ~Ak--------------ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG---------qn 272 (340)
T COG0552 216 AAK--------------ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG---------QN 272 (340)
T ss_pred HHH--------------HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC---------hh
Confidence 111 1357799999999322 222 2222222 23448888899988 34
Q ss_pred hHHHHHHHH-HcCCCeEEEEEeeccC
Q 010318 208 TREHVMLAK-TLGVTKLLLVVNKMDD 232 (513)
Q Consensus 208 t~e~l~~~~-~~~ip~~ivviNK~D~ 232 (513)
...+.+... ..++. - +++||+|-
T Consensus 273 al~QAk~F~eav~l~-G-iIlTKlDg 296 (340)
T COG0552 273 ALSQAKIFNEAVGLD-G-IILTKLDG 296 (340)
T ss_pred HHHHHHHHHHhcCCc-e-EEEEeccc
Confidence 555554444 34777 4 58999995
No 422
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.52 E-value=9.1e-05 Score=72.92 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
...+++|+.|+|||||+|+|+.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCc
Confidence 4789999999999999999954
No 423
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.51 E-value=0.00013 Score=71.42 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=48.0
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.....++-|+|-||+|||||+|++........ .+ .....+.|+|+.+....--..
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~---------k~----------------a~vG~~pGVT~~V~~~iri~~ 194 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKK---------KA----------------ARVGAEPGVTRRVSERIRISH 194 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhc---------cc----------------eeccCCCCceeeehhheEecc
Confidence 34678999999999999999999954433211 00 012335899999887555556
Q ss_pred CeEEEEEeCCC
Q 010318 159 TTRFTILDAPG 169 (513)
Q Consensus 159 ~~~i~liDtPG 169 (513)
...+.++||||
T Consensus 195 rp~vy~iDTPG 205 (335)
T KOG2485|consen 195 RPPVYLIDTPG 205 (335)
T ss_pred CCceEEecCCC
Confidence 67799999999
No 424
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.51 E-value=0.00013 Score=65.65 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll 103 (513)
...+++++|.+++|||||+++|.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 45778999999999999999995
No 425
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.49 E-value=0.00013 Score=72.82 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
..++++|++|+|||||+|+|+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhch
Confidence 67999999999999999999654
No 426
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=97.47 E-value=0.00064 Score=55.90 Aligned_cols=60 Identities=22% Similarity=0.375 Sum_probs=50.8
Q ss_pred eEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC-CeeecccCCCCeEEE
Q 010318 313 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRI 374 (513)
Q Consensus 313 ~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~-~~~v~~a~aG~~v~i 374 (513)
+..|.++. ++.|.+++..|.+|+|++||.++. +....+|+++... .+.+.+|.|++.|.+
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~--G~~~GkVr~~~d~~g~~v~~a~Ps~~v~i 64 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVA--GGTYGKIRTMVDENGKALLEAGPSTPVEI 64 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEE--CCccceEEEEECCCCCCccccCCCCCEEE
Confidence 34566665 688999999999999999999999 4556899999886 678999999999864
No 427
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.47 E-value=0.00024 Score=74.37 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=40.5
Q ss_pred CCeEEEEEeCCCCcchHHHHHH------hhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeec
Q 010318 158 ETTRFTILDAPGHKSYVPNMIS------GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 230 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~------~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~ 230 (513)
.++.+.||||||...+-...+. ....+|-++||+|+..| ....+++.... ..++. - +++||+
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---------q~~~~~a~~f~~~v~i~-g-iIlTKl 249 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---------QDAVNTAKTFNERLGLT-G-VVLTKL 249 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---------HHHHHHHHHHHhhCCCC-E-EEEeCc
Confidence 4577999999995433221211 13368999999999865 23344443333 45665 2 469999
Q ss_pred cC
Q 010318 231 DD 232 (513)
Q Consensus 231 D~ 232 (513)
|.
T Consensus 250 D~ 251 (428)
T TIGR00959 250 DG 251 (428)
T ss_pred cC
Confidence 96
No 428
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.45 E-value=0.00027 Score=72.90 Aligned_cols=97 Identities=21% Similarity=0.170 Sum_probs=60.8
Q ss_pred CcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhh
Q 010318 170 HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKM 249 (513)
Q Consensus 170 h~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l 249 (513)
.++|.+........+|++++|+|+.+.. ......+.... .+.| +++|+||+|+...+. ..+.+.+.+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~--------~s~~~~l~~~~-~~~p-iilV~NK~DLl~k~~---~~~~~~~~l 116 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE--------GSLIPELKRFV-GGNP-VLLVGNKIDLLPKSV---NLSKIKEWM 116 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC--------CCccHHHHHHh-CCCC-EEEEEEchhhCCCCC---CHHHHHHHH
Confidence 4567665555557889999999987642 12222222111 2556 899999999943211 123444445
Q ss_pred HhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 250 TPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 250 ~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
..+++..++. ...++++||++|.|+.++++
T Consensus 117 ~~~~k~~g~~---~~~i~~vSAk~g~gv~eL~~ 146 (360)
T TIGR03597 117 KKRAKELGLK---PVDIILVSAKKGNGIDELLD 146 (360)
T ss_pred HHHHHHcCCC---cCcEEEecCCCCCCHHHHHH
Confidence 5556666653 12589999999999998654
No 429
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.43 E-value=0.00047 Score=67.85 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=43.4
Q ss_pred CeEEEEEeCCCCcch----HHHHHHh--hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 159 TTRFTILDAPGHKSY----VPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 159 ~~~i~liDtPGh~~f----~~~~~~~--~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
++.+.||||||...+ +..+... ...+|-.+||+||+.+. ....+.+......++.. +++||+|.
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--------~d~~~~~~~f~~~~~~~--~I~TKlDe 223 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--------KDMIEIITNFKDIHIDG--IVFTKFDE 223 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--------HHHHHHHHHhCCCCCCE--EEEEeecC
Confidence 578999999997643 3333222 23678899999998541 23445555555667774 47999998
Q ss_pred C
Q 010318 233 H 233 (513)
Q Consensus 233 ~ 233 (513)
.
T Consensus 224 t 224 (270)
T PRK06731 224 T 224 (270)
T ss_pred C
Confidence 3
No 430
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.41 E-value=0.00074 Score=70.99 Aligned_cols=65 Identities=17% Similarity=0.210 Sum_probs=41.4
Q ss_pred CCeEEEEEeCCCCcch-------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010318 158 ETTRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 230 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f-------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 230 (513)
.++.+.||||||+..+ +..++......+-+.||++++.+. ....+.+......++.. +++||+
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--------~~l~~~~~~f~~~~~~~--vI~TKl 367 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--------EDLKDIYKHFSRLPLDG--LIFTKL 367 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--------HHHHHHHHHhCCCCCCE--EEEecc
Confidence 3578999999997544 222222222455778999998652 13344445555556542 589999
Q ss_pred cC
Q 010318 231 DD 232 (513)
Q Consensus 231 D~ 232 (513)
|.
T Consensus 368 De 369 (424)
T PRK05703 368 DE 369 (424)
T ss_pred cc
Confidence 98
No 431
>PRK01889 GTPase RsgA; Reviewed
Probab=97.37 E-value=0.00065 Score=69.88 Aligned_cols=79 Identities=22% Similarity=0.207 Sum_probs=54.1
Q ss_pred hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcc
Q 010318 181 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 260 (513)
Q Consensus 181 ~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~ 260 (513)
++.+|.+++|+++.... + .....+.+..+...|++ .++++||+|+ ++..+ ...+.+..+ ..
T Consensus 110 aANvD~vliV~s~~p~~-----~-~~~ldr~L~~a~~~~i~-piIVLNK~DL--~~~~~----~~~~~~~~~--~~---- 170 (356)
T PRK01889 110 AANVDTVFIVCSLNHDF-----N-LRRIERYLALAWESGAE-PVIVLTKADL--CEDAE----EKIAEVEAL--AP---- 170 (356)
T ss_pred EEeCCEEEEEEecCCCC-----C-hhHHHHHHHHHHHcCCC-EEEEEEChhc--CCCHH----HHHHHHHHh--CC----
Confidence 47899999999997542 1 12455667778889999 6789999999 33111 122222222 22
Q ss_pred cCCeeEEEeecccccccccc
Q 010318 261 KKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 261 ~~~~~iipiSa~~g~gi~~l 280 (513)
..+++++|+++|.|+.+|
T Consensus 171 --g~~Vi~vSa~~g~gl~~L 188 (356)
T PRK01889 171 --GVPVLAVSALDGEGLDVL 188 (356)
T ss_pred --CCcEEEEECCCCccHHHH
Confidence 357999999999999875
No 432
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.36 E-value=0.0014 Score=67.36 Aligned_cols=134 Identities=20% Similarity=0.275 Sum_probs=71.9
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCC-------c-----chhHHHHHHHHHhhcCccchhhhhhccCchhhh-hcC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQ-------V-----DDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER-IKG 145 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~-------i-----~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~-~~g 145 (513)
.+++..|.++|--||||||.++.|...... + .......++.-+...|-.-| . ......+.+. ..|
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f-~-~~~~~~Pv~Iak~a 174 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFF-G-SGTEKDPVEIAKAA 174 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCcee-c-CCCCCCHHHHHHHH
Confidence 456788999999999999999998543221 0 00011111112211111100 0 0011111111 111
Q ss_pred cEEEeeeEEEEeCCeEEEEEeCCCCcch----HHHH--HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHH--HHHH
Q 010318 146 KTVEVGRAHFETETTRFTILDAPGHKSY----VPNM--ISGASQADIGVLVISARKGEFETGFEKGGQTREHVM--LAKT 217 (513)
Q Consensus 146 iTi~~~~~~~~~~~~~i~liDtPGh~~f----~~~~--~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~--~~~~ 217 (513)
+ ..+....+.+.|+||+|.... +..+ +.....+|=++|||||..| |...... .-..
T Consensus 175 l------~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G----------QdA~~~A~aF~e~ 238 (451)
T COG0541 175 L------EKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG----------QDAVNTAKAFNEA 238 (451)
T ss_pred H------HHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc----------hHHHHHHHHHhhh
Confidence 1 113335678999999994332 3333 2334589999999999987 5443322 2234
Q ss_pred cCCCeEEEEEeeccC
Q 010318 218 LGVTKLLLVVNKMDD 232 (513)
Q Consensus 218 ~~ip~~ivviNK~D~ 232 (513)
+++. - |++||+|-
T Consensus 239 l~it-G-vIlTKlDG 251 (451)
T COG0541 239 LGIT-G-VILTKLDG 251 (451)
T ss_pred cCCc-e-EEEEcccC
Confidence 4666 3 58999996
No 433
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.34 E-value=0.0014 Score=55.12 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=44.3
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCC---eEEEEEee
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT---KLLLVVNK 229 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip---~~ivviNK 229 (513)
.+.++|||+..... ....+..+|.+|+|++++.... ..+.+.+..++..+.+ ++.+++|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDLPSI-------RNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCChHHH-------HHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 79999999976543 3456788999999999876533 3566666777776654 68889986
No 434
>PRK12288 GTPase RsgA; Reviewed
Probab=97.34 E-value=0.00071 Score=69.16 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=52.6
Q ss_pred hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcc
Q 010318 181 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 260 (513)
Q Consensus 181 ~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~ 260 (513)
++++|.+++|.+..... ++ ....+.+..+...++| +++|+||+|+. +..+ ...+ ......+...|
T Consensus 118 aANvD~vlIV~s~~p~~-----s~-~~Ldr~L~~a~~~~i~-~VIVlNK~DL~--~~~~--~~~~-~~~~~~y~~~g--- 182 (347)
T PRK12288 118 AANIDQIVIVSAVLPEL-----SL-NIIDRYLVACETLGIE-PLIVLNKIDLL--DDEG--RAFV-NEQLDIYRNIG--- 182 (347)
T ss_pred EEEccEEEEEEeCCCCC-----CH-HHHHHHHHHHHhcCCC-EEEEEECccCC--CcHH--HHHH-HHHHHHHHhCC---
Confidence 57899999888865431 11 1334445566677898 78999999993 2111 1111 22222334443
Q ss_pred cCCeeEEEeeccccccccccc
Q 010318 261 KKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 261 ~~~~~iipiSa~~g~gi~~l~ 281 (513)
.+++++||++|.|+.++.
T Consensus 183 ---~~v~~vSA~tg~GideL~ 200 (347)
T PRK12288 183 ---YRVLMVSSHTGEGLEELE 200 (347)
T ss_pred ---CeEEEEeCCCCcCHHHHH
Confidence 479999999999998853
No 435
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.33 E-value=0.00043 Score=68.44 Aligned_cols=85 Identities=19% Similarity=0.187 Sum_probs=54.2
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe--
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-- 157 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~-- 157 (513)
..++.++|||.||+|||||+|+|.. .... .. .| +=.||+......+.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~--~~a~---------------~~--Nf------------PF~TIdPn~a~V~v~d 66 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTK--SKAG---------------AA--NF------------PFCTIDPNEARVEVPD 66 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhc--CCCC---------------cc--CC------------CcceeccccceeecCc
Confidence 3678999999999999999999932 1110 00 11 11233332222111
Q ss_pred ------------C---CeEEEEEeCCCCc-------chHHHHHHhhhhcCEEEEEEECCC
Q 010318 158 ------------E---TTRFTILDAPGHK-------SYVPNMISGASQADIGVLVISARK 195 (513)
Q Consensus 158 ------------~---~~~i~liDtPGh~-------~f~~~~~~~~~~~D~~ilVVda~~ 195 (513)
. .-.++++|++|.. -.-+..++-++.+|+++-||+|..
T Consensus 67 ~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 67 SRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred hHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 1 1348999999953 235556667889999999999865
No 436
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.32 E-value=0.0024 Score=58.47 Aligned_cols=63 Identities=19% Similarity=0.349 Sum_probs=47.0
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
.+.|||||+.... .....+..+|.+|+|+++..... ..+...+..+...+.+.+.+++|++|.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~~~~~~~~~~~iv~N~~~~ 126 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSL-------RDADRVKGLLEALGIKVVGVIVNRVRP 126 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchH-------HHHHHHHHHHHHcCCceEEEEEeCCcc
Confidence 7999999986544 34556789999999999886532 245555666666677767789999996
No 437
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.32 E-value=0.0027 Score=56.07 Aligned_cols=64 Identities=19% Similarity=0.193 Sum_probs=44.0
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-cCCCeEEEEEeeccC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMDD 232 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-~~ip~~ivviNK~D~ 232 (513)
+.+.++|+|+.... .....+..+|.+++|++++.... ..+...+..+.. .+.+++.+++|+++.
T Consensus 45 yd~VIiD~p~~~~~--~~~~~l~~aD~vviv~~~~~~s~-------~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGISD--NVLDFFLAADEVIVVTTPEPTSI-------TDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCCH--HHHHHHHhCCeEEEEcCCChhHH-------HHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 78999999986433 33456889999999999875422 234444544433 234458899999985
No 438
>PRK00098 GTPase RsgA; Reviewed
Probab=97.28 E-value=0.00029 Score=70.71 Aligned_cols=24 Identities=25% Similarity=0.123 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCChHHHHhHHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
...++++|++|+|||||+|+|+..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999643
No 439
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.0075 Score=63.50 Aligned_cols=181 Identities=18% Similarity=0.225 Sum_probs=113.9
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHH
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 242 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~ 242 (513)
.=-||-|.-.-+...+.-+...++-+-++.+.-| +-|..-+.++...+ . +|+..| +.-...
T Consensus 311 iKaDt~GSlEAL~~~L~~~~~~~v~~~i~~~~VG---------~ite~DV~lA~as~-a-vIigFn------V~~~~~-- 371 (509)
T COG0532 311 LKADTQGSLEALKGSLKKLGVDEVKVRIIHAGVG---------GITESDVMLAAASD-A-VIIGFN------VRVDPE-- 371 (509)
T ss_pred EEEcccchHHHHHHHHHhcCCCceEEEEEEeecC---------CCChhhHHHHHhcC-C-EEEEEe------cCCCHH--
Confidence 3457778766666666666777777777777766 45666666776666 3 566666 211111
Q ss_pred HHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEEEEE--
Q 010318 243 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF-- 320 (513)
Q Consensus 243 ~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~-- 320 (513)
........+ +.+..-+ =|.++++. +..++..+..|.....-.-...+..+|
T Consensus 372 ------a~~~ae~~~------V~I~~~~-----iIY~lied----------~~~~~~g~l~p~~~e~~~g~~~~r~v~~~ 424 (509)
T COG0532 372 ------ARRLAESEG------VKIRYYD-----VIYKLIED----------VEAAMKGMLEPEKKERVIGLAEVRAVFKL 424 (509)
T ss_pred ------HHHHHHhcC------CcEEEcc-----hHHHHHHH----------HHHHHHhccchhhhhhcccceEEEEEEEc
Confidence 111222222 2222211 12222221 333344333333222222233344444
Q ss_pred ccCCeEEEEEEEeeeecCCCEEEEecCC-c--EEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEc
Q 010318 321 KDMGTVVMGKVESGSVREGDSLLVMPNK-A--QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 391 (513)
Q Consensus 321 ~~~G~vv~g~v~sG~l~~gd~v~~~p~~-~--~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 391 (513)
++.|.++.++|..|.++.|..+.+...+ . ..+|.+|+++..++.++.+|+-|++.+.+ ..+++.||+|-
T Consensus 425 ~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk~~kddv~ev~~G~ecgI~i~~--~~di~~gD~le 496 (509)
T COG0532 425 PKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLKRFKDDVKEVRKGQECGIAIEN--YRDIKEGDILE 496 (509)
T ss_pred CCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeeeccCccHhHhccCcEEEEEecC--cccCCCCCEEE
Confidence 5689999999999999999999998554 3 37999999999999999999999999997 56799999884
No 440
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.0011 Score=66.52 Aligned_cols=66 Identities=27% Similarity=0.356 Sum_probs=42.9
Q ss_pred EEeCCeEEEEEeCCCCcc----hHHHHHHh--hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH--HcCCCeEEEE
Q 010318 155 FETETTRFTILDAPGHKS----YVPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK--TLGVTKLLLV 226 (513)
Q Consensus 155 ~~~~~~~i~liDtPGh~~----f~~~~~~~--~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~--~~~ip~~ivv 226 (513)
|..+++.+.|+||.|... ...+|..- +-.+|-+|+|+||+-| |..+....+- ..++- -|+
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG----------Qaae~Qa~aFk~~vdvg--~vI 246 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG----------QAAEAQARAFKETVDVG--AVI 246 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc----------HhHHHHHHHHHHhhccc--eEE
Confidence 445678899999999432 23334332 2369999999999987 5544322221 22454 367
Q ss_pred EeeccC
Q 010318 227 VNKMDD 232 (513)
Q Consensus 227 iNK~D~ 232 (513)
|||+|-
T Consensus 247 lTKlDG 252 (483)
T KOG0780|consen 247 LTKLDG 252 (483)
T ss_pred EEeccc
Confidence 999995
No 441
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.19 E-value=0.0018 Score=65.63 Aligned_cols=134 Identities=16% Similarity=0.213 Sum_probs=80.9
Q ss_pred cCcEEEeeeEEEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCc---ccccccCCcchHHHHHHHHH---
Q 010318 144 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETGFEKGGQTREHVMLAKT--- 217 (513)
Q Consensus 144 ~giTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~---~e~~~~~~~qt~e~l~~~~~--- 217 (513)
+..|..+....|..++..+.++|++|++...+.+......++++|+|||.++-. .|... .....+.+.+...
T Consensus 145 r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~--~nrl~esl~~f~~i~~ 222 (317)
T cd00066 145 RVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDES--TNRMQESLNLFDSICN 222 (317)
T ss_pred ecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCc--chHHHHHHHHHHHHHh
Confidence 344555555667888999999999999999999999999999999999987621 00000 0123333333332
Q ss_pred ----cCCCeEEEEEeeccCCC------------CCch--HHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccc
Q 010318 218 ----LGVTKLLLVVNKMDDHT------------VNWS--KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 279 (513)
Q Consensus 218 ----~~ip~~ivviNK~D~~~------------~~~~--~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~ 279 (513)
.+.| +++++||.|+.. .+|. ...++...+-+...+..+.-.....+-...++|..-.++..
T Consensus 223 ~~~~~~~p-ill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~ 301 (317)
T cd00066 223 SRWFANTS-IILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRF 301 (317)
T ss_pred CccccCCC-EEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHH
Confidence 3678 999999999621 0111 12233333333333333221112245556678877777765
Q ss_pred c
Q 010318 280 R 280 (513)
Q Consensus 280 l 280 (513)
.
T Consensus 302 v 302 (317)
T cd00066 302 V 302 (317)
T ss_pred H
Confidence 4
No 442
>PRK13796 GTPase YqeH; Provisional
Probab=97.17 E-value=0.0016 Score=67.18 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=58.1
Q ss_pred chHHHHHHhhhhcC-EEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhH
Q 010318 172 SYVPNMISGASQAD-IGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMT 250 (513)
Q Consensus 172 ~f~~~~~~~~~~~D-~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~ 250 (513)
+|. .++..+...| .+++|||+.+-. ......+.... .+.| +++|+||+|+...+ ...+.+.+.+.
T Consensus 58 ~~~-~~l~~i~~~~~lIv~VVD~~D~~--------~s~~~~L~~~~-~~kp-viLViNK~DLl~~~---~~~~~i~~~l~ 123 (365)
T PRK13796 58 DFL-KLLNGIGDSDALVVNVVDIFDFN--------GSWIPGLHRFV-GNNP-VLLVGNKADLLPKS---VKKNKVKNWLR 123 (365)
T ss_pred HHH-HHHHhhcccCcEEEEEEECccCC--------CchhHHHHHHh-CCCC-EEEEEEchhhCCCc---cCHHHHHHHHH
Confidence 444 4666677666 999999998732 12223332221 2566 88999999994321 11223334444
Q ss_pred hhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 251 PFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 251 ~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.+.+..|+. ...++++||++|.|+.++++
T Consensus 124 ~~~k~~g~~---~~~v~~vSAk~g~gI~eL~~ 152 (365)
T PRK13796 124 QEAKELGLR---PVDVVLISAQKGHGIDELLE 152 (365)
T ss_pred HHHHhcCCC---cCcEEEEECCCCCCHHHHHH
Confidence 455555653 12689999999999988654
No 443
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.15 E-value=0.0048 Score=64.40 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=57.2
Q ss_pred hcCcEEEeeeEEEEeCC---eEEEEEeCCCCc-------------chHHHHHHhhhhcCEEEEEEECCCCcccccccCCc
Q 010318 143 IKGKTVEVGRAHFETET---TRFTILDAPGHK-------------SYVPNMISGASQADIGVLVISARKGEFETGFEKGG 206 (513)
Q Consensus 143 ~~giTi~~~~~~~~~~~---~~i~liDtPGh~-------------~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~ 206 (513)
..|.|+.--...+...+ .+..++|.||.. +...+.-..+..++++||+|- +|...+.- .
T Consensus 392 r~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ--DGSVDAER---S 466 (980)
T KOG0447|consen 392 KEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ--DGSVDAER---S 466 (980)
T ss_pred cCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec--cCCcchhh---h
Confidence 45777766555565544 468999999942 224444556789999999983 22111000 0
Q ss_pred chHHHHHHHHHcCCCeEEEEEeeccCCCCC-chHHHHHHHHh
Q 010318 207 QTREHVMLAKTLGVTKLLLVVNKMDDHTVN-WSKERYDEIES 247 (513)
Q Consensus 207 qt~e~l~~~~~~~ip~~ivviNK~D~~~~~-~~~~~~~~i~~ 247 (513)
.--.....+.-.|.. -|+|++|+|+...+ -+..+.+.|.+
T Consensus 467 nVTDLVsq~DP~GrR-TIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 467 IVTDLVSQMDPHGRR-TIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred hHHHHHHhcCCCCCe-eEEEEeecchhhhccCCHHHHHHHHh
Confidence 111222334445665 78999999995332 13455555554
No 444
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.14 E-value=0.00054 Score=63.34 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=37.0
Q ss_pred CeEEEEEeCCCCcchHHHH-----HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCC
Q 010318 159 TTRFTILDAPGHKSYVPNM-----ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 233 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~-----~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 233 (513)
...+.||-+.|..+-...+ .......+.+|.||||..-.. ......+. ........ +|++||+|+.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~-------~~~~~~~~-~~Qi~~AD-vIvlnK~D~~ 154 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDE-------LENIPELL-REQIAFAD-VIVLNKIDLV 154 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGG-------HTTHCHHH-HHHHCT-S-EEEEE-GGGH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccc-------cccchhhh-hhcchhcC-EEEEeccccC
Confidence 4568899999955443331 222346799999999965210 12222222 33334333 4799999993
No 445
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.11 E-value=0.006 Score=61.72 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
+.+...+.|--|||||||+++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 5677889999999999999999854
No 446
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.0013 Score=73.03 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
...|+++|+.|+||||++..|..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 45789999999999999999864
No 447
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.06 E-value=0.00023 Score=75.32 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=39.3
Q ss_pred eCCeEEEEEeCCCCcchHHHH---HHhh---hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010318 157 TETTRFTILDAPGHKSYVPNM---ISGA---SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 230 (513)
Q Consensus 157 ~~~~~i~liDtPGh~~f~~~~---~~~~---~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 230 (513)
..++.+.+|||+|.......+ +..+ ..+.-.+||+|+..+. ....+.+......++.. +++||+
T Consensus 332 L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--------~~l~~i~~~f~~~~~~g--~IlTKl 401 (484)
T PRK06995 332 LRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--------DTLNEVVQAYRGPGLAG--CILTKL 401 (484)
T ss_pred ccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--------HHHHHHHHHhccCCCCE--EEEeCC
Confidence 356679999999954332221 1111 1234478999998762 12333444455566663 468999
Q ss_pred cC
Q 010318 231 DD 232 (513)
Q Consensus 231 D~ 232 (513)
|.
T Consensus 402 De 403 (484)
T PRK06995 402 DE 403 (484)
T ss_pred CC
Confidence 97
No 448
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.05 E-value=7.3e-05 Score=67.47 Aligned_cols=153 Identities=19% Similarity=0.250 Sum_probs=98.6
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe-
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT- 160 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~- 160 (513)
...+-|+|.-++|||+++.+-++..-.- ++ | .-|-++....-+.|+++
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nfs~----------------------~y--------R-AtIgvdfalkVl~wdd~t 73 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNFSY----------------------HY--------R-ATIGVDFALKVLQWDDKT 73 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHHHH----------------------HH--------H-HHHhHHHHHHHhccChHH
Confidence 4568899999999999998775443210 00 0 00111111122344443
Q ss_pred --EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc----C--CCeEEEEEeeccC
Q 010318 161 --RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----G--VTKLLLVVNKMDD 232 (513)
Q Consensus 161 --~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~----~--ip~~ivviNK~D~ 232 (513)
++.|+|..|+++|-.++--..+.|.++.+|+|.+.... |+ +-.+..-.+-..+ | +| +|+..||+|.
T Consensus 74 ~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~t---fe--~~skwkqdldsk~qLpng~Pv~-~vllankCd~ 147 (229)
T KOG4423|consen 74 IVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLT---FE--PVSKWKQDLDSKLQLPNGTPVP-CVLLANKCDQ 147 (229)
T ss_pred HHHHHHhcchhhhhhcceEEEEecCCcceEEEEEcccccc---cc--HHHHHHHhccCcccCCCCCcch-heeccchhcc
Confidence 56899999999998888777889999999999887543 22 2222221221111 2 55 6778899998
Q ss_pred CCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
..| ...+--..+..+.++.||. -+..+|++...|+.+..
T Consensus 148 --e~~---a~~~~~~~~d~f~kengf~-----gwtets~Kenkni~Ea~ 186 (229)
T KOG4423|consen 148 --EKS---AKNEATRQFDNFKKENGFE-----GWTETSAKENKNIPEAQ 186 (229)
T ss_pred --ChH---hhhhhHHHHHHHHhccCcc-----ceeeeccccccChhHHH
Confidence 333 3334445667777888875 68999999999998853
No 449
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.04 E-value=0.0023 Score=65.47 Aligned_cols=87 Identities=16% Similarity=0.211 Sum_probs=61.3
Q ss_pred hcCcEEEeeeEEEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCc---ccccccCCcchHHHHHHHHH--
Q 010318 143 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETGFEKGGQTREHVMLAKT-- 217 (513)
Q Consensus 143 ~~giTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~---~e~~~~~~~qt~e~l~~~~~-- 217 (513)
.+-.|..+....|..++..+.++|.+|++.+.+.+......++++|+|||.++-. .|..- .....+.+.+...
T Consensus 167 ~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~--~nrl~esl~~f~~l~ 244 (342)
T smart00275 167 SRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDES--TNRMQESLNLFESIC 244 (342)
T ss_pred eeCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCc--chHHHHHHHHHHHHH
Confidence 3445555556668888999999999999999999999999999999999988621 11000 0122233332222
Q ss_pred -----cCCCeEEEEEeeccC
Q 010318 218 -----LGVTKLLLVVNKMDD 232 (513)
Q Consensus 218 -----~~ip~~ivviNK~D~ 232 (513)
.++| +++++||.|+
T Consensus 245 ~~~~~~~~p-iil~~NK~D~ 263 (342)
T smart00275 245 NSRWFANTS-IILFLNKIDL 263 (342)
T ss_pred cCccccCCc-EEEEEecHHh
Confidence 2577 9999999997
No 450
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.0078 Score=59.74 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=42.8
Q ss_pred HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc----------------CCCeEEEEEeeccCCCCCc
Q 010318 174 VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----------------GVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 174 ~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~----------------~ip~~ivviNK~D~~~~~~ 237 (513)
+..|..-+..|+++|+|+|.-.. .+....++.+..+ ..|++|++-||.-+ .|+
T Consensus 289 L~~~AfLl~VcHivivV~d~~~d---------~~lir~L~~Ae~~rP~laifrh~~~~~r~~~p~lVFv~~KA~r--iDf 357 (491)
T KOG4181|consen 289 LGTMAFLLSVCHIVIVVIDGLAD---------EQLIRLLNAAERLRPTLAIFRHCKGYVRDHMPQLVFVRAKAHR--IDF 357 (491)
T ss_pred HHHHHHHHHHhhEEEEEecchhH---------HHHHHHHHHHHhhCcccCccccccccccccCcceEEEeccccc--ccc
Confidence 34444446799999999995432 2444444444332 14678888899877 554
Q ss_pred hHHHHHHHHhhhHhhhhhcc
Q 010318 238 SKERYDEIESKMTPFLKASG 257 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g 257 (513)
.....+++-..+..+++..+
T Consensus 358 ~pr~rerl~~~~~~l~~~S~ 377 (491)
T KOG4181|consen 358 EPRQRERLDKKLAYLYGPSG 377 (491)
T ss_pred ChHHHHHHHHHHHHHhcccC
Confidence 44444455555554444433
No 451
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.01 E-value=0.0027 Score=62.69 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=59.7
Q ss_pred hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCccc
Q 010318 182 SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVK 261 (513)
Q Consensus 182 ~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~ 261 (513)
...|-+|+|+.+..+.|. ..+..+.|-++...|+. .|+++||+|+ .+. + .... ++.......+|+
T Consensus 78 ~n~d~~iiIvs~~~P~~~-----~~~ldR~Lv~ae~~gi~-pvIvlnK~DL--~~~-~-~~~~--~~~~~~y~~~gy--- 142 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFN-----TNLLDRYLVLAEAGGIE-PVIVLNKIDL--LDD-E-EAAV--KELLREYEDIGY--- 142 (301)
T ss_pred cccceEEEEEeccCCCCC-----HHHHHHHHHHHHHcCCc-EEEEEEcccc--Ccc-h-HHHH--HHHHHHHHhCCe---
Confidence 458889999999998762 34566777788888998 6789999999 431 1 1221 444555666665
Q ss_pred CCeeEEEeeccccccccccc
Q 010318 262 KDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 262 ~~~~iipiSa~~g~gi~~l~ 281 (513)
+++.+|+++++|+.++.
T Consensus 143 ---~v~~~s~~~~~~~~~l~ 159 (301)
T COG1162 143 ---PVLFVSAKNGDGLEELA 159 (301)
T ss_pred ---eEEEecCcCcccHHHHH
Confidence 79999999999998864
No 452
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.00 E-value=0.0017 Score=60.09 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=41.5
Q ss_pred eEEEEEeCCC------CcchHHHHHHhhhhcC---EEEEEEECCCCcccccccCCcchHHH------HHHHHHcCCCeEE
Q 010318 160 TRFTILDAPG------HKSYVPNMISGASQAD---IGVLVISARKGEFETGFEKGGQTREH------VMLAKTLGVTKLL 224 (513)
Q Consensus 160 ~~i~liDtPG------h~~f~~~~~~~~~~~D---~~ilVVda~~g~~e~~~~~~~qt~e~------l~~~~~~~ip~~i 224 (513)
..+.++|+|| |..-+++.++.+.+-+ .+++++|+.-- ...++.. +.....+.+| -|
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~--------vD~~KfiSG~lsAlsAMi~lE~P-~I 168 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFL--------VDSTKFISGCLSALSAMISLEVP-HI 168 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchh--------hhHHHHHHHHHHHHHHHHHhcCc-ch
Confidence 4589999999 4455777777765422 46667776531 1233333 3344456899 46
Q ss_pred EEEeeccCC
Q 010318 225 LVVNKMDDH 233 (513)
Q Consensus 225 vviNK~D~~ 233 (513)
=+++|||+.
T Consensus 169 NvlsKMDLl 177 (273)
T KOG1534|consen 169 NVLSKMDLL 177 (273)
T ss_pred hhhhHHHHh
Confidence 799999984
No 453
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.97 E-value=0.0031 Score=58.08 Aligned_cols=65 Identities=25% Similarity=0.360 Sum_probs=49.9
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
..+.+.|+|||+... ......+..+|.+++|+.+..... ....+.+..++..+.+ +.+++||+|.
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~-------~~~~~~~~~l~~~~~~-~~vV~N~~~~ 155 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGL-------HDLERAVELVRHFGIP-VGVVINKYDL 155 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccH-------HHHHHHHHHHHHcCCC-EEEEEeCCCC
Confidence 578899999997533 244556788999999999886432 2566677778888888 7789999997
No 454
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.91 E-value=0.017 Score=63.18 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=60.7
Q ss_pred EEEc-cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCC-cccceeeeEEccC
Q 010318 318 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDILSGFVLSSV 393 (513)
Q Consensus 318 ~~~~-~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~-~~~i~~G~vl~~~ 393 (513)
.+|+ ..+.++.++|..|.|+.|..|.-..+....+|.||++++++|++|..|+-|+|.+.+.. ..++..||+|...
T Consensus 473 ~vf~~~~~~i~G~~V~~G~i~~~~~v~r~~~~~iG~i~slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~l~~~ 550 (590)
T TIGR00491 473 LVFRQSKPAIVGVEVLTGVIRQGYPLMKDDGETVGTVRSMQDKGENVKSASAGQEVAIAIKDVVYGRTIHEGDTLYVD 550 (590)
T ss_pred eeeeCCCCeEEEEEEecCEEecCCeEEecCCEEEEEEchhcccCccccEECCCCEEEEEEeCccccCCCCCCCEEEEe
Confidence 4663 34788999999999999998743223345789999999999999999999999998742 2578999998653
No 455
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.87 E-value=0.00074 Score=68.17 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=42.3
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
++.++++|+|-||+||||+||+|...... ......|+|...-...+ +
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C------------------------------~vg~~pGvT~smqeV~L---d 296 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKAC------------------------------NVGNVPGVTRSMQEVKL---D 296 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccc------------------------------cCCCCccchhhhhheec---c
Confidence 67899999999999999999999544331 11222677665544433 4
Q ss_pred eEEEEEeCCCC
Q 010318 160 TRFTILDAPGH 170 (513)
Q Consensus 160 ~~i~liDtPGh 170 (513)
..|.|+|.||.
T Consensus 297 k~i~llDsPgi 307 (435)
T KOG2484|consen 297 KKIRLLDSPGI 307 (435)
T ss_pred CCceeccCCce
Confidence 78999999994
No 456
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.82 E-value=0.0064 Score=57.39 Aligned_cols=71 Identities=11% Similarity=0.201 Sum_probs=40.4
Q ss_pred CCeEEEEEeCCCCc------chHHHHHHhhhhcCEEEEEEECCCCcccccccCCc-ch----HHHHHHHHHcCCCeEEEE
Q 010318 158 ETTRFTILDAPGHK------SYVPNMISGASQADIGVLVISARKGEFETGFEKGG-QT----REHVMLAKTLGVTKLLLV 226 (513)
Q Consensus 158 ~~~~i~liDtPGh~------~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~-qt----~e~l~~~~~~~ip~~ivv 226 (513)
....+.++|+||+- +-.+..++-+..-|+-+.+|.-.+..+= ..+ +- .-.+.-+..+..|| |=|
T Consensus 95 ~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~yc----s~p~~~iS~lL~sl~tMl~melph-VNv 169 (290)
T KOG1533|consen 95 LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYC----SDPSKFISSLLVSLATMLHMELPH-VNV 169 (290)
T ss_pred ccCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceee----CChHHHHHHHHHHHHHHHhhcccc-hhh
Confidence 45789999999954 4466666766666665555443322210 001 11 11122233457886 579
Q ss_pred EeeccCC
Q 010318 227 VNKMDDH 233 (513)
Q Consensus 227 iNK~D~~ 233 (513)
+.|+|+.
T Consensus 170 lSK~Dl~ 176 (290)
T KOG1533|consen 170 LSKADLL 176 (290)
T ss_pred hhHhHHH
Confidence 9999973
No 457
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.82 E-value=0.0065 Score=63.36 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=26.2
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCc
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQV 109 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i 109 (513)
.--..+|+|+|++++|||||+++|....|..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 3456899999999999999999998776654
No 458
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.82 E-value=0.024 Score=58.32 Aligned_cols=30 Identities=23% Similarity=0.217 Sum_probs=25.0
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhC
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
.....+-|+++|+|-+||||++.++.....
T Consensus 13 RT~GdIYiGVVGPVRTGKSTFIKRFMel~V 42 (492)
T PF09547_consen 13 RTGGDIYIGVVGPVRTGKSTFIKRFMELLV 42 (492)
T ss_pred hcCCceEEEeecCcccCchhHHHHHHHHhc
Confidence 445568999999999999999999976554
No 459
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.78 E-value=0.0062 Score=49.18 Aligned_cols=69 Identities=19% Similarity=0.319 Sum_probs=47.0
Q ss_pred EEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEEE
Q 010318 85 VVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFTI 164 (513)
Q Consensus 85 v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~l 164 (513)
+++.|..|+||||+...|...... .|..+-. +. .+.+
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----------------------------------~g~~v~~----~~----d~ii 38 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----------------------------------RGKRVLL----ID----DYVL 38 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----------------------------------CCCeEEE----EC----CEEE
Confidence 678899999999999988433210 2222211 11 8999
Q ss_pred EeCCCCcchHHH-HHHhhhhcCEEEEEEECCCC
Q 010318 165 LDAPGHKSYVPN-MISGASQADIGVLVISARKG 196 (513)
Q Consensus 165 iDtPGh~~f~~~-~~~~~~~~D~~ilVVda~~g 196 (513)
+|+||....... .......+|.++++++....
T Consensus 39 vD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 39 IDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred EeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 999996554432 24456789999999998765
No 460
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.75 E-value=0.0011 Score=68.84 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=23.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
+...+|++||-||+|||++||+|.+..
T Consensus 312 ~~~vtVG~VGYPNVGKSSTINaLvG~K 338 (562)
T KOG1424|consen 312 KDVVTVGFVGYPNVGKSSTINALVGRK 338 (562)
T ss_pred CceeEEEeecCCCCchhHHHHHHhcCc
Confidence 447999999999999999999996543
No 461
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=96.69 E-value=0.0014 Score=66.16 Aligned_cols=198 Identities=6% Similarity=-0.127 Sum_probs=167.1
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
+-..+.-+-++.++++++++...-.-.+.......+..+....++..-||.+.+..+..+.++.-+++......+...-.
T Consensus 81 n~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~~ft 160 (501)
T KOG0459|consen 81 NAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENKRFT 160 (501)
T ss_pred eEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecceeEE
Confidence 44566677788888888887766555666667777888888899999999999999999999988888888877777766
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
.....-+-+++..++..+.++-..++++-.....-++-||.|++...++..+-.+.....+-.+....++++....+|..
T Consensus 161 iLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~ 240 (501)
T KOG0459|consen 161 ILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYE 240 (501)
T ss_pred eeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcchhhHH
Confidence 77777888999999999999999999999999999999999999889999998888888887677778999998899999
Q ss_pred HHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccc
Q 010318 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMK 278 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~ 278 (513)
+..+.+..-|. .+...+++....+|+-+.|+.+..+..
T Consensus 241 E~~~k~~~fLr-~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 241 ECKEKLQPFLR-KLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred HHHHHHHHHHH-HhcccCCCCceeeecccccccchhhcc
Confidence 99999988887 787777777778899999988876654
No 462
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.67 E-value=0.011 Score=49.17 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=27.3
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG 196 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g 196 (513)
+.+.++|+|+..... ....+..+|.+++++++...
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCHH
Confidence 779999999965433 33667889999999998754
No 463
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.61 E-value=0.021 Score=58.42 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
+.+...+.|--|||||||+++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4567789999999999999999854
No 464
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.41 E-value=0.0087 Score=43.77 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=25.3
Q ss_pred HHHhh-hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-CCCeEEEEEeecc
Q 010318 177 MISGA-SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMD 231 (513)
Q Consensus 177 ~~~~~-~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~-~ip~~ivviNK~D 231 (513)
.+.++ ..++++++++|.++. .|+.++.|..-.-.+-..+ +.| +++|+||+|
T Consensus 6 ai~AL~hL~~~ilfi~D~Se~---CGysie~Q~~L~~~ik~~F~~~P-~i~V~nK~D 58 (58)
T PF06858_consen 6 AITALAHLADAILFIIDPSEQ---CGYSIEEQLSLFKEIKPLFPNKP-VIVVLNKID 58 (58)
T ss_dssp HHHGGGGT-SEEEEEE-TT-T---TSS-HHHHHHHHHHHHHHTTTS--EEEEE--TT
T ss_pred HHHHHHhhcceEEEEEcCCCC---CCCCHHHHHHHHHHHHHHcCCCC-EEEEEeccC
Confidence 44444 478999999999874 2333222222111222234 677 999999998
No 465
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.39 E-value=0.01 Score=54.33 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=22.2
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHH
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
++.+.++|+|..|||||||+.+|+..
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 45678999999999999999999643
No 466
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.38 E-value=0.01 Score=62.91 Aligned_cols=145 Identities=16% Similarity=0.175 Sum_probs=76.1
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
..++...+-++|..++|||.|++.+++.. +++.. .+ ......+++..... -
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~--~~~~~----------~~---------------~~~~~~avn~v~~~--g 471 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRS--MSDNN----------TG---------------TTKPRYAVNSVEVK--G 471 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccc--ccccc----------cc---------------CCCCceeeeeeeec--c
Confidence 34567889999999999999999885421 11100 00 00122222222221 2
Q ss_pred CCeEEEEEeCCCC-cchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeeccCCCC
Q 010318 158 ETTRFTILDAPGH-KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 158 ~~~~i~liDtPGh-~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~D~~~~ 235 (513)
..+.+.+-|.+-. .+++.. .-..||+++++.|.+.... |+ ...+...... ..++| +++|.+|+|+...
T Consensus 472 ~~k~LiL~ei~~~~~~~l~~---ke~~cDv~~~~YDsS~p~s---f~---~~a~v~~~~~~~~~~P-c~~va~K~dlDe~ 541 (625)
T KOG1707|consen 472 QQKYLILREIGEDDQDFLTS---KEAACDVACLVYDSSNPRS---FE---YLAEVYNKYFDLYKIP-CLMVATKADLDEV 541 (625)
T ss_pred ccceEEEeecCccccccccC---ccceeeeEEEecccCCchH---HH---HHHHHHHHhhhccCCc-eEEEeeccccchh
Confidence 2344455555432 111111 1268999999999885421 11 1112221111 15688 8899999998322
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL 272 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~ 272 (513)
.++..-+-..+..++++. +.+++|..
T Consensus 542 ------~Q~~~iqpde~~~~~~i~-----~P~~~S~~ 567 (625)
T KOG1707|consen 542 ------PQRYSIQPDEFCRQLGLP-----PPIHISSK 567 (625)
T ss_pred ------hhccCCChHHHHHhcCCC-----CCeeeccC
Confidence 122222235566666665 45566655
No 467
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.33 E-value=0.009 Score=70.85 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=18.2
Q ss_pred ceeEEEEEecCCCChHHHHhHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQI 102 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~L 102 (513)
..+=..|+|.+++|||||+.+-
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s 131 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS 131 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC
Confidence 4467899999999999998643
No 468
>PRK13695 putative NTPase; Provisional
Probab=96.31 E-value=0.012 Score=53.98 Aligned_cols=21 Identities=24% Similarity=0.162 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q 010318 84 NVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
+|+++|.+++|||||+..+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998754
No 469
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.31 E-value=0.028 Score=50.26 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.1
Q ss_pred cceeEEEEEecCCCChHHHHhHHH
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll 103 (513)
+...+|.|.|+||+|||||+..+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHH
Confidence 346899999999999999998884
No 470
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.28 E-value=0.019 Score=55.42 Aligned_cols=137 Identities=19% Similarity=0.297 Sum_probs=79.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.-..||..+|..|-|||||++.|....-.... .+. ...++......+.+.-.+
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p---------------~~H------------~~~~V~L~~~TyelqEsn 92 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEP---------------STH------------TLPNVKLQANTYELQESN 92 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCC---------------Ccc------------CCCCceeecchhhhhhcC
Confidence 44689999999999999999999533211000 000 012333222222222223
Q ss_pred --eEEEEEeCCCCcc-------------h--------------HHHHHHhh--hhcCEEEEEEECCCCcccccccCCcch
Q 010318 160 --TRFTILDAPGHKS-------------Y--------------VPNMISGA--SQADIGVLVISARKGEFETGFEKGGQT 208 (513)
Q Consensus 160 --~~i~liDtPGh~~-------------f--------------~~~~~~~~--~~~D~~ilVVda~~g~~e~~~~~~~qt 208 (513)
.+++++||.|.-+ | ++.++... +..++++..|..+. ..
T Consensus 93 vrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-----------H~ 161 (406)
T KOG3859|consen 93 VRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-----------HS 161 (406)
T ss_pred eeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-----------cc
Confidence 3689999999532 2 22222222 24678888887663 23
Q ss_pred HHHHHHHH--Hc--CCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCc
Q 010318 209 REHVMLAK--TL--GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 259 (513)
Q Consensus 209 ~e~l~~~~--~~--~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~ 259 (513)
...+.++- .+ ++. +|-+|-|.|. . ++..+...+..+...|.+.|..
T Consensus 162 LKslDLvtmk~LdskVN-IIPvIAKaDt--i--sK~eL~~FK~kimsEL~sngv~ 211 (406)
T KOG3859|consen 162 LKSLDLVTMKKLDSKVN-IIPVIAKADT--I--SKEELKRFKIKIMSELVSNGVQ 211 (406)
T ss_pred hhHHHHHHHHHHhhhhh-hHHHHHHhhh--h--hHHHHHHHHHHHHHHHHhcCce
Confidence 33333322 22 455 7778999998 3 5667777777777777776643
No 471
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.23 E-value=0.091 Score=57.72 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=58.4
Q ss_pred EEEc-cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCc-ccceeeeEEcc
Q 010318 318 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEE-EDILSGFVLSS 392 (513)
Q Consensus 318 ~~~~-~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~-~~i~~G~vl~~ 392 (513)
.+|+ ..+.++.++|..|.|+.|..|.-..+....+|.||+++.++|+++..|+-|+|.+.+... .++..||+|-.
T Consensus 475 ~vf~~~~~~IaGc~V~~G~i~~~~~v~r~~g~~iG~i~Slk~~k~~V~ev~~G~Ecgi~i~~~~~g~~~~~gD~i~~ 551 (586)
T PRK04004 475 YVFRQSDPAIVGVEVLGGTIKPGVPLIKEDGKRVGTIKQIQDQGENVKEAKAGMEVAISIDGPTVGRQIKEGDILYV 551 (586)
T ss_pred eeEecCCCeEEEEEEEeCEEecCCEEEEECCEEEEEEehhhccCCcccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 5663 347888999999999999985421233447899999999999999999999999986421 46888888754
No 472
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.20 E-value=0.032 Score=56.55 Aligned_cols=135 Identities=15% Similarity=0.187 Sum_probs=83.4
Q ss_pred hcCcEEEeeeEEEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCc---ccccccCCcchHHHHHHHHHc-
Q 010318 143 IKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETGFEKGGQTREHVMLAKTL- 218 (513)
Q Consensus 143 ~~giTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~---~e~~~~~~~qt~e~l~~~~~~- 218 (513)
.|-.|.-+....|...+..+.++|++|++.=.+.++.....++++|+||+-++-. +|.. ......|.+.+....
T Consensus 178 ~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~--~~NRM~eS~~LF~sI~ 255 (354)
T KOG0082|consen 178 SRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDE--TTNRMHESLKLFESIC 255 (354)
T ss_pred hccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhccccc--chhHHHHHHHHHHHHh
Confidence 5556777777889999999999999999999999999999999999999976521 1100 012233444443332
Q ss_pred ------CCCeEEEEEeeccCCCC------------Cch-HHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccc
Q 010318 219 ------GVTKLLLVVNKMDDHTV------------NWS-KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKT 279 (513)
Q Consensus 219 ------~ip~~ivviNK~D~~~~------------~~~-~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~ 279 (513)
+.+ +|+++||+|+... +|. ...+++...-+...+.++.....+.+-...+.|..-.|+..
T Consensus 256 n~~~F~~ts-iiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~ 334 (354)
T KOG0082|consen 256 NNKWFANTS-IILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQF 334 (354)
T ss_pred cCcccccCc-EEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHH
Confidence 456 9999999997211 000 02333444444444444433221223334456766677765
Q ss_pred c
Q 010318 280 R 280 (513)
Q Consensus 280 l 280 (513)
.
T Consensus 335 v 335 (354)
T KOG0082|consen 335 V 335 (354)
T ss_pred H
Confidence 4
No 473
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.18 E-value=0.0019 Score=64.96 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=24.1
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHH
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
.++.+.|+++|-||+|||+++|.|...
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~K 330 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKK 330 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhc
Confidence 578899999999999999999999543
No 474
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=96.15 E-value=0.028 Score=56.87 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=50.3
Q ss_pred CeEEEEEeCCCCcchHHHHH--------HhhhhcCEEEEEEECCCCcccccccCCcchHH-HHH-HHHHcCCCeEEEEEe
Q 010318 159 TTRFTILDAPGHKSYVPNMI--------SGASQADIGVLVISARKGEFETGFEKGGQTRE-HVM-LAKTLGVTKLLLVVN 228 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~--------~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e-~l~-~~~~~~ip~~ivviN 228 (513)
.....+|-|-|...-.+-.. .....-|.+|-||||.+.. .... ... .-.+....- +|++|
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~---------~~~~~~~~~~~~Qia~AD-~ivlN 153 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFL---------EGLDAIAELAEDQLAFAD-VIVLN 153 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhh---------hhHHHHHHHHHHHHHhCc-EEEEe
Confidence 35588999999655422221 2223568899999999753 2121 111 112223332 57999
Q ss_pred eccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeec
Q 010318 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISG 271 (513)
Q Consensus 229 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa 271 (513)
|.|+ ++ .+..+.+. ..+.+++ +..+++.+|.
T Consensus 154 K~Dl--v~--~~~l~~l~----~~l~~ln----p~A~i~~~~~ 184 (323)
T COG0523 154 KTDL--VD--AEELEALE----ARLRKLN----PRARIIETSY 184 (323)
T ss_pred cccC--CC--HHHHHHHH----HHHHHhC----CCCeEEEccc
Confidence 9999 43 12233333 3344332 3568888876
No 475
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.06 E-value=0.016 Score=53.28 Aligned_cols=40 Identities=25% Similarity=0.149 Sum_probs=29.2
Q ss_pred CEEEEEEECCCCcccccccCCcchHHHHHH--HHHcCCCeEEEEEeeccC
Q 010318 185 DIGVLVISARKGEFETGFEKGGQTREHVML--AKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 185 D~~ilVVda~~g~~e~~~~~~~qt~e~l~~--~~~~~ip~~ivviNK~D~ 232 (513)
|++++|+||..+.. ....+.... +...+.| +|+++||+|+
T Consensus 1 DvVl~VvDar~p~~-------~~~~~i~~~~~l~~~~kp-~IlVlNK~DL 42 (172)
T cd04178 1 DVILEVLDARDPLG-------CRCPQVEEAVLQAGGNKK-LVLVLNKIDL 42 (172)
T ss_pred CEEEEEEECCCCCC-------CCCHHHHHHHHhccCCCC-EEEEEehhhc
Confidence 89999999998632 344444444 3345677 8899999999
No 476
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.04 E-value=0.017 Score=58.99 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=23.3
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
.....++.++|++|||||||..-|.+..
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~ 97 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKL 97 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHH
Confidence 4567899999999999999998885543
No 477
>PRK14845 translation initiation factor IF-2; Provisional
Probab=96.00 E-value=0.12 Score=60.07 Aligned_cols=75 Identities=21% Similarity=0.220 Sum_probs=59.6
Q ss_pred EEEc-cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCC-cccceeeeEEcc
Q 010318 318 DKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDILSGFVLSS 392 (513)
Q Consensus 318 ~~~~-~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~-~~~i~~G~vl~~ 392 (513)
.+|+ ..+.++.++|..|+|+.|..|.-..+....+|.||+.++++|++|..|+-|+|.+.+.. ..++..||+|..
T Consensus 931 ~vF~~~~~~IaG~~V~~G~i~~~~~l~r~~~~~iG~i~Slk~~k~~V~ev~~G~ecgI~i~~~~~gr~~~~gD~l~~ 1007 (1049)
T PRK14845 931 CIFRRSNPAIVGVEVLEGTLRVGVTLIKEDGMKVGTVRSIKDRGENVKEAKAGKAVAIAIEGAILGRHVDEGETLYV 1007 (1049)
T ss_pred eEEeCCCCeEEEEEEeeCEEecCcEEEecCCEEEEEEchHhccCccccEeCCCCEEEEEEecccccCCCCCCCEEEE
Confidence 5663 34788999999999999987744223345789999999999999999999999998643 246888888865
No 478
>PRK01889 GTPase RsgA; Reviewed
Probab=95.73 E-value=0.0086 Score=61.65 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
.+++++|.+|+|||||++.|+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 57999999999999999999654
No 479
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=95.71 E-value=0.17 Score=40.73 Aligned_cols=75 Identities=16% Similarity=0.297 Sum_probs=50.7
Q ss_pred eEEEEEEEEecccc-------c-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEc
Q 010318 401 TEFIAQLQILELLD-------N-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN 472 (513)
Q Consensus 401 ~~f~a~i~~~~~l~-------~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~ 472 (513)
.+++.+.++|+.+- . .+|+.|-..++++++..+.|+|.++. ++ .+++.|.
T Consensus 2 ~~l~i~~~Ll~r~vg~~~~~~kv~~i~~~E~LmlnIGsatt~G~V~~~k--------------------~d--~~~v~L~ 59 (88)
T PF09173_consen 2 TELEIEYHLLERVVGVKEKEAKVEPIKKGEVLMLNIGSATTGGVVTSVK--------------------KD--MAEVELK 59 (88)
T ss_dssp EEEEEEEEE-SSCSSSSS-CCS-----TTEEEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEE
T ss_pred EEEEEEEEEehhhhCccccceecccCCCCCEEEEEEccccccEEEEEEE--------------------CC--EEEEEec
Confidence 45666666665431 1 67899999999999999999998763 11 4778889
Q ss_pred ceEEeeecccccccceEEEEe--CC--eEEEEEEE
Q 010318 473 NSICTEKFADFAQLGRFTLRT--EG--KTVAVGKV 503 (513)
Q Consensus 473 ~pi~~e~~~~~~~lgrfilr~--~g--~tva~G~V 503 (513)
+|+|.+.. .|.+|-+ ++ |.+|+|.|
T Consensus 60 ~Pvc~~~g------~rvaiSRri~~rWRLIG~G~I 88 (88)
T PF09173_consen 60 KPVCAEKG------ERVAISRRIGNRWRLIGWGII 88 (88)
T ss_dssp EEEE-STT------SEEEEEEEETTSEEEEEEEEE
T ss_pred CCeEcCcC------CeeeeehhccCeEEEEEEEeC
Confidence 99999876 3666633 33 89999986
No 480
>PHA00729 NTP-binding motif containing protein
Probab=95.66 E-value=0.012 Score=56.10 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=22.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
...+|+|.|.||+|||||..+|....
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999996543
No 481
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=95.55 E-value=0.15 Score=49.99 Aligned_cols=27 Identities=30% Similarity=0.246 Sum_probs=22.9
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHH
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
...+.+.-.|.|--|||||||+|.++.
T Consensus 53 ~~~rIPvtIITGyLGaGKtTLLn~Il~ 79 (391)
T KOG2743|consen 53 LGARIPVTIITGYLGAGKTTLLNYILT 79 (391)
T ss_pred CCCccceEEEEecccCChHHHHHHHHc
Confidence 456777778999999999999999964
No 482
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.50 E-value=0.035 Score=50.28 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
..++++|..|+|||||+.+|..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999953
No 483
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.49 E-value=0.23 Score=54.19 Aligned_cols=60 Identities=22% Similarity=0.301 Sum_probs=49.1
Q ss_pred EEccCCeEE-EEEEEeeeecCCCEEEEecCC--cEEEEEEEEECCeeecccCCCCeEEEEecc
Q 010318 319 KFKDMGTVV-MGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSG 378 (513)
Q Consensus 319 ~~~~~G~vv-~g~v~sG~l~~gd~v~~~p~~--~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~ 378 (513)
+|..++.++ ...|..|.|+.|..|.+..-. .-.+|.||+++|++|+.|.-||-|+|.|.+
T Consensus 945 ifN~RdPiv~GV~V~~GilkiGTPiCv~~r~~~~lG~v~Sie~Nh~~vd~akkGqeVaiKie~ 1007 (1064)
T KOG1144|consen 945 IFNKRDPIVLGVDVEEGILKIGTPICVPKREFIDLGRVASIENNHKPVDYAKKGQEVAIKIEA 1007 (1064)
T ss_pred hccCCCCeEEEEEeecCeeecCCceEEeccceeeeeeeeeecccCcccchhhcCCeEEEEEec
Confidence 456677764 458999999999999774322 357999999999999999999999998764
No 484
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.36 E-value=0.017 Score=43.26 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=19.0
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q 010318 84 NVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
...|.|+.++|||||++++.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999954
No 485
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.33 E-value=0.017 Score=49.19 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHhHHHHHhC
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
.|+|.|.++|||||+...|....|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 489999999999999999965544
No 486
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.28 E-value=0.038 Score=57.73 Aligned_cols=87 Identities=20% Similarity=0.311 Sum_probs=60.0
Q ss_pred hcCcEEEeeeEEEEe-CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCC---cccccccCCcchHHHHHHHHHc
Q 010318 143 IKGKTVEVGRAHFET-ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG---EFETGFEKGGQTREHVMLAKTL 218 (513)
Q Consensus 143 ~~giTi~~~~~~~~~-~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g---~~e~~~~~~~qt~e~l~~~~~~ 218 (513)
.+..|..+....|.. .+..+.|+|+.|++.-.+.++......+++|+||+..+= ..|.. ......+.+.+....
T Consensus 218 ~r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~--~~nrl~esl~lF~~i 295 (389)
T PF00503_consen 218 CRVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDP--NTNRLHESLNLFESI 295 (389)
T ss_dssp S----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSST--TSBHHHHHHHHHHHH
T ss_pred ecCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccc--hHHHHHHHHHHHHHH
Confidence 344555666677888 899999999999999999999999999999999996541 11110 012345555554432
Q ss_pred -------CCCeEEEEEeeccC
Q 010318 219 -------GVTKLLLVVNKMDD 232 (513)
Q Consensus 219 -------~ip~~ivviNK~D~ 232 (513)
+.| +||++||+|+
T Consensus 296 ~~~~~~~~~~-iil~lnK~D~ 315 (389)
T PF00503_consen 296 CNNPWFKNTP-IILFLNKIDL 315 (389)
T ss_dssp HTSGGGTTSE-EEEEEE-HHH
T ss_pred HhCcccccCc-eEEeeecHHH
Confidence 466 9999999997
No 487
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.26 E-value=0.051 Score=49.54 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=49.2
Q ss_pred CCeEEEEEeCCCCcchHHHHHHh--hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 158 ETTRFTILDAPGHKSYVPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~--~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
.++.+.|+|||+.-. ...... +..+|.+|+|+.+..... ..+.+.+..++..+.+.+-+++|+.+.
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~-------~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVAL-------DDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhH-------HHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 578899999999643 222222 257899999998775432 467788888899999866789999986
No 488
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.03 E-value=0.12 Score=52.64 Aligned_cols=79 Identities=29% Similarity=0.380 Sum_probs=50.8
Q ss_pred EEeCCCC-cchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-HHcCCCeEEEEEeeccCCCCCchHHH
Q 010318 164 ILDAPGH-KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLLLVVNKMDDHTVNWSKER 241 (513)
Q Consensus 164 liDtPGh-~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~-~~~~ip~~ivviNK~D~~~~~~~~~~ 241 (513)
-.|-+++ ..|.+....-+..+|++|-|+||.++. +....+.=... .+.|-+++|+++||+|+ +. .
T Consensus 126 ~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPl-------gtR~~~vE~~V~~~~gnKkLILVLNK~DL--VP--r-- 192 (435)
T KOG2484|consen 126 ALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPL-------GTRCPEVEEAVLQAHGNKKLILVLNKIDL--VP--R-- 192 (435)
T ss_pred hccchhhHHHHHHHHHHHHhhhheEEEeeeccCCC-------CCCChhHHHHHHhccCCceEEEEeehhcc--CC--H--
Confidence 3455554 357788888889999999999999974 22223322233 34454679999999999 42 2
Q ss_pred HHHHHhhhHhhhhhcc
Q 010318 242 YDEIESKMTPFLKASG 257 (513)
Q Consensus 242 ~~~i~~~l~~~l~~~g 257 (513)
+..++-..+|++.+
T Consensus 193 --Ev~e~Wl~YLr~~~ 206 (435)
T KOG2484|consen 193 --EVVEKWLVYLRREG 206 (435)
T ss_pred --HHHHHHHHHHHhhC
Confidence 33444445565543
No 489
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=0.046 Score=56.72 Aligned_cols=143 Identities=16% Similarity=0.215 Sum_probs=75.1
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHH------------hCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcC
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFL------------SGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKG 145 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~------------~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~g 145 (513)
..+++..|+++|-.|+||||-+..+.|= |..+..+.++.++.++.. ++.+++..-+--+.|
T Consensus 374 ~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~r-------l~~l~~~~v~lfekG 446 (587)
T KOG0781|consen 374 RRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVER-------LSALHGTMVELFEKG 446 (587)
T ss_pred hcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHH-------HHHhccchhHHHhhh
Confidence 3568899999999999999988877432 222333333333333322 111222111111122
Q ss_pred cEEEeee------EEEEeCCeEEEEEeCCCCcchHHHHHHh------hhhcCEEEEEEECCCCcccccccCCcchHHHHH
Q 010318 146 KTVEVGR------AHFETETTRFTILDAPGHKSYVPNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVM 213 (513)
Q Consensus 146 iTi~~~~------~~~~~~~~~i~liDtPGh~~f~~~~~~~------~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~ 213 (513)
.--+.+. .+-...++.+.||||+|...--...++. +..+|.+++|=.|--|-- .-.|.++.-.
T Consensus 447 Ygkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~d-----sv~q~~~fn~ 521 (587)
T KOG0781|consen 447 YGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGND-----SVDQLKKFNR 521 (587)
T ss_pred cCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcH-----HHHHHHHHHH
Confidence 2111110 0112357889999999954333333332 357999999977766521 0123333323
Q ss_pred HHHHcCCCeE--EEEEeeccC
Q 010318 214 LAKTLGVTKL--LLVVNKMDD 232 (513)
Q Consensus 214 ~~~~~~ip~~--ivviNK~D~ 232 (513)
.+.....|+. -++++|+|.
T Consensus 522 al~~~~~~r~id~~~ltk~dt 542 (587)
T KOG0781|consen 522 ALADHSTPRLIDGILLTKFDT 542 (587)
T ss_pred HHhcCCCccccceEEEEeccc
Confidence 3333332332 258999998
No 490
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.97 E-value=0.15 Score=47.08 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=19.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll 103 (513)
+--.++++|+.|+|||||++.|.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~ 46 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILA 46 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHH
Confidence 34579999999999999999883
No 491
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.90 E-value=0.069 Score=54.03 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.1
Q ss_pred eeEEEEEecCCCChHHHHhHHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
..+|.|.|.+|||||||+++|+..
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999643
No 492
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.85 E-value=0.039 Score=64.17 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=40.1
Q ss_pred CCeEEEEEeCCC----Cc--c---------hHHH--HHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHH--
Q 010318 158 ETTRFTILDAPG----HK--S---------YVPN--MISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKT-- 217 (513)
Q Consensus 158 ~~~~i~liDtPG----h~--~---------f~~~--~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~-e~l~~~~~-- 217 (513)
-+..-.+|||.| |. + |+.. ..+..+--|++|+-+|+.+-.. ..++.+ .|...++.
T Consensus 172 f~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~-----~~~~~~~~~~~~LR~RL 246 (1188)
T COG3523 172 FTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLT-----ADPAEREALARTLRARL 246 (1188)
T ss_pred cccceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcC-----CCHHHHHHHHHHHHHHH
Confidence 345678999999 21 1 1111 1122346799999999876321 112333 22222222
Q ss_pred --------cCCCeEEEEEeeccCC
Q 010318 218 --------LGVTKLLLVVNKMDDH 233 (513)
Q Consensus 218 --------~~ip~~ivviNK~D~~ 233 (513)
..+| +.|++||+|+.
T Consensus 247 ~El~~tL~~~~P-VYl~lTk~Dll 269 (1188)
T COG3523 247 QELRETLHARLP-VYLVLTKADLL 269 (1188)
T ss_pred HHHHHhhccCCc-eEEEEeccccc
Confidence 2578 88999999993
No 493
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.75 E-value=0.03 Score=49.57 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
+.|+|+|+.|+|||||+..|+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999954
No 494
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.71 E-value=0.024 Score=43.51 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=18.0
Q ss_pred EEEEEecCCCChHHHHhHHH
Q 010318 84 NVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll 103 (513)
.|++.|.+++||||+.++|.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~ 20 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLA 20 (69)
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999983
No 495
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.65 E-value=0.049 Score=53.73 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
...+|.|.|.+||||||++++|+.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~ 149 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLE 149 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCccccchHHHHHhh
Confidence 368999999999999999999964
No 496
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.59 E-value=0.028 Score=51.80 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
+--.++++|+.|+|||||++.++..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4467999999999999999988543
No 497
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.58 E-value=0.053 Score=49.00 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
...++|+|..|||||||+.+|+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 46789999999999999999954
No 498
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.52 E-value=0.036 Score=48.67 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.3
Q ss_pred EEEEEecCCCChHHHHhHHHHHhC
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
.|.++|.++||||||+..|....+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 378999999999999999965544
No 499
>PRK07261 topology modulation protein; Provisional
Probab=94.46 E-value=0.035 Score=50.91 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHhHHHHH
Q 010318 84 NVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
+|+|+|.+|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999988433
No 500
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.44 E-value=0.026 Score=54.11 Aligned_cols=21 Identities=33% Similarity=0.248 Sum_probs=18.6
Q ss_pred eEEEEEecCCCChHHHHhHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll 103 (513)
=-|+|+|+.|+|||||++.+.
T Consensus 30 EfvsilGpSGcGKSTLLriiA 50 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIA 50 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999873
Done!