Query 010318
Match_columns 513
No_of_seqs 424 out of 3420
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 04:11:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j2k_7 ERF3, eukaryotic polype 100.0 1.4E-82 4.9E-87 668.6 52.1 425 78-507 13-438 (439)
2 1r5b_A Eukaryotic peptide chai 100.0 1.8E-78 6.2E-83 642.2 28.6 425 79-507 40-466 (467)
3 1f60_A Elongation factor EEF1A 100.0 1.7E-74 5.8E-79 610.4 44.2 423 79-509 4-442 (458)
4 1jny_A EF-1-alpha, elongation 100.0 9.6E-74 3.3E-78 601.7 44.2 426 79-509 3-430 (435)
5 3izq_1 HBS1P, elongation facto 100.0 7.4E-75 2.5E-79 630.8 36.6 423 79-507 164-610 (611)
6 3p26_A Elongation factor 1 alp 100.0 6.7E-74 2.3E-78 610.6 42.1 424 79-508 30-477 (483)
7 3mca_A HBS1, elongation factor 100.0 1.4E-73 4.7E-78 619.3 32.5 416 78-507 173-592 (592)
8 1zun_B Sulfate adenylate trans 100.0 4E-68 1.4E-72 559.0 43.2 408 79-505 21-434 (434)
9 1d2e_A Elongation factor TU (E 100.0 5.5E-61 1.9E-65 499.1 38.9 378 80-509 1-388 (397)
10 2c78_A Elongation factor TU-A; 100.0 1.4E-60 4.8E-65 497.5 37.6 384 79-508 8-405 (405)
11 3avx_A Elongation factor TS, e 100.0 1.5E-56 5.2E-61 500.9 36.7 380 78-510 292-680 (1289)
12 1wb1_A Translation elongation 100.0 4.6E-58 1.6E-62 487.2 16.9 370 78-508 15-395 (482)
13 2elf_A Protein translation elo 100.0 1.3E-54 4.6E-59 445.4 33.1 336 84-504 23-370 (370)
14 1kk1_A EIF2gamma; initiation o 100.0 9.1E-53 3.1E-57 439.3 38.6 343 79-504 7-409 (410)
15 1s0u_A EIF-2-gamma, translatio 100.0 4.5E-53 1.5E-57 441.2 34.9 343 79-504 5-407 (408)
16 3sjy_A Translation initiation 100.0 1.1E-49 3.9E-54 414.8 36.1 355 79-504 5-402 (403)
17 3e1y_E Eukaryotic peptide chai 100.0 1.4E-41 4.8E-46 319.7 17.4 199 308-509 3-202 (204)
18 3vqt_A RF-3, peptide chain rel 100.0 5.4E-38 1.8E-42 337.2 25.0 282 79-395 28-401 (548)
19 2ywe_A GTP-binding protein LEP 100.0 1E-36 3.5E-41 328.2 26.5 268 80-396 4-282 (600)
20 3cb4_D GTP-binding protein LEP 100.0 1E-35 3.4E-40 321.2 27.1 268 80-396 2-280 (599)
21 4fn5_A EF-G 1, elongation fact 100.0 1.6E-35 5.3E-40 328.3 19.9 277 80-395 11-405 (709)
22 3j25_A Tetracycline resistance 100.0 1.2E-37 4.1E-42 340.9 2.2 274 81-395 1-331 (638)
23 3tr5_A RF-3, peptide chain rel 100.0 1.6E-33 5.3E-38 301.0 24.0 280 80-394 11-382 (528)
24 3izy_P Translation initiation 100.0 2.6E-35 8.8E-40 313.5 4.7 255 81-396 3-261 (537)
25 2rdo_7 EF-G, elongation factor 100.0 3.8E-32 1.3E-36 300.0 29.2 274 79-395 7-402 (704)
26 1zo1_I IF2, translation initia 100.0 2.2E-34 7.6E-39 303.9 8.7 248 80-394 2-258 (501)
27 2h5e_A Peptide chain release f 100.0 1.7E-32 6E-37 293.2 23.2 279 80-394 11-383 (529)
28 1dar_A EF-G, elongation factor 100.0 3.1E-31 1.1E-35 292.4 28.4 275 79-396 9-395 (691)
29 1g7s_A Translation initiation 100.0 2.8E-32 9.7E-37 294.6 18.3 262 80-395 3-329 (594)
30 2xex_A Elongation factor G; GT 100.0 2E-30 6.8E-35 286.1 25.8 274 79-395 7-394 (693)
31 2dy1_A Elongation factor G; tr 100.0 1.5E-30 5E-35 286.1 24.1 275 80-396 7-368 (665)
32 1n0u_A EF-2, elongation factor 100.0 1.6E-27 5.4E-32 268.0 23.4 290 78-394 15-473 (842)
33 2lkc_A Translation initiation 99.8 8.6E-21 3E-25 173.1 9.2 158 80-282 6-163 (178)
34 2hjg_A GTP-binding protein ENG 99.8 2.9E-20 1E-24 195.0 12.1 158 80-282 173-341 (436)
35 3iev_A GTP-binding protein ERA 99.8 2.1E-19 7.1E-24 179.9 15.7 156 79-282 7-174 (308)
36 4dcu_A GTP-binding protein ENG 99.8 1.1E-19 3.9E-24 191.6 12.9 159 79-282 192-361 (456)
37 4dhe_A Probable GTP-binding pr 99.8 1.6E-19 5.5E-24 171.4 12.5 161 79-282 26-203 (223)
38 1wf3_A GTP-binding protein; GT 99.8 5.4E-19 1.8E-23 176.1 16.5 151 80-282 5-165 (301)
39 2dyk_A GTP-binding protein; GT 99.8 1.1E-18 3.7E-23 156.2 14.8 145 83-281 2-153 (161)
40 3i8s_A Ferrous iron transport 99.8 3.5E-19 1.2E-23 175.3 10.2 148 81-282 2-161 (274)
41 3iby_A Ferrous iron transport 99.8 2.8E-19 9.5E-24 174.1 8.3 146 83-282 2-159 (256)
42 2hxs_A RAB-26, RAS-related pro 99.8 5.1E-18 1.7E-22 154.6 15.1 153 80-282 4-165 (178)
43 1ega_A Protein (GTP-binding pr 99.8 6.5E-19 2.2E-23 175.6 10.0 153 80-282 6-167 (301)
44 3a1s_A Iron(II) transport prot 99.8 7.4E-19 2.5E-23 171.4 9.5 149 80-282 3-159 (258)
45 1mky_A Probable GTP-binding pr 99.8 7E-18 2.4E-22 177.1 17.5 147 83-282 2-158 (439)
46 3k53_A Ferrous iron transport 99.8 6.7E-19 2.3E-23 172.9 8.4 148 81-282 2-158 (271)
47 2fg5_A RAB-22B, RAS-related pr 99.8 6.2E-18 2.1E-22 156.8 14.4 154 80-281 21-177 (192)
48 3clv_A RAB5 protein, putative; 99.8 4.5E-18 1.5E-22 158.0 13.2 103 160-282 93-196 (208)
49 3pqc_A Probable GTP-binding pr 99.8 4.4E-18 1.5E-22 157.3 12.7 153 80-282 21-186 (195)
50 1wms_A RAB-9, RAB9, RAS-relate 99.8 1E-17 3.6E-22 152.4 15.0 154 79-282 4-166 (177)
51 1svi_A GTP-binding protein YSX 99.8 6.2E-18 2.1E-22 156.7 13.3 155 79-282 20-187 (195)
52 2g6b_A RAS-related protein RAB 99.7 9.8E-18 3.4E-22 153.0 14.2 154 79-282 7-166 (180)
53 2bme_A RAB4A, RAS-related prot 99.7 9.4E-18 3.2E-22 154.1 14.1 153 80-282 8-165 (186)
54 2h57_A ADP-ribosylation factor 99.7 2.3E-18 7.9E-23 159.2 10.0 156 79-282 18-179 (190)
55 1kao_A RAP2A; GTP-binding prot 99.7 4.2E-18 1.4E-22 152.8 11.4 150 81-282 2-158 (167)
56 2p5s_A RAS and EF-hand domain 99.7 6.8E-19 2.3E-23 164.2 6.2 162 79-282 25-189 (199)
57 4bas_A ADP-ribosylation factor 99.7 9.4E-18 3.2E-22 155.8 13.9 156 78-282 13-181 (199)
58 3tw8_B RAS-related protein RAB 99.7 5.6E-18 1.9E-22 154.5 12.1 154 79-282 6-163 (181)
59 1g16_A RAS-related protein SEC 99.7 5E-18 1.7E-22 153.2 11.6 151 81-282 2-157 (170)
60 1upt_A ARL1, ADP-ribosylation 99.7 8E-18 2.8E-22 152.1 13.0 152 80-282 5-161 (171)
61 3tkl_A RAS-related protein RAB 99.7 6.8E-18 2.3E-22 156.4 12.7 154 79-282 13-171 (196)
62 2wji_A Ferrous iron transport 99.7 3.9E-18 1.4E-22 154.2 10.7 148 81-282 2-157 (165)
63 1z0f_A RAB14, member RAS oncog 99.7 3E-18 1E-22 156.0 9.8 156 79-282 12-170 (179)
64 2efe_B Small GTP-binding prote 99.7 9.8E-18 3.4E-22 153.1 13.3 155 79-281 9-166 (181)
65 4dsu_A GTPase KRAS, isoform 2B 99.7 3.8E-18 1.3E-22 156.9 10.6 151 80-282 2-158 (189)
66 1r2q_A RAS-related protein RAB 99.7 1.4E-17 4.9E-22 150.0 14.1 154 80-281 4-160 (170)
67 2il1_A RAB12; G-protein, GDP, 99.7 1E-17 3.4E-22 155.5 13.3 155 79-282 23-182 (192)
68 2hjg_A GTP-binding protein ENG 99.7 3.5E-18 1.2E-22 179.2 11.2 147 82-282 3-157 (436)
69 2gf9_A RAS-related protein RAB 99.7 8.2E-18 2.8E-22 155.3 12.5 155 79-282 19-177 (189)
70 1zd9_A ADP-ribosylation factor 99.7 7.4E-18 2.5E-22 155.7 12.0 154 79-281 19-176 (188)
71 1zj6_A ADP-ribosylation factor 99.7 7.3E-18 2.5E-22 155.4 11.8 154 79-282 13-170 (187)
72 2oil_A CATX-8, RAS-related pro 99.7 8.6E-18 2.9E-22 155.7 12.1 156 79-282 22-180 (193)
73 3cph_A RAS-related protein SEC 99.7 9E-18 3.1E-22 157.8 12.3 152 80-282 18-174 (213)
74 2fu5_C RAS-related protein RAB 99.7 6.5E-18 2.2E-22 154.9 11.0 152 80-282 6-163 (183)
75 1ek0_A Protein (GTP-binding pr 99.7 1.9E-17 6.6E-22 149.1 13.9 156 81-281 2-160 (170)
76 2ce2_X GTPase HRAS; signaling 99.7 2.6E-17 8.9E-22 147.3 14.6 150 81-282 2-157 (166)
77 2y8e_A RAB-protein 6, GH09086P 99.7 1.2E-17 4.1E-22 151.9 12.5 153 79-281 11-168 (179)
78 3t1o_A Gliding protein MGLA; G 99.7 4.9E-18 1.7E-22 157.2 10.1 160 79-282 11-184 (198)
79 3bc1_A RAS-related protein RAB 99.7 3E-17 1E-21 151.3 15.3 152 80-282 9-177 (195)
80 1x3s_A RAS-related protein RAB 99.7 9.1E-18 3.1E-22 155.3 11.7 155 79-282 12-170 (195)
81 1r8s_A ADP-ribosylation factor 99.7 3.7E-17 1.3E-21 146.7 15.4 150 83-282 1-154 (164)
82 3qq5_A Small GTP-binding prote 99.7 2.9E-18 1E-22 177.9 9.0 149 80-282 32-188 (423)
83 1mky_A Probable GTP-binding pr 99.7 1E-17 3.5E-22 175.8 13.2 158 80-282 178-347 (439)
84 1z0j_A RAB-22, RAS-related pro 99.7 1E-17 3.5E-22 151.1 11.5 154 80-281 4-160 (170)
85 2hup_A RAS-related protein RAB 99.7 4E-17 1.4E-21 152.7 15.7 155 79-282 26-185 (201)
86 2nzj_A GTP-binding protein REM 99.7 1.6E-17 5.3E-22 150.8 12.3 152 81-282 3-161 (175)
87 1zbd_A Rabphilin-3A; G protein 99.7 3.4E-17 1.2E-21 152.9 14.7 153 81-282 7-163 (203)
88 1vg8_A RAS-related protein RAB 99.7 1.7E-17 5.9E-22 155.1 12.6 154 79-282 5-167 (207)
89 1u8z_A RAS-related protein RAL 99.7 2.1E-17 7.1E-22 148.4 12.7 152 80-282 2-159 (168)
90 2fh5_B SR-beta, signal recogni 99.7 2.7E-17 9.3E-22 155.0 14.0 156 79-281 4-207 (214)
91 1ksh_A ARF-like protein 2; sma 99.7 7.1E-18 2.4E-22 155.2 9.7 153 80-282 16-172 (186)
92 3llu_A RAS-related GTP-binding 99.7 3.2E-17 1.1E-21 152.6 14.1 163 77-281 15-188 (196)
93 2ew1_A RAS-related protein RAB 99.7 2.5E-17 8.5E-22 154.3 13.3 153 79-282 23-181 (201)
94 1c1y_A RAS-related protein RAP 99.7 2E-17 6.7E-22 148.8 12.0 154 81-282 2-159 (167)
95 1mh1_A RAC1; GTP-binding, GTPa 99.7 1.7E-17 5.7E-22 152.2 11.5 156 80-282 3-172 (186)
96 2xtp_A GTPase IMAP family memb 99.7 7.3E-18 2.5E-22 164.3 9.5 161 79-282 19-200 (260)
97 1z08_A RAS-related protein RAB 99.7 1.6E-17 5.5E-22 149.9 11.2 153 80-282 4-161 (170)
98 3dz8_A RAS-related protein RAB 99.7 1.4E-17 4.7E-22 154.2 10.9 156 79-282 20-178 (191)
99 4gzl_A RAS-related C3 botulinu 99.7 2.1E-17 7.3E-22 154.9 12.3 156 79-281 27-196 (204)
100 2b6h_A ADP-ribosylation factor 99.7 5E-17 1.7E-21 150.9 14.4 154 79-282 26-183 (192)
101 2h17_A ADP-ribosylation factor 99.7 1.4E-17 4.7E-22 152.8 10.4 154 78-281 17-174 (181)
102 1z2a_A RAS-related protein RAB 99.7 3.1E-17 1E-21 147.6 12.2 153 80-282 3-159 (168)
103 2gf0_A GTP-binding protein DI- 99.7 5.5E-17 1.9E-21 150.6 14.3 153 80-282 6-163 (199)
104 2a5j_A RAS-related protein RAB 99.7 2.4E-17 8.2E-22 152.6 11.7 153 79-282 18-176 (191)
105 1m2o_B GTP-binding protein SAR 99.7 6.6E-17 2.3E-21 149.8 14.7 153 80-281 21-183 (190)
106 2erx_A GTP-binding protein DI- 99.7 1E-16 3.5E-21 144.6 15.6 151 81-281 2-158 (172)
107 1ky3_A GTP-binding protein YPT 99.7 3.4E-17 1.1E-21 149.4 12.3 154 79-282 5-170 (182)
108 1fzq_A ADP-ribosylation factor 99.7 1E-16 3.5E-21 147.3 15.5 152 80-281 14-169 (181)
109 2fn4_A P23, RAS-related protei 99.7 4.3E-17 1.5E-21 148.5 12.7 152 79-282 6-164 (181)
110 3con_A GTPase NRAS; structural 99.7 7.5E-17 2.6E-21 148.8 14.3 153 78-282 17-175 (190)
111 2gj8_A MNME, tRNA modification 99.7 3.5E-17 1.2E-21 149.2 11.9 145 81-282 3-158 (172)
112 3b1v_A Ferrous iron uptake tra 99.7 4.7E-18 1.6E-22 166.8 6.3 146 82-282 3-156 (272)
113 1f6b_A SAR1; gtpases, N-termin 99.7 7E-17 2.4E-21 150.7 14.1 160 80-281 23-190 (198)
114 2f7s_A C25KG, RAS-related prot 99.7 6.4E-17 2.2E-21 152.7 13.9 148 80-282 23-191 (217)
115 3kkq_A RAS-related protein M-R 99.7 4E-17 1.4E-21 149.6 12.1 152 79-282 15-174 (183)
116 3q72_A GTP-binding protein RAD 99.7 4.5E-17 1.5E-21 146.5 12.2 150 82-282 2-156 (166)
117 2bcg_Y Protein YP2, GTP-bindin 99.7 2.1E-17 7.3E-22 154.7 10.3 153 80-282 6-163 (206)
118 2a9k_A RAS-related protein RAL 99.7 7.6E-17 2.6E-21 147.7 13.7 153 79-282 15-173 (187)
119 2bov_A RAla, RAS-related prote 99.7 1E-16 3.5E-21 149.6 14.7 153 79-282 11-169 (206)
120 2o52_A RAS-related protein RAB 99.7 2.1E-17 7.1E-22 154.4 9.8 153 80-282 23-180 (200)
121 2x77_A ADP-ribosylation factor 99.7 1.8E-17 6.1E-22 153.0 9.3 153 80-282 20-176 (189)
122 2wjg_A FEOB, ferrous iron tran 99.7 2.7E-17 9.4E-22 151.4 10.5 149 80-282 5-161 (188)
123 3gj0_A GTP-binding nuclear pro 99.7 2E-17 6.9E-22 156.9 9.8 155 78-282 11-167 (221)
124 1moz_A ARL1, ADP-ribosylation 99.7 2.4E-17 8.1E-22 151.0 10.0 153 80-282 16-172 (183)
125 3r7w_A Gtpase1, GTP-binding pr 99.7 7E-17 2.4E-21 161.4 13.8 161 82-280 3-171 (307)
126 4dcu_A GTP-binding protein ENG 99.7 2.4E-17 8.2E-22 173.8 10.7 150 79-282 20-177 (456)
127 3t5g_A GTP-binding protein RHE 99.7 4.1E-17 1.4E-21 149.2 10.5 152 80-282 4-161 (181)
128 1z06_A RAS-related protein RAB 99.7 4.7E-17 1.6E-21 150.2 10.9 151 79-280 17-178 (189)
129 3o47_A ADP-ribosylation factor 99.7 2.7E-17 9.2E-22 166.0 9.8 154 79-282 162-319 (329)
130 2atx_A Small GTP binding prote 99.7 4.3E-17 1.5E-21 151.0 10.4 159 80-282 16-185 (194)
131 3gee_A MNME, tRNA modification 99.7 9.2E-17 3.1E-21 169.3 14.2 150 81-282 232-390 (476)
132 3cpj_B GTP-binding protein YPT 99.7 4.6E-17 1.6E-21 154.8 10.8 153 80-282 11-168 (223)
133 2gco_A H9, RHO-related GTP-bin 99.7 2.8E-17 9.7E-22 153.5 9.1 160 80-282 23-192 (201)
134 4djt_A GTP-binding nuclear pro 99.7 3.1E-17 1.1E-21 155.0 9.5 154 79-282 8-167 (218)
135 3q85_A GTP-binding protein REM 99.7 1.6E-16 5.6E-21 143.2 13.7 151 82-282 2-159 (169)
136 3oes_A GTPase rhebl1; small GT 99.7 7.8E-17 2.7E-21 150.4 11.9 155 79-282 21-179 (201)
137 3reg_A RHO-like small GTPase; 99.7 9.5E-17 3.3E-21 148.8 12.2 157 79-282 20-180 (194)
138 2fv8_A H6, RHO-related GTP-bin 99.7 8.6E-17 2.9E-21 151.0 11.8 160 80-282 23-192 (207)
139 2qu8_A Putative nucleolar GTP- 99.7 1.6E-16 5.6E-21 151.5 13.6 160 80-282 27-197 (228)
140 2j1l_A RHO-related GTP-binding 99.7 1.3E-16 4.3E-21 150.8 11.7 157 79-282 31-201 (214)
141 2yc2_C IFT27, small RAB-relate 99.7 7.2E-17 2.5E-21 150.8 9.9 156 80-282 18-184 (208)
142 3bwd_D RAC-like GTP-binding pr 99.7 4.5E-17 1.5E-21 148.8 7.9 159 80-282 6-173 (182)
143 2j0v_A RAC-like GTP-binding pr 99.7 1.3E-16 4.3E-21 150.1 10.1 158 80-282 7-172 (212)
144 1xzp_A Probable tRNA modificat 99.7 1.4E-16 4.9E-21 168.0 11.2 147 81-282 242-397 (482)
145 3lxw_A GTPase IMAP family memb 99.7 4.9E-16 1.7E-20 150.4 13.7 157 80-282 19-200 (247)
146 3q3j_B RHO-related GTP-binding 99.7 3E-16 1E-20 148.3 11.7 164 78-282 23-195 (214)
147 2q3h_A RAS homolog gene family 99.7 3.2E-16 1.1E-20 146.0 11.4 157 79-282 17-187 (201)
148 2atv_A RERG, RAS-like estrogen 99.7 4.9E-16 1.7E-20 144.3 12.2 152 80-282 26-183 (196)
149 3l0i_B RAS-related protein RAB 99.6 1.8E-17 6.1E-22 154.6 1.1 153 79-281 30-187 (199)
150 1m7b_A RND3/RHOE small GTP-bin 99.6 9.4E-16 3.2E-20 140.9 12.3 158 80-282 5-175 (184)
151 3lvq_E ARF-GAP with SH3 domain 99.6 7.2E-16 2.5E-20 164.3 12.9 154 79-282 319-476 (497)
152 3geh_A MNME, tRNA modification 99.6 2.8E-16 9.7E-21 165.0 9.0 146 81-282 223-376 (462)
153 2iwr_A Centaurin gamma 1; ANK 99.6 2.8E-15 9.4E-20 136.6 13.8 149 80-282 5-161 (178)
154 3c5c_A RAS-like protein 12; GD 99.6 1.3E-15 4.5E-20 140.5 11.8 153 79-282 18-178 (187)
155 4dkx_A RAS-related protein RAB 99.6 2E-15 6.9E-20 143.0 13.3 154 79-282 10-168 (216)
156 3th5_A RAS-related C3 botulinu 99.4 2.4E-17 8.3E-22 154.2 0.0 162 79-282 27-197 (204)
157 2cxx_A Probable GTP-binding pr 99.6 1.1E-15 3.9E-20 140.4 11.1 155 83-282 2-176 (190)
158 3t5d_A Septin-7; GTP-binding p 99.6 1.6E-15 5.3E-20 149.1 12.7 160 81-282 7-196 (274)
159 3ihw_A Centg3; RAS, centaurin, 99.6 2.9E-15 1E-19 138.0 13.6 151 78-282 16-172 (184)
160 3cbq_A GTP-binding protein REM 99.6 4.1E-15 1.4E-19 138.4 14.5 153 79-282 20-180 (195)
161 1gwn_A RHO-related GTP-binding 99.6 1.4E-15 4.7E-20 142.9 10.2 158 79-282 25-196 (205)
162 2wkq_A NPH1-1, RAS-related C3 99.6 2.1E-15 7.1E-20 151.6 11.2 159 80-282 153-322 (332)
163 1lnz_A SPO0B-associated GTP-bi 99.6 6.5E-16 2.2E-20 156.1 7.4 152 82-282 158-322 (342)
164 2qtf_A Protein HFLX, GTP-bindi 99.6 4.3E-15 1.5E-19 151.5 13.3 155 82-282 179-346 (364)
165 3lxx_A GTPase IMAP family memb 99.6 6.4E-15 2.2E-19 141.6 13.3 159 78-280 25-204 (239)
166 1nrj_B SR-beta, signal recogni 99.6 3.1E-15 1.1E-19 141.2 10.4 151 79-277 9-171 (218)
167 1h65_A Chloroplast outer envel 99.6 2.3E-14 8E-19 140.3 15.3 118 79-233 36-167 (270)
168 2zej_A Dardarin, leucine-rich 99.6 5.7E-15 2E-19 135.8 9.8 160 82-282 2-170 (184)
169 3def_A T7I23.11 protein; chlor 99.5 1.1E-14 3.6E-19 142.2 10.4 118 79-233 33-164 (262)
170 2e87_A Hypothetical protein PH 99.5 1.6E-14 5.5E-19 147.4 11.7 153 80-282 165-328 (357)
171 2g3y_A GTP-binding protein GEM 99.5 2.5E-14 8.5E-19 135.0 12.1 155 79-282 34-195 (211)
172 1pui_A ENGB, probable GTP-bind 99.5 4.2E-14 1.4E-18 132.4 13.0 156 79-282 23-191 (210)
173 3dpu_A RAB family protein; roc 99.5 8.5E-15 2.9E-19 157.4 9.2 153 79-282 38-200 (535)
174 1jwy_B Dynamin A GTPase domain 99.5 1E-14 3.5E-19 145.9 9.0 69 158-234 129-212 (315)
175 2aka_B Dynamin-1; fusion prote 99.5 1.5E-14 5E-19 143.5 9.8 107 159-282 124-245 (299)
176 2cjw_A GTP-binding protein GEM 99.5 5.4E-14 1.8E-18 130.4 12.9 154 80-282 4-164 (192)
177 1wxq_A GTP-binding protein; st 99.5 9E-14 3.1E-18 143.4 11.4 37 160-196 71-114 (397)
178 3p32_A Probable GTPase RV1496/ 99.5 4.2E-14 1.4E-18 144.1 7.9 108 156-282 168-276 (355)
179 2j69_A Bacterial dynamin-like 99.5 1.3E-13 4.4E-18 152.1 12.3 114 160-282 174-317 (695)
180 2f9l_A RAB11B, member RAS onco 99.5 1.9E-13 6.5E-18 127.2 11.5 152 81-282 4-160 (199)
181 2ged_A SR-beta, signal recogni 99.5 1.1E-13 3.7E-18 127.8 8.9 116 80-236 46-172 (193)
182 3r7w_B Gtpase2, GTP-binding pr 99.5 1.2E-13 4E-18 137.6 9.2 180 84-301 1-186 (331)
183 2p67_A LAO/AO transport system 99.4 2.1E-13 7.2E-18 138.1 8.6 107 157-282 146-253 (341)
184 2qag_A Septin-2, protein NEDD5 99.4 4.1E-13 1.4E-17 137.0 9.0 159 80-280 35-223 (361)
185 1oix_A RAS-related protein RAB 99.4 7E-13 2.4E-17 122.7 9.6 153 80-282 27-184 (191)
186 2www_A Methylmalonic aciduria 99.4 1.4E-12 4.7E-17 132.5 10.6 107 157-282 164-271 (349)
187 3t34_A Dynamin-related protein 99.4 2.2E-12 7.5E-17 131.6 11.1 106 158-281 134-252 (360)
188 2qpt_A EH domain-containing pr 99.3 2.7E-12 9.3E-17 137.8 11.0 79 160-250 154-244 (550)
189 2x2e_A Dynamin-1; nitration, h 99.3 6.8E-12 2.3E-16 127.7 13.0 107 159-282 129-250 (353)
190 3c5h_A Glucocorticoid receptor 99.3 1.8E-12 6.3E-17 125.7 8.3 82 183-282 162-247 (255)
191 3zvr_A Dynamin-1; hydrolase, D 99.3 1.4E-12 4.9E-17 143.1 8.2 107 158-282 148-270 (772)
192 1udx_A The GTP-binding protein 99.3 4.1E-12 1.4E-16 131.3 10.8 153 81-282 156-317 (416)
193 2wsm_A Hydrogenase expression/ 99.3 1.4E-12 4.9E-17 123.1 6.3 165 80-282 28-206 (221)
194 1yrb_A ATP(GTP)binding protein 99.2 3.4E-11 1.2E-15 116.7 11.0 110 159-282 108-249 (262)
195 4a9a_A Ribosome-interacting GT 99.2 2.3E-11 7.9E-16 123.8 9.4 113 80-232 70-194 (376)
196 1jal_A YCHF protein; nucleotid 99.1 1.4E-10 4.9E-15 117.3 10.9 82 83-195 3-108 (363)
197 2dby_A GTP-binding protein; GD 99.1 1.8E-10 6.1E-15 117.2 10.4 37 159-195 68-111 (368)
198 2qm8_A GTPase/ATPase; G protei 99.1 1.2E-10 4.1E-15 117.5 8.9 108 157-282 145-253 (337)
199 1xe1_A Hypothetical protein PF 99.1 3.7E-10 1.3E-14 93.3 8.8 81 308-392 31-113 (116)
200 2qnr_A Septin-2, protein NEDD5 99.0 7.3E-10 2.5E-14 110.0 11.0 161 81-282 17-206 (301)
201 1zcb_A G alpha I/13; GTP-bindi 99.0 1.8E-09 6.1E-14 109.7 13.5 138 144-282 185-345 (362)
202 2j37_W Signal recognition part 99.0 3.2E-10 1.1E-14 119.7 8.2 65 158-233 182-253 (504)
203 2qag_C Septin-7; cell cycle, c 99.0 4.2E-10 1.4E-14 116.3 7.4 158 81-280 30-217 (418)
204 2hf9_A Probable hydrogenase ni 98.9 1.6E-09 5.6E-14 102.3 8.3 99 159-282 118-216 (226)
205 3ohm_A Guanine nucleotide-bind 98.9 4.6E-09 1.6E-13 104.9 10.1 132 144-282 151-310 (327)
206 4fid_A G protein alpha subunit 98.8 2.1E-08 7.2E-13 100.5 13.3 136 144-282 145-320 (340)
207 3ec1_A YQEH GTPase; atnos1, at 98.8 6E-10 2.1E-14 113.8 0.0 150 82-280 162-321 (369)
208 2qag_B Septin-6, protein NEDD5 98.7 3.1E-08 1E-12 102.1 10.8 140 79-258 39-210 (427)
209 3h2y_A GTPase family protein; 98.7 1.2E-09 4E-14 111.6 0.0 152 82-281 160-321 (368)
210 1tq4_A IIGP1, interferon-induc 98.7 2.2E-07 7.7E-12 95.6 14.6 157 81-282 68-245 (413)
211 2ohf_A Protein OLA1, GTP-bindi 98.7 2.1E-08 7.1E-13 102.5 6.6 85 80-195 20-128 (396)
212 1cip_A Protein (guanine nucleo 98.7 4.3E-08 1.5E-12 99.2 8.7 138 144-282 177-336 (353)
213 2v3c_C SRP54, signal recogniti 98.6 9.4E-08 3.2E-12 99.3 10.3 66 158-233 179-251 (432)
214 3sop_A Neuronal-specific septi 98.6 1.7E-07 5.7E-12 91.4 10.5 64 183-259 111-175 (270)
215 3dm5_A SRP54, signal recogniti 98.6 5.1E-07 1.7E-11 93.4 13.7 96 158-281 181-282 (443)
216 3kl4_A SRP54, signal recogniti 98.4 1.9E-06 6.6E-11 89.1 13.6 94 158-280 178-280 (433)
217 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 4.2E-07 1.4E-11 93.0 8.3 86 80-195 18-127 (392)
218 1j8m_F SRP54, signal recogniti 98.4 2E-06 7E-11 84.8 12.8 96 158-281 179-282 (297)
219 1u0l_A Probable GTPase ENGC; p 98.3 3.1E-07 1.1E-11 91.0 4.5 102 161-282 64-165 (301)
220 1azs_C GS-alpha; complex (lyas 98.3 2.6E-06 8.8E-11 87.3 10.7 85 144-232 201-296 (402)
221 1puj_A YLQF, conserved hypothe 98.2 2.4E-06 8.2E-11 83.7 8.3 95 164-282 3-98 (282)
222 2xtz_A Guanine nucleotide-bind 98.2 1.2E-06 4E-11 88.6 5.9 71 158-232 181-262 (354)
223 1f5n_A Interferon-induced guan 98.2 8.5E-07 2.9E-11 95.1 4.4 27 79-105 35-61 (592)
224 2xxa_A Signal recognition part 98.1 6.3E-06 2.1E-10 85.5 8.4 64 158-232 182-252 (433)
225 2yv5_A YJEQ protein; hydrolase 98.1 1.8E-06 6.2E-11 85.5 3.7 96 170-282 66-161 (302)
226 3e70_C DPA, signal recognition 98.1 1.9E-05 6.6E-10 78.8 11.2 94 159-281 211-311 (328)
227 1puj_A YLQF, conserved hypothe 98.0 3.5E-06 1.2E-10 82.5 5.1 59 80-171 118-176 (282)
228 3ec1_A YQEH GTPase; atnos1, at 97.9 2.8E-05 9.7E-10 79.0 8.5 104 162-282 51-154 (369)
229 3cnl_A YLQF, putative uncharac 97.8 2.9E-05 1E-09 75.0 7.8 87 168-281 5-92 (262)
230 1t9h_A YLOQ, probable GTPase E 97.7 3.5E-05 1.2E-09 76.1 6.4 87 180-282 83-169 (307)
231 3l82_B F-box only protein 4; T 97.7 6.5E-05 2.2E-09 69.4 7.7 94 169-280 111-213 (227)
232 2yhs_A FTSY, cell division pro 97.7 4.8E-05 1.6E-09 79.5 7.6 64 158-232 374-450 (503)
233 3h2y_A GTPase family protein; 97.7 4.1E-05 1.4E-09 77.8 6.9 98 169-282 55-152 (368)
234 1d1n_A Initiation factor 2; be 97.6 7.4E-05 2.5E-09 59.9 5.5 77 314-392 9-90 (99)
235 3szr_A Interferon-induced GTP- 97.6 0.00011 3.6E-09 79.8 8.5 65 159-233 146-227 (608)
236 1rj9_A FTSY, signal recognitio 97.6 0.00022 7.5E-09 70.4 9.7 64 159-233 184-260 (304)
237 3cnl_A YLQF, putative uncharac 97.6 2.4E-05 8.3E-10 75.6 2.7 22 83-104 100-121 (262)
238 1vma_A Cell division protein F 97.5 0.00016 5.4E-09 71.5 8.1 26 80-105 102-127 (306)
239 2crv_A IF-2MT, translation ini 97.4 0.00031 1.1E-08 58.3 7.4 79 313-393 12-99 (120)
240 2ffh_A Protein (FFH); SRP54, s 97.4 0.00042 1.4E-08 71.4 9.1 64 158-232 179-249 (425)
241 2px0_A Flagellar biosynthesis 97.4 0.00018 6.3E-09 70.7 6.1 24 81-104 104-127 (296)
242 1zu4_A FTSY; GTPase, signal re 97.3 0.0004 1.4E-08 69.0 8.3 26 80-105 103-128 (320)
243 3l2o_B F-box only protein 4; s 97.3 0.00045 1.5E-08 66.9 7.4 97 167-281 194-299 (312)
244 3q5d_A Atlastin-1; G protein, 97.2 0.00093 3.2E-08 69.2 9.9 27 79-105 64-90 (447)
245 1zo1_I IF2, translation initia 97.1 0.00097 3.3E-08 70.2 8.5 95 297-393 394-493 (501)
246 4dzz_A Plasmid partitioning pr 97.1 0.0019 6.6E-08 59.0 9.4 64 158-232 74-142 (206)
247 2rcn_A Probable GTPase ENGC; Y 97.1 0.00081 2.8E-08 67.7 7.0 83 181-281 128-210 (358)
248 1ls1_A Signal recognition part 96.8 0.0027 9.4E-08 62.2 8.3 64 158-232 179-249 (295)
249 3b9q_A Chloroplast SRP recepto 96.8 0.0031 1E-07 62.1 8.5 26 80-105 98-123 (302)
250 3cwq_A Para family chromosome 96.7 0.0057 2E-07 56.6 9.2 65 158-232 66-132 (209)
251 2og2_A Putative signal recogni 96.7 0.0038 1.3E-07 62.8 8.2 26 80-105 155-180 (359)
252 3izy_P Translation initiation 96.5 0.006 2E-07 64.7 9.2 178 165-391 346-534 (537)
253 1g7s_A Translation initiation 96.3 0.015 5E-07 62.6 10.8 83 310-393 462-549 (594)
254 1t9h_A YLOQ, probable GTPase E 95.7 0.0027 9.2E-08 62.5 1.2 23 82-104 173-195 (307)
255 3ea0_A ATPase, para family; al 95.4 0.021 7.3E-07 53.5 6.3 65 159-232 118-184 (245)
256 3end_A Light-independent proto 95.3 0.019 6.4E-07 56.2 6.0 67 158-232 155-225 (307)
257 2yv5_A YJEQ protein; hydrolase 95.1 0.015 5.3E-07 57.0 4.6 21 83-103 166-186 (302)
258 1ye8_A Protein THEP1, hypothet 95.1 0.012 4.1E-07 53.0 3.4 23 84-106 2-24 (178)
259 4ido_A Atlastin-1; GTPase, GTP 94.9 0.18 6.1E-06 52.0 11.9 137 79-232 64-221 (457)
260 2ph1_A Nucleotide-binding prot 94.7 0.048 1.6E-06 52.0 6.6 68 158-232 127-194 (262)
261 1lvg_A Guanylate kinase, GMP k 94.6 0.016 5.4E-07 53.0 3.0 24 83-106 5-28 (198)
262 1kgd_A CASK, peripheral plasma 94.6 0.02 7E-07 51.3 3.6 23 83-105 6-28 (180)
263 1bif_A 6-phosphofructo-2-kinas 94.5 0.012 4E-07 61.6 2.0 25 80-104 37-61 (469)
264 3c8u_A Fructokinase; YP_612366 94.5 0.024 8.1E-07 52.1 3.9 26 80-105 20-45 (208)
265 3asz_A Uridine kinase; cytidin 94.3 0.027 9.3E-07 51.6 3.8 27 81-107 5-31 (211)
266 1znw_A Guanylate kinase, GMP k 94.2 0.026 8.8E-07 51.8 3.4 25 82-106 20-44 (207)
267 1knq_A Gluconate kinase; ALFA/ 94.2 0.035 1.2E-06 49.2 4.2 28 81-108 7-34 (175)
268 4eun_A Thermoresistant glucoki 94.2 0.03 1E-06 51.1 3.8 28 81-108 28-55 (200)
269 1kag_A SKI, shikimate kinase I 94.2 0.027 9.2E-07 49.7 3.3 26 83-108 5-30 (173)
270 3tr0_A Guanylate kinase, GMP k 94.1 0.03 1E-06 50.9 3.7 24 83-106 8-31 (205)
271 3a00_A Guanylate kinase, GMP k 94.1 0.024 8.2E-07 51.1 2.9 23 83-105 2-24 (186)
272 3ney_A 55 kDa erythrocyte memb 94.1 0.032 1.1E-06 51.0 3.7 27 80-106 17-43 (197)
273 1zp6_A Hypothetical protein AT 94.0 0.029 9.8E-07 50.5 3.3 24 82-105 9-32 (191)
274 3kjh_A CO dehydrogenase/acetyl 94.0 0.057 2E-06 50.5 5.5 67 157-232 129-195 (254)
275 4gp7_A Metallophosphoesterase; 93.9 0.03 1E-06 49.8 3.0 21 83-103 10-30 (171)
276 1g3q_A MIND ATPase, cell divis 93.8 0.071 2.4E-06 49.6 5.7 65 159-232 111-175 (237)
277 3lw7_A Adenylate kinase relate 93.8 0.037 1.3E-06 48.5 3.5 25 83-108 2-26 (179)
278 1z6g_A Guanylate kinase; struc 93.7 0.031 1.1E-06 51.9 3.0 25 82-106 23-47 (218)
279 2bbw_A Adenylate kinase 4, AK4 93.7 0.043 1.5E-06 51.8 4.0 28 82-109 27-54 (246)
280 3kb2_A SPBC2 prophage-derived 93.6 0.041 1.4E-06 48.3 3.5 25 83-107 2-26 (173)
281 3tau_A Guanylate kinase, GMP k 93.6 0.041 1.4E-06 50.5 3.6 26 81-106 7-32 (208)
282 3t61_A Gluconokinase; PSI-biol 93.6 0.04 1.4E-06 50.2 3.5 27 82-108 18-44 (202)
283 2j41_A Guanylate kinase; GMP, 93.6 0.038 1.3E-06 50.2 3.2 24 82-105 6-29 (207)
284 1np6_A Molybdopterin-guanine d 93.5 0.045 1.5E-06 49.0 3.6 23 82-104 6-28 (174)
285 1s96_A Guanylate kinase, GMP k 93.5 0.041 1.4E-06 51.2 3.4 26 81-106 15-40 (219)
286 2rcn_A Probable GTPase ENGC; Y 93.5 0.035 1.2E-06 55.6 3.1 23 83-105 216-238 (358)
287 1htw_A HI0065; nucleotide-bind 93.5 0.042 1.4E-06 48.4 3.2 26 81-106 32-57 (158)
288 1tev_A UMP-CMP kinase; ploop, 93.5 0.048 1.7E-06 48.8 3.8 28 81-108 2-29 (196)
289 1cke_A CK, MSSA, protein (cyti 93.5 0.047 1.6E-06 50.5 3.8 25 83-107 6-30 (227)
290 1hyq_A MIND, cell division inh 93.4 0.089 3E-06 49.9 5.7 66 158-232 109-174 (263)
291 2rhm_A Putative kinase; P-loop 93.3 0.058 2E-06 48.4 4.1 28 81-108 4-31 (193)
292 1ly1_A Polynucleotide kinase; 93.3 0.045 1.6E-06 48.4 3.2 22 83-104 3-24 (181)
293 3cm0_A Adenylate kinase; ATP-b 93.2 0.062 2.1E-06 48.0 4.0 27 82-108 4-30 (186)
294 2jeo_A Uridine-cytidine kinase 93.2 0.057 2E-06 50.9 3.9 28 81-108 24-51 (245)
295 2bdt_A BH3686; alpha-beta prot 93.2 0.044 1.5E-06 49.2 2.9 23 83-105 3-25 (189)
296 2pcj_A ABC transporter, lipopr 93.2 0.045 1.5E-06 51.1 3.1 21 83-103 31-51 (224)
297 3tif_A Uncharacterized ABC tra 93.1 0.043 1.5E-06 51.6 2.9 23 82-104 31-53 (235)
298 3tqc_A Pantothenate kinase; bi 93.1 0.063 2.2E-06 53.0 4.2 29 79-107 89-117 (321)
299 2v9p_A Replication protein E1; 93.1 0.049 1.7E-06 53.4 3.3 26 80-105 124-149 (305)
300 3b85_A Phosphate starvation-in 93.1 0.048 1.6E-06 50.3 3.1 23 83-105 23-45 (208)
301 1xjc_A MOBB protein homolog; s 93.0 0.059 2E-06 48.0 3.5 24 81-104 3-26 (169)
302 2qor_A Guanylate kinase; phosp 93.0 0.05 1.7E-06 49.7 3.2 26 81-106 11-36 (204)
303 3la6_A Tyrosine-protein kinase 93.0 0.18 6.2E-06 48.8 7.3 66 159-232 201-266 (286)
304 2onk_A Molybdate/tungstate ABC 93.0 0.048 1.6E-06 51.5 3.0 22 83-104 25-46 (240)
305 2jaq_A Deoxyguanosine kinase; 92.9 0.062 2.1E-06 48.6 3.6 25 84-108 2-26 (205)
306 2cbz_A Multidrug resistance-as 92.9 0.044 1.5E-06 51.6 2.7 21 83-103 32-52 (237)
307 3aez_A Pantothenate kinase; tr 92.9 0.062 2.1E-06 52.9 3.8 28 79-106 87-114 (312)
308 3trf_A Shikimate kinase, SK; a 92.9 0.064 2.2E-06 47.9 3.6 27 82-108 5-31 (185)
309 3vaa_A Shikimate kinase, SK; s 92.9 0.066 2.2E-06 48.7 3.8 28 81-108 24-51 (199)
310 2plr_A DTMP kinase, probable t 92.9 0.07 2.4E-06 48.5 3.9 28 81-108 3-30 (213)
311 2c95_A Adenylate kinase 1; tra 92.9 0.069 2.4E-06 48.0 3.8 28 81-108 8-35 (196)
312 1qhx_A CPT, protein (chloramph 92.9 0.067 2.3E-06 47.3 3.7 26 82-107 3-28 (178)
313 2i3b_A HCR-ntpase, human cance 92.9 0.052 1.8E-06 49.3 3.0 22 84-105 3-24 (189)
314 2pze_A Cystic fibrosis transme 92.8 0.047 1.6E-06 51.2 2.7 21 83-103 35-55 (229)
315 2eyu_A Twitching motility prot 92.8 0.061 2.1E-06 51.5 3.4 24 81-104 24-47 (261)
316 2if2_A Dephospho-COA kinase; a 92.7 0.066 2.3E-06 48.6 3.5 24 83-107 2-25 (204)
317 1kht_A Adenylate kinase; phosp 92.7 0.059 2E-06 48.2 3.1 26 82-107 3-28 (192)
318 1aky_A Adenylate kinase; ATP:A 92.7 0.07 2.4E-06 49.2 3.7 28 81-108 3-30 (220)
319 2cdn_A Adenylate kinase; phosp 92.7 0.08 2.8E-06 48.0 4.0 30 79-108 17-46 (201)
320 2qt1_A Nicotinamide riboside k 92.6 0.074 2.5E-06 48.5 3.7 26 80-105 19-44 (207)
321 1uf9_A TT1252 protein; P-loop, 92.6 0.069 2.4E-06 48.3 3.5 28 80-108 6-33 (203)
322 1jjv_A Dephospho-COA kinase; P 92.6 0.062 2.1E-06 49.0 3.1 25 83-108 3-27 (206)
323 3fb4_A Adenylate kinase; psych 92.6 0.071 2.4E-06 48.9 3.6 25 84-108 2-26 (216)
324 2ff7_A Alpha-hemolysin translo 92.6 0.053 1.8E-06 51.5 2.7 22 83-104 36-57 (247)
325 2d2e_A SUFC protein; ABC-ATPas 92.6 0.059 2E-06 51.2 3.0 22 83-104 30-51 (250)
326 3gfo_A Cobalt import ATP-bindi 92.6 0.053 1.8E-06 52.4 2.7 22 83-104 35-56 (275)
327 2f1r_A Molybdopterin-guanine d 92.6 0.037 1.3E-06 49.5 1.5 22 83-104 3-24 (171)
328 1mv5_A LMRA, multidrug resista 92.5 0.059 2E-06 51.0 2.9 23 82-104 28-50 (243)
329 1ukz_A Uridylate kinase; trans 92.5 0.084 2.9E-06 47.9 3.9 29 80-108 13-41 (203)
330 1odf_A YGR205W, hypothetical 3 92.5 0.081 2.8E-06 51.5 4.0 27 79-105 28-54 (290)
331 1g6h_A High-affinity branched- 92.5 0.059 2E-06 51.4 2.9 22 83-104 34-55 (257)
332 2ghi_A Transport protein; mult 92.5 0.055 1.9E-06 51.8 2.7 22 83-104 47-68 (260)
333 3tlx_A Adenylate kinase 2; str 92.5 0.086 2.9E-06 49.7 4.1 29 80-108 27-55 (243)
334 3uie_A Adenylyl-sulfate kinase 92.5 0.084 2.9E-06 48.0 3.8 27 80-106 23-49 (200)
335 1qf9_A UMP/CMP kinase, protein 92.5 0.098 3.4E-06 46.7 4.3 27 82-108 6-32 (194)
336 2yvu_A Probable adenylyl-sulfa 92.5 0.079 2.7E-06 47.4 3.6 25 80-104 11-35 (186)
337 1wcv_1 SOJ, segregation protei 92.5 0.29 9.9E-06 46.3 7.8 65 158-232 110-181 (257)
338 4g1u_C Hemin import ATP-bindin 92.5 0.061 2.1E-06 51.6 3.0 23 82-104 37-59 (266)
339 1uj2_A Uridine-cytidine kinase 92.4 0.081 2.8E-06 50.1 3.8 29 79-107 19-47 (252)
340 1b0u_A Histidine permease; ABC 92.4 0.061 2.1E-06 51.5 2.9 22 82-103 32-53 (262)
341 1u0l_A Probable GTPase ENGC; p 92.4 0.062 2.1E-06 52.5 2.9 22 83-104 170-191 (301)
342 1ji0_A ABC transporter; ATP bi 92.3 0.064 2.2E-06 50.6 2.9 22 83-104 33-54 (240)
343 1y63_A LMAJ004144AAA protein; 92.3 0.095 3.3E-06 46.9 4.0 25 81-105 9-33 (184)
344 1nks_A Adenylate kinase; therm 92.3 0.075 2.6E-06 47.5 3.3 25 83-107 2-26 (194)
345 3dl0_A Adenylate kinase; phosp 92.3 0.079 2.7E-06 48.6 3.5 25 84-108 2-26 (216)
346 2qi9_C Vitamin B12 import ATP- 92.2 0.062 2.1E-06 51.1 2.7 22 83-104 27-48 (249)
347 2bwj_A Adenylate kinase 5; pho 92.2 0.074 2.5E-06 47.9 3.2 28 81-108 11-38 (199)
348 2zu0_C Probable ATP-dependent 92.2 0.068 2.3E-06 51.3 3.0 22 83-104 47-68 (267)
349 2olj_A Amino acid ABC transpor 92.2 0.068 2.3E-06 51.2 2.9 22 82-103 50-71 (263)
350 2ixe_A Antigen peptide transpo 92.1 0.064 2.2E-06 51.6 2.7 22 83-104 46-67 (271)
351 1sgw_A Putative ABC transporte 92.1 0.067 2.3E-06 49.6 2.7 21 83-103 36-56 (214)
352 1sq5_A Pantothenate kinase; P- 92.1 0.1 3.5E-06 51.2 4.2 28 80-107 78-105 (308)
353 1nn5_A Similar to deoxythymidy 92.1 0.082 2.8E-06 48.3 3.3 25 81-105 8-32 (215)
354 4a74_A DNA repair and recombin 92.1 0.083 2.8E-06 48.7 3.3 22 83-104 26-47 (231)
355 3lnc_A Guanylate kinase, GMP k 92.1 0.056 1.9E-06 50.4 2.2 22 82-103 27-48 (231)
356 1zd8_A GTP:AMP phosphotransfer 92.1 0.091 3.1E-06 48.8 3.6 28 81-108 6-33 (227)
357 2vli_A Antibiotic resistance p 92.1 0.07 2.4E-06 47.4 2.7 27 81-107 4-30 (183)
358 4e22_A Cytidylate kinase; P-lo 92.1 0.093 3.2E-06 49.8 3.7 28 81-108 26-53 (252)
359 1vpl_A ABC transporter, ATP-bi 92.0 0.073 2.5E-06 50.8 2.9 21 83-103 42-62 (256)
360 2wwf_A Thymidilate kinase, put 92.0 0.083 2.9E-06 48.1 3.3 25 81-105 9-33 (212)
361 3zvl_A Bifunctional polynucleo 92.0 0.34 1.2E-05 49.6 8.2 26 79-104 255-280 (416)
362 1rz3_A Hypothetical protein rb 92.0 0.091 3.1E-06 47.9 3.5 26 80-105 20-45 (201)
363 2ehv_A Hypothetical protein PH 92.0 0.077 2.6E-06 49.6 3.1 22 82-103 30-51 (251)
364 2v54_A DTMP kinase, thymidylat 92.0 0.082 2.8E-06 47.8 3.2 26 81-106 3-28 (204)
365 3iij_A Coilin-interacting nucl 92.0 0.09 3.1E-06 46.7 3.4 27 81-107 10-36 (180)
366 1nij_A Hypothetical protein YJ 91.9 0.089 3E-06 51.8 3.5 25 81-105 3-27 (318)
367 1ex7_A Guanylate kinase; subst 91.9 0.087 3E-06 47.7 3.2 22 85-106 4-25 (186)
368 2yz2_A Putative ABC transporte 91.9 0.078 2.7E-06 50.8 2.9 21 83-103 34-54 (266)
369 2ihy_A ABC transporter, ATP-bi 91.8 0.08 2.7E-06 51.2 2.9 22 83-104 48-69 (279)
370 3bfv_A CAPA1, CAPB2, membrane 91.7 0.27 9.3E-06 47.1 6.6 66 159-232 191-256 (271)
371 2nq2_C Hypothetical ABC transp 91.7 0.082 2.8E-06 50.3 2.9 21 83-103 32-52 (253)
372 3umf_A Adenylate kinase; rossm 91.6 0.14 4.8E-06 47.5 4.3 29 80-108 27-55 (217)
373 2vhj_A Ntpase P4, P4; non- hyd 91.6 0.19 6.3E-06 49.5 5.3 21 84-104 125-145 (331)
374 1via_A Shikimate kinase; struc 91.6 0.1 3.5E-06 46.2 3.2 25 84-108 6-30 (175)
375 1zak_A Adenylate kinase; ATP:A 91.5 0.11 3.7E-06 48.0 3.4 27 82-108 5-31 (222)
376 3ec2_A DNA replication protein 91.5 0.089 3E-06 46.8 2.8 23 82-104 38-60 (180)
377 1e4v_A Adenylate kinase; trans 91.4 0.12 4.2E-06 47.4 3.7 25 84-108 2-26 (214)
378 2bbs_A Cystic fibrosis transme 91.4 0.089 3.1E-06 51.2 2.8 21 83-103 65-85 (290)
379 2pt5_A Shikimate kinase, SK; a 91.4 0.13 4.4E-06 45.0 3.6 25 84-108 2-26 (168)
380 2p5t_B PEZT; postsegregational 91.3 0.1 3.5E-06 49.4 3.2 29 79-107 29-57 (253)
381 3kta_A Chromosome segregation 91.3 0.13 4.4E-06 45.7 3.6 24 84-107 28-51 (182)
382 2iyv_A Shikimate kinase, SK; t 91.3 0.1 3.6E-06 46.4 3.0 26 83-108 3-28 (184)
383 3jvv_A Twitching mobility prot 91.3 0.11 3.7E-06 52.1 3.4 24 82-105 123-146 (356)
384 1vht_A Dephospho-COA kinase; s 91.3 0.11 3.9E-06 47.7 3.4 26 82-108 4-29 (218)
385 2kjq_A DNAA-related protein; s 91.3 0.11 3.6E-06 45.2 2.9 24 81-104 35-58 (149)
386 3cio_A ETK, tyrosine-protein k 91.2 0.4 1.4E-05 46.6 7.4 66 159-232 213-278 (299)
387 2gza_A Type IV secretion syste 91.2 0.089 3E-06 52.9 2.7 23 82-104 175-197 (361)
388 3nh6_A ATP-binding cassette SU 91.2 0.059 2E-06 52.9 1.3 24 81-104 79-102 (306)
389 3be4_A Adenylate kinase; malar 91.2 0.14 4.7E-06 47.2 3.8 27 82-108 5-31 (217)
390 2pt7_A CAG-ALFA; ATPase, prote 91.2 0.082 2.8E-06 52.4 2.3 22 83-104 172-193 (330)
391 2pjz_A Hypothetical protein ST 91.1 0.11 3.6E-06 49.9 2.9 22 83-104 31-52 (263)
392 3r20_A Cytidylate kinase; stru 91.0 0.14 4.7E-06 48.1 3.6 28 81-108 8-35 (233)
393 3tui_C Methionine import ATP-b 91.0 0.11 3.7E-06 52.3 3.0 23 82-104 54-76 (366)
394 1gvn_B Zeta; postsegregational 91.0 0.13 4.5E-06 49.8 3.5 27 80-106 31-57 (287)
395 2pbr_A DTMP kinase, thymidylat 90.9 0.12 4.1E-06 46.2 3.0 23 84-106 2-24 (195)
396 2ewv_A Twitching motility prot 90.9 0.12 4.2E-06 52.1 3.3 24 81-104 135-158 (372)
397 1zuh_A Shikimate kinase; alpha 90.8 0.15 5.1E-06 44.7 3.5 26 83-108 8-33 (168)
398 2pez_A Bifunctional 3'-phospho 90.8 0.13 4.5E-06 45.6 3.2 24 81-104 4-27 (179)
399 1lw7_A Transcriptional regulat 90.6 0.11 3.8E-06 52.1 2.7 26 82-107 170-195 (365)
400 1gtv_A TMK, thymidylate kinase 90.6 0.065 2.2E-06 48.9 0.9 21 84-104 2-22 (214)
401 1e6c_A Shikimate kinase; phosp 90.6 0.14 4.8E-06 44.9 3.1 26 83-108 3-28 (173)
402 2vp4_A Deoxynucleoside kinase; 90.5 0.13 4.5E-06 47.9 3.0 28 80-107 18-45 (230)
403 2grj_A Dephospho-COA kinase; T 90.5 0.18 6.3E-06 45.7 3.9 29 80-108 10-38 (192)
404 3a4m_A L-seryl-tRNA(SEC) kinas 90.5 0.14 4.8E-06 48.7 3.2 23 82-104 4-26 (260)
405 3k9g_A PF-32 protein; ssgcid, 90.5 0.51 1.8E-05 44.7 7.2 65 158-232 143-209 (267)
406 2ze6_A Isopentenyl transferase 90.4 0.17 5.8E-06 48.0 3.7 24 84-107 3-26 (253)
407 3fvq_A Fe(3+) IONS import ATP- 90.4 0.14 4.6E-06 51.4 3.1 53 208-270 143-196 (359)
408 1q3t_A Cytidylate kinase; nucl 90.4 0.18 6.1E-06 47.1 3.8 29 80-108 14-42 (236)
409 3sr0_A Adenylate kinase; phosp 90.4 0.17 5.8E-06 46.5 3.6 25 84-108 2-26 (206)
410 2z0h_A DTMP kinase, thymidylat 90.3 0.18 6E-06 45.2 3.6 23 84-106 2-24 (197)
411 2oap_1 GSPE-2, type II secreti 90.3 0.12 4E-06 54.5 2.7 23 82-104 260-282 (511)
412 2xb4_A Adenylate kinase; ATP-b 90.3 0.18 6E-06 46.7 3.6 25 84-108 2-26 (223)
413 2f6r_A COA synthase, bifunctio 90.2 0.17 5.8E-06 48.9 3.5 28 80-108 73-100 (281)
414 1z47_A CYSA, putative ABC-tran 90.2 0.14 4.8E-06 51.2 3.0 45 209-257 151-196 (355)
415 1ak2_A Adenylate kinase isoenz 90.2 0.19 6.5E-06 46.8 3.8 28 81-108 15-42 (233)
416 2yyz_A Sugar ABC transporter, 90.1 0.14 4.9E-06 51.3 3.0 45 209-257 139-184 (359)
417 1p9r_A General secretion pathw 90.1 0.16 5.5E-06 52.1 3.4 26 81-106 166-191 (418)
418 3nwj_A ATSK2; P loop, shikimat 90.0 0.17 5.7E-06 48.1 3.2 27 82-108 48-74 (250)
419 2it1_A 362AA long hypothetical 89.9 0.15 5.2E-06 51.2 3.0 45 209-257 139-184 (362)
420 1g29_1 MALK, maltose transport 89.8 0.16 5.3E-06 51.3 3.0 45 209-257 145-190 (372)
421 2x8a_A Nuclear valosin-contain 89.8 0.18 6.1E-06 48.5 3.3 24 84-107 46-69 (274)
422 3rlf_A Maltose/maltodextrin im 89.8 0.16 5.4E-06 51.3 3.0 53 208-270 138-191 (381)
423 1v43_A Sugar-binding transport 89.7 0.16 5.5E-06 51.2 3.0 47 206-257 145-192 (372)
424 1v5w_A DMC1, meiotic recombina 89.7 0.89 3.1E-05 45.1 8.5 24 82-105 122-145 (343)
425 2oze_A ORF delta'; para, walke 89.6 0.69 2.4E-05 44.5 7.5 66 158-232 153-224 (298)
426 3q9l_A Septum site-determining 89.5 0.28 9.7E-06 46.1 4.5 65 159-232 113-185 (260)
427 2w0m_A SSO2452; RECA, SSPF, un 89.5 0.2 6.9E-06 46.0 3.4 22 83-104 24-45 (235)
428 3bh0_A DNAB-like replicative h 89.4 0.56 1.9E-05 45.9 6.6 24 82-105 68-91 (315)
429 1m7g_A Adenylylsulfate kinase; 89.3 0.21 7.3E-06 45.6 3.3 25 80-104 23-47 (211)
430 2xj4_A MIPZ; replication, cell 89.3 0.38 1.3E-05 46.3 5.3 35 159-195 103-137 (286)
431 1f2t_A RAD50 ABC-ATPase; DNA d 89.1 0.2 6.7E-06 43.4 2.8 23 84-106 25-47 (149)
432 4a1f_A DNAB helicase, replicat 89.0 1.3 4.3E-05 43.9 8.9 71 160-232 128-207 (338)
433 3gd7_A Fusion complex of cysti 88.9 0.21 7E-06 50.7 3.1 22 83-104 48-69 (390)
434 2npi_A Protein CLP1; CLP1-PCF1 88.9 0.19 6.5E-06 52.2 2.9 24 81-104 137-160 (460)
435 4eaq_A DTMP kinase, thymidylat 88.8 0.3 1E-05 45.6 4.0 27 81-107 25-51 (229)
436 3d31_A Sulfate/molybdate ABC t 88.7 0.14 4.7E-06 51.2 1.7 46 208-257 132-178 (348)
437 3ake_A Cytidylate kinase; CMP 88.6 0.28 9.6E-06 44.3 3.6 25 84-108 4-28 (208)
438 1cr0_A DNA primase/helicase; R 88.6 0.26 8.8E-06 47.7 3.5 22 83-104 36-57 (296)
439 1a7j_A Phosphoribulokinase; tr 88.4 0.17 5.9E-06 49.1 2.1 27 81-107 4-30 (290)
440 1ixz_A ATP-dependent metallopr 88.4 0.26 8.9E-06 46.4 3.3 23 84-106 51-73 (254)
441 2z43_A DNA repair and recombin 88.4 1.4 4.8E-05 43.2 8.8 24 82-105 107-130 (324)
442 1xp8_A RECA protein, recombina 88.1 0.79 2.7E-05 46.0 6.8 22 83-104 75-96 (366)
443 1in4_A RUVB, holliday junction 88.1 0.28 9.5E-06 48.5 3.4 27 81-107 50-76 (334)
444 2obl_A ESCN; ATPase, hydrolase 88.0 0.29 1E-05 48.8 3.5 26 81-106 70-95 (347)
445 1svm_A Large T antigen; AAA+ f 87.9 0.32 1.1E-05 49.0 3.8 27 80-106 167-193 (377)
446 1oxx_K GLCV, glucose, ABC tran 87.9 0.14 4.6E-06 51.3 1.0 22 83-104 32-53 (353)
447 3gmt_A Adenylate kinase; ssgci 87.8 0.34 1.2E-05 45.2 3.6 28 81-108 7-34 (230)
448 3euj_A Chromosome partition pr 87.7 0.28 9.6E-06 51.1 3.2 24 83-106 30-53 (483)
449 2cvh_A DNA repair and recombin 87.6 0.31 1.1E-05 44.4 3.2 22 83-104 21-42 (220)
450 1ihu_A Arsenical pump-driving 87.6 1.2 4E-05 47.6 8.3 157 79-280 5-288 (589)
451 1jbk_A CLPB protein; beta barr 87.6 0.37 1.3E-05 42.3 3.6 24 81-104 42-65 (195)
452 1ltq_A Polynucleotide kinase; 87.5 0.3 1E-05 47.2 3.2 22 83-104 3-24 (301)
453 2h92_A Cytidylate kinase; ross 87.5 0.31 1.1E-05 44.6 3.2 26 82-107 3-28 (219)
454 3hr8_A Protein RECA; alpha and 87.3 1.2 4.1E-05 44.4 7.6 22 82-103 61-82 (356)
455 1n0w_A DNA repair protein RAD5 87.2 0.33 1.1E-05 45.0 3.2 23 82-104 24-46 (243)
456 1iy2_A ATP-dependent metallopr 87.2 0.33 1.1E-05 46.4 3.3 23 84-106 75-97 (278)
457 1p5z_B DCK, deoxycytidine kina 87.0 0.25 8.5E-06 46.9 2.2 27 80-106 22-48 (263)
458 1xwi_A SKD1 protein; VPS4B, AA 86.8 1.4 4.9E-05 43.1 7.8 25 80-104 43-67 (322)
459 1lv7_A FTSH; alpha/beta domain 86.8 0.44 1.5E-05 44.8 3.9 24 82-105 45-68 (257)
460 3b60_A Lipid A export ATP-bind 86.7 0.29 9.8E-06 52.5 2.8 23 82-104 369-391 (582)
461 1yqt_A RNAse L inhibitor; ATP- 86.7 0.31 1.1E-05 51.6 3.0 23 82-104 47-69 (538)
462 3b5x_A Lipid A export ATP-bind 86.5 0.31 1.1E-05 52.2 2.9 24 81-104 368-391 (582)
463 2dpy_A FLII, flagellum-specifi 86.2 0.41 1.4E-05 49.3 3.5 25 81-105 156-180 (438)
464 3qf7_A RAD50; ABC-ATPase, ATPa 86.2 0.38 1.3E-05 48.2 3.2 22 84-105 25-46 (365)
465 2ocp_A DGK, deoxyguanosine kin 86.0 0.43 1.5E-05 44.6 3.3 25 82-106 2-26 (241)
466 3qf4_B Uncharacterized ABC tra 85.9 0.3 1E-05 52.5 2.4 24 81-104 380-403 (598)
467 2yl4_A ATP-binding cassette SU 85.9 0.29 9.9E-06 52.6 2.3 24 81-104 369-392 (595)
468 3ozx_A RNAse L inhibitor; ATP 85.7 0.37 1.3E-05 51.1 2.9 22 83-104 26-47 (538)
469 1nlf_A Regulatory protein REPA 85.7 0.45 1.5E-05 45.5 3.3 23 82-104 30-52 (279)
470 4a82_A Cystic fibrosis transme 85.7 0.26 8.7E-06 52.8 1.7 24 81-104 366-389 (578)
471 1sxj_A Activator 1 95 kDa subu 85.6 3.1 0.0001 43.6 10.0 26 81-106 76-101 (516)
472 3j16_B RLI1P; ribosome recycli 85.4 0.39 1.3E-05 51.6 3.0 24 82-105 103-126 (608)
473 3crm_A TRNA delta(2)-isopenten 85.3 0.57 1.9E-05 46.1 3.9 25 83-107 6-30 (323)
474 2w58_A DNAI, primosome compone 85.3 0.54 1.8E-05 42.3 3.5 22 83-104 55-76 (202)
475 1yqt_A RNAse L inhibitor; ATP- 85.1 0.42 1.4E-05 50.7 3.0 22 83-104 313-334 (538)
476 3bos_A Putative DNA replicatio 85.1 0.55 1.9E-05 43.1 3.6 24 81-104 51-74 (242)
477 3qks_A DNA double-strand break 85.0 0.44 1.5E-05 43.5 2.8 25 83-107 24-48 (203)
478 3d8b_A Fidgetin-like protein 1 84.8 1.5 5E-05 43.6 6.8 24 80-103 115-138 (357)
479 3qf4_A ABC transporter, ATP-bi 84.7 0.31 1.1E-05 52.2 1.8 24 81-104 368-391 (587)
480 2p65_A Hypothetical protein PF 84.4 0.49 1.7E-05 41.4 2.8 24 81-104 42-65 (187)
481 3ozx_A RNAse L inhibitor; ATP 84.3 0.46 1.6E-05 50.3 2.9 22 83-104 295-316 (538)
482 3bk7_A ABC transporter ATP-bin 84.3 0.48 1.6E-05 51.0 3.0 22 83-104 383-404 (607)
483 3bk7_A ABC transporter ATP-bin 84.3 0.47 1.6E-05 51.0 2.9 23 82-104 117-139 (607)
484 3d3q_A TRNA delta(2)-isopenten 84.1 0.65 2.2E-05 46.0 3.7 25 83-107 8-32 (340)
485 1byi_A Dethiobiotin synthase; 84.1 2 6.7E-05 39.2 6.9 68 158-232 107-179 (224)
486 4he6_A Peptidase family U32; u 83.8 1 3.5E-05 35.2 4.1 55 332-390 26-85 (89)
487 3exa_A TRNA delta(2)-isopenten 83.8 0.66 2.3E-05 45.4 3.5 26 82-107 3-28 (322)
488 2dr3_A UPF0273 protein PH0284; 83.7 0.67 2.3E-05 42.9 3.5 21 83-103 24-44 (247)
489 2ga8_A Hypothetical 39.9 kDa p 83.6 0.68 2.3E-05 46.1 3.6 26 81-106 23-48 (359)
490 3j16_B RLI1P; ribosome recycli 83.2 0.55 1.9E-05 50.4 3.0 21 84-104 380-400 (608)
491 3t15_A Ribulose bisphosphate c 83.1 0.86 2.9E-05 44.0 4.1 28 80-107 34-61 (293)
492 3foz_A TRNA delta(2)-isopenten 83.1 0.85 2.9E-05 44.5 4.0 27 81-107 9-35 (316)
493 3vfd_A Spastin; ATPase, microt 82.9 2 7E-05 43.1 6.9 23 81-103 147-169 (389)
494 4b4t_L 26S protease subunit RP 82.8 1.8 6.2E-05 44.4 6.5 27 80-106 213-239 (437)
495 1pzn_A RAD51, DNA repair and r 82.5 0.76 2.6E-05 45.7 3.5 24 82-105 131-154 (349)
496 2b8t_A Thymidine kinase; deoxy 82.5 1.1 3.7E-05 41.6 4.3 22 82-103 12-33 (223)
497 2qz4_A Paraplegin; AAA+, SPG7, 82.4 0.87 3E-05 42.6 3.8 25 81-105 38-62 (262)
498 1e69_A Chromosome segregation 82.4 0.62 2.1E-05 45.7 2.8 24 84-107 26-49 (322)
499 3h4m_A Proteasome-activating n 82.4 0.87 3E-05 43.4 3.8 27 80-106 49-75 (285)
500 3b9p_A CG5977-PA, isoform A; A 82.4 0.84 2.9E-05 43.8 3.7 26 81-106 53-78 (297)
No 1
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=1.4e-82 Score=668.62 Aligned_cols=425 Identities=58% Similarity=0.979 Sum_probs=407.4
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
..++.++|+++||+|+|||||+++|++.++.+..+.+.++++++.+.|+.++.++|++|..++|+++|+|++.....|++
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
+++.|+|+|||||++|.++|..+++.+|++||||||++|.++++|+..+||++|+.++..+++|++|||+||||++..+|
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence 99999999999999999999999999999999999999999999988899999999999999998999999999988889
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEE
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 317 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~ 317 (513)
++.+++++.+++..+++.+|+....+++++|+||++|.|+.++.+ .++||.|++|+++|+.++.+.+..+.|++++|.
T Consensus 173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~--~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~ 250 (439)
T 3j2k_7 173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD--FCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIV 250 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc--cccccCchHHHHHHHhCCCCccCCCCCeEEEEE
Confidence 999999999999999999998644468999999999999999876 489999999999999999888888999999999
Q ss_pred EEEccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEccCCCCc
Q 010318 318 DKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKPV 397 (513)
Q Consensus 318 ~~~~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~~ 397 (513)
++|++.|++++|+|.+|+|++||.|.++|++..++|++|++++.++++|.|||+|+++|+|++..++++||+|+++++++
T Consensus 251 ~~~~~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~~~~~~~ 330 (439)
T 3j2k_7 251 DKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGILSDDTETDFVAPGENLKIRLKGIEEEEILPGFILCDPSNLC 330 (439)
T ss_pred EEEcCCCeEEEEEEEeeEEecCCEEEEccCCceEEEEEEEECCeEcCEecCCCcceEEEeccchhhcCCcEEecCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ceeeEEEEEEEEeccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEE
Q 010318 398 AAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 476 (513)
Q Consensus 398 ~~~~~f~a~i~~~~~l~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~ 476 (513)
+.++.|+|++.| ++| ++|..||++++|||+.+++|+|.+|.+++|.+||+..+.+|++|+.|+.+.|+|++.+|+|
T Consensus 331 ~~~~~f~a~v~~---l~~~~~i~~g~~~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~~~~l~~~~~~~v~~~~~~p~~ 407 (439)
T 3j2k_7 331 HSGRTFDVQIVI---IEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTIC 407 (439)
T ss_pred ceeeEEEEEEEE---eCCCCcCCCCCEEEEEEeceEEEEEEEEEEEeecCCchhhhccCcceecCCcEEEEEEEeCCeEE
Confidence 999999999999 455 5699999999999999999999999999999999988889999999999999999999999
Q ss_pred eeecccccccceEEEEeCCeEEEEEEEEecC
Q 010318 477 TEKFADFAQLGRFTLRTEGKTVAVGKVTELP 507 (513)
Q Consensus 477 ~e~~~~~~~lgrfilr~~g~tva~G~V~~~~ 507 (513)
+|+|.+|+.+|||+|||+|+|||+|+|+++.
T Consensus 408 ~e~~~~~~~~g~f~l~d~~~tv~~G~i~~v~ 438 (439)
T 3j2k_7 408 LETFKDFPQMGRFTLRDEGKTIAIGKVLKLV 438 (439)
T ss_pred EeeccccccCCCEEEEECCceEEEEEEEEec
Confidence 9999999999999999999999999999985
No 2
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=1.8e-78 Score=642.20 Aligned_cols=425 Identities=53% Similarity=0.947 Sum_probs=361.5
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++.++|+++||+|+|||||+++|++.+|.++.+.+.++.+++.+.|++++.++|++|..++|+++|+|++.+...|.++
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
++.++|+|||||++|.+++.++++.+|++||||||++|.++++|+..+||++|+.++..+++|++|||+||||+..++|+
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~ 199 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 199 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence 99999999999999999999999999999999999999998888878899999999999999889999999999877898
Q ss_pred HHHHHHHHhhhHhhhhhc-cCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEE
Q 010318 239 KERYDEIESKMTPFLKAS-GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPII 317 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~-g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~ 317 (513)
+++++.+.+++..+++.+ |+....+++++|+||++|.|+.++++...++||.|++|+++|+.++.+.+..+.||+++|.
T Consensus 200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~~~~v~ 279 (467)
T 1r5b_A 200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYLDSMTHLERKVNAPFIMPIA 279 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHHHHCCCCHHHHTSCCEEECC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccccccCccccchhHHHHHHhCCCCcCCCCCCcEEEEE
Confidence 999999999999999888 7642125799999999999999998767799999999999999998887777899999999
Q ss_pred EEEccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC-CeeecccCCCCeEEEEeccCCcccceeeeEEccCCCC
Q 010318 318 DKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 396 (513)
Q Consensus 318 ~~~~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~-~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~ 396 (513)
++|++.|++++|+|.+|+|++||.|.++|++..++|++|+++ +.++++|.|||+|+++|+| +..++++||+|++++++
T Consensus 280 ~~~~~~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~i~l~g-~~~~i~rG~vl~~~~~~ 358 (467)
T 1r5b_A 280 SKYKDLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTGYVLTSTKNP 358 (467)
T ss_dssp EEEESSSEEEEEECCBSEEETTEEEEEETTTEEEEEEEEECTTCCEESEEETTCEEEEEEES-CCTTCCTTCEEECSSSC
T ss_pred EEEeCCCeEEEEEEeeeEEeeCCEEEEccCCeeEEEEEEeccCCcEeeEEcCCCEEEEEEec-cHhhCCceEEEeCCCCC
Confidence 999999999999999999999999999999999999999998 9999999999999999999 88899999999999989
Q ss_pred cceeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEE
Q 010318 397 VAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 476 (513)
Q Consensus 397 ~~~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~ 476 (513)
+..+++|+|++.||+. +++|..||++++|+|+.+++|+|..|.+.+|. +|+..+++|++|++|+.+.|+|+|.+|+|
T Consensus 359 ~~~~~~f~a~v~~l~~--~~~~~~g~~~~~~~~t~~~~~~~~~i~~~~d~-~~~~~~~~~~~l~~g~~~~v~l~~~~p~~ 435 (467)
T 1r5b_A 359 VHATTRFIAQIAILEL--PSILTTGYSCVMHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVC 435 (467)
T ss_dssp CCEEEEEEEEEEECSS--CCCBSSCCCBEEESSSCCCCBEESSCCCCCCS-SCCCCSSCCSBCCTTCBCCEEEEEEEEEE
T ss_pred CccceEEEEEEEEeCC--CCccCCCCEEEEEEeCCEEEEEEEEEEEEecC-CccccccCccccCCCCEEEEEEEECcEEE
Confidence 9999999999999542 36799999999999999999999998888998 88888888999999999999999999999
Q ss_pred eeecccccccceEEEEeCCeEEEEEEEEecC
Q 010318 477 TEKFADFAQLGRFTLRTEGKTVAVGKVTELP 507 (513)
Q Consensus 477 ~e~~~~~~~lgrfilr~~g~tva~G~V~~~~ 507 (513)
+++|.+++.||||+||+.|+|+|+|+|+++.
T Consensus 436 ~~~~~~~~~~grf~lrd~~~Tv~~G~i~~~~ 466 (467)
T 1r5b_A 436 MERFEDYQYMGRFTLRDQGTTVAVGKVVKIL 466 (467)
T ss_dssp CCCTTTCHHHHEEEEECSSSCEEEEEEEEEE
T ss_pred EEEcCcCCCCccEEEEECCeEEEEEEEEEec
Confidence 9999999999999999999999999999875
No 3
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=1.7e-74 Score=610.38 Aligned_cols=423 Identities=38% Similarity=0.691 Sum_probs=396.0
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++.++|+++||+|+|||||+++|++.++.++.+.+.++++++.+.|+.++.+++++|..++|+++|+|++.....|.+.
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
++.++|+|||||++|.+++.++++.+|++||||||++|.++++|+...|+++|+.++..+++|++|||+||||+ .+|+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl--~~~~ 161 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDS--VKWD 161 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGG--GTTC
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcccc--ccCC
Confidence 99999999999999999999999999999999999999888788777799999999999999889999999999 5678
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCC------------cchHHHHhhhccCCCC
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWN------------GPCLFEALDRIEITPR 306 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~------------g~~L~~~l~~l~~~~~ 306 (513)
+++++.+.+++..+++.+++.. .+++++|+||++|.|+.++... ++||. |++|++.|+.+++|.+
T Consensus 162 ~~~~~~i~~~~~~~l~~~g~~~-~~~~~i~vSA~~g~nv~~~~~~--~~~~~~~~~~~~tg~~~~~~Ll~~l~~~~~p~~ 238 (458)
T 1f60_A 162 ESRFQEIVKETSNFIKKVGYNP-KTVPFVPISGWNGDNMIEATTN--APWYKGWEKETKAGVVKGKTLLEAIDAIEQPSR 238 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCG-GGCCEEECCTTTCBTTTBCCSS--CTTCCCEEEECSSSEEEESSHHHHHHTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-cCceEEEeecccCcCccccccc--CchhhcccccccccccchHHHHHHhhccCCCcc
Confidence 8889999999999999988742 2479999999999999988654 79997 6789999999988888
Q ss_pred CCCCCceEEEEEEEc--cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccc
Q 010318 307 DPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDI 384 (513)
Q Consensus 307 ~~~~~~~~~i~~~~~--~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i 384 (513)
..+.|++++|.++|+ +.|++++|+|.+|.|++||+|.++|.+..++|++|++++.++.+|.||++|++.|+|++..++
T Consensus 239 ~~~~p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~i~l~gi~~~~i 318 (458)
T 1f60_A 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEI 318 (458)
T ss_dssp CTTSCCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEEEEEEEEETTEECSCBCTTCEEEEEESSCCTTTS
T ss_pred cCCCCcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceEEEeEEEECCeEEEEEcCCCEEEEEEcCCccccc
Confidence 899999999999995 899999999999999999999999999999999999999999999999999999999988999
Q ss_pred eeeeEEccCCC-CcceeeEEEEEEEEeccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCC
Q 010318 385 LSGFVLSSVAK-PVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNG 462 (513)
Q Consensus 385 ~~G~vl~~~~~-~~~~~~~f~a~i~~~~~l~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g 462 (513)
++|++|+++++ ++..+++|+|++.|| ++ .+|..||++++|+++.+++|+|..|.+.+|++||+..+++|++|++|
T Consensus 319 ~rG~vl~~~~~~~~~~~~~f~a~v~~l---~~~~~i~~g~~~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g 395 (458)
T 1f60_A 319 RRGNVCGDAKNDPPKGCASFNATVIVL---NHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSG 395 (458)
T ss_dssp CTTCEEEETTSSCCCCCSEEEEEEEEC---SCSCCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTT
T ss_pred CceeEEecCCCCCCceeeEEEEEEEEe---CCCCCCCCCCEEEEEeccceEEEEEEEEEeEecCccccccccCccccCCC
Confidence 99999999975 889999999999995 44 68999999999999999999999999999999999888889999999
Q ss_pred cEEEEEEEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecCCC
Q 010318 463 AIVVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 509 (513)
Q Consensus 463 ~~~~v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~~~ 509 (513)
+.+.|+|+|.+|+|+++|.+|+.+|||+||+.|+|+|+|+|+++.+.
T Consensus 396 ~~~~v~~~~~~p~~~~~~~~~~~~grf~lr~~~~tv~~G~v~~~~~~ 442 (458)
T 1f60_A 396 DAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKT 442 (458)
T ss_dssp CEEEEEEEESSCCCCCCTTTCGGGSEEEEEETTEEEEEEEEEEEEC-
T ss_pred CEEEEEEEECCeEEEecCccCCCCCcEEEEECCeEEEEEEEEeeccc
Confidence 99999999999999999999999999999999999999999998764
No 4
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=9.6e-74 Score=601.71 Aligned_cols=426 Identities=38% Similarity=0.705 Sum_probs=385.9
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++.++|+++||+|+|||||+++|++.++.++.+.+.+++.++.+.|++++.+++++|..++|+++|+|++.....+.+.
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
++.++|+|||||++|.+++.++++.+|++||||||++|.|++.+.+.+|+++|+.++..+++|++||++||||+...+|+
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~ 162 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD 162 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence 99999999999999999999999999999999999999887776677899999999999999779999999999665588
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEEE
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIID 318 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~ 318 (513)
+++++.+.+++..+++.+++.. ..++++|+||++|.|+.++.+. ++||.|++|++.|+.+++|.+..+.|++++|.+
T Consensus 163 ~~~~~~~~~~i~~~~~~~~~~~-~~~~~i~iSA~~g~~v~e~~~~--~~~~~g~~Ll~~l~~~~~p~~~~~~~~~~~v~~ 239 (435)
T 1jny_A 163 EKRYKEIVDQVSKFMRSYGFNT-NKVRFVPVVAPSGDNITHKSEN--MKWYNGPTLEEYLDQLELPPKPVDKPLRIPIQD 239 (435)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-TTCEEEECBTTTTBTTTBCCSS--CTTCCSCCHHHHHTTCCCCCCGGGSCCBEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-CCceEEEeecccCccccccccc--cccccchhHHHHHhccCCCCCCCCCCeEEEEEE
Confidence 8899999999999999988752 2479999999999999998764 699999999999999888777778999999999
Q ss_pred EEc--cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEccCCCC
Q 010318 319 KFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 396 (513)
Q Consensus 319 ~~~--~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~ 396 (513)
+|+ +.|++++|+|.+|+|++||.|+++|++...+|++|++++.++++|.||++|+++|+|++..++++||+|++++++
T Consensus 240 v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l~~~~~~ 319 (435)
T 1jny_A 240 VYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIETHHTKMDKAEPGDNIGFNVRGVEKKDIKRGDVVGHPNNP 319 (435)
T ss_dssp EEEETTTEEEEEEECCBSCEETTCEEEEETTTEEEEEEEEEETTEEESEECTTCEEEEEEESSCGGGCCTTCEEECTTSC
T ss_pred EEEeCCCcEEEEEEEecCeEEcCCEEEECCceeEEEEEEEEECCcEEeEEcCCCEEEEEEecCCHHHcCCccEecCCCCC
Confidence 995 789999999999999999999999999999999999999999999999999999999998999999999999888
Q ss_pred cceeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEE
Q 010318 397 VAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSIC 476 (513)
Q Consensus 397 ~~~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~ 476 (513)
+..+..|.|++.|++. +.+|..||++++|+++.+++|+|..|.+.+|.+|++..+++|.+|++|+.+.|+|++.+|+|
T Consensus 320 ~~~~~~f~a~v~~l~~--~~~l~~g~~~~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~ 397 (435)
T 1jny_A 320 PTVADEFTARIIVVWH--PTALANGYTPVLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLC 397 (435)
T ss_dssp CCEESEEEEEEEECCC--SSCBCTTCCCEEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEE
T ss_pred ceEeEEEEEEEEEECC--CCcCCCCCEEEEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEECceEE
Confidence 9999999999999532 37899999999999999999999999999999999988888999999999999999999999
Q ss_pred eeecccccccceEEEEeCCeEEEEEEEEecCCC
Q 010318 477 TEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 509 (513)
Q Consensus 477 ~e~~~~~~~lgrfilr~~g~tva~G~V~~~~~~ 509 (513)
+++|.+++.+|||+||+.|+|+|+|+|+++.+.
T Consensus 398 ~~~~~~~~~~grf~lr~~~~tv~~G~i~~~~~~ 430 (435)
T 1jny_A 398 VEKYNEFPPLGRFAMRDMGKTVGVGIIVDVKPA 430 (435)
T ss_dssp CCCTTTSGGGTEEEEEETTEEEEEEEEEEEEC-
T ss_pred EecCCcCCcCccEEEEECCeEEEEEEEeeecCc
Confidence 999999999999999999999999999998754
No 5
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-75 Score=630.80 Aligned_cols=423 Identities=33% Similarity=0.583 Sum_probs=393.7
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++.++|+++||+|+|||||+++|++..+.+..+++.++++.+.+.|++++.++|++|....++.+|+|++.....+.+.
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
++.++|+|||||++|.+++..+++.+|++||||||+.|.++++|+..+|+++|+.++..++++++|||+||||+ .+|+
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl--~~~~ 321 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN--VDWS 321 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTT--TTTC
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccc--cchh
Confidence 99999999999999999999999999999999999999999888888999999999999999889999999999 6788
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccC-CCCCCCcchHHHHhhhc--cC----CCCCCCCC
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKS-LCPWWNGPCLFEALDRI--EI----TPRDPNGP 311 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~-~~~w~~g~~L~~~l~~l--~~----~~~~~~~~ 311 (513)
+.+++++.+++..+++.+|+.. ..++++|+||++|.|+.++.... .++||.|++|.++|+.+ .. |.+..+.|
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~-~~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p 400 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFE-DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDP 400 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCG-GGCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSC
T ss_pred HHHHHHHHHHHHHHHHhhcccc-cCccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccc
Confidence 8999999999999999988752 25799999999999999986543 38999999999999987 22 33567899
Q ss_pred ceEEEEEEEc-----cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC--------CeeecccCCCCeEEEEecc
Q 010318 312 FRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD--------DNRVRHAGPGENLRIRLSG 378 (513)
Q Consensus 312 ~~~~i~~~~~-----~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~--------~~~v~~a~aG~~v~i~l~~ 378 (513)
++++|.++|+ +.|+|++|+|.+|+|++||.|+++|++..++|++|+++ +.++++|.|||+|+|+|++
T Consensus 401 ~r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l~~ 480 (611)
T 3izq_1 401 FLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRK 480 (611)
T ss_dssp CEEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEEEEEEEECSSCCSCSSSCCCCCCEETTCEEEEEESS
T ss_pred hhhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceEEEEEEEEcccccccccccccceecCCCcceEEeee
Confidence 9999999994 57899999999999999999999999999999999998 4899999999999999999
Q ss_pred CCcccceeeeEEccCCC-CcceeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccce
Q 010318 379 IEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVL 457 (513)
Q Consensus 379 ~~~~~i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~ 457 (513)
++..++++||||+++++ ++..++.|+|++.||+. ..+|..||++++|+|+.+++|+|..|.+++|.+||+. +++|+
T Consensus 481 ~~~~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~~--~~~l~~g~~~~l~~~t~~~~~~v~~l~~~~d~~t~~~-~~~~~ 557 (611)
T 3izq_1 481 AYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFDM--NRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKIR 557 (611)
T ss_dssp CCTTSCCTTCEEBCSTTCSCCCBSCEEEEEEECSC--SSCBCTTEEEEEESSSCEEEEEEEEEEESSSSCCCBC-TTCSC
T ss_pred ccHhhCcceEEccCCCCCCCceeeEEEEEEEEECC--CCCCCCCCEEEEEECCeEeeEEeeeeeeeeccccccc-ccCcc
Confidence 99999999999999997 89999999999999531 3789999999999999999999999999999999887 77899
Q ss_pred eecCCcEEEEEEEE---cceEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010318 458 FVKNGAIVVCRIQV---NNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 507 (513)
Q Consensus 458 ~l~~g~~~~v~~~~---~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~ 507 (513)
+|++|+.+.|+|++ .+|+|+++|.+++.+|||+||+.|+|||+|+|+++.
T Consensus 558 ~l~~~d~a~v~~~~~~~~~pi~~e~~~~~~~~grf~lr~~~~Tva~G~i~~v~ 610 (611)
T 3izq_1 558 HLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEIT 610 (611)
T ss_dssp SSSSCCSEEEEEEESSCSSCBCCCCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred ccCCCCEEEEEEEECCCCCceEEeecccCCCCCcEEEEeCCCEEEEEEEEEec
Confidence 99999999999999 789999999999999999999999999999999875
No 6
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=6.7e-74 Score=610.60 Aligned_cols=424 Identities=33% Similarity=0.568 Sum_probs=364.5
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++.++|+++||+|+|||||+++|++.++.+..+.+.++++.+.+.|++++.++|++|....++.+|+|++.....+.+.
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
++.++|+|||||++|.+++..+++.+|++||||||++|.++++++..+|+++|+.++..++++++|||+||||+ .+|+
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl--~~~~ 187 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN--VDWS 187 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGG--GTTC
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCc--ccch
Confidence 99999999999999999999999999999999999999988888778899999999999998779999999999 6788
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCC-CCCCCcchHHHHhhhc----cC--CCCCCCCC
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSL-CPWWNGPCLFEALDRI----EI--TPRDPNGP 311 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~-~~w~~g~~L~~~l~~l----~~--~~~~~~~~ 311 (513)
+.+++++.+++..+++.+|+.. ..++++|+||++|.|+.++..... ++||.|++|.++|+.+ +. |....+.|
T Consensus 188 ~~~~~~i~~~~~~~l~~~g~~~-~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p 266 (483)
T 3p26_A 188 QQRFEEIKSKLLPYLVDIGFFE-DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDP 266 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCG-GGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSC
T ss_pred HHHHHHHHHHHHHHHHHcCCCc-ccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCc
Confidence 8999999999999999988752 357999999999999998765322 7899999999988876 22 45678899
Q ss_pred ceEEEEEEEc-----cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECC--------eeecccCCCCeEEEEecc
Q 010318 312 FRMPIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD--------NRVRHAGPGENLRIRLSG 378 (513)
Q Consensus 312 ~~~~i~~~~~-----~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~--------~~v~~a~aG~~v~i~l~~ 378 (513)
++++|.++|+ +.|+|++|+|.+|+|++||.|.++|++..++|++|++++ .++++|.|||+|+|+|++
T Consensus 267 ~r~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~~ 346 (483)
T 3p26_A 267 FLFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLRK 346 (483)
T ss_dssp CEEEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEEEEEEEEETTTC-----CCEESCEETTCEEEEEEES
T ss_pred eEEEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeEEEEEEEEcCccccccccccccEECCCCEEEEEEEe
Confidence 9999999994 579999999999999999999999999999999999994 899999999999999999
Q ss_pred CCcccceeeeEEccCCC-CcceeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccce
Q 010318 379 IEEEDILSGFVLSSVAK-PVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVL 457 (513)
Q Consensus 379 ~~~~~i~~G~vl~~~~~-~~~~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~ 457 (513)
++..++++||+|+++++ ++..++.|+|++.||+ +..+|..||++++|+++.+++|+|.+|.+++|.+|++. +++|+
T Consensus 347 ~~~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~--~~~~l~~g~~~~l~~~t~~~~~~v~~i~~~~d~~~~~~-~~~~~ 423 (483)
T 3p26_A 347 AYPEDIQNGDLAASVDYSSIHSAQCFVLELTTFD--MNRPLLPGTPFILFIGVKEQPARIKRLISFIDKGNTAS-KKKIR 423 (483)
T ss_dssp CCGGGCCTTCEEECTTCCCCEECSEEEEEEEECS--CSSCBCTTCEEEEEETTEEEEEEEEEEEEEEEETTEEC-CSCCS
T ss_pred cccccCCceEEEEcCCCCCCceeeEEEEEEEEEC--CCCCCCCCCEEEEEeCceEEEEEEEEEEEEEcCCCccc-ccCcc
Confidence 99999999999999997 8999999999999953 13789999999999999999999999999999999876 67899
Q ss_pred eecCCcEEEEEEEE---cceEEeeecccccccceEEEEeCCeEEEEEEEEecCC
Q 010318 458 FVKNGAIVVCRIQV---NNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 508 (513)
Q Consensus 458 ~l~~g~~~~v~~~~---~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~~ 508 (513)
+|++|+.+.|+|++ .+|+|+|+|.+|+.+|||+||++|+|||+|+|+++..
T Consensus 424 ~l~~~~~~~v~~~~~~~~~p~~~~~~~~~~~~G~f~l~~~~~tv~~G~i~~~~~ 477 (483)
T 3p26_A 424 HLGSKQRAFVEIELIEVKRWIPLLTAHENDRLGRVVLRKDGRTIAAGKISEITQ 477 (483)
T ss_dssp CBCSSCEEEEEEEECSCSSCCEECCTTTCTTTTEEEEEETTEEEEEEEEEEECC
T ss_pred CcCCCCEEEEEEEECCCCCcEEEEecccCccCCCEEEEeCCCEEEEEEEEEecc
Confidence 99999999999999 8899999999999999999999999999999998754
No 7
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-73 Score=619.30 Aligned_cols=416 Identities=33% Similarity=0.601 Sum_probs=327.2
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
..++.++|+++||+|+|||||+++|++.++.+..+.+.++++.+.+.|++++.++|++|..++|+.+|+|++.....+.+
T Consensus 173 ~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 173 NPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred cCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
.++.|+|||||||++|.++|..+++.+|++||||||++|.|+++|...+||++|+.++..+++|++|||+||||+ .+|
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl--~~~ 330 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL--MSW 330 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGG--GTT
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccc--ccc
Confidence 999999999999999999999999999999999999999988888556899999999999999889999999999 678
Q ss_pred hHHHHHHHHhhhHhhh-hhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEE
Q 010318 238 SKERYDEIESKMTPFL-KASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 316 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l-~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i 316 (513)
++.+++.+.+++..++ +.+|+.. ..+++||+||++|.|+.++.....++||.|++|++.|..+.++.+..+.|++++|
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g~~~-~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~pp~~~~~~p~r~~v 409 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVGFKT-SNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVPPEKPYRKPLRLSI 409 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCG-GGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCCCSCTTTSCCEEEE
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCc-cceEEEEEecccCcccccccccccccccchHHHHHHHHhhccccccccccchhee
Confidence 8899999999999999 8888752 3579999999999999987765678999999999999988777788899999999
Q ss_pred EEEEc-cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeec-ccCCCCeEEEEeccCCcccceeeeEEccCC
Q 010318 317 IDKFK-DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVR-HAGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (513)
Q Consensus 317 ~~~~~-~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~-~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (513)
.++|+ +.|++++|+|.+|+|++||.|.++|++..++|++|++++.+++ +|.||++|+|+|.|++..++++||||++++
T Consensus 410 ~~v~~~~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~~V~~i~~~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG~vl~~~~ 489 (592)
T 3mca_A 410 DDVYRSPRSVTVTGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPGDILSNYE 489 (592)
T ss_dssp EEEEEETTEEEEEEEEEESEEETTCEEEETTTTEEEEEEEEECSSSCSCCEEETTCEEEEEESSSCGGGCCTTCEEECSS
T ss_pred eEEEecCCeEEEEEEEeeeeEccCCEEEEccCCceEEEEEEEEcCccCcceecCCCEEEEEEccccccccceEEEeccCC
Confidence 99985 6789999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCcceeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEE-Ecc
Q 010318 395 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQ-VNN 473 (513)
Q Consensus 395 ~~~~~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~-~~~ 473 (513)
.++..+..|+|++.||+. ..+|..||++++|+|+.+++|+| .|.+ ..+++|++|++|+.+.|+|+ +.+
T Consensus 490 ~~~~~~~~f~a~v~~~~~--~~pi~~g~~~~l~~~t~~~~~~i-~l~~--------~~~~~~~~l~~gd~~~v~l~fl~~ 558 (592)
T 3mca_A 490 NPVRRVRSFVAEIQTFDI--HGPILSGSTLVLHLGRTVTSVSL-KIVT--------VNNKRSRHIASRKRALVRISFLDG 558 (592)
T ss_dssp SCCEEESEEEEEEEECSC--SSCEETTEEEEEECSSCEEEEEE-EEEE--------SSSSCCSEECSSCEEEEEEEESSS
T ss_pred CCccccCeEEEEEEEECC--CccCCCCCEEEEEEcCcEEEEEE-EEEe--------ccccchhccCCCCEEEEEEEECCC
Confidence 888999999999999542 27899999999999999999999 7765 12456889999999999999 999
Q ss_pred eEEeeecccccccceEEEEeCCeEEEEEEEEecC
Q 010318 474 SICTEKFADFAQLGRFTLRTEGKTVAVGKVTELP 507 (513)
Q Consensus 474 pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~ 507 (513)
|+|+|+|.+++.+|||+||+.|+|||+|+|+++.
T Consensus 559 p~~~e~~~~~~~~~rfilr~~~~Tv~~G~i~~v~ 592 (592)
T 3mca_A 559 LFPLCLAEECPALGRFILRRSGDTVAAGIVKELC 592 (592)
T ss_dssp CEEECCTTTCHHHHEEEEESSSSEEEEEEEEEEC
T ss_pred cEEEEeccCCCCCCeEEEEECCcEEEEEEEEEcC
Confidence 9999999999999999999999999999999873
No 8
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=4e-68 Score=559.03 Aligned_cols=408 Identities=25% Similarity=0.431 Sum_probs=352.0
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCc--cchhhhhhccCchhhhhcCcEEEeeeEEEE
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR--ESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~--~s~~~~~~~d~~~~e~~~giTi~~~~~~~~ 156 (513)
.++.++|+++||+|+|||||+++|++..+.+..+.+.++.+.....|. .++.+++.+|..++|+++|+|++.+...+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 356789999999999999999999999988877766555554444443 456778899999999999999999999999
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010318 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 157 ~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 236 (513)
+.++.++|+|||||++|.+++.++++.+|++||||||++|.+ .|+++|+.++..++++++|+|+||+|+ .+
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-------~qt~~~l~~~~~~~~~~iIvviNK~Dl--~~ 171 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-------TQTRRHSYIASLLGIKHIVVAINKMDL--NG 171 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCCEEEEEEECTTT--TT
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCeEEEEEEcCcC--Cc
Confidence 999999999999999999999999999999999999999964 699999999999999879999999999 66
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEE
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 316 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i 316 (513)
|++++++.+.+++..+++.+++. ...++++|+||++|.|+.++++. ++||.|++|.++|+.++.+.+..+.|++++|
T Consensus 172 ~~~~~~~~i~~~~~~~~~~~g~~-~~~~~~i~vSA~~g~gi~~~~~~--~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v 248 (434)
T 1zun_B 172 FDERVFESIKADYLKFAEGIAFK-PTTMAFVPMSALKGDNVVNKSER--SPWYAGQSLMEILETVEIASDRNYTDLRFPV 248 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHTTTCC-CSEEEEEECCTTTCTTTSSCCTT--CTTCCSCCTTHHHHHSCCTTCCCSSSCEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHhCCC-ccCceEEEEeccCCCCccccccc--CccccCchHHHHHhcCCCcccCCCCCcEEEE
Confidence 67788888899999999888732 12579999999999999998764 8999999999999999888888889999999
Q ss_pred EEEEc--cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEccCC
Q 010318 317 IDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (513)
Q Consensus 317 ~~~~~--~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (513)
.++++ ..|+.+.|+|.+|+|++||+|.++|++..++|++|++++.++++|.||++|++++++ ..++++||+|++++
T Consensus 249 ~~v~~~~~~~~g~~G~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~--~~~i~~G~~l~~~~ 326 (434)
T 1zun_B 249 QYVNRPNLNFRGFAGTLASGIVHKGDEIVVLPSGKSSRVKSIVTFEGELEQAGPGQAVTLTMED--EIDISRGDLLVHAD 326 (434)
T ss_dssp CEEECSSSSCCEEEEECCBSCEETTCEEEETTTCCEEEEEEEEETTEEESEECTTCEEEEEESS--CCCCCTTCEEEETT
T ss_pred EEEeccCCCceEEEEEEecceEeCCCEEEEecCCeEEEEEEEEEcCcceeEecCCCEEEEEeCC--ccccCCccEEECCC
Confidence 99984 467789999999999999999999999999999999999999999999999999984 45799999999999
Q ss_pred CCcceeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcce
Q 010318 395 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 474 (513)
Q Consensus 395 ~~~~~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~p 474 (513)
++|..+++|+|++.|+ +..+|..||++++|+|+.+++|+|..+.+.+|.++++ ++++++|++|+.+.|+|+|.+|
T Consensus 327 ~~~~~~~~f~a~~~~l---~~~~l~~g~~~~~~~~t~~~~~~v~~~~~~~d~~~~~--~~~~~~l~~~d~~~v~~~~~~p 401 (434)
T 1zun_B 327 NVPQVSDAFDAMLVWM---AEEPMLPGKKYDIKRATSYVPGSIASITHRVDVNTLE--EGPASSLQLNEIGRVKVSLDAP 401 (434)
T ss_dssp SCCCEEEEEEEEEEEC---CSSCBCTTCCEEEECSSCEEEEEEEEEEEEECTTTCC--CCCCSCBCTTCEEEEEEEEEEE
T ss_pred CCCCcccEEEEEEEEe---ccccCCCCCEEEEEEcCCEEEEEEEEEeeeecccccc--ccCccEeCCCCEEEEEEEECCe
Confidence 8889999999999994 4568999999999999999999999999999999987 4668899999999999999999
Q ss_pred EEeeecccccccceEEEEeC--CeEEEEEEEEe
Q 010318 475 ICTEKFADFAQLGRFTLRTE--GKTVAVGKVTE 505 (513)
Q Consensus 475 i~~e~~~~~~~lgrfilr~~--g~tva~G~V~~ 505 (513)
+|+++|.+++.+|||+||+. |+|||+|+|+.
T Consensus 402 ~~~~~~~~~~~~grf~l~d~~~~~tv~~G~i~~ 434 (434)
T 1zun_B 402 IALDGYSSNRTTGAFIVIDRLTNGTVAAGMIIA 434 (434)
T ss_dssp EECCCTTTCTTTTEEEEECTTTCCEEEEEEEEC
T ss_pred EEEcccccCCccceEEEEECCCCcEEEEEEEeC
Confidence 99999999999999999975 89999999973
No 9
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=5.5e-61 Score=499.08 Aligned_cols=378 Identities=29% Similarity=0.441 Sum_probs=325.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
++.++|+++||+|+|||||+++|++... ..|+..+...+.+|....|+++|+|++.....+.+.+
T Consensus 1 k~~~~I~iiG~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 65 (397)
T 1d2e_A 1 KPHVNVGTIGHVDHGKTTLTAAITKILA---------------EGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA 65 (397)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHH---------------HTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS
T ss_pred CCeEEEEEEeCCCCCHHHHHHHHhChhh---------------hcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC
Confidence 3568999999999999999999965321 1233333333457888899999999999988899899
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
+.++|+|||||++|.+++.++++.+|++||||||++|.+ .|+++|+.+++.+++|++|+|+||||+ .+ ++
T Consensus 66 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~e~l~~~~~~~vp~iivviNK~Dl--~~-~~ 135 (397)
T 1d2e_A 66 RHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPM-------PQTREHLLLARQIGVEHVVVYVNKADA--VQ-DS 135 (397)
T ss_dssp CEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCCCEEEEEECGGG--CS-CH
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCCeEEEEEECccc--CC-CH
Confidence 999999999999999999999999999999999999964 699999999999999977899999999 43 35
Q ss_pred HHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCc--chHHHHhhh-ccCCCCCCCCCceEEE
Q 010318 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG--PCLFEALDR-IEITPRDPNGPFRMPI 316 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g--~~L~~~l~~-l~~~~~~~~~~~~~~i 316 (513)
+.++.+.+++..+++.+++. ...++++|+||++|.|.. .++||.| ..|++.|.. ++.|.+..+.|++++|
T Consensus 136 ~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~SA~~g~n~~------~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v 208 (397)
T 1d2e_A 136 EMVELVELEIRELLTEFGYK-GEETPIIVGSALCALEQR------DPELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPV 208 (397)
T ss_dssp HHHHHHHHHHHHHHHHTTSC-TTTSCEEECCHHHHHTTC------CTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCC-cccCcEEEeehhhccccc------CCCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEE
Confidence 56777888888899888874 125799999999999842 2689976 567766654 7777888889999999
Q ss_pred EEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC--cEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEcc
Q 010318 317 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 392 (513)
Q Consensus 317 ~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~--~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 392 (513)
+++| +++|+|++|+|.+|+|++||+|.+.|.+ ..++|++|++++.++++|.|||+|+++|+|++..++++||+|++
T Consensus 209 ~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~ 288 (397)
T 1d2e_A 209 ESVYSIPGRGTVVTGTLERGILKKGDECEFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAK 288 (397)
T ss_dssp CEEEEETTTEEEEEEECCBSEEETTCEEEEEETTEEEEEEEEEEEETTEEESEEETTCEEEEEESSCCGGGCCTTCEEES
T ss_pred EEEEEeCCceEEEEEEEeeceEeCCCEEEEeCCCCCeEEEEEEEEECCcccCEecCCCceEEEecccchhccCceeEEeC
Confidence 9998 5899999999999999999999999975 78999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeEEEEEEEEecccc---cccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEE
Q 010318 393 VAKPVAAVTEFIAQLQILELLD---NAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRI 469 (513)
Q Consensus 393 ~~~~~~~~~~f~a~i~~~~~l~---~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~ 469 (513)
++ ++.++++|+|++.||+... +.+|..||++++|+++.+++|+|. +. + .+.+|++|+.+.|+|
T Consensus 289 ~~-~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-l~------~------~~~~l~~~~~~~v~~ 354 (397)
T 1d2e_A 289 PG-SIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRII-LP------P------GKELAMPGEDLKLTL 354 (397)
T ss_dssp TT-SCCCEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------S------SCCCBCTTCEEEEEE
T ss_pred CC-CCCcccEEEEEEEEeccccccCccccCCCCEEEEEEecCEEEEEEE-Ec------C------CcccccCCCEEEEEE
Confidence 87 5678999999999965321 258999999999999999999987 31 1 256799999999999
Q ss_pred EEcceEEeeecccccccceEEEEeCCeEEEEEEEEecCCC
Q 010318 470 QVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 509 (513)
Q Consensus 470 ~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~~~ 509 (513)
+|.+|+|++++ +||+||+.++|+|+|+|+++.+.
T Consensus 355 ~~~~p~~~~~~------~r~~lr~~~~ti~~G~i~~~~~~ 388 (397)
T 1d2e_A 355 ILRQPMILEKG------QRFTLRDGNRTIGTGLVTDTPAM 388 (397)
T ss_dssp EEEEEECCCTT------CEEEEEETTEEEEEEEEEECCCC
T ss_pred EECCeEEEccC------CeEEEEeCCeEEEEEEEeecccC
Confidence 99999999986 69999999999999999998764
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=1.4e-60 Score=497.54 Aligned_cols=384 Identities=29% Similarity=0.458 Sum_probs=326.0
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCc-cchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSR-ESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~-~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
.++.++|+++||+|+|||||+++|++... +.|+ ..+...+.+|....|+.+|+|++.....+.+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~---------------~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~ 72 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAA---------------AENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHH---------------HSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhh---------------hcCccccccchhhccCCHHHHHcCCCEEeeeeEecc
Confidence 45679999999999999999999965311 1222 1222233688899999999999998888999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
.++.++|+|||||++|.+++.++++.+|++|||||+++|.+ .|+++|+.++..+++|++|+++||||+. +
T Consensus 73 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~~~l~~~~~~~ip~iivviNK~Dl~--~- 142 (405)
T 2c78_A 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-------PQTREHILLARQVGVPYIVVFMNKVDMV--D- 142 (405)
T ss_dssp SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-------HHHHHHHHHHHHTTCCCEEEEEECGGGC--C-
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-------HHHHHHHHHHHHcCCCEEEEEEECcccc--C-
Confidence 99999999999999999999999999999999999999864 5999999999999999888999999994 3
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc---cCCCCCCCc-chHHHHhhh-ccCCCCCCCCCc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD---KSLCPWWNG-PCLFEALDR-IEITPRDPNGPF 312 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~---~~~~~w~~g-~~L~~~l~~-l~~~~~~~~~~~ 312 (513)
+++.++.+.+++..+++.+++. ...++++++||++|.|+.+... ...++||.+ ..|++.|.. ++.|.+..+.|+
T Consensus 143 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~ 221 (405)
T 2c78_A 143 DPELLDLVEMEVRDLLNQYEFP-GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPF 221 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSC-TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhccc-ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCc
Confidence 3556777788888889888863 1247999999999999654321 123678865 456666654 777778889999
Q ss_pred eEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC---cEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceee
Q 010318 313 RMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 387 (513)
Q Consensus 313 ~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~---~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G 387 (513)
+++|.++| +++|++++|+|.+|+|++||+|.++|.+ ..++|++|++++.++++|.|||+|++.|+|++..++++|
T Consensus 222 ~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~~~~~~~~~~~V~~i~~~~~~~~~a~aG~~v~~~l~g~~~~~i~~G 301 (405)
T 2c78_A 222 LMPVEDVFTITGRGTVATGRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVERG 301 (405)
T ss_dssp EEECCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSSCEEEEEEEEEETTEEESEEETTCEEEEEESSCCTTTCCTT
T ss_pred EEEEEEEEEcCCCceEEEEEEecccccCCCEEEEeCCCCCeeeEEEEEEEECCcccCEEcCCCEEEEEECCCcHhhcCce
Confidence 99999998 5899999999999999999999999987 689999999999999999999999999999999999999
Q ss_pred eEEccCCCCcceeeEEEEEEEEeccc---ccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcE
Q 010318 388 FVLSSVAKPVAAVTEFIAQLQILELL---DNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAI 464 (513)
Q Consensus 388 ~vl~~~~~~~~~~~~f~a~i~~~~~l---~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~ 464 (513)
|+|++++ ++.+++.|+|++.||+.. ++.+|..||++++|+++.+++|+|. +. + .+.++++|+.
T Consensus 302 ~~l~~~~-~~~~~~~f~a~v~~l~~~~~~~~~~~~~g~~~~~~~~t~~~~~~i~-~~------~------~~~~l~~~~~ 367 (405)
T 2c78_A 302 QVLAKPG-SITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQ-LP------P------GVEMVMPGDN 367 (405)
T ss_dssp CEEESTT-SSEEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEEETTEEEEEEEE-CC------T------TCCCBCTTCE
T ss_pred EEEEcCC-CCceeEEEEEEEEEecccCCCccccccCCceEEEEEcccEEEEEEE-Ec------c------CccccCCCCE
Confidence 9999988 578899999999997532 1258999999999999999999987 31 1 2567999999
Q ss_pred EEEEEEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecCC
Q 010318 465 VVCRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPT 508 (513)
Q Consensus 465 ~~v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~~ 508 (513)
+.|+|+|.+|+|+++| +||+||+.|+|+|+|+|+++.+
T Consensus 368 ~~v~~~~~~p~~~~~~------~rf~lr~~~~ti~~G~i~~~~~ 405 (405)
T 2c78_A 368 VTFTVELIKPVALEEG------LRFAIREGGRTVGAGVVTKILE 405 (405)
T ss_dssp EEEEEEEEEEEEECTT------CEEEEEETTEEEEEEEEEEECC
T ss_pred EEEEEEECceEEEccC------CEEEEEcCCeEEEEEEEEeccC
Confidence 9999999999999987 7999999999999999998753
No 11
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=1.5e-56 Score=500.93 Aligned_cols=380 Identities=29% Similarity=0.420 Sum_probs=309.1
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
..++.++|+++||+|+|||||+++|++... +.|+..+...+.+|..++|+.+|+|++.....+.+
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~---------------~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~ 356 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLA---------------KTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT 356 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHH---------------HHSCC---------------------CCSCEEEEC
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhc---------------cccccccccccccccccccccCceeEEEEEEEEcC
Confidence 456789999999999999999999965321 11222222223678888999999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
.++.++|+|||||++|.+++.++++.+|++|||||+++|.+ .||++|+.++..+++|++|||+||||+. +
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~-------~QTrEhL~ll~~lgIP~IIVVINKiDLv--~- 426 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPM-------PQTREHILLGRQVGVPYIIVFLNKCDMV--D- 426 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC-------TTHHHHHHHHHHHTCSCEEEEEECCTTC--C-
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCc-------HHHHHHHHHHHHcCCCeEEEEEeecccc--c-
Confidence 99999999999999999999999999999999999999965 6999999999999999888999999994 3
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCc-chHHHHhhh-ccCCCCCCCCCceEE
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNG-PCLFEALDR-IEITPRDPNGPFRMP 315 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g-~~L~~~l~~-l~~~~~~~~~~~~~~ 315 (513)
++++++.+.+++..+++.+++. ...++++|+||++|.+- ..+||.| ..|++.|.. ++.|.+..+.|++++
T Consensus 427 d~e~le~i~eEi~elLk~~G~~-~~~vp~IpvSAktG~ng-------~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~p 498 (1289)
T 3avx_A 427 DEELLELVEMEVRELLSQYDFP-GDDTPIVRGSALKALEG-------DAEWEAKILELAGFLDSYIPEPERAIDKPFLLP 498 (1289)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSC-TTTCCEEECCSTTTTTC-------CHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEE
T ss_pred chhhHHHHHHHHHHHHHhcccc-ccceeEEEEEeccCCCC-------CccccccchhhHhHHhhhcCCCccccccceeee
Confidence 4566777888899999988874 23579999999999541 1357765 346665554 677777788999999
Q ss_pred EEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCC--cEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEc
Q 010318 316 IIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNK--AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLS 391 (513)
Q Consensus 316 i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~--~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~ 391 (513)
|+++| +++|+|++|+|.+|+|++||+|.++|.+ ..++|++|++++.++++|.|||+|+++|+|++..++++||+|+
T Consensus 499 Id~Vf~i~G~GtVvtGrV~sGtLkvGD~V~I~ps~~~~~~kVksI~~~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~ 578 (1289)
T 3avx_A 499 IEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLA 578 (1289)
T ss_dssp CCEEEEETTTEEEEEEECCBSEEETTCEEEEESSSSCEEEEEEEEECSSCEESEEETTCEEEEEESSCCGGGCCTTCEEE
T ss_pred ccccccccCCcEEEEEEEeccEEecCCEEEEecCCCceeEEEEEEeecCceeeEEecCCcceeEeeecchhcCCcccEEe
Confidence 99998 5899999999999999999999999988 7899999999999999999999999999999999999999999
Q ss_pred cCCCCcceeeEEEEEEEEeccc---ccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEE
Q 010318 392 SVAKPVAAVTEFIAQLQILELL---DNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCR 468 (513)
Q Consensus 392 ~~~~~~~~~~~f~a~i~~~~~l---~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~ 468 (513)
+++. +.+++.|+|++.|++.. ++.++..||++++|+++.+++|+|. +. ..+.+|++|+.+.|+
T Consensus 579 ~~~~-~~~~~~F~A~V~~L~~~egg~~~pi~~G~~p~l~igT~~vtg~I~-L~------------~~~~~L~~Gd~a~V~ 644 (1289)
T 3avx_A 579 KPGT-IKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIE-LP------------EGVEMVMPGDNIKMV 644 (1289)
T ss_dssp STTS-CCEEEEEEEEEEECCGGGTSCSSCBCTTCCCEEECSSCEEEEEEE-CC------------TTCCCBCTTCCCEEE
T ss_pred cCCC-CccceeEEEEEEEEccccccccccccCCCceEEEEeeeeEEEEEE-EC------------CCcccccCCCEEEEE
Confidence 9874 57899999999997532 1257999999999999999999987 21 125679999999999
Q ss_pred EEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecCCCC
Q 010318 469 IQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTVS 510 (513)
Q Consensus 469 ~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~~~~ 510 (513)
|+|.+|+|++++ +||+||+.|+|||+|+|+++.+..
T Consensus 645 L~l~~Pi~ve~g------~RFiLRd~grTIG~G~V~~v~~~~ 680 (1289)
T 3avx_A 645 VTLIHPIAMDDG------LRFAIREGGRTVGAGVVAKVLSGA 680 (1289)
T ss_dssp EEEEEEEECCTT------CEEEEEETTEEEEEEEEEEECCCC
T ss_pred EEECceEEEccC------CEEEEEeCCeEEEEEEEeeechhh
Confidence 999999999986 799999999999999999987654
No 12
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=4.6e-58 Score=487.17 Aligned_cols=370 Identities=23% Similarity=0.394 Sum_probs=303.4
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
..++.++|+++||+|+|||||+++|.... ....+|....|+++|+|++.++..+.+
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~------------------------~~~~~d~~~~e~~~GiTi~~~~~~~~~ 70 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIA------------------------STSAHDKLPESQKRGITIDIGFSAFKL 70 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------------------------------CCCEEEE
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCC------------------------cccccccccccccCccEEecceEEEEE
Confidence 44678999999999999999999994221 123466677889999999999999999
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~ 237 (513)
+++.++|+|||||++|.+++.++++.+|++||||||++|.+ +||++|+.++..+++| +|+|+||||+ .+
T Consensus 71 ~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~-------~qt~e~l~~~~~~~ip-~IvviNK~Dl--~~- 139 (482)
T 1wb1_A 71 ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPK-------TQTGEHMLILDHFNIP-IIVVITKSDN--AG- 139 (482)
T ss_dssp TTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSC-------HHHHHHHHHHHHTTCC-BCEEEECTTS--SC-
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCcc-------HHHHHHHHHHHHcCCC-EEEEEECCCc--cc-
Confidence 99999999999999999999999999999999999999854 6999999999999999 5899999999 42
Q ss_pred hHHHHHHHHhhhHhhhhhc-cCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEE
Q 010318 238 SKERYDEIESKMTPFLKAS-GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPI 316 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~-g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i 316 (513)
+++++.+.+++..+++.. ++. .++++|+||++|.|+.+|++. |.+.+. ++...+..+.|++++|
T Consensus 140 -~~~~~~~~~~l~~~l~~~~~~~---~~~ii~vSA~~g~gI~~L~~~----------L~~~i~-~~~~~~~~~~~~~~~v 204 (482)
T 1wb1_A 140 -TEEIKRTEMIMKSILQSTHNLK---NSSIIPISAKTGFGVDELKNL----------IITTLN-NAEIIRNTESYFKMPL 204 (482)
T ss_dssp -HHHHHHHHHHHHHHHHHSSSGG---GCCEEECCTTTCTTHHHHHHH----------HHHHHH-HSCCCCCSSSCCBCBC
T ss_pred -chhHHHHHHHHHHHHhhhcccc---cceEEEEECcCCCCHHHHHHH----------HHHhhc-Cccccccccccccccc
Confidence 456778888888888877 664 578999999999999985432 333222 2322566778999999
Q ss_pred EEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEE-ccC
Q 010318 317 IDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVL-SSV 393 (513)
Q Consensus 317 ~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl-~~~ 393 (513)
+++| ++.|+|++|+|.+|.|++||.|.++|.+..++|++|+++++++++|.|||+|++.|+|++..++++||+| +++
T Consensus 205 ~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~~~~ 284 (482)
T 1wb1_A 205 DHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILTSKD 284 (482)
T ss_dssp SCEECCSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCCCTT
T ss_pred eeEEEecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceEecCC
Confidence 9998 5889999999999999999999999999999999999999999999999999999999988899999999 555
Q ss_pred CCCcceeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEE-EEeecCCCccccccceeecCCcEEEEEEEEc
Q 010318 394 AKPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELL-HQIDLKTKKPMKKKVLFVKNGAIVVCRIQVN 472 (513)
Q Consensus 394 ~~~~~~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~-~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~ 472 (513)
+ ++++++.|+|++.|++. ...+|..||++.+|+++.+++|+|..+. +.+|.+++.. .+++|++|+.+.|+|+|.
T Consensus 285 ~-~~~~~~~~~a~v~~l~~-~~~~l~~g~~~~l~~~t~~~~~~v~~~~~~~~d~~~~~~---~~~~l~~g~~~~v~l~~~ 359 (482)
T 1wb1_A 285 T-KLQTVDKIVAKIKISDI-FKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENI---ILNEVISGNEXYXAFELE 359 (482)
T ss_dssp C-CCCCEEEEEECCCCCSS-CCSCCCSSCEEEEEETTEEEEEEEEEEEECCSSSCCCEE---ECCSSCCSSCCCEEEEEE
T ss_pred C-CCceeeEEEEEEEEecc-CCcccCCCCEEEEEEcccEEEEEEEEEeccccccccccc---cchhhcCCCEEEEEEEcC
Confidence 4 67788999999999542 1268999999999999999999999988 7888877542 256799999999999999
Q ss_pred ceEEeeecccccccceEEEEe---C---CeEEEEEEEEecCC
Q 010318 473 NSICTEKFADFAQLGRFTLRT---E---GKTVAVGKVTELPT 508 (513)
Q Consensus 473 ~pi~~e~~~~~~~lgrfilr~---~---g~tva~G~V~~~~~ 508 (513)
+|+|++++ +||+||+ . ++|+|+|+|+++.+
T Consensus 360 ~pv~~~~~------~rfilr~~~~~~~~~~tvg~G~v~~~~~ 395 (482)
T 1wb1_A 360 EKVLAEVG------DRVLITRLDLPPTTLRIXGHGLIEEFKP 395 (482)
T ss_dssp EEECCCSS------CCCBEECTTSCTTSCCCCCBCCEEECCC
T ss_pred ccEEecCC------CeEEEEECCCCccCceEeeEEEEEeccc
Confidence 99999875 7999998 4 89999999998743
No 13
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=1.3e-54 Score=445.40 Aligned_cols=336 Identities=20% Similarity=0.299 Sum_probs=285.5
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
+|+++||+|+|||||+++|+ ++|+|++.+...++++++.++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------------------------------------~~giTi~~~~~~~~~~~~~i~ 63 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------------------------------------KKGTSSDITMYNNDKEGRNMV 63 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------------------------------------EEEEESSSEEEEECSSSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHH---------------------------------------hCCEEEEeeEEEEecCCeEEE
Confidence 99999999999999999993 289999999999999999999
Q ss_pred EEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe-eccCCCCCchHHHH
Q 010318 164 ILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERY 242 (513)
Q Consensus 164 liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN-K~D~~~~~~~~~~~ 242 (513)
|+|||||++|.++++++++.+|++||||| ..|.+ +||++|+.++..+++|.+|+++| |||+ .. ..+
T Consensus 64 iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~-------~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~----~~~ 130 (370)
T 2elf_A 64 FVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLD-------AHTGECIIALDLLGFKHGIIALTRSDST-HM----HAI 130 (370)
T ss_dssp EEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCC-------HHHHHHHHHHHHTTCCEEEEEECCGGGS-CH----HHH
T ss_pred EEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCc-------HHHHHHHHHHHHcCCCeEEEEEEeccCC-CH----HHH
Confidence 99999999999999999999999999999 88854 69999999999999996589999 9998 32 345
Q ss_pred HHHHhhhHhhhhhccCcccCCeeEEE--eeccc---ccccccccccCCCCCCCcchHHHHhhhccCCCCC-CCCCceEEE
Q 010318 243 DEIESKMTPFLKASGYNVKKDVQFLP--ISGLM---GLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD-PNGPFRMPI 316 (513)
Q Consensus 243 ~~i~~~l~~~l~~~g~~~~~~~~iip--iSa~~---g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~-~~~~~~~~i 316 (513)
+++.+++..+++..++. .++++| +||++ |.|+.++++. |.+.+.....+... ...|++++|
T Consensus 131 ~~~~~~i~~~l~~~~~~---~~~ii~~~~SA~~~~~g~gi~~L~~~----------l~~~~~~~~~~~~~~~~~p~r~~v 197 (370)
T 2elf_A 131 DELKAKLKVITSGTVLQ---DWECISLNTNKSAKNPFEGVDELKAR----------INEVAEKIEAENAELNSLPARIFI 197 (370)
T ss_dssp HHHHHHHHHHTTTSTTT---TCEEEECCCCTTSSSTTTTHHHHHHH----------HHHHHHHHHHHHHHGGGSCCEEEE
T ss_pred HHHHHHHHHHHHhcCCC---ceEEEecccccccCcCCCCHHHHHHH----------HHhhccccccCCcccccccccccc
Confidence 56677777788776653 579999 99999 9999886542 44444332111122 456689999
Q ss_pred EEEEc--cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeeeEEccCC
Q 010318 317 IDKFK--DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVA 394 (513)
Q Consensus 317 ~~~~~--~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~ 394 (513)
.++|+ +.|++++|+|.+|+|++||+|++.|.+...+|++|++++.++++|.|||+|+++|+|++..++++||+|++
T Consensus 198 ~~vf~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~-- 275 (370)
T 2elf_A 198 DHAFNVTGKGCVVLGVVKQGISKDKDKTKIFPLDRDIEIRSIQSHDVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD-- 275 (370)
T ss_dssp EEEECCC---CEEEEEEEESEEETTCEEEEETTTEEEEEEEEEETTEEESEEETTCEEEEEEESCCGGGCCTTCEEES--
T ss_pred eeEEEcCCCceEEEEEEECCEEeeCCEEEECCCCcEEEEeEEEECCCCccEEcCCCcceEEEeccCHHHcCCceEEEC--
Confidence 99994 78999999999999999999999999999999999999999999999999999999998899999999998
Q ss_pred CCcceeeEEEEEEEEecccccccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcce
Q 010318 395 KPVAAVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNS 474 (513)
Q Consensus 395 ~~~~~~~~f~a~i~~~~~l~~~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~p 474 (513)
.+ +.+++|+|++.|++. ..+|..||++.+|+++.+++|+|..|.. |.+ ++ ..+++|+.+.|+|+|.+|
T Consensus 276 ~~-~~~~~f~a~v~~l~~--~~~i~~g~~~~~~~~t~~~~~~v~~l~~--d~~-~~------~~~~~g~~~~v~l~~~~p 343 (370)
T 2elf_A 276 KE-IVTTDYTLECTVSKF--TKKIEPASVLHLFVGLQSEPVRVEKILV--DGN-EV------EEAKPGSTCVLELSGNKK 343 (370)
T ss_dssp CC-EEEEEEEEEEEECTT--SCCBCTTCEEEEEETTEEEEEEEEEEEE--TTE-EE------SCBCTTCEEEEEEEEEEE
T ss_pred CC-ceeEEEEEEEEEECC--CCCCCCCCEEEEEEcCCEEEEEEEEEEe--CCC-cc------eeecCCCEEEEEEEECcE
Confidence 45 889999999999542 3789999999999999999999998753 322 21 235699999999999999
Q ss_pred EEeeecccccccceEEEEeCC---eEEEEEEEE
Q 010318 475 ICTEKFADFAQLGRFTLRTEG---KTVAVGKVT 504 (513)
Q Consensus 475 i~~e~~~~~~~lgrfilr~~g---~tva~G~V~ 504 (513)
+|+++|. ||+||+.+ +|+|+|+|.
T Consensus 344 i~~~~~~------rfilr~~~~~~~tig~G~~~ 370 (370)
T 2elf_A 344 LAYSKQD------RFLLANLDLTQRFAAYGFSK 370 (370)
T ss_dssp EEECTTS------CEEEECTTSSSCEEEEEEEC
T ss_pred EEEeCCC------EEEEEECCCCCEEEEEEEeC
Confidence 9999884 99999965 799999873
No 14
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=9.1e-53 Score=439.30 Aligned_cols=343 Identities=24% Similarity=0.394 Sum_probs=283.8
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++.++|+++||+|||||||+++|+ |. ..+...+|+++|+|++.++..+.+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~---g~-------------------------~~~~~~~e~~~giTi~~~~~~~~~~ 58 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALT---GV-------------------------WTDTHSEELRRGITIKIGFADAEIR 58 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHH---TC-------------------------CCC--CGGGGSCSSSCCEEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHh---CC-------------------------ccccChhhhcCCcEEEEeeeeeecc
Confidence 4677999999999999999999994 21 1344557888999998877655441
Q ss_pred -----------------------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH
Q 010318 159 -----------------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 215 (513)
Q Consensus 159 -----------------------~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~ 215 (513)
.+.++|+|||||++|.++++++++.+|++||||||++|. ..+||++|+.++
T Consensus 59 ~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~------~~~qt~e~l~~~ 132 (410)
T 1kk1_A 59 RCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPC------PRPQTREHLMAL 132 (410)
T ss_dssp ECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCS------SCHHHHHHHHHH
T ss_pred cccccccccccccccccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCC------CChhHHHHHHHH
Confidence 278999999999999999999999999999999999984 137999999999
Q ss_pred HHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHH
Q 010318 216 KTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLF 295 (513)
Q Consensus 216 ~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~ 295 (513)
..++++++|+|+||||+...+ ...+..+++..+++.... ..++++++||++|.|+.+ |+
T Consensus 133 ~~~~~~~iivviNK~Dl~~~~----~~~~~~~~i~~~l~~~~~---~~~~~i~vSA~~g~gi~~--------------L~ 191 (410)
T 1kk1_A 133 QIIGQKNIIIAQNKIELVDKE----KALENYRQIKEFIEGTVA---ENAPIIPISALHGANIDV--------------LV 191 (410)
T ss_dssp HHHTCCCEEEEEECGGGSCHH----HHHHHHHHHHHHHTTSTT---TTCCEEECBTTTTBSHHH--------------HH
T ss_pred HHcCCCcEEEEEECccCCCHH----HHHHHHHHHHHHHHhcCc---CCCeEEEeeCCCCCCHHH--------------HH
Confidence 999987799999999994322 223344455556654322 257999999999999987 45
Q ss_pred HHhh-hccCCCCCCCCCceEEEEEEEc----------cCCeEEEEEEEeeeecCCCEEEEecCCc------------EEE
Q 010318 296 EALD-RIEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPNKA------------QVK 352 (513)
Q Consensus 296 ~~l~-~l~~~~~~~~~~~~~~i~~~~~----------~~G~vv~g~v~sG~l~~gd~v~~~p~~~------------~~~ 352 (513)
+.|. .++.|.+..+.|++++|.++|+ .+|++++|+|.+|+|++||+|.++|++. .++
T Consensus 192 ~~l~~~~~~p~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~ 271 (410)
T 1kk1_A 192 KAIEDFIPTPKRDPNKPPKMLVLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTE 271 (410)
T ss_dssp HHHHHHSCCCCCCTTSCCEEEEEEEECCSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHhCCCCccccCCCcEEEEEEEEeccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeE
Confidence 5454 4777777788999999999883 2688999999999999999999999752 689
Q ss_pred EEEEEECCeeecccCCCCeEEEEec---cCCcccceeeeEEccCCCCcceeeEEEEEEEEecccc-------cccccCCc
Q 010318 353 VLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD-------NAIFTAGY 422 (513)
Q Consensus 353 V~~i~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~l~-------~~~i~~G~ 422 (513)
|++|++++.++++|.|||+|++.++ ++...++++||||++++.+++.++.|+|++.||+... ..+|..||
T Consensus 272 v~~i~~~~~~v~~a~aG~~v~~~~~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~ 351 (410)
T 1kk1_A 272 IVSLQAGGQFVEEAYPGGLVGVGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQELKVEPIKRKE 351 (410)
T ss_dssp EEEEEETTEEESEECSSSCEEEEESSCGGGTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC--CCCCSCCCCCTTC
T ss_pred EEEEEECCeEecEEcCCCEEEEEEecCcccchhhccceeEEecCCCCCceeEEEEEEEEEEecccccccccccccCCCCC
Confidence 9999999999999999999999886 5666889999999999988888999999999965320 26899999
Q ss_pred EEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEEeeecccccccceEEEEe----CCeEE
Q 010318 423 KAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRT----EGKTV 498 (513)
Q Consensus 423 ~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~~~~~~lgrfilr~----~g~tv 498 (513)
++.+|+++.+++|+|..+. ++ .|+|+|.+|+|++++ .||+||+ .++|+
T Consensus 352 ~~~~~~~t~~~~~~v~~~~--------------------~~--~~~l~~~~p~~~~~~------~~~~~~~~~~~~~r~i 403 (410)
T 1kk1_A 352 VLLLNVGTARTMGLVTGLG--------------------KD--EIEVKLQIPVCAEPG------DRVAISRQIGSRWRLI 403 (410)
T ss_dssp EEEEEETTEEEEEEEEEEE--------------------TT--EEEEEEEEEEECCTT------CEEEEEEEETTEEEEE
T ss_pred EEEEEEcCCEEeEEEEEec--------------------CC--EEEEEeCCcEEecCC------CEEEEEEecCCCcEEE
Confidence 9999999999999998652 12 688899999999987 5999998 68999
Q ss_pred EEEEEE
Q 010318 499 AVGKVT 504 (513)
Q Consensus 499 a~G~V~ 504 (513)
|+|.|+
T Consensus 404 g~G~i~ 409 (410)
T 1kk1_A 404 GYGIIK 409 (410)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 999997
No 15
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=4.5e-53 Score=441.21 Aligned_cols=343 Identities=25% Similarity=0.412 Sum_probs=273.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe-
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 157 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~- 157 (513)
.++.++|+++||+|||||||+++|. |. ..+...+|+++|+|++.++..+..
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~---g~-------------------------~~~~~~~e~~~giTi~~~~~~~~~~ 56 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALT---GV-------------------------WTDRHSEELRRGISIRLGYADCEIR 56 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHH---SC-------------------------CCCC-------CCCCCCEEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHh---CC-------------------------ccccCcccccCCcEEEecccccccc
Confidence 4567999999999999999999984 21 133445777899999887655433
Q ss_pred --------------C--------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH
Q 010318 158 --------------E--------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA 215 (513)
Q Consensus 158 --------------~--------~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~ 215 (513)
. .+.++|+|||||++|.++++++++.+|++||||||++|. ..+||++|+.++
T Consensus 57 ~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~------~~~qt~e~l~~~ 130 (408)
T 1s0u_A 57 KCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPC------PQPQTKEHLMAL 130 (408)
T ss_dssp ECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCS------SCHHHHHHHHHH
T ss_pred cccccccccccccccccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCC------CCchhHHHHHHH
Confidence 1 278999999999999999999999999999999999984 137999999999
Q ss_pred HHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHH
Q 010318 216 KTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLF 295 (513)
Q Consensus 216 ~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~ 295 (513)
..++++++|||+||+|+...++....++++ ..+++.... ..++++|+||++|.|+.+ |+
T Consensus 131 ~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i----~~~l~~~~~---~~~~~i~vSA~~g~gi~~--------------L~ 189 (408)
T 1s0u_A 131 EILGIDKIIIVQNKIDLVDEKQAEENYEQI----KEFVKGTIA---ENAPIIPISAHHEANIDV--------------LL 189 (408)
T ss_dssp HHTTCCCEEEEEECTTSSCTTTTTTHHHHH----HHHHTTSTT---TTCCEEEC------CHHH--------------HH
T ss_pred HHcCCCeEEEEEEccCCCCHHHHHHHHHHH----HHHHhhcCC---CCCeEEEeeCCCCCCHHH--------------HH
Confidence 999986699999999995544333344444 444544322 257899999999999987 45
Q ss_pred HHhh-hccCCCCCCCCCceEEEEEEEc----------cCCeEEEEEEEeeeecCCCEEEEecCCc------------EEE
Q 010318 296 EALD-RIEITPRDPNGPFRMPIIDKFK----------DMGTVVMGKVESGSVREGDSLLVMPNKA------------QVK 352 (513)
Q Consensus 296 ~~l~-~l~~~~~~~~~~~~~~i~~~~~----------~~G~vv~g~v~sG~l~~gd~v~~~p~~~------------~~~ 352 (513)
+.|. .++.+.+..+.|++++|.++|+ .+|+|++|+|.+|+|++||.|.++|+.. .++
T Consensus 190 ~~l~~~i~~~~~~~~~~~~~~v~~~f~v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~ 269 (408)
T 1s0u_A 190 KAIQDFIPTPKRDPDATPRMYVARSFDINKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTK 269 (408)
T ss_dssp HHHHHHSCCCCCCTTSCCEEEEEEEECCCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEE
T ss_pred HHHHHhCCCCcccCCCCeEEEEEEEEeecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeE
Confidence 5454 4777778889999999999983 2688999999999999999999999742 689
Q ss_pred EEEEEECCeeecccCCCCeEEEEec---cCCcccceeeeEEccCCCCcceeeEEEEEEEEecccc-------cccccCCc
Q 010318 353 VLAIYCDDNRVRHAGPGENLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELLD-------NAIFTAGY 422 (513)
Q Consensus 353 V~~i~~~~~~v~~a~aG~~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~l~-------~~~i~~G~ 422 (513)
|++|+++++++++|.||++|++++. +++..++++||||++++.+++.++.|+|++.||+... +.+|..||
T Consensus 270 v~~i~~~~~~~~~a~~G~~v~~~~~~~~~~~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~g~~~~~~~~~l~~g~ 349 (408)
T 1s0u_A 270 IVSLAAGNTILRKAHPGGLIGVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGE 349 (408)
T ss_dssp CCEEEETTEEESEECSSSCEEEECSSCGGGTGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCSSCSSTTCCCCCCTTC
T ss_pred EEEEEECCEEcCEEeCCCeEEEEeccCcccchhhccceeEEECCCCCCceeEEEEEEEEEEeccccccccccccCCCCCC
Confidence 9999999999999999999999986 6778899999999999988888999999999965320 26899999
Q ss_pred EEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEEEEEEEcceEEeeecccccccceEEEEe----CCeEE
Q 010318 423 KAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLGRFTLRT----EGKTV 498 (513)
Q Consensus 423 ~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~~~~~~lgrfilr~----~g~tv 498 (513)
++.+|+++.+++|+|..+.. + .|+|+|.+|+|++.+ .||+||+ .++|+
T Consensus 350 ~~~~~~~t~~~~~~v~~~~~--------------------~--~~~~~~~~p~~~~~~------~~~~~~~~~~~~~r~i 401 (408)
T 1s0u_A 350 VLMLNIGTATTAGVITSARG--------------------D--IADIKLKLPICAEIG------DRVAISRRVGSRWRLI 401 (408)
T ss_dssp EEEEEETTEEEEEEEEEEET--------------------T--EEEEEEEEEEECCTT------CEEEEEEECSSSEEEE
T ss_pred EEEEEEcCCEEEEEEEEecC--------------------C--EEEEEECCcEEecCC------CEEEEEEecCCCeEEE
Confidence 99999999999999986521 2 688899999999987 5999998 58999
Q ss_pred EEEEEE
Q 010318 499 AVGKVT 504 (513)
Q Consensus 499 a~G~V~ 504 (513)
|+|.|+
T Consensus 402 g~G~i~ 407 (408)
T 1s0u_A 402 GYGTIE 407 (408)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999996
No 16
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=1.1e-49 Score=414.85 Aligned_cols=355 Identities=22% Similarity=0.293 Sum_probs=276.6
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEE---
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHF--- 155 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~--- 155 (513)
.++.++|+++||+|+|||||+++|+....... .| +..............++++.+.....+
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-------------LG---YAETNIGVCESCKKPEAYVTEPSCKSCGSD 68 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-------------SE---EEEEEEEECTTSCTTTTEESSSCCGGGTCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccc-------------cC---ccccceeeccccccccceeccccccccccc
Confidence 45679999999999999999999953211100 00 000000000111122333332211111
Q ss_pred --EeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCC
Q 010318 156 --ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 233 (513)
Q Consensus 156 --~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 233 (513)
....+.++|+|||||++|.+++..+++.+|++||||||+++.. .+|+++|+.++..++++++|+|+||+|+.
T Consensus 69 ~~~~~~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~------~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 142 (403)
T 3sjy_A 69 DEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP------QPQTREHFVALGIIGVKNLIIVQNKVDVV 142 (403)
T ss_dssp SCCEEEEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSS------CHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred ccccccceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCC------cHHHHHHHHHHHHcCCCCEEEEEECcccc
Confidence 1223789999999999999999999999999999999999851 36999999999999986699999999994
Q ss_pred CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhh-hccCCCCCCCCCc
Q 010318 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALD-RIEITPRDPNGPF 312 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~-~l~~~~~~~~~~~ 312 (513)
+ .....+..+++..+++..+.. .++++++||++|.|+.+ |++.|. .++.+.+..+.|+
T Consensus 143 --~--~~~~~~~~~~i~~~l~~~~~~---~~~ii~vSA~~g~gi~~--------------L~~~l~~~l~~~~~~~~~~~ 201 (403)
T 3sjy_A 143 --S--KEEALSQYRQIKQFTKGTWAE---NVPIIPVSALHKINIDS--------------LIEGIEEYIKTPYRDLSQKP 201 (403)
T ss_dssp --C--HHHHHHHHHHHHHHHTTSTTT---TCCEEECBTTTTBSHHH--------------HHHHHHHHSCCCCCCTTSCC
T ss_pred --c--hHHHHHHHHHHHHHHHhhCCC---CCEEEEEECCCCcChHH--------------HHHHHHHhCCCCCCCCCCCc
Confidence 3 233445556666666665543 57999999999999987 445444 4777778889999
Q ss_pred eEEEEEEEc--c--------CCeEEEEEEEeeeecCCCEEEEecCCc------------EEEEEEEEECCeeecccCCCC
Q 010318 313 RMPIIDKFK--D--------MGTVVMGKVESGSVREGDSLLVMPNKA------------QVKVLAIYCDDNRVRHAGPGE 370 (513)
Q Consensus 313 ~~~i~~~~~--~--------~G~vv~g~v~sG~l~~gd~v~~~p~~~------------~~~V~~i~~~~~~v~~a~aG~ 370 (513)
+++|.++|. + +|+|++|+|.+|+|++||+|.++|++. ..+|++|+++++++++|.|||
T Consensus 202 ~~~v~~~~~v~~~~~~~~~~~G~v~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~a~~G~ 281 (403)
T 3sjy_A 202 VMLVIRSFDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFGDEEFKEAKPGG 281 (403)
T ss_dssp EEEEEEEECCCCTTCCSSSCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTEEESEECSSS
T ss_pred EEEEEEEEeecCCCcccccCcCcEEEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEECCEEcCEEeCCC
Confidence 999999883 3 799999999999999999999999874 589999999999999999999
Q ss_pred eEEEEec---cCCcccceeeeEEccCCCCcceeeEEEEEEEEeccc-------ccccccCCcEEEEEEEeEEEEEEEEEE
Q 010318 371 NLRIRLS---GIEEEDILSGFVLSSVAKPVAAVTEFIAQLQILELL-------DNAIFTAGYKAVLHIHAVVEECEIVEL 440 (513)
Q Consensus 371 ~v~i~l~---~~~~~~i~~G~vl~~~~~~~~~~~~f~a~i~~~~~l-------~~~~i~~G~~~~~~~~~~~~~~~i~~i 440 (513)
+|+++|. +++..++++||||++++.+|+.++.|+|++.||+.. ...+|..||++.+|+++.++.|+|..+
T Consensus 282 ~v~~~l~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~gt~~~~~~v~~~ 361 (403)
T 3sjy_A 282 LVAIGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGAKEMLKVDPIRAKETLMLSVGSSTTLGIVTSV 361 (403)
T ss_dssp CEEEEESSCHHHHGGGTTTTCEEEETTCCCCEEEEEEEEEEECSBCTTCSSCCBCCCCCTTCEEEEEETTEEEEEEEEEE
T ss_pred EEEEEeccccccchhhhccccEEeCCCCCCcceeEEEEEEEEEeccccccccccCCCCCCCCEEEEEECccEEEEEEEEe
Confidence 9999986 667789999999999999888899999999997642 146899999999999999999999865
Q ss_pred EEEeecCCCccccccceeecCCcEEEEEEEEcceEEeeecccccccc-eEEE-EeCC---eEEEEEEEE
Q 010318 441 LHQIDLKTKKPMKKKVLFVKNGAIVVCRIQVNNSICTEKFADFAQLG-RFTL-RTEG---KTVAVGKVT 504 (513)
Q Consensus 441 ~~~~d~~~g~~~~~~~~~l~~g~~~~v~~~~~~pi~~e~~~~~~~lg-rfil-r~~g---~tva~G~V~ 504 (513)
. ++ .++|+|.+|+|++.. . ||+| |+.+ |++|+|.|+
T Consensus 362 ~--------------------~~--~~~~~l~~p~~~~~g------~~r~~i~r~~~~~~r~~g~g~i~ 402 (403)
T 3sjy_A 362 K--------------------KD--EIEVELRRPVAVWSN------NIRTVISRQIAGRWRMIGWGLVE 402 (403)
T ss_dssp C--------------------SS--EEEEEEEEEEECCSS------SCEEEEEEEETTEEEEEEEEEEE
T ss_pred c--------------------Cc--eEEEEeCCcEeeccC------CEEEEEEEEeCCcEEEEEEEEEE
Confidence 2 11 588999999999875 5 8998 5443 899999985
No 17
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-41 Score=319.65 Aligned_cols=199 Identities=48% Similarity=0.818 Sum_probs=187.6
Q ss_pred CCCCceEEEEEEEccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECCeeecccCCCCeEEEEeccCCcccceee
Q 010318 308 PNGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSG 387 (513)
Q Consensus 308 ~~~~~~~~i~~~~~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G 387 (513)
.++||||+|+++|++.|++++|+|.+|+|++||+|.++|++..++|++|+++++++++|.|||+|+++|+|++..++++|
T Consensus 3 ~~~p~rl~v~~v~~g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~~~V~~I~~~~~~~~~A~aGd~V~l~L~gi~~~di~rG 82 (204)
T 3e1y_E 3 LGSPIRLPIVDKYKDMGTVVLGKLESGSICKGQQLVMMPNKHNVEVLGILSDDVETDTVAPGENLKIRLKGIEEEEILPG 82 (204)
T ss_dssp ----CBEEEEEEEESSSEEEEEECCBSCEESSCCEEETTTTEEEEEEEECSSSSCBSEECTTSEEEEEEEESSSSCCCTT
T ss_pred CCCCEEEEEEEEEcCCCEEEEEEEecCEEECCCEEEECCCCCEEEEEEEEECCEEeEEECCCCEEEEEEcCCCHHHCccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEccCCCCcceeeEEEEEEEEeccccc-ccccCCcEEEEEEEeEEEEEEEEEEEEEeecCCCccccccceeecCCcEEE
Q 010318 388 FVLSSVAKPVAAVTEFIAQLQILELLDN-AIFTAGYKAVLHIHAVVEECEIVELLHQIDLKTKKPMKKKVLFVKNGAIVV 466 (513)
Q Consensus 388 ~vl~~~~~~~~~~~~f~a~i~~~~~l~~-~~i~~G~~~~~~~~~~~~~~~i~~i~~~~d~~~g~~~~~~~~~l~~g~~~~ 466 (513)
|+|++++++++.+++|+|++.|| ++ ++|..||++++|+|+.+++|+|.+|.+++|.+||+..+.+|++|++|+.+.
T Consensus 83 ~vl~~~~~~~~~~~~f~a~v~~l---~~~~~i~~g~~~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~a~ 159 (204)
T 3e1y_E 83 FILCDPNNLCHSGRTFDAQIVII---EHKSIICPGYNAVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCI 159 (204)
T ss_dssp CEEBCSSSCCCCCSEEEEEEECC---SCCSCCCTTEEEEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCEEE
T ss_pred eEEECCCCCCchhEEEEEEEEEe---CCCCccCCCceEEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCEEE
Confidence 99999998888999999999994 45 579999999999999999999999999999999998888899999999999
Q ss_pred EEEEEcceEEeeecccccccceEEEEeCCeEEEEEEEEecCCC
Q 010318 467 CRIQVNNSICTEKFADFAQLGRFTLRTEGKTVAVGKVTELPTV 509 (513)
Q Consensus 467 v~~~~~~pi~~e~~~~~~~lgrfilr~~g~tva~G~V~~~~~~ 509 (513)
|+|++.+|+|+|+|.+|+.+|||+|||+|+|+|+|+|+++.+.
T Consensus 160 v~l~~~~pi~~e~~~~~~~~Grfilrd~~~Tva~G~V~~v~~~ 202 (204)
T 3e1y_E 160 ARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPE 202 (204)
T ss_dssp EEEEESSCCCCCCTTSSGGGTEEEEECSSSCCEEEEEEEECC-
T ss_pred EEEEECCeEEEEEcccCcCCCCEEEEECCcEEEEEEEEEEecC
Confidence 9999999999999999999999999999999999999998865
No 18
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=5.4e-38 Score=337.18 Aligned_cols=282 Identities=19% Similarity=0.200 Sum_probs=205.7
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.+||+|+||+|||||||+.+||+.+|.+.....- ..|. .....++|+.+.|++|||||..+...|.|+
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V-------~~~~--~~~~~~~D~~~~EreRGITI~s~~~~~~~~ 98 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSV-------KARK--AARHATSDWMAMERERGISVTTSVMQFPYR 98 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHH-------HHC----------------------CTTTEEEEEET
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCccccccee-------ecCc--cccccccCChHHHHHCCCcEeeceEEEEEC
Confidence 4578999999999999999999999999987543211 1110 112457999999999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
++.|+|||||||.+|...+.++++.+|+||+||||.+|+. +||+..++++..+++| .|++|||||++.+++.
T Consensus 99 ~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~-------~qT~~v~~~a~~~~lp-~i~fINK~Dr~~ad~~ 170 (548)
T 3vqt_A 99 DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVE-------AQTRKLMDVCRMRATP-VMTFVNKMDREALHPL 170 (548)
T ss_dssp TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSC-------HHHHHHHHHHHHTTCC-EEEEEECTTSCCCCHH
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcc-------cccHHHHHHHHHhCCc-eEEEEecccchhcchh
Confidence 9999999999999999999999999999999999999964 8999999999999999 7899999999877642
Q ss_pred HHHHHHHHhhhHhhh-----------------------------------------------------------------
Q 010318 239 KERYDEIESKMTPFL----------------------------------------------------------------- 253 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l----------------------------------------------------------------- 253 (513)
..++++.+.+....
T Consensus 171 -~~~~~i~~~l~~~~~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (548)
T 3vqt_A 171 -DVMADIEQHLQIECAPMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLA 249 (548)
T ss_dssp -HHHHHHHHHHTSEEEESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHH
T ss_pred -HhhhhhhhhcCCceEeEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHH
Confidence 23333333321000
Q ss_pred --hhccC-------cccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCC---------CCCCCceEE
Q 010318 254 --KASGY-------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---------DPNGPFRMP 315 (513)
Q Consensus 254 --~~~g~-------~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~---------~~~~~~~~~ 315 (513)
...+. ....-+|++..||+++.|+..| |..+++.+|.|.. ..+.||...
T Consensus 250 l~~~~~~~~~~e~~~~g~~~PV~~gSA~~~~Gv~~L-------------Ld~iv~~~PsP~~~~~~~~~~~~~~~p~~a~ 316 (548)
T 3vqt_A 250 LLEEAGTPFDEERYLKGELTPVFFGSAINNFGVREM-------------LDMFVEFAPGPQPRPAATRVVEPGEEAFTGV 316 (548)
T ss_dssp HHHHHCCCCCHHHHHTTSEEEEEECBGGGTBSHHHH-------------HHHHHHHSCCSCCEEBSSSEECTTCSSCEEE
T ss_pred HHhhccCchhHHHHHhCCcceeeecccccCcCHHHH-------------HHHHHHhCCCCCCccccccccCCCCcCceEE
Confidence 00000 0012358888999999999885 3345566777643 235788888
Q ss_pred EEEEEc-----cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----CeeecccCCCCeEEEEeccCCccccee
Q 010318 316 IIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILS 386 (513)
Q Consensus 316 i~~~~~-----~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~ 386 (513)
|..++. ..|.+.++||.||+|+.|+.|+....++..+|..+... +.++++|.||++|++ .|+ .+++.
T Consensus 317 vfKi~~~~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~~ 392 (548)
T 3vqt_A 317 VFKIQANMDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGI--PNH--GTIKI 392 (548)
T ss_dssp EEEEECC-------CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEE--ECS--SCCCT
T ss_pred EEEEEccCCcCCCCeEEEEEEecceecCCCEEEeeccccccccchhhhhccccccccCEEecCCEEEe--cCC--ccCcc
Confidence 888763 47999999999999999999999888888999888875 467999999999995 555 35889
Q ss_pred eeEEccCCC
Q 010318 387 GFVLSSVAK 395 (513)
Q Consensus 387 G~vl~~~~~ 395 (513)
||+||+.+.
T Consensus 393 GDTl~~~~~ 401 (548)
T 3vqt_A 393 GDTFTESKE 401 (548)
T ss_dssp TCEEESSSS
T ss_pred CCEecCCCC
Confidence 999998764
No 19
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=1e-36 Score=328.23 Aligned_cols=268 Identities=24% Similarity=0.378 Sum_probs=203.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC-
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~- 158 (513)
.+.+||+|+||+|||||||+++|++.+|.+..+.+ ..+++|..+.|+++|+|+......+.|.
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGITI~~~~~~~~~~~ 67 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREK----------------REQLLDTLDVERERGITVKMQAVRMFYKA 67 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC---------------------------------------CCCCSEEEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEEc
Confidence 46789999999999999999999998887765421 2467888999999999999888777664
Q ss_pred ----CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCC
Q 010318 159 ----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 ----~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~ 234 (513)
.+.++|||||||.+|...+.++++.+|++||||||++|.. .||.+++.++...++| +|+|+||||++.
T Consensus 68 ~dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~-------~qt~~~~~~a~~~~ip-iIvviNKiDl~~ 139 (600)
T 2ywe_A 68 KDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIE-------AQTVANFWKAVEQDLV-IIPVINKIDLPS 139 (600)
T ss_dssp TTSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCC-------HHHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred CCCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCcc-------HHHHHHHHHHHHCCCC-EEEEEeccCccc
Confidence 3789999999999999999999999999999999999953 6999999999999999 899999999954
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceE
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 314 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~ 314 (513)
.+ .+++.+++... +++. ..+++++||++|.|+.++ |..++..++.|..+.+.|+++
T Consensus 140 a~-----~~~v~~el~~~---lg~~---~~~vi~vSAktg~GI~~L-------------le~I~~~lp~p~~~~~~pl~~ 195 (600)
T 2ywe_A 140 AD-----VDRVKKQIEEV---LGLD---PEEAILASAKEGIGIEEI-------------LEAIVNRIPPPKGDPQKPLKA 195 (600)
T ss_dssp CC-----HHHHHHHHHHT---SCCC---GGGCEECBTTTTBSHHHH-------------HHHHHHHSCCCCCCTTSCCEE
T ss_pred cC-----HHHHHHHHHHh---hCCC---cccEEEEEeecCCCchHH-------------HHHHHHhcccccccccCCcce
Confidence 43 22333444332 3443 236899999999999985 344566788888788899999
Q ss_pred EEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC---CeeecccCCCCeEEEEeccC-Ccccceeee
Q 010318 315 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDILSGF 388 (513)
Q Consensus 315 ~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~---~~~v~~a~aG~~v~i~l~~~-~~~~i~~G~ 388 (513)
.|.+++ +..|++++|+|.+|+|++||.|++.|.+...+|++|..+ +.+++++.||+++.+. .|+ +..++++||
T Consensus 196 lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~~~~~v~~~~aGdi~~v~-~gi~~~~~~~~GD 274 (600)
T 2ywe_A 196 LIFDSYYDPYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPKMTKFDKLSAGDVGYIA-ASIKDVRDIRIGD 274 (600)
T ss_dssp EEEEEEEETTTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESSSEEEESCEETTCEEEEE-SSCCCTTSSCTTC
T ss_pred eEEEEeecccceEEEEEEEEeCEEecCCEEEeccccceEeeecccccCCCceECCEEecCceeeee-ccccchhhccCCC
Confidence 999887 467999999999999999999999999999999999875 4689999999987764 455 346799999
Q ss_pred EEccCCCC
Q 010318 389 VLSSVAKP 396 (513)
Q Consensus 389 vl~~~~~~ 396 (513)
+|+.++++
T Consensus 275 tl~~~~~~ 282 (600)
T 2ywe_A 275 TITHAKNP 282 (600)
T ss_dssp EEEESSSC
T ss_pred EEEeCCCc
Confidence 99987754
No 20
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=1e-35 Score=321.19 Aligned_cols=268 Identities=23% Similarity=0.363 Sum_probs=198.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC-
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~- 158 (513)
.+.+||+|+||+|||||||+++|++.+|.+..+.+ ..+++|..+.|+++|+|+......+.|.
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~----------------~~~~~D~~~~ErerGiTi~~~~~~~~~~~ 65 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREM----------------EAQVLDSMDLERERGITIKAQSVTLDYKA 65 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC------------------------------------------CEEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccc----------------cccccccchhhhcccceeeeeEEEEEEec
Confidence 35789999999999999999999998888765421 2467888999999999999988888775
Q ss_pred ----CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCC
Q 010318 159 ----TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 ----~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~ 234 (513)
++.++|||||||.+|...+.++++.+|++||||||++|.. .||.+++..+...++| +|+|+||+|++.
T Consensus 66 ~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~-------~qt~~~~~~~~~~~ip-iIvViNKiDl~~ 137 (599)
T 3cb4_D 66 SDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVE-------AQTLANCYTAMEMDLE-VVPVLNKIDLPA 137 (599)
T ss_dssp TTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCC-------THHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred CCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCC-------HHHHHHHHHHHHCCCC-EEEeeeccCccc
Confidence 3789999999999999999999999999999999999953 7999999999999999 899999999954
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceE
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRM 314 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~ 314 (513)
.+ ..++.+++...+ ++. ..+++++||++|.|+.++ |..++..++.|..+.+.|+++
T Consensus 138 a~-----~~~v~~ei~~~l---g~~---~~~vi~vSAktg~GI~~L-------------l~~I~~~lp~p~~~~~~p~~a 193 (599)
T 3cb4_D 138 AD-----PERVAEEIEDIV---GID---ATDAVRCSAKTGVGVQDV-------------LERLVRDIPPPEGDPEGPLQA 193 (599)
T ss_dssp CC-----HHHHHHHHHHHT---CCC---CTTCEEECTTTCTTHHHH-------------HHHHHHHSCCCCCCTTSCCEE
T ss_pred cc-----HHHHHHHHHHHh---CCC---cceEEEeecccCCCchhH-------------HHHHhhcCCCccccccCCcee
Confidence 43 223334443332 332 235899999999999985 334556778887788899999
Q ss_pred EEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC---CeeecccCCCCeEEEEeccC-Ccccceeee
Q 010318 315 PIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD---DNRVRHAGPGENLRIRLSGI-EEEDILSGF 388 (513)
Q Consensus 315 ~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~---~~~v~~a~aG~~v~i~l~~~-~~~~i~~G~ 388 (513)
.|.+++ +..|++++|+|.+|+|+.||++.+.+.+...+|.+|... +.+++++.||+++.+ +.|+ +..++++||
T Consensus 194 lI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~~~~~~~~~aGdi~~~-~~gi~~~~~~~~GD 272 (599)
T 3cb4_D 194 LIIDSWFDNYLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWL-VCAIKDIHGAPVGD 272 (599)
T ss_dssp EEEEEEEETTTEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSSEEECSEECTTCEEEE-ECCCSSGGGSCTTC
T ss_pred eeeeccccccccEEEEEEEEeCEEecCCEEEeccccceeEEeeeeeccCCceECCEEcCCCeeEe-eccccccccCccCC
Confidence 999987 568999999999999999999999999998899998874 467899999997776 4454 356789999
Q ss_pred EEccCCCC
Q 010318 389 VLSSVAKP 396 (513)
Q Consensus 389 vl~~~~~~ 396 (513)
+|++.+++
T Consensus 273 tl~~~~~~ 280 (599)
T 3cb4_D 273 TLTLARNP 280 (599)
T ss_dssp EEEESSSC
T ss_pred EeeecCCc
Confidence 99987654
No 21
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.6e-35 Score=328.34 Aligned_cols=277 Identities=23% Similarity=0.286 Sum_probs=198.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC-
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~- 158 (513)
.+.+||+|+||+|||||||+++||+.+|.+.... +. .....++|+.+.|++|||||......+.|.
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g------------~v-~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~ 77 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLG------------EV-HDGAATTDWMVQEQERGITITSAAVTTFWKG 77 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC-------------------------------------CCEEEEEECC
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCc------------ee-cCCCccCCChHHHHHcCCeEEeeeEEEEecc
Confidence 4789999999999999999999999988654211 00 012457999999999999999999999885
Q ss_pred ------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 159 ------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 159 ------~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
++.|+|||||||.+|...+.++++.+|+||+||||.+|+. .||+..++++...++| .|++|||||+
T Consensus 78 ~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~-------~qT~~v~~~a~~~~lp-~i~~iNKiDr 149 (709)
T 4fn5_A 78 SRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVE-------PQSETVWRQANKYGVP-RIVYVNKMDR 149 (709)
T ss_dssp TTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHHHHTCC-EEEEEECSSS
T ss_pred CcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCc-------hhHHHHHHHHHHcCCC-eEEEEccccc
Confidence 6899999999999999999999999999999999999964 7999999999999999 7899999999
Q ss_pred CCCCchHHHHHHHHhhhHh-------------------------------------------------------------
Q 010318 233 HTVNWSKERYDEIESKMTP------------------------------------------------------------- 251 (513)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~------------------------------------------------------------- 251 (513)
+.+++. ...+++.+.+..
T Consensus 150 ~~a~~~-~~~~ei~~~l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~ 228 (709)
T 4fn5_A 150 QGANFL-RVVEQIKKRLGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEA 228 (709)
T ss_dssp TTCCHH-HHHHHHHHHHCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_pred cCccHH-HHHHHhhhhcccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHH
Confidence 766532 222222221110
Q ss_pred -----------hhhhccCc-------------ccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCC--
Q 010318 252 -----------FLKASGYN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITP-- 305 (513)
Q Consensus 252 -----------~l~~~g~~-------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~-- 305 (513)
++....+. ...-.|++..||+++.|+..| |...++.+|.|.
T Consensus 229 ~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~l-------------Ld~i~~~lPsP~~~ 295 (709)
T 4fn5_A 229 AAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLV-------------LDAVIDYLPAPTEI 295 (709)
T ss_dssp HHTSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHH-------------HHHHHHHSCCTTSS
T ss_pred HHhccHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeeeecccCCchHHH-------------HHHHHhhCCCCccc
Confidence 00000000 012357778888888888764 333455666652
Q ss_pred ------------------CCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----Ce
Q 010318 306 ------------------RDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DN 361 (513)
Q Consensus 306 ------------------~~~~~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~ 361 (513)
.+.+.||.+.|.++. +..|.+.++||.||+|+.||+|+....++..+|..+... ..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~d~~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~ 375 (709)
T 4fn5_A 296 PAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQRE 375 (709)
T ss_dssp CCEECBCCC-CCSCCEECSCTTSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCC
T ss_pred ccccccCCccccccccccCCccCcceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCcEEeecceeEeecceee
Confidence 356789999999887 457999999999999999999998777777788887654 56
Q ss_pred eecccCCCCeEEEEeccCCcccceeeeEEccCCC
Q 010318 362 RVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 395 (513)
Q Consensus 362 ~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~ 395 (513)
++++|.||++|+ +.|++ ++++|++|++.+.
T Consensus 376 ~v~~~~aGdIv~--i~Gl~--~~~~gdTl~~~~~ 405 (709)
T 4fn5_A 376 EIKEVRAGDIAA--LIGMK--DVTTGDTLCSIEK 405 (709)
T ss_dssp EESEECTTCEEE--ECSCS--SCCTTCEEECSSS
T ss_pred EeeeecCCCeee--ecCCC--cCccCCEecCCCc
Confidence 899999999999 46764 4889999998764
No 22
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=1.2e-37 Score=340.95 Aligned_cols=274 Identities=22% Similarity=0.306 Sum_probs=215.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
+++||+|+||+|||||||+++||+.+|.+.... +. .....++|+.+.|++|||||..+...|.|+++
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g------------~v-~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~ 67 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELG------------SV-DKGTTRTDNTLLERQRGITIQTGITSFQWENT 67 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCS------------SC-CCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSC
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCcccc------------cc-ccCCcccCCcHHHHhCCCcEEeeeEEEEECCE
Confidence 478999999999999999999999999886531 11 11245799999999999999999999999999
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHH
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 240 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~ 240 (513)
.|+|||||||.+|..++.++++.+|+||+||||.+|+. +||+.+++++..+++| .|++|||||++.+++. .
T Consensus 68 ~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~-------~qT~~v~~~a~~~~lp-~i~~INKmDr~~a~~~-~ 138 (638)
T 3j25_A 68 KVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQ-------AQTRILFHALRKMGIP-TIFFINKIDQNGIDLS-T 138 (638)
T ss_dssp BCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTC-------SHHHHHHHHHHHHTCS-CEECCEECCSSSCCSH-H
T ss_pred EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCC-eEEEEeccccccCCHH-H
Confidence 99999999999999999999999999999999999964 8999999999999999 6789999999877753 2
Q ss_pred HHHHHHhhhHh--------------------------------------hhhhccC-------------cccCCeeEEEe
Q 010318 241 RYDEIESKMTP--------------------------------------FLKASGY-------------NVKKDVQFLPI 269 (513)
Q Consensus 241 ~~~~i~~~l~~--------------------------------------~l~~~g~-------------~~~~~~~iipi 269 (513)
.++++.+.+.. ++....+ ....-.|++..
T Consensus 139 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~g 218 (638)
T 3j25_A 139 VYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHG 218 (638)
T ss_dssp HHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCC
T ss_pred HHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhccccccccccc
Confidence 33333332210 0000000 00113578888
Q ss_pred ecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecC
Q 010318 270 SGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPN 347 (513)
Q Consensus 270 Sa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~ 347 (513)
||+++.|+..| |..+.+.+|.|....+.||.+.|.+++ +..|.++++||.||+|+.||.|.+...
T Consensus 219 Sa~~~~Gv~~L-------------Ld~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~ 285 (638)
T 3j25_A 219 SAKSNIGIDNL-------------IEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEK 285 (638)
T ss_dssp CSTTCCSHHHH-------------HHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCC
T ss_pred ccccCCCchhH-------------hhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccC
Confidence 99999999875 333456778887778889999998876 467999999999999999999987654
Q ss_pred CcEEEEEEEEEC----CeeecccCCCCeEEEEeccCCcccceeeeEEccCCC
Q 010318 348 KAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 395 (513)
Q Consensus 348 ~~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~ 395 (513)
+ ..+|..+... ..++++|.||++|++ .| ..++.|+++++...
T Consensus 286 ~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i--~g---~~~~~~~tl~d~~~ 331 (638)
T 3j25_A 286 E-KIKVTEMYTSINGELCKIDRAYSGEIVIL--QN---EFLKLNSVLGDTKL 331 (638)
T ss_dssp C-CSSBCCCCSSCCCCBSCCCTTBCCCCSCC--CS---SSCSSEECSSSSSS
T ss_pred c-ceeEEeeecccccccccccccccceEEEE--ec---cccccCceecCCCC
Confidence 4 3456666543 467999999999985 43 34678899887653
No 23
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=1.6e-33 Score=301.00 Aligned_cols=280 Identities=19% Similarity=0.217 Sum_probs=214.0
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+|+||+|+|||||+++|++..|.+.....-. .+. ......+|..+.++.+|+|+......+.+.+
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~-------~~~--~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 81 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIK-------SRK--AARHATSDWMELEKQRGISVTTSVMQFPYKD 81 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHH-------TC------CCHHHHHHHHHHHCCSSSSSEEEEEETT
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeee-------ccc--cccceecccchhhhcCCeeEEEeEEEEEeCC
Confidence 4578999999999999999999999888764322100 000 0112345667788899999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
+.++|||||||.+|...+.++++.+|++|+|+|+..|. ..|+..++..+...++| +|+|+||||+...+ ..
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~-------~~~t~~~~~~~~~~~iP-iivviNK~Dl~~~~-~~ 152 (528)
T 3tr5_A 82 YLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGV-------EPRTIKLMEVCRLRHTP-IMTFINKMDRDTRP-SI 152 (528)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCS-------CHHHHHHHHHHHTTTCC-EEEEEECTTSCCSC-HH
T ss_pred EEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCC-------CHHHHHHHHHHHHcCCC-EEEEEeCCCCcccc-HH
Confidence 99999999999999999999999999999999999985 36999999999999999 89999999996544 22
Q ss_pred HHHHHHHhhhHhhhhhc---------------------------------------------------------------
Q 010318 240 ERYDEIESKMTPFLKAS--------------------------------------------------------------- 256 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~--------------------------------------------------------------- 256 (513)
..++++.+.+.......
T Consensus 153 ~~l~ei~~~l~~~~~~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l 232 (528)
T 3tr5_A 153 ELLDEIESILRIHCAPVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIEL 232 (528)
T ss_dssp HHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCceeeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcch
Confidence 23333333221100000
Q ss_pred -----------cCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCC---------CCCCceEEE
Q 010318 257 -----------GYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD---------PNGPFRMPI 316 (513)
Q Consensus 257 -----------g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~---------~~~~~~~~i 316 (513)
.+.....+|++++||++|.|+.+|+ ..+++.+|.|... .+.||...|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~PV~~gSA~~~~GV~~Ll-------------d~i~~~~p~p~~~~~~~~~~~~~~~~~~~~V 299 (528)
T 3tr5_A 233 VKGASHPFEREGYLKGELTPIFFGSAINNFGVGELL-------------DAFVKEAPPPQGRETNSRLVKPEEEKFSGFV 299 (528)
T ss_dssp HHHHSCCCCHHHHHTTSEEEEEECBGGGTBSHHHHH-------------HHHHHHSCCCCCBCBSSSCBCTTSSSCEEEE
T ss_pred hhhhhhHHHHHHHhcCceeEEEeccccCCccHHHHH-------------HHHHHhCCCCCcccccceeeCCCcccceeEE
Confidence 0000123489999999999999853 3344556655432 257899999
Q ss_pred EEEEc-----cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----CeeecccCCCCeEEEEeccCCcccceee
Q 010318 317 IDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSG 387 (513)
Q Consensus 317 ~~~~~-----~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G 387 (513)
.++.. .+|+++++||.||+|+.||.|+..+.++..+|.++... +.++++|.|||+|++ .++ .+++.|
T Consensus 300 FKi~~~~dp~~~g~l~~~RV~sG~l~~g~~v~~~~~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~--~~l--~~~~~G 375 (528)
T 3tr5_A 300 FKIQANMDPGHRDRIAFLRIASGQYQKGMKAYHVRLKKEIQINNALTFMAGKRENAEEAWPGDIIGL--HNH--GTIQIG 375 (528)
T ss_dssp EEEEECCC-CCCCEEEEEEEEESCEETTEEEEETTTTEEEEESSCBCCBTTCSSCCSEECTTCEEEE--EES--SSCCTT
T ss_pred EEEecccCccCCceEEEEEEecCeEcCCCEEEecCCCceEEEeeeEEEeCCCeeECCEECCCCEEEE--cCC--CCCccC
Confidence 88752 67999999999999999999999999999999998763 678999999999985 444 347899
Q ss_pred eEEccCC
Q 010318 388 FVLSSVA 394 (513)
Q Consensus 388 ~vl~~~~ 394 (513)
|+||+..
T Consensus 376 Dtl~~~~ 382 (528)
T 3tr5_A 376 DTFTQGE 382 (528)
T ss_dssp CEEESSC
T ss_pred CEEcCCC
Confidence 9999743
No 24
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=2.6e-35 Score=313.52 Aligned_cols=255 Identities=26% Similarity=0.331 Sum_probs=199.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe-CC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ET 159 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~ 159 (513)
++++|+++||+|||||||+++|..... .....+|+|++.+...+.+ .+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~-------------------------------~~~~~~giT~~i~~~~v~~~~g 51 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQV-------------------------------AAMEAGGITQHIGAFLVSLPSG 51 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHH-------------------------------HHSSSCCBCCCTTSCCBCSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccccCCceeEEEeEEEEEeCCC
Confidence 568899999999999999999954321 0123378899888888877 56
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
..++|+|||||++|..++.++++.+|++|||+|+++|.+ +||.+++.++...++| +|||+||+|++..++..
T Consensus 52 ~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~-------~qt~e~l~~~~~~~vP-iIVViNKiDl~~~~~~~ 123 (537)
T 3izy_P 52 EKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVM-------KQTVESIQHAKDAHVP-IVLAINKCDKAEADPEK 123 (537)
T ss_dssp SCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCC-------HHHHHHHHHHHTTTCC-EEECCBSGGGTTTSCCS
T ss_pred CEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCcc-------HHHHHHHHHHHHcCCc-EEEEEecccccccchHH
Confidence 789999999999999999999999999999999999965 6999999999999999 99999999996544321
Q ss_pred HHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEEEE
Q 010318 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDK 319 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~ 319 (513)
+..........+..+ ...++++|+||++|.|+.++++. +...+.. ..+...++.|++++|.++
T Consensus 124 --v~~~l~~~~~~~e~~----~~~~~iv~vSAktG~GI~eLle~----------I~~l~~~-~~~~~~~~~~~~~~V~e~ 186 (537)
T 3izy_P 124 --VKKELLAYDVVCEDY----GGDVQAVHVSALTGENMMALAEA----------TIALAEM-LELKADPTGAVEGTVIES 186 (537)
T ss_dssp --SSSHHHHTTSCCCCS----SSSEEECCCCSSSSCSSHHHHHH----------HHHHHTT-CCCCCCSSSSEEEEEEEE
T ss_pred --HHHHHHhhhhhHHhc----CCCceEEEEECCCCCCchhHHHH----------HHHhhhc-ccccCCCCCCcceeEEEE
Confidence 111111111111111 13579999999999999997542 3333332 334456778999999999
Q ss_pred E--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEECC-eeecccCCCCeEEEEeccCCcccceeeeEEccCCCC
Q 010318 320 F--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCDD-NRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAKP 396 (513)
Q Consensus 320 ~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~~-~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~ 396 (513)
+ ++.|++++|+|.+|+|++||.+.. +....+|++|+.++ .++++|.||++|+| .|++ ....+||+|+...+.
T Consensus 187 ~~~~g~G~V~~g~V~~G~l~~Gd~v~~--g~~~~kVr~i~~~~g~~v~~A~~G~~V~i--~g~~-~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 187 FTDKGRGPVTTAIIQRGTLRKGSILVA--GKSWAKVRLMFDENGRAVNEAYPSMPVGI--IGWR-DLPSAGDEILEVESE 261 (537)
T ss_dssp CCCTTCCCCEEEEEEEECCSSEEEECC--SSCCEEEEEEEECCCCCSCCSCCSTTCCC--CSSE-EEEEEESSCCSCCSS
T ss_pred EEeCCCceEEEEEEecCEEEcCCEEEe--CCceEEEEEEEcCCCCCCcEEcCCCEEEE--ECCC-CCCCCCCEEEecCCh
Confidence 8 578999999999999999998854 45668999999985 79999999999985 5665 345899999988643
No 25
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=3.8e-32 Score=300.03 Aligned_cols=274 Identities=23% Similarity=0.265 Sum_probs=215.6
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+|+||+|||||||+++|++..|.+.... .. . ...+++|..+.|+++|+|+......+.+.
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g------~v-~------~g~~~~D~~~~E~~rgiTi~~~~~~~~~~ 73 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIG------EV-H------DGAATMDWMEQEQERGITITSAATTAFWS 73 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCccccc------cc-C------CCceeecChhhHHhcCceeeeceEEEEEC
Confidence 34679999999999999999999998877654321 00 0 11357788889999999999998889888
Q ss_pred C-------eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 159 T-------TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 159 ~-------~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
+ +.++|||||||.+|...+.++++.+|++|+|||++.|.. .|+.+++.++...++| +++++||+|
T Consensus 74 ~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-------~qt~~~~~~~~~~~ip-~ilviNKiD 145 (704)
T 2rdo_7 74 GMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQ-------PQSETVWRQANKYKVP-RIAFVNKMD 145 (704)
T ss_pred CccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCc-------HHHHHHHHHHHHcCCC-EEEEEeCCC
Confidence 7 999999999999999999999999999999999999853 6999999999999999 889999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhc---------------------------------c---------------------
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKAS---------------------------------G--------------------- 257 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~---------------------------------g--------------------- 257 (513)
+...+ +.++.++++..|... |
T Consensus 146 ~~~~~-----~~~~~~~l~~~l~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 220 (704)
T 2rdo_7 146 RMGAN-----FLKVVNQIKTRLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQ 220 (704)
T ss_pred ccccc-----HHHHHHHHHHHhCCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHH
Confidence 96543 233333333332210 0
Q ss_pred ----------------------Cc-------------ccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhcc
Q 010318 258 ----------------------YN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIE 302 (513)
Q Consensus 258 ----------------------~~-------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~ 302 (513)
+. ...-+|++..||++|.|+..|++ .+++.+|
T Consensus 221 ~l~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd-------------~i~~~lP 287 (704)
T 2rdo_7 221 NLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLD-------------AVIDYLP 287 (704)
T ss_pred HHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCccHHHHHH-------------HHHHHCC
Confidence 00 01125788889999999887533 3444555
Q ss_pred CCCC--------------------CCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC-
Q 010318 303 ITPR--------------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD- 359 (513)
Q Consensus 303 ~~~~--------------------~~~~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~- 359 (513)
.|.. +.+.||.+.|.+++ +..|++++|||.||+|+.||+|+..+.+...+|.+|...
T Consensus 288 sP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~ 367 (704)
T 2rdo_7 288 SPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMH 367 (704)
T ss_pred ChhhcccccccCCcccccccccccCCCCceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCcEEEeceEEEEe
Confidence 5432 25679999999988 468999999999999999999999988888999999764
Q ss_pred ---CeeecccCCCCeEEEEeccCCcccceeeeEEccCCC
Q 010318 360 ---DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSSVAK 395 (513)
Q Consensus 360 ---~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~ 395 (513)
+.++++|.||++|++. |++ ++++||+|++.+.
T Consensus 368 g~~~~~v~~~~aGdIv~i~--gl~--~~~~GdTl~~~~~ 402 (704)
T 2rdo_7 368 ANKREEIKEVRAGDIAAAI--GLK--DVTTGDTLCDPDA 402 (704)
T ss_pred CCCceEcceeCCCCEEEEe--Ccc--cCccCCEEeCCCc
Confidence 5789999999999973 664 4799999998653
No 26
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=2.2e-34 Score=303.91 Aligned_cols=248 Identities=28% Similarity=0.338 Sum_probs=193.7
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.++++|+++||+|||||||+++|+..... ....+|+|++.+.+.+.+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~-------------------------------~~e~~GIT~~i~~~~v~~~~ 50 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVA-------------------------------SGEAGGITQHIGAYHVETEN 50 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHS-------------------------------BTTBCCCCCCSSCCCCCTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCc-------------------------------cccCCCeeEeEEEEEEEECC
Confidence 46789999999999999999999532110 12237899999988899999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
+.++|+|||||++|..++.++++.+|++|||||+++|.+ +||.+++.++...++| +|+++||||++..++.
T Consensus 51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~-------~qT~e~l~~~~~~~vP-iIVviNKiDl~~~~~~- 121 (501)
T 1zo1_I 51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVM-------PQTIEAIQHAKAAQVP-VVVAVNKIDKPEADPD- 121 (501)
T ss_dssp SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSC-------TTTHHHHHHHHHTTCC-EEEEEECSSSSTTCCC-
T ss_pred EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCcc-------HHHHHHHHHHHhcCce-EEEEEEeccccccCHH-
Confidence 999999999999999999999999999999999999864 7999999999999999 9999999999544321
Q ss_pred HHHHHHHhhhHhhhhhccCc---ccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhh---ccCCCCCCCCCce
Q 010318 240 ERYDEIESKMTPFLKASGYN---VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDR---IEITPRDPNGPFR 313 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~---~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~---l~~~~~~~~~~~~ 313 (513)
.+...+...++. ....++++|+||++|.|+.++++ .|.. +..+...++.|++
T Consensus 122 --------~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle--------------~I~~~~~~~~~~~~~~~~~~ 179 (501)
T 1zo1_I 122 --------RVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLD--------------AILLQAEVLELKAVRKGMAS 179 (501)
T ss_dssp --------CTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHH--------------HTTTTCCCSTTTSCCCSBCE
T ss_pred --------HHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhh--------------hhhhhhhhhccccccccccc
Confidence 121222222211 01247999999999999998543 2221 2223345677889
Q ss_pred EEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC-CeeecccCCCCeEEEEeccCCcccceeeeEE
Q 010318 314 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD-DNRVRHAGPGENLRIRLSGIEEEDILSGFVL 390 (513)
Q Consensus 314 ~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~-~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl 390 (513)
+.|.+++ ++.|++++|+|.+|+|++||.|++++ ...+|++|... +.++++|.||+.|.+. |++. ....|+++
T Consensus 180 ~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~--~~~kVr~i~~~~g~~v~~a~~g~~V~i~--gl~~-~~~~Gd~~ 254 (501)
T 1zo1_I 180 GAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGF--EYGRVRAMRNELGQEVLEAGPSIPVEIL--GLSG-VPAAGDEV 254 (501)
T ss_dssp EEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEB--SSCEEEEECCTTTTSEEEECCSSCSSSE--EECS-CCCTTEEE
T ss_pred cceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEcc--ceeEEEEEEecCCCcCcEeccCCcEEEe--CCCC-CCCCCCEE
Confidence 9999988 57899999999999999999999865 45699999864 6799999999999853 4432 24689998
Q ss_pred ccCC
Q 010318 391 SSVA 394 (513)
Q Consensus 391 ~~~~ 394 (513)
+...
T Consensus 255 ~~~~ 258 (501)
T 1zo1_I 255 TVVR 258 (501)
T ss_dssp EEEC
T ss_pred EecC
Confidence 7654
No 27
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=1.7e-32 Score=293.19 Aligned_cols=279 Identities=19% Similarity=0.230 Sum_probs=190.3
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++||+|||||||+++|++..+.+....... .+ .. ....++|..+.|+.+|+|+......+.+.+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~-------~~-~~-~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~ 81 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVK-------GR-GS-NQHAKSDWMEMEKQRGISITTSVMQFPYHD 81 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC----------------------------------------CCTTEEEEEETT
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceee-------cC-cc-ccceeeccchhcccCCcceeeeEEEEEECC
Confidence 4679999999999999999999988766653221000 00 00 012356777889999999999999999999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
+.++|+|||||.+|...+.++++.+|++|+|+|+.+|. ..|+++++..+...++| +|+++||+|+...+. .
T Consensus 82 ~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~-------~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~-~ 152 (529)
T 2h5e_A 82 CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGV-------EDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP-M 152 (529)
T ss_dssp EEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCS-------CHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH-H
T ss_pred eEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccc-------hHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH-H
Confidence 99999999999999999999999999999999999985 36999999999989999 899999999965432 2
Q ss_pred HHHHHHHhhhHhhhhh------------------------c----cC---------------------------------
Q 010318 240 ERYDEIESKMTPFLKA------------------------S----GY--------------------------------- 258 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~------------------------~----g~--------------------------------- 258 (513)
+.++++.+.+...... + |.
T Consensus 153 ~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~ 232 (529)
T 2h5e_A 153 ELLDEVENELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELE 232 (529)
T ss_dssp HHHHHHHHHHCCEEEESEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccceecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccc
Confidence 2333333322100000 0 00
Q ss_pred --------------cccCCeeEEEeecccccccccccccCCCCCCCcchHHH-HhhhccCCCCC---------CCCCceE
Q 010318 259 --------------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFE-ALDRIEITPRD---------PNGPFRM 314 (513)
Q Consensus 259 --------------~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~-~l~~l~~~~~~---------~~~~~~~ 314 (513)
.....+|+++.||++|.|+.. |++ +++.+|.|... .+.||..
T Consensus 233 l~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~--------------LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~ 298 (529)
T 2h5e_A 233 LVKGASNEFDKELFLAGEITPVFFGTALGNFGVDH--------------MLDGLVEWAPAPMPRQTDTRTVEASEDKFTG 298 (529)
T ss_dssp HHHHHSCCCCHHHHHTTSEEEEEECBTTTTBSHHH--------------HHHHHHHHSCSSCCEEBSSCEECTTCCSCEE
T ss_pred hhhhhhhhhhHHHHHhCceeEEEeeecccCCCHHH--------------HHHHHHHhCCCCCcccccccccCCCCCCeEE
Confidence 001124666667777766665 344 34446655431 1468888
Q ss_pred EEEEEEc-----cCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----CeeecccCCCCeEEEEeccCCcccce
Q 010318 315 PIIDKFK-----DMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDIL 385 (513)
Q Consensus 315 ~i~~~~~-----~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~ 385 (513)
.|.++.. .+|++++|||.||+|+.||+|++.+.++..+|.+|+.+ +.++++|.|||+|++ .++ .+++
T Consensus 299 ~vfKi~~~~d~~~~G~i~~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i--~~l--~~~~ 374 (529)
T 2h5e_A 299 FVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQVRTAKDVVISDALTFMAGDRSHVEEAYPGDILGL--HNH--GTIQ 374 (529)
T ss_dssp EEEEECSSCCSSSSCCCEEEEEEESCEETTCEEEETTTTEEEECSCEECCCC-----CCEECTTCEEEE--CCS--SCCC
T ss_pred EEEEEeeccCcCCCceEEEEEEecCeEcCCCEEEEeeCCCEEEeceeeEEeCCCceEcceECCCCEEEE--ecc--CCCc
Confidence 8888742 47999999999999999999999999999999999975 678999999999985 554 4588
Q ss_pred eeeEEccCC
Q 010318 386 SGFVLSSVA 394 (513)
Q Consensus 386 ~G~vl~~~~ 394 (513)
.||+|++.+
T Consensus 375 ~Gdtl~~~~ 383 (529)
T 2h5e_A 375 IGDTFTQGE 383 (529)
T ss_dssp TTCEEESSC
T ss_pred cCCEeecCC
Confidence 999999865
No 28
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=3.1e-31 Score=292.44 Aligned_cols=275 Identities=23% Similarity=0.266 Sum_probs=199.0
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+|+||+|||||||+++|++..|.+..... . . ....++|..+.|+++|+|+......+.+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~--v-----~------~~~~~~d~~~~E~~~giTi~~~~~~~~~~ 75 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGE--V-----H------EGAATMDFMEQERERGITITAAVTTCFWK 75 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------------------CCEEEEEET
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccce--e-----c------CCceeccCchhhhhcccccccceEEEEEC
Confidence 356799999999999999999999988776543210 0 0 01356788889999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
++.++|||||||.+|...+.++++.+|++|+|||+..+.. .|+.+++..+...++| +++++||+|+...+
T Consensus 76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~-------~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~-- 145 (691)
T 1dar_A 76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVE-------PQSETVWRQAEKYKVP-RIAFANKMDKTGAD-- 145 (691)
T ss_dssp TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--
T ss_pred CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcc-------hhhHHHHHHHHHcCCC-EEEEEECCCcccCC--
Confidence 9999999999999999999999999999999999999853 6899999999999999 88999999996543
Q ss_pred HHHHHHHHhhhHhhhhhc--------------------------------c-----------------------------
Q 010318 239 KERYDEIESKMTPFLKAS--------------------------------G----------------------------- 257 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~--------------------------------g----------------------------- 257 (513)
+..+.+++...+... |
T Consensus 146 ---~~~~~~~l~~~l~~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e 222 (691)
T 1dar_A 146 ---LWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAAD 222 (691)
T ss_dssp ---HHHHHHHHHHTTCCCEEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHHhCCCccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence 222333332222100 0
Q ss_pred --------------C-------------cccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCC----
Q 010318 258 --------------Y-------------NVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---- 306 (513)
Q Consensus 258 --------------~-------------~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~---- 306 (513)
+ ....-+|+++.||++|.|+..| |..++..+|.|..
T Consensus 223 ~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~L-------------Ld~i~~~lPsP~~~~~~ 289 (691)
T 1dar_A 223 FDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFLGSALKNKGVQLL-------------LDAVVDYLPSPLDIPPI 289 (691)
T ss_dssp TCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEECBGGGTBSHHHH-------------HHHHHHHSCCTTTSCCE
T ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCcEeEEEEeecccCcCHHHH-------------HHHHHHhCCChhhcccc
Confidence 0 0001268899999999999875 3334556666643
Q ss_pred --------------CCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----Ceeeccc
Q 010318 307 --------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHA 366 (513)
Q Consensus 307 --------------~~~~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a 366 (513)
+.+.||.+.|.+++ +..|+++++||.+|+|+.||+|+..+.+...+|..|... ..++++|
T Consensus 290 ~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~ 369 (691)
T 1dar_A 290 KGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEEL 369 (691)
T ss_dssp EEECSSSCEEEECCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEE
T ss_pred cccCCCccccccccCCCCCcEEEEEEEEEcCCCCcEEEEEEeeeeEecCCEEEecCCCcEEEEceEEEEeCCCceEccee
Confidence 35789999999988 468999999999999999999999888888899998764 4689999
Q ss_pred CCCCeEEEEeccCCcccceeeeEEccCCCC
Q 010318 367 GPGENLRIRLSGIEEEDILSGFVLSSVAKP 396 (513)
Q Consensus 367 ~aG~~v~i~l~~~~~~~i~~G~vl~~~~~~ 396 (513)
.||++|++. |++ +++.||+|++.+.+
T Consensus 370 ~aGdI~~i~--gl~--~~~~Gdtl~~~~~~ 395 (691)
T 1dar_A 370 KAGDLGAVV--GLK--ETITGDTLVGEDAP 395 (691)
T ss_dssp ETTCEEEEE--CCS--SCCTTCEEEETTCC
T ss_pred cCCCEEEEe--Ccc--cCccCCEEecCCCc
Confidence 999999964 664 47889999987653
No 29
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.98 E-value=2.8e-32 Score=294.62 Aligned_cols=262 Identities=21% Similarity=0.371 Sum_probs=192.8
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC-
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~- 158 (513)
.+.++|+++||+|||||||+++|++.... + ...+|+|++++...+.+.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~---------------------------~----~e~ggiT~~ig~~~~~~~~ 51 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVA---------------------------S----REAGGITQHIGATEIPMDV 51 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHS---------------------------C----C----CCCBTTEEEEEHHH
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCc---------------------------c----ccCCceecccCeEEEeech
Confidence 46789999999999999999999643211 0 011456665555544331
Q ss_pred -----------------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCC
Q 010318 159 -----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 221 (513)
Q Consensus 159 -----------------~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip 221 (513)
...++|+|||||++|...+.++++.+|++|||+|+++|+. +||.+++.+++..++|
T Consensus 52 ~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~-------~qT~e~l~~l~~~~vP 124 (594)
T 1g7s_A 52 IEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFK-------PQTQEALNILRMYRTP 124 (594)
T ss_dssp HHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCC
T ss_pred hhhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-------HhHHHHHHHHHHcCCe
Confidence 2269999999999999999999999999999999999953 7999999999999999
Q ss_pred eEEEEEeeccCCCCCch------------------HHHHHHHHhhhHhhhhhccCcc---------cCCeeEEEeecccc
Q 010318 222 KLLLVVNKMDDHTVNWS------------------KERYDEIESKMTPFLKASGYNV---------KKDVQFLPISGLMG 274 (513)
Q Consensus 222 ~~ivviNK~D~~~~~~~------------------~~~~~~i~~~l~~~l~~~g~~~---------~~~~~iipiSa~~g 274 (513)
+|+|+||||+.. .|. ...+.+...++...|...++.. ...++++|+||++|
T Consensus 125 -iIVViNKiDl~~-~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG 202 (594)
T 1g7s_A 125 -FVVAANKIDRIH-GWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG 202 (594)
T ss_dssp -EEEEEECGGGST-TCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC
T ss_pred -EEEEeccccccc-ccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC
Confidence 999999999953 232 1234444445555555555421 23579999999999
Q ss_pred cccccccccCCCCCCCcchHHHHhhh-cc-CCCCCCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCc-
Q 010318 275 LNMKTRVDKSLCPWWNGPCLFEALDR-IE-ITPRDPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA- 349 (513)
Q Consensus 275 ~gi~~l~~~~~~~w~~g~~L~~~l~~-l~-~~~~~~~~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~- 349 (513)
.|+.+|++. +...+.. ++ ....+.+.|+++.|.+++ ++.|++++|+|.+|+|++||.|+++|.+.
T Consensus 203 ~GI~eLl~~----------I~~~~~~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~ 272 (594)
T 1g7s_A 203 EGIPELLTM----------LMGLAQQYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDV 272 (594)
T ss_dssp TTHHHHHHH----------HHHHHHHHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSE
T ss_pred CCchhHHHH----------HHhhccccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCc
Confidence 999997542 3333322 11 112345789999999987 57899999999999999999999999876
Q ss_pred -EEEEEEEEEC------------CeeecccC--CCCeEEEEeccCCcccceeeeEEccCCC
Q 010318 350 -QVKVLAIYCD------------DNRVRHAG--PGENLRIRLSGIEEEDILSGFVLSSVAK 395 (513)
Q Consensus 350 -~~~V~~i~~~------------~~~v~~a~--aG~~v~i~l~~~~~~~i~~G~vl~~~~~ 395 (513)
.++|++|... ..++++|. +|+.++ +.+++ ++..|+.|+...+
T Consensus 273 ~~~rV~~i~~~~~~~elr~~~~~~~~v~ea~~~aG~~v~--~~~l~--~~~~Gd~l~~~~~ 329 (594)
T 1g7s_A 273 ISTRIRSLLKPRPLEEMRESRKKFQKVDEVVAAAGIKIV--APGID--DVMAGSPLRVVTD 329 (594)
T ss_dssp EEEECCEEEEECCCC----CCCSEEECSEEESSEEEEEE--CSSCT--TBCTTCEEEECSS
T ss_pred eeEEEeEEEeccccchhhhccCCceEccEEcCCCCcEEE--EcccC--CCCCCCEEEecCC
Confidence 4599999763 35788887 566555 45543 4689999988754
No 30
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.97 E-value=2e-30 Score=286.13 Aligned_cols=274 Identities=23% Similarity=0.259 Sum_probs=198.1
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+|+||+|+|||||+++|++..+.+..... . . .....+|..+.|+++|+|+......+.+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~------v-~------~~~~~~D~~~~e~~~giTi~~~~~~~~~~ 73 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGE------T-H------EGASQMDWMEQEQDRGITITSAATTAAWE 73 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC--------------------------------------CCSEEEEEET
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCcccccc------c-c------CCceecccchhhhhcCceEeeeeEEEEEC
Confidence 356799999999999999999999988776543210 0 0 01356778888999999999999999999
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
++.++|||||||.+|...+.++++.+|++|+|+|+..+.. .++..++..+...++| +|+++||+|+...+
T Consensus 74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~-------~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~~-- 143 (693)
T 2xex_A 74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVE-------PQTETVWRQATTYGVP-RIVFVNKMDKLGAN-- 143 (693)
T ss_dssp TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSC-------HHHHHHHHHHHHTTCC-EEEEEECTTSTTCC--
T ss_pred CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCc-------HHHHHHHHHHHHcCCC-EEEEEECCCccccc--
Confidence 9999999999999999999999999999999999999853 6899999999999999 88999999996543
Q ss_pred HHHHHHHHhhhHhhhhhcc--------------------------Cc---------------------------------
Q 010318 239 KERYDEIESKMTPFLKASG--------------------------YN--------------------------------- 259 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g--------------------------~~--------------------------------- 259 (513)
+..+.++++..+.... |.
T Consensus 144 ---~~~~~~~l~~~l~~~~~~~~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e 220 (693)
T 2xex_A 144 ---FEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAE 220 (693)
T ss_dssp ---HHHHHHHHHHHHCCCEEESEEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHT
T ss_pred ---hHHHHHHHHHHhCCCceeEEeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhh
Confidence 2233333333322100 00
Q ss_pred -----------------------------ccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCC----
Q 010318 260 -----------------------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPR---- 306 (513)
Q Consensus 260 -----------------------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~---- 306 (513)
...-+|+++.||++|.|+..| |..+++.+|.|..
T Consensus 221 ~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~gSA~~~~Gv~~L-------------Ld~i~~~lPsP~~~~~~ 287 (693)
T 2xex_A 221 TSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLM-------------LDAVIDYLPSPLDVKPI 287 (693)
T ss_dssp TCHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHH-------------HHHHHHHSCCGGGSCCE
T ss_pred CCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeeEEEeecccCcCHHHH-------------HHHHHHHCCCchhcccc
Confidence 001257788888888888764 2334455665532
Q ss_pred ----------------CCCCCceEEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----Ceeec
Q 010318 307 ----------------DPNGPFRMPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVR 364 (513)
Q Consensus 307 ----------------~~~~~~~~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~ 364 (513)
+.+.||.+.|.+++ +..|.++++||.||+|+.||+|+....++..+|.+|... ..+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~ 367 (693)
T 2xex_A 288 IGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEID 367 (693)
T ss_dssp EEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECS
T ss_pred cccCCCccccceeecCCCCCceEEEEEEeeecCCCceEEEEEEEeeeEecCCEEEecCCCceEEeceEEEEeCCCceEcc
Confidence 25789999999988 467999999999999999999999887888899999764 46899
Q ss_pred ccCCCCeEEEEeccCCcccceeeeEEccCCC
Q 010318 365 HAGPGENLRIRLSGIEEEDILSGFVLSSVAK 395 (513)
Q Consensus 365 ~a~aG~~v~i~l~~~~~~~i~~G~vl~~~~~ 395 (513)
+|.||++|++. |++ +++.||+|++.+.
T Consensus 368 ~~~aGdI~~i~--gl~--~~~~GdTl~~~~~ 394 (693)
T 2xex_A 368 TVYSGDIAAAV--GLK--DTGTGDTLCGEKN 394 (693)
T ss_dssp EEETTCEEEEE--SCS--SCCTTCEEEETTC
T ss_pred ccCcCCEEEEe--Ccc--cCccCCEEecCCC
Confidence 99999999964 664 4788999998663
No 31
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.97 E-value=1.5e-30 Score=286.11 Aligned_cols=275 Identities=24% Similarity=0.294 Sum_probs=212.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+..+|+|+||+|||||||+++|++..+.+... |.- .....++|..+.++.+|+|+......+.+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~------------G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~ 73 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERR------------GRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG 73 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSC------------CCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETT
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCcc------------cee-cCCcccccCCHHHHhcCCeEEecceEEeeCC
Confidence 457899999999999999999999877654321 110 1224567888889999999998888899999
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
..++|+|||||.+|...+.++++.+|++++|+|+..|. ..|+++++.++...++| +|+++||+|+. .+ ..
T Consensus 74 ~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~-------~~qt~~~~~~~~~~~ip-~ilv~NKiD~~-~~-~~ 143 (665)
T 2dy1_A 74 HRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGV-------QVGTERAWTVAERLGLP-RMVVVTKLDKG-GD-YY 143 (665)
T ss_dssp EEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCS-------CHHHHHHHHHHHHTTCC-EEEEEECGGGC-CC-HH
T ss_pred EEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCccc-------chhHHHHHHHHHHccCC-EEEEecCCchh-hh-HH
Confidence 99999999999999999999999999999999999984 37999999999999999 88999999995 33 22
Q ss_pred HHHHHHHhhhH-------------------------------------------------------------------hh
Q 010318 240 ERYDEIESKMT-------------------------------------------------------------------PF 252 (513)
Q Consensus 240 ~~~~~i~~~l~-------------------------------------------------------------------~~ 252 (513)
...+++.+.+. .+
T Consensus 144 ~~~~~l~~~l~~~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~ 223 (665)
T 2dy1_A 144 ALLEDLRSTLGPILPIDLPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKY 223 (665)
T ss_dssp HHHHHHHHHHCSEEECEEEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCcceEEeeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 23333332221 00
Q ss_pred hhhccCc-------------ccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCC-CCCCceEEEEE
Q 010318 253 LKASGYN-------------VKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRD-PNGPFRMPIID 318 (513)
Q Consensus 253 l~~~g~~-------------~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~-~~~~~~~~i~~ 318 (513)
+....+. ....+|++++||++|.|+..+ |..++..+|.|... .+.||.+.|.+
T Consensus 224 l~~~~l~~~~~~~~~~~~~~~~~~~pv~~~SA~~~~Gv~~L-------------l~~i~~~lp~p~~~~~~~p~~~~V~k 290 (665)
T 2dy1_A 224 LEGEEVTGEALEKAFHEAVRRGLLYPVALASGEREIGVLPL-------------LELILEALPSPTERFGDGPPLAKVFK 290 (665)
T ss_dssp HHTCCCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBSHHHH-------------HHHHHHHSCCHHHHHCSCSCEEEEEE
T ss_pred HCCCCCCHHHHHHHHHHHHHhCCeeEEEEeecccCcCHHHH-------------HHHHHHhCCCccccCCCCCeEEEEEE
Confidence 0000000 001268999999999999875 33344556665433 67899999999
Q ss_pred EE--ccCCeEEEEEEEeeeecCCCEEEEecCCcEEEEEEEEEC----CeeecccCCCCeEEEEeccCCcccceeeeEEcc
Q 010318 319 KF--KDMGTVVMGKVESGSVREGDSLLVMPNKAQVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGFVLSS 392 (513)
Q Consensus 319 ~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~vl~~ 392 (513)
++ +..|++++|||.+|+|+.||+|++.+ ...+|.+|... +.++++|.||++|++ .|++ ++++||+|++
T Consensus 291 ~~~d~~~G~~~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i--~gl~--~~~~Gdtl~~ 364 (665)
T 2dy1_A 291 VQVDPFMGQVAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGV--PKAE--GLHRGMVLWQ 364 (665)
T ss_dssp EEEETTTEEEEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEE--SSCT--TCCTTCEEES
T ss_pred EEEcCCCCeEEEEEEcccEEecCCEEEcCC--CeEEEeEEEEEeCCCeeECCEECCCCEEEE--eCCc--cCccCCEEec
Confidence 88 46899999999999999999999877 66789988763 568999999999996 4654 5889999998
Q ss_pred CCCC
Q 010318 393 VAKP 396 (513)
Q Consensus 393 ~~~~ 396 (513)
.+.+
T Consensus 365 ~~~~ 368 (665)
T 2dy1_A 365 GEKP 368 (665)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 7653
No 32
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.95 E-value=1.6e-27 Score=268.01 Aligned_cols=290 Identities=19% Similarity=0.271 Sum_probs=197.8
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
...+.++|+|+||+|||||||+++|++..|.+..... | ....+|..+.|+++|+|+......+.+
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~----------~-----~~~~~D~~~~E~~rgiTI~~~~~~~~~ 79 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKA----------G-----EARFTDTRKDEQERGITIKSTAISLYS 79 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC---------------------------------CCCBCCCEEEEEE
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccC----------C-----CceeecCchhhhhcceeEeeceeEEEe
Confidence 3456799999999999999999999999887765320 1 124578888999999999888777766
Q ss_pred C----------------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCC
Q 010318 158 E----------------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVT 221 (513)
Q Consensus 158 ~----------------~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip 221 (513)
. ++.++|||||||.+|...+.++++.+|++|+|+|+.+|.. .|+..++..+...++|
T Consensus 80 ~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~-------~qt~~~~~~~~~~~~p 152 (842)
T 1n0u_A 80 EMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVC-------VQTETVLRQALGERIK 152 (842)
T ss_dssp ECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSC-------HHHHHHHHHHHHTTCE
T ss_pred cccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC
Confidence 5 6889999999999999999999999999999999999854 6899999888889999
Q ss_pred eEEEEEeeccCCCCC--ch----HHHHHHHHhhhHhhhhhcc--------CcccCCeeEEEeeccccccccc--------
Q 010318 222 KLLLVVNKMDDHTVN--WS----KERYDEIESKMTPFLKASG--------YNVKKDVQFLPISGLMGLNMKT-------- 279 (513)
Q Consensus 222 ~~ivviNK~D~~~~~--~~----~~~~~~i~~~l~~~l~~~g--------~~~~~~~~iipiSa~~g~gi~~-------- 279 (513)
+|+++||||+...+ ++ ...+..+.++++..+..+. +.+ ...++...||++|+++.-
T Consensus 153 -~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p-~~~~v~~~sa~~g~~~~~~~f~~~y~ 230 (842)
T 1n0u_A 153 -PVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYP-ARGTVAFGSGLHGWAFTIRQFATRYA 230 (842)
T ss_dssp -EEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCG-GGTCEEEEETTTTEEEEHHHHHHHHH
T ss_pred -eEEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHHhhccccccCceeece-EEeeeEEeecccccccchhhhhhhcc
Confidence 88999999984211 11 3346666777766664321 221 012566789999876420
Q ss_pred -cccc-----CCCCC---C-C----------------------------------------------------c------
Q 010318 280 -RVDK-----SLCPW---W-N----------------------------------------------------G------ 291 (513)
Q Consensus 280 -l~~~-----~~~~w---~-~----------------------------------------------------g------ 291 (513)
-+.. ....| | + |
T Consensus 231 ~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~ 310 (842)
T 1n0u_A 231 KKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGD 310 (842)
T ss_dssp TTTTSCHHHHHHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGG
T ss_pred hhcCCCHHHHHHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHH
Confidence 0000 00012 0 0 0
Q ss_pred ---------------------chHHH-HhhhccCCC-------------------------CCCCCCceEEEEEEE--cc
Q 010318 292 ---------------------PCLFE-ALDRIEITP-------------------------RDPNGPFRMPIIDKF--KD 322 (513)
Q Consensus 292 ---------------------~~L~~-~l~~l~~~~-------------------------~~~~~~~~~~i~~~~--~~ 322 (513)
..|++ +++.+|.|. .+.+.||.+.|..++ +.
T Consensus 311 e~~~~~~~l~~~~~~~~~pv~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~ 390 (842)
T 1n0u_A 311 EKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSD 390 (842)
T ss_dssp GGGCCHHHHHHHHHHHHSBHHHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSS
T ss_pred HHhhhhHHHHHHHHhhccchHHHHHHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCC
Confidence 11222 223355542 245789999999987 35
Q ss_pred CCe-EEEEEEEeeeecCCCEEEEecCC------c---EEEEEEEEEC----CeeecccCCCCeEEEEeccCCcccceeee
Q 010318 323 MGT-VVMGKVESGSVREGDSLLVMPNK------A---QVKVLAIYCD----DNRVRHAGPGENLRIRLSGIEEEDILSGF 388 (513)
Q Consensus 323 ~G~-vv~g~v~sG~l~~gd~v~~~p~~------~---~~~V~~i~~~----~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 388 (513)
.|. +.++||.||+|+.||.|.+...+ . ..+|..|... ..++++|.||++|+ +.|++...++.|
T Consensus 391 ~G~~l~~~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~a--i~gl~~~~~~t~- 467 (842)
T 1n0u_A 391 KGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIG--LVGIDQFLLKTG- 467 (842)
T ss_dssp TTCEEEEEEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEE--EESCTTTCCSSE-
T ss_pred CCceEEEEEEEeeeecCCCEEEeccccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEE--EEccccceecce-
Confidence 796 89999999999999999875432 2 5788888765 56899999999998 467655434556
Q ss_pred EEccCC
Q 010318 389 VLSSVA 394 (513)
Q Consensus 389 vl~~~~ 394 (513)
+|++.+
T Consensus 468 Tl~~~~ 473 (842)
T 1n0u_A 468 TLTTSE 473 (842)
T ss_dssp EEESCT
T ss_pred eecCCC
Confidence 888754
No 33
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.83 E-value=8.6e-21 Score=173.10 Aligned_cols=158 Identities=27% Similarity=0.373 Sum_probs=113.3
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|.+|+|||||+++|+...- . .....++|.+.....+..++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~ 54 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKV--T-----------------------------EQEAGGITQHIGAYQVTVND 54 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCS--S-----------------------------CSSCCSSSTTCCCCEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcc--c-----------------------------cCCCCceeEeeeEEEEEeCC
Confidence 4678999999999999999999953211 1 01113455555556677788
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchH
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSK 239 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~ 239 (513)
..+.|+||||+++|...+.+.+..+|++|+|+|++.+.. .++.+.+..+...++| +++|+||+|+... ..
T Consensus 55 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~--~~ 124 (178)
T 2lkc_A 55 KKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVM-------PQTVEAINHAKAANVP-IIVAINKMDKPEA--NP 124 (178)
T ss_dssp EEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCC-------HHHHHHHHHHGGGSCC-EEEEEETTTSSCS--CH
T ss_pred ceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCc-------HHHHHHHHHHHhCCCC-EEEEEECccCCcC--CH
Confidence 999999999999998877788889999999999988743 4677777777777899 9999999999432 22
Q ss_pred HHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
........+...+....+ ..++++++||++|.|+.++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~gv~~l~~ 163 (178)
T 2lkc_A 125 DRVMQELMEYNLVPEEWG----GDTIFCKLSAKTKEGLDHLLE 163 (178)
T ss_dssp HHHHHHHTTTTCCBTTTT----SSEEEEECCSSSSHHHHHHHH
T ss_pred HHHHHHHHhcCcChhHcC----CcccEEEEecCCCCCHHHHHH
Confidence 222222222221111211 136899999999999998754
No 34
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.82 E-value=2.9e-20 Score=195.01 Aligned_cols=158 Identities=19% Similarity=0.290 Sum_probs=115.2
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+++|++|+|||||+|+|++..... .....|+|.+.....+.+++
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~------------------------------~~~~~gtT~d~~~~~~~~~~ 222 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVI------------------------------VSNVAGTTRDAVDTSFTYNQ 222 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEE------------------------------EC---------CCEEEEETT
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCcee------------------------------ecCCCCceeeeeEEEEEECC
Confidence 356899999999999999999996432211 11236788888888889999
Q ss_pred eEEEEEeCCCC----------cchHHH-HHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010318 160 TRFTILDAPGH----------KSYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (513)
Q Consensus 160 ~~i~liDtPGh----------~~f~~~-~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN 228 (513)
..+.|+||||+ +.|... .+.+++.+|++|+|+|++++.. .|+.+++..+...++| +|+|+|
T Consensus 223 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s-------~~~~~~~~~~~~~~~~-iiiv~N 294 (436)
T 2hjg_A 223 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-------EQDKRIAGYAHEAGKA-VVIVVN 294 (436)
T ss_dssp EEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCE-EEEEEE
T ss_pred eEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCc-------HHHHHHHHHHHHcCCc-EEEEEE
Confidence 99999999998 445433 3457889999999999999854 4778888888888988 999999
Q ss_pred eccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 229 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+|+. +.....++++.+++...+...+ .++++++||++|.|+.++++
T Consensus 295 K~Dl~--~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~SA~tg~~v~~l~~ 341 (436)
T 2hjg_A 295 KWDAV--DKDESTMKEFEENIRDHFQFLD-----YAPILFMSALTKKRIHTLMP 341 (436)
T ss_dssp CGGGS--CCCTTHHHHHHHHHHHHCGGGT-----TSCEEECCTTTCTTGGGHHH
T ss_pred CccCC--CcchHHHHHHHHHHHHhcccCC-----CCCEEEEecccCCCHHHHHH
Confidence 99994 3333345556666665555443 35899999999999999754
No 35
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.81 E-value=2.1e-19 Score=179.89 Aligned_cols=156 Identities=21% Similarity=0.217 Sum_probs=111.6
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
+.+.-.|+++|++|+|||||+|+|++....+.. ...+.|.+.....+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s------------------------------~~~~tT~~~~~~~~~~~ 56 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIIS------------------------------PKAGTTRMRVLGVKNIP 56 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCC------------------------------SSSCCCCSCEEEEEEET
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccC------------------------------CCCCceeeEEEEEEecC
Confidence 456789999999999999999999654322111 12556666666667777
Q ss_pred -CeEEEEEeCCCCcch----------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHH-HHHHHHcCCCeEEEE
Q 010318 159 -TTRFTILDAPGHKSY----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREH-VMLAKTLGVTKLLLV 226 (513)
Q Consensus 159 -~~~i~liDtPGh~~f----------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~-l~~~~~~~ip~~ivv 226 (513)
+.++.|+||||+.++ ...+..++..+|++|+|+|++++.. .++... +..+...++| +|+|
T Consensus 57 ~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~-------~~~~~~~~~~l~~~~~p-vilV 128 (308)
T 3iev_A 57 NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWR-------PRDEEIYQNFIKPLNKP-VIVV 128 (308)
T ss_dssp TTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSC-------HHHHHHHHHHTGGGCCC-EEEE
T ss_pred CCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCC-------chhHHHHHHHHHhcCCC-EEEE
Confidence 899999999998553 4666777889999999999998742 456666 6667777899 8999
Q ss_pred EeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 227 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 227 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+||+|+.. + ........+.+.. .++ ...+++|+||++|.|+.++++
T Consensus 129 ~NK~Dl~~-~--~~~~~~~~~~l~~---~~~----~~~~i~~vSA~~g~gv~~L~~ 174 (308)
T 3iev_A 129 INKIDKIG-P--AKNVLPLIDEIHK---KHP----ELTEIVPISALKGANLDELVK 174 (308)
T ss_dssp EECGGGSS-S--GGGGHHHHHHHHH---HCT----TCCCEEECBTTTTBSHHHHHH
T ss_pred EECccCCC-C--HHHHHHHHHHHHH---hcc----CCCeEEEEeCCCCCCHHHHHH
Confidence 99999941 1 1222233333332 222 124799999999999998644
No 36
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.80 E-value=1.1e-19 Score=191.62 Aligned_cols=159 Identities=19% Similarity=0.299 Sum_probs=121.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
....++|+++|++|+|||||+++|+...... .....|+|.+.....+..+
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~------------------------------~~~~~gtt~~~~~~~~~~~ 241 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVI------------------------------VSNVAGTTRDAVDTSFTYN 241 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEE------------------------------ECC------CTTSEEEEET
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccc------------------------------cCCCCCeEEEEEEEEEEEC
Confidence 3467899999999999999999996432211 1122677888777888889
Q ss_pred CeEEEEEeCCC----------CcchHHH-HHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEE
Q 010318 159 TTRFTILDAPG----------HKSYVPN-MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 227 (513)
Q Consensus 159 ~~~i~liDtPG----------h~~f~~~-~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivvi 227 (513)
+..++|+|||| ++.|... .+.++..+|++|+|+|+.++.. .|+.+++.++...++| +|+|+
T Consensus 242 ~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~-------~~~~~~~~~~~~~~~~-~ilv~ 313 (456)
T 4dcu_A 242 QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGII-------EQDKRIAGYAHEAGKA-VVIVV 313 (456)
T ss_dssp TEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCE-EEEEE
T ss_pred CceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcC-------HHHHHHHHHHHHcCCC-EEEEE
Confidence 99999999999 5777554 4457889999999999999854 5888999999999998 99999
Q ss_pred eeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 228 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 228 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
||+|+. +.....++++.+.+...+...+ .++++++||++|.|+.++++
T Consensus 314 NK~Dl~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~SA~~g~gv~~l~~ 361 (456)
T 4dcu_A 314 NKWDAV--DKDESTMKEFEENIRDHFQFLD-----YAPILFMSALTKKRIHTLMP 361 (456)
T ss_dssp ECGGGS--CCCSSHHHHHHHHHHHHCGGGT-----TSCEEECCTTTCTTGGGHHH
T ss_pred EChhcC--CCchHHHHHHHHHHHHhcccCC-----CCCEEEEcCCCCcCHHHHHH
Confidence 999994 3344556677777776666554 35899999999999999765
No 37
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.80 E-value=1.6e-19 Score=171.35 Aligned_cols=161 Identities=17% Similarity=0.168 Sum_probs=109.6
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEE-e
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE-T 157 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~-~ 157 (513)
....++|+++|++|+|||||+++|+..... + ......|.|.+.....+. .
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~-----------------------~------~~~~~~~~t~~~~~~~~~~~ 76 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRL-----------------------A------FASKTPGRTQHINYFSVGPA 76 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSS-----------------------S------CTTCCCCSCCCEEEEEESCT
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcc-----------------------e------eecCCCCcccceEEEEecCC
Confidence 345689999999999999999999543210 0 011124566665555555 5
Q ss_pred CCeEEEEEeCCCCcc-------------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEE
Q 010318 158 ETTRFTILDAPGHKS-------------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 224 (513)
Q Consensus 158 ~~~~i~liDtPGh~~-------------f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~i 224 (513)
.+..+.|+||||+.. +....++....+|++|+|+|+.++.. ....+.+..+...++| +|
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~l~~~~~p-~i 148 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLT-------ELDRRMIEWFAPTGKP-IH 148 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHGGGCCC-EE
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCC-------HHHHHHHHHHHhcCCC-EE
Confidence 678999999999632 33444555566899999999998732 3566667777778899 99
Q ss_pred EEEeeccCCCCCchHHHHHHHHhhhHhhhhhc---cCcccCCeeEEEeecccccccccccc
Q 010318 225 LVVNKMDDHTVNWSKERYDEIESKMTPFLKAS---GYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 225 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~---g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+|+||+|+.. ........+.+...+..+ +. ....+++++||++|.|+.++++
T Consensus 149 ~v~nK~Dl~~----~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~SA~~g~gv~~l~~ 203 (223)
T 4dhe_A 149 SLLTKCDKLT----RQESINALRATQKSLDAYRDAGY--AGKLTVQLFSALKRTGLDDAHA 203 (223)
T ss_dssp EEEECGGGSC----HHHHHHHHHHHHHHHHHHHHHTC--CSCEEEEEEBTTTTBSHHHHHH
T ss_pred EEEeccccCC----hhhHHHHHHHHHHHHHhhhhccc--CCCCeEEEeecCCCcCHHHHHH
Confidence 9999999942 223333444444444432 10 1246899999999999998643
No 38
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.80 E-value=5.4e-19 Score=176.10 Aligned_cols=151 Identities=18% Similarity=0.129 Sum_probs=105.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+...|+++|++|+|||||+|+|++....+... ..+.|.+.....+.+.+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~------------------------------~~~tTr~~i~~i~~~~~ 54 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISP------------------------------RPQTTRKRLRGILTEGR 54 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS------------------------------SSCCCCSCEEEEEEETT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecC------------------------------CCCceeEEEEEEEEeCC
Confidence 456789999999999999999997543322110 12333333333456678
Q ss_pred eEEEEEeCCCCcc--------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEee
Q 010318 160 TRFTILDAPGHKS--------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNK 229 (513)
Q Consensus 160 ~~i~liDtPGh~~--------f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK 229 (513)
.+++|+||||+.+ |......+++.+|++|+|+|++++.. ..+...+..++.. ++| +|+|+||
T Consensus 55 ~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~-------~~~~~i~~~l~~~~~~~p-~ilV~NK 126 (301)
T 1wf3_A 55 RQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPT-------PEDELVARALKPLVGKVP-ILLVGNK 126 (301)
T ss_dssp EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCC-------HHHHHHHHHHGGGTTTSC-EEEEEEC
T ss_pred cEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCC-------hHHHHHHHHHHhhcCCCC-EEEEEEC
Confidence 9999999999877 56677778899999999999998732 3555555667666 888 8999999
Q ss_pred ccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 230 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 230 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+|+... ... +.+.+..+ .+ ..+++|+||++|.|+.++++
T Consensus 127 ~Dl~~~--~~~----~~~~~~~~---~~-----~~~~~~iSA~~g~gv~~l~~ 165 (301)
T 1wf3_A 127 LDAAKY--PEE----AMKAYHEL---LP-----EAEPRMLSALDERQVAELKA 165 (301)
T ss_dssp GGGCSS--HHH----HHHHHHHT---ST-----TSEEEECCTTCHHHHHHHHH
T ss_pred cccCCc--hHH----HHHHHHHh---cC-----cCcEEEEeCCCCCCHHHHHH
Confidence 999432 110 22222222 22 24799999999999988643
No 39
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.79 E-value=1.1e-18 Score=156.24 Aligned_cols=145 Identities=21% Similarity=0.300 Sum_probs=102.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
++|+++|.+|+|||||+++|....... .....+.|.+.....+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 51 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAV------------------------------VADVPGVTRDLKEGVVETDRGRF 51 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------------------------------------CCEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeee------------------------------ccCCCCceecceEEEEEeCCceE
Confidence 689999999999999999995432110 11124556666666677788899
Q ss_pred EEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC
Q 010318 163 TILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 163 ~liDtPGh~~-------f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 235 (513)
.|+||||+.. +...+...++.+|++|+|+|++.+.. ....+....+...++| +++|+||+|+...
T Consensus 52 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 52 LLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELT-------QADYEVAEYLRRKGKP-VILVATKVDDPKH 123 (161)
T ss_dssp EEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCC-------HHHHHHHHHHHHHTCC-EEEEEECCCSGGG
T ss_pred EEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCccc-------HhHHHHHHHHHhcCCC-EEEEEECcccccc
Confidence 9999999987 45556667889999999999998632 2445566667777888 9999999999321
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.+++..+. ++++. +++++||++|.|+.+++
T Consensus 124 ----------~~~~~~~~-~~~~~-----~~~~~Sa~~~~gv~~l~ 153 (161)
T 2dyk_A 124 ----------ELYLGPLY-GLGFG-----DPIPTSSEHARGLEELL 153 (161)
T ss_dssp ----------GGGCGGGG-GGSSC-----SCEECBTTTTBSHHHHH
T ss_pred ----------hHhHHHHH-hCCCC-----CeEEEecccCCChHHHH
Confidence 12333333 44432 69999999999999863
No 40
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.78 E-value=3.5e-19 Score=175.28 Aligned_cols=148 Identities=20% Similarity=0.253 Sum_probs=106.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
+.++|+++|++|+|||||+|+|.+... ......|+|++.....+.+.+.
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-------------------------------~v~~~~g~t~~~~~~~~~~~~~ 50 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-------------------------------RVGNWAGVTVERKEGQFSTTDH 50 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-------------------------------EEEECTTSSSEEEEEEEECSSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccCCCCCeeEEEEEEEEEeCCC
Confidence 458999999999999999999943211 0112368888888888888899
Q ss_pred EEEEEeCCCCcchHH------------HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe
Q 010318 161 RFTILDAPGHKSYVP------------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN 228 (513)
Q Consensus 161 ~i~liDtPGh~~f~~------------~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN 228 (513)
.+.|+||||+.+|.. ........+|++|+|+|++.. ......+..+...++| +|+|+|
T Consensus 51 ~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~---------~~~~~~~~~l~~~~~p-~ivv~N 120 (274)
T 3i8s_A 51 QVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL---------ERNLYLTLQLLELGIP-CIVALN 120 (274)
T ss_dssp EEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH---------HHHHHHHHHHHHHTCC-EEEEEE
T ss_pred ceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh---------HHHHHHHHHHHhcCCC-EEEEEE
Confidence 999999999988651 111123689999999999873 2455666677778999 999999
Q ss_pred eccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 229 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+|+.... .+...+..+.+.+| ++++++||++|.|+.++++
T Consensus 121 K~Dl~~~~-------~~~~~~~~l~~~lg------~~~i~~SA~~g~gi~el~~ 161 (274)
T 3i8s_A 121 MLDIAEKQ-------NIRIEIDALSARLG------CPVIPLVSTRGRGIEALKL 161 (274)
T ss_dssp CHHHHHHT-------TEEECHHHHHHHHT------SCEEECCCGGGHHHHHHHH
T ss_pred Cccchhhh-------hHHHHHHHHHHhcC------CCEEEEEcCCCCCHHHHHH
Confidence 99983211 01111222233333 4799999999999998643
No 41
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.77 E-value=2.8e-19 Score=174.14 Aligned_cols=146 Identities=21% Similarity=0.188 Sum_probs=103.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
++|+++|++|+|||||+|+|.+..- ......|+|++.....+.+++..+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~-------------------------------~v~~~pg~Tv~~~~~~~~~~~~~~ 50 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ-------------------------------RVGNWPGVTVEKKTGEFLLGEHLI 50 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE-------------------------------EEEECTTSSSEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-------------------------------CccCCCCceEEEEEEEEEECCeEE
Confidence 5899999999999999999943210 011226888888888888899999
Q ss_pred EEEeCCCCcchHHH----------HHHhh--hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010318 163 TILDAPGHKSYVPN----------MISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 230 (513)
Q Consensus 163 ~liDtPGh~~f~~~----------~~~~~--~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 230 (513)
.|+||||+.+|... ....+ ..+|++|+|+|++.. .........+..+++| +|+|+||+
T Consensus 51 ~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~---------~~~~~l~~~l~~~~~p-vilv~NK~ 120 (256)
T 3iby_A 51 EITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHL---------ERHLYLTSQLFELGKP-VVVALNMM 120 (256)
T ss_dssp EEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGH---------HHHHHHHHHHTTSCSC-EEEEEECH
T ss_pred EEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCc---------hhHHHHHHHHHHcCCC-EEEEEECh
Confidence 99999999887542 11223 689999999999863 2445555666677899 99999999
Q ss_pred cCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 231 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 231 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+.... .+...+..+.+.+| ++++++||++|.|+.++++
T Consensus 121 Dl~~~~-------~~~~~~~~l~~~lg------~~vi~~SA~~g~gi~el~~ 159 (256)
T 3iby_A 121 DIAEHR-------GISIDTEKLESLLG------CSVIPIQAHKNIGIPALQQ 159 (256)
T ss_dssp HHHHHT-------TCEECHHHHHHHHC------SCEEECBGGGTBSHHHHHH
T ss_pred hcCCcC-------CcHHHHHHHHHHcC------CCEEEEECCCCCCHHHHHH
Confidence 983211 01111222223333 4899999999999998643
No 42
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.77 E-value=5.1e-18 Score=154.60 Aligned_cols=153 Identities=17% Similarity=0.091 Sum_probs=100.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
++.++|+++|++|+|||||+++|....- .. +....++.+.....+...+
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~--~~-----------------------------~~~~t~~~~~~~~~~~~~~ 52 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETF--GK-----------------------------QYKQTIGLDFFLRRITLPG 52 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGT--TH-----------------------------HHHHTTTSSEEEEEEEETT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcC--CC-----------------------------CCCCceeEEEEEEEEEeCC
Confidence 4678999999999999999999954221 00 0001111222223344444
Q ss_pred ---eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEEEEeecc
Q 010318 160 ---TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMD 231 (513)
Q Consensus 160 ---~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ivviNK~D 231 (513)
..+.|+||||++.|...+...++.+|++|+|+|+++... ++ .....+..+.. .+.|.+++|+||+|
T Consensus 53 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~~iilv~nK~D 126 (178)
T 2hxs_A 53 NLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQS---FE---NLEDWYTVVKKVSEESETQPLVALVGNKID 126 (178)
T ss_dssp TEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHHHHTCCCEEEEEEECGG
T ss_pred CCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhcccCCCCeEEEEEEccc
Confidence 789999999999998888888899999999999987531 11 22233333333 25665789999999
Q ss_pred CCCCC-chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+.... .+.+ +...+.+..+ ++++++||++|.|+.++++
T Consensus 127 l~~~~~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 165 (178)
T 2hxs_A 127 LEHMRTIKPE-------KHLRFCQENG------FSSHFVSAKTGDSVFLCFQ 165 (178)
T ss_dssp GGGGCSSCHH-------HHHHHHHHHT------CEEEEECTTTCTTHHHHHH
T ss_pred cccccccCHH-------HHHHHHHHcC------CcEEEEeCCCCCCHHHHHH
Confidence 94311 1111 2223333333 4799999999999998643
No 43
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.77 E-value=6.5e-19 Score=175.65 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=103.9
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+..+|+++|++|+|||||+|+|++....+.. + ..+.|.+.....+.+++
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s------------------------~------~~~tTr~~~~gi~~~~~ 55 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITS------------------------R------KAQTTRHRIVGIHTEGA 55 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECC------------------------C------CSSCCSSCEEEEEEETT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccC------------------------C------CCCcceeeEEEEEEECC
Confidence 45678999999999999999999654221110 0 12333333334466788
Q ss_pred eEEEEEeCCCCc-ch--------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010318 160 TRFTILDAPGHK-SY--------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 230 (513)
Q Consensus 160 ~~i~liDtPGh~-~f--------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 230 (513)
.+++|+||||+. .+ ......++..+|++++|+|+.. . .+++++.+..+...+.| +|+++||+
T Consensus 56 ~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~-------~~~~~~i~~~l~~~~~P-~ilvlNK~ 126 (301)
T 1ega_A 56 YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-W-------TPDDEMVLNKLREGKAP-VILAVNKV 126 (301)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-C-------CHHHHHHHHHHHSSSSC-EEEEEEST
T ss_pred eeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-C-------CHHHHHHHHHHHhcCCC-EEEEEECc
Confidence 999999999997 32 2223455678999999999976 3 25677777777767889 88999999
Q ss_pred cCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 231 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 231 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+.. ....+. +.+..+.+.+++ .+++|+||++|.|+.++.+
T Consensus 127 D~~~---~~~~~~---~~l~~l~~~~~~-----~~~i~iSA~~g~~v~~l~~ 167 (301)
T 1ega_A 127 DNVQ---EKADLL---PHLQFLASQMNF-----LDIVPISAETGLNVDTIAA 167 (301)
T ss_dssp TTCC---CHHHHH---HHHHHHHTTSCC-----SEEEECCTTTTTTHHHHHH
T ss_pred ccCc---cHHHHH---HHHHHHHHhcCc-----CceEEEECCCCCCHHHHHH
Confidence 9942 122232 233333333443 2799999999999998644
No 44
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.76 E-value=7.4e-19 Score=171.36 Aligned_cols=149 Identities=17% Similarity=0.190 Sum_probs=105.9
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|++|+|||||+++|.+..-. .....|+|++.....+...+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~-------------------------------~~~~pg~tv~~~~~~~~~~~ 51 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY-------------------------------VANWPGVTVEKKEGVFTYKG 51 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEE-------------------------------EEECTTSCCEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCc-------------------------------ccCCCCceEEEEEEEEEECC
Confidence 45689999999999999999999421100 11226888888888888889
Q ss_pred eEEEEEeCCCCcchHHH-----H-HHhh--hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 160 TRFTILDAPGHKSYVPN-----M-ISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~-----~-~~~~--~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
..+.|+||||+.+|... + ...+ ..+|++|+|+|++... .....+..+..+++| +|+|+||+|
T Consensus 52 ~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~---------~~~~~~~~l~~~~~p-vilv~NK~D 121 (258)
T 3a1s_A 52 YTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPE---------QSLYLLLEILEMEKK-VILAMTAID 121 (258)
T ss_dssp EEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCH---------HHHHHHHHHHTTTCC-EEEEEECHH
T ss_pred eEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchh---------hHHHHHHHHHhcCCC-EEEEEECcC
Confidence 99999999999877421 1 1112 5799999999998741 344455566667999 999999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+.... .+...+..+.+.+| ++++++||++|.|+.++++
T Consensus 122 l~~~~-------~i~~~~~~l~~~lg------~~vi~~SA~~g~gi~el~~ 159 (258)
T 3a1s_A 122 EAKKT-------GMKIDRYELQKHLG------IPVVFTSSVTGEGLEELKE 159 (258)
T ss_dssp HHHHT-------TCCBCHHHHHHHHC------SCEEECCTTTCTTHHHHHH
T ss_pred CCCcc-------chHHHHHHHHHHcC------CCEEEEEeeCCcCHHHHHH
Confidence 83211 11112233334444 4799999999999998754
No 45
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.76 E-value=7e-18 Score=177.08 Aligned_cols=147 Identities=20% Similarity=0.292 Sum_probs=102.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
++|+++|++|+|||||+|+|.+....+. ....|+|.+.....+.+.+..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v------------------------------~~~~g~T~d~~~~~~~~~~~~~ 51 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV------------------------------EDEEGVTRDPVQDTVEWYGKTF 51 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------------------------------------CCSEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcee------------------------------cCCCCCccceeeEEEEECCeEE
Confidence 5799999999999999999964332211 1127889888888899999999
Q ss_pred EEEeCCCCcc---------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCC
Q 010318 163 TILDAPGHKS---------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 233 (513)
Q Consensus 163 ~liDtPGh~~---------f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 233 (513)
.|+||||.+. +...+..+++.||++|+|+|+..+.. ....+...+++..++| +++|+||+|+
T Consensus 52 ~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~-------~~d~~i~~~l~~~~~p-~ilv~NK~D~- 122 (439)
T 1mky_A 52 KLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGIT-------KEDESLADFLRKSTVD-TILVANKAEN- 122 (439)
T ss_dssp EEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCC-------HHHHHHHHHHHHHTCC-EEEEEESCCS-
T ss_pred EEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEEEEeCCCC-
Confidence 9999999764 34455667889999999999998742 3445566677777899 8999999998
Q ss_pred CCCchHHHHHHHHhhh-HhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 234 TVNWSKERYDEIESKM-TPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l-~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.+ .. ...+ ..+ ..+|+. +++++||++|.|+.++++
T Consensus 123 -~~---~~----~~~~~~~~-~~lg~~-----~~~~iSA~~g~gv~~L~~ 158 (439)
T 1mky_A 123 -LR---EF----EREVKPEL-YSLGFG-----EPIPVSAEHNINLDTMLE 158 (439)
T ss_dssp -HH---HH----HHHTHHHH-GGGSSC-----SCEECBTTTTBSHHHHHH
T ss_pred -cc---cc----HHHHHHHH-HhcCCC-----CEEEEeccCCCCHHHHHH
Confidence 21 10 1122 222 245542 579999999999999754
No 46
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.76 E-value=6.7e-19 Score=172.95 Aligned_cols=148 Identities=20% Similarity=0.185 Sum_probs=105.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
+.++|+++|++|+|||||+++|.+... ......|+|++.....+.+.+.
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~~ 50 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-------------------------------HVGNWPGVTVEKKEGIMEYREK 50 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-------------------------------EEEECTTSSCEEEEEEEEETTE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-------------------------------ccCCCCCeEEEeeEEEEEECCc
Confidence 468999999999999999999943211 0122377888888888999999
Q ss_pred EEEEEeCCCCcchHH------HHHH--hhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC-CCeEEEEEeecc
Q 010318 161 RFTILDAPGHKSYVP------NMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-VTKLLLVVNKMD 231 (513)
Q Consensus 161 ~i~liDtPGh~~f~~------~~~~--~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~-ip~~ivviNK~D 231 (513)
.+.|+||||+.+|.. .... ....+|++|+|+|++.+ .+....+..+...+ +| +++|+||+|
T Consensus 51 ~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---------~~~~~~~~~~~~~~~~p-~ilv~NK~D 120 (271)
T 3k53_A 51 EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL---------MRNLFLTLELFEMEVKN-IILVLNKFD 120 (271)
T ss_dssp EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH---------HHHHHHHHHHHHTTCCS-EEEEEECHH
T ss_pred eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc---------hhhHHHHHHHHhcCCCC-EEEEEEChh
Confidence 999999999988743 1111 12579999999999875 24555566666777 88 999999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+.... .+......+.+.+| ++++|+||++|.|+.++++
T Consensus 121 l~~~~-------~~~~~~~~l~~~lg------~~~~~~Sa~~g~gi~~l~~ 158 (271)
T 3k53_A 121 LLKKK-------GAKIDIKKMRKELG------VPVIPTNAKKGEGVEELKR 158 (271)
T ss_dssp HHHHH-------TCCCCHHHHHHHHS------SCEEECBGGGTBTHHHHHH
T ss_pred cCccc-------ccHHHHHHHHHHcC------CcEEEEEeCCCCCHHHHHH
Confidence 72110 01111222233333 4799999999999988654
No 47
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=6.2e-18 Score=156.80 Aligned_cols=154 Identities=17% Similarity=0.188 Sum_probs=104.9
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|.+|+|||||+++|+...- .. ......|.+.......+....
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 71 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHF--DH---------------------------NISPTIGASFMTKTVPCGNEL 71 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCC--CT---------------------------TCCCCSSEEEEEEEEECSSSE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCC--CC---------------------------CcCCCcceeEEEEEEEeCCEE
Confidence 4579999999999999999999953221 00 001124555555444455566
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~ 236 (513)
..+.|+||||+++|...+...++.+|++|+|+|++.... + ......+..+... ++| +++|+||+|+...
T Consensus 72 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl~~~- 143 (192)
T 2fg5_A 72 HKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDS---F---YTLKKWVKELKEHGPENIV-MAIAGNKCDLSDI- 143 (192)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGG-
T ss_pred EEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhCCCCCc-EEEEEECcccccc-
Confidence 789999999999998888888899999999999987531 1 1223334444443 677 9999999999421
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
..... +++..+++..+ ++++++||++|.|+.+++
T Consensus 144 -~~v~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 177 (192)
T 2fg5_A 144 -REVPL----KDAKEYAESIG------AIVVETSAKNAINIEELF 177 (192)
T ss_dssp -CCSCH----HHHHHHHHTTT------CEEEECBTTTTBSHHHHH
T ss_pred -cccCH----HHHHHHHHHcC------CEEEEEeCCCCcCHHHHH
Confidence 11111 22333344443 589999999999999863
No 48
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.76 E-value=4.5e-18 Score=158.03 Aligned_cols=103 Identities=18% Similarity=0.296 Sum_probs=72.3
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeeccCCCCCch
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~D~~~~~~~ 238 (513)
..+.|+||||++.|...+...++.+|++|+|+|++++.. + ......+..+. ..+.| +++|+||+|+......
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~---~~~~~~~~~i~~~~~~p-iilv~NK~D~~~~~~~ 165 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNT---L---DRAKTWVNQLKISSNYI-IILVANKIDKNKFQVD 165 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCCE-EEEEEECTTCC-CCSC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHhhCCCc-EEEEEECCCcccccCC
Confidence 789999999999999888888999999999999988632 1 12223333333 35666 9999999994211111
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. +++..++...+ ++++++||++|.|+.++++
T Consensus 166 ---~----~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 196 (208)
T 3clv_A 166 ---I----LEVQKYAQDNN------LLFIQTSAKTGTNIKNIFY 196 (208)
T ss_dssp ---H----HHHHHHHHHTT------CEEEEECTTTCTTHHHHHH
T ss_pred ---H----HHHHHHHHHcC------CcEEEEecCCCCCHHHHHH
Confidence 1 22333444433 5899999999999998654
No 49
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.75 E-value=4.4e-18 Score=157.27 Aligned_cols=153 Identities=17% Similarity=0.252 Sum_probs=104.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+++|.+|+|||||+++|+...... .....|.|...... ..+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~t~~~~~~---~~~ 67 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAF------------------------------VSKTPGKTRSINFY---LVN 67 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSC------------------------------CCSSCCCCCCEEEE---EET
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcccc------------------------------ccCCCCCccCeEEE---EEC
Confidence 456899999999999999999995432110 01113444333222 224
Q ss_pred eEEEEEeCCC----------CcchH---HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEE
Q 010318 160 TRFTILDAPG----------HKSYV---PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLV 226 (513)
Q Consensus 160 ~~i~liDtPG----------h~~f~---~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivv 226 (513)
..+.|+|||| ++.|. ....+.+..+|++++|+|+..+.. ......+..+...++| +++|
T Consensus 68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~i~v 139 (195)
T 3pqc_A 68 SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQ-------DSDLMMVEWMKSLNIP-FTIV 139 (195)
T ss_dssp TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EEEE
T ss_pred CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCC-------HHHHHHHHHHHHcCCC-EEEE
Confidence 5789999999 44443 344455556799999999987632 3455666778888999 9999
Q ss_pred EeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 227 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 227 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+||+|+... .......+++..++...+ .++++++||++|.|+.++++
T Consensus 140 ~nK~Dl~~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l~~ 186 (195)
T 3pqc_A 140 LTKMDKVKM----SERAKKLEEHRKVFSKYG-----EYTIIPTSSVTGEGISELLD 186 (195)
T ss_dssp EECGGGSCG----GGHHHHHHHHHHHHHSSC-----CSCEEECCTTTCTTHHHHHH
T ss_pred EEChhcCCh----HHHHHHHHHHHHHHhhcC-----CCceEEEecCCCCCHHHHHH
Confidence 999999432 234455556666665543 35899999999999998644
No 50
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.75 E-value=1e-17 Score=152.36 Aligned_cols=154 Identities=16% Similarity=0.175 Sum_probs=100.8
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|+...- . ......++.+.....+..+
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~ 52 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKF--D-----------------------------TQLFHTIGVEFLNKDLEVD 52 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCC--C-----------------------------C----CCSEEEEEEEEEET
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCC--C-----------------------------CCCCCceeeeEEEEEEEEC
Confidence 34578999999999999999999953211 1 0111222333333444455
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-------cCCCeEEEEEee
Q 010318 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVVNK 229 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-------~~ip~~ivviNK 229 (513)
+ ..+.|+||||+++|...+...++.+|++|+|+|++.+.. ++ .....+..+.. .++| +++|+||
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-~i~v~nK 125 (177)
T 1wms_A 53 GHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQS---FQ---NLSNWKKEFIYYADVKEPESFP-FVILGNK 125 (177)
T ss_dssp TEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTCSCTTTSC-EEEEEEC
T ss_pred CEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHccccccCCCc-EEEEEEC
Confidence 4 589999999999999988888999999999999987532 11 11222222221 4677 8999999
Q ss_pred ccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 230 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 230 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+|+.......+ ++..+++.. ..++++++||++|.|+.++++
T Consensus 126 ~Dl~~~~~~~~-------~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~ 166 (177)
T 1wms_A 126 IDISERQVSTE-------EAQAWCRDN-----GDYPYFETSAKDATNVAAAFE 166 (177)
T ss_dssp TTCSSCSSCHH-------HHHHHHHHT-----TCCCEEECCTTTCTTHHHHHH
T ss_pred CcccccccCHH-------HHHHHHHhc-----CCceEEEEeCCCCCCHHHHHH
Confidence 99852222222 222223211 135899999999999998643
No 51
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.75 E-value=6.2e-18 Score=156.66 Aligned_cols=155 Identities=13% Similarity=0.178 Sum_probs=98.9
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|+..... .. .....|.|.......+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~---------------------------~~~~~~~t~~~~~~~~--- 67 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNL--AR---------------------------TSSKPGKTQTLNFYII--- 67 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC------------------------------------------CCEEEEEE---
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCc--cc---------------------------cCCCCCceeeEEEEEE---
Confidence 346799999999999999999999532100 00 0011344444333322
Q ss_pred CeEEEEEeCCC----------CcchHHHHHHhhhh---cCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEE
Q 010318 159 TTRFTILDAPG----------HKSYVPNMISGASQ---ADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 225 (513)
Q Consensus 159 ~~~i~liDtPG----------h~~f~~~~~~~~~~---~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~iv 225 (513)
+..+.|+|||| ++.|...+...+.. +|++++|+|++.+.. .+..+.+..+...++| +++
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~i~ 139 (195)
T 1svi_A 68 NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPS-------NDDVQMYEFLKYYGIP-VIV 139 (195)
T ss_dssp TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EEE
T ss_pred CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCC-------HHHHHHHHHHHHcCCC-EEE
Confidence 34799999999 55565444444444 499999999998732 2445556677778898 999
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 226 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 226 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+||+|+... .......+++...+... ...+++++||++|.|+.++++
T Consensus 140 v~nK~Dl~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gv~~l~~ 187 (195)
T 1svi_A 140 IATKADKIPK----GKWDKHAKVVRQTLNID-----PEDELILFSSETKKGKDEAWG 187 (195)
T ss_dssp EEECGGGSCG----GGHHHHHHHHHHHHTCC-----TTSEEEECCTTTCTTHHHHHH
T ss_pred EEECcccCCh----HHHHHHHHHHHHHHccc-----CCCceEEEEccCCCCHHHHHH
Confidence 9999999432 12333334444433321 246899999999999998643
No 52
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=9.8e-18 Score=152.98 Aligned_cols=154 Identities=16% Similarity=0.197 Sum_probs=94.7
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|+...-.. ......++.+.....+..+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~ 56 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLA------------------------------GTFISTVGIDFRNKVLDVD 56 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCC------------------------------CCCCCCCSCEEEEEEEEET
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCC------------------------------CCcCCceeeEEEEEEEEEC
Confidence 3567999999999999999999995422110 0011223333333333444
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCC
Q 010318 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 233 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~ 233 (513)
+ ..+.|+||||+++|...+...+..+|++|+|+|++.+.. ++ ...+.+..+.. .++| +++++||+|+.
T Consensus 57 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 129 (180)
T 2g6b_A 57 GVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKAS---FD---NIQAWLTEIHEYAQHDVA-LMLLGNKVDSA 129 (180)
T ss_dssp TEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECCSTT
T ss_pred CEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCCc-EEEEEECcccC
Confidence 4 478999999999999888888999999999999987532 11 22333333433 4677 99999999994
Q ss_pred CCC-chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 234 TVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 234 ~~~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... ...+ +...+.+..+ ++++++||++|.|+.++++
T Consensus 130 ~~~~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 166 (180)
T 2g6b_A 130 HERVVKRE-------DGEKLAKEYG------LPFMETSAKTGLNVDLAFT 166 (180)
T ss_dssp SCCCSCHH-------HHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred cccccCHH-------HHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 321 1111 1222333333 4799999999999998644
No 53
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.75 E-value=9.4e-18 Score=154.08 Aligned_cols=153 Identities=19% Similarity=0.225 Sum_probs=103.0
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|++|+|||||+++|+..... ......++.+.....+..++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 56 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFK-------------------------------DDSNHTIGVEFGSKIINVGG 56 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCC-------------------------------TTCCCCSEEEEEEEEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCC-------------------------------CCCCCccceEEEEEEEEECC
Confidence 45799999999999999999999532211 11113344444444455555
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCC
Q 010318 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 160 --~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~ 234 (513)
..+.|+||||+++|...+...++.+|++|+|+|++.... ++ .....+..+.. .++| +++|+||+|+..
T Consensus 57 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 129 (186)
T 2bme_A 57 KYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET---YN---ALTNWLTDARMLASQNIV-IILCGNKKDLDA 129 (186)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 689999999999999988888999999999999987532 11 12223322332 4677 999999999842
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. .... .+...+.... .++++++||++|.|+.++++
T Consensus 130 ~~--~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 130 DR--EVTF----LEASRFAQEN------ELMFLETSALTGENVEEAFV 165 (186)
T ss_dssp GC--CSCH----HHHHHHHHHT------TCEEEECCTTTCTTHHHHHH
T ss_pred cc--ccCH----HHHHHHHHHc------CCEEEEecCCCCCCHHHHHH
Confidence 11 1111 1222333333 35899999999999998754
No 54
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=159.21 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=102.2
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|+....... ....|+......+..+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--------------------------------~~~~t~~~~~~~~~~~ 65 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQ--------------------------------NILPTIGFSIEKFKSS 65 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCS--------------------------------SCCCCSSEEEEEEECS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCC--------------------------------CcCCccceeEEEEEEC
Confidence 45679999999999999999999943221000 0112223334456667
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH------cCCCeEEEEEeeccC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDD 232 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~------~~ip~~ivviNK~D~ 232 (513)
+..+.|+||||+++|...+...+..+|++|+|+|+++... + ....+.+..+.. .++| +++|+||+|+
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 138 (190)
T 2h57_A 66 SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLR---M---VVAKEELDTLLNHPDIKHRRIP-ILFFANKMDL 138 (190)
T ss_dssp SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHH---H---HHHHHHHHHHHHSTTTTTSCCC-EEEEEECTTS
T ss_pred CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhccCCCe-EEEEEeCcCc
Confidence 8999999999999998888888899999999999987521 1 122233333333 3677 9999999999
Q ss_pred CCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.... . .+++.+.+. +..+. ...++++++||++|.|+.++++
T Consensus 139 ~~~~-~---~~~~~~~~~--~~~~~---~~~~~~~~~Sa~~~~gi~~l~~ 179 (190)
T 2h57_A 139 RDAV-T---SVKVSQLLC--LENIK---DKPWHICASDAIKGEGLQEGVD 179 (190)
T ss_dssp TTCC-C---HHHHHHHHT--GGGCC---SSCEEEEECBTTTTBTHHHHHH
T ss_pred ccCC-C---HHHHHHHhC--hhhcc---CCceEEEEccCCCCcCHHHHHH
Confidence 4321 1 122222221 11111 1246899999999999998644
No 55
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.75 E-value=4.2e-18 Score=152.84 Aligned_cols=150 Identities=19% Similarity=0.173 Sum_probs=96.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC-
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 159 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~- 159 (513)
+.++|+++|++|+|||||+++|+... .... . ....+ +.. ...+..++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~------------------------~---~~~~~-~~~--~~~~~~~~~ 49 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGT--FIEK------------------------Y---DPTIE-DFY--RKEIEVDSS 49 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC--CCSC------------------------C---CTTCC-EEE--EEEEEETTE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCC--Cccc------------------------C---CCCcc-eeE--EEEEEECCE
Confidence 46899999999999999999995321 1100 0 00011 111 22233333
Q ss_pred -eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-HH---cCCCeEEEEEeeccCCC
Q 010318 160 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KT---LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 160 -~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~-~~---~~ip~~ivviNK~D~~~ 234 (513)
..+.|+||||+++|...+...++.+|++++|+|+.+... + ......+..+ .. .++| +++|+||+|+..
T Consensus 50 ~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 122 (167)
T 1kao_A 50 PSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQS---F---QDIKPMRDQIIRVKRYEKVP-VILVGNKVDLES 122 (167)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHTTTSCCC-EEEEEECGGGGG
T ss_pred EEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHH---H---HHHHHHHHHHHHhcCCCCCC-EEEEEECCcccc
Confidence 569999999999999888888899999999999987521 0 0122222222 22 3678 999999999842
Q ss_pred CC-chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. ... .+...+.+..+ ++++++||++|.|+.++++
T Consensus 123 ~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 158 (167)
T 1kao_A 123 EREVSS-------SEGRALAEEWG------CPFMETSAKSKTMVDELFA 158 (167)
T ss_dssp GCCSCH-------HHHHHHHHHHT------SCEEEECTTCHHHHHHHHH
T ss_pred cccCCH-------HHHHHHHHHhC------CCEEEecCCCCcCHHHHHH
Confidence 11 111 12223333333 4799999999999998644
No 56
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.75 E-value=6.8e-19 Score=164.25 Aligned_cols=162 Identities=19% Similarity=0.141 Sum_probs=97.5
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++.++|+++|++|+|||||+++|+... .... .....|.+.......+...
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~---------------------------~~~t~~~~~~~~~~~~~~~ 75 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNE--FREN---------------------------ISATLGVDFQMKTLIVDGE 75 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCC--CC-------------------------------------CEEEEEEETTE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCC--CCcc---------------------------CCCCccceeEEEEEEECCE
Confidence 4567999999999999999999995321 1100 0011233333333333333
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~ 235 (513)
...+.|+||||+++|...+...++.+|++|+|+|++.+.. ++ .....+..+.. .++| +++|+||+|+...
T Consensus 76 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~~~ 148 (199)
T 2p5s_A 76 RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKS---FL---NIREWVDMIEDAAHETVP-IMLVGNKADIRDT 148 (199)
T ss_dssp EEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHC---CC-EEEEEECGGGHHH
T ss_pred EEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHH---HH---HHHHHHHHHHHhcCCCCC-EEEEEECcccccc
Confidence 4679999999999999998888999999999999987532 11 22333333433 3678 9999999998311
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
...+....-..+....+.+..+ ++++++||++|.|+.+++.
T Consensus 149 ~~~~~~~~v~~~~~~~~~~~~~------~~~~~~SA~~g~gv~el~~ 189 (199)
T 2p5s_A 149 AATEGQKCVPGHFGEKLAMTYG------ALFCETSAKDGSNIVEAVL 189 (199)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHT------CEEEECCTTTCTTHHHHHH
T ss_pred cccccccccCHHHHHHHHHHcC------CeEEEeeCCCCCCHHHHHH
Confidence 0000000000112223333333 4899999999999998643
No 57
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.75 E-value=9.4e-18 Score=155.82 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=103.0
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
.....++|+++|++|+|||||+++|+...-... + ...|+......+..
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~-------------------------~-------~~~t~~~~~~~~~~ 60 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSK-------------------------H-------ITATVGYNVETFEK 60 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC-----------------------------C-------CCCCSSEEEEEEEE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCccc-------------------------c-------cccccceeEEEEEe
Confidence 445779999999999999999999943211000 0 01122223344667
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-----------CCCeEEEE
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----------GVTKLLLV 226 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~-----------~ip~~ivv 226 (513)
.+..+.|+||||+++|...+...++.+|++|+|+|++++.. | ....+.+..+... ++| +|+|
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~~~~~~p-iilv 133 (199)
T 4bas_A 61 GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLR---L---CVVKSEIQAMLKHEDIRRELPGGGRVP-FLFF 133 (199)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTSHHHHSBCTTSCBCC-EEEE
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHH---H---HHHHHHHHHHHhChhhhhcccccCCCC-EEEE
Confidence 88999999999999999888888999999999999997631 1 1223333333322 788 9999
Q ss_pred EeeccCCCCCchHHHHHHHHhhhHh--hhhhccCcccCCeeEEEeecccccccccccc
Q 010318 227 VNKMDDHTVNWSKERYDEIESKMTP--FLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 227 iNK~D~~~~~~~~~~~~~i~~~l~~--~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+||+|+.... . .+++.+.+.. +.+. ..++++++||++|.|+.++++
T Consensus 134 ~NK~Dl~~~~-~---~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~g~gv~~l~~ 181 (199)
T 4bas_A 134 ANKMDAAGAK-T---AAELVEILDLTTLMGD------HPFVIFASNGLKGTGVHEGFS 181 (199)
T ss_dssp EECTTSTTCC-C---HHHHHHHHTHHHHHTT------SCEEEEECBTTTTBTHHHHHH
T ss_pred EECcCCCCCC-C---HHHHHHHhcchhhccC------CeeEEEEeeCCCccCHHHHHH
Confidence 9999995331 1 1223222221 1122 246899999999999999754
No 58
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.75 E-value=5.6e-18 Score=154.46 Aligned_cols=154 Identities=17% Similarity=0.150 Sum_probs=103.1
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|+...- ......+++.+.....+...
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTF-------------------------------SGSYITTIGVDFKIRTVEIN 54 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC----------------------------------CCTTTBSEEEEEEEEEET
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCC-------------------------------CCccCCCceeEEEEEEEEEC
Confidence 34679999999999999999999942110 01112445555555556666
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCC
Q 010318 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~ 234 (513)
+ ..+.|+||||+++|...+...+..+|++|+|+|++++.. +. .....+..+... ++| +|+|+||+|+..
T Consensus 55 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 55 GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAES---FV---NVKRWLHEINQNCDDVC-RILVGNKNDDPE 127 (181)
T ss_dssp TEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHCTTSE-EEEEEECTTCGG
T ss_pred CEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECCCCch
Confidence 6 689999999999998888888899999999999987521 11 122223333322 467 899999999843
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... ... .+...+....+ ++++++||++|.|+.++++
T Consensus 128 ~~~--~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 128 RKV--VET----EDAYKFAGQMG------IQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp GCC--SCH----HHHHHHHHHHT------CCEEECBTTTTBSHHHHHH
T ss_pred hcc--cCH----HHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 211 001 12222333333 4799999999999998754
No 59
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.75 E-value=5e-18 Score=153.18 Aligned_cols=151 Identities=17% Similarity=0.140 Sum_probs=98.6
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC-
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 159 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~- 159 (513)
..++|+++|++|+|||||+++|+...- .. .....++.+.....+..++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 50 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKF--NP-----------------------------SFITTIGIDFKIKTVDINGK 50 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCC--CC------------------------------------CCEEEEEEESSSC
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCC--CC-----------------------------CCCCccceeEEEEEEEECCE
Confidence 358999999999999999999953211 10 0112223333333444443
Q ss_pred -eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCC
Q 010318 160 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 -~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~ 235 (513)
..+.|+||||+++|...+...++.+|++|+|+|++.... + ......+..+... ++| +++|+||+|+...
T Consensus 51 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 123 (170)
T 1g16_A 51 KVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERT---F---TNIKQWFKTVNEHANDEAQ-LLLVGNKSDMETR 123 (170)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCTTC
T ss_pred EEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECccCCcC
Confidence 578999999999998877788899999999999987531 1 1223334334332 677 8999999998432
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
....+ +...+.+..+ ++++++||++|.|+.++++
T Consensus 124 ~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~ 157 (170)
T 1g16_A 124 VVTAD-------QGEALAKELG------IPFIESSAKNDDNVNEIFF 157 (170)
T ss_dssp CSCHH-------HHHHHHHHHT------CCEEECBTTTTBSHHHHHH
T ss_pred ccCHH-------HHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 22222 2223333443 4799999999999998644
No 60
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.75 E-value=8e-18 Score=152.09 Aligned_cols=152 Identities=17% Similarity=0.203 Sum_probs=101.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
++.++|+++|++|+|||||+++|... .... ...|+......+.+.+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 50 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG--EVVT--------------------------------TIPTIGFNVETVTYKN 50 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS--SCCC--------------------------------CCCCSSEEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC--CCCC--------------------------------cCCcCccceEEEEECC
Confidence 45689999999999999999999432 1100 1112222334566678
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 235 (513)
..+.|+||||+++|...+...++.+|++|+|+|++.... |. ...+.+..+.. .++| +++|+||+|+...
T Consensus 51 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 123 (171)
T 1upt_A 51 LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDR---IG---ISKSELVAMLEEEELRKAI-LVVFANKQDMEQA 123 (171)
T ss_dssp EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTT---HH---HHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHhchhhCCCE-EEEEEECCCCcCC
Confidence 999999999999998888888899999999999987621 11 22222322222 4677 9999999999432
Q ss_pred CchHHHHHHHHhhhHh-hhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTP-FLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~-~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. . ..++...+.. .++. ..++++++||++|.|+.++++
T Consensus 124 ~-~---~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi~~l~~ 161 (171)
T 1upt_A 124 M-T---SSEMANSLGLPALKD------RKWQIFKTSATKGTGLDEAME 161 (171)
T ss_dssp C-C---HHHHHHHHTGGGCTT------SCEEEEECCTTTCTTHHHHHH
T ss_pred C-C---HHHHHHHhCchhccC------CceEEEECcCCCCcCHHHHHH
Confidence 1 1 1222222211 1111 246899999999999998644
No 61
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.75 E-value=6.8e-18 Score=156.37 Aligned_cols=154 Identities=21% Similarity=0.195 Sum_probs=105.2
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
....++|+++|++|+|||||+++|+...-. ......++.+.....+..+
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 61 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYT-------------------------------ESYISTIGVDFKIRTIELD 61 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCC-------------------------------SCCCCCSSEEEEEEEEEET
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCC-------------------------------CCCCCcccceEEEEEEEEC
Confidence 346789999999999999999999532111 1112444445555555555
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCC
Q 010318 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 233 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~ 233 (513)
+ ..+.|+||||++.|...+...++.+|++|+|+|+++... ++ .....+..+... ++| +++|+||+|+.
T Consensus 62 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~ 134 (196)
T 3tkl_A 62 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---FN---NVKQWLQEIDRYASENVN-KLLVGNKCDLT 134 (196)
T ss_dssp TEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECTTCT
T ss_pred CEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCC-EEEEEECcccc
Confidence 5 679999999999998888888999999999999987531 11 223333334433 677 89999999984
Q ss_pred CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... .... .+...+...++ ++++++||++|.|+.++++
T Consensus 135 ~~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 135 TKK--VVDY----TTAKEFADSLG------IPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp TTC--CSCH----HHHHHHHHHTT------CCEEEECTTTCTTHHHHHH
T ss_pred ccc--ccCH----HHHHHHHHHcC------CcEEEEeCCCCCCHHHHHH
Confidence 321 1111 11222333333 4799999999999999754
No 62
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.74 E-value=3.9e-18 Score=154.24 Aligned_cols=148 Identities=24% Similarity=0.271 Sum_probs=96.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
+..+|+++|++|+|||||+++|...... .....|+|++.....+.+.+.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~~ 50 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVY-------------------------------IGNWPGVTVEKKEGEFEYNGE 50 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSS-------------------------------CC-----CCCCCEEEEEETTE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCee-------------------------------ccCCCCcceeeeEEEEEECCc
Confidence 3578999999999999999999432110 011144555555555667788
Q ss_pred EEEEEeCCCCcchH------HHHHHhh--hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 161 RFTILDAPGHKSYV------PNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 161 ~i~liDtPGh~~f~------~~~~~~~--~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
.+.++||||+.+|. ......+ ..+|++++|+|+... .+....+..+...++| +|+|.||+|+
T Consensus 51 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---------~~~~~~~~~~~~~~~p-~ilv~nK~Dl 120 (165)
T 2wji_A 51 KFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------ERNLYLTLQLMEMGAN-LLLALNKMDL 120 (165)
T ss_dssp EEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH---------HHHHHHHHHHHHTTCC-EEEEEECHHH
T ss_pred EEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch---------hHhHHHHHHHHhcCCC-EEEEEEchHh
Confidence 99999999998873 1112222 379999999999762 1333444555567888 9999999998
Q ss_pred CCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.... .+..+...+.+.++ ++++++||++|.|+.++++
T Consensus 121 ~~~~-------~~~~~~~~~~~~~~------~~~~~~SA~~~~~v~~l~~ 157 (165)
T 2wji_A 121 AKSL-------GIEIDVDKLEKILG------VKVVPLSAAKKMGIEELKK 157 (165)
T ss_dssp HHHT-------TCCCCHHHHHHHHT------SCEEECBGGGTBSHHHHHH
T ss_pred cccc-------ChhhHHHHHHHHhC------CCEEEEEcCCCCCHHHHHH
Confidence 3110 00011222333333 4799999999999998643
No 63
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.74 E-value=3e-18 Score=156.01 Aligned_cols=156 Identities=17% Similarity=0.175 Sum_probs=102.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++++|||||+++|+..... .. .....|.+.......+...
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~---------------------------~~~t~~~~~~~~~~~~~~~ 62 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFM--AD---------------------------CPHTIGVEFGTRIIEVSGQ 62 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCC--SS---------------------------CTTSCCCCEEEEEEEETTE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCC--CC---------------------------CCCccceEEEEEEEEECCe
Confidence 345799999999999999999999543211 00 0011233333333333333
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~ 235 (513)
...+.|+||||+++|...+...++.+|++|+|+|++.+.. + ......+..+.. .++| +++++||+|+...
T Consensus 63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 135 (179)
T 1z0f_A 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST---Y---NHLSSWLTDARNLTNPNTV-IILIGNKADLEAQ 135 (179)
T ss_dssp EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECcccccc
Confidence 4689999999999999888888999999999999987632 1 122233333333 4677 9999999998421
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
..... +++..+++..+ ++++++||++|.|+.++++
T Consensus 136 --~~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 136 --RDVTY----EEAKQFAEENG------LLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp --CCSCH----HHHHHHHHHTT------CEEEECCTTTCTTHHHHHH
T ss_pred --cccCH----HHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 11111 22333344433 5899999999999998643
No 64
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.74 E-value=9.8e-18 Score=153.12 Aligned_cols=155 Identities=19% Similarity=0.201 Sum_probs=100.6
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|+...- ... .....|.+.......+...
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~ 59 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQF--VEF---------------------------QESTIGAAFFSQTLAVNDA 59 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCC--TTT---------------------------SCCCSCCSEEEEEEEETTE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCC--CCc---------------------------CCCCceeEEEEEEEEECCE
Confidence 35678999999999999999999953211 000 0011222222222223223
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~ 235 (513)
...+.|+||||+++|...+...++.+|++|+|+|+++... + ....+.+..+... ++| +++|+||+|+...
T Consensus 60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQAS---F---ERAKKWVQELQAQGNPNMV-MALAGNKSDLLDA 132 (181)
T ss_dssp EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECTTCTTT
T ss_pred EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCccccc
Confidence 4689999999999998888888899999999999987521 1 1233444444443 566 8999999999432
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
. +... +++..+++..+ ++++++||++|.|+.+++
T Consensus 133 ~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 133 R--KVTA----EDAQTYAQENG------LFFMETSAKTATNVKEIF 166 (181)
T ss_dssp C--CSCH----HHHHHHHHHTT------CEEEECCSSSCTTHHHHH
T ss_pred c--cCCH----HHHHHHHHHcC------CEEEEEECCCCCCHHHHH
Confidence 1 1111 22233344433 479999999999999863
No 65
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.74 E-value=3.8e-18 Score=156.87 Aligned_cols=151 Identities=17% Similarity=0.151 Sum_probs=96.0
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|++|+|||||+++|+...- ... ..+.+.+.....+..++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~------------------------------~~~t~~~~~~~~~~~~~ 49 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHF--VDE------------------------------YDPTIEDSYRKQVVIDG 49 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSC--CCC------------------------------CCTTCCEEEEEEEEETT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCC--CCC------------------------------CCCCchheEEEEEEECC
Confidence 3568999999999999999999953221 100 01111122222333444
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCC
Q 010318 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 233 (513)
Q Consensus 160 --~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~ 233 (513)
..+.|+||||+++|...+...++.+|++++|+|++.... ++ .....+..+.. .++| +++|+||+|+.
T Consensus 50 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~ 122 (189)
T 4dsu_A 50 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS---FE---DIHHYREQIKRVKDSEDVP-MVLVGNKCDLP 122 (189)
T ss_dssp EEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHTTCSCCC-EEEEEECTTSS
T ss_pred cEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEECccCc
Confidence 457889999999998888888899999999999987521 11 12222222322 3678 99999999995
Q ss_pred CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
......+... .+....+ ++++++||++|.|+.++++
T Consensus 123 ~~~~~~~~~~-------~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 158 (189)
T 4dsu_A 123 SRTVDTKQAQ-------DLARSYG------IPFIETSAKTRQGVDDAFY 158 (189)
T ss_dssp SCSSCHHHHH-------HHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred ccccCHHHHH-------HHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 4332332222 2233333 4799999999999999755
No 66
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.74 E-value=1.4e-17 Score=149.95 Aligned_cols=154 Identities=16% Similarity=0.224 Sum_probs=101.3
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|++|+|||||+++|+... .... .....|.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 54 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQ--FHEF---------------------------QESTIGAAFLTQTVCLDDTT 54 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSC--CCTT---------------------------CCCCSSEEEEEEEEEETTEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCC--CCCC---------------------------CCCccceEEEEEEEEECCEE
Confidence 456899999999999999999995321 1100 01113444444334444446
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~ 236 (513)
..+.|+||||+++|...+...++.+|++|+|+|++.... + ......+..+... ++| ++++.||+|+....
T Consensus 55 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-iilv~nK~Dl~~~~ 127 (170)
T 1r2q_A 55 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEES---F---ARAKNWVKELQRQASPNIV-IALSGNKADLANKR 127 (170)
T ss_dssp EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGGC
T ss_pred EEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECccCcccc
Confidence 789999999999998888888899999999999987521 1 1223333334333 566 88889999984211
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.... ++...+.... .++++++||++|.|+.+++
T Consensus 128 --~~~~----~~~~~~~~~~------~~~~~~~Sa~~g~gi~~l~ 160 (170)
T 1r2q_A 128 --AVDF----QEAQSYADDN------SLLFMETSAKTSMNVNEIF 160 (170)
T ss_dssp --CSCH----HHHHHHHHHT------TCEEEECCTTTCTTHHHHH
T ss_pred --ccCH----HHHHHHHHHc------CCeEEEEeCCCCCCHHHHH
Confidence 1111 1222233333 3589999999999999853
No 67
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=155.48 Aligned_cols=155 Identities=20% Similarity=0.164 Sum_probs=101.0
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
....++|+++|++|+|||||+++|+...-. ......++.+.....+..+
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-------------------------------~~~~~t~~~~~~~~~~~~~ 71 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFC-------------------------------EACKSTVGVDFKIKTVELR 71 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC---------------------------------------CCTTEEEEEEEEEET
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCC-------------------------------cCCCCccceeEEEEEEEEC
Confidence 456789999999999999999999432110 0011222333333344444
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCC
Q 010318 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 233 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~ 233 (513)
+ ..+.|+||||+++|...+...++.+|++|+|+|++++.. ++ .....+..+... ++| +++|+||+|+.
T Consensus 72 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilV~NK~Dl~ 144 (192)
T 2il1_A 72 GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKET---FD---DLPKWMKMIDKYASEDAE-LLLVGNKLDCE 144 (192)
T ss_dssp TEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECGGGG
T ss_pred CeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECcccc
Confidence 4 579999999999999988888999999999999987532 11 223333444443 577 99999999984
Q ss_pred CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... +... +++..+.+.+. .++++++||++|.|+.++++
T Consensus 145 ~~~--~v~~----~~~~~~~~~~~-----~~~~~~~SA~~g~gi~~l~~ 182 (192)
T 2il1_A 145 TDR--EITR----QQGEKFAQQIT-----GMRFCEASAKDNFNVDEIFL 182 (192)
T ss_dssp GGC--CSCH----HHHHHHHHTST-----TCEEEECBTTTTBSHHHHHH
T ss_pred ccc--ccCH----HHHHHHHHhcC-----CCeEEEEeCCCCCCHHHHHH
Confidence 211 1011 11222333221 35899999999999998644
No 68
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.74 E-value=3.5e-18 Score=179.23 Aligned_cols=147 Identities=22% Similarity=0.293 Sum_probs=99.6
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeE
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 161 (513)
.++|+++|++|+|||||+|+|.+..-.+. ....|+|.+.....+.+.+..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v------------------------------~~~~g~T~d~~~~~~~~~~~~ 52 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIV------------------------------EDTPGVTRDRIYSSAEWLNYD 52 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------------------------------------CEEEECTTCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceee------------------------------cCCCCCccceEEEEEEECCce
Confidence 36899999999999999999954322111 122788888888888888999
Q ss_pred EEEEeCCCCc--------chHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCC
Q 010318 162 FTILDAPGHK--------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 233 (513)
Q Consensus 162 i~liDtPGh~--------~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 233 (513)
+.|+||||+. .|...+..++..||++|+|+|+..|.. ....+...+++..+.| +++|+||+|+.
T Consensus 53 ~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~-------~~d~~~~~~l~~~~~p-vilv~NK~D~~ 124 (436)
T 2hjg_A 53 FNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT-------AADEEVAKILYRTKKP-VVLAVNKLDNT 124 (436)
T ss_dssp CEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSC-------HHHHHHHHHHTTCCSC-EEEEEECCCC-
T ss_pred EEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEEECccCc
Confidence 9999999986 566667778899999999999999843 3556666777777888 99999999983
Q ss_pred CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... ..+..+. .+|+. +++++||++|.|+.++++
T Consensus 125 ~~~----------~~~~~~~-~lg~~-----~~~~iSA~~g~gv~~L~~ 157 (436)
T 2hjg_A 125 EMR----------ANIYDFY-SLGFG-----EPYPISGTHGLGLGDLLD 157 (436)
T ss_dssp --------------CCCSSG-GGSSC-----CCEECBTTTTBTHHHHHH
T ss_pred cch----------hhHHHHH-HcCCC-----CeEEEeCcCCCChHHHHH
Confidence 210 1222222 34442 689999999999998643
No 69
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.74 E-value=8.2e-18 Score=155.35 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=104.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
....++|+++|++|+|||||+++|+...-. .. .....|.+.......+...
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~---------------------------~~~t~~~~~~~~~~~~~~~ 69 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFT--PA---------------------------FVSTVGIDFKVKTVYRHDK 69 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCC--CS---------------------------CCCCCCCEEEEEEEEETTE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCC--CC---------------------------cCCceeEEEEEEEEEECCe
Confidence 345689999999999999999999532210 00 0111344444433334334
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~ 235 (513)
...+.|+||||+++|...+...++.+|++|+|+|++.... + ....+.+..+... ++| +++|+||+|+...
T Consensus 70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 142 (189)
T 2gf9_A 70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQES---F---AAVQDWATQIKTYSWDNAQ-VILVGNKCDLEDE 142 (189)
T ss_dssp EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECcccccc
Confidence 5689999999999998888888899999999999987531 1 1333444445543 677 9999999998421
Q ss_pred C-chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 N-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. ... +++..+.+.++ ++++++||++|.|+.++++
T Consensus 143 ~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 143 RVVPA-------EDGRRLADDLG------FEFFEASAKENINVKQVFE 177 (189)
T ss_dssp CCSCH-------HHHHHHHHHHT------CEEEECBTTTTBSHHHHHH
T ss_pred cCCCH-------HHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 1 111 22233344443 4799999999999998654
No 70
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.74 E-value=7.4e-18 Score=155.73 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=102.8
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++.++|+++|++|+|||||+++|+...- ... ...|+......+...
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~-------------------------------~~~t~~~~~~~~~~~ 65 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQF--NED-------------------------------MIPTVGFNMRKITKG 65 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCC--CCS-------------------------------CCCCCSEEEEEEEET
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCC--CCc-------------------------------cCCCCceeEEEEEeC
Confidence 45679999999999999999999953211 100 111222223446678
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~ 234 (513)
+..+.|+||||+++|...+...++.+|++|+|+|++.... ++ ...+.+..+.. .++| +++|+||+|+..
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~ 138 (188)
T 1zd9_A 66 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEK---IE---ASKNELHNLLDKPQLQGIP-VLVLGNKRDLPG 138 (188)
T ss_dssp TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGG---HH---HHHHHHHHHHTCGGGTTCC-EEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHH---HH---HHHHHHHHHHhCcccCCCC-EEEEEECCCCcc
Confidence 8999999999999998888888899999999999987421 11 22233333322 4678 999999999943
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.. . .+++.+.+.... +. ...++++++||++|.|+.+++
T Consensus 139 ~~-~---~~~~~~~~~~~~----~~-~~~~~~~~~SA~~g~gv~~l~ 176 (188)
T 1zd9_A 139 AL-D---EKELIEKMNLSA----IQ-DREICCYSISCKEKDNIDITL 176 (188)
T ss_dssp CC-C---HHHHHHHTTGGG----CC-SSCEEEEECCTTTCTTHHHHH
T ss_pred CC-C---HHHHHHHhChhh----hc-cCCeeEEEEECCCCCCHHHHH
Confidence 21 1 122323222111 11 125689999999999999853
No 71
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=7.3e-18 Score=155.45 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=98.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++.++|+++|++|+|||||+++|....- .. ...|+......+..+
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~--~~--------------------------------~~~t~~~~~~~~~~~ 58 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEV--VH--------------------------------TSPTIGSNVEEIVIN 58 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSC--EE--------------------------------EECCSCSSCEEEEET
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCC--Cc--------------------------------CcCCCccceEEEEEC
Confidence 35679999999999999999999942110 00 011222233445667
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~ 234 (513)
+..+.|+||||+++|...+...++.+|++|+|+|++++.. |+ ...+.+..+.. .++| +++|+||+|+..
T Consensus 59 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~ 131 (187)
T 1zj6_A 59 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER---IS---VTREELYKMLAHEDLRKAG-LLIFANKQDVKE 131 (187)
T ss_dssp TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTT---HH---HHHHHHHHHHTSGGGTTCE-EEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHhchhhCCCe-EEEEEECCCCcC
Confidence 8999999999999998877778899999999999987621 11 23333333332 4677 999999999943
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. . .+++.+.+. ...+. ...++++++||++|.|+.++++
T Consensus 132 ~~-~---~~~i~~~~~----~~~~~-~~~~~~~~~Sa~~g~gi~~l~~ 170 (187)
T 1zj6_A 132 CM-T---VAEISQFLK----LTSIK-DHQWHIQACCALTGEGLCQGLE 170 (187)
T ss_dssp CC-C---HHHHHHHHT----GGGCC-SSCEEEEECBTTTTBTHHHHHH
T ss_pred CC-C---HHHHHHHhC----hhhhc-CCCcEEEEccCCCCcCHHHHHH
Confidence 21 1 122222221 11111 1246899999999999998643
No 72
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.74 E-value=8.6e-18 Score=155.66 Aligned_cols=156 Identities=18% Similarity=0.156 Sum_probs=102.9
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|+....... .....|.+.......+...
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~ 72 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHD-----------------------------SRTTIGVEFSTRTVMLGTA 72 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSS-----------------------------CCCCSSEEEEEEEEEETTE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------CCCccceeEEEEEEEECCE
Confidence 45679999999999999999999954321100 0011244433333333334
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~ 235 (513)
...+.|+||||+++|...+...++.+|++|+|+|++.... + ......+..+... ++| +++|+||+|+...
T Consensus 73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s---~---~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~~ 145 (193)
T 2oil_A 73 AVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT---Y---AVVERWLKELYDHAEATIV-VMLVGNKSDLSQA 145 (193)
T ss_dssp EEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHTTSCTTCE-EEEEEECGGGGGG
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEECCCcccc
Confidence 5789999999999998888888899999999999987521 1 1223333334332 567 8999999999432
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. .... .+...++... .++++++||++|.|+.++++
T Consensus 146 ~--~~~~----~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 180 (193)
T 2oil_A 146 R--EVPT----EEARMFAENN------GLLFLETSALDSTNVELAFE 180 (193)
T ss_dssp C--CSCH----HHHHHHHHHT------TCEEEEECTTTCTTHHHHHH
T ss_pred c--ccCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 1 1111 1222333333 35799999999999998654
No 73
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=9e-18 Score=157.82 Aligned_cols=152 Identities=16% Similarity=0.142 Sum_probs=101.6
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+++|++++|||||+++|+...- . ......++.+.....+..++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~ 66 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKF--N-----------------------------PSFITTIGIDFKIKTVDING 66 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCC--C-----------------------------CSSSCCCSCCEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC--C-----------------------------cccCCcccceEEEEEEEECC
Confidence 4568999999999999999999953211 0 01112333333344455555
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCC
Q 010318 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 234 (513)
Q Consensus 160 --~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~ 234 (513)
..+.|+||||+++|...+...+..+|++|+|+|++.... ++ .....+..+... ++| +++|+||+|+..
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 139 (213)
T 3cph_A 67 KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERT---FT---NIKQWFKTVNEHANDEAQ-LLLVGNKSDMET 139 (213)
T ss_dssp EEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHTTTCSE-EEEEEECTTCSS
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCC-EEEEEECCCCcc
Confidence 679999999999998877788899999999999987531 11 223344444433 577 899999999832
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.....+. ...+....+ ++++++||++|.|+.++++
T Consensus 140 ~~~~~~~-------~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 174 (213)
T 3cph_A 140 RVVTADQ-------GEALAKELG------IPFIESSAKNDDNVNEIFF 174 (213)
T ss_dssp CCSCHHH-------HHHHHHHHT------CCEEECBTTTTBSSHHHHH
T ss_pred cccCHHH-------HHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 2222222 222333333 4799999999999999755
No 74
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.74 E-value=6.5e-18 Score=154.89 Aligned_cols=152 Identities=16% Similarity=0.161 Sum_probs=79.0
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+++|++|+|||||+++|....- . ......++.+.....+..++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~ 54 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAF--N-----------------------------STFISTIGIDFKIRTIELDG 54 (183)
T ss_dssp SEEEEEEEECCCCC-----------------------------------------------CHHHHHCEEEEEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC--C-----------------------------CCCCCcccceeEEEEEEECC
Confidence 4568999999999999999999853211 0 01112333444444455555
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCC
Q 010318 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 234 (513)
Q Consensus 160 --~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~ 234 (513)
..+.|+||||+++|...+...++.+|++|+|+|+++... |+ ...+.+..+... ++| +++|+||+|+..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 127 (183)
T 2fu5_C 55 KRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS---FD---NIRNWIRNIEEHASADVE-KMILGNKCDVND 127 (183)
T ss_dssp EEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHSCTTCE-EEEEEEC--CCS
T ss_pred EEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCC-EEEEEECccCCc
Confidence 789999999999998877778899999999999987521 11 233334444443 577 899999999943
Q ss_pred CC-chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. .+.+ ++..+.+..+ ++++++||++|.|+.+++.
T Consensus 128 ~~~v~~~-------~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 163 (183)
T 2fu5_C 128 KRQVSKE-------RGEKLALDYG------IKFMETSAKANINVENAFF 163 (183)
T ss_dssp CCCSCHH-------HHHHHHHHHT------CEEEECCC---CCHHHHHH
T ss_pred cCcCCHH-------HHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 21 1111 2223334443 4799999999999998754
No 75
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=1.9e-17 Score=149.12 Aligned_cols=156 Identities=19% Similarity=0.237 Sum_probs=99.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
+.++|+++|++|+|||||+++|+...- ... .....|.+.......+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 52 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDF--AEN---------------------------KEPTIGAAFLTQRVTINEHTV 52 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--CTT---------------------------CCCCSSEEEEEEEEEETTEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCC---------------------------CCCccceeEEEEEEEECCEEE
Confidence 468999999999999999999953221 100 001133333333333333345
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCCc
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVNW 237 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~~ 237 (513)
.+.|+||||+++|...+...++.+|++|+|+|+++... + ......+..+.. .++| +++++||+|+...+.
T Consensus 53 ~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~ 125 (170)
T 1ek0_A 53 KFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQS---F---IKARHWVKELHEQASKDII-IALVGNKIDXLQEGG 125 (170)
T ss_dssp EEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECGGGGGSSC
T ss_pred EEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHH---H---HHHHHHHHHHHHhcCCCCc-EEEEEECCCcccccc
Confidence 89999999999998888888999999999999987521 1 122222323332 2677 899999999843211
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
..... .+....+.+..+ ++++++||++|.|+.+++
T Consensus 126 ~~~v~---~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 126 ERKVA---REEGEKLAEEKG------LLFFETSAKTGENVNDVF 160 (170)
T ss_dssp CCCSC---HHHHHHHHHHHT------CEEEECCTTTCTTHHHHH
T ss_pred ccCCC---HHHHHHHHHHcC------CEEEEEeCCCCCCHHHHH
Confidence 00000 111222233333 479999999999999853
No 76
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.74 E-value=2.6e-17 Score=147.33 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=96.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE-- 158 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-- 158 (513)
+..+|+++|++|+|||||+++|+.... ... . ...+.......+...
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~--~~~------------------------~------~~~~~~~~~~~~~~~~~ 49 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHF--VDE------------------------C------DPTIEDSYRKQVVIDGE 49 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSC--CSC------------------------C------CTTCCEEEEEEEEETTE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcC--ccc------------------------c------CCccceEEEEEEEECCE
Confidence 357899999999999999999953211 100 0 000001111223333
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc----CCCeEEEEEeeccCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~----~ip~~ivviNK~D~~~ 234 (513)
...+.|+||||+.+|...+...+..+|++++|+|+++... + ....+.+..+... ++| +++++||+|+..
T Consensus 50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~i~~~~~~~~~p-~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKS---F---EDIHQYREQIKRVKDSDDVP-MVLVGNKSDLAA 122 (166)
T ss_dssp EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTCSCCC-EEEEEECTTCSC
T ss_pred EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCc-EEEEEEchhhhh
Confidence 3568999999999998888888899999999999986421 1 1223333333332 678 999999999854
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
...... ++..+.+..+ ++++++||++|.|+.++++
T Consensus 123 ~~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 157 (166)
T 2ce2_X 123 RTVESR-------QAQDLARSYG------IPYIETSAKTRQGVEDAFY 157 (166)
T ss_dssp CCSCHH-------HHHHHHHHHT------CCEEEECTTTCTTHHHHHH
T ss_pred cccCHH-------HHHHHHHHcC------CeEEEecCCCCCCHHHHHH
Confidence 222222 2223333333 4799999999999998643
No 77
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.74 E-value=1.2e-17 Score=151.95 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=100.8
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|+...-. ......++.+.....+..+
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 59 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFD-------------------------------NTYQATIGIDFLSKTMYLE 59 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCC-------------------------------SSCCCCCSEEEEEEEEEET
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCC-------------------------------CCCCCceeeEEEEEEEEEC
Confidence 345689999999999999999999532211 0111333334434444454
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCC
Q 010318 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 233 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~ 233 (513)
+ ..+.|+||||+++|...+...+..+|++|+|+|++.... ++ .....+..+.. .++| +++|+||+|+.
T Consensus 60 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~ 132 (179)
T 2y8e_A 60 DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNS---FH---QTSKWIDDVRTERGSDVI-IMLVGNKTDLS 132 (179)
T ss_dssp TEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTTSSE-EEEEEECGGGG
T ss_pred CeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECCccc
Confidence 4 579999999999998888888899999999999987421 11 22333333332 3677 89999999984
Q ss_pred CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
... +... .+...+++..+ ++++++||++|.|+.+++
T Consensus 133 ~~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~ 168 (179)
T 2y8e_A 133 DKR--QVST----EEGERKAKELN------VMFIETSAKAGYNVKQLF 168 (179)
T ss_dssp GGC--CSCH----HHHHHHHHHHT------CEEEEEBTTTTBSHHHHH
T ss_pred ccC--cCCH----HHHHHHHHHcC------CeEEEEeCCCCCCHHHHH
Confidence 221 1111 11222333333 589999999999999853
No 78
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.74 E-value=4.9e-18 Score=157.16 Aligned_cols=160 Identities=16% Similarity=0.134 Sum_probs=100.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeE-----
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRA----- 153 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~----- 153 (513)
..+.++|+++|++|+|||||++.|.... .... .+ .... .......|+.....
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~---~~~~----------~~-------~~~~---~~~~~~~t~~~~~~~~~~~ 67 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKV---PEGR----------KG-------EMVS---LATEDERTLFFDFLPLDIG 67 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTS---CGGG----------BC-------CCEE---EECSSCEEEEEEECCSSCC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhc---cccc----------cc-------cccc---cccccccceeeeecccccc
Confidence 3567999999999999999997662211 1000 00 0000 00001122222211
Q ss_pred EEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHH----HHH-----cCCCeEE
Q 010318 154 HFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVML----AKT-----LGVTKLL 224 (513)
Q Consensus 154 ~~~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~----~~~-----~~ip~~i 224 (513)
.+......+.|+||||+++|...+...++.+|++|+|+|++.+.. .+..+.+.. +.. .++| ++
T Consensus 68 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~-------~~~~~s~~~l~~~l~~~~~~~~~~p-ii 139 (198)
T 3t1o_A 68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRL-------RANAESMRNMRENLAEYGLTLDDVP-IV 139 (198)
T ss_dssp CSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGH-------HHHHHHHHHHHHHHHHTTCCTTSSC-EE
T ss_pred cccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchh-------hHhHHHHHHHHHHHHhhccccCCCC-EE
Confidence 122345679999999999999988889999999999999996532 123333322 222 3678 99
Q ss_pred EEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 225 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 225 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+|+||+|+... ... +++..+++..++ .+++++||++|.|+.++++
T Consensus 140 lv~NK~Dl~~~-~~~-------~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~ 184 (198)
T 3t1o_A 140 IQVNKRDLPDA-LPV-------EMVRAVVDPEGK-----FPVLEAVATEGKGVFETLK 184 (198)
T ss_dssp EEEECTTSTTC-CCH-------HHHHHHHCTTCC-----SCEEECBGGGTBTHHHHHH
T ss_pred EEEEchhcccc-cCH-------HHHHHHHHhcCC-----ceEEEEecCCCcCHHHHHH
Confidence 99999999432 121 233344444433 2799999999999998754
No 79
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.74 E-value=3e-17 Score=151.33 Aligned_cols=152 Identities=13% Similarity=0.129 Sum_probs=100.7
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEee-eEEEEeC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG-RAHFETE 158 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~-~~~~~~~ 158 (513)
...++|+++|++|+|||||+++|+... ... .....+..+.. ...+...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 57 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGK--FNS-----------------------------KFITTVGIDFREKRVVYRA 57 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC--CCC-----------------------------SCCCCCSEEEEEEEEEECT
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCC--CCc-----------------------------CcccccceeeeeEEEEEec
Confidence 457899999999999999999995321 110 00011112221 1223333
Q ss_pred -----------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeE
Q 010318 159 -----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKL 223 (513)
Q Consensus 159 -----------~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ 223 (513)
...+.|+||||+++|...+...++.+|++|+|+|++.+.. + ......+..+.. .++| +
T Consensus 58 ~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-i 130 (195)
T 3bc1_A 58 NGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQS---F---LNVRNWISQLQMHAYSENPD-I 130 (195)
T ss_dssp TSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSSSSSCC-E
T ss_pred CCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCCC-E
Confidence 4589999999999999999999999999999999987532 1 122333443433 4677 9
Q ss_pred EEEEeeccCCCCC-chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 224 LLVVNKMDDHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 224 ivviNK~D~~~~~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
++|+||+|+.... ... +++..+....+ ++++++||++|.|+.++++
T Consensus 131 ilv~nK~Dl~~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 177 (195)
T 3bc1_A 131 VLCGNKSDLEDQRAVKE-------EEARELAEKYG------IPYFETSAANGTNISHAIE 177 (195)
T ss_dssp EEEEECTTCGGGCCSCH-------HHHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred EEEEECcccccccccCH-------HHHHHHHHHcC------CCEEEEECCCCCCHHHHHH
Confidence 9999999984311 111 22233334443 4799999999999998754
No 80
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=9.1e-18 Score=155.27 Aligned_cols=155 Identities=17% Similarity=0.163 Sum_probs=102.6
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++++|||||+++|+...- ... .....|.+.......+...
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~---------------------------~~~t~~~~~~~~~~~~~~~ 62 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTF--DPE---------------------------LAATIGVDFKVKTISVDGN 62 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCC--CTT---------------------------CCCCCSEEEEEEEEEETTE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCC--Ccc---------------------------CCCccceEEEEEEEEECCe
Confidence 34678999999999999999999953221 100 0111344444443444444
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~ 234 (513)
...+.|+||||+++|...+...++.+|++|+|+|++.... + ......+..+.. .++| +++|+||+|+..
T Consensus 63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 63 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDT---F---VKLDNWLNELETYCTRNDIV-NMLVGNKIDKEN 135 (195)
T ss_dssp EEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHTTCCSCSCCE-EEEEEECTTSSS
T ss_pred EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCcCCCc-EEEEEECCcCcc
Confidence 5789999999999998888888899999999999987531 1 122233333333 2566 899999999943
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
...... +...+++..+ ++++++||++|.|+.++++
T Consensus 136 ~~~~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 170 (195)
T 1x3s_A 136 REVDRN-------EGLKFARKHS------MLFIEASAKTCDGVQCAFE 170 (195)
T ss_dssp CCSCHH-------HHHHHHHHTT------CEEEECCTTTCTTHHHHHH
T ss_pred cccCHH-------HHHHHHHHcC------CEEEEecCCCCCCHHHHHH
Confidence 222221 2223333333 5799999999999998654
No 81
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.73 E-value=3.7e-17 Score=146.74 Aligned_cols=150 Identities=18% Similarity=0.179 Sum_probs=98.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
++|+++|++|+|||||+++|+...- .. ...|+......+...+..+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~--~~--------------------------------~~~t~~~~~~~~~~~~~~~ 46 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEI--VT--------------------------------TIPTIGFNVETVEYKNISF 46 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCS--SC--------------------------------CCCCSSCCEEEEECSSCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCc--Cc--------------------------------ccCcCceeEEEEEECCEEE
Confidence 4799999999999999999953221 00 0112222334456678999
Q ss_pred EEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCCch
Q 010318 163 TILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 163 ~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~~~ 238 (513)
.|+||||+++|...+...++.+|++|+|+|+++... |+ ...+.+..+.. .++| +++|+||+|+.... .
T Consensus 47 ~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~-~ 118 (164)
T 1r8s_A 47 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---VN---EAREELMRMLAEDELRDAV-LLVFANKQDLPNAM-N 118 (164)
T ss_dssp EEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGG---HH---HHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTCC-C
T ss_pred EEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHhchhhcCCe-EEEEEECcCCcCCC-C
Confidence 999999999998888888999999999999987521 11 22222322222 2677 99999999994321 1
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.+++.+.+... ... ...++++++||++|.|+.++++
T Consensus 119 ---~~~~~~~~~~~----~~~-~~~~~~~~~Sa~~~~gi~~l~~ 154 (164)
T 1r8s_A 119 ---AAEITDKLGLH----SLR-HRNWYIQATCATSGDGLYEGLD 154 (164)
T ss_dssp ---HHHHHHHTTGG----GCS-SCCEEEEECBTTTTBTHHHHHH
T ss_pred ---HHHHHHHhCcc----ccc-CccEEEEEcccCCCcCHHHHHH
Confidence 12233322211 111 1246899999999999998643
No 82
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.73 E-value=2.9e-18 Score=177.88 Aligned_cols=149 Identities=20% Similarity=0.210 Sum_probs=107.1
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+++|++|+|||||+++|+...... .+...|+|++.....+.+.+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~------------------------------~~~~~gtT~d~~~~~~~~~~ 81 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSI------------------------------VSDYAGTTTDPVYKSMELHP 81 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------------------------------------CCCCEEEEEETT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCc------------------------------cCCCCCeeeeeEEEEEEECC
Confidence 456899999999999999999985432211 22337788888888888776
Q ss_pred e-EEEEEeCCCCcch-------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 160 T-RFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 160 ~-~i~liDtPGh~~f-------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
. .++|+|||||.+| ...+...+..+|++|+|+|+ +. ..++.+.+..++..++| +|+|+||+|
T Consensus 82 ~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~-------~~~~~~~l~~l~~~~~p-iIvV~NK~D 151 (423)
T 3qq5_A 82 IGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--AP-------TPYEDDVVNLFKEMEIP-FVVVVNKID 151 (423)
T ss_dssp TEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SC-------CHHHHHHHHHHHHTTCC-EEEECCCCT
T ss_pred CCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CC-------hHHHHHHHHHHHhcCCC-EEEEEeCcC
Confidence 5 9999999999877 34456677889999999999 32 25888999999999999 999999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+...... +..+++ .+.+ +++++++||++|.|+.++++
T Consensus 152 l~~~~~~-----~~~~~l---~~~~------g~~v~~vSAktg~gI~eL~~ 188 (423)
T 3qq5_A 152 VLGEKAE-----ELKGLY---ESRY------EAKVLLVSALQKKGFDDIGK 188 (423)
T ss_dssp TTTCCCT-----HHHHHS---SCCT------TCCCCCCSSCCTTSTTTHHH
T ss_pred CCCccHH-----HHHHHH---HHHc------CCCEEEEECCCCCCHHHHHH
Confidence 9544321 122222 2222 35799999999999998644
No 83
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.73 E-value=1e-17 Score=175.85 Aligned_cols=158 Identities=22% Similarity=0.262 Sum_probs=106.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+++|++|+|||||+++|++....+. ....|.|.+.....+.+++
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v------------------------------~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALV------------------------------SPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEE------------------------------CCCC------CCEEEEETT
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCccccc------------------------------CCCCCCcCCceEEEEEECC
Confidence 3568999999999999999999954322111 1126778777777888899
Q ss_pred eEEEEEeCCCCcchHHH------------HHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEE
Q 010318 160 TRFTILDAPGHKSYVPN------------MISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 227 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~------------~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivvi 227 (513)
..+.++||||++++... ....+..+|++++|+|+..+.. .+..+...++...++| +|+|+
T Consensus 228 ~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~-------~~~~~i~~~l~~~~~~-~ilv~ 299 (439)
T 1mky_A 228 RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGIT-------RQDQRMAGLMERRGRA-SVVVF 299 (439)
T ss_dssp EEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCC-------HHHHHHHHHHHHTTCE-EEEEE
T ss_pred EEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCC-------HHHHHHHHHHHHcCCC-EEEEE
Confidence 99999999998654322 2445778999999999998743 3555566667778988 99999
Q ss_pred eeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 228 NKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 228 NK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
||+|+... .....+++.+.+...+...+ ..+++++||++|.|+.++++
T Consensus 300 NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~SA~~g~gv~~l~~ 347 (439)
T 1mky_A 300 NKWDLVVH--REKRYDEFTKLFREKLYFID-----YSPLIFTSADKGWNIDRMID 347 (439)
T ss_dssp ECGGGSTT--GGGCHHHHHHHHHHHCGGGT-----TSCEEECBTTTTBSHHHHHH
T ss_pred ECccCCCc--hhhHHHHHHHHHHHHhccCC-----CCcEEEEECCCCCCHHHHHH
Confidence 99999432 22223344444444444333 35899999999999998765
No 84
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.73 E-value=1e-17 Score=151.06 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=101.8
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|++|+|||||+++|+...- ... .....|.+.......+....
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 54 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSF--DPN---------------------------INPTIGASFMTKTVQYQNEL 54 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCC--CTT---------------------------CCCCCSEEEEEEEEEETTEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCC--CCC---------------------------CCCceeEEEEEEEEEECCeE
Confidence 4568999999999999999999953221 000 01124445444444444445
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~~~ 236 (513)
..+.|+||||+++|...+...++.+|++|+|+|+++... + ......+..+... ++| +++|+||+|+....
T Consensus 55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~~~-iilv~nK~Dl~~~~ 127 (170)
T 1z0j_A 55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEET---F---STLKNWVRELRQHGPPSIV-VAIAGNKCDLTDVR 127 (170)
T ss_dssp EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTSE-EEEEEECTTCGGGC
T ss_pred EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCCc-EEEEEECCcccccc
Confidence 789999999999998888888899999999999987532 1 1223334444443 455 88899999994221
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+.. .++...+.... .++++++||++|.|+.+++
T Consensus 128 --~v~----~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~ 160 (170)
T 1z0j_A 128 --EVM----ERDAKDYADSI------HAIFVETSAKNAININELF 160 (170)
T ss_dssp --CSC----HHHHHHHHHHT------TCEEEECBTTTTBSHHHHH
T ss_pred --ccC----HHHHHHHHHHc------CCEEEEEeCCCCcCHHHHH
Confidence 100 11222233333 2589999999999999864
No 85
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.73 E-value=4e-17 Score=152.67 Aligned_cols=155 Identities=14% Similarity=0.112 Sum_probs=101.1
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
....++|+++|++|+|||||+++|+... ... .....++.+.....+..+
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~ 74 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGA--FSE-----------------------------RQGSTIGVDFTMKTLEIQ 74 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSC--C---------------------------------------CEEEEEEEET
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCC--CCC-----------------------------CCCCCcceEEEEEEEEEC
Confidence 4567999999999999999999994321 110 000112222333344555
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCC
Q 010318 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 233 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~ 233 (513)
+ ..+.|+||||+++|...+...++.+|++|+|+|+++... |+ .....+..+.. .++| +|+|+||+|+.
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~ 147 (201)
T 2hup_A 75 GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSS---FL---SVPHWIEDVRKYAGSNIV-QLLIGNKSDLS 147 (201)
T ss_dssp TEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECTTCG
T ss_pred CEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCC-EEEEEECCccc
Confidence 5 589999999999999988888999999999999987521 11 22333444443 3577 89999999994
Q ss_pred CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... ... .+++..++...++. +++++||++|.|+.++++
T Consensus 148 ~~~--~v~----~~~~~~~~~~~~~~-----~~~~~SA~~g~gi~~l~~ 185 (201)
T 2hup_A 148 ELR--EVS----LAEAQSLAEHYDIL-----CAIETSAKDSSNVEEAFL 185 (201)
T ss_dssp GGC--CSC----HHHHHHHHHHTTCS-----EEEECBTTTTBSHHHHHH
T ss_pred ccc--ccC----HHHHHHHHHHcCCC-----EEEEEeCCCCCCHHHHHH
Confidence 211 101 12233344444431 799999999999998654
No 86
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=150.78 Aligned_cols=152 Identities=18% Similarity=0.133 Sum_probs=90.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
+.++|+++|++|+|||||+++|....... .....|.+.......+.....
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 52 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERD------------------------------LHEQLGEDVYERTLTVDGEDT 52 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----------------------------------CCCSSSSEEEEEEEETTEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcc------------------------------ccCccccceeEEEEEECCEEE
Confidence 56899999999999999999995321100 001134444333333322335
Q ss_pred EEEEEeCCCCcch--HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc----CCCeEEEEEeeccCCC
Q 010318 161 RFTILDAPGHKSY--VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHT 234 (513)
Q Consensus 161 ~i~liDtPGh~~f--~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~----~ip~~ivviNK~D~~~ 234 (513)
.+.|+||||+..+ .......++.+|++|+|+|+++... |+ ...+.+..+... ++| +++|+||+|+..
T Consensus 53 ~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~~~p-iilv~NK~Dl~~ 125 (175)
T 2nzj_A 53 TLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGS---FE---SASELRIQLRRTHQADHVP-IILVGNKADLAR 125 (175)
T ss_dssp EEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHH---HH---HHHHHHHHHHHCC----CC-EEEEEECTTCTT
T ss_pred EEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhccCCCC-EEEEEEChhhcc
Confidence 7899999999884 4444445678999999999986421 11 222333334443 688 999999999943
Q ss_pred CC-chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. .+.+ +...+....+ ++++++||++|.|+.++++
T Consensus 126 ~~~v~~~-------~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 126 CREVSVE-------EGRACAVVFD------CKFIETSATLQHNVAELFE 161 (175)
T ss_dssp TCCSCHH-------HHHHHHHHHT------SEEEECBTTTTBSHHHHHH
T ss_pred ccccCHH-------HHHHHHHHcC------CeEEEEecCCCCCHHHHHH
Confidence 21 1111 1222233333 4799999999999998654
No 87
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.73 E-value=3.4e-17 Score=152.89 Aligned_cols=153 Identities=19% Similarity=0.140 Sum_probs=102.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
..++|+++|++|+|||||+++|+...- ... .....|.+.......+.....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~---------------------------~~~t~~~~~~~~~~~~~~~~~ 57 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSF--TPA---------------------------FVSTVGIDFKVKTIYRNDKRI 57 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCC--CSC---------------------------CCCCCSEEEEEEEEEETTEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCC--CCC---------------------------cCCccceeEEEEEEEECCeEE
Confidence 468999999999999999999953211 000 001134444433333333456
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCCC-
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTVN- 236 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~~- 236 (513)
.+.|+||||+++|...+...++.+|++|+|+|++.+.. ++ .....+..+.. .++| +++|+||+|+....
T Consensus 58 ~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~~~ 130 (203)
T 1zbd_A 58 KLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEES---FN---AVQDWSTQIKTYSWDNAQ-VLLVGNKCDMEDERV 130 (203)
T ss_dssp EEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHSCSSCE-EEEEEECTTCTTSCC
T ss_pred EEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCC-EEEEEECcccCcccc
Confidence 89999999999999988888999999999999987521 11 22333334443 3677 99999999994321
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... +++..+.+.++ ++++++||++|.|+.++++
T Consensus 131 ~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 131 VSS-------ERGRQLADHLG------FEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp SCH-------HHHHHHHHHHT------CEEEECBTTTTBSSHHHHH
T ss_pred cCH-------HHHHHHHHHCC------CeEEEEECCCCCCHHHHHH
Confidence 111 12223333443 4799999999999998755
No 88
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.73 E-value=1.7e-17 Score=155.13 Aligned_cols=154 Identities=14% Similarity=0.161 Sum_probs=99.5
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|+..... . .....++.+.....+..+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~-----------------------------~~~~t~~~~~~~~~~~~~ 53 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFS--N-----------------------------QYKATIGADFLTKEVMVD 53 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCC--S-----------------------------SCCCCCSEEEEEEEEESS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCC--C-----------------------------CCCCcccceEEEEEEEEC
Confidence 356789999999999999999999543211 0 001223333333334433
Q ss_pred --CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-H------cCCCeEEEEEee
Q 010318 159 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-T------LGVTKLLLVVNK 229 (513)
Q Consensus 159 --~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-~------~~ip~~ivviNK 229 (513)
...+.|+||||+++|...+...++.+|++|+|+|++.+.. ++ .....+..+. . .++| +++|+||
T Consensus 54 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-iilv~nK 126 (207)
T 1vg8_A 54 DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNT---FK---TLDSWRDEFLIQASPRDPENFP-FVVLGNK 126 (207)
T ss_dssp SCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHCCSSGGGSC-EEEEEEC
T ss_pred CEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHhcccccCCCCc-EEEEEEC
Confidence 4689999999999998877788899999999999987532 11 1222222222 2 3678 8999999
Q ss_pred ccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 230 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 230 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+|+.......+. +..+.... ..++++++||++|.|+.++++
T Consensus 127 ~Dl~~~~~~~~~-------~~~~~~~~-----~~~~~~~~Sa~~g~gi~~l~~ 167 (207)
T 1vg8_A 127 IDLENRQVATKR-------AQAWCYSK-----NNIPYFETSAKEAINVEQAFQ 167 (207)
T ss_dssp TTSSCCCSCHHH-------HHHHHHHT-----TSCCEEECBTTTTBSHHHHHH
T ss_pred CCCcccccCHHH-------HHHHHHhc-----CCceEEEEeCCCCCCHHHHHH
Confidence 999532222211 22222211 145899999999999999755
No 89
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.73 E-value=2.1e-17 Score=148.44 Aligned_cols=152 Identities=19% Similarity=0.146 Sum_probs=94.9
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
++.++|+++|++|+|||||+++|+... .... . ....+.+. ...+..++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~------------------------~---~~t~~~~~---~~~~~~~~ 49 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDE--FVED------------------------Y---EPTKADSY---RKKVVLDG 49 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC--CCSC------------------------C---CTTCCEEE---EEEEEETT
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCc--cCCC------------------------C---CCCcceEE---EEEEEECC
Confidence 356899999999999999999995322 1100 0 00011111 12233333
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCC
Q 010318 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 233 (513)
Q Consensus 160 --~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~ 233 (513)
..+.|+||||+++|...+...++.+|++++|+|+++... ++ .....+..+.. .++| +++++||+|+.
T Consensus 50 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~ 122 (168)
T 1u8z_A 50 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---FA---ATADFREQILRVKEDENVP-FLLVGNKSDLE 122 (168)
T ss_dssp EEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHCCTTSC-EEEEEECGGGG
T ss_pred EEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEECcccc
Confidence 579999999999999888888999999999999987421 11 12222222222 2678 99999999984
Q ss_pred CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... +... +++..+++..+ ++++++||++|.|+.++++
T Consensus 123 ~~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 159 (168)
T 1u8z_A 123 DKR--QVSV----EEAKNRADQWN------VNYVETSAKTRANVDKVFF 159 (168)
T ss_dssp GGC--CSCH----HHHHHHHHHHT------CEEEECCTTTCTTHHHHHH
T ss_pred ccC--ccCH----HHHHHHHHHcC------CeEEEeCCCCCCCHHHHHH
Confidence 321 1111 22233334433 4799999999999998643
No 90
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.73 E-value=2.7e-17 Score=154.97 Aligned_cols=156 Identities=22% Similarity=0.250 Sum_probs=94.1
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++.++|+++|++|+|||||+++|+... ... ....++.+ ...+..+
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~--~~~------------------------------~~~~~~~~--~~~~~~~ 49 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQ--YRD------------------------------TQTSITDS--SAIYKVN 49 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSC--CCC------------------------------BCCCCSCE--EEEEECS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC--ccc------------------------------ccCCccee--eEEEEec
Confidence 3467899999999999999999995322 110 00111222 2234444
Q ss_pred ---CeEEEEEeCCCCcchHH-HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH----H-----HcCCCeEEE
Q 010318 159 ---TTRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----K-----TLGVTKLLL 225 (513)
Q Consensus 159 ---~~~i~liDtPGh~~f~~-~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~----~-----~~~ip~~iv 225 (513)
+..+.|+||||+++|.. .+...++.+|++|+|+|++.. + .+..+....+ . ..++| +++
T Consensus 50 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~--~------~~~~~~~~~~~~~~~~~~~~~~~~p-iil 120 (214)
T 2fh5_B 50 NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAF--Q------REVKDVAEFLYQVLIDSMALKNSPS-LLI 120 (214)
T ss_dssp STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTH--H------HHHHHHHHHHHHHHHHHHTSTTCCE-EEE
T ss_pred CCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCc--C------HHHHHHHHHHHHHHhhhhhcccCCC-EEE
Confidence 57899999999999987 455567899999999999862 1 1222222221 1 12577 999
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhHhhhhh---------------------cc-----Ccc---cCCeeEEEeecccc--
Q 010318 226 VVNKMDDHTVNWSKERYDEIESKMTPFLKA---------------------SG-----YNV---KKDVQFLPISGLMG-- 274 (513)
Q Consensus 226 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~---------------------~g-----~~~---~~~~~iipiSa~~g-- 274 (513)
|+||+|+....... .+.+.+...+.. .+ |.. ...++++++||++|
T Consensus 121 v~nK~Dl~~~~~~~----~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~ 196 (214)
T 2fh5_B 121 ACNKQDIAMAKSAK----LIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRG 196 (214)
T ss_dssp EEECTTSTTCCCHH----HHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC----
T ss_pred EEECCCCCCcccHH----HHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCc
Confidence 99999995443222 233333333221 00 000 01578999999999
Q ss_pred ----ccccccc
Q 010318 275 ----LNMKTRV 281 (513)
Q Consensus 275 ----~gi~~l~ 281 (513)
.|+.+++
T Consensus 197 ~~~~~gv~~lf 207 (214)
T 2fh5_B 197 DTGSADIQDLE 207 (214)
T ss_dssp ---CCBCHHHH
T ss_pred cccccChHHHH
Confidence 9998853
No 91
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.73 E-value=7.1e-18 Score=155.16 Aligned_cols=153 Identities=19% Similarity=0.207 Sum_probs=101.2
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
++.++|+++|++|+|||||+++|+... ... ...|+......+..++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~--------------------------------~~~t~~~~~~~~~~~~ 61 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VDT--------------------------------ISPTLGFNIKTLEHRG 61 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CSS--------------------------------CCCCSSEEEEEEEETT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CCc--------------------------------ccccCccceEEEEECC
Confidence 467999999999999999999995322 000 0112222234455678
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 235 (513)
..+.|+||||+++|...+...++.+|++|+|+|+++... + ....+.+..+.. .++| +++|+||+|+...
T Consensus 62 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 134 (186)
T 1ksh_A 62 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR---M---QDCQRELQSLLVEERLAGAT-LLIFANKQDLPGA 134 (186)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGG---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHhChhcCCCc-EEEEEeCccCCCC
Confidence 999999999999998888888899999999999987521 1 122233333322 3677 9999999999432
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. ..+++.+.+. ..... ...++++++||++|.|+.++++
T Consensus 135 ~----~~~~~~~~~~----~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 172 (186)
T 1ksh_A 135 L----SCNAIQEALE----LDSIR-SHHWRIQGCSAVTGEDLLPGID 172 (186)
T ss_dssp C----CHHHHHHHTT----GGGCC-SSCEEEEECCTTTCTTHHHHHH
T ss_pred C----CHHHHHHHhC----hhhcc-CCceEEEEeeCCCCCCHHHHHH
Confidence 1 1222322221 11011 1256899999999999998644
No 92
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.73 E-value=3.2e-17 Score=152.58 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=98.8
Q ss_pred cCCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEE
Q 010318 77 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (513)
Q Consensus 77 ~~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~ 156 (513)
...++.++|+++|..|+|||||+++|.+ ..... ...+.+.......+.
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~---~~~~~-----------------------------~~~~~~~~~~~~~~~ 62 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFH---KMSPN-----------------------------ETLFLESTNKIYKDD 62 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHS---CCCGG-----------------------------GGGGCCCCCSCEEEE
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHh---cCCCc-----------------------------ceeeeccccceeeee
Confidence 3456779999999999999999997732 11110 012222222222222
Q ss_pred ---eCCeEEEEEeCCCCcchHHHH---HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEE
Q 010318 157 ---TETTRFTILDAPGHKSYVPNM---ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLL 225 (513)
Q Consensus 157 ---~~~~~i~liDtPGh~~f~~~~---~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~iv 225 (513)
.....+.|+||||+++|...+ ...++.+|++|+|+|+++..++ ........+.. .++| +++
T Consensus 63 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------~~~~~~~~l~~~~~~~~~~p-iil 134 (196)
T 3llu_A 63 ISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYME-------ALTRLHITVSKAYKVNPDMN-FEV 134 (196)
T ss_dssp ECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHH-------HHHHHHHHHHHHHHHCTTCE-EEE
T ss_pred ccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHH-------HHHHHHHHHHHHHhcCCCCc-EEE
Confidence 345789999999999997776 6778899999999999986221 22222222222 2677 999
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 226 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 226 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
|.||+|+...+........+..+....+...... ...++++++||++ .|+.+++
T Consensus 135 v~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~e~Sa~~-~~v~~~f 188 (196)
T 3llu_A 135 FIHKVDGLSDDHKIETQRDIHQRANDDLADAGLE-KLHLSFYLTSIYD-HSIFEAF 188 (196)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCT-TSCEEEEEECTTS-THHHHHH
T ss_pred EEeccccCchhhhhHHHhHHHHHHHHHHHHhhhh-cCCcceEEEEech-hhHHHHH
Confidence 9999998432211122333333333333332211 1247899999999 9999863
No 93
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=2.5e-17 Score=154.35 Aligned_cols=153 Identities=18% Similarity=0.127 Sum_probs=101.9
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
....++|+++|.+|+|||||+++|+... ... .....++.+.....+..+
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~ 71 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGL--FPP-----------------------------GQGATIGVDFMIKTVEIN 71 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSS--CCT-----------------------------TCCCCCSEEEEEEEEEET
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCC--CCC-----------------------------CCCCccceeEEEEEEEEC
Confidence 3567999999999999999999995321 110 011223333333445555
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCC
Q 010318 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 233 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~ 233 (513)
+ ..+.|+||||+++|...+...++.+|++|+|+|++.... |+ .....+..+.. .++| +++|+||+|+.
T Consensus 72 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~NK~Dl~ 144 (201)
T 2ew1_A 72 GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES---FR---CLPEWLREIEQYASNKVI-TVLVGNKIDLA 144 (201)
T ss_dssp TEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECGGGG
T ss_pred CEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCC-EEEEEECCCCc
Confidence 4 578999999999999888888999999999999987521 11 22333333433 2567 89999999984
Q ss_pred CCC-chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 234 TVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 234 ~~~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... ...+ +...+....+ ++++++||++|.|+.++++
T Consensus 145 ~~~~v~~~-------~~~~~~~~~~------~~~~~~Sa~~g~gv~~l~~ 181 (201)
T 2ew1_A 145 ERREVSQQ-------RAEEFSEAQD------MYYLETSAKESDNVEKLFL 181 (201)
T ss_dssp GGCSSCHH-------HHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred cccccCHH-------HHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 211 1111 1222333333 4799999999999998754
No 94
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.72 E-value=2e-17 Score=148.77 Aligned_cols=154 Identities=16% Similarity=0.113 Sum_probs=97.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
+.++|+++|++|+|||||+++|+.. ...... ....+... .....+.....
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~--~~~~~~---------------------------~~t~~~~~-~~~~~~~~~~~ 51 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQG--IFVEKY---------------------------DPTIEDSY-RKQVEVDCQQC 51 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC--CCCCSC---------------------------CCCSEEEE-EEEEESSSCEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC--CCCCCC---------------------------CCCccceE-EEEEEECCEEE
Confidence 4689999999999999999999532 111000 00011111 11122233356
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCC
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~ 236 (513)
.+.|+||||+++|...+...++.+|++++|+|++.... ++ .....+..+.. .++| +++++||+|+....
T Consensus 52 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~ 124 (167)
T 1c1y_A 52 MLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQST---FN---DLQDLREQILRVKDTEDVP-MILVGNKCDLEDER 124 (167)
T ss_dssp EEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHCCSCCC-EEEEEECTTCGGGC
T ss_pred EEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCcCCCc-EEEEEECccccccc
Confidence 79999999999998888888899999999999987421 11 22223322322 3678 99999999994321
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.... +++..+.+.++ ..+++++||++|.|+.++++
T Consensus 125 --~~~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 125 --VVGK----EQGQNLARQWC-----NCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp --CSCH----HHHHHHHHHTT-----SCEEEECBTTTTBSHHHHHH
T ss_pred --cCCH----HHHHHHHHHcc-----CCcEEEecCCCCCCHHHHHH
Confidence 1011 12222333331 35899999999999998643
No 95
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.72 E-value=1.7e-17 Score=152.16 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=97.7
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC-
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~- 158 (513)
++.++|+++|++|+|||||+++|... ...... ....+... ...+..+
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~--~~~~~~---------------------------~~t~~~~~---~~~~~~~~ 50 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTN--AFPGEY---------------------------IPTVFDNY---SANVMVDG 50 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS--SCCSSC---------------------------CCCSCCEE---EEEEEETT
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcC--CCCCCc---------------------------CCccccee---EEEEEECC
Confidence 45689999999999999999999532 111100 00011111 1122233
Q ss_pred -CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCCC
Q 010318 159 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 -~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~ip~~ivviNK~D~~~ 234 (513)
...+.|+||||+++|...+...++.+|++|+|+|++.+.. ++ ... ..+..+... ++| +++|+||+|+..
T Consensus 51 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 123 (186)
T 1mh1_A 51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLRD 123 (186)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHSTTSC-EEEEEECHHHHT
T ss_pred EEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhh---HH---HHHHHHHHHHHHhCCCCC-EEEEeEcccccc
Confidence 3567799999999998777778899999999999987521 10 111 233344443 788 999999999843
Q ss_pred CCchHHHHHHHH---------hhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIE---------SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~---------~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. ...+.+. ++...+.+..++ .+++++||++|.|+.++++
T Consensus 124 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 172 (186)
T 1mh1_A 124 DK---DTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVFD 172 (186)
T ss_dssp CH---HHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHHH
T ss_pred cc---hhhhhhcccccccCCHHHHHHHHHhcCC-----cEEEEecCCCccCHHHHHH
Confidence 21 1111111 122233333332 3899999999999998643
No 96
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.72 E-value=7.3e-18 Score=164.30 Aligned_cols=161 Identities=15% Similarity=0.175 Sum_probs=102.7
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|++........ ...++|.......+.+.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~ 69 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKL-----------------------------GSQTLTKTCSKSQGSWG 69 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCT-----------------------------TSCCCCCSCEEEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCC-----------------------------CCCceeeeeEEEEEEeC
Confidence 3467899999999999999999997543321110 01235666666667888
Q ss_pred CeEEEEEeCCCCcch-----------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-----CCCe
Q 010318 159 TTRFTILDAPGHKSY-----------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTK 222 (513)
Q Consensus 159 ~~~i~liDtPGh~~f-----------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~-----~ip~ 222 (513)
+..++|+||||+.++ .+.+...++.+|++|+|+|+.. + ..+....+..+... +.|
T Consensus 70 ~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~--~------~~~~~~~~~~l~~~~~~~~~~~- 140 (260)
T 2xtp_A 70 NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR--Y------TSQDQQAAQRVKEIFGEDAMGH- 140 (260)
T ss_dssp TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC--C------CHHHHHHHHHHHHHHCGGGGGG-
T ss_pred CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC--C------CHHHHHHHHHHHHHhCchhhcc-
Confidence 999999999998765 2233335678999999999985 2 14556666666655 567
Q ss_pred EEEEEe-eccCCCCCchHHHHHHHH----hhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 223 LLLVVN-KMDDHTVNWSKERYDEIE----SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 223 ~ivviN-K~D~~~~~~~~~~~~~i~----~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.|+++| |+|+...+. .. .+. ..+..++..++.... .+..+++||++|.|+.++++
T Consensus 141 ~i~vv~nK~Dl~~~~~--~~--~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~SA~~~~gv~~l~~ 200 (260)
T 2xtp_A 141 TIVLFTHKEDLNGGSL--MD--YMHDSDNKALSKLVAACGGRIC-AFNNRAEGSNQDDQVKELMD 200 (260)
T ss_dssp EEEEEECGGGGTTCCH--HH--HHHHCCCHHHHHHHHHTTTCEE-ECCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEEcccccCCccH--HH--HHHhcchHHHHHHHHHhCCeEE-EecCcccccccHHHHHHHHH
Confidence 667777 999953221 11 111 122333443332100 00118999999999998754
No 97
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.72 E-value=1.6e-17 Score=149.92 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=92.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC-
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~- 158 (513)
.+.++|+++|++|+|||||+++|+...- .. .....++.+.....+..+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~~-----------------------------~~~~t~~~~~~~~~~~~~~ 52 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKF--ND-----------------------------KHITTLGASFLTKKLNIGG 52 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCC--CS-----------------------------SCCCCCSCEEEEEEEESSS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCC--Cc-----------------------------CCCCccceEEEEEEEEECC
Confidence 4568999999999999999999953211 10 000122222222233333
Q ss_pred -CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCC
Q 010318 159 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 -~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~ 234 (513)
...+.|+||||+++|...+...++.+|++|+|+|+++... + ......+..+.. .++| +++++||+|+..
T Consensus 53 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 125 (170)
T 1z08_A 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS---F---QKVKNWVKELRKMLGNEIC-LCIVGNKIDLEK 125 (170)
T ss_dssp CEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHGGGSE-EEEEEECGGGGG
T ss_pred EEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEECccccc
Confidence 3578899999999998888778899999999999987521 1 122223333332 4677 899999999943
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. .... ++...+.+..+ ++++++||++|.|+.++++
T Consensus 126 ~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 126 ER--HVSI----QEAESYAESVG------AKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp GC--CSCH----HHHHHHHHHTT------CEEEEEBTTTTBSHHHHHH
T ss_pred cc--ccCH----HHHHHHHHHcC------CeEEEecCCCCCCHHHHHH
Confidence 11 1111 12233334433 4799999999999998643
No 98
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.4e-17 Score=154.19 Aligned_cols=156 Identities=16% Similarity=0.117 Sum_probs=106.0
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
....++|+++|++|+|||||+++|+...-... .....|.+.......+...
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~~ 70 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPA-----------------------------FVSTVGIDFKVKTVYRHEK 70 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCC-----------------------------EEEEETTTEEEEEEEETTT
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcc-----------------------------cCCCeeeEEEEEEEEECCE
Confidence 34679999999999999999999964321100 0011344444444445556
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~ 235 (513)
...+.|+||||++.|...+...++.+|++|+|+|+++... |+ .....+..+.. .++| +++|+||+|+...
T Consensus 71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~~ 143 (191)
T 3dz8_A 71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEES---FN---AVQDWATQIKTYSWDNAQ-VILVGNKCDMEEE 143 (191)
T ss_dssp TEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCC-EEEEEECCCCccc
Confidence 7889999999999999999889999999999999987421 11 23344444444 3677 8999999998422
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. ... .++...+....+ ++++++||++|.|+.++++
T Consensus 144 ~--~~~----~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 144 R--VVP----TEKGQLLAEQLG------FDFFEASAKENISVRQAFE 178 (191)
T ss_dssp C--CSC----HHHHHHHHHHHT------CEEEECBTTTTBSHHHHHH
T ss_pred c--ccC----HHHHHHHHHHcC------CeEEEEECCCCCCHHHHHH
Confidence 1 111 112223333333 4799999999999998754
No 99
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.72 E-value=2.1e-17 Score=154.91 Aligned_cols=156 Identities=17% Similarity=0.174 Sum_probs=98.9
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|+. +.+... ....+.+.....+..+
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~--~~~~~~------------------------------~~~t~~~~~~~~~~~~ 74 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTT--NAFPGE------------------------------YIPTVFDNYSANVMVD 74 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHH--SCCCC-------------------------------CCCCSEEEEEEEEECC
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHh--CCCCCC------------------------------cCCeecceeEEEEEEC
Confidence 45679999999999999999999853 221110 0111112222223333
Q ss_pred --CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCC
Q 010318 159 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDH 233 (513)
Q Consensus 159 --~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~ip~~ivviNK~D~~ 233 (513)
...+.|+||||+++|.......++.+|++|+|+|+++... ++ ... ..+..+... ++| +|+|+||+|+.
T Consensus 75 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 147 (204)
T 4gzl_A 75 GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLR 147 (204)
T ss_dssp -CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCSSCC-EEEEEECHHHH
T ss_pred CEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEechhhc
Confidence 3556699999999998888888899999999999997531 10 111 233344444 788 99999999994
Q ss_pred CCCchHHHHHHH---------HhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 234 TVNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 234 ~~~~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
... ...+.+ .++...+.+..++ .+++++||++|.|+.+++
T Consensus 148 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~~l~ 196 (204)
T 4gzl_A 148 DDK---DTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVF 196 (204)
T ss_dssp TCH---HHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHH
T ss_pred cch---hhhhhhhccccccccHHHHHHHHHhcCC-----cEEEEeeCCCCCCHHHHH
Confidence 321 111111 1222334444443 379999999999999864
No 100
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.72 E-value=5e-17 Score=150.90 Aligned_cols=154 Identities=16% Similarity=0.196 Sum_probs=97.0
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++.++|+++|++|+|||||+++|.. +.... ...|+......+...
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~--~~~~~--------------------------------~~~t~~~~~~~~~~~ 71 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKL--GEIVT--------------------------------TIPTIGFNVETVEYK 71 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCS--SCCEE--------------------------------EEEETTEEEEEEEET
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHh--CCccc--------------------------------cCCcCceeEEEEEEC
Confidence 45679999999999999999999832 11100 011222333456668
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~ 234 (513)
+..+.|+||||+++|...+...++.+|++|+|+|+++... ++ ...+.+..+.. .++| +++|+||+|+..
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl~~ 144 (192)
T 2b6h_A 72 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---VQ---ESADELQKMLQEDELRDAV-LLVFANKQDMPN 144 (192)
T ss_dssp TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGG---HH---HHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---HH---HHHHHHHHHhcccccCCCe-EEEEEECCCCCC
Confidence 8999999999999998877778899999999999987521 11 22233322222 2677 999999999943
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. ..+++.+.+.... .. ...++++++||++|.|+.++++
T Consensus 145 ~~----~~~~i~~~~~~~~----~~-~~~~~~~~~SA~~g~gi~~l~~ 183 (192)
T 2b6h_A 145 AM----PVSELTDKLGLQH----LR-SRTWYVQATCATQGTGLYDGLD 183 (192)
T ss_dssp CC----CHHHHHHHTTGGG----CS-SCCEEEEECBTTTTBTHHHHHH
T ss_pred CC----CHHHHHHHhCccc----cc-CCceEEEECcCCCcCCHHHHHH
Confidence 21 1223333222111 11 1246899999999999998643
No 101
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.72 E-value=1.4e-17 Score=152.84 Aligned_cols=154 Identities=18% Similarity=0.204 Sum_probs=99.5
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
...+.++|+++|++|+|||||+++|+...- .. ...|+......+..
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~--------------------------------~~~t~~~~~~~~~~ 62 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV--VH--------------------------------TSPTIGSNVEEIVI 62 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC--EE--------------------------------EECCSSSSCEEEEE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC--Cc--------------------------------cCCcCceeeEEEEE
Confidence 345679999999999999999999953210 00 01111122234556
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCC
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDH 233 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~ 233 (513)
++..+.|+||||+++|...+...++.+|++|+|+|+++... + ....+.+..+.. .++| +++|+||+|+.
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~ 135 (181)
T 2h17_A 63 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER---I---SVTREELYKMLAHEDLRKAG-LLIFANKQDVK 135 (181)
T ss_dssp TTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTT---H---HHHHHHHHHHHTCGGGTTCE-EEEEEECTTST
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHhChhhCCCe-EEEEEECCCcc
Confidence 78999999999999998888888899999999999987621 1 122333333332 4677 99999999994
Q ss_pred CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
... . .+++.+.+. ...+. ...++++++||++|.|+.+++
T Consensus 136 ~~~-~---~~~i~~~~~----~~~~~-~~~~~~~~~Sa~~g~gi~~l~ 174 (181)
T 2h17_A 136 ECM-T---VAEISQFLK----LTSIK-DHQWHIQACCALTGEGLCQGL 174 (181)
T ss_dssp TCC-C---HHHHHHHTT----GGGCC-SSCEEEEECBTTTTBTHHHHH
T ss_pred cCC-C---HHHHHHHhC----ccccc-CCceEEEEccCCCCcCHHHHH
Confidence 321 1 122222221 11111 124689999999999999853
No 102
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.72 E-value=3.1e-17 Score=147.64 Aligned_cols=153 Identities=18% Similarity=0.129 Sum_probs=98.1
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC-
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~- 158 (513)
...++|+++|++|+|||||+++|+... ... .....++.+.....+..+
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 51 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGI--FTK-----------------------------DYKKTIGVDFLERQIQVND 51 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCC--CCC-----------------------------CSSCCCSSSEEEEEEEETT
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCC--CCC-----------------------------CCCCceEEEEEEEEEEECC
Confidence 356899999999999999999995321 110 000111112222233333
Q ss_pred -CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCC
Q 010318 159 -TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 159 -~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~ 235 (513)
...+.|+||||+++|...+...++.+|++|+|+|++.... + ......+..+.. .++| +++|+||+|+...
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 124 (168)
T 1z2a_A 52 EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRES---F---EAISSWREKVVAEVGDIP-TALVQNKIDLLDD 124 (168)
T ss_dssp EEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHH---H---HTHHHHHHHHHHHHCSCC-EEEEEECGGGGGG
T ss_pred EEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhCCCCC-EEEEEECcccCcc
Confidence 4589999999999998777778889999999999987531 1 122233333332 3778 9999999998421
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. +... +++..+.+..+ ++++++||++|.|+.++++
T Consensus 125 ~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~~i~~l~~ 159 (168)
T 1z2a_A 125 S--CIKN----EEAEGLAKRLK------LRFYRTSVKEDLNVSEVFK 159 (168)
T ss_dssp C--SSCH----HHHHHHHHHHT------CEEEECBTTTTBSSHHHHH
T ss_pred c--ccCH----HHHHHHHHHcC------CeEEEEecCCCCCHHHHHH
Confidence 1 1011 12233344443 4799999999999998643
No 103
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=5.5e-17 Score=150.59 Aligned_cols=153 Identities=18% Similarity=0.155 Sum_probs=98.0
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|++|+|||||+++|+... ..... ....+.+.. ....+....
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~---------------------------~~t~~~~~~-~~~~~~~~~ 55 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGT--FRDTY---------------------------IPTIEDTYR-QVISCDKSV 55 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSC--CCCTT---------------------------SCCCCEEEE-EEEEETTEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCC--CCCcc---------------------------cCcccccee-EEEEECCEE
Confidence 456899999999999999999995421 11000 000111111 111222234
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEEEEeeccCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ivviNK~D~~~ 234 (513)
..+.|+||||+++|...+...+..+|++|+|+|++.... ++ .....+..+.. .++| +++|+||+|+..
T Consensus 56 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~p-iilv~nK~Dl~~ 128 (199)
T 2gf0_A 56 CTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQS---LE---ELGPIYKLIVQIKGSVEDIP-VMLVGNKCDETQ 128 (199)
T ss_dssp EEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHH---HH---TTHHHHHHHHHHHSCGGGSC-EEEEEECTTCSS
T ss_pred EEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHhcCCCCCC-EEEEEECccCCc
Confidence 579999999999999888888899999999999987421 11 22233333332 2678 999999999953
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
....... ...+...++ ++++++||++|.|+.++++
T Consensus 129 ~~~~~~~-------~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 129 REVDTRE-------AQAVAQEWK------CAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp CSSCHHH-------HHHHHHHHT------CEEEECBTTTTBSHHHHHH
T ss_pred cccCHHH-------HHHHHHHhC------CeEEEEecCCCCCHHHHHH
Confidence 2222222 222233333 4799999999999998643
No 104
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.72 E-value=2.4e-17 Score=152.56 Aligned_cols=153 Identities=18% Similarity=0.177 Sum_probs=100.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|+...-. .. .....|.+... ..+..+
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~---------------------------~~~t~~~~~~~--~~~~~~ 66 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--PV---------------------------HDLTIGVEFGA--RMVNID 66 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCC--C--------------------------------CCSSEEE--EEEEET
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCC--CC---------------------------CCCcccceeEE--EEEEEC
Confidence 356799999999999999999999542211 00 00012332322 233334
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCC
Q 010318 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 233 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~ 233 (513)
+ ..+.|+||||+++|...+...++.+|++|+|+|++.... + ......+..+... ++| +++|+||+|+.
T Consensus 67 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~ 139 (191)
T 2a5j_A 67 GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLTSWLEDARQHSSSNMV-IMLIGNKSDLE 139 (191)
T ss_dssp TEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCG
T ss_pred CEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECcccC
Confidence 3 589999999999998877788899999999999987531 1 1233344444433 677 89999999994
Q ss_pred CCC-chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 234 TVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 234 ~~~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... ... ++...+....+ ++++++||++|.|+.++++
T Consensus 140 ~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 176 (191)
T 2a5j_A 140 SRRDVKR-------EEGEAFAREHG------LIFMETSAKTACNVEEAFI 176 (191)
T ss_dssp GGCCSCH-------HHHHHHHHHHT------CEEEEECTTTCTTHHHHHH
T ss_pred CccccCH-------HHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 211 111 12223333433 4799999999999998754
No 105
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.72 E-value=6.6e-17 Score=149.80 Aligned_cols=153 Identities=19% Similarity=0.164 Sum_probs=99.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+..+|+++|++|+|||||+++|.... ... ...|+......+..++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~--~~~--------------------------------~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDR--LAT--------------------------------LQPTWHPTSEELAIGN 66 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSC--CCC--------------------------------CCCCCSCEEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC--CCc--------------------------------cccCCCCCeEEEEECC
Confidence 456799999999999999999995321 100 1112222334566778
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~ 235 (513)
..+.++||||+++|...+...++.+|++|+|+|++++.. |+ .....+..+. ..++| +++|+||+|+...
T Consensus 67 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 139 (190)
T 1m2o_B 67 IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPER---FD---EARVELDALFNIAELKDVP-FVILGNKIDAPNA 139 (190)
T ss_dssp EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGG---HH---HHHHHHHHHHTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHH---HH---HHHHHHHHHHcchhhcCCC-EEEEEECCCCcCC
Confidence 999999999999998777777889999999999997621 11 2222232222 24677 9999999999532
Q ss_pred CchHHHHHHHHhhhHhhhhhcc------CcccCCeeEEEeeccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASG------YNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g------~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.+.+ ++.+ .+.... +.....++++++||++|.|+.+++
T Consensus 140 -~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 183 (190)
T 1m2o_B 140 -VSEA---ELRS----ALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAF 183 (190)
T ss_dssp -CCHH---HHHH----HTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHH
T ss_pred -CCHH---HHHH----HhCCccccccccccccceEEEEEeECCcCCCHHHHH
Confidence 1222 2222 222111 011125789999999999999853
No 106
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1e-16 Score=144.61 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=96.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
+.++|+++|++|+|||||+++|+... .... + ....+.+.. ....+.....
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~--------------------~-------~~t~~~~~~-~~~~~~~~~~ 51 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGT--FRES--------------------Y-------IPTVEDTYR-QVISCDKSIC 51 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCC--CCSS--------------------C-------CCCSCEEEE-EEEEETTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCC--CCCC--------------------C-------CCCccccEE-EEEEECCEEE
Confidence 35899999999999999999995321 1100 0 000111111 1112222345
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEEEEeeccCCCC
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ivviNK~D~~~~ 235 (513)
.+.|+||||+++|...+...++.+|++|+|+|++.... + ......+..+.. .++| +++++||+|+...
T Consensus 52 ~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~---~---~~~~~~~~~i~~~~~~~~~~p-ii~v~nK~Dl~~~ 124 (172)
T 2erx_A 52 TLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQS---L---EELKPIYEQICEIKGDVESIP-IMLVGNKCDESPS 124 (172)
T ss_dssp EEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHH---H---HTTHHHHHHHHHHHC---CCC-EEEEEECGGGGGG
T ss_pred EEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHhCCCCCCC-EEEEEEccccccc
Confidence 78999999999999888888999999999999987531 1 133334433433 2678 9999999998432
Q ss_pred C-chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 236 N-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 236 ~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
. .... +...+....+ ++++++||++|.|+.+++
T Consensus 125 ~~v~~~-------~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~ 158 (172)
T 2erx_A 125 REVQSS-------EAEALARTWK------CAFMETSAKLNHNVKELF 158 (172)
T ss_dssp CCSCHH-------HHHHHHHHHT------CEEEECBTTTTBSHHHHH
T ss_pred cccCHH-------HHHHHHHHhC------CeEEEecCCCCcCHHHHH
Confidence 1 1111 1122233332 479999999999999853
No 107
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.71 E-value=3.4e-17 Score=149.40 Aligned_cols=154 Identities=16% Similarity=0.179 Sum_probs=89.0
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|+...- .. .....++.+.....+..+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~ 53 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKY--SQ-----------------------------QYKATIGADFLTKEVTVD 53 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCC--CT-----------------------------TC---CCCSCEEEEECCS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcC--Cc-----------------------------ccCCccceEEEEEEEEEc
Confidence 35679999999999999999999954221 10 000112222222333333
Q ss_pred ---CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-------cCCCeEEEEEe
Q 010318 159 ---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-------LGVTKLLLVVN 228 (513)
Q Consensus 159 ---~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-------~~ip~~ivviN 228 (513)
...+.|+||||+++|...+...++.+|++|+|+|+++... ++ .....+..+.. .++| +++++|
T Consensus 54 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv~n 126 (182)
T 1ky3_A 54 GDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS---FE---NIKSWRDEFLVHANVNSPETFP-FVILGN 126 (182)
T ss_dssp SSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHH---HH---THHHHHHHHHHHHCCSCTTTCC-EEEEEE
T ss_pred CCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHH---HH---HHHHHHHHHHHHhcccCcCCCc-EEEEEE
Confidence 4689999999999999888888899999999999987532 11 22222222222 4678 899999
Q ss_pred eccCCCCC--chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 229 KMDDHTVN--WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 229 K~D~~~~~--~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+|+.... ...+ ++..+.+.. ..++++++||++|.|+.++++
T Consensus 127 K~Dl~~~~~~v~~~-------~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~ 170 (182)
T 1ky3_A 127 KIDAEESKKIVSEK-------SAQELAKSL-----GDIPLFLTSAKNAINVDTAFE 170 (182)
T ss_dssp CTTSCGGGCCSCHH-------HHHHHHHHT-----TSCCEEEEBTTTTBSHHHHHH
T ss_pred CCccccccccCCHH-------HHHHHHHhc-----CCCeEEEEecCCCCCHHHHHH
Confidence 99984221 1111 122222211 145899999999999998644
No 108
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.71 E-value=1e-16 Score=147.28 Aligned_cols=152 Identities=20% Similarity=0.242 Sum_probs=99.8
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|++|+|||||+++|... ... ......|.+ ...+..++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~--~~~----------------------------~~~~t~g~~----~~~~~~~~ 59 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE--DIS----------------------------HITPTQGFN----IKSVQSQG 59 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS--CCE----------------------------EEEEETTEE----EEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC--CCC----------------------------cccCcCCeE----EEEEEECC
Confidence 45689999999999999999998421 000 000112322 23455678
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-H---HcCCCeEEEEEeeccCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~-~---~~~ip~~ivviNK~D~~~~ 235 (513)
..+.++||||++.|...+...+..+|++|+|+|+++... |+ ...+.+..+ . ..++| +++|+||+|+...
T Consensus 60 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 132 (181)
T 1fzq_A 60 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKR---FE---ETGQELTELLEEEKLSCVP-VLIFANKQDLLTA 132 (181)
T ss_dssp EEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGG---HH---HHHHHHHHHTTCGGGTTCC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHH---HH---HHHHHHHHHHhChhhcCCC-EEEEEECcCcccC
Confidence 999999999999999888888899999999999987521 11 222222222 2 13677 9999999999533
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
. . .+++.+.+. ..... ...++++++||++|.|+.+++
T Consensus 133 ~-~---~~~~~~~~~----~~~~~-~~~~~~~~~Sa~~g~gi~~l~ 169 (181)
T 1fzq_A 133 A-P---ASEIAEGLN----LHTIR-DRVWQIQSCSALTGEGVQDGM 169 (181)
T ss_dssp C-C---HHHHHHHTT----GGGCC-SSCEEEEECCTTTCTTHHHHH
T ss_pred C-C---HHHHHHHhC----chhcc-CCceEEEEccCCCCCCHHHHH
Confidence 2 1 122322221 11111 124689999999999999853
No 109
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.71 E-value=4.3e-17 Score=148.53 Aligned_cols=152 Identities=16% Similarity=0.172 Sum_probs=97.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|+... .... . ....+.... ..+..+
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~--~~~~------------------------~---~~t~~~~~~---~~~~~~ 53 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSY--FVSD------------------------Y---DPTIEDSYT---KICSVD 53 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSS--CCSS------------------------C---CTTCCEEEE---EEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCc--Cccc------------------------c---CCCcCceEE---EEEEEC
Confidence 3467899999999999999999995431 1100 0 000112111 233444
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-H---HcCCCeEEEEEeeccC
Q 010318 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-K---TLGVTKLLLVVNKMDD 232 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~-~---~~~ip~~ivviNK~D~ 232 (513)
+ ..+.|+||||+++|...+...+..+|++|+|+|++.... +. .....+..+ . ..++| +++|+||+|+
T Consensus 54 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 126 (181)
T 2fn4_A 54 GIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQS---FN---EVGKLFTQILRVKDRDDFP-VVLVGNKADL 126 (181)
T ss_dssp TEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHTSSCCC-EEEEEECGGG
T ss_pred CEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 4 578999999999998777778889999999999987421 11 122222222 2 23678 9999999998
Q ss_pred CCCC-chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 233 HTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 233 ~~~~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.... .... +...+.... .++++++||++|.|+.++++
T Consensus 127 ~~~~~v~~~-------~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 164 (181)
T 2fn4_A 127 ESQRQVPRS-------EASAFGASH------HVAYFEASAKLRLNVDEAFE 164 (181)
T ss_dssp GGGCCSCHH-------HHHHHHHHT------TCEEEECBTTTTBSHHHHHH
T ss_pred ccccccCHH-------HHHHHHHHc------CCeEEEecCCCCCCHHHHHH
Confidence 4311 1111 122222332 35899999999999998754
No 110
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.71 E-value=7.5e-17 Score=148.79 Aligned_cols=153 Identities=18% Similarity=0.148 Sum_probs=89.2
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
+..+.++|+++|++|+|||||+++|+... .... ..+.+.......+..
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~ 64 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNH--FVDE------------------------------YDPTIEDSYRKQVVI 64 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSS--CCSC------------------------------CCTTCCEEEEEEEEE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCC--Cccc------------------------------cCCccceEEEEEEEE
Confidence 34567999999999999999999995321 1100 001111111122333
Q ss_pred CC--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeecc
Q 010318 158 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMD 231 (513)
Q Consensus 158 ~~--~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D 231 (513)
++ ..+.|+||||+++|...+...+..+|++++|+|+..... + ......+..+.. .++| +++|+||+|
T Consensus 65 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-~ilv~nK~D 137 (190)
T 3con_A 65 DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKS---F---ADINLYREQIKRVKDSDDVP-MVLVGNKCD 137 (190)
T ss_dssp TTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHHTCSCCC-EEEEEECTT
T ss_pred CCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHHhCCCCCe-EEEEEECCc
Confidence 43 569999999999998888888999999999999987521 1 122222333332 2678 999999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+....... +++..+.+..+ ++++++||++|.|+.++++
T Consensus 138 l~~~~~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 175 (190)
T 3con_A 138 LPTRTVDT-------KQAHELAKSYG------IPFIETSAKTRQGVEDAFY 175 (190)
T ss_dssp CSCCCSCH-------HHHHHHHHHHT------CCEEECCTTTCTTHHHHHH
T ss_pred CCcccCCH-------HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 85322222 22233344443 4799999999999998654
No 111
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.71 E-value=3.5e-17 Score=149.23 Aligned_cols=145 Identities=18% Similarity=0.176 Sum_probs=96.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
+..+|+++|++|+|||||+++|........ ....|.|.+.....+..++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~ 52 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIV------------------------------TDIAGTTRDVLREHIHIDGM 52 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCC------------------------------CSSTTCCCSCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccee------------------------------eCCCCceeceeeEEEEECCe
Confidence 447899999999999999999953221100 01145555555556677788
Q ss_pred EEEEEeCCCCcchH--------HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEee
Q 010318 161 RFTILDAPGHKSYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNK 229 (513)
Q Consensus 161 ~i~liDtPGh~~f~--------~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK 229 (513)
.+.++||||++++. ......++.+|++|+|+|++.... ....+.+..+... ++| +|+|+||
T Consensus 53 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s-------~~~~~~~~~~~~~~~~~~p-~ilv~NK 124 (172)
T 2gj8_A 53 PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDA-------VDPAEIWPEFIARLPAKLP-ITVVRNK 124 (172)
T ss_dssp EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCC-------CSHHHHCHHHHHHSCTTCC-EEEEEEC
T ss_pred EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCC-------HHHHHHHHHHHHhcccCCC-EEEEEEC
Confidence 89999999987641 122345789999999999988642 1223333333332 578 8999999
Q ss_pred ccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 230 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 230 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+|+.... ..+... ...+++++||++|.|+.++++
T Consensus 125 ~Dl~~~~-------------~~~~~~------~~~~~~~~SA~~g~gv~~l~~ 158 (172)
T 2gj8_A 125 ADITGET-------------LGMSEV------NGHALIRLSARTGEGVDVLRN 158 (172)
T ss_dssp HHHHCCC-------------CEEEEE------TTEEEEECCTTTCTTHHHHHH
T ss_pred ccCCcch-------------hhhhhc------cCCceEEEeCCCCCCHHHHHH
Confidence 9983211 001111 136899999999999998643
No 112
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.71 E-value=4.7e-18 Score=166.77 Aligned_cols=146 Identities=18% Similarity=0.133 Sum_probs=98.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeE
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 161 (513)
.++|+++|++|+|||||+++|.+..-. .....|+|++.....+.. +..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-------------------------------v~~~pg~tv~~~~~~~~~-~~~ 50 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-------------------------------VGNWPGVTVERKSGLVKK-NKD 50 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-------------------------------CCSSSCCCCSCEEEECTT-CTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-------------------------------ccCCCCCcEEEEEEEEec-CCe
Confidence 478999999999999999999422100 111257777666666655 778
Q ss_pred EEEEeCCCCcchH------HHHHHhh--hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCC
Q 010318 162 FTILDAPGHKSYV------PNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDH 233 (513)
Q Consensus 162 i~liDtPGh~~f~------~~~~~~~--~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~ 233 (513)
+.|+||||+.+|. ......+ ..+|++|+|+|++.. ......+..+...++| +|+|+||+|+.
T Consensus 51 l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~---------e~~~~~~~~l~~~~~p-~ilv~NK~Dl~ 120 (272)
T 3b1v_A 51 LEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNL---------ERNLYLTTQLIETGIP-VTIALNMIDVL 120 (272)
T ss_dssp EEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGH---------HHHHHHHHHHHHTCSC-EEEEEECHHHH
T ss_pred EEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCch---------HhHHHHHHHHHhcCCC-EEEEEEChhhC
Confidence 9999999998874 1122222 369999999999863 1334444556668999 99999999983
Q ss_pred CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... .+......+.+.+| ++++++||++|.|+.++++
T Consensus 121 ~~~-------~~~~~~~~l~~~lg------~~vi~~SA~~g~gi~el~~ 156 (272)
T 3b1v_A 121 DGQ-------GKKINVDKLSYHLG------VPVVATSALKQTGVDQVVK 156 (272)
T ss_dssp HHT-------TCCCCHHHHHHHHT------SCEEECBTTTTBSHHHHHH
T ss_pred CcC-------CcHHHHHHHHHHcC------CCEEEEEccCCCCHHHHHH
Confidence 110 01112222333333 4799999999999998643
No 113
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.71 E-value=7e-17 Score=150.70 Aligned_cols=160 Identities=18% Similarity=0.153 Sum_probs=95.7
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+..+|+++|++|+|||||+++|.. +.+.. ...|+......+..++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~--~~~~~--------------------------------~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD--DRLGQ--------------------------------HVPTLHPTSEELTIAG 68 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC--C--------------------------------------CCCCCSCEEEEETT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc--CCCCc--------------------------------cCCCCCceeEEEEECC
Confidence 4567899999999999999999832 11000 0112222234566778
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 235 (513)
..+.++||||+++|...+...++.+|++|+|+|+++... |. .....+..+.. .++| +++|+||+|+...
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl~~~ 141 (198)
T 1f6b_A 69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHER---LL---ESKEELDSLMTDETIANVP-ILILGNKIDRPEA 141 (198)
T ss_dssp EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGG---HH---HHHHHHHHHHTCGGGTTSC-EEEEEECTTSTTC
T ss_pred EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHhCcccCCCc-EEEEEECCCcccc
Confidence 999999999999988777777889999999999987521 11 22233332222 4678 9999999999532
Q ss_pred CchHHHHHHHHhhhHhhhhhc--cCc--ccCCeeEEEeeccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKAS--GYN--VKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~--g~~--~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.+.+...+............ ++. ....++++++||++|.|+.+++
T Consensus 142 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 190 (198)
T 1f6b_A 142 -ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 190 (198)
T ss_dssp -CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHH
T ss_pred -CCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHH
Confidence 22222222211110000000 000 0124689999999999999853
No 114
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.71 E-value=6.4e-17 Score=152.75 Aligned_cols=148 Identities=13% Similarity=0.131 Sum_probs=98.1
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC-
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~- 158 (513)
.+.++|+++|++++|||||+++|+... ... .....++.+.....+...
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~--~~~-----------------------------~~~~t~~~~~~~~~~~~~~ 71 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNK--FNP-----------------------------KFITTVGIDFREKRVVYNA 71 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSC--CCC-----------------------------EEEEEEEEEEEEEEEEEEC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCC--CCc-----------------------------CCCCceeEEEEEEEEEECC
Confidence 467999999999999999999994321 100 001112222222223222
Q ss_pred -----------CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH-HHHHH-------cC
Q 010318 159 -----------TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKT-------LG 219 (513)
Q Consensus 159 -----------~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l-~~~~~-------~~ 219 (513)
...+.|+||||+++|...+...++.+|++|+|+|++... +.+.+ .++.. .+
T Consensus 72 ~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~----------s~~~~~~~l~~i~~~~~~~~ 141 (217)
T 2f7s_A 72 QGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQ----------SFLNVRNWMSQLQANAYCEN 141 (217)
T ss_dssp -------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHH----------HHHHHHHHHHTCCCCCTTTC
T ss_pred ccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHH----------HHHHHHHHHHHHHHhcCcCC
Confidence 568999999999999988888899999999999998752 22222 22222 35
Q ss_pred CCeEEEEEeeccCCCC-CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 220 VTKLLLVVNKMDDHTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 220 ip~~ivviNK~D~~~~-~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+| +++|+||+|+... .... .++..+.+..+ ++++++||++|.|+.++++
T Consensus 142 ~p-iilV~NK~Dl~~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 191 (217)
T 2f7s_A 142 PD-IVLIGNKADLPDQREVNE-------RQARELADKYG------IPYFETSAATGQNVEKAVE 191 (217)
T ss_dssp CE-EEEEEECTTCGGGCCSCH-------HHHHHHHHHTT------CCEEEEBTTTTBTHHHHHH
T ss_pred CC-EEEEEECCccccccccCH-------HHHHHHHHHCC------CcEEEEECCCCCCHHHHHH
Confidence 66 8999999999431 1111 22233334433 4799999999999998755
No 115
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.71 E-value=4e-17 Score=149.57 Aligned_cols=152 Identities=18% Similarity=0.176 Sum_probs=98.3
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|+.. ..... ....+.... ...+..+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~--~~~~~-----------------------------~~~t~~~~~-~~~~~~~ 62 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQK--IFVDD-----------------------------YDPTIEDSY-LKHTEID 62 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHS--CCCSC-----------------------------CCTTCCEEE-EEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhC--CCCCC-----------------------------CCCCcccee-EEEEEeC
Confidence 456799999999999999999999532 11100 001111111 2233344
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHH----HHcCCCeEEEEEeeccC
Q 010318 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLA----KTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~----~~~~ip~~ivviNK~D~ 232 (513)
+ ..+.|+||||+++|...+...++.+|++|+|+|+++... |+ .....+..+ ...++| +++|+||+|+
T Consensus 63 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl 135 (183)
T 3kkq_A 63 NQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKAS---FE---HVDRFHQLILRVKDRESFP-MILVANKVDL 135 (183)
T ss_dssp TEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTSSCCC-EEEEEECTTC
T ss_pred CcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCc-EEEEEECCCc
Confidence 4 456779999999998888888899999999999987521 11 122222222 224678 8999999998
Q ss_pred CCC-CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecc-cccccccccc
Q 010318 233 HTV-NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRVD 282 (513)
Q Consensus 233 ~~~-~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~-~g~gi~~l~~ 282 (513)
... .... ++...+.+.++ ++++++||+ +|.|+.++++
T Consensus 136 ~~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~~v~~l~~ 174 (183)
T 3kkq_A 136 MHLRKVTR-------DQGKEMATKYN------IPYIETSAKDPPLNVDKTFH 174 (183)
T ss_dssp STTCCSCH-------HHHHHHHHHHT------CCEEEEBCSSSCBSHHHHHH
T ss_pred hhccCcCH-------HHHHHHHHHhC------CeEEEeccCCCCCCHHHHHH
Confidence 431 1111 22233344443 479999999 9999998644
No 116
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.71 E-value=4.5e-17 Score=146.51 Aligned_cols=150 Identities=19% Similarity=0.133 Sum_probs=81.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeE
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 161 (513)
.++|+++|++|+|||||+++|....... .....|.+.. ....+......
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~------------------------------~~~~~~~~~~-~~~~~~~~~~~ 50 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP------------------------------EAEAAGHTYD-RSIVVDGEEAS 50 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------------------------------------CEEE-EEEEETTEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC------------------------------CCCccccceE-EEEEECCEEEE
Confidence 4789999999999999999984211000 0011333332 11223333467
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCCC-
Q 010318 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTVN- 236 (513)
Q Consensus 162 i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~~- 236 (513)
+.++||||++.|.......++.+|++++|+|+++... |+ .....+..+.. .++| +++|+||+|+....
T Consensus 51 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~~~ 123 (166)
T 3q72_A 51 LMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGS---FE---KASELRVQLRRARQTDDVP-IILVGNKSDLVRSRE 123 (166)
T ss_dssp EEEEECC---------------CCEEEEEEETTCHHH---HH---HHHHHHHHHHHCC---CCC-EEEEEECTTCCSSCC
T ss_pred EEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEeccccccccc
Confidence 8999999999998888888899999999999986421 11 22233333333 3678 89999999984321
Q ss_pred chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
...+ +...+.... .++++++||++|.|+.++++
T Consensus 124 ~~~~-------~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 156 (166)
T 3q72_A 124 VSVD-------EGRACAVVF------DCKFIETSAALHHNVQALFE 156 (166)
T ss_dssp SCHH-------HHHHHHHHT------TCEEEECBGGGTBSHHHHHH
T ss_pred cCHH-------HHHHHHHHh------CCcEEEeccCCCCCHHHHHH
Confidence 1111 112222333 35899999999999998644
No 117
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.71 E-value=2.1e-17 Score=154.72 Aligned_cols=153 Identities=20% Similarity=0.162 Sum_probs=100.3
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+++|++|+|||||+++|+...- . ......++.+.....+..++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~t~~~~~~~~~~~~~~ 54 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTY--T-----------------------------NDYISTIGVDFKIKTVELDG 54 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCC--C-----------------------------TTCCCSSCCCEEEEEEEETT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC--C-----------------------------CCCCCcccceeEEEEEEECC
Confidence 4568999999999999999999953221 1 00112233333333444444
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCC
Q 010318 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 160 --~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~ 234 (513)
..+.|+||||+++|...+...++.+|++|+|+|++.... + ......+..+.. .++| +++|+||+|+..
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-iilv~nK~Dl~~ 127 (206)
T 2bcg_Y 55 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES---F---NGVKMWLQEIDRYATSTVL-KLLVGNKCDLKD 127 (206)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHH---H---HHHHHHHHHHHHHSCTTCE-EEEEEECTTCTT
T ss_pred EEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCC-EEEEEECCCCcc
Confidence 589999999999998888888899999999999987521 1 122223333333 2467 899999999943
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. .... ++...+....+ ++++++||++|.|+.+++.
T Consensus 128 ~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 128 KR--VVEY----DVAKEFADANK------MPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp TC--CSCH----HHHHHHHHHTT------CCEEECCTTTCTTHHHHHH
T ss_pred cc--ccCH----HHHHHHHHHcC------CeEEEEeCCCCCCHHHHHH
Confidence 21 1111 11222333333 4799999999999998755
No 118
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.71 E-value=7.6e-17 Score=147.71 Aligned_cols=153 Identities=19% Similarity=0.149 Sum_probs=98.1
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|+... .... . ....+.+. ...+...
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~------------------------~---~~t~~~~~---~~~~~~~ 62 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDE--FVED------------------------Y---EPTKADSY---RKKVVLD 62 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSC--CCCS------------------------C---CTTCCEEE---EEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCC--CCCc------------------------C---CCccceEE---EEEEEEC
Confidence 4567999999999999999999995322 1100 0 00011111 1223334
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccC
Q 010318 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 232 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~ 232 (513)
+ ..+.|+||||+.+|...+...++.+|++|+|+|+++... ++ .....+..+.. .++| +++|+||+|+
T Consensus 63 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 135 (187)
T 2a9k_A 63 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---FA---ATADFREQILRVKEDENVP-FLLVGNKSDL 135 (187)
T ss_dssp TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHCCTTCC-EEEEEECGGG
T ss_pred CEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccc
Confidence 3 579999999999999988888999999999999986421 11 12222222222 2678 9999999998
Q ss_pred CCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.... +... +++..+++..+ ++++++||++|.|+.++++
T Consensus 136 ~~~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 173 (187)
T 2a9k_A 136 EDKR--QVSV----EEAKNRAEQWN------VNYVETSAKTRANVDKVFF 173 (187)
T ss_dssp GGGC--CSCH----HHHHHHHHHTT------CEEEECCTTTCTTHHHHHH
T ss_pred cccC--ccCH----HHHHHHHHHcC------CeEEEeCCCCCCCHHHHHH
Confidence 4321 1111 22333344443 4799999999999998654
No 119
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=149.62 Aligned_cols=153 Identities=19% Similarity=0.148 Sum_probs=99.8
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|+... +.... ....+.+. ...+..+
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~---------------------------~~t~~~~~---~~~~~~~ 58 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDE--FVEDY---------------------------EPTKADSY---RKKVVLD 58 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSC--CCTTC---------------------------CTTCCEEE---EEEEEET
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCC--CCCCC---------------------------CCccceEE---EEEEEEC
Confidence 4567999999999999999999995322 11000 00011111 1223334
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccC
Q 010318 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 232 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~ 232 (513)
+ ..+.|+||||+++|...+...++.+|++|+|+|++.... +. .....+..+.. .++| +++|+||+|+
T Consensus 59 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl 131 (206)
T 2bov_A 59 GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES---FA---ATADFREQILRVKEDENVP-FLLVGNKSDL 131 (206)
T ss_dssp TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHTTCSCCC-EEEEEECTTC
T ss_pred CEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEeccCc
Confidence 4 579999999999999988888999999999999987421 11 12222223332 2678 9999999999
Q ss_pred CCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... .+... +++..++...+ ++++++||++|.|+.++++
T Consensus 132 ~~~--~~~~~----~~~~~~~~~~~------~~~~~~Sa~~g~gi~~l~~ 169 (206)
T 2bov_A 132 EDK--RQVSV----EEAKNRAEQWN------VNYVETSAKTRANVDKVFF 169 (206)
T ss_dssp GGG--CCSCH----HHHHHHHHHHT------CEEEEECTTTCTTHHHHHH
T ss_pred ccc--ccccH----HHHHHHHHHhC------CeEEEEeCCCCCCHHHHHH
Confidence 432 11111 22233344443 4799999999999999755
No 120
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=154.44 Aligned_cols=153 Identities=20% Similarity=0.214 Sum_probs=97.8
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|++|+|||||+++|+..... . .....++.+.....+..++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~--~-----------------------------~~~~t~~~~~~~~~~~~~~ 71 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFK--Q-----------------------------DSNHTIGVEFGSRVVNVGG 71 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------------------------------------CCEEEEEEEETT
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC--c-----------------------------cCCCcccceeEEEEEEECC
Confidence 46799999999999999999999532110 0 0012222222233344444
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCC
Q 010318 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 160 --~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~ 234 (513)
..+.|+||||+++|...+...++.+|++|+|+|++.... ++ .....+..+.. .++| +++|+||+|+..
T Consensus 72 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 144 (200)
T 2o52_A 72 KTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET---YN---SLAAWLTDARTLASPNIV-VILCGNKKDLDP 144 (200)
T ss_dssp EEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHTCTTCE-EEEEEECGGGGG
T ss_pred eeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECCCccc
Confidence 689999999999887777777889999999999987531 11 22233333333 3677 999999999842
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. .... .+...+.+.. .++++++||++|.|+.++++
T Consensus 145 ~~--~v~~----~~~~~~~~~~------~~~~~~~SA~~g~gi~~l~~ 180 (200)
T 2o52_A 145 ER--EVTF----LEASRFAQEN------ELMFLETSALTGENVEEAFL 180 (200)
T ss_dssp GC--CSCH----HHHHHHHHHT------TCEEEEECTTTCTTHHHHHH
T ss_pred cc--ccCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 11 1111 1122233333 35899999999999999754
No 121
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.71 E-value=1.8e-17 Score=152.98 Aligned_cols=153 Identities=20% Similarity=0.244 Sum_probs=99.7
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
++.++|+++|++|+|||||+++|.. +.... ...|+......+..++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~--~~~~~--------------------------------~~~t~~~~~~~~~~~~ 65 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL--GDVVT--------------------------------TVPTVGVNLETLQYKN 65 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC--SCCEE--------------------------------ECSSTTCCEEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc--CCCCC--------------------------------cCCCCceEEEEEEECC
Confidence 5678999999999999999999832 11100 0011112223456678
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 235 (513)
..+.|+||||+++|...+...++.+|++|+|+|+++... + ....+.+..+.. .++| +++|+||+|+...
T Consensus 66 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 138 (189)
T 2x77_A 66 ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDR---M---GVAKHELYALLDEDELRKSL-LLIFANKQDLPDA 138 (189)
T ss_dssp EEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTT---H---HHHHHHHHHHHTCSTTTTCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHH---H---HHHHHHHHHHHhhhhcCCCe-EEEEEECCCCcCC
Confidence 999999999999987777777889999999999987521 1 122222322222 3677 9999999999432
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. . .+++.+.+.. .... ...++++++||++|.|+.++++
T Consensus 139 ~-~---~~~~~~~~~~----~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 176 (189)
T 2x77_A 139 A-S---EAEIAEQLGV----SSIM-NRTWTIVKSSSKTGDGLVEGMD 176 (189)
T ss_dssp C-C---HHHHHHHTTG----GGCC-SSCEEEEECCTTTCTTHHHHHH
T ss_pred C-C---HHHHHHHhCh----hhcc-CCceEEEEccCCCccCHHHHHH
Confidence 1 1 1223332221 1111 1246899999999999998644
No 122
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.71 E-value=2.7e-17 Score=151.35 Aligned_cols=149 Identities=23% Similarity=0.264 Sum_probs=102.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|++|+|||||+++|..... ......++|.+.....+...+
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~-------------------------------~~~~~~~~t~~~~~~~~~~~~ 53 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENV-------------------------------YIGNWPGVTVEKKEGEFEYNG 53 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCE-------------------------------EEEECTTSCCEEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc-------------------------------cccCCCCeeccceEEEEEeCC
Confidence 4568999999999999999999943210 011225667666667777888
Q ss_pred eEEEEEeCCCCcchH------HHHHHhh--hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 160 TRFTILDAPGHKSYV------PNMISGA--SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 160 ~~i~liDtPGh~~f~------~~~~~~~--~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
..+.|+||||+.+|. ......+ ..+|++++|+|+... .+....+..+...+.| ++++.||+|
T Consensus 54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---------~~~~~~~~~~~~~~~p-iilv~nK~D 123 (188)
T 2wjg_A 54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---------ERNLYLTLQLMEMGAN-LLLALNKMD 123 (188)
T ss_dssp EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGGH---------HHHHHHHHHHHTTTCC-EEEEEECHH
T ss_pred cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchhH---------HHHHHHHHHHHhcCCC-EEEEEEhhh
Confidence 999999999998873 1122222 359999999998752 2445555566667888 899999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+.... .+...+..+.+.++ ++++++||++|.|+.++++
T Consensus 124 l~~~~-------~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 161 (188)
T 2wjg_A 124 LAKSL-------GIEIDVDKLEKILG------VKVVPLSAAKKMGIEELKK 161 (188)
T ss_dssp HHHHT-------TCCCCHHHHHHHHT------SCEEECBGGGTBSHHHHHH
T ss_pred ccccc-------cchHHHHHHHHHhC------CCeEEEEecCCCCHHHHHH
Confidence 83211 01122333333333 4799999999999998644
No 123
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.71 E-value=2e-17 Score=156.85 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=106.0
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
...+.++|+++|++|+|||||+++|+...-. .......|.+.......+..
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~-----------------------------~~~~~t~~~~~~~~~~~~~~ 61 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFE-----------------------------KKYVATLGVEVHPLVFHTNR 61 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHT-----------------------------CEEETTTTEEEEEEEEEETT
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCC-----------------------------CCCCCccceeEEEEEEEECC
Confidence 3456799999999999999999996422100 00111256666665555555
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCC
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~ 235 (513)
....+.|+||||++.|...+...++.+|++|+|+|++.... ++ .....+..+... ++| +|+|+||+|+...
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT---YK---NVPNWHRDLVRVCENIP-IVLCGNKVDIKDR 134 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHH---HH---THHHHHHHHHHHSTTCC-EEEEEECTTSSSC
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhCCCCC-EEEEEECCccccc
Confidence 66789999999999998777778889999999999997532 11 222333333332 778 9999999999432
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. ..+...+....+ ++++++||++|.|+.+++.
T Consensus 135 ~~--------~~~~~~~~~~~~------~~~~~~Sa~~~~gi~~l~~ 167 (221)
T 3gj0_A 135 KV--------KAKSIVFHRKKN------LQYYDISAKSNYNFEKPFL 167 (221)
T ss_dssp SS--------CGGGCCHHHHHT------CEEEECBGGGTBTTTHHHH
T ss_pred cc--------cHHHHHHHHHcC------CEEEEEeCCCCCCHHHHHH
Confidence 21 112233334333 5799999999999998754
No 124
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=2.4e-17 Score=150.97 Aligned_cols=153 Identities=17% Similarity=0.251 Sum_probs=96.8
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
++.++|+++|++|+|||||+++|+. +.... ...|+......+..++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~--~~~~~--------------------------------~~~t~~~~~~~~~~~~ 61 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI--GEVVT--------------------------------TKPTIGFNVETLSYKN 61 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC--SEEEE--------------------------------ECSSTTCCEEEEEETT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc--CCcCc--------------------------------cCCcCccceEEEEECC
Confidence 5679999999999999999999832 11000 0111112223456678
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~ 235 (513)
..+.|+||||+++|...+...+..+|++|+|+|++.... + ....+.+..+. ..++| +++|+||+|+...
T Consensus 62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 134 (183)
T 1moz_A 62 LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDR---M---STASKELHLMLQEEELQDAA-LLVFANKQDQPGA 134 (183)
T ss_dssp EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTT---H---HHHHHHHHHHTTSSTTSSCE-EEEEEECTTSTTC
T ss_pred EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH---H---HHHHHHHHHHHcChhhCCCe-EEEEEECCCCCCC
Confidence 999999999999998878888899999999999987521 1 12233333332 24577 9999999999432
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. . .+++.+. +...... ...++++++||++|.|+.++++
T Consensus 135 ~-~---~~~i~~~----~~~~~~~-~~~~~~~~~Sa~~~~gi~~l~~ 172 (183)
T 1moz_A 135 L-S---ASEVSKE----LNLVELK-DRSWSIVASSAIKGEGITEGLD 172 (183)
T ss_dssp C-C---HHHHHHH----TTTTTCC-SSCEEEEEEBGGGTBTHHHHHH
T ss_pred C-C---HHHHHHH----hCccccc-CCceEEEEccCCCCcCHHHHHH
Confidence 1 1 1222222 2211111 1246899999999999998644
No 125
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.70 E-value=7e-17 Score=161.42 Aligned_cols=161 Identities=13% Similarity=0.194 Sum_probs=106.1
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe-CCe
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET-ETT 160 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~ 160 (513)
..+|+++|.+|+|||||+++|+...... .....|.|++.....+.. ++.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~------------------------------~~~~~~~Ti~~~~~~~~~~~~~ 52 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAF------------------------------DTRRLGATIDVEHSHLRFLGNM 52 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTG------------------------------GGGGCCCCCSEEEEEEEETTTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCc------------------------------cccCcCCccceEEEEEEeCCce
Confidence 4789999999999999999984322111 112366777766666664 578
Q ss_pred EEEEEeCCCCcchHH-----HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCC
Q 010318 161 RFTILDAPGHKSYVP-----NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDH 233 (513)
Q Consensus 161 ~i~liDtPGh~~f~~-----~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~ 233 (513)
.+.|+||||+++|.. .....++.+|++|+|+|+++... ++.-....+.+..+... ++| +++|+||+|+.
T Consensus 53 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s---~~~l~~~~~~l~~l~~~~~~~p-iilv~NK~Dl~ 128 (307)
T 3r7w_A 53 TLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEV---LKDIEIFAKALKQLRKYSPDAK-IFVLLHKMDLV 128 (307)
T ss_dssp EEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCH---HHHHHHHHHHHHHHHHHCTTCE-EEEEEECGGGS
T ss_pred EEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhh---HHHHHHHHHHHHHHHHhCCCCe-EEEEEeccccc
Confidence 999999999999943 33444578999999999987631 00000001112222222 678 99999999994
Q ss_pred CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
..+.....++....++..+.+.+|+. .++++++||++ .|+.+.
T Consensus 129 ~~~~r~~~~~v~~~~~~~~~~~~g~~---~~~~~~tSa~~-~~i~e~ 171 (307)
T 3r7w_A 129 QLDKREELFQIMMKNLSETSSEFGFP---NLIGFPTSIWD-ESLYKA 171 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTCC---SCEEEECCTTS-SHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHcCCC---CeEEEEeeecC-ChHHHH
Confidence 32122222334556677777777753 46899999999 677664
No 126
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.70 E-value=2.4e-17 Score=173.81 Aligned_cols=150 Identities=21% Similarity=0.269 Sum_probs=103.7
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++.++|+++|++|+|||||+|+|++..-.+ .....|+|.+.....+.+.
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~------------------------------v~~~~g~t~~~~~~~~~~~ 69 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISI------------------------------VEDTPGVTRDRIYSSAEWL 69 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------------------------------------CEEEECTTC
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcc------------------------------cCCCCCcceeEEEEEEEEC
Confidence 4567899999999999999999995432111 1112688888888888888
Q ss_pred CeEEEEEeCCC--------CcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010318 159 TTRFTILDAPG--------HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 230 (513)
Q Consensus 159 ~~~i~liDtPG--------h~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 230 (513)
+..+.|+|||| ++.|...+..++..+|++|+|+|+..+.. ....+.+.+++..+.| +|+|+||+
T Consensus 70 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~-------~~d~~l~~~l~~~~~p-vilV~NK~ 141 (456)
T 4dcu_A 70 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVT-------AADEEVAKILYRTKKP-VVLAVNKL 141 (456)
T ss_dssp SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSC-------HHHHHHHHHHTTCCSC-EEEEEECC
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCC-------hHHHHHHHHHHHcCCC-EEEEEECc
Confidence 99999999999 77778888888899999999999998843 5677777888888898 99999999
Q ss_pred cCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 231 DDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 231 D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+... . ..+.. +..+++. .++++||++|.|+.++++
T Consensus 142 D~~~~--~--------~~~~e-~~~lg~~-----~~~~iSA~~g~gv~~L~~ 177 (456)
T 4dcu_A 142 DNTEM--R--------ANIYD-FYSLGFG-----EPYPISGTHGLGLGDLLD 177 (456)
T ss_dssp -------------------CC-SGGGSSS-----SEEECCTTTCTTHHHHHH
T ss_pred cchhh--h--------hhHHH-HHHcCCC-----ceEEeecccccchHHHHH
Confidence 98311 0 11111 2234443 467999999999998643
No 127
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.70 E-value=4.1e-17 Score=149.24 Aligned_cols=152 Identities=16% Similarity=0.107 Sum_probs=95.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|++|+|||||+++|+... .... .....+.+. ...+..++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~--~~~~---------------------------~~~t~~~~~---~~~~~~~~ 51 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQ--FVDS---------------------------YDPTIENTF---TKLITVNG 51 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSS--CCSC---------------------------CCTTCCEEE---EEEEEETT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCC--CCCC---------------------------CCCCccccE---EEEEEECC
Confidence 457899999999999999999995321 1100 000122222 22333444
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH----HHHHHcCCCeEEEEEeeccCC
Q 010318 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV----MLAKTLGVTKLLLVVNKMDDH 233 (513)
Q Consensus 160 --~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l----~~~~~~~ip~~ivviNK~D~~ 233 (513)
..+.|+||||+++|.......++.+|++|+|+|+++... ++ .....+ ..+...++| +++|+||+|+.
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 124 (181)
T 3t5g_A 52 QEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKS---FE---VIKVIHGKLLDMVGKVQIP-IMLVGNKKDLH 124 (181)
T ss_dssp EEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHC----CC-EEEEEECTTCT
T ss_pred EEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccch
Confidence 677999999999997767777889999999999987421 11 111111 122223678 99999999984
Q ss_pred CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... ... .+++..+.+..+ ++++++||++|.|+.++++
T Consensus 125 ~~~--~~~----~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 125 MER--VIS----YEEGKALAESWN------AAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp TTC--CSC----HHHHHHHHHHTT------CEEEECCTTSHHHHHHHHH
T ss_pred hcc--eec----HHHHHHHHHHhC------CcEEEEecCCCCCHHHHHH
Confidence 221 111 122233344443 4799999999999998754
No 128
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.70 E-value=4.7e-17 Score=150.23 Aligned_cols=151 Identities=13% Similarity=0.123 Sum_probs=95.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++.++|+++|++|+|||||+++|+...- .. .....++.+.....+..+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~-----------------------------~~~~t~~~~~~~~~~~~~ 65 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRF--PD-----------------------------RTEATIGVDFRERAVDID 65 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSC--CS-----------------------------SCCCCCSCCEEEEEEEET
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCC--CC-----------------------------CCCCCcceEEEEEEEEEC
Confidence 45779999999999999999999953211 10 001222222222334444
Q ss_pred C--eEEEEEeCCCCcchH-HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeecc
Q 010318 159 T--TRFTILDAPGHKSYV-PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMD 231 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f~-~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D 231 (513)
+ ..+.|+||||+++|. ..+...++.+|++|+|+|++.... ++ .....+..+.. .++| +++|+||+|
T Consensus 66 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~D 138 (189)
T 1z06_A 66 GERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMAS---FH---SLPAWIEECKQHLLANDIP-RILVGNKCD 138 (189)
T ss_dssp TEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHH---HH---THHHHHHHHHHHCCCSCCC-EEEEEECTT
T ss_pred CEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 4 689999999999997 666677889999999999987421 11 22222222222 3677 999999999
Q ss_pred CCCCC-chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccc---cccccc
Q 010318 232 DHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMG---LNMKTR 280 (513)
Q Consensus 232 ~~~~~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g---~gi~~l 280 (513)
+.... ... ++...+....+ ++++++||++| .|+.++
T Consensus 139 l~~~~~v~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~~~~i~~l 178 (189)
T 1z06_A 139 LRSAIQVPT-------DLAQKFADTHS------MPLFETSAKNPNDNDHVEAI 178 (189)
T ss_dssp CGGGCCSCH-------HHHHHHHHHTT------CCEEECCSSSGGGGSCHHHH
T ss_pred ccccceeCH-------HHHHHHHHHcC------CEEEEEeCCcCCcccCHHHH
Confidence 84221 111 11222333333 47999999999 777664
No 129
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.70 E-value=2.7e-17 Score=166.02 Aligned_cols=154 Identities=18% Similarity=0.227 Sum_probs=98.8
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++.++|+++|++|+|||||+++|+. +.+.. ...|+......+...
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~--~~~~~--------------------------------~~pT~~~~~~~~~~~ 207 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKL--GEIVT--------------------------------TIPTIGFNVETVEYK 207 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCS--SCCEE--------------------------------EEEETTEEEEEEEET
T ss_pred ccCcceEEEECCCCccHHHHHHHHhC--CCCCC--------------------------------cccccceEEEEEecC
Confidence 34668999999999999999999832 11100 012444445667778
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH-HHHHHc---CCCeEEEEEeeccCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV-MLAKTL---GVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l-~~~~~~---~ip~~ivviNK~D~~~ 234 (513)
+..+.|+||||++.|...+...++.+|++|+|+|+++... |. ...+.+ .++... ++| +|+|+||+|+..
T Consensus 208 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-iilV~NK~Dl~~ 280 (329)
T 3o47_A 208 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER---VN---EAREELMRMLAEDELRDAV-LLVFANKQDLPN 280 (329)
T ss_dssp TEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSS---HH---HHHHHHHHHHTCGGGTTCE-EEEEEECTTSTT
T ss_pred cEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHH---HH---HHHHHHHHHHhhhccCCCe-EEEEEECccCCc
Confidence 8999999999999998888888999999999999986421 11 122222 222222 677 999999999953
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. . .+++...+.. .... ...++++++||++|.|+.++++
T Consensus 281 ~~-~---~~~i~~~~~~----~~~~-~~~~~~~~vSAk~g~gi~el~~ 319 (329)
T 3o47_A 281 AM-N---AAEITDKLGL----HSLR-HRNWYIQATCATSGDGLYEGLD 319 (329)
T ss_dssp CC-C---HHHHHHHHTC----TTCC-SSCEEEEECBTTTTBTHHHHHH
T ss_pred cc-C---HHHHHHHhch----hhhh-cCCCEEEEEECCCCcCHHHHHH
Confidence 32 1 1223222211 1111 2357899999999999998644
No 130
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=4.3e-17 Score=151.01 Aligned_cols=159 Identities=16% Similarity=0.111 Sum_probs=100.1
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|++|+|||||+++|+.. ...... . ...+... ...+..++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~--~~~~~~------------------------~---~t~~~~~---~~~~~~~~ 63 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYAND--AFPEEY------------------------V---PTVFDHY---AVSVTVGG 63 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHS--SCCCSC------------------------C---CSSCCCE---EEEEESSS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC--CCCCCC------------------------C---Cccccee---EEEEEECC
Confidence 46689999999999999999999533 111000 0 0011111 12233333
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCCC
Q 010318 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 234 (513)
Q Consensus 160 --~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~ip~~ivviNK~D~~~ 234 (513)
..+.|+||||+++|...+...++.+|++|+|+|++.... |+ ... ..+..+... ++| +++|+||+|+..
T Consensus 64 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~ 136 (194)
T 2atx_A 64 KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPAS---FQ---NVKEEWVPELKEYAPNVP-FLLIGTQIDLRD 136 (194)
T ss_dssp CEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHSTTCC-EEEEEECTTSTT
T ss_pred EEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhcc
Confidence 678999999999998888888899999999999987521 10 122 233444444 788 999999999943
Q ss_pred CCchHHHHH------HHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~------~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.......+. -..++...+.+.+++ .+++++||++|.|+.++++
T Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 185 (194)
T 2atx_A 137 DPKTLARLNDMKEKPICVEQGQKLAKEIGA-----CCYVECSALTQKGLKTVFD 185 (194)
T ss_dssp CHHHHHHHTTTTCCCCCHHHHHHHHHHHTC-----SCEEECCTTTCTTHHHHHH
T ss_pred cccchhhcccccCcccCHHHHHHHHHHcCC-----cEEEEeeCCCCCCHHHHHH
Confidence 210000000 001223334444443 2799999999999998643
No 131
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.70 E-value=9.2e-17 Score=169.35 Aligned_cols=150 Identities=19% Similarity=0.213 Sum_probs=88.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
..++|+++|++|+|||||+|+|+.....+. ....|.|.+.....+..++.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v------------------------------s~~~gtT~d~~~~~i~~~g~ 281 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIV------------------------------SHMPGTTRDYIEECFIHDKT 281 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------------------------------------CEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccc------------------------------CCCCCceEEEEEEEEEECCe
Confidence 457899999999999999999954322111 11267888887788888999
Q ss_pred EEEEEeCCCCcchHH--------HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-CCCeEEEEEeecc
Q 010318 161 RFTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMD 231 (513)
Q Consensus 161 ~i~liDtPGh~~f~~--------~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~-~ip~~ivviNK~D 231 (513)
.+.|+||||++++.. .+...+..+|++|+|+|++++... .+..+...++..+ ++| +|+|+||+|
T Consensus 282 ~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~------~~~~~~~~~l~~l~~~p-iIvV~NK~D 354 (476)
T 3gee_A 282 MFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLD------DELTEIRELKAAHPAAK-FLTVANKLD 354 (476)
T ss_dssp EEEEEC--------------------CCCSSCSEEEEEEETTTCSSG------GGHHHHHHHHHHCTTSE-EEEEEECTT
T ss_pred EEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcch------hhhHHHHHHHHhcCCCC-EEEEEECcC
Confidence 999999999987643 233456899999999999987431 1222344444444 566 999999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+.... .... ++ +...++ .+++++||++|.|++++++
T Consensus 355 l~~~~--~~~~----~~----l~~~~~-----~~~i~vSAktg~GI~eL~~ 390 (476)
T 3gee_A 355 RAANA--DALI----RA----IADGTG-----TEVIGISALNGDGIDTLKQ 390 (476)
T ss_dssp SCTTT--HHHH----HH----HHHHHT-----SCEEECBTTTTBSHHHHHH
T ss_pred CCCcc--chhH----HH----HHhcCC-----CceEEEEECCCCCHHHHHH
Confidence 94332 1111 11 222222 3799999999999998654
No 132
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.6e-17 Score=154.77 Aligned_cols=153 Identities=19% Similarity=0.180 Sum_probs=96.8
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+++|++++|||||+++|+....... ....++.+.....+..++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~-------------------------------~~~t~~~~~~~~~~~~~~ 59 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD-------------------------------SKSTIGVEFATRTLEIEG 59 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-------------------------------------CCSEEEEEEEETT
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCC-------------------------------CCCcccceeEEEEEEECC
Confidence 4568999999999999999999954221100 001122222223344454
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCCC
Q 010318 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDHT 234 (513)
Q Consensus 160 --~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~~ 234 (513)
..+.|+||||+++|...+...++.+|++|+|+|++.... |+ ...+.+..+... ++| ++||+||+|+..
T Consensus 60 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s---~~---~~~~~l~~i~~~~~~~~p-iilv~nK~Dl~~ 132 (223)
T 3cpj_B 60 KRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSS---YE---NCNHWLSELRENADDNVA-VGLIGNKSDLAH 132 (223)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHH---HH---HHHHHHHHHHHHCC--CE-EEEEECCGGGGG
T ss_pred EEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhCCCCCe-EEEEEECccccc
Confidence 689999999999998888888899999999999987531 11 222333344433 677 899999999842
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. .... ++...+.... .++++++||++|.|+.++++
T Consensus 133 ~~--~v~~----~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 133 LR--AVPT----EESKTFAQEN------QLLFTETSALNSENVDKAFE 168 (223)
T ss_dssp GC--CSCH----HHHHHHHHHT------TCEEEECCCC-CCCHHHHHH
T ss_pred cc--ccCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 11 1011 1222333333 35899999999999998644
No 133
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.69 E-value=2.8e-17 Score=153.55 Aligned_cols=160 Identities=13% Similarity=0.097 Sum_probs=99.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+++|++|+|||||+++|...... .. ....++.... ..+..++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~-----------------------------~~~t~~~~~~-~~~~~~~ 70 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFP--EV-----------------------------YVPTVFENYI-ADIEVDG 70 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCC--SS-----------------------------CCCSSCCCCE-EEEEETT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCC--cc-----------------------------cCCcccceEE-EEEEECC
Confidence 35689999999999999999999532211 00 0011111111 1123333
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCC
Q 010318 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 --~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~ 235 (513)
..+.|+||||+++|...+...++.+|++|+|+|++.... ++ ......+..+... ++| +++|+||+|+...
T Consensus 71 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 144 (201)
T 2gco_A 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDS---LE--NIPEKWTPEVKHFCPNVP-IILVGNKKDLRQD 144 (201)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH--HHHHTHHHHHHHHSTTCC-EEEEEECGGGTTC
T ss_pred EEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHHhCCCCC-EEEEEecHHhhcC
Confidence 578999999999998888788899999999999987421 11 1112333444444 788 9999999999432
Q ss_pred CchHHHHHH------HHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~------i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
....+.+.+ ..++...+...+++ .+++++||++|.|+.++++
T Consensus 145 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~~l~~ 192 (201)
T 2gco_A 145 EHTRRELAKMKQEPVRSEEGRDMANRISA-----FGYLECSAKTKEGVREVFE 192 (201)
T ss_dssp HHHHHHHHTTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHHH
T ss_pred ccchhhhcccccCcCCHHHHHHHHHhCCC-----cEEEEeeCCCCCCHHHHHH
Confidence 111111110 01122333344432 3799999999999998644
No 134
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.69 E-value=3.1e-17 Score=154.98 Aligned_cols=154 Identities=15% Similarity=0.127 Sum_probs=96.0
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe-
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 157 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~- 157 (513)
....++|+++|++|+|||||+++|+... .... .....|.+... ..+..
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~--~~~~---------------------------~~~t~~~~~~~--~~~~~~ 56 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGR--FEKN---------------------------YNATVGAVNHP--VTFLDD 56 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCS--TTCE---------------------------EETTTTEEEEE--EEEEBT
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCC--CCCC---------------------------CCCccceeeEE--EEEEeC
Confidence 4567999999999999999999984211 0000 00012222221 11222
Q ss_pred CC--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccC
Q 010318 158 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDD 232 (513)
Q Consensus 158 ~~--~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~ 232 (513)
.+ ..+.|+||||+++|.......+..+|++|+|+|++++... + ...+.+..+.. .++| +++|+||+|+
T Consensus 57 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~---~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 129 (218)
T 4djt_A 57 QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITC---Q---NLARWVKEFQAVVGNEAP-IVVCANKIDI 129 (218)
T ss_dssp TSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHH---H---THHHHHHHHHHHHCSSSC-EEEEEECTTC
T ss_pred CCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHH---H---HHHHHHHHHHHhcCCCCC-EEEEEECCCC
Confidence 22 6799999999999987777778899999999999986321 1 12222233333 3678 9999999998
Q ss_pred CCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... .. ........+.... .++++++||++|.|+.++++
T Consensus 130 ~~~--~~----~~~~~~~~~~~~~------~~~~~~~Sa~~g~gv~~l~~ 167 (218)
T 4djt_A 130 KNR--QK----ISKKLVMEVLKGK------NYEYFEISAKTAHNFGLPFL 167 (218)
T ss_dssp C----------CCHHHHHHHTTTC------CCEEEEEBTTTTBTTTHHHH
T ss_pred ccc--cc----cCHHHHHHHHHHc------CCcEEEEecCCCCCHHHHHH
Confidence 321 11 1112222233333 35899999999999999754
No 135
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.69 E-value=1.6e-16 Score=143.24 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=87.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC--C
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE--T 159 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~ 159 (513)
.++|+++|++|+|||||+++|......... ....+.+.....+..+ .
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 50 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH-------------------------------EMENSEDTYERRIMVDKEE 50 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------------------------------------CEEEEEEEETTEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc-------------------------------cCCCcCCeeeEEEEECCeE
Confidence 478999999999999999999532211000 0111222222233333 3
Q ss_pred eEEEEEeCCCCcchHH-HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc----CCCeEEEEEeeccCCC
Q 010318 160 TRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL----GVTKLLLVVNKMDDHT 234 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~-~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~----~ip~~ivviNK~D~~~ 234 (513)
..+.|+||||+++|.. .....++.+|++|+|+|++.... ++ ...+.+..+... ++| +++|+||+|+..
T Consensus 51 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 123 (169)
T 3q85_A 51 VTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRS---FS---KVPETLLRLRAGRPHHDLP-VILVGNKSDLAR 123 (169)
T ss_dssp EEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSTTSCCC-EEEEEECTTCGG
T ss_pred EEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHH---HH---HHHHHHHHHHhcccCCCCC-EEEEeeCcchhh
Confidence 6788999999999866 34444678999999999987421 11 223333333332 678 999999999842
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. .... ++...+.+..+ ++++++||++|.|+.++++
T Consensus 124 ~~--~~~~----~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 159 (169)
T 3q85_A 124 SR--EVSL----EEGRHLAGTLS------CKHIETSAALHHNTRELFE 159 (169)
T ss_dssp GC--CSCH----HHHHHHHHHTT------CEEEECBTTTTBSHHHHHH
T ss_pred cc--cCCH----HHHHHHHHHcC------CcEEEecCccCCCHHHHHH
Confidence 11 1111 12223333333 4899999999999998644
No 136
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.69 E-value=7.8e-17 Score=150.44 Aligned_cols=155 Identities=17% Similarity=0.072 Sum_probs=96.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|.+|+|||||+++|+...-. .. . ....+.+. .....+...
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~------------------------~---~~t~~~~~-~~~~~~~~~ 70 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFS--EG------------------------Y---DPTVENTY-SKIVTLGKD 70 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCC--SC------------------------C---CCCSEEEE-EEEEC----
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCC--CC------------------------C---CCccceEE-EEEEEECCE
Confidence 456899999999999999999999532211 00 0 00011111 222233445
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~ 234 (513)
...+.|+||||+++|...+...++.+|++|+|+|++.... ++ .....+..+. ..++| +|+|+||+|+..
T Consensus 71 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 143 (201)
T 3oes_A 71 EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHS---FQ---VIESLYQKLHEGHGKTRVP-VVLVGNKADLSP 143 (201)
T ss_dssp CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHH---HH---HHHHHHHHHHC-----CCC-EEEEEECTTCGG
T ss_pred EEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECccCcc
Confidence 6789999999999998888888899999999999986421 11 1222222222 23678 999999999842
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. .... .+...+.+..+ ++++++||++|.|+.++++
T Consensus 144 ~~--~v~~----~~~~~~~~~~~------~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 144 ER--EVQA----VEGKKLAESWG------ATFMESSARENQLTQGIFT 179 (201)
T ss_dssp GC--CSCH----HHHHHHHHHHT------CEEEECCTTCHHHHHHHHH
T ss_pred cc--ccCH----HHHHHHHHHhC------CeEEEEeCCCCCCHHHHHH
Confidence 21 1011 11222333333 4899999999999999754
No 137
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.69 E-value=9.5e-17 Score=148.81 Aligned_cols=157 Identities=12% Similarity=0.105 Sum_probs=99.2
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++.++|+++|++|+|||||+++|+... ..... ....+.+.. ..+..+
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~--~~~~~---------------------------~~t~~~~~~---~~~~~~ 67 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGE--IPTAY---------------------------VPTVFENFS---HVMKYK 67 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSC--CCSSC---------------------------CCCSEEEEE---EEEEET
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCC--CCCcc---------------------------CCeeeeeeE---EEEEEC
Confidence 4567999999999999999999995322 11000 000111111 123333
Q ss_pred --CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCC
Q 010318 159 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 --~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~ 234 (513)
...+.|+||||+++|...+...++.+|++|+|+|+++... +. ......+..+... ++| +++|+||+|+..
T Consensus 68 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 141 (194)
T 3reg_A 68 NEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTS---FD--NISTKWEPEIKHYIDTAK-TVLVGLKVDLRK 141 (194)
T ss_dssp TEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH--HHHHTHHHHHHHHCTTSE-EEEEEECGGGCC
T ss_pred CEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHH---HH--HHHHHHHHHHHHhCCCCC-EEEEEEChhhcc
Confidence 3567999999999998888888899999999999987521 11 0012233333333 577 999999999843
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.+... ...+++..+.+.+++. .++++||++|.|+.++++
T Consensus 142 ~~~~~----~~~~~~~~~~~~~~~~-----~~~~~Sa~~~~gi~~l~~ 180 (194)
T 3reg_A 142 DGSDD----VTKQEGDDLCQKLGCV-----AYIEASSVAKIGLNEVFE 180 (194)
T ss_dssp TTTTC----CCHHHHHHHHHHHTCS-----CEEECBTTTTBSHHHHHH
T ss_pred CCCCc----ccHHHHHHHHHhcCCC-----EEEEeecCCCCCHHHHHH
Confidence 21111 1122333444555432 499999999999998644
No 138
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=8.6e-17 Score=150.97 Aligned_cols=160 Identities=14% Similarity=0.102 Sum_probs=98.1
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+++|++|+|||||+++|+...- .... ....+.+.. ..+..++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~---------------------------~~t~~~~~~---~~~~~~~ 70 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEF--PEVY---------------------------VPTVFENYV---ADIEVDG 70 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSC--C----------------------------------CCEEE---EEEEETT
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCC--CCcC---------------------------CCcccceEE---EEEEECC
Confidence 4568999999999999999999954221 1000 000111111 1133343
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCC
Q 010318 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 --~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~ 235 (513)
..+.|+||||+++|...+...+..+|++|+|+|++.... ++ ......+..+... ++| +++|+||+|+...
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~--~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~ 144 (207)
T 2fv8_A 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDS---LE--NIPEKWVPEVKHFCPNVP-IILVANKKDLRSD 144 (207)
T ss_dssp EEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHH---HH--HHHHTHHHHHHHHSTTCC-EEEEEECGGGGGC
T ss_pred EEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHH---HH--HHHHHHHHHHHHhCCCCC-EEEEEEchhhhcc
Confidence 578999999999998877778899999999999987421 10 1112333444444 788 9999999999432
Q ss_pred CchHHHHHHH------HhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEI------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i------~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
....+.+... .++...+....++ .+++++||++|.|+.++++
T Consensus 145 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~el~~ 192 (207)
T 2fv8_A 145 EHVRTELARMKQEPVRTDDGRAMAVRIQA-----YDYLECSAKTKEGVREVFE 192 (207)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHHH
T ss_pred ccchhhhhhcccCCCCHHHHHHHHHhcCC-----CEEEEeeCCCCCCHHHHHH
Confidence 1111111110 0111222233332 3799999999999998644
No 139
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.69 E-value=1.6e-16 Score=151.54 Aligned_cols=160 Identities=14% Similarity=0.202 Sum_probs=98.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|.+|+|||||+++|+...- . .....+.|.+.....+...+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~--~-----------------------------~~~~~~~t~~~~~~~~~~~~ 75 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANV--D-----------------------------VQSYSFTTKNLYVGHFDHKL 75 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCE--E-----------------------------EECC-----CEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC--c-----------------------------cCCCCCcceeeeeeeeecCC
Confidence 4568999999999999999999943210 0 00113445555555566778
Q ss_pred eEEEEEeCCCC------cch---HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEe
Q 010318 160 TRFTILDAPGH------KSY---VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVN 228 (513)
Q Consensus 160 ~~i~liDtPGh------~~f---~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviN 228 (513)
..+.|+||||+ +.. ...+......+|++|+|+|++.... |+. ....+.+..+... ++| +++|+|
T Consensus 76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~-~~~~~~~~~l~~~~~~~p-iilv~n 150 (228)
T 2qu8_A 76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCG---LTI-KEQINLFYSIKSVFSNKS-IVIGFN 150 (228)
T ss_dssp EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTS---SCH-HHHHHHHHHHHTCC-CCC-EEEEEE
T ss_pred CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccC---cch-HHHHHHHHHHHHhhcCCc-EEEEEe
Confidence 89999999999 442 1222233577899999999987632 110 1123344444444 788 999999
Q ss_pred eccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 229 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+|+.... .........+..+....+ ..++++++||++|.|+.++++
T Consensus 151 K~Dl~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~SA~~g~gi~~l~~ 197 (228)
T 2qu8_A 151 KIDKCNMD---SLSIDNKLLIKQILDNVK----NPIKFSSFSTLTGVGVEQAKI 197 (228)
T ss_dssp CGGGCC-----CCCHHHHHHHHHHHHHCC----SCEEEEECCTTTCTTHHHHHH
T ss_pred CcccCCch---hhHHHHHHHHHHHHHhcC----CCceEEEEecccCCCHHHHHH
Confidence 99994321 111112223333344332 126899999999999998754
No 140
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=150.80 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=84.2
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|.+|+|||||+++|+... .... . ...+.......+..+
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~--~~~~-----------------------------~-~~t~~~~~~~~~~~~ 78 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGA--FPES-----------------------------Y-TPTVFERYMVNLQVK 78 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC---------------------------------------CCCCCEEEEEEEEET
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCC--CCCC-----------------------------C-CCccceeEEEEEEEC
Confidence 3567999999999999999999995321 0000 0 000011111223333
Q ss_pred --CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCC
Q 010318 159 --TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDH 233 (513)
Q Consensus 159 --~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~ip~~ivviNK~D~~ 233 (513)
...+.|+||||+++|...+...+..+|++|+|+|+++... |+ ... ..+..+... ++| +|+|+||+|+.
T Consensus 79 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~ 151 (214)
T 2j1l_A 79 GKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNS---FD---NIFNRWYPEVNHFCKKVP-IIVVGCKTDLR 151 (214)
T ss_dssp TEEEEEEEEEC---------------CEEEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCSSCC-EEEEEECGGGG
T ss_pred CEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEEChhhh
Confidence 3478999999999998888888899999999999987521 11 111 223333332 678 99999999994
Q ss_pred CCCchHHHHHHH---------HhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 234 TVNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 234 ~~~~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... ...+.+ .++...+.+.+++ .+++++||++|.|+.++++
T Consensus 152 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~SA~~g~gi~el~~ 201 (214)
T 2j1l_A 152 KDK---SLVNKLRRNGLEPVTYHRGQEMARSVGA-----VAYLECSARLHDNVHAVFQ 201 (214)
T ss_dssp SCH---HHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECBTTTTBSHHHHHH
T ss_pred ccc---hhhhhhcccccCcccHHHHHHHHHhcCC-----CEEEEecCCCCCCHHHHHH
Confidence 321 111111 1222334444442 3899999999999998644
No 141
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.68 E-value=7.2e-17 Score=150.76 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=75.9
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC-
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~- 158 (513)
.+.++|+++|++|+|||||+++|+.....+... ....+..+.....+..+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----------------------------~~~t~~~~~~~~~~~~~~ 68 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKD-----------------------------YAMTSGVEVVVAPVTIPD 68 (208)
T ss_dssp EEEEEEEEC---------------------------------------------------------------CEEEECTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCC-----------------------------CCCccceEEEEEEEEECC
Confidence 456899999999999999999995431111100 00111112233344444
Q ss_pred ---CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH------cCCCeEEEEEee
Q 010318 159 ---TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNK 229 (513)
Q Consensus 159 ---~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~------~~ip~~ivviNK 229 (513)
...+.|+||||+++|...+...++.+|++|+|+|++++.. | ......+..+.. .++| +++|+||
T Consensus 69 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~~~p-iilv~nK 141 (208)
T 2yc2_C 69 TTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMES---F---ESCKAWFELLKSARPDRERPLR-AVLVANK 141 (208)
T ss_dssp SSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHH---H---HHHHHHHHHHHHHCSCTTSCCE-EEEEEEC
T ss_pred cccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHH---H---HHHHHHHHHHHHhhcccccCCc-EEEEEEC
Confidence 4689999999999999888888899999999999987531 1 123333444443 3677 9999999
Q ss_pred ccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccc-ccccccccc
Q 010318 230 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM-GLNMKTRVD 282 (513)
Q Consensus 230 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~-g~gi~~l~~ 282 (513)
+|+... .... ..+++..+++.++ ++++++||++ |.|+.++++
T Consensus 142 ~Dl~~~-~~~v----~~~~~~~~~~~~~------~~~~~~Sa~~~~~gi~~l~~ 184 (208)
T 2yc2_C 142 TDLPPQ-RHQV----RLDMAQDWATTNT------LDFFDVSANPPGKDADAPFL 184 (208)
T ss_dssp C--------CC----CHHHHHHHHHHTT------CEEEECCC-------CHHHH
T ss_pred cccchh-hccC----CHHHHHHHHHHcC------CEEEEeccCCCCcCHHHHHH
Confidence 999430 0000 0122333444443 4899999999 999998754
No 142
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.68 E-value=4.5e-17 Score=148.82 Aligned_cols=159 Identities=18% Similarity=0.130 Sum_probs=92.6
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
++.++|+++|++|+|||||+++|... ....... .. .+.... ....+....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~--~~~~~~~-----------------~t----------~~~~~~-~~~~~~~~~ 55 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN--TFPTDYV-----------------PT----------VFDNFS-ANVVVNGAT 55 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS--CCC-------------------------------------CB-CCCC-----
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC--CCCCCCC-----------------Ce----------eeeeEE-EEEEECCEE
Confidence 45689999999999999999999532 2111100 00 000000 001122234
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~ip~~ivviNK~D~~~~~ 236 (513)
..+.|+||||+++|...+...++.+|++|+|+|++.... ++ ... ..+..+... ++| +++++||+|+...
T Consensus 56 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~- 127 (182)
T 3bwd_D 56 VNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKAS---YE---NVSKKWIPELKHYAPGVP-IVLVGTKLDLRDD- 127 (182)
T ss_dssp --CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCC-EEEEEECHHHHTC-
T ss_pred EEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEechhhhcC-
Confidence 567799999999998888888899999999999987521 10 111 233334432 678 9999999998322
Q ss_pred chHHHHH------HHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYD------EIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~------~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
...... ...++...+.+.+++ .+++++||++|.|+.++++
T Consensus 128 -~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 173 (182)
T 3bwd_D 128 -KQFFIDHPGAVPITTVQGEELKKLIGA-----PAYIECSSKSQENVKGVFD 173 (182)
T ss_dssp -HHHHHHC--CCCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHHH
T ss_pred -cccccccccCCCCCHHHHHHHHHHcCC-----CEEEEEECCCCCCHHHHHH
Confidence 110000 011223334444442 3799999999999998643
No 143
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.67 E-value=1.3e-16 Score=150.13 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=97.7
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|++|+|||||+++|+.. ..... .. ...+.... ....+....
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~--~~~~~------------------------~~---~t~~~~~~-~~~~~~~~~ 56 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN--KFPTD------------------------YI---PTVFDNFS-ANVAVDGQI 56 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS--CCCSS------------------------CC---CSSCCCEE-EEEECSSCE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC--CCCcc------------------------CC---CccceeEE-EEEEECCEE
Confidence 46789999999999999999999532 11110 00 00111111 111122233
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~ip~~ivviNK~D~~~~~ 236 (513)
..+.|+||||+++|...+...++.+|++|+|+|+++... |+ ... ..+..+... ++| +|+|+||+|+...
T Consensus 57 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~- 128 (212)
T 2j0v_A 57 VNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKAS---YE---NVLKKWMPELRRFAPNVP-IVLVGTKLDLRDD- 128 (212)
T ss_dssp EEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCC-EEEEEECHHHHTC-
T ss_pred EEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEeCHHhhhC-
Confidence 689999999999998888888899999999999987521 10 111 233344443 788 9999999998322
Q ss_pred chHHHHHH-----HHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDE-----IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~-----i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. .... ...+...+...+++ .+++++||++|.|+.++++
T Consensus 129 -~~-~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 172 (212)
T 2j0v_A 129 -KG-YLADHTNVITSTQGEELRKQIGA-----AAYIECSSKTQQNVKAVFD 172 (212)
T ss_dssp -HH-HHHTCSSCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHHH
T ss_pred -cc-ccccccCCCCHHHHHHHHHHcCC-----ceEEEccCCCCCCHHHHHH
Confidence 11 0000 12233334444443 3799999999999998644
No 144
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.66 E-value=1.4e-16 Score=167.99 Aligned_cols=147 Identities=25% Similarity=0.294 Sum_probs=104.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
..++|+++|.+|+|||||+|+|+.....+.. ...|.|.+.....+..++.
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs------------------------------~~~gTT~d~~~~~i~~~g~ 291 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVT------------------------------DIPGTTRDVISEEIVIRGI 291 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCC------------------------------CSSCCSSCSCCEEEEETTE
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccC------------------------------CCCCeeeeeEEEEEecCCe
Confidence 3479999999999999999999755322211 1267777777777888899
Q ss_pred EEEEEeCCCCc-chH--------HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 161 RFTILDAPGHK-SYV--------PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 161 ~i~liDtPGh~-~f~--------~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
.+.|+||||++ ++. ..+...+..+|++|+|+|++.+.. .+..+.+..+ .+.| +|+|+||+|
T Consensus 292 ~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s-------~~~~~il~~l--~~~p-iivV~NK~D 361 (482)
T 1xzp_A 292 LFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLD-------EEDRKILERI--KNKR-YLVVINKVD 361 (482)
T ss_dssp EEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCC-------HHHHHHHHHH--TTSS-EEEEEEECS
T ss_pred EEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCC-------HHHHHHHHHh--cCCC-EEEEEECcc
Confidence 99999999998 652 445667889999999999988632 2333443333 3677 899999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+... .+ .+++ ..++ +. ..+++++||++|.|++++++
T Consensus 362 L~~~-~~---~~~~----~~~~---~~----~~~~i~iSAktg~Gi~eL~~ 397 (482)
T 1xzp_A 362 VVEK-IN---EEEI----KNKL---GT----DRHMVKISALKGEGLEKLEE 397 (482)
T ss_dssp SCCC-CC---HHHH----HHHH---TC----STTEEEEEGGGTCCHHHHHH
T ss_pred cccc-cC---HHHH----HHHh---cC----CCcEEEEECCCCCCHHHHHH
Confidence 9432 11 1122 2222 11 24799999999999999754
No 145
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.66 E-value=4.9e-16 Score=150.38 Aligned_cols=157 Identities=13% Similarity=0.112 Sum_probs=102.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|++|+|||||+|+|++........ ...|.|.......+.+.+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~-----------------------------~~~~~T~~~~~~~~~~~~ 69 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRL-----------------------------GATSVTRACTTGSRRWDK 69 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC--------------------------------------CCSCEEEEEEETT
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccC-----------------------------CCCCccccEEEEEEEECC
Confidence 467999999999999999999996544322110 013456655566778889
Q ss_pred eEEEEEeCCCC--------cchHHHHHHhh----hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc------CCC
Q 010318 160 TRFTILDAPGH--------KSYVPNMISGA----SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL------GVT 221 (513)
Q Consensus 160 ~~i~liDtPGh--------~~f~~~~~~~~----~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~------~ip 221 (513)
..++|+||||. ..+...+.+.+ ..+|++|+|+|+.. . .......+..+... +.|
T Consensus 70 ~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~-------~~~~~~~~~~l~~~~~~~~~~~~ 141 (247)
T 3lxw_A 70 CHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-F-------TAQDQQAVRQVRDMFGEDVLKWM 141 (247)
T ss_dssp EEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-C-------CHHHHHHHHHHHHHHCGGGGGGE
T ss_pred cEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-C-------CHHHHHHHHHHHHHhChhhhccE
Confidence 99999999997 66666666655 89999999999974 2 13555556666554 667
Q ss_pred eEEEEEeeccCCCCCchHHHHHHH--HhhhHhhhhhccCcccCCeeEEEeecc-----cccccccccc
Q 010318 222 KLLLVVNKMDDHTVNWSKERYDEI--ESKMTPFLKASGYNVKKDVQFLPISGL-----MGLNMKTRVD 282 (513)
Q Consensus 222 ~~ivviNK~D~~~~~~~~~~~~~i--~~~l~~~l~~~g~~~~~~~~iipiSa~-----~g~gi~~l~~ 282 (513)
+|++.||+|+...+ .+.+-.- ...+..+++.+|. +++++++. .+.|+.+|++
T Consensus 142 -iilv~nK~Dl~~~~--~~~~l~~~~~~~l~~l~~~~g~------~~~~~~~~~~~~~~~~~v~~Ll~ 200 (247)
T 3lxw_A 142 -VIVFTRKEDLAGGS--LHDYVSNTENRALRELVAECGG------RVCAFDNRATGREQEAQVEQLLG 200 (247)
T ss_dssp -EEEEECGGGGTTCC--HHHHHHHCCCHHHHHHHHHTTT------CEEECCTTCCHHHHHHHHHHHHH
T ss_pred -EEEEEchHhcCCCC--HHHHHhhcccHHHHHHHHHcCC------eEEEEeCCCCccccHHHHHHHHH
Confidence 89999999994332 1111111 0345666666654 34444433 3678887644
No 146
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.66 E-value=3e-16 Score=148.30 Aligned_cols=164 Identities=13% Similarity=0.048 Sum_probs=98.5
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
...+.++|+++|.+|+|||||+++|+... .... . ....+.+. .....+..
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~--~~~~------------------------~---~~t~~~~~-~~~~~~~~ 72 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDC--YPET------------------------Y---VPTVFENY-TACLETEE 72 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSC--CCSS------------------------C---CCCSEEEE-EEEEEC--
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCC--CCCC------------------------c---CCeeeeeE-EEEEEECC
Confidence 34567999999999999999999995321 1100 0 00011111 11122333
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc--CCCeEEEEEeeccCCCC
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL--GVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~--~ip~~ivviNK~D~~~~ 235 (513)
....+.|+||||+++|...+...++.+|++|+|+|+++... |. ......+..+... ++| +++|.||+|+...
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~--~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~ 146 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPET---VD--SALKKWRTEILDYCPSTR-VLLIGCKTDLRTD 146 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHH---HH--HHHTHHHHHHHHHCTTSE-EEEEEECGGGGGC
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHH---HH--HHHHHHHHHHHHhCCCCC-EEEEEEChhhccc
Confidence 45789999999999998888788899999999999987531 11 0012233444443 677 8999999999421
Q ss_pred CchHHH------HHHHHhhhHhhhhhccCcccCCeeEEEeecccccc-cccccc
Q 010318 236 NWSKER------YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLN-MKTRVD 282 (513)
Q Consensus 236 ~~~~~~------~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~g-i~~l~~ 282 (513)
...... .....++...+.+.+++ .+++++||++|.| +.++++
T Consensus 147 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~SA~~g~g~v~~lf~ 195 (214)
T 3q3j_B 147 LSTLMELSHQKQAPISYEQGCAIAKQLGA-----EIYLEGSAFTSEKSIHSIFR 195 (214)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHTC-----SEEEECCTTTCHHHHHHHHH
T ss_pred hhhhhhhcccccCccCHHHHHHHHHHcCC-----CEEEEeccCCCcccHHHHHH
Confidence 000000 00011223334444443 2799999999998 998644
No 147
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.66 E-value=3.2e-16 Score=146.02 Aligned_cols=157 Identities=16% Similarity=0.134 Sum_probs=95.6
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|+... .... ....+.+.....+..+
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~ 64 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTE------------------------------YIPTAFDNFSAVVSVD 64 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------------------------------------CCSSEEEEEEEEET
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCC--CCCC------------------------------CCCcccceeEEEEEEC
Confidence 4567899999999999999999995321 1100 0011111111234444
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCC
Q 010318 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDH 233 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~ip~~ivviNK~D~~ 233 (513)
+ ..+.|+||||+++|...+...+..+|++|+|+|++.... +. ... ..+..+... ++| +++|+||+|+.
T Consensus 65 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~ 137 (201)
T 2q3h_A 65 GRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSS---FQ---NVSEKWVPEIRCHCPKAP-IILVGTQSDLR 137 (201)
T ss_dssp TEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCSSSC-EEEEEECGGGG
T ss_pred CEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCC-EEEEEECHhhh
Confidence 4 467799999999998777777889999999999987521 10 111 222333333 778 89999999994
Q ss_pred CCCchHHHHHHH---------HhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 234 TVNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 234 ~~~~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
... .....+ .++...+...+++ .+++++||++|.|+.++++
T Consensus 138 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~g~gi~~l~~ 187 (201)
T 2q3h_A 138 EDV---KVLIELDKCKEKPVPEEAAKLLAEEIKA-----ASYIECSALTQKNLKEVFD 187 (201)
T ss_dssp GCH---HHHHHHHTTTCCCCCHHHHHHHHHHHTC-----SEEEECCTTTCTTHHHHHH
T ss_pred hch---hhhhhhcccccccCCHHHHHHHHHhcCC-----cEEEEEecCCCCCHHHHHH
Confidence 321 111110 1222333334332 3799999999999998654
No 148
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=4.9e-16 Score=144.29 Aligned_cols=152 Identities=20% Similarity=0.140 Sum_probs=94.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|++|+|||||+++|+...- ... . ....+... .....+....
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~--~~~------------------------~---~~t~~~~~-~~~~~~~~~~ 75 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRF--IWE------------------------Y---DPTLESTY-RHQATIDDEV 75 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCC--CSC------------------------C---CTTCCEEE-EEEEEETTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC--Ccc------------------------c---CCCCCceE-EEEEEECCEE
Confidence 4578999999999999999999954211 100 0 00011111 1112222234
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~~~~ 235 (513)
..+.|+||||+++ ...+...++.+|++|+|+|+++... ++ .....+..+.. .++| +++|+||+|+...
T Consensus 76 ~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~ 147 (196)
T 2atv_A 76 VSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGS---FE---EVLPLKNILDEIKKPKNVT-LILVGNKADLDHS 147 (196)
T ss_dssp EEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTTSCCC-EEEEEECGGGGGG
T ss_pred EEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhhCCCCCc-EEEEEECcccccc
Confidence 6799999999988 5556667789999999999987421 11 22223333332 4778 9999999999431
Q ss_pred -CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccc-ccccccc
Q 010318 236 -NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVD 282 (513)
Q Consensus 236 -~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~-gi~~l~~ 282 (513)
....+ +...+....+ ++++++||++|. |+.++++
T Consensus 148 ~~v~~~-------~~~~~~~~~~------~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 148 RQVSTE-------EGEKLATELA------CAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp CCSCHH-------HHHHHHHHHT------SEEEECCTTTCTTCHHHHHH
T ss_pred cccCHH-------HHHHHHHHhC------CeEEEECCCcCCcCHHHHHH
Confidence 11111 1222333333 479999999999 9998654
No 149
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.64 E-value=1.8e-17 Score=154.60 Aligned_cols=153 Identities=20% Similarity=0.173 Sum_probs=92.5
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
....++|+++|++|+|||||+++|+.. ... ......++.+.....+..+
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 78 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADD--TYT-----------------------------ESYISTIGVDFKIRTIELD 78 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCC--CCC-----------------------------CHHHHHHCCSEEEEEEEET
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcC--CCC-----------------------------CCcCCcccceEEEEEEEEC
Confidence 356799999999999999999998421 111 0111223333333444455
Q ss_pred C--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCCeEEEEEeeccCC
Q 010318 159 T--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVTKLLLVVNKMDDH 233 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip~~ivviNK~D~~ 233 (513)
+ ..+.|+||||+++|...+...++.+|++|+|+|+++... |+ .....+..+... ++| +|+|+||+|+.
T Consensus 79 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~p-~ilv~nK~Dl~ 151 (199)
T 3l0i_B 79 GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES---FN---NVKQWLQEIDRYASENVN-KLLVGNKCDLT 151 (199)
T ss_dssp TEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHH---HH---HHHHHHHHHHSCC-CCSE-EEEC-CCSSCC
T ss_pred CEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhccCCCC-EEEEEECccCC
Confidence 5 679999999999998777778889999999999987531 11 222333333333 577 89999999984
Q ss_pred CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.... . ...+...+...++ ++++++||++|.|+.+++
T Consensus 152 ~~~~--v----~~~~~~~~~~~~~------~~~~~vSA~~g~gv~~l~ 187 (199)
T 3l0i_B 152 TKKV--V----DYTTAKEFADSLG------IPFLETSAKNATNVEQSF 187 (199)
T ss_dssp --CC--C----CSCC-CHHHHTTT------CCBCCCCC---HHHHHHH
T ss_pred cccc--C----CHHHHHHHHHHcC------CeEEEEECCCCCCHHHHH
Confidence 2210 0 0012233333333 479999999999999853
No 150
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.64 E-value=9.4e-16 Score=140.91 Aligned_cols=158 Identities=13% Similarity=0.118 Sum_probs=96.7
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|++|+|||||+++|.... .... . ....+.... ....+....
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~--~~~~------------------------~---~~t~~~~~~-~~~~~~~~~ 54 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDC--FPEN------------------------Y---VPTVFENYT-ASFEIDTQR 54 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSC--CCSS------------------------C---CCCSEEEEE-EEEECSSCE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCC--CCCC------------------------C---CCccceeEE-EEEEECCEE
Confidence 456899999999999999999995321 1100 0 000111110 111222334
Q ss_pred eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcch-HHHHHHHHH--cCCCeEEEEEeeccCCCCC
Q 010318 160 TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt-~e~l~~~~~--~~ip~~ivviNK~D~~~~~ 236 (513)
..+.|+||||+++|...+...++.+|++|+|+|++.... |+ .. ...+..+.. .++| +++|.||+|+...
T Consensus 55 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~~- 126 (184)
T 1m7b_A 55 IELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLRTD- 126 (184)
T ss_dssp EEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCE-EEEEEECGGGGGC-
T ss_pred EEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEEEcchhhcc-
Confidence 679999999999998777777889999999999987421 10 11 112233333 2677 9999999999421
Q ss_pred chHHHHHHH---------HhhhHhhhhhccCcccCCeeEEEeecc-cccccccccc
Q 010318 237 WSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~iipiSa~-~g~gi~~l~~ 282 (513)
.....++ .++...+.+.++ .++++++||+ +|.|+.++++
T Consensus 127 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~gi~~l~~ 175 (184)
T 1m7b_A 127 --VSTLVELSNHRQTPVSYDQGANMAKQIG-----AATYIECSALQSENSVRDIFH 175 (184)
T ss_dssp --HHHHHHHHTTTCCCCCHHHHHHHHHHHT-----CSEEEECBTTTBHHHHHHHHH
T ss_pred --hhhHhhhhhcccCCCCHHHHHHHHHHcC-----CcEEEEeeecCCCcCHHHHHH
Confidence 1111111 122333444443 2489999999 6999998643
No 151
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.64 E-value=7.2e-16 Score=164.33 Aligned_cols=154 Identities=14% Similarity=0.170 Sum_probs=103.6
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++.++|+++|.+|+|||||+++|+... +.. ...|+......+...
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~--~~~--------------------------------~~~T~~~~~~~~~~~ 364 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQ--SVT--------------------------------TIPTVGFNVETVTYK 364 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSS--CCC--------------------------------CCCCSSEEEEEEESS
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCC--CCC--------------------------------cCCccceeEEEEEeC
Confidence 3467899999999999999999995322 110 112333444557778
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHH-HHHH---cCCCeEEEEEeeccCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKT---LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~-~~~~---~~ip~~ivviNK~D~~~ 234 (513)
+..+.|+||||+++|...+...+..+|++|+|+|++.... |+ .....+. ++.. .++| +|+|+||+|+..
T Consensus 365 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s---~~---~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 365 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR---ID---EARQELHRIINDREMRDAI-ILIFANKQDLPD 437 (497)
T ss_dssp SCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGG---HH---HHHHHHHHHHTSGGGTTCE-EEEEEECCSSSS
T ss_pred CEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhH---HH---HHHHHHHHHhhhhhcCCCc-EEEEEECCCCCc
Confidence 8999999999999998888888999999999999987521 11 1122222 2221 3678 999999999953
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. . ..++...+...+ . ....++++++||++|.|+.++++
T Consensus 438 ~~-~---~~~~~~~~~~~~----~-~~~~~~~~~~SA~~g~gi~~l~~ 476 (497)
T 3lvq_E 438 AM-K---PHEIQEKLGLTR----I-RDRNWYVQPSCATSGDGLYEGLT 476 (497)
T ss_dssp CC-C---HHHHHHHTTCTT----C-CSSCEEEEECBTTTTBTHHHHHH
T ss_pred CC-C---HHHHHHHhchhh----h-hcCCeEEEEEECCCCCCHHHHHH
Confidence 21 1 122222221111 1 12356899999999999999644
No 152
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.63 E-value=2.8e-16 Score=164.98 Aligned_cols=146 Identities=19% Similarity=0.189 Sum_probs=92.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCe
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETT 160 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~ 160 (513)
..++|+++|++|+|||||+|+|+.....+... ..|.|.+.....+..++.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~------------------------------~~gtT~d~~~~~i~~~g~ 272 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTD------------------------------LPGTTRDVVESQLVVGGI 272 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSC------------------------------CTTCCHHHHHHEEEETTE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccC------------------------------CCCeeEEEEEEEEEECCE
Confidence 45789999999999999999997654332211 145565555556777889
Q ss_pred EEEEEeCCCCcchHH--------HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 161 RFTILDAPGHKSYVP--------NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 161 ~i~liDtPGh~~f~~--------~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
.+.|+||||+.++.. .+...+..+|++|+|+|++++.. .+..+.+..+. ..| +|+|+||+|+
T Consensus 273 ~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~-------~~~~~i~~~l~--~~p-iivV~NK~Dl 342 (462)
T 3geh_A 273 PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWT-------TGDQEIYEQVK--HRP-LILVMNKIDL 342 (462)
T ss_dssp EEEECC--------------------CCCCSCSEEEEEEETTTCSC-------HHHHHHHHHHT--TSC-EEEEEECTTS
T ss_pred EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCC-------HHHHHHHHhcc--CCc-EEEEEECCCC
Confidence 999999999877632 23345678999999999998732 23333333332 356 8999999999
Q ss_pred CCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.... . . ..+ +.+. ...+++++||++|.|++++++
T Consensus 343 ~~~~--~--~----~~~----~~~~----~~~~~i~iSAktg~Gi~eL~~ 376 (462)
T 3geh_A 343 VEKQ--L--I----TSL----EYPE----NITQIVHTAAAQKQGIDSLET 376 (462)
T ss_dssp SCGG--G--S----TTC----CCCT----TCCCEEEEBTTTTBSHHHHHH
T ss_pred Ccch--h--h----HHH----HHhc----cCCcEEEEECCCCCCHHHHHH
Confidence 4321 1 0 011 1111 135899999999999998754
No 153
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.63 E-value=2.8e-15 Score=136.58 Aligned_cols=149 Identities=15% Similarity=0.114 Sum_probs=89.6
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+..+|+++|.+|+|||||+++|.... ... . ....|... ...+..++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~--~~~-------------------------~---~~t~~~~~---~~~~~~~~ 51 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGS--YQV-------------------------L---EKTESEQY---KKEMLVDG 51 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSC--CCC-------------------------C---SSCSSSEE---EEEEEETT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC--CCC-------------------------c---CCCcceeE---EEEEEECC
Confidence 467899999999999999999995321 110 0 00011111 12233333
Q ss_pred --eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH------cCCCeEEEEEeecc
Q 010318 160 --TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMD 231 (513)
Q Consensus 160 --~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~------~~ip~~ivviNK~D 231 (513)
..+.|+||||++++ ..++.+|++|+|+|+++... |+ .....+..+.. .++| +++|.||+|
T Consensus 52 ~~~~l~i~Dt~G~~~~-----~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilv~nK~D 119 (178)
T 2iwr_A 52 QTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENS---FQ---AVSRLHGQLSSLRGEGRGGLA-LALVGTQDR 119 (178)
T ss_dssp EEEEEEEEECSSSCCH-----HHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHCSSSCCCE-EEEEEECTT
T ss_pred EEEEEEEEECCCCchh-----HHHHhCCEEEEEEECcCHHH---HH---HHHHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 56899999999883 34577999999999987521 11 11221112322 2577 999999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+.......... +++..+.+..+ .++++++||++|.|+.++++
T Consensus 120 l~~~~~~~v~~----~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~lf~ 161 (178)
T 2iwr_A 120 ISASSPRVVGD----ARARALXADMK-----RCSYYETXATYGLNVDRVFQ 161 (178)
T ss_dssp CBTTBCCCSCH----HHHHHHHHHHS-----SEEEEEEBTTTTBTHHHHHH
T ss_pred ccccccCcCCH----HHHHHHHHhhc-----CCeEEEEeccccCCHHHHHH
Confidence 83211001111 11222333321 36899999999999998754
No 154
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=140.52 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=91.9
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|.+|+|||||+++|+... .... . ....+.+.. ....+...
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~--~~~~------------------------~---~~t~~~~~~-~~~~~~~~ 67 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKR--FISE------------------------Y---DPNLEDTYS-SEETVDHQ 67 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSS--CCSC------------------------C---CTTCCEEEE-EEEEETTE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCC--CCcc------------------------c---CCCccceee-EEEEECCE
Confidence 4567999999999999999999995322 1100 0 000122211 11122223
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH------cCCCeEEEEEeeccC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMDD 232 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~------~~ip~~ivviNK~D~ 232 (513)
...+.|+||||+++|... ...++.+|++|+|+|++.... |+ .....+..+.. .++| +|+|.||+|+
T Consensus 68 ~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~~~p-iilv~nK~Dl 139 (187)
T 3c5c_A 68 PVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQS---FD---SSSSYLELLALHAKETQRSIP-ALLLGNKLDM 139 (187)
T ss_dssp EEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHHHHHCCCCC-EEEEEECGGG
T ss_pred EEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhhccCCCCC-EEEEEECcch
Confidence 467889999999988653 456788999999999986421 11 22223333332 3788 9999999998
Q ss_pred CCCC-chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeec-ccccccccccc
Q 010318 233 HTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISG-LMGLNMKTRVD 282 (513)
Q Consensus 233 ~~~~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa-~~g~gi~~l~~ 282 (513)
.... .+. ++...+.+..+ ++++++|| ++|.|+.++++
T Consensus 140 ~~~~~v~~-------~~~~~~~~~~~------~~~~e~Sa~~~g~gv~~lf~ 178 (187)
T 3c5c_A 140 AQYRQVTK-------AEGVALAGRFG------CLFFEVSACLDFEHVQHVFH 178 (187)
T ss_dssp GGGCSSCH-------HHHHHHHHHHT------CEEEECCSSSCSHHHHHHHH
T ss_pred hhcCccCH-------HHHHHHHHHcC------CcEEEEeecCccccHHHHHH
Confidence 4211 111 22233344443 47999999 89999998643
No 155
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.63 E-value=2e-15 Score=142.97 Aligned_cols=154 Identities=20% Similarity=0.237 Sum_probs=97.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe-
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 157 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~- 157 (513)
+.+..+|+++|..++|||||+++++. +..... ....+..+.....+..
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~--~~f~~~-----------------------------~~~Tig~d~~~k~~~~~ 58 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMY--DSFDNT-----------------------------YQATIGIDFLSKTMYLE 58 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHH--SCCC---------------------------------------CEEEEEECS
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHh--CCCCCC-----------------------------cCCccceEEEEEEEEec
Confidence 34568999999999999999999842 322111 0111112222222333
Q ss_pred -CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCC
Q 010318 158 -ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDH 233 (513)
Q Consensus 158 -~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~ 233 (513)
....+.|+||+|+++|...+....+.+|++|+|.|.+.... |+ .....+..++. .++| +|+|.||+|+.
T Consensus 59 ~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~S---f~---~i~~~~~~i~~~~~~~~p-iilVgNK~Dl~ 131 (216)
T 4dkx_A 59 DRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNS---FQ---QTTKWIDDVRTERGSDVI-IMLVGNKTDLA 131 (216)
T ss_dssp SCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHH---HH---THHHHHHHHHHHHTTSSE-EEEEEECTTCG
T ss_pred ceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHH---HH---HHHHHHHHHHHhcCCCCe-EEEEeeccchH
Confidence 34678899999999999888888999999999999887432 22 22333333332 3577 89999999983
Q ss_pred CCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 234 TVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 234 ~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. .... .++...+.++++ ++++.+||++|.||.++++
T Consensus 132 ~~--r~V~----~~e~~~~a~~~~------~~~~e~SAktg~nV~e~F~ 168 (216)
T 4dkx_A 132 DK--RQVS----IEEGERKAKELN------VMFIETSAKAGYNVKQLFR 168 (216)
T ss_dssp GG--CCSC----HHHHHHHHHHHT------CEEEEEBTTTTBSHHHHHH
T ss_pred hc--Cccc----HHHHhhHHHHhC------CeeEEEeCCCCcCHHHHHH
Confidence 21 1111 122333444444 4799999999999999744
No 156
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.43 E-value=2.4e-17 Score=154.21 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=98.5
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.++.++|+++|.+|+|||||+++|+... ...... .. .+... .....+...
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~-----------------~t----------~~~~~-~~~~~~~~~ 76 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYI-----------------PT----------VFDNY-SANVMVDGK 76 (204)
Confidence 3567999999999999999999985321 111000 00 00000 001112223
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCCCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~ip~~ivviNK~D~~~~ 235 (513)
...+.|+||||+++|...+...++.+|++|+|+|++++.. ++ ... ..+..+... ++| +++|+||+|+...
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s---~~---~~~~~~~~~l~~~~~~~p-iilv~NK~Dl~~~ 149 (204)
T 3th5_A 77 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPAS---FE---NVRAKWYPEVRHHCPNTP-IILVGTKLDLRDD 149 (204)
Confidence 4567799999999998888888899999999999987632 11 111 233333333 678 8999999999432
Q ss_pred CchHHHH------HHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERY------DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~------~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
....+.+ .....+...+.+..++ .+++++||++|.|+.++++
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~vSA~~g~gi~~l~~ 197 (204)
T 3th5_A 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVFD 197 (204)
Confidence 1110000 0111222233333322 2799999999999998754
No 157
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.62 E-value=1.1e-15 Score=140.42 Aligned_cols=155 Identities=21% Similarity=0.287 Sum_probs=91.8
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEE
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRF 162 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i 162 (513)
++|+++|++|+|||||+++|+... .. .....|+|...... ... .+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~--~~-----------------------------~~~~~~~t~~~~~~--~~~--~~ 46 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK--VR-----------------------------RGKRPGVTRKIIEI--EWK--NH 46 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC--CS-----------------------------SSSSTTCTTSCEEE--EET--TE
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC--Cc-----------------------------cCCCCCccceeEEE--ecC--CE
Confidence 689999999999999999995321 10 01113444333222 222 78
Q ss_pred EEEeCCC-----------CcchHHHHH---Hh-hhhcCEEEEEEECCCCccc-ccc---cCCcchHHHHHHHHHcCCCeE
Q 010318 163 TILDAPG-----------HKSYVPNMI---SG-ASQADIGVLVISARKGEFE-TGF---EKGGQTREHVMLAKTLGVTKL 223 (513)
Q Consensus 163 ~liDtPG-----------h~~f~~~~~---~~-~~~~D~~ilVVda~~g~~e-~~~---~~~~qt~e~l~~~~~~~ip~~ 223 (513)
.|+|||| ++.|...+. +. +..+++++.|+|+.....- ..+ ....++.+.+..+...++| +
T Consensus 47 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-i 125 (190)
T 2cxx_A 47 KIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP-T 125 (190)
T ss_dssp EEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC-E
T ss_pred EEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc-e
Confidence 9999999 455544433 33 5567788888887642100 000 0012334455566667899 9
Q ss_pred EEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcc-cCCeeEEEeecccccccccccc
Q 010318 224 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 224 ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~-~~~~~iipiSa~~g~gi~~l~~ 282 (513)
++|+||+|+... ..+.. ..+.+.+++.. ....+++++||++|.|+.++++
T Consensus 126 ilv~nK~Dl~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 176 (190)
T 2cxx_A 126 IVAVNKLDKIKN--VQEVI-------NFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKN 176 (190)
T ss_dssp EEEEECGGGCSC--HHHHH-------HHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHH
T ss_pred EEEeehHhccCc--HHHHH-------HHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHH
Confidence 999999999432 22222 22333333310 0023689999999999998644
No 158
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.62 E-value=1.6e-15 Score=149.11 Aligned_cols=160 Identities=14% Similarity=0.163 Sum_probs=88.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC-
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 159 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~- 159 (513)
..++|+++|++|+|||||+|+|+.......... + .......+++++.....+..++
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~-----------~------------~~~~~~~t~~~~~~~~~~~~~~~ 63 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYP-----------G------------PSHRIKKTVQVEQSKVLIKEGGV 63 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC--------------------------------------CCCEEEEEEECC--C
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCC-----------C------------cccccCCceEEEEEEEEEecCCe
Confidence 468999999999999999999853322111000 0 0000123444444444555555
Q ss_pred -eEEEEEeCCCCcch-------HHHH-------HHhhh-------------hcCEEEEEEECCC-CcccccccCCcchHH
Q 010318 160 -TRFTILDAPGHKSY-------VPNM-------ISGAS-------------QADIGVLVISARK-GEFETGFEKGGQTRE 210 (513)
Q Consensus 160 -~~i~liDtPGh~~f-------~~~~-------~~~~~-------------~~D~~ilVVda~~-g~~e~~~~~~~qt~e 210 (513)
..++|+||||+.++ .... ...+. .+|+++++|++.. +. .....+
T Consensus 64 ~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~-------~~~d~~ 136 (274)
T 3t5d_A 64 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL-------KPLDIE 136 (274)
T ss_dssp CEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSC-------CHHHHH
T ss_pred EEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCC-------CHHHHH
Confidence 48999999998432 1111 11111 3789999997654 42 245666
Q ss_pred HHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 211 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 211 ~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.+..+.. ++| +|+|+||+|+. ........++.+...+...+ ++++++||.+|.|+.++.+
T Consensus 137 ~l~~l~~-~~p-vi~V~nK~D~~----~~~e~~~~~~~i~~~l~~~~------i~v~~~sa~~~~~~~~l~~ 196 (274)
T 3t5d_A 137 FMKRLHE-KVN-IIPLIAKADTL----TPEECQQFKKQIMKEIQEHK------IKIYEFPETDDEEENKLVK 196 (274)
T ss_dssp HHHHHTT-TSC-EEEEESSGGGS----CHHHHHHHHHHHHHHHHHTT------CCCCCC-----------CH
T ss_pred HHHHHhc-cCC-EEEEEeccCCC----CHHHHHHHHHHHHHHHHHcC------CeEEcCCCCCChhHHHHHH
Confidence 6666655 788 99999999983 23455566666666666554 4689999999999998643
No 159
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.62 E-value=2.9e-15 Score=137.96 Aligned_cols=151 Identities=17% Similarity=0.136 Sum_probs=94.1
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
...+.++|+++|.+|+|||||+++|+... .... ..+ .+... ...+..
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~--~~~~------------------------~~~----t~~~~---~~~~~~ 62 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGT--YVQE------------------------ESP----EGGRF---KKEIVV 62 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSS--CCCC------------------------CCT----TCEEE---EEEEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCC--CCCC------------------------cCC----CcceE---EEEEEE
Confidence 34677999999999999999999985321 1100 000 11111 123344
Q ss_pred CC--eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeecc
Q 010318 158 ET--TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMD 231 (513)
Q Consensus 158 ~~--~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D 231 (513)
++ ..+.|+||||+++|. .++.+|++|+|+|+++... |+ .....+..+.. .++| ++++.||+|
T Consensus 63 ~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~D 130 (184)
T 3ihw_A 63 DGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEIS---FQ---TVYNYFLRLCSFRNASEVP-MVLVGTQDA 130 (184)
T ss_dssp TTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHTTSCGGGSC-EEEEEECTT
T ss_pred CCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEEECcc
Confidence 44 567889999999987 5677999999999987521 11 11223333333 3577 899999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+...+..... .+++..+...++ .++++++||++|.|+.++++
T Consensus 131 l~~~~~~~v~----~~~~~~~~~~~~-----~~~~~e~Sa~~~~gv~~lf~ 172 (184)
T 3ihw_A 131 ISAANPRVID----DSRARKLSTDLK-----RCTYYETCATYGLNVERVFQ 172 (184)
T ss_dssp CBTTBCCCSC----HHHHHHHHHHTT-----TCEEEEEBTTTTBTHHHHHH
T ss_pred cccccccccC----HHHHHHHHHHcC-----CCeEEEecCCCCCCHHHHHH
Confidence 8321111111 122233344433 25899999999999998654
No 160
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.62 E-value=4.1e-15 Score=138.37 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=94.1
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
....++|+++|.+|+|||||+++|......... ..+++.+.....+..+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 68 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAH-------------------------------EPENPEDTYERRIMVD 68 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGG-------------------------------TTTSCTTEEEEEEEET
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccC-------------------------------CCCcccceEEEEEEEC
Confidence 446789999999999999999998422221100 0111212112223334
Q ss_pred C--eEEEEEeCCCCcchHH-HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeecc
Q 010318 159 T--TRFTILDAPGHKSYVP-NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMD 231 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f~~-~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D 231 (513)
+ ..+.|+||||+++|.. .....++.+|++|+|+|+++... |+ ...+.+..+.. .++| +|+|.||+|
T Consensus 69 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~nK~D 141 (195)
T 3cbq_A 69 KEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRS---FS---KVPETLLRLRAGRPHHDLP-VILVGNKSD 141 (195)
T ss_dssp TEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHH---HH---THHHHHHHHHHHSTTSCCC-EEEEEECTT
T ss_pred CEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCCC-EEEEeechh
Confidence 4 4678899999988765 34445678999999999986421 11 22233333333 3678 999999999
Q ss_pred CCCCC-chHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVN-WSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~-~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+.... .+.+ +...+.+..+ ++++++||++|.|+.++++
T Consensus 142 l~~~~~v~~~-------~~~~~a~~~~------~~~~e~Sa~~~~~v~~lf~ 180 (195)
T 3cbq_A 142 LARSREVSLE-------EGRHLAGTLS------CKHIETSAALHHNTRELFE 180 (195)
T ss_dssp CTTTCCSCHH-------HHHHHHHHTT------CEEEEEBTTTTBSHHHHHH
T ss_pred ccccCCcCHH-------HHHHHHHHhC------CEEEEEcCCCCCCHHHHHH
Confidence 94321 1111 1222333332 4799999999999998644
No 161
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.61 E-value=1.4e-15 Score=142.86 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=96.8
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEe-eeEEEEe
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEV-GRAHFET 157 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~-~~~~~~~ 157 (513)
....++|+++|.+|+|||||+++|.... .... ....+.... ....+..
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~--~~~~-----------------------------~~~t~~~~~~~~~~~~~ 73 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDC--FPEN-----------------------------YVPTVFENYTASFEIDT 73 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSC--CCSS-----------------------------CCCCSEEEEEEEEESSS
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCC--CCCC-----------------------------cCCccceeEEEEEEECC
Confidence 4567999999999999999999995321 1100 001111111 1112223
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcch-HHHHHHHHH--cCCCeEEEEEeeccCCC
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQT-REHVMLAKT--LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt-~e~l~~~~~--~~ip~~ivviNK~D~~~ 234 (513)
....+.|+||||+++|.......++.+|++|+|+|++.... |+ .. ...+..+.. .++| +|+|.||+|+..
T Consensus 74 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s---~~---~~~~~~~~~i~~~~~~~p-iilv~nK~Dl~~ 146 (205)
T 1gwn_A 74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPET---LD---SVLKKWKGEIQEFCPNTK-MLLVGCKSDLRT 146 (205)
T ss_dssp SEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHHCCCCC-EEEEEechhhcc
Confidence 34689999999999998777777889999999999987421 11 11 122233333 2677 999999999942
Q ss_pred CCchHHHHHHH---------HhhhHhhhhhccCcccCCeeEEEeecc-cccccccccc
Q 010318 235 VNWSKERYDEI---------ESKMTPFLKASGYNVKKDVQFLPISGL-MGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i---------~~~l~~~l~~~g~~~~~~~~iipiSa~-~g~gi~~l~~ 282 (513)
. .....++ .++...+.+.++ .++++++||+ +|.|+.++++
T Consensus 147 ~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~e~SAk~~~~gv~~lf~ 196 (205)
T 1gwn_A 147 D---VSTLVELSNHRQTPVSYDQGANMAKQIG-----AATYIECSALQSENSVRDIFH 196 (205)
T ss_dssp C---HHHHHHHHTTTCCCCCHHHHHHHHHHHT-----CSEEEECCTTTCHHHHHHHHH
T ss_pred c---hhhhhhhcccccCCCCHHHHHHHHHHcC-----CCEEEEeeeccCCcCHHHHHH
Confidence 1 1111111 122333444443 2489999999 6999998643
No 162
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.60 E-value=2.1e-15 Score=151.58 Aligned_cols=159 Identities=18% Similarity=0.159 Sum_probs=99.1
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+++|.+|+|||||+++|... .+... ..+.+.+.....+..++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~~ 200 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTN--AFPGE------------------------------YIPTVFDNYSANVMVDG 200 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHS--CCCCS------------------------------CCCCSEEEEEEEEEETT
T ss_pred cceeEEEEECCCCCChHHHHHHHHhC--CCCcc------------------------------cCCcccceeEEEEEECC
Confidence 45689999999999999999998432 11110 01112222223344444
Q ss_pred e--EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHc--CCCeEEEEEeeccCCC
Q 010318 160 T--RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTL--GVTKLLLVVNKMDDHT 234 (513)
Q Consensus 160 ~--~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~-e~l~~~~~~--~ip~~ivviNK~D~~~ 234 (513)
. .+.|+||||+++|.......++.+|++|+|+|++.... ++ ... ..+..+... ++| +++|+||+|+..
T Consensus 201 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 201 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPAS---FH---HVRAKWYPEVRHHCPNTP-IILVGTKLDLRD 273 (332)
T ss_dssp EEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHH---HH---HHHHTHHHHHHHHCTTSC-EEEEEECHHHHT
T ss_pred EEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHH---HH---HHHHHHHHHHHhhCCCCc-EEEEEEchhccc
Confidence 4 45699999999998888888899999999999987521 10 111 222344443 778 999999999843
Q ss_pred CCchHHHHHH------HHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDE------IESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~------i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.......+.. ...+...+.+..++ .+++++||++|.|+.++++
T Consensus 274 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~~ 322 (332)
T 2wkq_A 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGA-----VKYLECSALTQRGLKTVFD 322 (332)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHHHHHHHTTC-----SEEEECCTTTCTTHHHHHH
T ss_pred ccchhhhccccccccccHHHHHHHHHHcCC-----cEEEEecCCCCcCHHHHHH
Confidence 2111111110 01222333444432 3899999999999998643
No 163
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.60 E-value=6.5e-16 Score=156.14 Aligned_cols=152 Identities=18% Similarity=0.157 Sum_probs=95.6
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC-e
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET-T 160 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~ 160 (513)
...|+++|.+|+|||||+++|......+ ......|.......+...+ .
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i-------------------------------~~~~ftTl~p~~g~v~~~~~~ 206 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKI-------------------------------ADYHFTTLVPNLGMVETDDGR 206 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEE-------------------------------SSTTSSCCCCCEEEEECSSSC
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCcc-------------------------------ccCCccccCceEEEEEeCCCc
Confidence 4579999999999999999984321110 0112334443344455554 7
Q ss_pred EEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-----cCCCeEEEEEe
Q 010318 161 RFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-----LGVTKLLLVVN 228 (513)
Q Consensus 161 ~i~liDtPGh~~-------f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-----~~ip~~ivviN 228 (513)
.+.|+||||+.. +....++.+..+|++|+|+|++.......+ .+....+..+.. .++| +++|+|
T Consensus 207 ~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~---~~~~~~~~eL~~~~~~l~~~p-~ilV~N 282 (342)
T 1lnz_A 207 SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPY---DDYLTINQELSEYNLRLTERP-QIIVAN 282 (342)
T ss_dssp EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHH---HHHHHHHHHHHHSCSSTTTSC-BCBEEE
T ss_pred eEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChH---HHHHHHHHHHHHhhhhhcCCC-EEEEEE
Confidence 899999999643 445566667789999999999752100001 122333444554 3677 889999
Q ss_pred eccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 229 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+|+. + ..+..+++. +.++. ..+++++||++|.|+.+++.
T Consensus 283 K~Dl~--~-~~e~~~~l~-------~~l~~----~~~v~~iSA~tg~gi~eL~~ 322 (342)
T 1lnz_A 283 KMDMP--E-AAENLEAFK-------EKLTD----DYPVFPISAVTREGLRELLF 322 (342)
T ss_dssp CTTST--T-HHHHHHHHH-------HHCCS----CCCBCCCSSCCSSTTHHHHH
T ss_pred CccCC--C-CHHHHHHHH-------HHhhc----CCCEEEEECCCCcCHHHHHH
Confidence 99993 2 122222222 22221 14799999999999999754
No 164
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.60 E-value=4.3e-15 Score=151.53 Aligned_cols=155 Identities=17% Similarity=0.159 Sum_probs=96.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeE
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 161 (513)
.+.|+++|.+|+|||||+|+|.+.... .....+.|.+.....+..++..
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~-------------------------------~~~~~~~T~d~~~~~i~~~g~~ 227 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQK-------------------------------VDTKLFTTMSPKRYAIPINNRK 227 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC------------------------------------------CCSCEEEEEETTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCcc-------------------------------ccCCcccccCCEEEEEEECCEE
Confidence 455999999999999999999432110 0111455666666667778889
Q ss_pred EEEEeCCCCcch--------HHHHHHhhhhcCEEEEEEECCCCc--ccccccCCcchHHHHHHHHH---cCCCeEEEEEe
Q 010318 162 FTILDAPGHKSY--------VPNMISGASQADIGVLVISARKGE--FETGFEKGGQTREHVMLAKT---LGVTKLLLVVN 228 (513)
Q Consensus 162 i~liDtPGh~~f--------~~~~~~~~~~~D~~ilVVda~~g~--~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviN 228 (513)
+.++||||+... .+.+...+..+|++++|+|++++. .+ .+......++.. .+.| +|+|.|
T Consensus 228 v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~------~~~~~~~~~L~~l~~~~~p-~ilV~N 300 (364)
T 2qtf_A 228 IMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLI------ETLQSSFEILREIGVSGKP-ILVTLN 300 (364)
T ss_dssp EEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHH------HHHHHHHHHHHHHTCCSCC-EEEEEE
T ss_pred EEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHH------HHHHHHHHHHHHhCcCCCC-EEEEEE
Confidence 999999997221 234555678999999999998763 11 122222334444 3567 899999
Q ss_pred eccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 229 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+|+.... . .+....+..+...++. ...+++|+||++|.|+.++.+
T Consensus 301 K~Dl~~~~--~---~~~~~~~~~l~~~l~~---~~~~~~~~SA~~g~gi~~L~~ 346 (364)
T 2qtf_A 301 KIDKINGD--L---YKKLDLVEKLSKELYS---PIFDVIPISALKRTNLELLRD 346 (364)
T ss_dssp CGGGCCSC--H---HHHHHHHHHHHHHHCS---CEEEEEECBTTTTBSHHHHHH
T ss_pred CCCCCCch--H---HHHHHHHHHHHHHhcC---CCCcEEEEECCCCcCHHHHHH
Confidence 99994322 1 1112222222232211 134789999999999998644
No 165
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.59 E-value=6.4e-15 Score=141.57 Aligned_cols=159 Identities=15% Similarity=0.181 Sum_probs=93.8
Q ss_pred CCcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe
Q 010318 78 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET 157 (513)
Q Consensus 78 ~~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 157 (513)
...+.++|+++|++|+|||||+++|+....... .....++|.......+.+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~ 75 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHS-----------------------------GTAAKSITKKCEKRSSSW 75 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC------------------------------------CCSCEEEEEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCcc-----------------------------CCCCCceeeeEEEEEEEe
Confidence 345679999999999999999999964322100 011135666666677888
Q ss_pred CCeEEEEEeCCCCc-----------chHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-----HcCCC
Q 010318 158 ETTRFTILDAPGHK-----------SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-----TLGVT 221 (513)
Q Consensus 158 ~~~~i~liDtPGh~-----------~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-----~~~ip 221 (513)
.+..+.|+||||+. .+.+.+......+|++|+|+|+.... ....+.+..+. ....|
T Consensus 76 ~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~--------~~~~~~l~~~~~~~~~~~~~~ 147 (239)
T 3lxx_A 76 KETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT--------EEEHKATEKILKMFGERARSF 147 (239)
T ss_dssp TTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS--------SHHHHHHHHHHHHHHHHHGGG
T ss_pred CCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC--------HHHHHHHHHHHHHhhhhccce
Confidence 89999999999954 34444445556789999999987431 23444444332 23447
Q ss_pred eEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccc-----ccccccc
Q 010318 222 KLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLM-----GLNMKTR 280 (513)
Q Consensus 222 ~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~-----g~gi~~l 280 (513)
+++|+||+|+.....-.+.+....+.+..+++.++. .++++++.. +.++.+|
T Consensus 148 -~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~------~~~~~~~~~~~~~~~~~v~~l 204 (239)
T 3lxx_A 148 -MILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD------RYCALNNKATGAEQEAQRAQL 204 (239)
T ss_dssp -EEEEEECGGGC------------CHHHHHHHHHHSS------SEEECCTTCCHHHHHHHHHHH
T ss_pred -EEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC------EEEEEECCCCccccHHHHHHH
Confidence 899999999843211111111112345666666654 356665543 3566664
No 166
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.59 E-value=3.1e-15 Score=141.22 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=86.6
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|....-... . .. ...|+.. ...
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-----------------------~-----~~--~~~~~~~-----~~~ 53 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-----------------------V-----VS--QEPLSAA-----DYD 53 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-----------------------C-----CC--SSCEEET-----TGG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-----------------------e-----ee--cCceEEE-----Eee
Confidence 34568999999999999999999954321000 0 00 1111111 114
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhh----cCEEEEEEECC-CCcccccccCCcchHHHHHHH-HH------cCCCeEEEE
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQ----ADIGVLVISAR-KGEFETGFEKGGQTREHVMLA-KT------LGVTKLLLV 226 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~----~D~~ilVVda~-~g~~e~~~~~~~qt~e~l~~~-~~------~~ip~~ivv 226 (513)
...+.|+||||+++|...+...++. +|++|+|+|+. ... .+. ...+.+..+ .. .++| +++|
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv 126 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK---KLT---TTAEFLVDILSITESSCENGID-ILIA 126 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTT---CCH---HHHHHHHHHHHHHHHHSTTCCC-EEEE
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChH---HHH---HHHHHHHHHHhcccccccCCCC-EEEE
Confidence 6789999999999997777777666 99999999998 221 011 222333222 21 3788 9999
Q ss_pred EeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccc
Q 010318 227 VNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNM 277 (513)
Q Consensus 227 iNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi 277 (513)
+||+|+..........+.+.+++..+....+ .+++++||++|.+-
T Consensus 127 ~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~Sa~~~~~~ 171 (218)
T 1nrj_B 127 CNKSELFTARPPSKIKDALESEIQKVIERRK------KSLNEVERKINEED 171 (218)
T ss_dssp EECTTSTTCCCHHHHHHHHHHHHHHHHHHHH------HHHHC---------
T ss_pred EEchHhcccCCHHHHHHHHHHHHHHHHHHHh------cccccccccccccc
Confidence 9999995443222233333444444444332 46899999999864
No 167
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.57 E-value=2.3e-14 Score=140.34 Aligned_cols=118 Identities=12% Similarity=0.047 Sum_probs=78.7
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+|+|++...... ....+.|.......+...
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~ 85 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSI------------------------------SPFQSEGPRPVMVSRSRA 85 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCC------------------------------CSSSCCCSSCEEEEEEET
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCcccc------------------------------cCCCCcceeeEEEEEeeC
Confidence 34679999999999999999999964321110 011344444445567778
Q ss_pred CeEEEEEeCCCCcchH---HHHHHh------hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-C----CCeEE
Q 010318 159 TTRFTILDAPGHKSYV---PNMISG------ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-G----VTKLL 224 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~---~~~~~~------~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~-~----ip~~i 224 (513)
+..++|+||||+.+|. ...... ...+|++|+|+|++...+ .....+.+..+... + .| +|
T Consensus 86 ~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~------~~~~~~~~~~l~~~~~~~~~~~-ii 158 (270)
T 1h65_A 86 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRV------DNLDKLVAKAITDSFGKGIWNK-AI 158 (270)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCC------CHHHHHHHHHHHHHHCGGGGGG-EE
T ss_pred CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcC------CHHHHHHHHHHHHHhCcccccC-EE
Confidence 8999999999997763 222222 236999999998865322 12344555555433 4 46 99
Q ss_pred EEEeeccCC
Q 010318 225 LVVNKMDDH 233 (513)
Q Consensus 225 vviNK~D~~ 233 (513)
+|+||+|+.
T Consensus 159 vV~nK~Dl~ 167 (270)
T 1h65_A 159 VALTHAQFS 167 (270)
T ss_dssp EEEECCSCC
T ss_pred EEEECcccC
Confidence 999999984
No 168
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.57 E-value=5.7e-15 Score=135.78 Aligned_cols=160 Identities=11% Similarity=0.151 Sum_probs=91.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEE-----
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE----- 156 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~----- 156 (513)
..+|+++|.+|+|||||+++|......... .....+.++.....+.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~-----------------------------~~~~t~g~~~~~~~~~~~~~~ 52 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLG-----------------------------MQSATVGIDVKDWPIQIRDKR 52 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC----------------------------------------CSEEEEEEEC------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCC-----------------------------CcceeccEEeEEeeeccccCC
Confidence 368999999999999999998432111000 0001111222222221
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCC
Q 010318 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 157 ~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~ 234 (513)
.....+.++||||+++|.......++.+|++++|+|.+.+.. .+. .....+..+.. .++| +|+|.||+|+.
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--s~~---~~~~~~~~~~~~~~~~p-iilv~nK~Dl~- 125 (184)
T 2zej_A 53 KRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQA--EVD---AMKPWLFNIKARASSSP-VILVGTHLDVS- 125 (184)
T ss_dssp ---CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHH--HHH---THHHHHHHHHHHCTTCE-EEEEEECGGGC-
T ss_pred CCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchh--HHH---HHHHHHHHHHhhCCCCc-EEEEEECCCcc-
Confidence 135689999999999887766666778999999999987520 011 22233333332 2677 88899999983
Q ss_pred CCchHHHHHHH-HhhhHhhhhhccCcccCCeeEEEeeccccc-ccccccc
Q 010318 235 VNWSKERYDEI-ESKMTPFLKASGYNVKKDVQFLPISGLMGL-NMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i-~~~l~~~l~~~g~~~~~~~~iipiSa~~g~-gi~~l~~ 282 (513)
+ ....... ......+.+..++. ...+++++||++|. |+.++.+
T Consensus 126 -~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~~~~~l~~ 170 (184)
T 2zej_A 126 -D--EKQRKACMSKITKELLNKRGFP--AIRDYHFVNATEESDALAKLRK 170 (184)
T ss_dssp -C--HHHHHHHHHHHHHHTTTCTTSC--EEEEEEECCTTSCCHHHHHHHH
T ss_pred -c--chhhHHHHHHHHHHHHHhcCCc--chhheEEEecccCchhHHHHHH
Confidence 2 1111111 12222333334432 01248999999996 9888643
No 169
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.55 E-value=1.1e-14 Score=142.19 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=80.2
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
..+.++|+++|++|+|||||+++|++...... ....+.|.......+.++
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~ 82 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRV------------------------------SPFQAEGLRPVMVSRTMG 82 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTSCCSCC------------------------------CSSCC-CCCCEEEEEEET
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCccc------------------------------CCCCCcceeeEEEEEEEC
Confidence 35679999999999999999999965332111 112455666666777889
Q ss_pred CeEEEEEeCCCCcchHH---HHHHhh------hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-C----CCeEE
Q 010318 159 TTRFTILDAPGHKSYVP---NMISGA------SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-G----VTKLL 224 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~---~~~~~~------~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~-~----ip~~i 224 (513)
+..++|+|||||.+|.. ...+.+ ..+|++|+|+|++...+ .....+.+..+... + .| ++
T Consensus 83 ~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~------~~~~~~~~~~l~~~~~~~~~~~-~i 155 (262)
T 3def_A 83 GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAV------DELDKQVVIAITQTFGKEIWCK-TL 155 (262)
T ss_dssp TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCC------CHHHHHHHHHHHHHHCGGGGGG-EE
T ss_pred CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCC------CHHHHHHHHHHHHHhchhhhcC-EE
Confidence 99999999999987722 111212 27899999998876422 12334455545443 3 25 89
Q ss_pred EEEeeccCC
Q 010318 225 LVVNKMDDH 233 (513)
Q Consensus 225 vviNK~D~~ 233 (513)
+++||+|+.
T Consensus 156 vv~nK~Dl~ 164 (262)
T 3def_A 156 LVLTHAQFS 164 (262)
T ss_dssp EEEECTTCC
T ss_pred EEEeCcccC
Confidence 999999984
No 170
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.54 E-value=1.6e-14 Score=147.37 Aligned_cols=153 Identities=20% Similarity=0.272 Sum_probs=95.7
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+++|.+|+|||||+++|...... .....+.|.+.....+...+
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~-------------------------------~~~~~~~t~~~~~~~~~~~~ 213 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE-------------------------------IASYPFTTRGINVGQFEDGY 213 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE-------------------------------EECCTTCSSCEEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-------------------------------cCCCCCeeeceeEEEEEecC
Confidence 46689999999999999999999432110 00112334344444556678
Q ss_pred eEEEEEeCCCCcchH--------HHHHHh-hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-c-CCCeEEEEEe
Q 010318 160 TRFTILDAPGHKSYV--------PNMISG-ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-L-GVTKLLLVVN 228 (513)
Q Consensus 160 ~~i~liDtPGh~~f~--------~~~~~~-~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-~-~ip~~ivviN 228 (513)
..+.++||||+.++. .....+ ...+|.+|+|+|++.+. +++.. ...+.+..+.. . +.| +|+|+|
T Consensus 214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~---~~~~~-~~~~~~~~i~~~~~~~p-iilV~N 288 (357)
T 2e87_A 214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHC---GFPLE-EQIHLFEEVHGEFKDLP-FLVVIN 288 (357)
T ss_dssp EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTT---SSCHH-HHHHHHHHHHHHTTTSC-EEEEEC
T ss_pred ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccc---cCCHH-HHHHHHHHHHHhcCCCC-EEEEEE
Confidence 899999999986541 122223 34699999999987642 01111 11223333332 3 788 999999
Q ss_pred eccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 229 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+|+. + ...++ ++..++... .++++++||++|+|++++++
T Consensus 289 K~Dl~--~--~~~~~----~~~~~~~~~------~~~~~~iSA~~g~gi~~l~~ 328 (357)
T 2e87_A 289 KIDVA--D--EENIK----RLEKFVKEK------GLNPIKISALKGTGIDLVKE 328 (357)
T ss_dssp CTTTC--C--HHHHH----HHHHHHHHT------TCCCEECBTTTTBTHHHHHH
T ss_pred CcccC--C--hHHHH----HHHHHHHhc------CCCeEEEeCCCCcCHHHHHH
Confidence 99993 2 11222 222333332 35799999999999999755
No 171
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.54 E-value=2.5e-14 Score=134.97 Aligned_cols=155 Identities=19% Similarity=0.168 Sum_probs=90.1
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
.....+|+++|.+|+|||||+++|......+.... ...|.+.. ...+..+
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~----------------------------~~~g~d~~--~~~i~~~ 83 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC----------------------------EVLGEDTY--ERTLMVD 83 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC-------------------------------CCTTEE--EEEEEET
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC----------------------------CccceeeE--EEEEEEC
Confidence 34568999999999999999999853222111100 00222211 1223344
Q ss_pred C--eEEEEEeCCCCcch-HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeecc
Q 010318 159 T--TRFTILDAPGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMD 231 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f-~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D 231 (513)
+ ..+.++||+|.+.. ........+.+|++|+|+|.+.... |+ ...+.+..+.. .++| +|+|.||+|
T Consensus 84 ~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~s---f~---~~~~~~~~l~~~~~~~~~p-iilVgNK~D 156 (211)
T 2g3y_A 84 GESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRAS---FE---KASELRIQLRRARQTEDIP-IILVGNKSD 156 (211)
T ss_dssp TEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHH---HH---HHHHHHHHHHTSGGGTTSC-EEEEEECTT
T ss_pred CeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHH---HH---HHHHHHHHHHHHhCCCCCc-EEEEEEChH
Confidence 4 45688999998873 2222233567999999999886311 11 12222222332 2678 999999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+.... ....+ +...+.... .++++++||++|.|+.++++
T Consensus 157 L~~~r--~v~~~----e~~~~a~~~------~~~~~e~SAk~g~~v~elf~ 195 (211)
T 2g3y_A 157 LVRCR--EVSVS----EGRACAVVF------DCKFIETSAAVQHNVKELFE 195 (211)
T ss_dssp CGGGC--CSCHH----HHHHHHHHH------TCEEEECBTTTTBSHHHHHH
T ss_pred HhcCc--eEeHH----HHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 84211 00011 111122222 25799999999999999754
No 172
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.54 E-value=4.2e-14 Score=132.44 Aligned_cols=156 Identities=16% Similarity=0.160 Sum_probs=94.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
-.+..+|+++|++|+|||||+++|.+.... . ......|.|...+.. ...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~--~---------------------------~~~~~~G~~~~~~~~--~~~ 71 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSL--A---------------------------RTSKTPGRTQLINLF--EVA 71 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC------------------------------------------CCEEEE--EEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCcc--c---------------------------cccCCCccceeeEEE--Eec
Confidence 345578999999999999999998422100 0 000114444433322 222
Q ss_pred CeEEEEEeCCCCcc----------hHH---HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEE
Q 010318 159 TTRFTILDAPGHKS----------YVP---NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 225 (513)
Q Consensus 159 ~~~i~liDtPGh~~----------f~~---~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~iv 225 (513)
+ .+.++||||+.. |.. ........+|.+++|+|+..+.. ....+...++...++| +++
T Consensus 72 ~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-------~~~~~~~~~~~~~~~~-~~~ 142 (210)
T 1pui_A 72 D-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-------DLDQQMIEWAVDSNIA-VLV 142 (210)
T ss_dssp T-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-------HHHHHHHHHHHHTTCC-EEE
T ss_pred C-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-------hhHHHHHHHHHHcCCC-eEE
Confidence 3 688999999843 222 22222357899999999988632 2333455666778899 788
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 226 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 226 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+.||+|+. + ....+.....+..++.+.+. .+.++|+||+++.|+.++.+
T Consensus 143 v~nK~D~~--s--~~~~~~~~~~~~~~~~~~~~----~~~~~~~Sal~~~~~~~l~~ 191 (210)
T 1pui_A 143 LLTKADKL--A--SGARKAQLNMVREAVLAFNG----DVQVETFSSLKKQGVDKLRQ 191 (210)
T ss_dssp EEECGGGS--C--HHHHHHHHHHHHHHHGGGCS----CEEEEECBTTTTBSHHHHHH
T ss_pred EEecccCC--C--chhHHHHHHHHHHHHHhcCC----CCceEEEeecCCCCHHHHHH
Confidence 99999983 2 11112223344445544432 36889999999999998543
No 173
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.53 E-value=8.5e-15 Score=157.42 Aligned_cols=153 Identities=18% Similarity=0.223 Sum_probs=95.5
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEee------e
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVG------R 152 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~------~ 152 (513)
..+..+|+++|.+|+|||||+++|.... .... .....|.++... .
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~--~~~~---------------------------~~~t~g~~~~~~~~~~~~~ 88 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGET--FDPK---------------------------ESQTHGLNVVTKQAPNIKG 88 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC----------------------------------------CCCEEEEEGGGSGG
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCC--CCCC---------------------------CCCccceEEEEeccccccc
Confidence 4567999999999999999999995321 1000 000012221110 0
Q ss_pred EEE--EeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC--CCeEEEEEe
Q 010318 153 AHF--ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVN 228 (513)
Q Consensus 153 ~~~--~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~--ip~~ivviN 228 (513)
..+ ...+..+.|+||||++.|.......++.+|++|+|+|++.. ......+..+..++ .| +|+|+|
T Consensus 89 v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---------~~~~~~~~~l~~~~~~~p-vilV~N 158 (535)
T 3dpu_A 89 LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---------SNKHYWLRHIEKYGGKSP-VIVVMN 158 (535)
T ss_dssp GTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---------GGHHHHHHHHHHHSSSCC-EEEEEC
T ss_pred eeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---------hhHHHHHHHHHHhCCCCC-EEEEEE
Confidence 001 12357899999999999987777778889999999999764 25556666666655 88 899999
Q ss_pred eccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 229 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+|+.... ... .+++...+...+ .+++++||++|.|+.++++
T Consensus 159 K~Dl~~~~--~v~----~~~~~~~~~~~~------~~~~~vSA~~g~gi~eL~~ 200 (535)
T 3dpu_A 159 KIDENPSY--NIE----QKKINERFPAIE------NRFHRISCKNGDGVESIAK 200 (535)
T ss_dssp CTTTCTTC--CCC----HHHHHHHCGGGT------TCEEECCC-----CTTHHH
T ss_pred CCCccccc--ccC----HHHHHHHHHhcC------CceEEEecCcccCHHHHHH
Confidence 99994321 101 122333344443 4799999999999998754
No 174
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.53 E-value=1e-14 Score=145.93 Aligned_cols=69 Identities=12% Similarity=0.146 Sum_probs=51.5
Q ss_pred CCeEEEEEeCCCCcc-------------hHHHHHHhhhhcCEEEEEEEC-CCCcccccccCCcch-HHHHHHHHHcCCCe
Q 010318 158 ETTRFTILDAPGHKS-------------YVPNMISGASQADIGVLVISA-RKGEFETGFEKGGQT-REHVMLAKTLGVTK 222 (513)
Q Consensus 158 ~~~~i~liDtPGh~~-------------f~~~~~~~~~~~D~~ilVVda-~~g~~e~~~~~~~qt-~e~l~~~~~~~ip~ 222 (513)
....++|+||||+.+ +...+..++..+|++|+|+|+ +.+.. .+. ...+..+...+.|
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~-------~~~~~~i~~~~~~~~~~- 200 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA-------NSDALQLAKEVDPEGKR- 200 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST-------TCSHHHHHHHHCSSCSS-
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh-------hhHHHHHHHHhCCCCCc-
Confidence 457899999999864 556666778899999999997 44421 233 3566666667888
Q ss_pred EEEEEeeccCCC
Q 010318 223 LLLVVNKMDDHT 234 (513)
Q Consensus 223 ~ivviNK~D~~~ 234 (513)
+|+|+||+|+..
T Consensus 201 ~i~v~NK~Dl~~ 212 (315)
T 1jwy_B 201 TIGVITKLDLMD 212 (315)
T ss_dssp EEEEEECTTSSC
T ss_pred EEEEEcCcccCC
Confidence 899999999953
No 175
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.53 E-value=1.5e-14 Score=143.51 Aligned_cols=107 Identities=12% Similarity=0.024 Sum_probs=67.9
Q ss_pred CeEEEEEeCCCCc-------------chHHHHHHhhhhcCEEE-EEEECCCCcccccccCCcchH-HHHHHHHHcCCCeE
Q 010318 159 TTRFTILDAPGHK-------------SYVPNMISGASQADIGV-LVISARKGEFETGFEKGGQTR-EHVMLAKTLGVTKL 223 (513)
Q Consensus 159 ~~~i~liDtPGh~-------------~f~~~~~~~~~~~D~~i-lVVda~~g~~e~~~~~~~qt~-e~l~~~~~~~ip~~ 223 (513)
...++|+||||+. .+...+...+..+|.+| +|+|++.+.. .+.. ..+..+...+.| +
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~-------~~~~~~~~~~~~~~~~~-~ 195 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDALKIAKEVDPQGQR-T 195 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGG-------GCHHHHHHHHHCTTCSS-E
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchh-------hhHHHHHHHHhCCCCCe-E
Confidence 4789999999964 34445556677888776 6899988742 2432 345555556788 8
Q ss_pred EEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 224 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 224 ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+|+||+|+.... .... +.+...+..+.. ...+++++||++|.|+.++++
T Consensus 196 i~V~NK~Dl~~~~--~~~~----~~~~~~~~~~~~---~~~~v~~~SA~~~~gi~~l~~ 245 (299)
T 2aka_B 196 IGVITKLDLMDEG--TDAR----DVLENKLLPLRR---GYIGVVNRSQKDIDGKKDITA 245 (299)
T ss_dssp EEEEECGGGSCTT--CCCH----HHHTTCSSCCTT---CEEECCCCCCBCTTSCBCHHH
T ss_pred EEEEEccccCCCC--chHH----HHHhCCcCcCCC---CcEEEECCChhhccccccHHH
Confidence 9999999994321 1011 111111111110 124789999999999998754
No 176
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.53 E-value=5.4e-14 Score=130.40 Aligned_cols=154 Identities=19% Similarity=0.160 Sum_probs=87.7
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+++|.+|+|||||+++|......+.... ...|.+.. ...+..++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~----------------------------~~~~~~~~--~~~~~~~~ 53 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX----------------------------EVLGEDTY--ERTLMVDG 53 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC--------------------------------GGGCTTEE--EEEEEETT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc----------------------------cccceeEE--EEEEEECC
Confidence 3468999999999999999999965433222110 00122211 12233444
Q ss_pred --eEEEEEeCCCCcch-HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccC
Q 010318 160 --TRFTILDAPGHKSY-VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 232 (513)
Q Consensus 160 --~~i~liDtPGh~~f-~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~ 232 (513)
..+.++||+|.... ........+.+|++|+|+|.++... |+ ...+.+..+.. .++| +|+|.||+|+
T Consensus 54 ~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s---~~---~~~~~~~~l~~~~~~~~~p-iilV~NK~Dl 126 (192)
T 2cjw_A 54 ESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRAS---FE---KASELRIQLRRARQTEDIP-IILVGNKSDL 126 (192)
T ss_dssp EEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHH---HH---HHHHHHHHHHHHTTTSCCC-EEEEEECTTC
T ss_pred eEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHH---HH---HHHHHHHHHHHhhCCCCCe-EEEEEechhh
Confidence 35678999997652 1112233567999999999986321 11 12222222332 2678 9999999998
Q ss_pred CCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 233 HTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 233 ~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.... ....+ +...+.... +++++++||++|.|+.++++
T Consensus 127 ~~~r--~v~~~----~~~~~a~~~------~~~~~e~SA~~g~~v~~lf~ 164 (192)
T 2cjw_A 127 VRXR--EVSVS----EGRAXAVVF------DXKFIETSAAVQHNVKELFE 164 (192)
T ss_dssp GGGC--CSCHH----HHHHHHHHT------TCEEEECBTTTTBSHHHHHH
T ss_pred hccc--cccHH----HHHHHHHHh------CCceEEeccccCCCHHHHHH
Confidence 3210 00011 111111222 35799999999999999754
No 177
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.48 E-value=9e-14 Score=143.36 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=24.3
Q ss_pred eEEEEEeCCCCcch-------HHHHHHhhhhcCEEEEEEECCCC
Q 010318 160 TRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKG 196 (513)
Q Consensus 160 ~~i~liDtPGh~~f-------~~~~~~~~~~~D~~ilVVda~~g 196 (513)
..+.|+||||+.++ ....+..++.+|++++|+|+..+
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 57999999998643 12223456899999999999875
No 178
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.47 E-value=4.2e-14 Score=144.10 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=69.9
Q ss_pred EeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC
Q 010318 156 ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 156 ~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~ 235 (513)
...++.+.||||||...- ....+..+|++|+|+|+..+... +... ...+..| +++|+||+|+.
T Consensus 168 ~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~-------~~l~----~~~~~~p-~ivVlNK~Dl~-- 230 (355)
T 3p32_A 168 EAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQL-------QGIK----KGVLELA-DIVVVNKADGE-- 230 (355)
T ss_dssp HHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTT-------TTCC----TTSGGGC-SEEEEECCCGG--
T ss_pred hhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccH-------HHHH----HhHhhcC-CEEEEECCCCc--
Confidence 346789999999996543 22335889999999998776321 1110 0113457 78999999983
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcc-cCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~-~~~~~iipiSa~~g~gi~~l~~ 282 (513)
..........++...+...+... ....+++++||++|.|+.++.+
T Consensus 231 --~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~ 276 (355)
T 3p32_A 231 --HHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWD 276 (355)
T ss_dssp --GHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHH
T ss_pred --ChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHH
Confidence 22344455556665554442110 0135899999999999999755
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.47 E-value=1.3e-13 Score=152.09 Aligned_cols=114 Identities=19% Similarity=0.234 Sum_probs=70.4
Q ss_pred eEEEEEeCCCCcc---hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHH-HHHHcCCCeEEEEEeeccCCCC
Q 010318 160 TRFTILDAPGHKS---YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM-LAKTLGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 ~~i~liDtPGh~~---f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~-~~~~~~ip~~ivviNK~D~~~~ 235 (513)
..++||||||+.+ +...+...+..+|++|+|+|++.+.. ....+.+. .+...+.| +++|+||+|+...
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s-------~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCT-------LGERRYLENYIKGRGLT-VFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTC-------HHHHHHHHHHTTTSCCC-EEEEEECGGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccc-------hhHHHHHHHHHHhhCCC-EEEEEECcccccc
Confidence 4699999999765 34555667788999999999988732 23343332 34445778 8999999998422
Q ss_pred Cc-hH---HHHHHHHhhh----Hhhhhhc----cCcccCCeeEEEeecc--------------cccccccccc
Q 010318 236 NW-SK---ERYDEIESKM----TPFLKAS----GYNVKKDVQFLPISGL--------------MGLNMKTRVD 282 (513)
Q Consensus 236 ~~-~~---~~~~~i~~~l----~~~l~~~----g~~~~~~~~iipiSa~--------------~g~gi~~l~~ 282 (513)
.. +. +.++...+.+ ...+... |+. ....+++++||+ +|.|+.++.+
T Consensus 246 ~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~-~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~ 317 (695)
T 2j69_A 246 SLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQN-IYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMD 317 (695)
T ss_dssp GCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCB-CGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHH
T ss_pred cccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccc-cCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHH
Confidence 10 01 1222222222 2222221 111 013479999999 9999988644
No 180
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.47 E-value=1.9e-13 Score=127.19 Aligned_cols=152 Identities=17% Similarity=0.193 Sum_probs=94.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC-
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 159 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~- 159 (513)
..++|+++|+.|+|||||+++|.+..-... .....|..... ..+..++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~-----------------------------~~~t~~~~~~~--~~i~~~g~ 52 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLE-----------------------------SKSTIGVEFAT--RSIQVDGK 52 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC--------------------------------CCCSCEEEE--EEEEETTE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCC-----------------------------CCCccceeEEE--EEEEECCE
Confidence 358999999999999999999954321100 00012232222 3344444
Q ss_pred -eEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCCC
Q 010318 160 -TRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHTV 235 (513)
Q Consensus 160 -~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~~ 235 (513)
..+.|+||||++.|..........+|++++|+|+..... + ......+..+.. .+.| +++++||+|+...
T Consensus 53 ~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 53 TIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLT---Y---ENVERWLKELRDHADSNIV-IMLVGNKSDLRHL 125 (199)
T ss_dssp EEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHH---H---HTHHHHHHHHHHHSCTTCE-EEEEEECTTCGGG
T ss_pred EEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEECcccccc
Confidence 467889999999886655556678999999999886421 1 122222333332 2566 8999999998421
Q ss_pred CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 236 NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 236 ~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
..... .+...++... .+.++.+||+++.|+.++++
T Consensus 126 --~~~~~----~~a~~l~~~~------~~~~~d~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 126 --RAVPT----DEARAFAEKN------NLSFIETSALDSTNVEEAFK 160 (199)
T ss_dssp --CCSCH----HHHHHHHHHT------TCEEEECCTTTCTTHHHHHH
T ss_pred --cCcCH----HHHHHHHHHc------CCeEEEEeCCCCCCHHHHHH
Confidence 11111 1122333333 35789999999999998755
No 181
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.1e-13 Score=127.79 Aligned_cols=116 Identities=15% Similarity=0.180 Sum_probs=70.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|++|+|||||+++|...... . .. .....+++.+ +..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~--~-~~-------------------------~~~~~~~~~~-------~~~ 90 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVR--P-TV-------------------------VSQEPLSAAD-------YDG 90 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------------------C-------CCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC--c-cc-------------------------ccCCCceeee-------ecC
Confidence 45689999999999999999999543211 0 00 0000112211 156
Q ss_pred eEEEEEeCCCCcchHHHHHHhhh----hcCEEEEEEECCCCcccccccCCcchHHHHH-HHHH------cCCCeEEEEEe
Q 010318 160 TRFTILDAPGHKSYVPNMISGAS----QADIGVLVISARKGEFETGFEKGGQTREHVM-LAKT------LGVTKLLLVVN 228 (513)
Q Consensus 160 ~~i~liDtPGh~~f~~~~~~~~~----~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~-~~~~------~~ip~~ivviN 228 (513)
..+.|+||||+..|...+...+. .+|++|+|+|++.... .+. .....+. ++.. .++| +++|+|
T Consensus 91 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv~n 164 (193)
T 2ged_A 91 SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPK--KLT---TTAEFLVDILSITESSCENGID-ILIACN 164 (193)
T ss_dssp TTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHH--HHH---HHHHHHHHHHHHHHHHSTTCCC-EEEEEE
T ss_pred CeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCch--hHH---HHHHHHHHHHhhhhhccccCCC-EEEEEE
Confidence 78999999999888555544444 3899999999982210 010 1112222 2211 3788 999999
Q ss_pred eccCCCCC
Q 010318 229 KMDDHTVN 236 (513)
Q Consensus 229 K~D~~~~~ 236 (513)
|+|+....
T Consensus 165 K~Dl~~~~ 172 (193)
T 2ged_A 165 KSELFTAR 172 (193)
T ss_dssp CTTSTTCC
T ss_pred chHhcCCC
Confidence 99995443
No 182
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.45 E-value=1.2e-13 Score=137.57 Aligned_cols=180 Identities=14% Similarity=0.184 Sum_probs=103.5
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeEEE
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTRFT 163 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 163 (513)
+|+++|..++|||||+.++. .+. ... .....+.|+......+. ....+.
T Consensus 1 KIvllGdsgvGKTSLl~~~~--~~~-~~~---------------------------~~~~~~~Tig~~~~~v~-~~v~Lq 49 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVF--HNM-QPL---------------------------DTLYLESTSNPSLEHFS-TLIDLA 49 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHH--SCC-CSG---------------------------GGTTCCCCCSCCCEEEC-SSSCEE
T ss_pred CEEEECCCCCCHHHHHHHHH--cCC-CCC---------------------------ccceecCeeeeeeEEEc-cEEEEE
Confidence 47899999999999998652 111 110 00112344444333332 347899
Q ss_pred EEeCCCCcchHH---HHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH--cCCCeEEEEEeeccCCCCCch
Q 010318 164 ILDAPGHKSYVP---NMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT--LGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 164 liDtPGh~~f~~---~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~--~~ip~~ivviNK~D~~~~~~~ 238 (513)
|+||||+++|.. .+....+.++++|+|+|+++. +...++ ...+.+..+.. -++| ++++.||+|+...+..
T Consensus 50 IWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~-~~~~~~---~l~~~l~~~~~~~~~ip-illvgNK~DL~~~~~R 124 (331)
T 3r7w_B 50 VMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE-YINAIT---NLAMIIEYAYKVNPSIN-IEVLIHKVDGLSEDFK 124 (331)
T ss_dssp EEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC-TTHHHH---HHHHHHHHHHHHCTTCE-EEEECCCCCSSCSHHH
T ss_pred EEECCCchhccchhhhhhhhccCCCEEEEEEECCch-HHHHHH---HHHHHHHHHhhcCCCCc-EEEEEECcccCchhhh
Confidence 999999999953 345567899999999999876 321110 11222222222 3677 8999999999432211
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCC-CcchHHHHhhhc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWW-NGPCLFEALDRI 301 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~-~g~~L~~~l~~l 301 (513)
.+...++..+....+.+.++. ..+++|+.+||++ .|+.+.+......+. ..+.|...|+.+
T Consensus 125 ~~~~R~V~~~~~~~la~~~~~-~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~~~~le~~L~~~ 186 (331)
T 3r7w_B 125 VDAQRDIMQRTGEELLELGLD-GVQVSFYLTSIFD-HSIYEAFSRIVQKLIPELSFLENMLDNL 186 (331)
T ss_dssp HHHHHHHHHHHHHTTSSSSCS-CCCEEEECCCSSS-SHHHHHHHHHHTTSSTTHHHHHHHHTGG
T ss_pred hhHHHHhhHHHHHHHHhhccc-ccCceEEEeccCC-CcHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 122334444444444443321 1257999999998 588775432222222 223444555544
No 183
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.42 E-value=2.1e-13 Score=138.13 Aligned_cols=107 Identities=16% Similarity=0.068 Sum_probs=67.0
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010318 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 157 ~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 236 (513)
+.++.++|+||||+.++.... ...+|++|+|+|+..+.. .+.... ...++| .++|+||+|+..
T Consensus 146 ~~~~~i~liDTpG~~~~~~~~---~~~aD~vl~Vvd~~~~~~-------~~~l~~----~~~~~p-~ivv~NK~Dl~~-- 208 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETEV---ARMVDCFISLQIAGGGDD-------LQGIKK----GLMEVA-DLIVINKDDGDN-- 208 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHHH---HTTCSEEEEEECC-------------CCCCH----HHHHHC-SEEEECCCCTTC--
T ss_pred ccCCCEEEEeCCCccchHHHH---HHhCCEEEEEEeCCccHH-------HHHHHH----hhhccc-CEEEEECCCCCC--
Confidence 567899999999988765443 579999999999986631 111111 113567 788999999832
Q ss_pred chHHHHHHHHhhhHhhhhhccCc-ccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~-~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
...+....+++...+..++.. .....+++|+||++|.|+.++.+
T Consensus 209 --~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~ 253 (341)
T 2p67_A 209 --HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWH 253 (341)
T ss_dssp --HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHH
Confidence 223444444555444433210 00024799999999999998754
No 184
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.40 E-value=4.1e-13 Score=137.00 Aligned_cols=159 Identities=14% Similarity=0.228 Sum_probs=74.6
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+++|++|+|||||+++|+.. +...... .........+++++......+...+
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~-~~~~~~~---------------------~~~~~~~~~~ti~~~~~~~~~~~~~ 92 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLT-DLYPERV---------------------IPGAAEKIERTVQIEASTVEIEERG 92 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTC-CC------------------------------------CEEEEEEEEC----C
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCC-CCCCCCc---------------------ccCCCcccCCceeEEEEEEEeecCC
Confidence 34588999999999999999998432 1111110 0000011123333433333344444
Q ss_pred e--EEEEEeCCCC-------cchHH----------HHHHhhh----------hcCEEEEEEEC-CCCcccccccCCcchH
Q 010318 160 T--RFTILDAPGH-------KSYVP----------NMISGAS----------QADIGVLVISA-RKGEFETGFEKGGQTR 209 (513)
Q Consensus 160 ~--~i~liDtPGh-------~~f~~----------~~~~~~~----------~~D~~ilVVda-~~g~~e~~~~~~~qt~ 209 (513)
. .++++||||+ +.|.. ..++... .+|+++++|++ .++. .....
T Consensus 93 ~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l-------~~~d~ 165 (361)
T 2qag_A 93 VKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGL-------KPLDV 165 (361)
T ss_dssp EEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSC-------CHHHH
T ss_pred cccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCc-------chhHH
Confidence 3 7899999999 33321 2222221 13578888886 3332 12233
Q ss_pred HHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 210 EHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 210 e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
+.+..+ ..++| +|+|+||+|+.. .......+.++..++...+ ++++++||++|.| .+.
T Consensus 166 ~~~~~l-~~~~p-iIlV~NK~Dl~~----~~ev~~~k~~i~~~~~~~~------i~~~~~Sa~~~~~-~e~ 223 (361)
T 2qag_A 166 AFMKAI-HNKVN-IVPVIAKADTLT----LKERERLKKRILDEIEEHN------IKIYHLPDAESDE-DED 223 (361)
T ss_dssp HHHHHT-CS-SC-EEEEEECCSSSC----HHHHHHHHHHHHHHTTCC-------CCSCCCC----------
T ss_pred HHHHHh-ccCCC-EEEEEECCCCCC----HHHHHHHHHHHHHHHHHCC------CCEEeCCCcCCCc-chh
Confidence 333333 24688 999999999932 2334444456666666554 5789999999998 554
No 185
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.39 E-value=7e-13 Score=122.67 Aligned_cols=153 Identities=19% Similarity=0.194 Sum_probs=94.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
...++|+++|+.|+|||||+++|....-.. .....++.+.....+..++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~-------------------------------~~~~t~~~~~~~~~i~~~g 75 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNL-------------------------------ESKSTIGVEFATRSIQVDG 75 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCC-------------------------------SCCCCCSEEEEEEEEEETT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCC-------------------------------CCCCccceEEEEEEEEECC
Confidence 346899999999999999999985422110 0002222222233444555
Q ss_pred e--EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH---cCCCeEEEEEeeccCCC
Q 010318 160 T--RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT---LGVTKLLLVVNKMDDHT 234 (513)
Q Consensus 160 ~--~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~---~~ip~~ivviNK~D~~~ 234 (513)
. .+.++||||+++|...+....+.+|++++|+|...... ++ .....+..+.. .+.| +++++||+|+..
T Consensus 76 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~-i~~v~nK~Dl~~ 148 (191)
T 1oix_A 76 KTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLT---YE---NVERWLKELRDHADSNIV-IMLVGNKSDLRH 148 (191)
T ss_dssp EEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHH---HH---THHHHHHHHHHHSCTTCE-EEEEEECGGGGG
T ss_pred EEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHH---HH---HHHHHHHHHHHhcCCCCc-EEEEEECccccc
Confidence 4 45679999999887666666778999999999876421 10 12222222332 2456 899999999832
Q ss_pred CCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 235 VNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 235 ~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
. ..... .....+.... .+.++.+||+++.|+.++++
T Consensus 149 ~--~~~~~----~~a~~l~~~~------~~~~ld~Sald~~~v~~l~~ 184 (191)
T 1oix_A 149 L--RAVPT----DEARAFAEKN------GLSFIETSALDSTNVEAAFQ 184 (191)
T ss_dssp G--CCSCH----HHHHHHHHHT------TCEEEECCTTTCTTHHHHHH
T ss_pred c--cccCH----HHHHHHHHHc------CCEEEEEeCCCCCCHHHHHH
Confidence 1 11111 1222333333 35789999999999998543
No 186
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.37 E-value=1.4e-12 Score=132.46 Aligned_cols=107 Identities=17% Similarity=0.118 Sum_probs=60.4
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010318 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 157 ~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 236 (513)
..++.+.|+||||..... ......+|++++|+|+..|.. .+ .+.. ..+..| .++++||+|+. +
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~-------~~---~i~~-~il~~~-~ivVlNK~Dl~--~ 226 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDE-------LQ---GIKR-GIIEMA-DLVAVTKSDGD--L 226 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC-----------------------CCSC-SEEEECCCSGG--G
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchh-------HH---HhHH-HHHhcC-CEEEEeeecCC--C
Confidence 467889999999964221 223568999999999987621 11 1111 224667 67899999983 2
Q ss_pred chHHHHHHHHhhhHhhhhhccC-cccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGY-NVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~-~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
..........+...++.... ......+++++||++|.|+.++.+
T Consensus 227 --~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~ 271 (349)
T 2www_A 227 --IVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWD 271 (349)
T ss_dssp --HHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHH
T ss_pred --chhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHH
Confidence 11222223333333322110 000134799999999999998754
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.35 E-value=2.2e-12 Score=131.63 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=66.5
Q ss_pred CCeEEEEEeCCCCcch-------------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEE
Q 010318 158 ETTRFTILDAPGHKSY-------------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLL 224 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f-------------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~i 224 (513)
....++|+||||..++ ...+...+..+|++|||+|+..... ......+.+..+...+.| +|
T Consensus 134 ~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~-----~~~~~~~l~~~~~~~~~~-~i 207 (360)
T 3t34_A 134 NVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDL-----ATSDAIKISREVDPSGDR-TF 207 (360)
T ss_dssp TSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCG-----GGCHHHHHHHHSCTTCTT-EE
T ss_pred CCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCc-----CCHHHHHHHHHhcccCCC-EE
Confidence 3568999999998876 5556667789999999998654221 011223333333345677 89
Q ss_pred EEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 225 LVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 225 vviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+|+||+|+.... .... .+ +...... ...+++++|+.++.++.+..
T Consensus 208 ~V~nK~Dl~~~~--~~~~-~~---~~~~~~~------~~~~~~~v~~~s~~~i~~~~ 252 (360)
T 3t34_A 208 GVLTKIDLMDKG--TDAV-EI---LEGRSFK------LKYPWVGVVNRSQADINKNV 252 (360)
T ss_dssp EEEECGGGCCTT--CCSH-HH---HTTSSSC------CSSCCEEECCCCHHHHHTTC
T ss_pred EEEeCCccCCCc--ccHH-HH---HcCcccc------ccCCeEEEEECChHHhccCC
Confidence 999999994321 1111 11 1111111 13578999999999987653
No 188
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.33 E-value=2.7e-12 Score=137.76 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=58.9
Q ss_pred eEEEEEeCCCCcc-----------hHHHHHHhhhhcCEEEEEEECCC-CcccccccCCcchHHHHHHHHHcCCCeEEEEE
Q 010318 160 TRFTILDAPGHKS-----------YVPNMISGASQADIGVLVISARK-GEFETGFEKGGQTREHVMLAKTLGVTKLLLVV 227 (513)
Q Consensus 160 ~~i~liDtPGh~~-----------f~~~~~~~~~~~D~~ilVVda~~-g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivvi 227 (513)
..++||||||+.+ |...+...+..+|++|+|+|++. +.. .++.+++..+...+.| +++|+
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~-------~~~~~~l~~l~~~~~p-vilVl 225 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEIS-------DEFSEAIGALRGHEDK-IRVVL 225 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCC-------HHHHHHHHHTTTCGGG-EEEEE
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCC-------HHHHHHHHHHHhcCCC-EEEEE
Confidence 4699999999876 66777777899999999999987 322 4566777777767778 89999
Q ss_pred eeccCCCCCchHHHHHHHHhhhH
Q 010318 228 NKMDDHTVNWSKERYDEIESKMT 250 (513)
Q Consensus 228 NK~D~~~~~~~~~~~~~i~~~l~ 250 (513)
||+|+ .+ ...+.++...+.
T Consensus 226 NK~Dl--~~--~~el~~~~~~l~ 244 (550)
T 2qpt_A 226 NKADM--VE--TQQLMRVYGALM 244 (550)
T ss_dssp ECGGG--SC--HHHHHHHHHHHH
T ss_pred ECCCc--cC--HHHHHHHHHHhh
Confidence 99999 32 334444544443
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.33 E-value=6.8e-12 Score=127.65 Aligned_cols=107 Identities=12% Similarity=0.020 Sum_probs=62.5
Q ss_pred CeEEEEEeCCCCcc-------------hHHHHHHhhhhc-CEEEEEEECCCCcccccccCCcchH-HHHHHHHHcCCCeE
Q 010318 159 TTRFTILDAPGHKS-------------YVPNMISGASQA-DIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTLGVTKL 223 (513)
Q Consensus 159 ~~~i~liDtPGh~~-------------f~~~~~~~~~~~-D~~ilVVda~~g~~e~~~~~~~qt~-e~l~~~~~~~ip~~ 223 (513)
...++|+||||..+ +...+...+..+ +++++|+|++.+.. .+.. +.+..+...+.| +
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~-------~~~~~~i~~~~~~~~~~-~ 200 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDALKVAKEVDPQGQR-T 200 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGG-------GCHHHHHHHHHCTTCTT-E
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccc-------hhHHHHHHHHhCcCCCc-e
Confidence 57899999999632 333334445444 56666778876532 2332 244445556788 8
Q ss_pred EEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 224 LLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 224 ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
|+|+||+|+.... .. ...+.+ ..+..+.. ...+++++||++|.|+.++.+
T Consensus 201 i~V~NK~Dl~~~~--~~-~~~~~~---~~~~~l~~---~~~~v~~~SA~~~~~i~~l~~ 250 (353)
T 2x2e_A 201 IGVITKLDLMDEG--TD-ARDVLE---NKLLPLRR---GYIGVVNRSQKDIDGKKDITA 250 (353)
T ss_dssp EEEEECGGGSCTT--CC-CHHHHT---TCSSCCTT---CEEECCCCCHHHHHTTCCHHH
T ss_pred EEEeccccccCcc--hh-HHHHHh---CCcccccC---CceEEEeCCcccccccccHHH
Confidence 9999999994321 10 111111 11111100 124789999999999988654
No 190
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.32 E-value=1.8e-12 Score=125.74 Aligned_cols=82 Identities=17% Similarity=0.174 Sum_probs=49.6
Q ss_pred hcCEEEEEEECCCCcccccccCCcchHHHHHHHH----HcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccC
Q 010318 183 QADIGVLVISARKGEFETGFEKGGQTREHVMLAK----TLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 258 (513)
Q Consensus 183 ~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~----~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 258 (513)
.+|++|+|+|+++... ..|+ .....+..+. ..++| +|+|.||+|+ .+ +... ++...+....
T Consensus 162 ~ad~vilV~D~t~~~~-~s~~---~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl--~~--~~~v----~~~~~~~~~~-- 226 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMN-RNFD---DQLKFVSNLYNQLAKTKKP-IVVVLTKCDE--GV--ERYI----RDAHTFALSK-- 226 (255)
T ss_dssp ECCEEEEEEECBC-----CHH---HHHHHHHHHHHHHHHTTCC-EEEEEECGGG--BC--HHHH----HHHHHHHHTS--
T ss_pred cCCEEEEEEECCCCch-hhHH---HHHHHHHHHHHHhccCCCC-EEEEEEcccc--cc--cHHH----HHHHHHHHhc--
Confidence 5899999999987400 0111 2222332222 24788 9999999998 32 1112 2333333332
Q ss_pred cccCCeeEEEeecccccccccccc
Q 010318 259 NVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 259 ~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
..++++++||++|.|+.++++
T Consensus 227 ---~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 227 ---KNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp ---SSCCEEECBTTTTBSHHHHHH
T ss_pred ---CCCeEEEEECCCCCCHHHHHH
Confidence 135799999999999998643
No 191
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.32 E-value=1.4e-12 Score=143.09 Aligned_cols=107 Identities=13% Similarity=0.075 Sum_probs=68.6
Q ss_pred CCeEEEEEeCCCCcc-------------hHHHHHHhh-hhcCEEEEEEECCCCcccccccCCcchH-HHHHHHHHcCCCe
Q 010318 158 ETTRFTILDAPGHKS-------------YVPNMISGA-SQADIGVLVISARKGEFETGFEKGGQTR-EHVMLAKTLGVTK 222 (513)
Q Consensus 158 ~~~~i~liDtPGh~~-------------f~~~~~~~~-~~~D~~ilVVda~~g~~e~~~~~~~qt~-e~l~~~~~~~ip~ 222 (513)
....++|+||||... +-..+...+ ..+|++++|+||+.+.. .+.. +.+..+...+.|
T Consensus 148 ~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~-------~~d~l~ll~~L~~~g~p- 219 (772)
T 3zvr_A 148 HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA-------NSDALKIAKEVDPQGQR- 219 (772)
T ss_dssp TCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSS-------SCHHHHHHHHHCTTCSS-
T ss_pred CCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcc-------hhHHHHHHHHHHhcCCC-
Confidence 345799999999543 122222333 47899999999998742 3444 566666677888
Q ss_pred EEEEEeeccCCCCCchHHHHHHHHhhhHhhhh-hccCcccCCeeEEEeecccccccccccc
Q 010318 223 LLLVVNKMDDHTVNWSKERYDEIESKMTPFLK-ASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 223 ~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~-~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+|+|+||+|+...+ .. ...+.. ...+. ..+ ..+++|+||++|.|+.+|.+
T Consensus 220 vIlVlNKiDlv~~~--~~-~~~il~--~~~~~l~lg-----~~~VV~iSA~~G~GvdeL~e 270 (772)
T 3zvr_A 220 TIGVITKLDLMDEG--TD-ARDVLE--NKLLPLRRG-----YIGVVNRSQKDIDGKKDITA 270 (772)
T ss_dssp EEEEEECTTSSCTT--CC-SHHHHT--TCSSCCSSC-----EEECCCCCCEESSSSEEHHH
T ss_pred EEEEEeCcccCCcc--hh-hHHHHH--HHhhhhhcc-----CCceEEecccccccchhHHH
Confidence 89999999994322 11 111111 00000 112 25899999999999998765
No 192
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.32 E-value=4.1e-12 Score=131.31 Aligned_cols=153 Identities=20% Similarity=0.248 Sum_probs=89.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC-
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 159 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~- 159 (513)
....|+++|++|||||||+++|......+.+ ....|.......+...+
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~-------------------------------~~ftTl~p~~G~V~~~~~ 204 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHPKIAP-------------------------------YPFTTLSPNLGVVEVSEE 204 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCCEECC-------------------------------CTTCSSCCEEEEEECSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCccccC-------------------------------cccceecceeeEEEecCc
Confidence 3456999999999999999998432111000 01112222223344444
Q ss_pred eEEEEEeCCCCcch-------HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH-cCCCeEEEEEeecc
Q 010318 160 TRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT-LGVTKLLLVVNKMD 231 (513)
Q Consensus 160 ~~i~liDtPGh~~f-------~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~-~~ip~~ivviNK~D 231 (513)
..++++|+||+... .....+.+..+|.+|+|+|+....++ .++ .-.++...++.. ...| .|+++||+|
T Consensus 205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls~~~~~-~ls--~g~~el~~la~aL~~~P-~ILVlNKlD 280 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLK-TLE--TLRKEVGAYDPALLRRP-SLVALNKVD 280 (416)
T ss_dssp CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHH-HHH--HHHHHHHHHCHHHHHSC-EEEEEECCT
T ss_pred ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCccCCHH-HHH--HHHHHHHHHhHHhhcCC-EEEEEECCC
Confidence 78999999997432 22334456679999999999721110 000 011122222222 3578 678889999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+ .. ...+ ..+...++..+ .+++++||+++.|+.++++
T Consensus 281 l--~~--~~~~----~~l~~~l~~~g------~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 281 L--LE--EEAV----KALADALAREG------LAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp T--SC--HHHH----HHHHHHHHTTT------SCEEECCTTTCTTHHHHHH
T ss_pred h--hh--HHHH----HHHHHHHHhcC------CeEEEEECCCccCHHHHHH
Confidence 8 32 1222 33333444333 4799999999999999755
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.31 E-value=1.4e-12 Score=123.12 Aligned_cols=165 Identities=14% Similarity=0.161 Sum_probs=89.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEE-eee---EEE
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVE-VGR---AHF 155 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~-~~~---~~~ 155 (513)
.+.++|+++|++|+|||||+++|+........-.. .. .+.+. + .|.. .-+..|.++. ... ..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~--i~---~d~~~-~------~d~~-~~~~~~~~~~~~~~~~~~~~ 94 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGA--ML---GDVVS-K------ADYE-RVRRFGIKAEAISTGKECHL 94 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEE--EE---CSCCC-H------HHHH-HHHTTTCEEEECCCTTCSSC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEE--Ee---cCCCC-c------hhHH-HHHhCCCcEEEecCCceeec
Confidence 45689999999999999999999866432100000 00 00000 0 0000 0011232211 100 011
Q ss_pred ----------EeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEE
Q 010318 156 ----------ETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLL 225 (513)
Q Consensus 156 ----------~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~iv 225 (513)
.+.+..+.|+||||....-. .....++.+++|+|+..+. . .........+.| +++
T Consensus 95 ~~~~~~~~~~~~~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~---------~--~~~~~~~~~~~~-~ii 159 (221)
T 2wsm_A 95 DAHMIYHRLKKFSDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGD---------D--VVEKHPEIFRVA-DLI 159 (221)
T ss_dssp CHHHHHTTGGGGTTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCT---------T--HHHHCHHHHHTC-SEE
T ss_pred ccHHHHHHHHhcCCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcc---------h--hhhhhhhhhhcC-CEE
Confidence 33567899999999511100 0012468899999998762 1 112223345678 789
Q ss_pred EEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 226 VVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 226 viNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
++||+|+. +.....++++.+.+ +.++ ..++++++||++|.|+.++++
T Consensus 160 v~NK~Dl~--~~~~~~~~~~~~~~----~~~~----~~~~i~~~Sa~~g~gi~~l~~ 206 (221)
T 2wsm_A 160 VINKVALA--EAVGADVEKMKADA----KLIN----PRAKIIEMDLKTGKGFEEWID 206 (221)
T ss_dssp EEECGGGH--HHHTCCHHHHHHHH----HHHC----TTSEEEECBTTTTBTHHHHHH
T ss_pred EEecccCC--cchhhHHHHHHHHH----HHhC----CCCeEEEeecCCCCCHHHHHH
Confidence 99999983 21101233333333 3322 135899999999999998644
No 194
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.22 E-value=3.4e-11 Score=116.72 Aligned_cols=110 Identities=15% Similarity=0.150 Sum_probs=64.1
Q ss_pred CeEEEEEeCCCCcchHHH------HHHhhhhcCEEEEEEECCCCcccccccCCcchHH-----HHHHHHHcCCCeEEEEE
Q 010318 159 TTRFTILDAPGHKSYVPN------MISGASQADIGVLVISARKGEFETGFEKGGQTRE-----HVMLAKTLGVTKLLLVV 227 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~------~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e-----~l~~~~~~~ip~~ivvi 227 (513)
.+.+.|+||||..++... +...+.. +++|+|+|+..... ..... ........++| +++++
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~-------~~~~~~~~~~~~~~~~~~~~p-~~iv~ 178 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKK-------PNDYCFVRFFALLIDLRLGAT-TIPAL 178 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCS-------HHHHHHHHHHHHHHHHHHTSC-EEEEE
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcC-------HHHHHHHHHHHHHHhcccCCC-eEEEE
Confidence 368999999998776422 2234556 89999999876521 11111 11223345788 88999
Q ss_pred eeccCCCCCchHHHHHHHHhhhHhh---------------------hhhccCcccCCeeEEEeecccccccccccc
Q 010318 228 NKMDDHTVNWSKERYDEIESKMTPF---------------------LKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 228 NK~D~~~~~~~~~~~~~i~~~l~~~---------------------l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
||+|+.... ......+..+++..+ +..++. ..+++++||++|.|+.++++
T Consensus 179 NK~D~~~~~-~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~SA~~~~gi~~l~~ 249 (262)
T 1yrb_A 179 NKVDLLSEE-EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP----PVRVLYLSAKTREGFEDLET 249 (262)
T ss_dssp CCGGGCCHH-HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC----CCCCEECCTTTCTTHHHHHH
T ss_pred ecccccccc-cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC----cccceEEEecCcccHHHHHH
Confidence 999983211 001111111111111 122221 24799999999999998644
No 195
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.21 E-value=2.3e-11 Score=123.80 Aligned_cols=113 Identities=14% Similarity=0.138 Sum_probs=81.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
....+|+++|.||+|||||+|+|......+ ....+.|++.....+.+.+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v-------------------------------~~~pftT~~~~~g~~~~~~ 118 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEA-------------------------------AEYEFTTLVTVPGVIRYKG 118 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCG-------------------------------GGTCSSCCCEEEEEEEETT
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcc-------------------------------cCCCCceeeeeeEEEEeCC
Confidence 345789999999999999999994322111 1226778887778888999
Q ss_pred eEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-----CCCeEEEEE
Q 010318 160 TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-----GVTKLLLVV 227 (513)
Q Consensus 160 ~~i~liDtPGh~~-------f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~-----~ip~~ivvi 227 (513)
.++.|+||||..+ ..+..+..++.||++++|||+.++.. +.......+... ..| .++++
T Consensus 119 ~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~--------~~~~i~~EL~~~~~~l~~k~-~~i~~ 189 (376)
T 4a9a_A 119 AKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLH--------HKQIIEKELEGVGIRLNKTP-PDILI 189 (376)
T ss_dssp EEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHH--------HHHHHHHHHHHTTEEETCCC-CCEEE
T ss_pred cEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHH--------HHHHHHHHHHHhhHhhccCC-hhhhh
Confidence 9999999999632 34566777899999999999987531 111122233333 345 67899
Q ss_pred eeccC
Q 010318 228 NKMDD 232 (513)
Q Consensus 228 NK~D~ 232 (513)
||+|.
T Consensus 190 nK~d~ 194 (376)
T 4a9a_A 190 KKKEK 194 (376)
T ss_dssp EECSS
T ss_pred hHhhh
Confidence 99997
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.13 E-value=1.4e-10 Score=117.27 Aligned_cols=82 Identities=15% Similarity=0.107 Sum_probs=55.0
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC---
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET--- 159 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--- 159 (513)
.+|+++|.+|+|||||+|+|....... ....+.|++.....+...+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v-------------------------------~~~p~tTi~p~~g~v~~~~~r~ 51 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEA-------------------------------ANYPFCTIEPNTGVVPMPDPRL 51 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------------------------------------CCCCCCCCSSEEECCCHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcc-------------------------------cCCCCceECceEEEEecCCccc
Confidence 689999999999999999995422100 0012333333222333333
Q ss_pred --------------eEEEEEeCCCCcchHH-------HHHHhhhhcCEEEEEEECCC
Q 010318 160 --------------TRFTILDAPGHKSYVP-------NMISGASQADIGVLVISARK 195 (513)
Q Consensus 160 --------------~~i~liDtPGh~~f~~-------~~~~~~~~~D~~ilVVda~~ 195 (513)
..+.|+||||+.++.. ..+..++.+|++++|+|+.+
T Consensus 52 ~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 52 DALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 5799999999987642 23455789999999999986
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.11 E-value=1.8e-10 Score=117.21 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=30.3
Q ss_pred CeEEEEEeCCCCcch-------HHHHHHhhhhcCEEEEEEECCC
Q 010318 159 TTRFTILDAPGHKSY-------VPNMISGASQADIGVLVISARK 195 (513)
Q Consensus 159 ~~~i~liDtPGh~~f-------~~~~~~~~~~~D~~ilVVda~~ 195 (513)
...+.|+||||..++ .+..+..++.+|++++|+|+..
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 457999999998765 2455667899999999999986
No 198
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.11 E-value=1.2e-10 Score=117.55 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=59.9
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCC
Q 010318 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVN 236 (513)
Q Consensus 157 ~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~ 236 (513)
..+..+.|+||||...--. .....+|++++|+|+..+.. .+ ..++. ...++ .++++||+|+...
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~---~~---~i~~~-----i~~~~-~ivvlNK~Dl~~~- 208 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDE---LQ---GIKKG-----IFELA-DMIAVNKADDGDG- 208 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------------CCTT-----HHHHC-SEEEEECCSTTCC-
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCccc---HH---HHHHH-----Hhccc-cEEEEEchhccCc-
Confidence 4678999999999754321 22468999999999875421 00 00000 01235 4677899997321
Q ss_pred chHHHHHHHHhhhHhhhhhccCc-ccCCeeEEEeecccccccccccc
Q 010318 237 WSKERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 237 ~~~~~~~~i~~~l~~~l~~~g~~-~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
........+.+...+..+.-. .....+++++||++|.|+.++.+
T Consensus 209 --~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~ 253 (337)
T 2qm8_A 209 --ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWS 253 (337)
T ss_dssp --HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHH
T ss_pred --hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHH
Confidence 111222233333333222100 00024789999999999998754
No 199
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=99.07 E-value=3.7e-10 Score=93.29 Aligned_cols=81 Identities=20% Similarity=0.241 Sum_probs=70.2
Q ss_pred CCCCceEEEEEEEc-cCCeEEEEEEEeeeecCCCEEEEecCC-cEEEEEEEEECCeeecccCCCCeEEEEeccCCcccce
Q 010318 308 PNGPFRMPIIDKFK-DMGTVVMGKVESGSVREGDSLLVMPNK-AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDIL 385 (513)
Q Consensus 308 ~~~~~~~~i~~~~~-~~G~vv~g~v~sG~l~~gd~v~~~p~~-~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~ 385 (513)
...|.++.|..++. --|+++.|+|++|+|++|+.| |++ ...+|+||+++++++++|.|||.|+++|+|... +++
T Consensus 31 ~~~P~k~~ilp~~~~vFgpvivGrVe~G~LK~G~~V---Pg~~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~-~I~ 106 (116)
T 1xe1_A 31 KKPAGKVVVEEVVNIMGKDVIIGTVESGMIGVGFKV---KGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKIG-KVK 106 (116)
T ss_dssp SSCSEEEEEEEEEEETTEEEEEEEEEEEEEETTCEE---ECSSCEEEEEEEEETTEEESEEETTCEEEEEEESCCC-CCC
T ss_pred ecCcEEEEEEecCCeEECCeeEEEEeEEEEcCCCCc---CCCceEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc-ccC
Confidence 35677787777332 118899999999999999999 888 799999999999999999999999999999877 899
Q ss_pred eeeEEcc
Q 010318 386 SGFVLSS 392 (513)
Q Consensus 386 ~G~vl~~ 392 (513)
+|++|..
T Consensus 107 ~GdVLyv 113 (116)
T 1xe1_A 107 KGDVLEI 113 (116)
T ss_dssp TTCEEEE
T ss_pred CCcEEEE
Confidence 9999853
No 200
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.04 E-value=7.3e-10 Score=110.01 Aligned_cols=161 Identities=12% Similarity=0.183 Sum_probs=72.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe--C
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET--E 158 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~--~ 158 (513)
-.++|+++|+.|+|||||+++|....-..... +. -.|. ....++........+.. .
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~-------~~g~--------------~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERV-IS-------GAAE--------------KIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC----------------------------------------------CEEEEC---C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCC-cc-------cCCc--------------ccCCcceEeeEEEEecCCCc
Confidence 45788999999999999999985321100000 00 0000 00000111111111221 2
Q ss_pred CeEEEEEeCCCC-------cchHH----------HHHHhhh----------hcCEEEEEEECCCCcccccccCCcchHHH
Q 010318 159 TTRFTILDAPGH-------KSYVP----------NMISGAS----------QADIGVLVISARKGEFETGFEKGGQTREH 211 (513)
Q Consensus 159 ~~~i~liDtPGh-------~~f~~----------~~~~~~~----------~~D~~ilVVda~~g~~e~~~~~~~qt~e~ 211 (513)
...++++||||. +.|.. ...+.++ .+++++++++.+.+- +.+...+.
T Consensus 75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~------Ld~~~~~~ 148 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHG------LKPLDVAF 148 (301)
T ss_dssp CEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSS------CCHHHHHH
T ss_pred ccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccC------CCHHHHHH
Confidence 357899999998 33321 1222221 234466666654321 12333333
Q ss_pred HHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 212 VMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 212 l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+..+. .+++ +++++||.|+. . ........+++..+++..+ ++++++||++| |+++++.
T Consensus 149 l~~l~-~~~~-iilV~~K~Dl~--~--~~e~~~~~~~~~~~~~~~~------~~~~e~Sa~~~-~v~e~f~ 206 (301)
T 2qnr_A 149 MKAIH-NKVN-IVPVIAKADTL--T--LKERERLKKRILDEIEEHN------IKIYHLPDAES-DEDEDFK 206 (301)
T ss_dssp HHHHT-TTSC-EEEEECCGGGS--C--HHHHHHHHHHHHHHHHHTT------CCCCCCC----------CH
T ss_pred HHHHH-hcCC-EEEEEEeCCCC--C--HHHHHHHHHHHHHHHHHcC------CeEEecCCccc-cccHHHH
Confidence 33332 2466 89999999983 2 2233344556666666654 47899999999 9998654
No 201
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.02 E-value=1.8e-09 Score=109.71 Aligned_cols=138 Identities=11% Similarity=0.148 Sum_probs=74.9
Q ss_pred cCcEEEeeeEEEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCc---cccc-ccCCcchHHHHHHHHH--
Q 010318 144 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGE---FETG-FEKGGQTREHVMLAKT-- 217 (513)
Q Consensus 144 ~giTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~---~e~~-~~~~~qt~e~l~~~~~-- 217 (513)
+..|+.+....+..++..+.++||||++.|.+.+......++++|+|+|.++-. .|.. .+.-......+..+..
T Consensus 185 r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~ 264 (362)
T 1zcb_A 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 264 (362)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch
Confidence 334444455667778899999999999999999999999999999999998620 0000 0000012222222221
Q ss_pred --cCCCeEEEEEeeccCCCCC------------c--hHHHHHHHHhhhHhhhhhccCcc-cCCeeEEEeecccccccccc
Q 010318 218 --LGVTKLLLVVNKMDDHTVN------------W--SKERYDEIESKMTPFLKASGYNV-KKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 218 --~~ip~~ivviNK~D~~~~~------------~--~~~~~~~i~~~l~~~l~~~g~~~-~~~~~iipiSa~~g~gi~~l 280 (513)
.++| +|+++||+|+.... | ....+++..+-+...+..+.-.. ...+.++.+||++|.|+.++
T Consensus 265 ~~~~~p-iILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~v 343 (362)
T 1zcb_A 265 VFSNVS-IILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLV 343 (362)
T ss_dssp GGTTSE-EEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHH
T ss_pred hhCCCC-EEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHH
Confidence 2577 99999999983100 0 00112233322222222211100 12468899999999999986
Q ss_pred cc
Q 010318 281 VD 282 (513)
Q Consensus 281 ~~ 282 (513)
+.
T Consensus 344 F~ 345 (362)
T 1zcb_A 344 FR 345 (362)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 202
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.02 E-value=3.2e-10 Score=119.66 Aligned_cols=65 Identities=28% Similarity=0.369 Sum_probs=42.7
Q ss_pred CCeEEEEEeCCCCcc----hHHHHHHh--hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeE-EEEEeec
Q 010318 158 ETTRFTILDAPGHKS----YVPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKL-LLVVNKM 230 (513)
Q Consensus 158 ~~~~i~liDtPGh~~----f~~~~~~~--~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~-ivviNK~ 230 (513)
.++.+.||||||... +...+... +..+|.+++||||..|. .....+..+... +| + +|++||+
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~---------~~~~~a~~~~~~-~~-i~gvVlNK~ 250 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ---------ACEAQAKAFKDK-VD-VASVIVTKL 250 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT---------THHHHHHHHHHH-HC-CCCEEEECT
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc---------cHHHHHHHHHhh-cC-ceEEEEeCC
Confidence 678999999999763 33333222 23799999999999872 233333333321 45 3 6899999
Q ss_pred cCC
Q 010318 231 DDH 233 (513)
Q Consensus 231 D~~ 233 (513)
|..
T Consensus 251 D~~ 253 (504)
T 2j37_W 251 DGH 253 (504)
T ss_dssp TSC
T ss_pred ccc
Confidence 984
No 203
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.99 E-value=4.2e-10 Score=116.31 Aligned_cols=158 Identities=15% Similarity=0.168 Sum_probs=76.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC-
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET- 159 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~- 159 (513)
-.++|+++|+.|+|||||+++|.+....... .+... .+ ....+........+...+
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~------------~~~~~------~~-----~~~t~~~~~i~~v~q~~~~ 86 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPE------------YPGPS------HR-----IKKTVQVEQSKVLIKEGGV 86 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCC------------CCSCC----------------CCEEEEEECC------
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCC------------CCCcc------cC-----CccceeeeeEEEEEecCCc
Confidence 3467899999999999999999533211000 00000 00 001111111111112122
Q ss_pred -eEEEEEeCCCCcchHH------HHH------------------H-hhhh--cCEEEEEEECC-CCcccccccCCcchHH
Q 010318 160 -TRFTILDAPGHKSYVP------NMI------------------S-GASQ--ADIGVLVISAR-KGEFETGFEKGGQTRE 210 (513)
Q Consensus 160 -~~i~liDtPGh~~f~~------~~~------------------~-~~~~--~D~~ilVVda~-~g~~e~~~~~~~qt~e 210 (513)
..++++||||...+.. .+. + .+.. ++++|++++++ ++. .+...+
T Consensus 87 ~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L-------~~~d~~ 159 (418)
T 2qag_C 87 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL-------KPLDIE 159 (418)
T ss_dssp CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSC-------CHHHHH
T ss_pred ccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCC-------CHHHHH
Confidence 3689999999876532 110 0 0122 34566666655 452 244445
Q ss_pred HHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 211 HVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 211 ~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
.+..+.. +++ +|+|+||+|+. ........++.+...+...+ ++++.+|+.++.|+.++
T Consensus 160 ~lk~L~~-~v~-iIlVinK~Dll----~~~ev~~~k~~i~~~~~~~~------i~~~~~sa~~~~~v~~~ 217 (418)
T 2qag_C 160 FMKRLHE-KVN-IIPLIAKADTL----TPEECQQFKKQIMKEIQEHK------IKIYEFPETDDEEENKL 217 (418)
T ss_dssp HHHHHTT-TSE-EEEEEESTTSS----CHHHHHHHHHHHHHHHHHHT------CCCCCCC----------
T ss_pred HHHHHhc-cCc-EEEEEEcccCc----cHHHHHHHHHHHHHHHHHcC------CeEEeCCCCCCcCHHHH
Confidence 5555543 777 99999999983 23456666677777777665 46889999999888763
No 204
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.92 E-value=1.6e-09 Score=102.27 Aligned_cols=99 Identities=13% Similarity=0.092 Sum_probs=57.0
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCch
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWS 238 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~ 238 (513)
+..+.++|++|.-... ...-...+..+.|+|+..+.. ... . .....+.| .++++||+|+... .
T Consensus 118 ~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~-------~~~-~---~~~~~~~~-~iiv~NK~Dl~~~--~ 180 (226)
T 2hf9_A 118 EIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDD-------TIE-K---HPGIMKTA-DLIVINKIDLADA--V 180 (226)
T ss_dssp GCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTT-------TTT-T---CHHHHTTC-SEEEEECGGGHHH--H
T ss_pred CCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchh-------hHh-h---hhhHhhcC-CEEEEeccccCch--h
Confidence 3478999999942110 011134677889999765421 111 0 11224678 7899999998311 0
Q ss_pred HHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 239 KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 239 ~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
...++++ ...++.++. ..+++++||++|.|+.++++
T Consensus 181 ~~~~~~~----~~~~~~~~~----~~~~~~~Sa~~g~gv~~l~~ 216 (226)
T 2hf9_A 181 GADIKKM----ENDAKRINP----DAEVVLLSLKTMEGFDKVLE 216 (226)
T ss_dssp TCCHHHH----HHHHHHHCT----TSEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHH----HHHHHHhCC----CCeEEEEEecCCCCHHHHHH
Confidence 0112222 233333321 35899999999999998644
No 205
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.88 E-value=4.6e-09 Score=104.88 Aligned_cols=132 Identities=12% Similarity=0.106 Sum_probs=84.1
Q ss_pred cCcEEEeeeEEEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECC-------CCcccccccCCcchHHHHHHHH
Q 010318 144 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISAR-------KGEFETGFEKGGQTREHVMLAK 216 (513)
Q Consensus 144 ~giTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~-------~g~~e~~~~~~~qt~e~l~~~~ 216 (513)
+..|+.+....+..++..+.++||+|+++|.+.+....+.++++|+|+|.+ +... .....+.+.+..
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~------~nr~~es~~~~~ 224 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDN------ENRMEESKALFR 224 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTT------SBHHHHHHHHHH
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECcccccccccccc------HhHHHHHHHHHH
Confidence 445555566778888999999999999999999999999999999999865 2110 012222222222
Q ss_pred H-------cCCCeEEEEEeeccCCCCC------------ch--HHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccc
Q 010318 217 T-------LGVTKLLLVVNKMDDHTVN------------WS--KERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGL 275 (513)
Q Consensus 217 ~-------~~ip~~ivviNK~D~~~~~------------~~--~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~ 275 (513)
. .++| +|++.||+|+.... |. ...+++..+-+...+....-.....+.+..+||+++.
T Consensus 225 ~i~~~~~~~~~~-iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~ 303 (327)
T 3ohm_A 225 TIITYPWFQNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTE 303 (327)
T ss_dssp HHHTSGGGTTCE-EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHH
T ss_pred HHhhhhccCCce-EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCH
Confidence 1 2577 99999999983210 00 0122333333333333322222235778899999999
Q ss_pred ccccccc
Q 010318 276 NMKTRVD 282 (513)
Q Consensus 276 gi~~l~~ 282 (513)
|+...+.
T Consensus 304 nV~~vF~ 310 (327)
T 3ohm_A 304 NIRFVFA 310 (327)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998644
No 206
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.84 E-value=2.1e-08 Score=100.52 Aligned_cols=136 Identities=20% Similarity=0.210 Sum_probs=82.7
Q ss_pred cCcEEEeeeEEEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCC---cccccccCCcchHHH---HHHHHH
Q 010318 144 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG---EFETGFEKGGQTREH---VMLAKT 217 (513)
Q Consensus 144 ~giTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g---~~e~~~~~~~qt~e~---l~~~~~ 217 (513)
+..|+.+....+...+..+.++||+|+++|.+.+....+.++++|+|+|.++- ..|.. ......+. +..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~--~~nr~~es~~~~~~i~~ 222 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDG--NTSRLTESIAVFKDIMT 222 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--C--CSBHHHHHHHHHHHHHH
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCcccccccccc--ccchHHHHHHHHHHHhh
Confidence 44566566677888899999999999999999999999999999999998720 00000 00122222 222222
Q ss_pred ----cCCCeEEEEEeeccCCCCC------------ch-HHHHHHHHhhhHhhh------hhccCccc-----------CC
Q 010318 218 ----LGVTKLLLVVNKMDDHTVN------------WS-KERYDEIESKMTPFL------KASGYNVK-----------KD 263 (513)
Q Consensus 218 ----~~ip~~ivviNK~D~~~~~------------~~-~~~~~~i~~~l~~~l------~~~g~~~~-----------~~ 263 (513)
.++| +|++.||+|+.... |. ...+++..+-+...+ ..+..... ..
T Consensus 223 ~~~~~~~p-iiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (340)
T 4fid_A 223 NEFLKGAV-KLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEK 301 (340)
T ss_dssp CGGGTTSE-EEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CE
T ss_pred hhccCCCe-EEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcc
Confidence 2577 99999999983100 00 001222222222222 11111111 24
Q ss_pred eeEEEeecccccccccccc
Q 010318 264 VQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 264 ~~iipiSa~~g~gi~~l~~ 282 (513)
+.+..+||+.+.|+...+.
T Consensus 302 iy~h~TsA~dt~nv~~vF~ 320 (340)
T 4fid_A 302 VYTNPTNATDGSNIKRVFM 320 (340)
T ss_dssp EEEEEECTTCHHHHHHHHH
T ss_pred eEEEEEEeeCcHHHHHHHH
Confidence 7889999999999988654
No 207
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.79 E-value=6e-10 Score=113.77 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=86.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeE
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 161 (513)
..+|+++|.+|+|||||+|+|+..... .. ........+|.|.+.....+. ..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~--------------~~-----------~~~~~~~~~gtT~~~~~~~~~---~~ 213 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATG--------------KG-----------NVITTSYFPGTTLDMIEIPLE---SG 213 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHH--------------TT-----------CCCEEEECTTSSCEEEEEECS---TT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccC--------------Cc-----------cceeecCCCCeEEeeEEEEeC---CC
Confidence 468999999999999999999654210 00 000011225666665443332 24
Q ss_pred EEEEeCCCCcch-------HHHHHHhh---hhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 162 FTILDAPGHKSY-------VPNMISGA---SQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 162 i~liDtPGh~~f-------~~~~~~~~---~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
+.++||||..+. ....+..+ ...|.+++++++....+..++. .+.++...+.| +++++||+|
T Consensus 214 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~-------~l~~l~~~~~~-~~~v~~k~d 285 (369)
T 3ec1_A 214 ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLA-------RLDYIKGGRRS-FVCYMANEL 285 (369)
T ss_dssp CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTE-------EEEEEESSSEE-EEEEECTTS
T ss_pred eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEE-------EEEEccCCCce-EEEEecCCc
Confidence 899999995322 11112222 5789999999996554432222 13333445677 999999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
.....- .+...+.++ +.+| ..+.|.++....++.++
T Consensus 286 ~~~~~~----~~~~~~~~~---~~~g------~~l~p~~~~~~~~~~~l 321 (369)
T 3ec1_A 286 TVHRTK----LEKADSLYA---NQLG------ELLSPPSKRYAAEFPPL 321 (369)
T ss_dssp CEEEEE----GGGHHHHHH---HHBT------TTBCSSCGGGTTTCCCE
T ss_pred cccccc----HHHHHHHHH---HhcC------CccCCCCchhhhhccCc
Confidence 843321 112222222 2222 25677777766666554
No 208
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.74 E-value=3.1e-08 Score=102.10 Aligned_cols=140 Identities=14% Similarity=0.181 Sum_probs=75.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE 158 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~ 158 (513)
....++++|+|+.|+|||||++.|.+.. +.... . .....+.+.....+.+...
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~--l~g~~--------------------~-----~~~~~~~~~~~i~~v~Q~~ 91 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNTK--FEGEP--------------------A-----THTQPGVQLQSNTYDLQES 91 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTSC--C--------------------------------CCSSCEEEEEEEEEEC-
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCcc--ccCCc--------------------C-----CCCCccceEeeEEEEeecC
Confidence 3445679999999999999999995431 11000 0 0001233333222223322
Q ss_pred C--eEEEEEeCCCCcch-------------HHHH----HH---hhh-------hc--C-EEEEEEECCCCcccccccCCc
Q 010318 159 T--TRFTILDAPGHKSY-------------VPNM----IS---GAS-------QA--D-IGVLVISARKGEFETGFEKGG 206 (513)
Q Consensus 159 ~--~~i~liDtPGh~~f-------------~~~~----~~---~~~-------~~--D-~~ilVVda~~g~~e~~~~~~~ 206 (513)
+ ..++++|+||.... +... +. ++. .+ | +++||+|+.++.. .
T Consensus 92 ~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~-------~ 164 (427)
T 2qag_B 92 NVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK-------S 164 (427)
T ss_dssp -CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C-------H
T ss_pred ccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC-------H
Confidence 2 36899999996542 1111 11 111 12 2 4667788887742 3
Q ss_pred chHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccC
Q 010318 207 QTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGY 258 (513)
Q Consensus 207 qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~ 258 (513)
...+.+..+. .++| +|+++||+|.. +......+...+...|+..|.
T Consensus 165 ~Dieilk~L~-~~~~-vI~Vi~KtD~L----t~~E~~~l~~~I~~~L~~~gi 210 (427)
T 2qag_B 165 LDLVTMKKLD-SKVN-IIPIIAKADAI----SKSELTKFKIKITSELVSNGV 210 (427)
T ss_dssp HHHHHHHHTC-SCSE-EEEEESCGGGS----CHHHHHHHHHHHHHHHBTTBC
T ss_pred HHHHHHHHHh-hCCC-EEEEEcchhcc----chHHHHHHHHHHHHHHHHcCC
Confidence 4555555554 4676 99999999984 234556666666665655543
No 209
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.73 E-value=1.2e-09 Score=111.58 Aligned_cols=152 Identities=13% Similarity=0.104 Sum_probs=85.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCCeE
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETETTR 161 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 161 (513)
..+|+++|.+|+|||||+|+|+...... .+ +........|.|.+.....+. ..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~-----------------~~-------~~~~~~~~~gtT~~~~~~~~~---~~ 212 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDE-----------------TE-------NVITTSHFPGTTLDLIDIPLD---EE 212 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTS-----------------CS-------SCCEEECCC----CEEEEESS---SS
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccc-----------------cc-------cceecCCCCCeecceEEEEec---CC
Confidence 3689999999999999999997653110 00 000011225666655443332 23
Q ss_pred EEEEeCCCCcch-------HHHHHHh---hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 162 FTILDAPGHKSY-------VPNMISG---ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 162 i~liDtPGh~~f-------~~~~~~~---~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
+.++||||..+. ....+.. ....+..++++++....+..++.. +..+...+.| +++++||+|
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-------~d~l~~~~~~-~~~v~nk~d 284 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLAR-------FDYVSGGRRA-FTCHFSNRL 284 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEE-------EEEEESSSEE-EEEEECTTS
T ss_pred eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEE-------EEEecCCCce-EEEEecCcc
Confidence 899999996332 1122222 357899999999876544323221 2233345677 999999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
..... ..+...+.+.+ .+| ..+.|.++..+.++.++.
T Consensus 285 ~~~~~----~~~~~~~~~~~---~~g------~~l~p~~~~~~~~~~~l~ 321 (368)
T 3h2y_A 285 TIHRT----KLEKADELYKN---HAG------DLLSPPTPEELENMPELV 321 (368)
T ss_dssp CEEEE----EHHHHHHHHHH---HBT------TTBCSSCHHHHHTSCCEE
T ss_pred ccccc----cHHHHHHHHHH---HhC------CccCCCchhhHhhccCcE
Confidence 84332 22223332222 233 246777777666666543
No 210
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.66 E-value=2.2e-07 Score=95.61 Aligned_cols=157 Identities=15% Similarity=0.163 Sum_probs=87.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHH----hCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEE
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFL----SGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFE 156 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~----~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~ 156 (513)
....++++|++|+|||||++.|.+. .|.+.- +..+..+ .++ .+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~------------------------~g~~~t~-~~~-------v~q 115 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKT------------------------GVVEVTM-ERH-------PYK 115 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCC------------------------CC----C-CCE-------EEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEE------------------------CCeecce-eEE-------ecc
Confidence 4568999999999999999999652 222111 0000000 111 122
Q ss_pred eCC-eEEEEEeCCCCcc---hHHHHHH--hhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeec
Q 010318 157 TET-TRFTILDAPGHKS---YVPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKM 230 (513)
Q Consensus 157 ~~~-~~i~liDtPGh~~---f~~~~~~--~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~ 230 (513)
... ..++++|+||... .....+. ++...|..++ ++...+ +.|....+..+...+.| +++|+||.
T Consensus 116 ~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~--------~kqrv~la~aL~~~~~p-~~lV~tkp 185 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRF--------KKNDIDIAKAISMMKKE-FYFVRTKV 185 (413)
T ss_dssp CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCC--------CHHHHHHHHHHHHTTCE-EEEEECCH
T ss_pred ccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCc--------cHHHHHHHHHHHhcCCC-eEEEEecC
Confidence 222 3689999999531 2333333 3344566555 776543 14666666677777888 89999999
Q ss_pred cCCCC-----CchHHHHHHHHhhhHhhh----hhccCcccCCeeEEEeec--ccccccccccc
Q 010318 231 DDHTV-----NWSKERYDEIESKMTPFL----KASGYNVKKDVQFLPISG--LMGLNMKTRVD 282 (513)
Q Consensus 231 D~~~~-----~~~~~~~~~i~~~l~~~l----~~~g~~~~~~~~iipiSa--~~g~gi~~l~~ 282 (513)
|+.-. ..+....+++.+.+..+. .+.|.. ...+|++|+ +.+.|++++.+
T Consensus 186 dlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~---~~~iiliSsh~l~~~~~e~L~d 245 (413)
T 1tq4_A 186 DSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA---EPPIFLLSNKNVCHYDFPVLMD 245 (413)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS---SCCEEECCTTCTTSTTHHHHHH
T ss_pred cccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC---CCcEEEEecCcCCccCHHHHHH
Confidence 97311 111111223333333332 233321 237899999 66667887644
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.66 E-value=2.1e-08 Score=102.47 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=49.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeC-
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETE- 158 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~- 158 (513)
....+|+++|.+|+|||||+++|...... .....+.|++.....+...
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~-------------------------------~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQAS-------------------------------AENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------------------------------------CCSEEEEECCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcc-------------------------------ccCCCccccCceeEEEEECC
Confidence 34578999999999999999999532110 0011333433333333222
Q ss_pred ----------------CeEEEEEeCCCCcchHH-------HHHHhhhhcCEEEEEEECCC
Q 010318 159 ----------------TTRFTILDAPGHKSYVP-------NMISGASQADIGVLVISARK 195 (513)
Q Consensus 159 ----------------~~~i~liDtPGh~~f~~-------~~~~~~~~~D~~ilVVda~~ 195 (513)
...+.|+||||+..+.. ..+..++.+|++++|||+.+
T Consensus 69 ~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 69 ERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp HHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 23599999999887643 45667889999999999975
No 212
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.65 E-value=4.3e-08 Score=99.19 Aligned_cols=138 Identities=14% Similarity=0.158 Sum_probs=83.9
Q ss_pred cCcEEEeeeEEEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcc---ccc-ccCCcchHHHHHHHHH--
Q 010318 144 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEF---ETG-FEKGGQTREHVMLAKT-- 217 (513)
Q Consensus 144 ~giTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~---e~~-~~~~~qt~e~l~~~~~-- 217 (513)
+..|+.+....+..++..+.|+||+|+++|.+.+......++++|+|+|.++-.. |.. ...-......+..+..
T Consensus 177 ~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~ 256 (353)
T 1cip_A 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256 (353)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc
Confidence 3445555556677889999999999999999999999999999999999886210 000 0000122222222222
Q ss_pred --cCCCeEEEEEeeccCCCCC------------ch-HHHHHHHHhhhHhhhhhccCc-ccCCeeEEEeeccccccccccc
Q 010318 218 --LGVTKLLLVVNKMDDHTVN------------WS-KERYDEIESKMTPFLKASGYN-VKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 218 --~~ip~~ivviNK~D~~~~~------------~~-~~~~~~i~~~l~~~l~~~g~~-~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.++| +|++.||+|+.... +. ...+++..+-+...+..+... ....+.++.+||++|.|+.+++
T Consensus 257 ~~~~~p-iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF 335 (353)
T 1cip_A 257 WFTDTS-IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVF 335 (353)
T ss_dssp GGTTSE-EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHH
T ss_pred cccCCc-EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHH
Confidence 2577 99999999983100 00 011223333232222222110 0235789999999999999865
Q ss_pred c
Q 010318 282 D 282 (513)
Q Consensus 282 ~ 282 (513)
.
T Consensus 336 ~ 336 (353)
T 1cip_A 336 D 336 (353)
T ss_dssp H
T ss_pred H
Confidence 4
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.62 E-value=9.4e-08 Score=99.26 Aligned_cols=66 Identities=23% Similarity=0.277 Sum_probs=41.6
Q ss_pred CCeEEEEEeCCCCcch----HHHHHH--hhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCC-CeEEEEEeec
Q 010318 158 ETTRFTILDAPGHKSY----VPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV-TKLLLVVNKM 230 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f----~~~~~~--~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~i-p~~ivviNK~ 230 (513)
.++.+.||||||.... ...+.. .+..+|.+++|+||..|. .....+.... .++ +-..+++||+
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---------~~~~~~~~~~-~~~~~i~gvVlnK~ 248 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---------QAGIQAKAFK-EAVGEIGSIIVTKL 248 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---------GHHHHHHHHH-TTSCSCEEEEEECS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---------HHHHHHHHHh-hcccCCeEEEEeCC
Confidence 5678999999997653 222211 123699999999998761 2222222222 234 5367899999
Q ss_pred cCC
Q 010318 231 DDH 233 (513)
Q Consensus 231 D~~ 233 (513)
|..
T Consensus 249 D~~ 251 (432)
T 2v3c_C 249 DGS 251 (432)
T ss_dssp SSC
T ss_pred CCc
Confidence 983
No 214
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.59 E-value=1.7e-07 Score=91.37 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=46.1
Q ss_pred hcCEEEEEEECC-CCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCc
Q 010318 183 QADIGVLVISAR-KGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 259 (513)
Q Consensus 183 ~~D~~ilVVda~-~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~ 259 (513)
.++++++++|.. +| +.+...+.+..+... ++ +|+++||+|.. +.......+..+...+...+..
T Consensus 111 Ral~~lllldep~~g-------L~~lD~~~l~~L~~~-~~-vI~Vi~K~D~l----t~~e~~~~k~~i~~~l~~~~i~ 175 (270)
T 3sop_A 111 RVHCCLYFISPTGHS-------LRPLDLEFMKHLSKV-VN-IIPVIAKADTM----TLEEKSEFKQRVRKELEVNGIE 175 (270)
T ss_dssp SCCEEEEEECCCSSS-------CCHHHHHHHHHHHTT-SE-EEEEETTGGGS----CHHHHHHHHHHHHHHHHHTTCC
T ss_pred eeeeeeEEEecCCCc-------CCHHHHHHHHHHHhc-Cc-EEEEEeccccC----CHHHHHHHHHHHHHHHHHcCcc
Confidence 368899999954 66 336777777777666 66 99999999984 3445666777777777766543
No 215
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.56 E-value=5.1e-07 Score=93.42 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=55.3
Q ss_pred CCeEEEEEeCCCCcch----HHHH--HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeecc
Q 010318 158 ETTRFTILDAPGHKSY----VPNM--ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMD 231 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f----~~~~--~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D 231 (513)
.++.+.||||||.... ...+ +..+..+|.++||+||..| ......+..... .++-..|++||+|
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g---------q~a~~~a~~f~~-~~~i~gVIlTKlD 250 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG---------QQAYNQALAFKE-ATPIGSIIVTKLD 250 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG---------GGHHHHHHHHHH-SCTTEEEEEECCS
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc---------hhHHHHHHHHHh-hCCCeEEEEECCC
Confidence 4588999999995332 2211 1223468999999999976 133333333332 2232457999999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.... ...+. .+.... ..|+..++. |+++++|.
T Consensus 251 ~~~~------gG~~l----s~~~~~------g~PI~fig~--Ge~vddL~ 282 (443)
T 3dm5_A 251 GSAK------GGGAL----SAVAAT------GAPIKFIGT--GEKIDDIE 282 (443)
T ss_dssp SCSS------HHHHH----HHHHTT------CCCEEEEEC--SSSTTCEE
T ss_pred Cccc------ccHHH----HHHHHH------CCCEEEEEc--CCChHHhh
Confidence 8321 11111 122222 346777764 99998763
No 216
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.42 E-value=1.9e-06 Score=89.08 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=56.2
Q ss_pred CCeEEEEEeCCCCcc------hHHHHHH--hhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEe
Q 010318 158 ETTRFTILDAPGHKS------YVPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVN 228 (513)
Q Consensus 158 ~~~~i~liDtPGh~~------f~~~~~~--~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviN 228 (513)
.++.+.||||||... +...+.. .+..+|.++||+||..| ......+.... ..++ -.|++|
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g---------q~a~~~a~~f~~~~~~--~gVIlT 246 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG---------QKAYDLASRFHQASPI--GSVIIT 246 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG---------GGGHHHHHHHHHHCSS--EEEEEE
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc---------hHHHHHHHHHhcccCC--cEEEEe
Confidence 467899999999644 2333322 22357999999999976 23334444343 3343 457999
Q ss_pred eccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 229 KMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 229 K~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
|+|.. .. .....+. .... ..|+..++. |++++++
T Consensus 247 KlD~~-a~-----~G~als~----~~~~------g~Pi~fig~--Ge~v~dL 280 (433)
T 3kl4_A 247 KMDGT-AK-----GGGALSA----VVAT------GATIKFIGT--GEKIDEL 280 (433)
T ss_dssp CGGGC-SC-----HHHHHHH----HHHH------TCEEEEEEC--CSSSSCE
T ss_pred ccccc-cc-----chHHHHH----HHHH------CCCEEEEEC--CCChHhC
Confidence 99973 21 1112211 1222 247777775 9998765
No 217
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.41 E-value=4.2e-07 Score=92.96 Aligned_cols=86 Identities=19% Similarity=0.112 Sum_probs=57.7
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+..+|+++|++|+|||||+++|........ ....+.|++.....+...+
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~------------------------------~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNP------------------------------ANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTST------------------------------TCCSSCCCCTTEEEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccc------------------------------cCCCceeecceeeeeeeCC
Confidence 3457899999999999999999954321000 0113344443333333333
Q ss_pred -----------------eEEEEEeCCCCcc-------hHHHHHHhhhhcCEEEEEEECCC
Q 010318 160 -----------------TRFTILDAPGHKS-------YVPNMISGASQADIGVLVISARK 195 (513)
Q Consensus 160 -----------------~~i~liDtPGh~~-------f~~~~~~~~~~~D~~ilVVda~~ 195 (513)
..+.++|+||... +.+.....++.+|.+++|+|+..
T Consensus 68 ~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 68 ERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4689999999533 34456677789999999999875
No 218
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.40 E-value=2e-06 Score=84.81 Aligned_cols=96 Identities=19% Similarity=0.193 Sum_probs=57.7
Q ss_pred CCeEEEEEeCCCCcc--hHHHHH------HhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEee
Q 010318 158 ETTRFTILDAPGHKS--YVPNMI------SGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNK 229 (513)
Q Consensus 158 ~~~~i~liDtPGh~~--f~~~~~------~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK 229 (513)
.++.+.||||||... ....+. ..+..+|.+++|+|+..| .+..+.+..... .++-..+++||
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---------~~~~~~~~~~~~-~~~i~gvVlnk 248 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---------QKAYDLASKFNQ-ASKIGTIIITK 248 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---------GGHHHHHHHHHH-TCTTEEEEEEC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---------HHHHHHHHHHHh-hCCCCEEEEeC
Confidence 577899999999776 322222 235579999999999765 234444443333 34534578999
Q ss_pred ccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 230 MDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 230 ~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+|.. .. ...+. .+....+ .|+..++ +|++++++.
T Consensus 249 ~D~~-~~-----~g~~~----~~~~~~~------~pi~~i~--~Ge~v~dl~ 282 (297)
T 1j8m_F 249 MDGT-AK-----GGGAL----SAVAATG------ATIKFIG--TGEKIDELE 282 (297)
T ss_dssp GGGC-TT-----HHHHH----HHHHTTT------CCEEEEE--CSSSTTCEE
T ss_pred CCCC-cc-----hHHHH----HHHHHHC------cCEEEEe--CCCChhhcc
Confidence 9972 11 11111 2233333 4666665 688887653
No 219
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.31 E-value=3.1e-07 Score=90.98 Aligned_cols=102 Identities=15% Similarity=0.125 Sum_probs=69.7
Q ss_pred EEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHH
Q 010318 161 RFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKE 240 (513)
Q Consensus 161 ~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~ 240 (513)
.+.++|| +++|...+...++.+|++|+|+|+++..+ .+ ....+.+..++..++| +|+|+||+|+ .+ ..
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~--s~---~~l~~~l~~~~~~~~p-iilv~NK~DL--~~--~~ 131 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPET--ST---YIIDKFLVLAEKNELE-TVMVINKMDL--YD--ED 131 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCC--CH---HHHHHHHHHHHHTTCE-EEEEECCGGG--CC--HH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCC--CH---HHHHHHHHHHHHCCCC-EEEEEeHHHc--CC--ch
Confidence 7899999 88887777777899999999999997531 01 1223344445557888 8999999999 32 11
Q ss_pred HHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 241 RYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 241 ~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.. +++..+++.++- . .+++++||++|.|+.+++.
T Consensus 132 ~v----~~~~~~~~~~~~---~-~~~~~~SAktg~gv~~lf~ 165 (301)
T 1u0l_A 132 DL----RKVRELEEIYSG---L-YPIVKTSAKTGMGIEELKE 165 (301)
T ss_dssp HH----HHHHHHHHHHTT---T-SCEEECCTTTCTTHHHHHH
T ss_pred hH----HHHHHHHHHHhh---h-CcEEEEECCCCcCHHHHHH
Confidence 11 223333333320 1 4799999999999998653
No 220
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.28 E-value=2.6e-06 Score=87.28 Aligned_cols=85 Identities=14% Similarity=0.184 Sum_probs=59.5
Q ss_pred cCcEEEeeeEEEEeCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCC---ccc----ccccCCcchHHHHHHHH
Q 010318 144 KGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKG---EFE----TGFEKGGQTREHVMLAK 216 (513)
Q Consensus 144 ~giTi~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g---~~e----~~~~~~~qt~e~l~~~~ 216 (513)
+..|+.+....|..++..+.|+||+|+++|.+.+....+.++++|+|+|.+.- ..| ..|+ .....+..+.
T Consensus 201 r~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~---e~~~~~~~i~ 277 (402)
T 1azs_C 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQ---EALNLFKSIW 277 (402)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHH---HHHHHHHHHH
T ss_pred ccceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHH---HHHHHHHHHH
Confidence 33455455566777889999999999999999999999999999999999861 000 0010 1222222222
Q ss_pred H----cCCCeEEEEEeeccC
Q 010318 217 T----LGVTKLLLVVNKMDD 232 (513)
Q Consensus 217 ~----~~ip~~ivviNK~D~ 232 (513)
. .++| +|++.||+|+
T Consensus 278 ~~~~~~~~p-iiLvgNK~DL 296 (402)
T 1azs_C 278 NNRWLRTIS-VILFLNKQDL 296 (402)
T ss_dssp TCTTCSSCC-EEEEEECHHH
T ss_pred hcccCCCCe-EEEEEEChhh
Confidence 2 2577 9999999998
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.21 E-value=2.4e-06 Score=83.69 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=59.9
Q ss_pred EEeCCCCc-chHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHH
Q 010318 164 ILDAPGHK-SYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERY 242 (513)
Q Consensus 164 liDtPGh~-~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~ 242 (513)
+-+.|||. +..+.+...+..+|+++.|+||..+.. ......-.++ .+.| .++++||+|+ .+ ...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~-------~~~~~l~~~l--~~kp-~ilVlNK~DL--~~--~~~- 67 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMS-------SRNPMIEDIL--KNKP-RIMLLNKADK--AD--AAV- 67 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTT-------TSCHHHHHHC--SSSC-EEEEEECGGG--SC--HHH-
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCc-------cCCHHHHHHH--CCCC-EEEEEECccc--CC--HHH-
Confidence 45679997 567788888999999999999998742 1111111121 3566 7899999999 43 111
Q ss_pred HHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 243 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 243 ~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.+....+++..| ++++++||.+|.|+.++.+
T Consensus 68 ---~~~~~~~~~~~g------~~~i~iSA~~~~gi~~L~~ 98 (282)
T 1puj_A 68 ---TQQWKEHFENQG------IRSLSINSVNGQGLNQIVP 98 (282)
T ss_dssp ---HHHHHHHHHTTT------CCEEECCTTTCTTGGGHHH
T ss_pred ---HHHHHHHHHhcC------CcEEEEECCCcccHHHHHH
Confidence 122233444333 4799999999999998654
No 222
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.20 E-value=1.2e-06 Score=88.64 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=47.9
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCC-------CcccccccCCcchHHHHHHHHH----cCCCeEEEE
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK-------GEFETGFEKGGQTREHVMLAKT----LGVTKLLLV 226 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~-------g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivv 226 (513)
....+.|+||+|+++|.+.+....+.++++|+|+|.++ ......| ......+..+.. .++| +|++
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~---~~~~~~~~~i~~~~~~~~~p-iiLv 256 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRM---METKELFDWVLKQPCFEKTS-FMLF 256 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHH---HHHHHHHHHHHTCGGGSSCE-EEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHH---HHHHHHHHHHHhccccCCCe-EEEE
Confidence 34789999999999999999999999999999999861 1000000 012222222222 2577 9999
Q ss_pred EeeccC
Q 010318 227 VNKMDD 232 (513)
Q Consensus 227 iNK~D~ 232 (513)
.||+|+
T Consensus 257 gNK~DL 262 (354)
T 2xtz_A 257 LNKFDI 262 (354)
T ss_dssp EECHHH
T ss_pred EECcch
Confidence 999998
No 223
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.17 E-value=8.5e-07 Score=95.11 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=23.6
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHH
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
..+..+|+|+|.+|+|||||+|+|++.
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~ 61 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGK 61 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCC
Confidence 456789999999999999999999643
No 224
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.07 E-value=6.3e-06 Score=85.54 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=40.9
Q ss_pred CCeEEEEEeCCCCcchHHHHHH------hhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeec
Q 010318 158 ETTRFTILDAPGHKSYVPNMIS------GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 230 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~------~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~ 230 (513)
.++.+.||||||...+...+.. .+..+|.+++|+|+..|. .....+.... ..++. -|++||+
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---------~~~~~~~~f~~~l~i~--gvVlnK~ 250 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---------DAANTAKAFNEALPLT--GVVLTKV 250 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---------THHHHHHHHHHHSCCC--CEEEECT
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---------HHHHHHHHHhccCCCe--EEEEecC
Confidence 5788999999997654222222 234789999999998761 2233332222 24443 3689999
Q ss_pred cC
Q 010318 231 DD 232 (513)
Q Consensus 231 D~ 232 (513)
|.
T Consensus 251 D~ 252 (433)
T 2xxa_A 251 DG 252 (433)
T ss_dssp TS
T ss_pred CC
Confidence 97
No 225
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.05 E-value=1.8e-06 Score=85.46 Aligned_cols=96 Identities=18% Similarity=0.203 Sum_probs=62.3
Q ss_pred CcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhh
Q 010318 170 HKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKM 249 (513)
Q Consensus 170 h~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l 249 (513)
+++|....-..++.+|.+++|+|++++.+. + ....+.+..+...++| +|+|+||+|+ .+ +..+. ..+++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s--~---~~l~~~l~~~~~~~~~-~ilV~NK~DL--~~--~~~v~-~~~~~ 134 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFN--N---YLLDNMLVVYEYFKVE-PVIVFNKIDL--LN--EEEKK-ELERW 134 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCC--H---HHHHHHHHHHHHTTCE-EEEEECCGGG--CC--HHHHH-HHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCC--H---HHHHHHHHHHHhCCCC-EEEEEEcccC--CC--ccccH-HHHHH
Confidence 444433333468899999999999976321 1 1233455566677898 8899999999 33 11111 12233
Q ss_pred HhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 250 TPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 250 ~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
..+++..| ++++++||++|.|++++.+
T Consensus 135 ~~~~~~~g------~~~~~~SA~~g~gi~~L~~ 161 (302)
T 2yv5_A 135 ISIYRDAG------YDVLKVSAKTGEGIDELVD 161 (302)
T ss_dssp HHHHHHTT------CEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHCC------CeEEEEECCCCCCHHHHHh
Confidence 34444444 4799999999999998754
No 226
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.05 E-value=1.9e-05 Score=78.84 Aligned_cols=94 Identities=12% Similarity=0.176 Sum_probs=56.2
Q ss_pred CeEEEEEeCCCCcc----hHHHHHH--hhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeecc
Q 010318 159 TTRFTILDAPGHKS----YVPNMIS--GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKMD 231 (513)
Q Consensus 159 ~~~i~liDtPGh~~----f~~~~~~--~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~D 231 (513)
++.+.++||+|... +...+.. .+-.+|-.++|+|+..+ .+..+.+..+. ..++. ++++||+|
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---------~~~~~~~~~~~~~~~it--~iilTKlD 279 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---------NAIVEQARQFNEAVKID--GIILTKLD 279 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---------THHHHHHHHHHHHSCCC--EEEEECGG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---------HHHHHHHHHHHHhcCCC--EEEEeCcC
Confidence 45677899999643 2222211 12358999999998876 24445444444 45666 57899999
Q ss_pred CCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 232 DHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 232 ~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
.. ..+. .+. ..+...+ .|+..++ +|++++++.
T Consensus 280 ~~-a~~G-----~~l----~~~~~~~------~pi~~i~--~Ge~v~dl~ 311 (328)
T 3e70_C 280 AD-ARGG-----AAL----SISYVID------APILFVG--VGQGYDDLR 311 (328)
T ss_dssp GC-SCCH-----HHH----HHHHHHT------CCEEEEE--CSSSTTCEE
T ss_pred Cc-cchh-----HHH----HHHHHHC------CCEEEEe--CCCCccccc
Confidence 72 2221 111 2233333 4677776 799987753
No 227
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.02 E-value=3.5e-06 Score=82.48 Aligned_cols=59 Identities=22% Similarity=0.242 Sum_probs=35.3
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEeCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFETET 159 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 159 (513)
.+.++|+++|.+|+|||||+|+|+....... ....|.|.+.....+ +
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~------------------------------~~~~g~T~~~~~~~~---~ 164 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKT------------------------------GDRPGITTSQQWVKV---G 164 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------------------------------------CCEEE---T
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeec------------------------------CCCCCeeeeeEEEEe---C
Confidence 4568999999999999999999964321111 112456655433222 4
Q ss_pred eEEEEEeCCCCc
Q 010318 160 TRFTILDAPGHK 171 (513)
Q Consensus 160 ~~i~liDtPGh~ 171 (513)
..+.++||||..
T Consensus 165 ~~~~l~DtpG~~ 176 (282)
T 1puj_A 165 KELELLDTPGIL 176 (282)
T ss_dssp TTEEEEECCCCC
T ss_pred CCEEEEECcCcC
Confidence 579999999964
No 228
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.86 E-value=2.8e-05 Score=79.03 Aligned_cols=104 Identities=14% Similarity=0.101 Sum_probs=63.9
Q ss_pred EEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHH
Q 010318 162 FTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKER 241 (513)
Q Consensus 162 i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~ 241 (513)
+.-+++| +++|.+........+|++|+|+|+.+... .+ .....+.+ .+.| +++|+||+|+...+..
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~--~~~l~~~l-----~~~p-iilV~NK~DLl~~~~~--- 116 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNG--SF--IPGLPRFA-----ADNP-ILLVGNKADLLPRSVK--- 116 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGG--GC--CSSHHHHC-----TTSC-EEEEEECGGGSCTTCC---
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCC--ch--hhHHHHHh-----CCCC-EEEEEEChhcCCCccC---
Confidence 3344554 77888877776788999999999997531 11 12222221 2567 8899999999532211
Q ss_pred HHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 242 YDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 242 ~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
.+.+.+.+..+++..|+. ..+++++||++|.|+.++.+
T Consensus 117 ~~~~~~~l~~~~~~~g~~---~~~v~~iSA~~g~gi~~L~~ 154 (369)
T 3ec1_A 117 YPKLLRWMRRMAEELGLC---PVDVCLVSAAKGIGMAKVME 154 (369)
T ss_dssp HHHHHHHHHHHHHTTTCC---CSEEEECBTTTTBTHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC---cccEEEEECCCCCCHHHHHH
Confidence 233444455556666653 23789999999999998644
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.83 E-value=2.9e-05 Score=75.04 Aligned_cols=87 Identities=16% Similarity=0.113 Sum_probs=55.1
Q ss_pred CCCcchH-HHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHH
Q 010318 168 PGHKSYV-PNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIE 246 (513)
Q Consensus 168 PGh~~f~-~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~ 246 (513)
|||.... +.+...+..+|++|.|+||..+..... +.. + ++ +.| .++++||+|+ ++ ....
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~----~~l-~---ll---~k~-~iivlNK~DL--~~--~~~~---- 64 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSA----YGV-D---FS---RKE-TIILLNKVDI--AD--EKTT---- 64 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSC----TTS-C---CT---TSE-EEEEEECGGG--SC--HHHH----
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcC----hHH-H---hc---CCC-cEEEEECccC--CC--HHHH----
Confidence 8997664 567778899999999999998754211 111 1 12 777 7899999999 43 1122
Q ss_pred hhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 247 SKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 247 ~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+....++++.|+ ++ ++||.+|.|+.++.
T Consensus 65 ~~~~~~~~~~g~------~v-~iSa~~~~gi~~L~ 92 (262)
T 3cnl_A 65 KKWVEFFKKQGK------RV-ITTHKGEPRKVLLK 92 (262)
T ss_dssp HHHHHHHHHTTC------CE-EECCTTSCHHHHHH
T ss_pred HHHHHHHHHcCC------eE-EEECCCCcCHHHHH
Confidence 222334444443 56 99999999998754
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.72 E-value=3.5e-05 Score=76.12 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=57.7
Q ss_pred hhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCc
Q 010318 180 GASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYN 259 (513)
Q Consensus 180 ~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~ 259 (513)
.++.+|.+++|+|+..+.+. .....+.+..+...++| .++|+||+|+. +.. ..++..+.+..++...|+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~-----~~~i~r~L~~~~~~~~~-~vivlnK~DL~--~~~--~~~~~~~~~~~~y~~~g~- 151 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFS-----TALLDRFLVLVEANDIQ-PIICITKMDLI--EDQ--DTEDTIQAYAEDYRNIGY- 151 (307)
T ss_dssp TEECCCEEEEEEESTTTTCC-----HHHHHHHHHHHHTTTCE-EEEEEECGGGC--CCH--HHHHHHHHHHHHHHHHTC-
T ss_pred HHHhCCEEEEEEeCCCCCCC-----HHHHHHHHHHHHHCCCC-EEEEEECCccC--chh--hhHHHHHHHHHHHHhCCC-
Confidence 47899999999999987642 11223333344557888 78999999994 311 111122334445555554
Q ss_pred ccCCeeEEEeecccccccccccc
Q 010318 260 VKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 260 ~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+++++||.+|.|+.+|.+
T Consensus 152 -----~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 152 -----DVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp -----CEEECCHHHHTTCTTTGG
T ss_pred -----eEEEEecCCCCCHHHHHh
Confidence 689999999999988654
No 231
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.72 E-value=6.5e-05 Score=69.36 Aligned_cols=94 Identities=11% Similarity=0.017 Sum_probs=58.1
Q ss_pred CCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHH----HHHH----cCCCeEEEEEeec-cCCCCCchH
Q 010318 169 GHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVM----LAKT----LGVTKLLLVVNKM-DDHTVNWSK 239 (513)
Q Consensus 169 Gh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~----~~~~----~~ip~~ivviNK~-D~~~~~~~~ 239 (513)
|+.++...+-.+...+|++|+|||+++... ...++.+. ++.. .++| ++|+.||. |++.+- +
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R-------~eak~EL~eL~~mL~ee~~L~gap-LLVlANKqqDlp~Am-s- 180 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKR-------HEWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRM-P- 180 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCC-------CCHHHHHHHHHHHSCTTSSCSCSC-EEEEEEESSTTSCBC-C-
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhH-------HHHHHHHHHHHHHhcchhhhCCCe-EEEEeCCCcCccCCC-C-
Confidence 788888888888899999999999987532 12444331 2211 3678 88899996 775432 2
Q ss_pred HHHHHHHhhhHhhhhhccCcccCCeeEEEeecccccccccc
Q 010318 240 ERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTR 280 (513)
Q Consensus 240 ~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l 280 (513)
..++.+.+. |..+. ..+.+.++||++|+|+.+-
T Consensus 181 --~~EI~e~L~--L~~l~----R~W~Iq~csA~TGeGL~EG 213 (227)
T 3l82_B 181 --CFYLAHELH--LNLLN----HPWLVQDTEAETLTGFLNG 213 (227)
T ss_dssp --HHHHHHHTT--GGGGC----SCEEEEEEETTTCTTHHHH
T ss_pred --HHHHHHHcC--CcCCC----CCEEEEEeECCCCcCHHHH
Confidence 224444432 22221 3688999999999999874
No 232
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.72 E-value=4.8e-05 Score=79.47 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=39.6
Q ss_pred CCeEEEEEeCCCCcchHHH-------HHHhhh-----hcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEE
Q 010318 158 ETTRFTILDAPGHKSYVPN-------MISGAS-----QADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLL 224 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~-------~~~~~~-----~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~i 224 (513)
.++.+.||||+|....-.. +.+.++ .++-++||+|+..|- .....+.... .+++. .
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq---------~al~~ak~f~~~~~it--g 442 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ---------NAVSQAKLFHEAVGLT--G 442 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH---------HHHHHHHHHHHHTCCS--E
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH---------HHHHHHHHHHhhcCCC--E
Confidence 4566889999996433111 122111 377899999998761 2233333333 46777 3
Q ss_pred EEEeeccC
Q 010318 225 LVVNKMDD 232 (513)
Q Consensus 225 vviNK~D~ 232 (513)
+++||+|-
T Consensus 443 vIlTKLD~ 450 (503)
T 2yhs_A 443 ITLTKLDG 450 (503)
T ss_dssp EEEECGGG
T ss_pred EEEEcCCC
Confidence 68999997
No 233
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.71 E-value=4.1e-05 Score=77.79 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=62.5
Q ss_pred CCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhh
Q 010318 169 GHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESK 248 (513)
Q Consensus 169 Gh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~ 248 (513)
..++|.+.+....+.+|++|+|+|+.+.. ..+. ....+. ..+.| +++|+||+|+...... .+.+.+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~--~~~~--~~l~~~-----~~~~p-~ilV~NK~DL~~~~~~---~~~~~~~ 121 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN--GSWL--PGLHRF-----VGNNK-VLLVGNKADLIPKSVK---HDKVKHW 121 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH--HHCC--TTHHHH-----SSSSC-EEEEEECGGGSCTTSC---HHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc--ccHH--HHHHHH-----hCCCc-EEEEEEChhcCCcccC---HHHHHHH
Confidence 35678777766677888999999998631 1111 111111 12677 8899999999432211 2334444
Q ss_pred hHhhhhhccCcccCCeeEEEeecccccccccccc
Q 010318 249 MTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVD 282 (513)
Q Consensus 249 l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~ 282 (513)
+..+++..|+. ..+++.+||++|.|+.++.+
T Consensus 122 l~~~~~~~g~~---~~~v~~iSA~~g~gi~~L~~ 152 (368)
T 3h2y_A 122 MRYSAKQLGLK---PEDVFLISAAKGQGIAELAD 152 (368)
T ss_dssp HHHHHHHTTCC---CSEEEECCTTTCTTHHHHHH
T ss_pred HHHHHHHcCCC---cccEEEEeCCCCcCHHHHHh
Confidence 45556666653 23789999999999998654
No 234
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.61 E-value=7.4e-05 Score=59.93 Aligned_cols=77 Identities=16% Similarity=0.279 Sum_probs=66.2
Q ss_pred EEEEEEE--ccCCeEEEEEEEeeeecCCCEEEEecCCc---EEEEEEEEECCeeecccCCCCeEEEEeccCCcccceeee
Q 010318 314 MPIIDKF--KDMGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEEDILSGF 388 (513)
Q Consensus 314 ~~i~~~~--~~~G~vv~g~v~sG~l~~gd~v~~~p~~~---~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~~i~~G~ 388 (513)
..|.++| +..|+++.++|.+|.++.+..+.+...+. ..++.||.++..++.++..|.-|+|.|.+. ++++.||
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr~KddV~EV~~G~ECGi~l~~~--~dik~GD 86 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKRYKDDVREVAQGYECGLTIKNF--NDIKEGD 86 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEECSSSCCSCCBTTCEEEEECTTC--SSCSSCS
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcccccccceECCCcEEEEEEcCc--CCCCCCC
Confidence 4455566 35699999999999999999999999883 568999999999999999999999999865 4799999
Q ss_pred EEcc
Q 010318 389 VLSS 392 (513)
Q Consensus 389 vl~~ 392 (513)
+|-.
T Consensus 87 ~Ie~ 90 (99)
T 1d1n_A 87 VIEA 90 (99)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9853
No 235
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.60 E-value=0.00011 Score=79.75 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=39.5
Q ss_pred CeEEEEEeCCCCcc------------hHHHHHHh-hhh-cCEEEEEEECCCCcccccccCCcchHHHHHHHHHc---CCC
Q 010318 159 TTRFTILDAPGHKS------------YVPNMISG-ASQ-ADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---GVT 221 (513)
Q Consensus 159 ~~~i~liDtPGh~~------------f~~~~~~~-~~~-~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---~ip 221 (513)
...++|+|.||... -+..++.. +.. ..+++++++++... .+...+.+++.. |.+
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~---------a~~~~l~la~~v~~~g~r 216 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI---------ATTEALSMAQEVDPEGDR 216 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT---------TTCHHHHHHHHHCSSCCS
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh---------ccHHHHHHHHHHhhcCCc
Confidence 45799999998432 13333333 333 36677777776542 233445555554 667
Q ss_pred eEEEEEeeccCC
Q 010318 222 KLLLVVNKMDDH 233 (513)
Q Consensus 222 ~~ivviNK~D~~ 233 (513)
.|+|+||+|+.
T Consensus 217 -tI~VlTK~Dlv 227 (608)
T 3szr_A 217 -TIGILTKPDLV 227 (608)
T ss_dssp -EEEEEECGGGS
T ss_pred -eEEEecchhhc
Confidence 78999999995
No 236
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.57 E-value=0.00022 Score=70.38 Aligned_cols=64 Identities=20% Similarity=0.277 Sum_probs=40.0
Q ss_pred CeEEEEEeCCCCcchHHHHHH-------h-----hhhcCEEEEEEECCCCcccccccCCcchHHHHHHH-HHcCCCeEEE
Q 010318 159 TTRFTILDAPGHKSYVPNMIS-------G-----ASQADIGVLVISARKGEFETGFEKGGQTREHVMLA-KTLGVTKLLL 225 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~-------~-----~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~-~~~~ip~~iv 225 (513)
++.+.++||+|.......... . +..++.++|++|+..+ ....+.+..+ ...++. +|
T Consensus 184 ~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~---------~~~~~~~~~~~~~~~~t--~i 252 (304)
T 1rj9_A 184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG---------QNGLEQAKKFHEAVGLT--GV 252 (304)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC---------THHHHHHHHHHHHHCCS--EE
T ss_pred CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHH---------HHHHHHHHHHHHHcCCc--EE
Confidence 345679999996433221111 1 1248889999999876 2344444433 345776 57
Q ss_pred EEeeccCC
Q 010318 226 VVNKMDDH 233 (513)
Q Consensus 226 viNK~D~~ 233 (513)
++||.|..
T Consensus 253 ivTh~d~~ 260 (304)
T 1rj9_A 253 IVTKLDGT 260 (304)
T ss_dssp EEECTTSS
T ss_pred EEECCccc
Confidence 99999973
No 237
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.57 E-value=2.4e-05 Score=75.63 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
.+++++|.+|+|||||+|+|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~ 121 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKG 121 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred hheEEeCCCCCCHHHHHHHHhc
Confidence 6899999999999999999953
No 238
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.54 E-value=0.00016 Score=71.48 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=21.8
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHH
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
.+...|+++|.+|+||||++..|.+.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 34568999999999999999988643
No 239
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.45 E-value=0.00031 Score=58.31 Aligned_cols=79 Identities=11% Similarity=0.191 Sum_probs=67.5
Q ss_pred eEEEEEEEc--cCCe---EEEEEEEeeeecCCCEEEEecCCc---EEEEEEEEECCeeecccCCCCeEEEEeccCCcc-c
Q 010318 313 RMPIIDKFK--DMGT---VVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSGIEEE-D 383 (513)
Q Consensus 313 ~~~i~~~~~--~~G~---vv~g~v~sG~l~~gd~v~~~p~~~---~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~~~-~ 383 (513)
+..|.++|+ ..|+ ++.++|.+|.|+.+..+++...+. ..++.||.++..+|.++..|.-|+|.|.+. + +
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkrfKdDVkEV~~G~ECGi~l~~f--niD 89 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKHHKDDISVIKTGMDCGLSLDEE--KVE 89 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEESSSSCCSEECTTCEEEEECSCT--TSC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcccccccceecCCCEEEEEEccC--CCC
Confidence 566777773 4577 899999999999999999999884 457999999999999999999999999865 5 7
Q ss_pred ceeeeEEccC
Q 010318 384 ILSGFVLSSV 393 (513)
Q Consensus 384 i~~G~vl~~~ 393 (513)
++.||+|-..
T Consensus 90 ik~GDiIE~y 99 (120)
T 2crv_A 90 FKPGDQVICY 99 (120)
T ss_dssp CCTTEEEEEE
T ss_pred CCCCCEEEEE
Confidence 9999998543
No 240
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.37 E-value=0.00042 Score=71.39 Aligned_cols=64 Identities=23% Similarity=0.339 Sum_probs=39.4
Q ss_pred CCeEEEEEeCCCCcch----HHHH--HHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeec
Q 010318 158 ETTRFTILDAPGHKSY----VPNM--ISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 230 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f----~~~~--~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~ 230 (513)
.++.+.||||||.... +..+ +..+..+|.++||+|+..+ ......+.... ..++. -|++||+
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---------q~av~~a~~f~~~l~i~--GVIlTKl 247 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---------QEALSVARAFDEKVGVT--GLVLTKL 247 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---------THHHHHHHHHHHHTCCC--EEEEESG
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---------HHHHHHHHHHHhcCCce--EEEEeCc
Confidence 5678999999996433 2222 1122369999999999765 12333332222 34443 4689999
Q ss_pred cC
Q 010318 231 DD 232 (513)
Q Consensus 231 D~ 232 (513)
|.
T Consensus 248 D~ 249 (425)
T 2ffh_A 248 DG 249 (425)
T ss_dssp GG
T ss_pred CC
Confidence 97
No 241
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.37 E-value=0.00018 Score=70.70 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
+...++++|+.|+||||++..|.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998854
No 242
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.35 E-value=0.0004 Score=69.00 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=21.8
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHH
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
.+...|+++|..|+||||++..|.+.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988543
No 243
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.27 E-value=0.00045 Score=66.89 Aligned_cols=97 Identities=10% Similarity=0.028 Sum_probs=63.0
Q ss_pred CCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHH----HHHH---H-cCCCeEEEEEee-ccCCCCCc
Q 010318 167 APGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHV----MLAK---T-LGVTKLLLVVNK-MDDHTVNW 237 (513)
Q Consensus 167 tPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l----~~~~---~-~~ip~~ivviNK-~D~~~~~~ 237 (513)
..|+.++...+-.+...+|++|+|||+++... . ..++.+ .++. . .++| ++|+.|| -|++++-
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreR-----l--eak~EL~eL~~mL~e~~~l~~ap-LLVfANKkQDlp~Am- 264 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR-----H--EWQDEFSHIMAMTDPAFGSSGRP-LLVLSCISQGDVKRM- 264 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCC-----C--CHHHHHHHHHHHHCHHHHCTTCC-EEEEEEESSTTSCBC-
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhH-----H--HHHHHHHHHHHHhcchhhcCCCe-EEEEeCCcccccCCC-
Confidence 35788888888888999999999999987632 1 133322 2221 1 4788 8889997 5885442
Q ss_pred hHHHHHHHHhhhHhhhhhccCcccCCeeEEEeeccccccccccc
Q 010318 238 SKERYDEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 238 ~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~ 281 (513)
+ ..++.+.+. |..+. ..+.+.++||++|+|+.+-+
T Consensus 265 s---~~EI~e~L~--L~~l~----r~W~Iq~csA~tGeGL~EGl 299 (312)
T 3l2o_B 265 P---CFYLAHELH--LNLLN----HPWLVQDTEAETLTGFLNGI 299 (312)
T ss_dssp C---HHHHHHHTT--GGGGC----SCEEEEEEETTTCTTHHHHH
T ss_pred C---HHHHHHHcC--CccCC----CcEEEEecccCCCcCHHHHH
Confidence 2 224444433 22221 36789999999999998843
No 244
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.24 E-value=0.00093 Score=69.21 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=24.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHH
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
..+...|+|+|.+++|||||+|+|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 567889999999999999999999865
No 245
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.10 E-value=0.00097 Score=70.16 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=75.6
Q ss_pred HhhhccCCCCCCCCCceEEEEEEEc--cCCeEEEEEEEeeeecCCCEEEEecCC---cEEEEEEEEECCeeecccCCCCe
Q 010318 297 ALDRIEITPRDPNGPFRMPIIDKFK--DMGTVVMGKVESGSVREGDSLLVMPNK---AQVKVLAIYCDDNRVRHAGPGEN 371 (513)
Q Consensus 297 ~l~~l~~~~~~~~~~~~~~i~~~~~--~~G~vv~g~v~sG~l~~gd~v~~~p~~---~~~~V~~i~~~~~~v~~a~aG~~ 371 (513)
++..+..|.....-.-...|..+|+ ..|.++.++|..|.|+.|..+.+...+ ...+|.||++++++++++..|+-
T Consensus 394 ~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~~~k~~v~e~~~g~e 473 (501)
T 1zo1_I 394 AMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGME 473 (501)
T ss_dssp HHTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEEETTEEESEEETTCC
T ss_pred HHHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhcccCccccEECCCCE
Confidence 3343434444343344566778884 459999999999999999999998777 47899999999999999999999
Q ss_pred EEEEeccCCcccceeeeEEccC
Q 010318 372 LRIRLSGIEEEDILSGFVLSSV 393 (513)
Q Consensus 372 v~i~l~~~~~~~i~~G~vl~~~ 393 (513)
|++.+.+. .+++.||+|-..
T Consensus 474 cgi~~~~~--~~~~~gd~~~~~ 493 (501)
T 1zo1_I 474 CGIGVKNY--NDVRTGDVIEVF 493 (501)
T ss_dssp EEEEBCCC--TTCCTTCEEEEC
T ss_pred EEEEEcCc--CCCCCCCEEEEE
Confidence 99999965 479999998543
No 246
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.08 E-value=0.0019 Score=59.03 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=46.0
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC-----CCeEEEEEeeccC
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG-----VTKLLLVVNKMDD 232 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~-----ip~~ivviNK~D~ 232 (513)
..+.+.|||||+... ......+..+|.+|+++.+.... ..+...+..++..+ ++ +.+++||+|.
T Consensus 74 ~~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~-~~vv~N~~~~ 142 (206)
T 4dzz_A 74 ADYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--------FSAAGSVVTVLEAQAYSRKVE-ARFLITRKIE 142 (206)
T ss_dssp TTSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--------HHHHHHHHHHHTTSCGGGCCE-EEEEECSBCT
T ss_pred CCCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--------HHHHHHHHHHHHHHHhCCCCc-EEEEEeccCC
Confidence 357899999999763 34555677899999999987641 24555556665543 45 6889999995
No 247
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.05 E-value=0.00081 Score=67.66 Aligned_cols=83 Identities=25% Similarity=0.261 Sum_probs=52.2
Q ss_pred hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcc
Q 010318 181 ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNV 260 (513)
Q Consensus 181 ~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~ 260 (513)
+..+|.+++| +|..+.+ . .....+.+..+...+++ .|+|+||+|+ ++ .... +..+.+...+...|+
T Consensus 128 ~anvD~v~iv-~a~~P~~----~-~~~i~r~L~~a~~~~~~-~iivlNK~DL--~~--~~~~-~~~~~~~~~y~~~G~-- 193 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPEL----S-LNIIDRYLVGCETLQVE-PLIVLNKIDL--LD--DEGM-DFVNEQMDIYRNIGY-- 193 (358)
T ss_dssp EECCCEEEEE-EESTTTC----C-HHHHHHHHHHHHHHTCE-EEEEEECGGG--CC--HHHH-HHHHHHHHHHHTTTC--
T ss_pred HhcCCEEEEE-EeCCCCC----C-HHHHHHHHHHHHhcCCC-EEEEEECccC--CC--chhH-HHHHHHHHHHHhCCC--
Confidence 5789999976 5555532 1 11233344455667888 7899999999 43 1111 112233344555554
Q ss_pred cCCeeEEEeeccccccccccc
Q 010318 261 KKDVQFLPISGLMGLNMKTRV 281 (513)
Q Consensus 261 ~~~~~iipiSa~~g~gi~~l~ 281 (513)
+++++||.+|.|+.++.
T Consensus 194 ----~v~~~Sa~~~~gl~~L~ 210 (358)
T 2rcn_A 194 ----RVLMVSSHTQDGLKPLE 210 (358)
T ss_dssp ----CEEECBTTTTBTHHHHH
T ss_pred ----cEEEEecCCCcCHHHHH
Confidence 68999999999998764
No 248
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.81 E-value=0.0027 Score=62.19 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=38.3
Q ss_pred CCeEEEEEeCCCCcch----HHHHHHh--hhhcCEEEEEEECCCCcccccccCCcchHHHHHHHH-HcCCCeEEEEEeec
Q 010318 158 ETTRFTILDAPGHKSY----VPNMISG--ASQADIGVLVISARKGEFETGFEKGGQTREHVMLAK-TLGVTKLLLVVNKM 230 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f----~~~~~~~--~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~-~~~ip~~ivviNK~ 230 (513)
.++.+.|+||||.... +..+... ...+|.+++|+|+..+ ....+.+.... ..++. =+++||+
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~---------~~~~~~~~~~~~~~~i~--givlnk~ 247 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---------QEALSVARAFDEKVGVT--GLVLTKL 247 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---------HHHHHHHHHHHHHTCCC--EEEEECG
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc---------HHHHHHHHHHhhcCCCC--EEEEECC
Confidence 4678999999985432 2222111 1258999999998754 12333333222 34443 3689999
Q ss_pred cC
Q 010318 231 DD 232 (513)
Q Consensus 231 D~ 232 (513)
|.
T Consensus 248 d~ 249 (295)
T 1ls1_A 248 DG 249 (295)
T ss_dssp GG
T ss_pred CC
Confidence 97
No 249
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.78 E-value=0.0031 Score=62.06 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=22.0
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHH
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
.+.-.++++|+.|||||||++.|.+.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998654
No 250
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.69 E-value=0.0057 Score=56.55 Aligned_cols=65 Identities=8% Similarity=0.075 Sum_probs=46.8
Q ss_pred CCeEEEEEeCCCC-cchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc-CCCeEEEEEeeccC
Q 010318 158 ETTRFTILDAPGH-KSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL-GVTKLLLVVNKMDD 232 (513)
Q Consensus 158 ~~~~i~liDtPGh-~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~-~ip~~ivviNK~D~ 232 (513)
..+.+.|||||+. ... .+...+..+|.+|+++.+..... ..+...+..+... +.+ +.+++|++|.
T Consensus 66 ~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~-------~~~~~~~~~l~~~~~~~-~~vv~N~~~~ 132 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALAL-------DALMLTIETLQKLGNNR-FRILLTIIPP 132 (209)
T ss_dssp GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHH-------HHHHHHHHHHHHTCSSS-EEEEECSBCC
T ss_pred hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhH-------HHHHHHHHHHHhccCCC-EEEEEEecCC
Confidence 4578999999997 443 23445678999999998875422 2455566666664 666 7899999997
No 251
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.65 E-value=0.0038 Score=62.85 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=22.0
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHH
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
.+.-.++++|..|||||||++.|.+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 34568999999999999999998654
No 252
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.55 E-value=0.006 Score=64.71 Aligned_cols=178 Identities=12% Similarity=0.124 Sum_probs=121.3
Q ss_pred EeCCCCcchHHHHHHhhhh-cCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEe-eccCCCCCchHHHH
Q 010318 165 LDAPGHKSYVPNMISGASQ-ADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVN-KMDDHTVNWSKERY 242 (513)
Q Consensus 165 iDtPGh~~f~~~~~~~~~~-~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviN-K~D~~~~~~~~~~~ 242 (513)
-|+-|.-.-+...+..+.. -.+-+-|+.+.-| +-|+.-+.++...+- +|+..| |.| .
T Consensus 346 ~d~~Gs~ea~~~~l~~~~~~~~~~~~i~~~~vG---------~i~~~Dv~~a~~~~a--~i~~fnv~~~-------~--- 404 (537)
T 3izy_P 346 GDVDGSVEAILNVMDTYDASHECELDLVHFGVG---------DISENDVNLAETFHG--VIYGFNVNAG-------N--- 404 (537)
T ss_dssp BCCHHHHHHHHHHHHHCCCCSSCCCCBSCCCBS---------CBCHHHHHHHHHHSC--CEEESSCCBC-------H---
T ss_pred eCCcchHHHHHHHHHhcCCCCcEEEEEEEecCC---------CCCHHHHHHHHhcCC--eEEEecCCCC-------H---
Confidence 3777766666666666554 4566777777766 578888888888764 567777 222 1
Q ss_pred HHHHhhhHhhhhhccCcccCCeeEEEeecccccccccccccCCCCCCCcchHHHHhhhccCCCCCCCCCceEEEEEEEc-
Q 010318 243 DEIESKMTPFLKASGYNVKKDVQFLPISGLMGLNMKTRVDKSLCPWWNGPCLFEALDRIEITPRDPNGPFRMPIIDKFK- 321 (513)
Q Consensus 243 ~~i~~~l~~~l~~~g~~~~~~~~iipiSa~~g~gi~~l~~~~~~~w~~g~~L~~~l~~l~~~~~~~~~~~~~~i~~~~~- 321 (513)
.......+.|. .+..- .=|-++++. +.+.+..+..|.....-.-++.|..+|+
T Consensus 405 -----~~~~~a~~~~v------~i~~~-----~iiy~l~~~----------~~~~~~~~l~~~~~e~~~g~a~v~~~f~~ 458 (537)
T 3izy_P 405 -----VIQQLAAKKGV------KIKLH-----KIIYRLIED----------LQEELSSRLPCIVEEHPIGEASILATFSI 458 (537)
T ss_dssp -----HHHHHHHHHTC------CCBCS-----CSSCCSHHH----------HHHHHSSSSSCSSSCCCSSEEEEEEEESS
T ss_pred -----HHHHHHHHcCC------eEEEe-----ChHHHHHHH----------HHHHHHhccCCceEEEEEEEEEEcCcEEE
Confidence 11122222222 22111 112233221 4455555555555555556888899984
Q ss_pred --c--CCeEEEEEEEeeeecCCCEEEEecCCc---EEEEEEEEECCeeecccCCCCeEEEEecc-CCcccceeeeEEc
Q 010318 322 --D--MGTVVMGKVESGSVREGDSLLVMPNKA---QVKVLAIYCDDNRVRHAGPGENLRIRLSG-IEEEDILSGFVLS 391 (513)
Q Consensus 322 --~--~G~vv~g~v~sG~l~~gd~v~~~p~~~---~~~V~~i~~~~~~v~~a~aG~~v~i~l~~-~~~~~i~~G~vl~ 391 (513)
+ .|+++.++|..|.|+.|..+.+...+. ..++.||.++..++.++..|.-|+|.+.+ . .+++.||+|-
T Consensus 459 ~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk~~k~~v~ev~~g~ecgi~~~~~~--~~~~~gd~ie 534 (537)
T 3izy_P 459 TEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLKHHKDDTSVVKTGMDCGLSLDEEK--IEFKVGDAII 534 (537)
T ss_dssp CSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCCCSSCCCSEEETTCEEEEESSSSC--SSCSCCCEEE
T ss_pred CCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhcccCcccceEcCCCEEEEEEcCcc--cCCCCCCEEE
Confidence 2 578999999999999999999998774 56888999999999999999999999996 4 4799999983
No 253
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.33 E-value=0.015 Score=62.64 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=68.1
Q ss_pred CCceEEEE--EEEc-cCCeEEEEEEEeeeecCCCEEEEecCC-cEEEEEEEEECCeeecccCCCCeEEEEeccCC-cccc
Q 010318 310 GPFRMPII--DKFK-DMGTVVMGKVESGSVREGDSLLVMPNK-AQVKVLAIYCDDNRVRHAGPGENLRIRLSGIE-EEDI 384 (513)
Q Consensus 310 ~~~~~~i~--~~~~-~~G~vv~g~v~sG~l~~gd~v~~~p~~-~~~~V~~i~~~~~~v~~a~aG~~v~i~l~~~~-~~~i 384 (513)
.|..+.|. .+|+ ..|.++.++|..|.|+.|..+.+ +.+ ...+|.||++++++++++..|+-|+|.+.+.. ..++
T Consensus 462 ~~~~~~i~~~~~f~~~~~~i~g~~v~~G~~~~~~~~~~-~~~~~~g~i~sl~~~k~~v~~~~~g~e~gi~~~~~~~~~~~ 540 (594)
T 1g7s_A 462 KPASIRLIPKLVFRQSKPAIGGVEVLTGVIRQGYPLMN-DDGETVGTVESMQDKGENLKSASRGQKVAMAIKDAVYGKTI 540 (594)
T ss_dssp CCEEEEEEEEEEEECSSSEEEEEEEEEEEEETTCEEEC-TTSCEEEEEEEEEETTEEESEEETTCCEEEEEETCCBTTTB
T ss_pred eeEEEEEecceEEcCCCCeEEEEEEecCEEecCCeEEe-cCCcEEEEEehhcccCccccccCCCCEEEEEEeCcccCCCC
Confidence 45555555 5773 45899999999999999999998 544 67899999999999999999999999998642 2679
Q ss_pred eeeeEEccC
Q 010318 385 LSGFVLSSV 393 (513)
Q Consensus 385 ~~G~vl~~~ 393 (513)
+.||+|-..
T Consensus 541 ~~~d~~~~~ 549 (594)
T 1g7s_A 541 HEGDTLYVD 549 (594)
T ss_dssp CTTCEEEEC
T ss_pred CCCCEEEEE
Confidence 999998654
No 254
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.68 E-value=0.0027 Score=62.53 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.4
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-..++++|++|+|||||+|.|+.
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHhcc
Confidence 35899999999999999999954
No 255
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.38 E-value=0.021 Score=53.51 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=46.6
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC--CCeEEEEEeeccC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMDD 232 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~--ip~~ivviNK~D~ 232 (513)
.+.+.|||||+.... .....+..+|.+|+|+.+..... ..+...+..++..+ .+.+-+++|++|.
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~v~N~~~~ 184 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSL-------RRAGQLLKLCKEFEKPISRIEIILNRADT 184 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHH-------HHHHHHHHHHHTCSSCCSCEEEEEESTTS
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHH-------HHHHHHHHHHHHhCCCccceEEEEecCCC
Confidence 467999999986543 33445778999999998775322 24556666676666 4447889999996
No 256
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.35 E-value=0.019 Score=56.23 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=42.5
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH----cCCCeEEEEEeeccC
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT----LGVTKLLLVVNKMDD 232 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~----~~ip~~ivviNK~D~ 232 (513)
..+.+.|||||+..... .+...+..+|.+|+|+.+..... ..+...+..++. .+++.+-+++||++.
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSI-------YAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHH-------HHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHH-------HHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 35789999999854422 12344678999999998764321 134444555554 345523389999995
No 257
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.15 E-value=0.015 Score=56.97 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=19.5
Q ss_pred eEEEEEecCCCChHHHHhHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll 103 (513)
..++++|+.|+|||||+|.|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999996
No 258
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.09 E-value=0.012 Score=52.98 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHhHHHHHh
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
+++++|++|+|||||++.|....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999996554
No 259
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.91 E-value=0.18 Score=51.98 Aligned_cols=137 Identities=15% Similarity=0.101 Sum_probs=69.1
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEEEEe-
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAHFET- 157 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~~~~- 157 (513)
..+...|+|+|...+|||+|+|.|+...+...... -+ ...+.....+.| .....-...||=+.........
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~--w~----~~~~~~~~gF~~--~~~~~~~TkGIWmw~~p~~~~~~ 135 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVD--WV----GDYNEPLTGFSW--RGGSERETTGIQIWSEIFLINKP 135 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTT--TT----CCTTCCCCSSCC--CCSSSCCCCSEEEESSCEEEECT
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccc--cc----cccccCCCCcee--CCCCCCcCceEEEecCcccccCC
Confidence 46788899999999999999998864331100000 00 000000000111 1111112356554433333332
Q ss_pred --CCeEEEEEeCCCCcch-----HHHHHHhhh--hcCEEEEEEECCCCcccccccCCcchHHHHHHHHHc----------
Q 010318 158 --ETTRFTILDAPGHKSY-----VPNMISGAS--QADIGVLVISARKGEFETGFEKGGQTREHVMLAKTL---------- 218 (513)
Q Consensus 158 --~~~~i~liDtPGh~~f-----~~~~~~~~~--~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~---------- 218 (513)
.+..+.|+||.|..+- ....+.++. .+++.|+=+... + ..+..++|.+...+
T Consensus 136 ~g~~~~vlllDTEG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~--i-------~~~~L~~L~~~tel~~~i~~~~~~ 206 (457)
T 4ido_A 136 DGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQN--V-------QEDDLQHLQLFTEYGRLAMEETFL 206 (457)
T ss_dssp TSCEEEEEEEEECCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESS--C-------CHHHHHHHHHHHHHHHHHSCCCSS
T ss_pred CCCeeEEEEEeccCCCCcccCccccHHHHHHHHHHhhheeeccccc--C-------CHHHHHHHHHHHHHHHHHhhhccc
Confidence 2356999999995433 223344443 567666655543 2 24566666544332
Q ss_pred -CCCeEEEEEeeccC
Q 010318 219 -GVTKLLLVVNKMDD 232 (513)
Q Consensus 219 -~ip~~ivviNK~D~ 232 (513)
-.|+++.++-=+-+
T Consensus 207 ~~Fp~f~wlvRDf~l 221 (457)
T 4ido_A 207 KPFQSLIFLVRDWSF 221 (457)
T ss_dssp CSEEEEEEEEETCCC
T ss_pred ccCCceEEEEecCCc
Confidence 14577777754443
No 260
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.68 E-value=0.048 Score=52.02 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=46.5
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
..+.+.|||||+...........+..+|.+|+|+.+..... ..+...+..++..+++.+-+++|++|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTA-------VIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCH-------HHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchH-------HHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 56889999999865432222222346899999998776532 245566667777788833389999984
No 261
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.64 E-value=0.016 Score=53.02 Aligned_cols=24 Identities=33% Similarity=0.270 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHHh
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
..++++|+.|||||||++.|+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999997543
No 262
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.61 E-value=0.02 Score=51.29 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=20.6
Q ss_pred eEEEEEecCCCChHHHHhHHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
..++++|++|||||||++.|...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999754
No 263
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.51 E-value=0.012 Score=61.56 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=21.1
Q ss_pred cceeEEEEEecCCCChHHHHhHHHH
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
.+...|.++|.+++||||+..+|..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999853
No 264
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.50 E-value=0.024 Score=52.12 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=22.3
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHH
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
.+...|+|+|++|||||||++.|...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999999988654
No 265
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.29 E-value=0.027 Score=51.59 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=22.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
+...|+|+|+.|||||||++.|....+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446799999999999999999976543
No 266
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.21 E-value=0.026 Score=51.85 Aligned_cols=25 Identities=28% Similarity=0.082 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHh
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
--.++++|+.|||||||++.|.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999996554
No 267
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.20 E-value=0.035 Score=49.18 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=23.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+...|+++|.+|||||||...|....|.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 3467999999999999999998765554
No 268
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.20 E-value=0.03 Score=51.06 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=23.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+...|+++|.+|||||||+..|....|.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4568999999999999999999776665
No 269
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.15 E-value=0.027 Score=49.74 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=22.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
..|+++|.+|||||||...|....+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999998766554
No 270
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.13 E-value=0.03 Score=50.89 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHHh
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
..++++|+.|||||||++.|....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 468999999999999999996553
No 271
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.10 E-value=0.024 Score=51.08 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChHHHHhHHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
..++++|+.|||||||++.|+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999654
No 272
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.09 E-value=0.032 Score=51.03 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.7
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
.+...|+|+|+.|+|||||+++|+...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 345678999999999999999997554
No 273
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.05 E-value=0.029 Score=50.45 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHhHHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
...++++|.+|||||||++.|...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 357999999999999999998543
No 274
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.99 E-value=0.057 Score=50.51 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=49.0
Q ss_pred eCCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 157 TETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 157 ~~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
...+.+.|||||+.... .....+..+|.+|+|+.+..... ......+.++..++++.+.+++||++.
T Consensus 129 ~~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSI-------KTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp HTCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHH-------HHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred cCCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHH-------HHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 35688999999986544 23445678999999999875322 244555567778888778899999994
No 275
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.86 E-value=0.03 Score=49.80 Aligned_cols=21 Identities=38% Similarity=0.434 Sum_probs=18.5
Q ss_pred eEEEEEecCCCChHHHHhHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll 103 (513)
-.++++|++|||||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 468999999999999999753
No 276
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.80 E-value=0.071 Score=49.63 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=48.4
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
.+.+.|||+|+... ......+..+|.+|+|+.+..... ..+...+..+...+.+.+-+++||++.
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~vv~N~~~~ 175 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCL-------TDTMKVGIVLKKAGLAILGFVLNRYGR 175 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHH-------HHHHHHHHHHHHTTCEEEEEEEEEETS
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccH-------HHHHHHHHHHHhCCCceEEEEEecCCc
Confidence 47799999998654 344566788999999998775422 245566667777787767789999996
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.78 E-value=0.037 Score=48.51 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+.|+++|.+||||||+...| ...|.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~ 26 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGA 26 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCC
Confidence 47899999999999999999 65554
No 278
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.74 E-value=0.031 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHh
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
--.++|+|+.|||||||++.|....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3568999999999999999996543
No 279
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.71 E-value=0.043 Score=51.79 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=23.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCCc
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQV 109 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~i 109 (513)
...|+|+|.+|||||||++.|....|..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4689999999999999999997655654
No 280
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.65 E-value=0.041 Score=48.27 Aligned_cols=25 Identities=16% Similarity=-0.028 Sum_probs=21.4
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhC
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
..|+++|.+||||||+...|....|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999966554
No 281
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.64 E-value=0.041 Score=50.54 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
+...|+++|++|||||||++.|....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34679999999999999999996544
No 282
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.61 E-value=0.04 Score=50.17 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
...|+|+|.+|||||||...|....|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999766554
No 283
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.57 E-value=0.038 Score=50.24 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHhHHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
...|+++|++|||||||++.|...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998543
No 284
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.54 E-value=0.045 Score=49.03 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
...++++|..|+|||||+++|+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 56789999999999999999964
No 285
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.53 E-value=0.041 Score=51.21 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=22.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
+-..++|+|+.|||||||++.|+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34578999999999999999997653
No 286
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.49 E-value=0.035 Score=55.64 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
-.++++|++|+|||||+|.|+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 47899999999999999999643
No 287
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.48 E-value=0.042 Score=48.37 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
+--.++++|+.|||||||++.|....
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34579999999999999999986543
No 288
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.47 E-value=0.048 Score=48.84 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=23.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+...|++.|.++|||||+...|....|.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3568999999999999999998766553
No 289
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.46 E-value=0.047 Score=50.47 Aligned_cols=25 Identities=20% Similarity=0.056 Sum_probs=22.2
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhC
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
.+|+|+|.+||||||+.+.|....|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999876665
No 290
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=93.39 E-value=0.089 Score=49.88 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=48.1
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
..+.+.|||+|+... ......+..+|.+|+|+.+..... ..+...+..+...+.+.+-+++|++|.
T Consensus 109 ~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~-------~~~~~~~~~l~~~~~~~~~vv~N~~~~ 174 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSI-------TDGLKTKIVAERLGTKVLGVVVNRITT 174 (263)
T ss_dssp HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHH-------HHHHHHHHHHHHHTCEEEEEEEEEECT
T ss_pred hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHH-------HHHHHHHHHHHhcCCCeeEEEEccCCc
Confidence 357899999998654 344556788999999998765322 245556666666677767789999996
No 291
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.35 E-value=0.058 Score=48.36 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=23.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+...|+++|.+||||||+...|....|.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3467999999999999999999665554
No 292
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.28 E-value=0.045 Score=48.39 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
..|+++|.+||||||+...|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999854
No 293
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.21 E-value=0.062 Score=47.96 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=22.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
...|+++|.+||||||+...|....|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999765554
No 294
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.19 E-value=0.057 Score=50.92 Aligned_cols=28 Identities=36% Similarity=0.406 Sum_probs=23.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+...|+|+|..|||||||++.|....|.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 4467999999999999999999776664
No 295
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.17 E-value=0.044 Score=49.24 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
..++++|.+|||||||++.|...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 36899999999999999999643
No 296
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.16 E-value=0.045 Score=51.09 Aligned_cols=21 Identities=33% Similarity=0.142 Sum_probs=18.9
Q ss_pred eEEEEEecCCCChHHHHhHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll 103 (513)
-.++++|+.|||||||++.|.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999884
No 297
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.14 E-value=0.043 Score=51.63 Aligned_cols=23 Identities=30% Similarity=0.163 Sum_probs=19.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
--.++|+|+.|||||||++.|.+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 34699999999999999998843
No 298
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.10 E-value=0.063 Score=53.00 Aligned_cols=29 Identities=31% Similarity=0.250 Sum_probs=24.2
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
..++..|+|+|.+|||||||++.|.....
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45667899999999999999999866543
No 299
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.09 E-value=0.049 Score=53.37 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=22.0
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHH
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
.+--.++|+|++|+|||||++.|++.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 34457999999999999999999654
No 300
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.08 E-value=0.048 Score=50.33 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
-.++++|+.|||||||++.|.+.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999988543
No 301
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.04 E-value=0.059 Score=48.00 Aligned_cols=24 Identities=17% Similarity=0.052 Sum_probs=20.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
+.+.++++|..|||||||+.+|+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999954
No 302
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.03 E-value=0.05 Score=49.66 Aligned_cols=26 Identities=27% Similarity=0.184 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
+...|+++|.+|||||||++.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44678999999999999999996544
No 303
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=93.03 E-value=0.18 Score=48.83 Aligned_cols=66 Identities=8% Similarity=0.081 Sum_probs=49.3
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
.+.+.|||||........ ...+..+|.+|+|+.+..... ....+.+..+...+++.+=+|+||+|.
T Consensus 201 ~yD~VIIDtpp~~~~~da-~~l~~~aD~vllVv~~~~~~~-------~~~~~~~~~l~~~g~~~~GvVlN~v~~ 266 (286)
T 3la6_A 201 NYDLVLIDTPPILAVTDA-AIVGRHVGTTLMVARYAVNTL-------KEVETSLSRFEQNGIPVKGVILNSIFR 266 (286)
T ss_dssp HCSEEEEECCCTTTCTHH-HHHTTTCSEEEEEEETTTSBH-------HHHHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred CCCEEEEcCCCCcchHHH-HHHHHHCCeEEEEEeCCCCcH-------HHHHHHHHHHHhCCCCEEEEEEcCccc
Confidence 356999999997655332 233568999999999886532 356667778888888766789999997
No 304
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.98 E-value=0.048 Score=51.52 Aligned_cols=22 Identities=32% Similarity=0.175 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++++|+.|||||||++.|.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999998843
No 305
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.95 E-value=0.062 Score=48.57 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=21.6
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCC
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
.|++.|.+||||||+...|....+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 6899999999999999999765553
No 306
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.94 E-value=0.044 Score=51.63 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=18.9
Q ss_pred eEEEEEecCCCChHHHHhHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll 103 (513)
-.++|+|+.|||||||++.|.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999883
No 307
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.93 E-value=0.062 Score=52.90 Aligned_cols=28 Identities=29% Similarity=0.243 Sum_probs=23.4
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
..+...|+|+|+.|||||||++.|....
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3456789999999999999999986643
No 308
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.92 E-value=0.064 Score=47.87 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=23.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
..+|+++|.+||||||+...|....|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999766553
No 309
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.92 E-value=0.066 Score=48.67 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=23.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+..+|+++|.+||||||+...|....|.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3458999999999999999999766554
No 310
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.90 E-value=0.07 Score=48.54 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=23.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+...|++.|.+||||||+...|....+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 3468999999999999999999765543
No 311
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.89 E-value=0.069 Score=47.98 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=23.6
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+...|+++|.+||||||+...|....|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4568999999999999999999765553
No 312
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.88 E-value=0.067 Score=47.32 Aligned_cols=26 Identities=19% Similarity=0.104 Sum_probs=21.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhC
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
...|.+.|.+||||||+...|....+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35789999999999999999965544
No 313
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.85 E-value=0.052 Score=49.25 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHhHHHHH
Q 010318 84 NVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
.++++|+.|+|||||++.|.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999988543
No 314
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.84 E-value=0.047 Score=51.16 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHhHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll 103 (513)
-.++++|+.|||||||++.|.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999884
No 315
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.79 E-value=0.061 Score=51.51 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
+--.++++|+.|||||||++.|+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 345799999999999999999854
No 316
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.71 E-value=0.066 Score=48.63 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=20.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhC
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
.+|+|+|.+||||||+.+.|.. .|
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TT
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CC
Confidence 4799999999999999999865 44
No 317
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.71 E-value=0.059 Score=48.16 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=22.1
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhC
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
...|++.|.+||||||+...|....+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999966544
No 318
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.70 E-value=0.07 Score=49.23 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=23.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+..+|+++|.+||||||+...|....+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4578999999999999999999766654
No 319
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.70 E-value=0.08 Score=48.03 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=24.7
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
..+...|+++|.++|||||+...|....|.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~ 46 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGI 46 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 445678999999999999999998765553
No 320
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.63 E-value=0.074 Score=48.53 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=22.0
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHH
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
.+...|+|+|.+|||||||++.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999998654
No 321
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.62 E-value=0.069 Score=48.28 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=23.3
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
++...|+|+|.+||||||+...|... |.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~ 33 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-GY 33 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-TC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-CC
Confidence 34578999999999999999988655 53
No 322
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.62 E-value=0.062 Score=48.99 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
..|+++|.+||||||+...|.. .|.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~ 27 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGV 27 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCC
Confidence 5799999999999999998855 453
No 323
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.61 E-value=0.071 Score=48.91 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=21.9
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCC
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+|+|.|.+||||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999766664
No 324
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.60 E-value=0.053 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++|+|+.|||||||++.|.+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999998843
No 325
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.58 E-value=0.059 Score=51.21 Aligned_cols=22 Identities=32% Similarity=0.253 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++|+|+.|||||||++.|.+
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998854
No 326
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.56 E-value=0.053 Score=52.37 Aligned_cols=22 Identities=23% Similarity=0.042 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++|+|+.|||||||++.|.+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999998843
No 327
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.56 E-value=0.037 Score=49.45 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
..++|+|..|||||||++.|+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999854
No 328
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.53 E-value=0.059 Score=50.96 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=19.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
--.++|+|+.|||||||++.|.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34789999999999999998843
No 329
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.52 E-value=0.084 Score=47.88 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=24.3
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
.+...|++.|.+||||||+...|....|.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 34578999999999999999999766664
No 330
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.52 E-value=0.081 Score=51.47 Aligned_cols=27 Identities=41% Similarity=0.348 Sum_probs=22.7
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHH
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
..+...|+|+|.+|||||||++.|...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346688999999999999999988543
No 331
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.51 E-value=0.059 Score=51.42 Aligned_cols=22 Identities=32% Similarity=0.157 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++++|+.|||||||++.|.+
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998843
No 332
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.49 E-value=0.055 Score=51.77 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++|+|+.|||||||++.|.+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999998854
No 333
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.49 E-value=0.086 Score=49.71 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=24.8
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
++..+|++.|.+||||||+...|....|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~ 55 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCY 55 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46689999999999999999999766554
No 334
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.49 E-value=0.084 Score=48.00 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=22.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
.+...|+++|.+|||||||...|....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455789999999999999999885443
No 335
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.48 E-value=0.098 Score=46.68 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=22.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
...|++.|.+||||||+...|....|.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999998765553
No 336
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.47 E-value=0.079 Score=47.44 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.5
Q ss_pred cceeEEEEEecCCCChHHHHhHHHH
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
++...|+++|.+||||||+...|..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999998843
No 337
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=92.47 E-value=0.29 Score=46.26 Aligned_cols=65 Identities=18% Similarity=0.161 Sum_probs=42.2
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH------cCCCeE-EEEEeec
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKL-LLVVNKM 230 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~------~~ip~~-ivviNK~ 230 (513)
..+.+.|||||+..... ....+..+|.+|+|+.+..... ..+...+..+.. .+++ + -+++|++
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~-~~gvv~N~~ 179 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEYYAL-------EGVAGLLATLEEVRAGLNPRLR-LLGILVTMY 179 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESSTHHH-------HHHHHHHHHHHHHHHHTCTTCE-EEEEEEESB
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCchHHH-------HHHHHHHHHHHHHHHHhCCCce-EEEEEEEeE
Confidence 56889999999975543 3445678999999999875321 122333333332 1455 4 3899999
Q ss_pred cC
Q 010318 231 DD 232 (513)
Q Consensus 231 D~ 232 (513)
|.
T Consensus 180 ~~ 181 (257)
T 1wcv_1 180 DG 181 (257)
T ss_dssp CT
T ss_pred CC
Confidence 96
No 338
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.46 E-value=0.061 Score=51.63 Aligned_cols=23 Identities=35% Similarity=0.153 Sum_probs=19.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
--.++++|+.|||||||++.|.+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 34689999999999999998843
No 339
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.43 E-value=0.081 Score=50.06 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=23.5
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
..+...|+|.|.++|||||+...|....|
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34567899999999999999998866555
No 340
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.43 E-value=0.061 Score=51.51 Aligned_cols=22 Identities=32% Similarity=0.178 Sum_probs=19.3
Q ss_pred eeEEEEEecCCCChHHHHhHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll 103 (513)
--.++|+|+.|||||||++.|.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3468999999999999999884
No 341
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.36 E-value=0.062 Score=52.55 Aligned_cols=22 Identities=23% Similarity=0.063 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
..++++|++|+|||||++.|..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHST
T ss_pred CeEEEECCCCCcHHHHHHHhcc
Confidence 4789999999999999999954
No 342
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.34 E-value=0.064 Score=50.59 Aligned_cols=22 Identities=41% Similarity=0.317 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++++|+.|||||||++.|.+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998843
No 343
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.34 E-value=0.095 Score=46.95 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
+..+|+++|.+||||||+...|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999988655
No 344
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.32 E-value=0.075 Score=47.45 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhC
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
..|++.|.+||||||+...|....+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999966544
No 345
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.31 E-value=0.079 Score=48.63 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=21.8
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCC
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+|+|+|.+||||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999766654
No 346
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.25 E-value=0.062 Score=51.08 Aligned_cols=22 Identities=27% Similarity=0.184 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++++|+.|||||||++.|.+
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4689999999999999998843
No 347
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.24 E-value=0.074 Score=47.87 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=23.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+...|++.|.+||||||+...|....|.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3468999999999999999999766564
No 348
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.23 E-value=0.068 Score=51.31 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++|+|+.|||||||++.|.+
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998854
No 349
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.20 E-value=0.068 Score=51.23 Aligned_cols=22 Identities=36% Similarity=0.222 Sum_probs=19.4
Q ss_pred eeEEEEEecCCCChHHHHhHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll 103 (513)
--.++++|+.|||||||++.|.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEEcCCCCcHHHHHHHHH
Confidence 3468999999999999999884
No 350
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.14 E-value=0.064 Score=51.64 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++|+|+.|||||||++.|.+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999998843
No 351
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.12 E-value=0.067 Score=49.59 Aligned_cols=21 Identities=33% Similarity=0.197 Sum_probs=18.8
Q ss_pred eEEEEEecCCCChHHHHhHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll 103 (513)
-.++++|+.|||||||++.|.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999884
No 352
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.11 E-value=0.1 Score=51.17 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=23.4
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
.+...|+|+|..|||||||++.|....+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4457899999999999999999876543
No 353
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.09 E-value=0.082 Score=48.26 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
+...|++.|.+||||||+...|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998643
No 354
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.08 E-value=0.083 Score=48.71 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++|+|++|||||||+..|..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998854
No 355
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.07 E-value=0.056 Score=50.35 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=15.9
Q ss_pred eeEEEEEecCCCChHHHHhHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll 103 (513)
-..++++|+.|||||||++.|.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999999986
No 356
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.07 E-value=0.091 Score=48.76 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=23.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+...|+++|.+||||||+...|....|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3468999999999999999999766654
No 357
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.07 E-value=0.07 Score=47.41 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=18.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
+...|.+.|.+||||||+...|....|
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346799999999999999999865544
No 358
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.06 E-value=0.093 Score=49.78 Aligned_cols=28 Identities=18% Similarity=-0.021 Sum_probs=23.6
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+...|+|+|..|||||||+..|....|.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3468999999999999999998765564
No 359
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.05 E-value=0.073 Score=50.80 Aligned_cols=21 Identities=38% Similarity=0.222 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHhHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll 103 (513)
-.++|+|+.|||||||++.|.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999884
No 360
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.04 E-value=0.083 Score=48.13 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
+...|++.|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998543
No 361
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.03 E-value=0.34 Score=49.58 Aligned_cols=26 Identities=35% Similarity=0.254 Sum_probs=21.7
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHH
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
......|.++|.+|||||||..+|..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34557789999999999999999843
No 362
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.03 E-value=0.091 Score=47.86 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=22.1
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHH
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
.+...|+|+|.+|||||||++.|...
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999988653
No 363
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.02 E-value=0.077 Score=49.62 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.5
Q ss_pred eeEEEEEecCCCChHHHHhHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll 103 (513)
--.++++|++|||||||+..|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3568999999999999999886
No 364
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.01 E-value=0.082 Score=47.84 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
+...|++.|.+||||||+...|....
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999986543
No 365
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.01 E-value=0.09 Score=46.70 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=22.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
+..+|.++|.+|+||||+...|....|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 446799999999999999999865544
No 366
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.94 E-value=0.089 Score=51.84 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=22.0
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
+...++|+|..|||||||++.|+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4678899999999999999999754
No 367
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.92 E-value=0.087 Score=47.67 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=19.6
Q ss_pred EEEEecCCCChHHHHhHHHHHh
Q 010318 85 VVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 85 v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
|+|+|+.|+|||||+++|+...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999997543
No 368
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.86 E-value=0.078 Score=50.85 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHhHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll 103 (513)
-.++++|+.|||||||++.|.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~ 54 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVA 54 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999884
No 369
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.78 E-value=0.08 Score=51.19 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++|+|+.|||||||++.|.+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4689999999999999998843
No 370
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.71 E-value=0.27 Score=47.13 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=46.9
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
.+.+.|||||+....... ...+..+|.+|+|+.+..... ....+.+..+...+++.+=+++|++|.
T Consensus 191 ~yD~VIIDtpp~~~~~d~-~~l~~~aD~vilVv~~~~~~~-------~~~~~~~~~l~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVTDA-QLFSKFTGNVVYVVNSENNNK-------DEVKKGKELIEATGAKLLGVVLNRMPK 256 (271)
T ss_dssp HCSEEEEECCCTTTCSHH-HHHHHHHCEEEEEEETTSCCH-------HHHHHHHHHHHTTTCEEEEEEEEEECC
T ss_pred CCCEEEEeCCCCchHHHH-HHHHHHCCEEEEEEeCCCCcH-------HHHHHHHHHHHhCCCCEEEEEEeCCcC
Confidence 466999999996544322 223467999999999876532 355666677777788744489999997
No 371
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.71 E-value=0.082 Score=50.31 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=18.9
Q ss_pred eEEEEEecCCCChHHHHhHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll 103 (513)
-.++++|+.|||||||++.|.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999884
No 372
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.62 E-value=0.14 Score=47.49 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=24.2
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
++...|.++|.|||||+|+...|....|.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 45567889999999999999999776664
No 373
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.60 E-value=0.19 Score=49.54 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=18.2
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q 010318 84 NVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
.+.+.|+||+|||||.-++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999988854
No 374
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.58 E-value=0.1 Score=46.18 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=21.7
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCC
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+|+|+|.+||||||+...|....|.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 6999999999999999998766553
No 375
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.53 E-value=0.11 Score=48.04 Aligned_cols=27 Identities=26% Similarity=0.176 Sum_probs=23.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
...|+++|.+||||||+...|....+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467999999999999999999766664
No 376
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.53 E-value=0.089 Score=46.81 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
...++++|++|+|||||+.++..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999998854
No 377
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.42 E-value=0.12 Score=47.38 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.8
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCC
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+|++.|.+||||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~ 26 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI 26 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999766654
No 378
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.38 E-value=0.089 Score=51.15 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=19.0
Q ss_pred eEEEEEecCCCChHHHHhHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll 103 (513)
-.++|+|+.|||||||++.|.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~ 85 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIM 85 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 468999999999999999884
No 379
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.36 E-value=0.13 Score=44.98 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.4
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCC
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+|++.|.+||||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~ 26 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNI 26 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999998665553
No 380
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.35 E-value=0.1 Score=49.44 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=23.8
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhC
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
..+...|.++|.+||||||+...|....+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34557899999999999999999865543
No 381
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.34 E-value=0.13 Score=45.72 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=21.1
Q ss_pred EEEEEecCCCChHHHHhHHHHHhC
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
..+|+|+.|+|||||+.+|.+..+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 678999999999999999976654
No 382
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.33 E-value=0.1 Score=46.41 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=21.9
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
.+|+++|.+||||||+...|....|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 46999999999999999988665553
No 383
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.32 E-value=0.11 Score=52.10 Aligned_cols=24 Identities=33% Similarity=0.272 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCChHHHHhHHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
.-.++|+|+.|||||||++.|+..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 348999999999999999998643
No 384
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.32 E-value=0.11 Score=47.66 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=21.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
...|+|.|.+||||||+.+.|.. .|.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~ 29 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGI 29 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCC
Confidence 46899999999999999998854 443
No 385
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=91.30 E-value=0.11 Score=45.18 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=20.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
+...++++|++|+|||||+..+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998843
No 386
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.23 E-value=0.4 Score=46.61 Aligned_cols=66 Identities=12% Similarity=0.046 Sum_probs=49.0
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
.+.+.|||||+........ ..+..+|.+|+|+.+..... .+..+.+..+...+++.+=+++|++|.
T Consensus 213 ~yD~VIIDtpp~~~~~d~~-~l~~~ad~vilV~~~~~~~~-------~~~~~~~~~l~~~~~~~~GvVlN~~~~ 278 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVSDAA-VVGRSVGTSLLVARFGLNTA-------KEVSLSMQRLEQAGVNIKGAILNGVIK 278 (299)
T ss_dssp HCSEEEEECCCTTTCTHHH-HHGGGCSEEEEEEETTTSCT-------THHHHHHHHHHHTTCCCCCEEEEECCC
T ss_pred CCCEEEEcCCCCchhHHHH-HHHHHCCEEEEEEcCCCChH-------HHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 3569999999976543322 23478999999999876532 467777888888887744478999997
No 387
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.21 E-value=0.089 Score=52.85 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
--+++|+|+.|||||||++.|+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999854
No 388
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.20 E-value=0.059 Score=52.88 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
+--.++|+|+.|||||||++.|.+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 345799999999999999998853
No 389
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.18 E-value=0.14 Score=47.20 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=22.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
..+|+++|.++|||||+...|....|.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 467999999999999999998665553
No 390
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.17 E-value=0.082 Score=52.44 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-+++++|+.|||||||++.|+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999998854
No 391
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.09 E-value=0.11 Score=49.88 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++++|+.|||||||++.|.+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998843
No 392
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.03 E-value=0.14 Score=48.12 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=23.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
++..|+|.|.+|||||||...|....|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4578999999999999999999766664
No 393
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.02 E-value=0.11 Score=52.25 Aligned_cols=23 Identities=30% Similarity=0.127 Sum_probs=19.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
--.++|+|+.|||||||++.|.+
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 34689999999999999998854
No 394
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.97 E-value=0.13 Score=49.85 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=23.1
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
.+...|.++|.+|||||||...|....
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999997654
No 395
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.90 E-value=0.12 Score=46.18 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHhHHHHHh
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
.|++.|.+||||||+...|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999985543
No 396
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.89 E-value=0.12 Score=52.08 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
+.-.++|+|++|||||||++.|+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999954
No 397
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.83 E-value=0.15 Score=44.65 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.1
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
-+|++.|.+||||||+...|....|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999988665554
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=90.83 E-value=0.13 Score=45.58 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
+...|+++|.+||||||+...|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998844
No 399
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.60 E-value=0.11 Score=52.14 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhC
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
.-+++|+|+.|||||||++.|.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999976543
No 400
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.58 E-value=0.065 Score=48.94 Aligned_cols=21 Identities=24% Similarity=0.104 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q 010318 84 NVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
.|+|.|.+|||||||++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999853
No 401
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.56 E-value=0.14 Score=44.87 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.0
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
..|++.|.+||||||+...|....|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999998765553
No 402
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.51 E-value=0.13 Score=47.88 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=23.3
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
++...|+|.|..|||||||++.|....|
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~~g 45 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKYKN 45 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhccC
Confidence 4457899999999999999999866533
No 403
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.49 E-value=0.18 Score=45.70 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=24.1
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
..+..|++.|.++|||||+.+.|....|.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg~ 38 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYGA 38 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 35689999999999999999988665454
No 404
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.48 E-value=0.14 Score=48.72 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
...|+++|.+||||||+...|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998854
No 405
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=90.47 E-value=0.51 Score=44.65 Aligned_cols=65 Identities=9% Similarity=0.208 Sum_probs=44.7
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcC--CCeEEEEEeeccC
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLG--VTKLLLVVNKMDD 232 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~--ip~~ivviNK~D~ 232 (513)
..+.+.|||+|+..... ....+..+|.+|+|+.+..... ......+..+...+ ++ +.+++|+++.
T Consensus 143 ~~yD~viiD~pp~~~~~--~~~~l~~aD~vivv~~~~~~s~-------~~~~~~~~~l~~~~~~~~-~~vv~N~~~~ 209 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLDVT--LKNALLCSDYVIIPMTAEKWAV-------ESLDLFNFFVRKLNLFLP-IFLIITRFKK 209 (267)
T ss_dssp TTCSEEEEEECSSCSHH--HHHHHTTCSEEEEEEESCTTHH-------HHHHHHHHHHHTTTCCCC-EEEEEEEECT
T ss_pred cCCCEEEEECcCCccHH--HHHHHHHCCeEEEEeCCChHHH-------HHHHHHHHHHHHHhccCC-EEEEEecccC
Confidence 45779999999865433 4455667999999999875422 13444555566664 45 6789999965
No 406
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.44 E-value=0.17 Score=48.01 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHhHHHHHhC
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
.|+|+|.+|||||||...|....+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999965554
No 407
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.42 E-value=0.14 Score=51.41 Aligned_cols=53 Identities=23% Similarity=0.333 Sum_probs=33.1
Q ss_pred hHHHHHHHHHc-CCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEee
Q 010318 208 TREHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPIS 270 (513)
Q Consensus 208 t~e~l~~~~~~-~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiS 270 (513)
-+.-+.+++++ .-|++++ +|.|....+.....++.+.+...+++.|. .+|.+|
T Consensus 143 q~QRValArAL~~~P~lLL----LDEPts~LD~~~r~~l~~~l~~~~~~~g~------tvi~vT 196 (359)
T 3fvq_A 143 QQQRAALARALAPDPELIL----LDEPFSALDEQLRRQIREDMIAALRANGK------SAVFVS 196 (359)
T ss_dssp HHHHHHHHHHHTTCCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHTTC------EEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEE----EeCCcccCCHHHHHHHHHHHHHHHHhCCC------EEEEEe
Confidence 34445556554 4565655 68877777776677777777777666553 455554
No 408
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.41 E-value=0.18 Score=47.11 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=24.2
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
.+..+|+|+|.+||||||+...|....|.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~ 42 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGF 42 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 44568999999999999999998766663
No 409
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.40 E-value=0.17 Score=46.48 Aligned_cols=25 Identities=32% Similarity=0.423 Sum_probs=22.2
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCC
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+|.++|.|||||+|+...|....|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 6889999999999999999777665
No 410
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.32 E-value=0.18 Score=45.24 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHhHHHHHh
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
.|++.|.+||||||++..|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999986543
No 411
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.30 E-value=0.12 Score=54.50 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
..+++|+|++|||||||+++|+.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999853
No 412
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.28 E-value=0.18 Score=46.75 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.4
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCC
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
.|++.|.+||||||+...|....|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~ 26 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL 26 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999998665553
No 413
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.22 E-value=0.17 Score=48.86 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=23.3
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
.+...|+|.|.+||||||+...|. ..|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~ 100 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGA 100 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCC
Confidence 456789999999999999999886 4453
No 414
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.21 E-value=0.14 Score=51.25 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=28.8
Q ss_pred HHHHHHHHHc-CCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhcc
Q 010318 209 REHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 257 (513)
Q Consensus 209 ~e~l~~~~~~-~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g 257 (513)
+.-+.+++++ .-|++++ +|.|....+.....++.+.+..+.++.|
T Consensus 151 ~QRvalArAL~~~P~lLL----LDEP~s~LD~~~r~~l~~~l~~l~~~~g 196 (355)
T 1z47_A 151 QQRVALARALAPRPQVLL----FDEPFAAIDTQIRRELRTFVRQVHDEMG 196 (355)
T ss_dssp HHHHHHHHHHTTCCSEEE----EESTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEE----EeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 3444555554 4565655 7888777777777777777776665544
No 415
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.18 E-value=0.19 Score=46.79 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=23.6
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
+..+|+++|.+||||||+...|....+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4468999999999999999999766654
No 416
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.14 E-value=0.14 Score=51.29 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=28.9
Q ss_pred HHHHHHHHHc-CCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhcc
Q 010318 209 REHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 257 (513)
Q Consensus 209 ~e~l~~~~~~-~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g 257 (513)
+.-+.+++++ .-|++++ +|.+....+......+.+.+..+.++.|
T Consensus 139 ~QRvalArAL~~~P~lLL----LDEP~s~LD~~~r~~l~~~l~~l~~~~g 184 (359)
T 2yyz_A 139 QQRVALARALVKQPKVLL----FDEPLSNLDANLRMIMRAEIKHLQQELG 184 (359)
T ss_dssp HHHHHHHHHHTTCCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCEEE----EECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 4444555554 4565655 7888777777777777777776665544
No 417
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.14 E-value=0.16 Score=52.05 Aligned_cols=26 Identities=31% Similarity=0.123 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
+.-.++|+|+.|||||||++.|+...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 44579999999999999999996543
No 418
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.95 E-value=0.17 Score=48.07 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.2
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
..+|+++|.+||||||+...|....|.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457999999999999999999766664
No 419
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.94 E-value=0.15 Score=51.16 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=28.4
Q ss_pred HHHHHHHHHc-CCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhcc
Q 010318 209 REHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 257 (513)
Q Consensus 209 ~e~l~~~~~~-~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g 257 (513)
+.-+.+++++ .-|++++ +|.+....+......+.+.+..+.++.|
T Consensus 139 ~QRvalArAL~~~P~lLL----LDEP~s~LD~~~r~~l~~~l~~l~~~~g 184 (362)
T 2it1_A 139 QQRVAIARALVKEPEVLL----LDEPLSNLDALLRLEVRAELKRLQKELG 184 (362)
T ss_dssp HHHHHHHHHHTTCCSEEE----EESGGGGSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEE----EECccccCCHHHHHHHHHHHHHHHHhCC
Confidence 4444555554 4565655 6887777777777777777776655544
No 420
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.83 E-value=0.16 Score=51.29 Aligned_cols=45 Identities=18% Similarity=0.358 Sum_probs=28.3
Q ss_pred HHHHHHHHHc-CCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhcc
Q 010318 209 REHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 257 (513)
Q Consensus 209 ~e~l~~~~~~-~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g 257 (513)
+.-+.+++++ .-|++++ +|.+....+.....++.+.+..+.++.|
T Consensus 145 ~QRvalArAL~~~P~lLL----LDEP~s~LD~~~r~~l~~~l~~l~~~~g 190 (372)
T 1g29_1 145 RQRVALGRAIVRKPQVFL----MDEPLSNLDAKLRVRMRAELKKLQRQLG 190 (372)
T ss_dssp HHHHHHHHHHHTCCSEEE----EECTTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCEEE----ECCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 3334444443 4465665 7888777777777777777777665544
No 421
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.80 E-value=0.18 Score=48.49 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHhHHHHHhC
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
.++++|++|+|||||+++|....+
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHcC
Confidence 399999999999999999966544
No 422
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.78 E-value=0.16 Score=51.33 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=32.6
Q ss_pred hHHHHHHHHHc-CCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhccCcccCCeeEEEee
Q 010318 208 TREHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASGYNVKKDVQFLPIS 270 (513)
Q Consensus 208 t~e~l~~~~~~-~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiS 270 (513)
-+.-+.+++++ .-|++++ +|.|....+.....++.+.+..+.++.|. .+|.+|
T Consensus 138 qrQRVaiArAL~~~P~lLL----LDEPts~LD~~~~~~l~~~l~~l~~~~g~------tii~vT 191 (381)
T 3rlf_A 138 QRQRVAIGRTLVAEPSVFL----LDEPLSNLDAALRVQMRIEISRLHKRLGR------TMIYVT 191 (381)
T ss_dssp HHHHHHHHHHHHHCCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHHCC------EEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEE----EECCCcCCCHHHHHHHHHHHHHHHHhCCC------EEEEEE
Confidence 34444455543 3355655 79887777777777777777776666553 455554
No 423
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.72 E-value=0.16 Score=51.17 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=30.1
Q ss_pred cchHHHHHHHHHc-CCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhcc
Q 010318 206 GQTREHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 257 (513)
Q Consensus 206 ~qt~e~l~~~~~~-~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g 257 (513)
+|-+ -+.+++++ .-|++++ +|.+....+.....++.+.+..+.++.|
T Consensus 145 Gq~Q-RvalArAL~~~P~lLL----LDEP~s~LD~~~r~~l~~~l~~l~~~~g 192 (372)
T 1v43_A 145 GQRQ-RVAVARAIVVEPDVLL----MDEPLSNLDAKLRVAMRAEIKKLQQKLK 192 (372)
T ss_dssp SCHH-HHHHHHHHTTCCSEEE----EESTTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-HHHHHHHHhcCCCEEE----EcCCCccCCHHHHHHHHHHHHHHHHhCC
Confidence 4444 44455544 4565665 7988777777777777777777666554
No 424
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.66 E-value=0.89 Score=45.05 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=20.1
Q ss_pred eeEEEEEecCCCChHHHHhHHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
--.+.|.|.+++|||||+-+|...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999888543
No 425
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=89.63 E-value=0.69 Score=44.52 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=43.1
Q ss_pred CCeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHH------cCCCeEEEEEeecc
Q 010318 158 ETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKT------LGVTKLLLVVNKMD 231 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~------~~ip~~ivviNK~D 231 (513)
..+.+.|||||+..... ....+..+|.+|+++.+..... ......+..+.. .+++.+-+++|++|
T Consensus 153 ~~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~ 223 (298)
T 2oze_A 153 SDYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEEEST-------NNIQNYISYLIDLQEQFNPGLDMIGFVPYLVD 223 (298)
T ss_dssp GGCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGGCCH-------HHHHHHHHHHHHHHHHHCTTCEEEEEEEEESC
T ss_pred cCCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcHHHH-------HHHHHHHHHHHHHHHHhCCCCeEEEEEEEEEC
Confidence 34779999999976553 2334557999999999876432 133333444433 25663448899999
Q ss_pred C
Q 010318 232 D 232 (513)
Q Consensus 232 ~ 232 (513)
.
T Consensus 224 ~ 224 (298)
T 2oze_A 224 T 224 (298)
T ss_dssp T
T ss_pred C
Confidence 6
No 426
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=89.54 E-value=0.28 Score=46.06 Aligned_cols=65 Identities=11% Similarity=0.147 Sum_probs=43.9
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCC--------CeEEEEEeec
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGV--------TKLLLVVNKM 230 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~i--------p~~ivviNK~ 230 (513)
.+.+.|||||+.... .....+..+|.+|+|+.+..... ..+...+..+...+. ..+-+++|++
T Consensus 113 ~yD~viiD~p~~~~~--~~~~~l~~ad~vi~v~~~~~~s~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~ 183 (260)
T 3q9l_A 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNPEVSSV-------RDSDRILGILASKSRRAENGEEPIKEHLLLTRY 183 (260)
T ss_dssp TCSEEEEECCSSSSH--HHHHHHHTCSEEEEEECSSHHHH-------HHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEE
T ss_pred CCCEEEEcCCCCCCH--HHHHHHHhCCEEEEEecCChhHH-------HHHHHHHHHHHHhccccccccCCcceEEEEecC
Confidence 688999999985543 45556778999999999875321 133444444444331 3477899999
Q ss_pred cC
Q 010318 231 DD 232 (513)
Q Consensus 231 D~ 232 (513)
|.
T Consensus 184 ~~ 185 (260)
T 3q9l_A 184 NP 185 (260)
T ss_dssp CH
T ss_pred Cc
Confidence 95
No 427
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.53 E-value=0.2 Score=45.97 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++++|++|+|||||+..|..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999998853
No 428
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=89.40 E-value=0.56 Score=45.95 Aligned_cols=24 Identities=13% Similarity=-0.040 Sum_probs=19.7
Q ss_pred eeEEEEEecCCCChHHHHhHHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
--.+.|.|.|++|||||+-.+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 346889999999999999887543
No 429
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.31 E-value=0.21 Score=45.64 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.1
Q ss_pred cceeEEEEEecCCCChHHHHhHHHH
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
.+...|+++|.+||||||+...|..
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999998843
No 430
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=89.30 E-value=0.38 Score=46.30 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=27.8
Q ss_pred CeEEEEEeCCCCcchHHHHHHhhhhcCEEEEEEECCC
Q 010318 159 TTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK 195 (513)
Q Consensus 159 ~~~i~liDtPGh~~f~~~~~~~~~~~D~~ilVVda~~ 195 (513)
.+.+.|||||+.. ...+...+..+|.+|+|+.+..
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~ 137 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSF 137 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSH
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCc
Confidence 4679999999975 3445566789999999998764
No 431
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.09 E-value=0.2 Score=43.41 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHhHHHHHh
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
..+|+|+.|+|||||+.+|.+..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999996543
No 432
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.97 E-value=1.3 Score=43.91 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=38.0
Q ss_pred eEEEEEeCCCCc-chHHHHHHhh-hhc-CEEEEEEECCCCcccccc--cCCcc----hHHHHHHHHHcCCCeEEEEEeec
Q 010318 160 TRFTILDAPGHK-SYVPNMISGA-SQA-DIGVLVISARKGEFETGF--EKGGQ----TREHVMLAKTLGVTKLLLVVNKM 230 (513)
Q Consensus 160 ~~i~liDtPGh~-~f~~~~~~~~-~~~-D~~ilVVda~~g~~e~~~--~~~~q----t~e~l~~~~~~~ip~~ivviNK~ 230 (513)
..+.|.|+|+.. .-+...++.+ +.- +.-++|||.-.-+...+. ....+ ++..-.+++.+++| + ++++.+
T Consensus 128 ~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vp-V-i~lsQl 205 (338)
T 4a1f_A 128 KKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIP-I-IALVQL 205 (338)
T ss_dssp SCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSC-E-EEEEEC
T ss_pred CCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCe-E-EEEEec
Confidence 457888999842 2233333333 233 789999995443221000 00112 23334567778999 4 677766
Q ss_pred cC
Q 010318 231 DD 232 (513)
Q Consensus 231 D~ 232 (513)
-+
T Consensus 206 ~R 207 (338)
T 4a1f_A 206 NR 207 (338)
T ss_dssp CG
T ss_pred Cc
Confidence 55
No 433
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.90 E-value=0.21 Score=50.71 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++++|+.|||||||++.|.+
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 4689999999999999998853
No 434
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.87 E-value=0.19 Score=52.18 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
+-..++|+|+.|||||||++.|.+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 446799999999999999998854
No 435
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.85 E-value=0.3 Score=45.56 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=22.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
+...|++.|.+||||||++..|....+
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 557899999999999999999965543
No 436
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=88.74 E-value=0.14 Score=51.17 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=29.9
Q ss_pred hHHHHHHHHHc-CCCeEEEEEeeccCCCCCchHHHHHHHHhhhHhhhhhcc
Q 010318 208 TREHVMLAKTL-GVTKLLLVVNKMDDHTVNWSKERYDEIESKMTPFLKASG 257 (513)
Q Consensus 208 t~e~l~~~~~~-~ip~~ivviNK~D~~~~~~~~~~~~~i~~~l~~~l~~~g 257 (513)
-+.-+.+++++ .-|++++ +|.+....+......+.+.+..+.++.|
T Consensus 132 q~QRvalAraL~~~P~lLL----LDEP~s~LD~~~~~~l~~~l~~l~~~~g 178 (348)
T 3d31_A 132 EQQRVALARALVTNPKILL----LDEPLSALDPRTQENAREMLSVLHKKNK 178 (348)
T ss_dssp HHHHHHHHHHTTSCCSEEE----EESSSTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCEEE----EECccccCCHHHHHHHHHHHHHHHHhcC
Confidence 34455566665 4465655 7888777777777777777776655544
No 437
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.59 E-value=0.28 Score=44.30 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.9
Q ss_pred EEEEEecCCCChHHHHhHHHHHhCC
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
.|+|.|.+||||||+...|....|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~ 28 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 7999999999999999998766553
No 438
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.58 E-value=0.26 Score=47.68 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=19.4
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++|+|++|+|||||+..|..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999998854
No 439
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.41 E-value=0.17 Score=49.09 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=19.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
+.+.|+|.|..||||||+.+.|....|
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456799999999999999999876444
No 440
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.39 E-value=0.26 Score=46.38 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.0
Q ss_pred EEEEEecCCCChHHHHhHHHHHh
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
.+.++|++|+|||||+.+|....
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999986543
No 441
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.36 E-value=1.4 Score=43.17 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.1
Q ss_pred eeEEEEEecCCCChHHHHhHHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
--.+.|.|++++|||||+-+|...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHH
Confidence 347899999999999999888543
No 442
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.14 E-value=0.79 Score=45.97 Aligned_cols=22 Identities=23% Similarity=0.152 Sum_probs=18.4
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
..+.|.|.+++|||||+-+|..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHH
Confidence 4677899999999999987743
No 443
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.08 E-value=0.28 Score=48.49 Aligned_cols=27 Identities=22% Similarity=0.078 Sum_probs=22.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
+...++++|++|+|||||+..|....+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 345689999999999999999976553
No 444
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=87.95 E-value=0.29 Score=48.78 Aligned_cols=26 Identities=23% Similarity=0.073 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
+--+++|+|+.|+|||||++.|.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33579999999999999999986553
No 445
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.89 E-value=0.32 Score=49.02 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=22.2
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
.+...++++|++|+|||||+..|....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344689999999999999999986543
No 446
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=87.87 E-value=0.14 Score=51.34 Aligned_cols=22 Identities=27% Similarity=0.122 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++++|+.|||||||++.|.+
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4689999999999999998843
No 447
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=87.79 E-value=0.34 Score=45.24 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=22.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhCC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSGQ 108 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g~ 108 (513)
.+.+++++|.+||||||+...|....|.
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~ 34 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGI 34 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCC
Confidence 4578999999999999999998766553
No 448
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.66 E-value=0.28 Score=51.10 Aligned_cols=24 Identities=33% Similarity=0.249 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHhHHHHHh
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
-.++|+|+.|||||||++.|.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 678999999999999999986543
No 449
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.61 E-value=0.31 Score=44.39 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=19.5
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++++|++|+|||||+..|..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998854
No 450
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=87.60 E-value=1.2 Score=47.64 Aligned_cols=157 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred CcceeEEEEEecCCCChHHHHhHHHHHhCCcchhHHHHHHHHHhhcCccchhhhhhccCchhhhhcCcEEEeeeEE----
Q 010318 79 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERIKGKTVEVGRAH---- 154 (513)
Q Consensus 79 ~~~~~~v~ivG~v~~GKSTLi~~Ll~~~g~i~~~~~~~~~~~~~~~g~~s~~~~~~~d~~~~e~~~giTi~~~~~~---- 154 (513)
......+.+.|..|+||||+.-.|...... .|..+-+....
T Consensus 5 ~~~~~i~~~sgkGGvGKTT~a~~lA~~lA~-----------------------------------~G~rVLlvd~D~~~~ 49 (589)
T 1ihu_A 5 QNIPPYLFFTGKGGVGKTSISCATAIRLAE-----------------------------------QGKRVLLVSTDPASN 49 (589)
T ss_dssp SSCCSEEEEECSTTSSHHHHHHHHHHHHHH-----------------------------------TTCCEEEEECCTTCC
T ss_pred CCCCEEEEEeCCCcCHHHHHHHHHHHHHHH-----------------------------------CCCcEEEEECCCCcC
Q ss_pred --------------------------------------------------------------------------------
Q 010318 155 -------------------------------------------------------------------------------- 154 (513)
Q Consensus 155 -------------------------------------------------------------------------------- 154 (513)
T Consensus 50 l~~~l~~~~~~~~~~v~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~ 129 (589)
T 1ihu_A 50 VGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTD 129 (589)
T ss_dssp HHHHTTSCCCSSCEECTTSTTEEEEECCHHHHHHHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCcccCCCceeccchhhhhccCCHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhc
Q ss_pred -EEeCCeEEEEEeCCCCcchHHHHH----------------------------------HhhhhcC----EEEEEEECCC
Q 010318 155 -FETETTRFTILDAPGHKSYVPNMI----------------------------------SGASQAD----IGVLVISARK 195 (513)
Q Consensus 155 -~~~~~~~i~liDtPGh~~f~~~~~----------------------------------~~~~~~D----~~ilVVda~~ 195 (513)
.....+.+.+||||+...-++... .....+| .+++|+.+..
T Consensus 130 ~~l~~~yD~VIiDt~P~~~~lrll~lP~~~~~~l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~ 209 (589)
T 1ihu_A 130 ASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQK 209 (589)
T ss_dssp TTHHHHCSEEEESSCCCHHHHHHHHCGGGGTCCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCH
T ss_pred hhhcccCCEEEECCCCchhHHHHHHhHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Q ss_pred CcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccCCCC----CchHHHHHHHHhhhHhhhhhccCcccCCeeEEEeec
Q 010318 196 GEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDDHTV----NWSKERYDEIESKMTPFLKASGYNVKKDVQFLPISG 271 (513)
Q Consensus 196 g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~~~~----~~~~~~~~~i~~~l~~~l~~~g~~~~~~~~iipiSa 271 (513)
... ..+.+.+..+...|++..-+++|++..... .|...++....+.+..+-..++-. .+..+|.-+
T Consensus 210 ~~~-------~~~~~~~~~L~~~g~~~~gvVlN~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~i~~vPl~~ 279 (589)
T 1ihu_A 210 STL-------QEVARTHLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANLPADLAGL---PTDTLFLQP 279 (589)
T ss_dssp HHH-------HHHHHHHHHHHHHTCCCEEEEEEEECCGGGGSSCHHHHHHHHHHHHHHHTCCHHHHTS---CEEEEECCS
T ss_pred cHH-------HHHHHHHHHHHhCCCCCCEEEEcCCcCccccccCHHHHHHHHHHHHHHHHHHHhccCC---CEEEecCCC
Q ss_pred ccccccccc
Q 010318 272 LMGLNMKTR 280 (513)
Q Consensus 272 ~~g~gi~~l 280 (513)
..-.|+..+
T Consensus 280 ~e~~g~~~l 288 (589)
T 1ihu_A 280 VNMVGVSAL 288 (589)
T ss_dssp SCCCSHHHH
T ss_pred CCCCCHHHH
No 451
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.59 E-value=0.37 Score=42.30 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
....+.+.|.+|+|||||+.++..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998843
No 452
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=87.49 E-value=0.3 Score=47.19 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
..|.++|.+||||||+...|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999864
No 453
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.46 E-value=0.31 Score=44.58 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.3
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhC
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
...|++.|.+||||||+...|....|
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46799999999999999998866555
No 454
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=87.31 E-value=1.2 Score=44.39 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.1
Q ss_pred eeEEEEEecCCCChHHHHhHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll 103 (513)
--.+.|.|++++|||||+-++.
T Consensus 61 G~i~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3578899999999999998874
No 455
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.21 E-value=0.33 Score=44.96 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=19.9
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
--.++++|++|+|||||+..|..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35789999999999999998854
No 456
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=87.19 E-value=0.33 Score=46.40 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHhHHHHHh
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
.++++|++|+|||||+.+|....
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 49999999999999999986544
No 457
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=86.97 E-value=0.25 Score=46.94 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=22.3
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
++...|+|.|..||||||+++.|....
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 456789999999999999999885543
No 458
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.85 E-value=1.4 Score=43.09 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=21.2
Q ss_pred cceeEEEEEecCCCChHHHHhHHHH
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
.+...|.+.|++|+|||+|+.++..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHH
Confidence 3457899999999999999998843
No 459
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.78 E-value=0.44 Score=44.84 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
...+.+.|++|+|||||+.+|...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999998543
No 460
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=86.75 E-value=0.29 Score=52.45 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
--.++++|+.|||||||++.|.+
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 34799999999999999998854
No 461
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.65 E-value=0.31 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=20.1
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
--.++++|+.|||||||++.|.+
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999998854
No 462
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=86.50 E-value=0.31 Score=52.20 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
+--.++++|+.|||||||++.|.+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 334799999999999999998854
No 463
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.16 E-value=0.41 Score=49.31 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=21.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
+--+++|+|+.|+|||||++.|.+.
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3357999999999999999998654
No 464
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=86.16 E-value=0.38 Score=48.22 Aligned_cols=22 Identities=36% Similarity=0.267 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHhHHHHH
Q 010318 84 NVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
..+|+|+.|||||||++++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4669999999999999998644
No 465
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.04 E-value=0.43 Score=44.57 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=21.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHh
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
...|++.|..||||||+++.|....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999986554
No 466
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=85.94 E-value=0.3 Score=52.51 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=20.5
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
+--.++++|+.|||||||++.|.+
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 345799999999999999998854
No 467
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=85.93 E-value=0.29 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=20.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
+--.++++|+.|||||||++.|.+
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 334799999999999999998843
No 468
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=85.73 E-value=0.37 Score=51.06 Aligned_cols=22 Identities=18% Similarity=0.083 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++++|+.|||||||++.|.+
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999854
No 469
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.71 E-value=0.45 Score=45.55 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=19.8
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
--.++|+|++|+|||||+..|..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999988853
No 470
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=85.66 E-value=0.26 Score=52.79 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=20.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
+--.++++|+.|||||||++.|.+
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 345799999999999999998853
No 471
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.56 E-value=3.1 Score=43.62 Aligned_cols=26 Identities=15% Similarity=0.101 Sum_probs=21.7
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
....+.+.|++|+|||||+.+|....
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999885443
No 472
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=85.42 E-value=0.39 Score=51.59 Aligned_cols=24 Identities=21% Similarity=0.055 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCChHHHHhHHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
--.++++|+.|+|||||++.|.+.
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 347999999999999999988643
No 473
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.31 E-value=0.57 Score=46.09 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=21.3
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhC
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
..|+|+|.+++|||||...|....+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999865543
No 474
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=85.28 E-value=0.54 Score=42.32 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
..+.+.|.+|+|||||+.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999988843
No 475
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.12 E-value=0.42 Score=50.65 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=19.5
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++|+|+.|||||||++.|.+
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~G 334 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAG 334 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998854
No 476
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.06 E-value=0.55 Score=43.07 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=20.9
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
....+.+.|.+|+|||||+.++..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998843
No 477
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=85.02 E-value=0.44 Score=43.45 Aligned_cols=25 Identities=28% Similarity=0.129 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhC
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
...+|+|+.|+|||||+++|.+..+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4568999999999999999976554
No 478
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=84.79 E-value=1.5 Score=43.64 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.0
Q ss_pred cceeEEEEEecCCCChHHHHhHHH
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll 103 (513)
.....|.+.|.+|+|||+|+.++.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999884
No 479
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=84.67 E-value=0.31 Score=52.22 Aligned_cols=24 Identities=29% Similarity=0.199 Sum_probs=20.3
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
+--.++++|+.|||||||++.|.+
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 335799999999999999998854
No 480
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=84.40 E-value=0.49 Score=41.38 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
....+.+.|.+|+|||||+..+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999988843
No 481
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=84.34 E-value=0.46 Score=50.27 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=19.3
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++|+|+.|||||||++.|.+
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999998843
No 482
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=84.27 E-value=0.48 Score=50.97 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=19.5
Q ss_pred eEEEEEecCCCChHHHHhHHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
-.++|+|+.|+|||||++.|.+
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999998854
No 483
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=84.27 E-value=0.47 Score=51.04 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=20.0
Q ss_pred eeEEEEEecCCCChHHHHhHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
--.++++|+.|||||||++.|.+
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 34789999999999999998854
No 484
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=84.14 E-value=0.65 Score=46.01 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHhHHHHHhC
Q 010318 83 LNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
..|+|+|.++||||||...|....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5799999999999999999866544
No 485
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=84.14 E-value=2 Score=39.15 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=40.8
Q ss_pred CCeEEEEEeCCCCcch-----HHHHHHhhhhcCEEEEEEECCCCcccccccCCcchHHHHHHHHHcCCCeEEEEEeeccC
Q 010318 158 ETTRFTILDAPGHKSY-----VPNMISGASQADIGVLVISARKGEFETGFEKGGQTREHVMLAKTLGVTKLLLVVNKMDD 232 (513)
Q Consensus 158 ~~~~i~liDtPGh~~f-----~~~~~~~~~~~D~~ilVVda~~g~~e~~~~~~~qt~e~l~~~~~~~ip~~ivviNK~D~ 232 (513)
..+.+.|||+||.-.. ...........+.+|+|+.+..+.. .++...+..++..+++-+=+++|++|.
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~-------~~~~~~i~~l~~~~~~i~gvvlN~~~~ 179 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCI-------NHAMLTAQVIQHAGLTLAGWVANDVTP 179 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHH-------HHHHHHHHHHHHTTCCEEEEEEECCSS
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcH-------HHHHHHHHHHHHCCCcEEEEEEeCCCC
Confidence 4678999999975421 1111111112235788888754321 245556666667788734478999996
No 486
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=83.83 E-value=1 Score=35.15 Aligned_cols=55 Identities=16% Similarity=0.259 Sum_probs=41.3
Q ss_pred EeeeecCCCEEE-EecCC--cEEEEEEEEE-CCeeeccc-CCCCeEEEEeccCCcccceeeeEE
Q 010318 332 ESGSVREGDSLL-VMPNK--AQVKVLAIYC-DDNRVRHA-GPGENLRIRLSGIEEEDILSGFVL 390 (513)
Q Consensus 332 ~sG~l~~gd~v~-~~p~~--~~~~V~~i~~-~~~~v~~a-~aG~~v~i~l~~~~~~~i~~G~vl 390 (513)
....+.+||.|. +.|.+ ...+|..|.. .+++++.| .||+.|.|.+.. .+..|++|
T Consensus 26 ~rN~f~~GD~iEi~~P~g~~~~~~v~~m~d~~G~~i~~A~~~~~~v~i~~~~----~~~~~dil 85 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPEIENFTQVIEKIWDEDGNELDAARHPLQIVKFKVKR----PLFPYNMM 85 (89)
T ss_dssp ESSCBCTTCEEEEESTTSCCEEEECCCEEETTSCEESCBCSTTCEEEEECSS----CCCTTCEE
T ss_pred EcCCcCCCCEEEEEcCCCCcEEEEeHHeEcCCCCEeeEcCCCCeEEEEECCC----CCCCCCEE
Confidence 478899999997 55665 4567888874 47889998 999999987752 34556655
No 487
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=83.83 E-value=0.66 Score=45.41 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=21.6
Q ss_pred eeEEEEEecCCCChHHHHhHHHHHhC
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
...|+|+|++++|||||...|....+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999965443
No 488
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=83.72 E-value=0.67 Score=42.89 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.2
Q ss_pred eEEEEEecCCCChHHHHhHHH
Q 010318 83 LNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 83 ~~v~ivG~v~~GKSTLi~~Ll 103 (513)
-.++++|++|+|||||+.+++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999987774
No 489
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=83.59 E-value=0.68 Score=46.13 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=21.6
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
...+|+++|.+|+|||||...|....
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45789999999999999998885443
No 490
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=83.23 E-value=0.55 Score=50.45 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=18.8
Q ss_pred EEEEEecCCCChHHHHhHHHH
Q 010318 84 NVVFIGHVDAGKSTTGGQILF 104 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~ 104 (513)
.++|+|+.|||||||++.|.+
T Consensus 380 iv~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999998843
No 491
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.10 E-value=0.86 Score=44.04 Aligned_cols=28 Identities=25% Similarity=0.154 Sum_probs=22.6
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHhC
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
+.+..+.+.|+||+|||+|+.++....|
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4456778889999999999999965554
No 492
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=83.10 E-value=0.85 Score=44.54 Aligned_cols=27 Identities=11% Similarity=0.162 Sum_probs=22.2
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHhC
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
.+..|+|+|++++|||||...|....+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 346789999999999999999965544
No 493
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=82.86 E-value=2 Score=43.08 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=20.4
Q ss_pred ceeEEEEEecCCCChHHHHhHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll 103 (513)
+...|.+.|.+|+|||+|+.++.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999884
No 494
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.80 E-value=1.8 Score=44.37 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=22.7
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
.++.-|.+.|+||+|||+|+.++....
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456789999999999999999995443
No 495
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=82.51 E-value=0.76 Score=45.74 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCChHHHHhHHHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
--.+.|+|++|+|||||+..|...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999988544
No 496
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=82.46 E-value=1.1 Score=41.65 Aligned_cols=22 Identities=23% Similarity=0.074 Sum_probs=17.5
Q ss_pred eeEEEEEecCCCChHHHHhHHH
Q 010318 82 HLNVVFIGHVDAGKSTTGGQIL 103 (513)
Q Consensus 82 ~~~v~ivG~v~~GKSTLi~~Ll 103 (513)
-..+.+.|.+|+||||++-.++
T Consensus 12 G~i~litG~mGsGKTT~ll~~~ 33 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRL 33 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHH
Confidence 3567889999999999875553
No 497
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=82.45 E-value=0.87 Score=42.61 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHH
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFL 105 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~ 105 (513)
....+.+.|.+|+|||+|+.++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999988543
No 498
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=82.40 E-value=0.62 Score=45.68 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.0
Q ss_pred EEEEEecCCCChHHHHhHHHHHhC
Q 010318 84 NVVFIGHVDAGKSTTGGQILFLSG 107 (513)
Q Consensus 84 ~v~ivG~v~~GKSTLi~~Ll~~~g 107 (513)
..+|+|..|+|||||+++|.+..|
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~llg 49 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWVFG 49 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred cEEEECCCCCcHHHHHHHHHHHhC
Confidence 678999999999999999976554
No 499
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.40 E-value=0.87 Score=43.36 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=22.2
Q ss_pred cceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 80 KRHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 80 ~~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
.....+.+.|++|+|||||+.++....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345679999999999999999985443
No 500
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=82.37 E-value=0.84 Score=43.80 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=21.8
Q ss_pred ceeEEEEEecCCCChHHHHhHHHHHh
Q 010318 81 RHLNVVFIGHVDAGKSTTGGQILFLS 106 (513)
Q Consensus 81 ~~~~v~ivG~v~~GKSTLi~~Ll~~~ 106 (513)
+...+.+.|++|+|||||+.++....
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45789999999999999999985443
Done!