BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010320
(513 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225436849|ref|XP_002270788.1| PREDICTED: pentatricopeptide repeat-containing protein At2g30780
[Vitis vinifera]
gi|296086664|emb|CBI32299.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/517 (61%), Positives = 387/517 (74%), Gaps = 27/517 (5%)
Query: 1 MKRVWKLSDAAQTELLLQRLQRHSSKPKTLPP----LSVFTLTKSPNHSFTRDLCAPATH 56
MKRVWK + L+ +KPK L P L+ T T++P L P T
Sbjct: 1 MKRVWK------SGLI-------CTKPKILTPDFQNLARVTHTRTP-------LQGPYTL 40
Query: 57 TVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRR 116
T +++ L S+ + D R R++L VS LRDEL+ + DD D V RVL+EKG LFR
Sbjct: 41 T---SMIGLFSDKHSELDLRAREELRGKVSQLRDELVPSGDDSDMVVRVLEEKGESLFRS 97
Query: 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAA 176
+SNG AFVEL+KQL S P LAL+V NWRR Q Y PMT EEY KGI AGR NVDLA
Sbjct: 98 YSNGSAFVELLKQLSSWPYLALQVFNWRRNQTDYSIPMTSEEYAKGISVAGRTKNVDLAV 157
Query: 177 DLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
+LF EAANK +KT TYNAL+GAYM NG ++KCQ+LFRDLK+EA+ SP+IVTYN LISVF
Sbjct: 158 ELFTEAANKQIKTTSTYNALMGAYMCNGHAEKCQALFRDLKREASCSPTIVTYNILISVF 217
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
GRL+LVDHMEA F+EIK+ LSPN+ TYN +IAGY+TAWMW ++E+ ++ MK + PD
Sbjct: 218 GRLMLVDHMEATFREIKELELSPNISTYNNIIAGYVTAWMWNRMEDTFRTMKEDNIQPDI 277
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
NT+LL+LRGYAHSGNL +ME+ YEL+K HV+ KE PLIRAMICAY K S+TDR++KI AL
Sbjct: 278 NTHLLMLRGYAHSGNLQKMEETYELIKGHVNDKEIPLIRAMICAYCKSSITDRVEKIGAL 337
Query: 357 MRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC 416
M+LIPE EYRPWLNV+LIRVYA+ED +EEME SIN+AFEHKTSV T+R+MR I+++YFRC
Sbjct: 338 MKLIPENEYRPWLNVMLIRVYAQEDWVEEMENSINEAFEHKTSVKTMRVMRSIIATYFRC 397
Query: 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476
NAVD+LANFVKRAE GW +CRSLYH KMVMYASQ+R+EEMESVL EME+ C+KKTF
Sbjct: 398 NAVDRLANFVKRAECGGWHICRSLYHCKMVMYASQKRLEEMESVLNEMESSNFCCTKKTF 457
Query: 477 WIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
WI+Y AY+ QR KV QV GLMCK+GY +P + S
Sbjct: 458 WILYKAYSMWDQRHKVEQVKGLMCKHGYGIPSDVLLS 494
>gi|255567580|ref|XP_002524769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535953|gb|EEF37612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 509
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 311/515 (60%), Positives = 394/515 (76%), Gaps = 8/515 (1%)
Query: 1 MKRVWKLSD-AAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVF 59
MKRV K+SD A Q ELL L + S +TL P + TLTKSP + R + + F
Sbjct: 1 MKRVSKISDLAVQAELL--SLNKFPSITQTLTPY-ILTLTKSPIYKLARAHTSEPV-SFF 56
Query: 60 PTLVRLLSETLTYP-DARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHS 118
P ++ L S +P D + +DL++TVS LRDEL+ + +D DK FRVL+E+G LFR S
Sbjct: 57 PNIISLFSRR--FPVDNKAIEDLSKTVSHLRDELVQHAEDSDKFFRVLEEQGDSLFRMRS 114
Query: 119 NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADL 178
+ A VEL++QL S P LA+EV NWRR+Q + TPMT EEY KGI AGR NVDLA ++
Sbjct: 115 DRSALVELLRQLVSLPHLAVEVFNWRRKQTEWSTPMTHEEYAKGITIAGRAKNVDLAIEI 174
Query: 179 FAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238
FAEA +K K YNAL+GAYMYNG DKCQSLF D KKEANI PS+VTYN LISVFGR
Sbjct: 175 FAEACSKRRKKTCIYNALMGAYMYNGHYDKCQSLFLDFKKEANIGPSVVTYNILISVFGR 234
Query: 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298
+LVDHMEA F+E+ + N+SPNV TYN LIAGY+TAWMW +E+++Q+MK GP+ P +T
Sbjct: 235 SMLVDHMEATFRELMNLNISPNVSTYNNLIAGYVTAWMWDDMEQVFQLMKEGPIYPHLDT 294
Query: 299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
YLL+LRGYAHSGN+ +ME++Y+LV+ HV+ E PLIR MICAY K S+TDRIKKIE L+R
Sbjct: 295 YLLMLRGYAHSGNIEKMEEMYKLVQDHVNVNEVPLIRTMICAYCKSSITDRIKKIEELLR 354
Query: 359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA 418
LIPE+EYRPWLNVLLI+VYA+++ LE ME I++AF+H+T++TTV IMR I++SYFRCNA
Sbjct: 355 LIPEEEYRPWLNVLLIKVYAQQNLLEAMENKIDEAFKHETTITTVGIMRTIIASYFRCNA 414
Query: 419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWI 478
VD+LA+FVKRAE +GWR+CRSLYH KMVMYAS++R++EMESVL +MEN+ + +KKTF I
Sbjct: 415 VDRLADFVKRAECSGWRICRSLYHCKMVMYASEKRLDEMESVLNDMENFNLGRTKKTFVI 474
Query: 479 MYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
+Y AY CG++ KV QVLGLM K+GY+VP A PS
Sbjct: 475 LYKAYLMCGKKYKVEQVLGLMYKHGYEVPEGASPS 509
>gi|449460469|ref|XP_004147968.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g30780-like [Cucumis sativus]
gi|449494249|ref|XP_004159492.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g30780-like [Cucumis sativus]
Length = 514
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 263/428 (61%), Positives = 336/428 (78%), Gaps = 1/428 (0%)
Query: 81 LTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEV 140
+ + V + EL+ N +D +K+ ++L++ L +H++G AFVEL+KQLGS+P LALEV
Sbjct: 81 MERKVLEVSHELILNSEDSNKIVKILEDSKDLLLWKHTDGSAFVELLKQLGSQPNLALEV 140
Query: 141 LNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAY 200
NWRRRQ G P+T EEY KGI AG+ ++DLA LF EA+NK +K TYNAL+G +
Sbjct: 141 FNWRRRQGG-SFPLTVEEYAKGIAVAGKSKHIDLAVGLFNEASNKRVKATSTYNALMGVF 199
Query: 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN 260
M+NGL+DKC S+FRDLK++A P+IVTYN LISVFGRL+LVDHMEA +EI + NLSPN
Sbjct: 200 MFNGLADKCNSVFRDLKRDAGCVPNIVTYNILISVFGRLMLVDHMEATMREIHNLNLSPN 259
Query: 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
V TYN LIAGY+TAWMW ++E+ + MKA + P+T T+LL+LRGYAHS NL +ME+++
Sbjct: 260 VNTYNSLIAGYITAWMWKRMEQAFMKMKASSITPNTETFLLMLRGYAHSDNLEKMEEMHH 319
Query: 321 LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKE 380
+K HV+ FPLIRAMI AYS+ S+TD++ KI+AL++LIPE+EYRPWLNV LIRVYA+
Sbjct: 320 FLKDHVNKNNFPLIRAMIYAYSRSSITDKVHKIDALLKLIPEEEYRPWLNVKLIRVYAQA 379
Query: 381 DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL 440
DCLE ME SIN+AFEH TSV TV +MR I++SYFRCNAVDKL NF+ RAES+GWR+CRSL
Sbjct: 380 DCLERMENSINEAFEHGTSVYTVHVMRSIIASYFRCNAVDKLINFISRAESSGWRICRSL 439
Query: 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
YH KMVM+ASQ R+EEME VL EM+N+ +D SKKTF+I+Y AY+T G R K NQV+ MC
Sbjct: 440 YHCKMVMFASQNRLEEMECVLDEMKNFNLDWSKKTFYILYKAYSTSGCRYKANQVVCRMC 499
Query: 501 KNGYDVPV 508
K GY VPV
Sbjct: 500 KLGYGVPV 507
>gi|356503505|ref|XP_003520548.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g30780-like [Glycine max]
Length = 442
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 252/433 (58%), Positives = 328/433 (75%)
Query: 80 DLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALE 139
DL V+ L++EL+ + D +V +LD+ LFRRH NG A ++LM QL S P LAL+
Sbjct: 10 DLINKVTILKNELIRDSCDSARVQTILDDSFDTLFRRHPNGSALLKLMNQLNSNPSLALQ 69
Query: 140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199
V +WRR+++ PM EY+KGIK AGR NVDLA LF EAA K +KT GTYNAL+GA
Sbjct: 70 VFSWRRKRSNAENPMDAYEYSKGIKAAGRSGNVDLAVKLFKEAAVKGIKTTGTYNALMGA 129
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
+M+NGL D CQSLF DLK++ PSI TYN L+SV+GRL+LVDHMEA F EI+ NL+
Sbjct: 130 FMFNGLPDNCQSLFCDLKRDLTCDPSIATYNILLSVYGRLMLVDHMEATFSEIQRLNLAM 189
Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
N+ TYN+LIAGY+TAWMW +E+++QM+K V P+ T+LL+LRGYA+SGNL +ME++Y
Sbjct: 190 NICTYNHLIAGYITAWMWDDMEKVFQMLKLSSVEPNMKTHLLMLRGYANSGNLEKMEEMY 249
Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379
++ HV+ KE LIR MICAY + S DR+KKIE L++ IP+KEYRPWLNVLLI++YAK
Sbjct: 250 SFIRDHVNIKEISLIRCMICAYCRSSHADRLKKIELLLKFIPQKEYRPWLNVLLIKLYAK 309
Query: 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
ED L +ME +IN+AFEH TS+TT I+R I+++Y+RCNAV+KL NFV+RAE +GW +CRS
Sbjct: 310 EDWLAKMENAINEAFEHGTSITTKGILRRIIATYYRCNAVEKLENFVRRAEISGWSICRS 369
Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
LYH K+VMY SQ + EM +VL+EMEN K+ CSKKT WIMY AY + GQ V + LG M
Sbjct: 370 LYHCKLVMYGSQMTLLEMHNVLEEMENVKLKCSKKTLWIMYKAYMSRGQISMVLKTLGQM 429
Query: 500 CKNGYDVPVNAFP 512
K+GY+VP++AFP
Sbjct: 430 FKHGYEVPLSAFP 442
>gi|356570536|ref|XP_003553441.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g30780-like [Glycine max]
Length = 504
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/518 (51%), Positives = 352/518 (67%), Gaps = 19/518 (3%)
Query: 1 MKRVWKLS-DAAQTELLLQRLQRHS----SKPKTLPPLSVFTLTKSPNHSFTRDLCAPAT 55
M+RVW+ S DA + LL LQ H S PKT P L+ L+ N + + C+
Sbjct: 1 MRRVWRFSSDATRRAQLLLLLQSHYFHGFSNPKTTPSLAT-ALSHHRNLNSVPNACS--- 56
Query: 56 HTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFR 115
L+ L + + ++DL S L++EL+ D +V +LD+ L +
Sbjct: 57 -----DLIPLFTAKSC---SSAKEDLINKASILKNELIRESSDSARVLSILDDNSDTLIQ 108
Query: 116 RHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLA 175
RH +G + LM QL S P LAL+V +WRR+++ PM EY+KGIK AGR NVDLA
Sbjct: 109 RHPDGSVLLRLMNQLNSNPSLALQVFSWRRKRSNVENPMDAYEYSKGIKAAGRSGNVDLA 168
Query: 176 ADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
LF EAA K +KT TYNAL+GA M NGL+D CQSLF DLK++ PSI TYN L+SV
Sbjct: 169 VKLFKEAAVKGIKTTSTYNALMGACMSNGLADNCQSLFCDLKRDPTCDPSIATYNILLSV 228
Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
FGRL+LVDHMEA F+EI+ + N+ TYN++IAGY+TAWMW +E ++QM+K PV P+
Sbjct: 229 FGRLMLVDHMEATFREIQKLTFTMNICTYNHMIAGYITAWMWDDMENVFQMLKRSPVEPN 288
Query: 296 TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA 355
TY+L+LRGYA+SGNL +ME+IY + VD KE LIR MICAYS+ S DR+KKIE
Sbjct: 289 MKTYMLMLRGYANSGNLEKMEEIYSFITDRVDIKEISLIRCMICAYSRSSDADRLKKIEL 348
Query: 356 LMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR 415
L++ IP KEYRPWLNVLLI++YAKED LE+ME +IN+AFEH TS+TT I+RCIV++Y+R
Sbjct: 349 LLKFIPGKEYRPWLNVLLIKLYAKEDWLEKMENAINEAFEHGTSITTKGILRCIVATYYR 408
Query: 416 CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKT 475
NAV+KL NFV+RAE +GW +CRS YH K+VMY SQ + M +VL+EME ++C+KKT
Sbjct: 409 YNAVEKLENFVRRAEISGWSICRSAYHCKLVMYGSQ--LPLMHNVLEEMEMVNLECTKKT 466
Query: 476 FWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
WIMY AY GQ V + LG M K+GY+VP++AFPS
Sbjct: 467 LWIMYKAYMRNGQSSMVLKTLGQMFKHGYEVPLSAFPS 504
>gi|87241379|gb|ABD33237.1| Pentatricopeptide repeat [Medicago truncatula]
Length = 514
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 235/434 (54%), Positives = 318/434 (73%), Gaps = 10/434 (2%)
Query: 85 VSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWR 144
V+ L +L+ D V +LDE L H +++L+ QL S+P L LEV+NWR
Sbjct: 86 VAILVKDLICVASDSVSVTSILDENSEFLIGSHP---VYIQLLNQLDSKPSLLLEVINWR 142
Query: 145 R-RQAGYG----TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199
R R+ + M EY+KGIK AGR N+DLA LF EA K +K TYNAL+GA
Sbjct: 143 RKRKVSFSDACRNSMQAHEYSKGIKAAGRSRNIDLAVALFKEAEFKGVKITSTYNALMGA 202
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
YM+NGLSDKC SLF D+KK+ PS+ TYN +ISVFGRL+L+DHMEA F+E+ + L+P
Sbjct: 203 YMFNGLSDKCYSLFLDMKKDPTCFPSVATYNIVISVFGRLMLIDHMEATFKEMNELPLAP 262
Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
N+ TYNYLI GY++ WMWG +E ++Q++ +GPV P+ TYLL++RGYAH GNL +MEKIY
Sbjct: 263 NISTYNYLIGGYISTWMWGDMERVFQVLNSGPVEPNMKTYLLMIRGYAHLGNLEKMEKIY 322
Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379
LVK +V+ + P+IR MICAY K S D++ K++AL++LIPEKEYRPWLNVLLI++YA+
Sbjct: 323 SLVKDNVN--DMPIIRVMICAYCKSSDADKMNKVKALLKLIPEKEYRPWLNVLLIKLYAE 380
Query: 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
+CLEEM+ +IN+AFE +T VTT+ IMRCI+++YFR NA++ L F +R+ AGWR+C S
Sbjct: 381 GNCLEEMDNAINEAFERRTVVTTMGIMRCIITAYFRNNAIESLEKFTRRSVLAGWRMCYS 440
Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
LYHSK+VMY SQ+ + EM++VL+EM++ I +KKT WIMY AY CGQR V ++LG M
Sbjct: 441 LYHSKLVMYGSQKNLREMQNVLEEMDSVNIQRTKKTMWIMYKAYWNCGQRSMVLKILGQM 500
Query: 500 CKNGYDVPVNAFPS 513
K+G++VP++AFPS
Sbjct: 501 FKHGHEVPIDAFPS 514
>gi|15224571|ref|NP_180636.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75219588|sp|O49343.1|PP177_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g30780
gi|2880055|gb|AAC02749.1| hypothetical protein [Arabidopsis thaliana]
gi|110736845|dbj|BAF00380.1| hypothetical protein [Arabidopsis thaliana]
gi|330253346|gb|AEC08440.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 452
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 237/424 (55%), Positives = 302/424 (71%)
Query: 80 DLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALE 139
DL Q VS L+DELL + +K VLD+KG LFR + +G +ELM QL R LAL+
Sbjct: 28 DLVQRVSILKDELLTIGNSKEKFQNVLDQKGQWLFRTYRDGAGILELMDQLFPRHYLALQ 87
Query: 140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199
VL WRR Q Y P+T EEY KGIK AGR +++LA LF EAA K ++T YN+L+
Sbjct: 88 VLEWRRGQKDYCIPLTSEEYAKGIKIAGRARDINLAVYLFDEAAKKRMQTASVYNSLMSV 147
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
YM+NGL+++CQSLF+D +++ + +P++VTYN L+SV+GRLL+V +MEAAF+E++ L P
Sbjct: 148 YMWNGLAEECQSLFKDFRRQTHCAPTVVTYNILVSVYGRLLMVKNMEAAFEELQKVKLPP 207
Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
N TYN+LIAGYMTAW W K+E +Q MK GPV PDT+TY L+LRGYA+SGNL RME++Y
Sbjct: 208 NSVTYNFLIAGYMTAWNWDKMEATFQEMKRGPVEPDTDTYQLMLRGYANSGNLNRMEEMY 267
Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379
E++K V PL+RAMICAY K +V DR++KIE L+ L+ +EY PWLNVLLIR+YA+
Sbjct: 268 EVIKDQVGVNSGPLVRAMICAYCKKAVEDRVQKIENLLSLLSGEEYLPWLNVLLIRLYAQ 327
Query: 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
ED +E ME IN+AFE KT V IMR I+++YFRCN VD LANFVKRAESAGW+LCRS
Sbjct: 328 EDFVEAMESKINEAFEQKTCVNKSSIMRAIIAAYFRCNEVDNLANFVKRAESAGWKLCRS 387
Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
LYH K++MY SQ+R EEME V+ EM KTF IM AY G +V G M
Sbjct: 388 LYHCKIMMYGSQKRFEEMEGVVNEMAETNYGLVTKTFAIMIKAYKNHGMESDAEKVKGKM 447
Query: 500 CKNG 503
K G
Sbjct: 448 LKRG 451
>gi|297822793|ref|XP_002879279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325118|gb|EFH55538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 452
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 244/458 (53%), Positives = 309/458 (67%), Gaps = 22/458 (4%)
Query: 46 FTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRV 105
FTR PA HT DL Q VS L+DELL + +K V
Sbjct: 16 FTRVTSLPAHHT----------------------DLVQRVSILKDELLTIGNSKEKFQNV 53
Query: 106 LDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKF 165
LD+KG LF+ + +G +ELM QL R LAL+VL WRR Q Y P+T EEY KGIK
Sbjct: 54 LDQKGQWLFKSYRDGAGILELMDQLFPRHYLALQVLEWRRGQKDYCIPLTSEEYAKGIKI 113
Query: 166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
AGR +++LA LF EAA K +T YNAL+ YM+NGL+D+CQSLF+D +++ + +P+
Sbjct: 114 AGRARDINLAVYLFDEAAKKRSQTASVYNALMSVYMWNGLADECQSLFKDFRRQTHCAPT 173
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+VTYN L+SV+GRLL+V +MEAAF+E++ LSPN TYN+LIAGYMTAW W K+E +Q
Sbjct: 174 VVTYNILVSVYGRLLMVKNMEAAFEELQKLKLSPNSVTYNFLIAGYMTAWNWDKMEATFQ 233
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
MK G V PDT+TY L+LRGYA+SGNL +ME++YE++K V PL+RAMICAY K +
Sbjct: 234 EMKRGLVEPDTDTYQLMLRGYANSGNLNKMEEMYEVIKDQVGVNSSPLVRAMICAYCKKA 293
Query: 346 VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRI 405
V DR++K+E L+ L+ +EY PWLN LLIR+YA+ED +E ME IN+AFEHKT V I
Sbjct: 294 VEDRVQKVENLLSLLSGEEYLPWLNGLLIRLYAQEDIVEAMESKINEAFEHKTCVNKSSI 353
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
MR I+++YFR N VD LANFVKRAESAGW+LCRSLYH K++MY SQ+R EEME VL EM
Sbjct: 354 MRAIIAAYFRFNEVDNLANFVKRAESAGWKLCRSLYHCKIMMYGSQKRFEEMEGVLNEMA 413
Query: 466 NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
KTF IMY AY G +V G+M K G
Sbjct: 414 ETNYGLVTKTFAIMYKAYKNHGMESDAEKVKGMMLKRG 451
>gi|357450593|ref|XP_003595573.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484621|gb|AES65824.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 621
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 232/434 (53%), Positives = 315/434 (72%), Gaps = 10/434 (2%)
Query: 85 VSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWR 144
V+ L +L+ D V +LDE L H +++L+ QL S+P L LEV+NWR
Sbjct: 86 VAILVKDLICVASDSVSVTSILDENSEFLIGSHP---VYIQLLNQLDSKPSLLLEVINWR 142
Query: 145 R-RQAGYG----TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199
R R+ + M EY+KGIK AGR N+DLA LF EA K +K TYNAL+GA
Sbjct: 143 RKRKVSFSDACRNSMQAHEYSKGIKAAGRSRNIDLAVALFKEAEFKGVKITSTYNALMGA 202
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
YM+NGLSDKC SLF D+KK+ PS+ TYN +ISVFGRL+L+DHMEA F+E+ + L+P
Sbjct: 203 YMFNGLSDKCYSLFLDMKKDPTCFPSVATYNIVISVFGRLMLIDHMEATFKEMNELPLAP 262
Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
N+ TYNYLI GY++ WMWG +E ++Q++ +GPV P+ TYLL++RGYAH GNL +MEKIY
Sbjct: 263 NISTYNYLIGGYISTWMWGDMERVFQVLNSGPVEPNMKTYLLMIRGYAHLGNLEKMEKIY 322
Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAK 379
LVK +V+ + P+IR MICAY K S D++ K++AL++LIPEKEYRPWLNVLLI++YA+
Sbjct: 323 SLVKDNVN--DMPIIRVMICAYCKSSDADKMNKVKALLKLIPEKEYRPWLNVLLIKLYAE 380
Query: 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
+CLEEM+ +IN+AFE +T VTT+ IMRCI+++YFR NA++ L F +R+ AGWR+C S
Sbjct: 381 GNCLEEMDNAINEAFERRTVVTTMGIMRCIITAYFRNNAIESLEKFTRRSVLAGWRMCYS 440
Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
LYHSK+VMY SQ+ + EM++VL+EM++ I +KKT WIMY AY CGQR V ++LG M
Sbjct: 441 LYHSKLVMYGSQKNLREMQNVLEEMDSVNIQRTKKTMWIMYKAYWNCGQRSMVLKILGQM 500
Query: 500 CKNGYDVPVNAFPS 513
K+G++VP++ S
Sbjct: 501 FKHGHEVPIDNMAS 514
>gi|224139152|ref|XP_002322993.1| predicted protein [Populus trichocarpa]
gi|222867623|gb|EEF04754.1| predicted protein [Populus trichocarpa]
Length = 360
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 221/359 (61%), Positives = 280/359 (77%)
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLF 213
MT EY KGI AG NVDLA ++F EA K +KT YNAL+ A M NGL+ KC+SLF
Sbjct: 1 MTAAEYAKGIMIAGTDKNVDLAVEIFDEAIKKCIKTTSMYNALMTACMCNGLAGKCESLF 60
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
R++K++ PS+VTYN L+SVFGRL+LVD MEA F+E++DS +SPN+ TYN LI+GY+T
Sbjct: 61 REMKRDVKCRPSVVTYNILVSVFGRLMLVDKMEAIFKEMEDSRISPNLTTYNNLISGYVT 120
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
WMW +E+ +QMM AGPV PD NT+LL+LRGYAHSG+L +ME +YEL+K HV+ + L
Sbjct: 121 VWMWDSMEKTFQMMIAGPVKPDLNTHLLMLRGYAHSGHLEQMELVYELIKDHVNARRLTL 180
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA 393
IRAMICAY K S+ +R++KIEALMRLIPEKEYRPWLNVLLI++YA+ED LE ME SIN+A
Sbjct: 181 IRAMICAYCKSSIPERVQKIEALMRLIPEKEYRPWLNVLLIKLYAEEDRLEGMENSINEA 240
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
F H+ +++TV IM+ I++SYFRCNAVDKL +F+KRA A WR+ R L+H KMVMY +Q+R
Sbjct: 241 FNHRITISTVSIMQAIITSYFRCNAVDKLTDFIKRATYARWRIIRPLFHCKMVMYGTQKR 300
Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFP 512
++EMESVL EMEN + +KKTFWI+Y AY CGQ KV QV GLMCK+GY P + P
Sbjct: 301 LDEMESVLIEMENCNLPRTKKTFWILYKAYLNCGQWYKVEQVAGLMCKHGYGNPFDTSP 359
>gi|357491603|ref|XP_003616089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517424|gb|AES99047.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 552
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 217/379 (57%), Positives = 292/379 (77%), Gaps = 7/379 (1%)
Query: 140 VLNWRR-RQAGYG----TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYN 194
V+NWRR R+ + M EY+KGIK AGR N+DLA +LF EA K LK TYN
Sbjct: 176 VINWRRKRKLSFSDACRNSMHAHEYSKGIKAAGRSRNIDLAVELFKEAEFKGLKITSTYN 235
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
AL+GAYM+NGLSDKC SLF D+KK+ PS+ TYN +ISVFGRL+L DHMEA F+E+ +
Sbjct: 236 ALMGAYMFNGLSDKCYSLFLDMKKDPTCYPSVATYNIVISVFGRLMLTDHMEATFKEMNE 295
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
L+PN+ TYNYLI GY++ WMWG +E ++Q++ +GPV P+ TYLL++RGYAH GNL +
Sbjct: 296 LPLAPNISTYNYLIGGYISTWMWGDMERVFQVLNSGPVEPNVKTYLLMIRGYAHLGNLEK 355
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI 374
MEKIY LVK +V+ + P+IR MICAY K S D++ K++AL++LIPEKEYRPWLNVLLI
Sbjct: 356 MEKIYSLVKDNVN--DIPIIRVMICAYCKSSDADKMNKVKALLKLIPEKEYRPWLNVLLI 413
Query: 375 RVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW 434
++YA+E+CLEEM+ +IN+AF+ +T VTT+ IMRCI+++YFR NA++ L F R+ AGW
Sbjct: 414 KLYAEENCLEEMDNAINEAFKRRTVVTTMGIMRCIITAYFRNNAIESLEKFTIRSVLAGW 473
Query: 435 RLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQ 494
R+C SLYHSK+VMY SQ+ + EM++VL+EM++ + +KKT WIMY AY +CGQR V +
Sbjct: 474 RMCYSLYHSKLVMYGSQKNLREMQNVLEEMDSVNMQRTKKTLWIMYKAYWSCGQRSLVLK 533
Query: 495 VLGLMCKNGYDVPVNAFPS 513
+LG M K+G++VP++AFPS
Sbjct: 534 ILGQMFKHGHEVPIDAFPS 552
>gi|357491601|ref|XP_003616088.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517423|gb|AES99046.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 494
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 217/379 (57%), Positives = 292/379 (77%), Gaps = 7/379 (1%)
Query: 140 VLNWRR-RQAGYG----TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYN 194
V+NWRR R+ + M EY+KGIK AGR N+DLA +LF EA K LK TYN
Sbjct: 118 VINWRRKRKLSFSDACRNSMHAHEYSKGIKAAGRSRNIDLAVELFKEAEFKGLKITSTYN 177
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
AL+GAYM+NGLSDKC SLF D+KK+ PS+ TYN +ISVFGRL+L DHMEA F+E+ +
Sbjct: 178 ALMGAYMFNGLSDKCYSLFLDMKKDPTCYPSVATYNIVISVFGRLMLTDHMEATFKEMNE 237
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
L+PN+ TYNYLI GY++ WMWG +E ++Q++ +GPV P+ TYLL++RGYAH GNL +
Sbjct: 238 LPLAPNISTYNYLIGGYISTWMWGDMERVFQVLNSGPVEPNVKTYLLMIRGYAHLGNLEK 297
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI 374
MEKIY LVK +V+ + P+IR MICAY K S D++ K++AL++LIPEKEYRPWLNVLLI
Sbjct: 298 MEKIYSLVKDNVN--DIPIIRVMICAYCKSSDADKMNKVKALLKLIPEKEYRPWLNVLLI 355
Query: 375 RVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW 434
++YA+E+CLEEM+ +IN+AF+ +T VTT+ IMRCI+++YFR NA++ L F R+ AGW
Sbjct: 356 KLYAEENCLEEMDNAINEAFKRRTVVTTMGIMRCIITAYFRNNAIESLEKFTIRSVLAGW 415
Query: 435 RLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQ 494
R+C SLYHSK+VMY SQ+ + EM++VL+EM++ + +KKT WIMY AY +CGQR V +
Sbjct: 416 RMCYSLYHSKLVMYGSQKNLREMQNVLEEMDSVNMQRTKKTLWIMYKAYWSCGQRSLVLK 475
Query: 495 VLGLMCKNGYDVPVNAFPS 513
+LG M K+G++VP++AFPS
Sbjct: 476 ILGQMFKHGHEVPIDAFPS 494
>gi|334184981|ref|NP_850482.3| pentatricopeptide repeat-containing protein-like protein
[Arabidopsis thaliana]
gi|75268024|sp|Q9ZU88.1|PP204_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g48000
gi|4249407|gb|AAD13704.1| hypothetical protein [Arabidopsis thaliana]
gi|330255828|gb|AEC10922.1| pentatricopeptide repeat-containing protein-like protein
[Arabidopsis thaliana]
Length = 481
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 241/510 (47%), Positives = 316/510 (61%), Gaps = 50/510 (9%)
Query: 2 KRVWKLSDAAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPT 61
KR+W++S +Q LL + SS KTL P FTL++SP H D
Sbjct: 3 KRMWRISLISQISDLLCLSRGSSSTLKTLTPF-CFTLSRSPFHQSGGD------------ 49
Query: 62 LVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGY 121
DA S L+++LL +D KV VL+ R G
Sbjct: 50 -----------DDA----------SGLKNQLLRFRNDSGKVASVLE-------RNKIQGA 81
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQA-GYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
AFVEL++QL P L+ V +WRR +A G PMT +EY KGI +GR+ NVDLA LF
Sbjct: 82 AFVELLRQLRPWPVLSQLVFDWRRNKALCDGLPMTADEYAKGITISGRLKNVDLALSLFH 141
Query: 181 EAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN----ISPSIVTYNTLISVF 236
E+ANK T YNAL+GAY+ NGLS C+ LF D + + +PS+ TYN LIS++
Sbjct: 142 ESANK---TTSVYNALMGAYLCNGLSHHCEQLFLDFNSQQDGPSSSTPSVSTYNILISLY 198
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
GRL++V+ ME+ F +++ N+ P+ TYN LIAGY+ AW W K+E + MK G V P
Sbjct: 199 GRLIMVERMESVFLQLQQLNILPDSSTYNNLIAGYIYAWDWDKMEATFHSMKNGLVKPTL 258
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
TYLL+LRGYA+SGNL RME +Y+ VK HVD E LI +MICAY + DRI+KI+ L
Sbjct: 259 ATYLLMLRGYANSGNLLRMEDMYQAVKRHVDRNEIKLIESMICAYYRSCHKDRIRKIKTL 318
Query: 357 MRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC 416
+LIP+K Y+PWL +LL++VYAK+D L ME I+ A + T IMR IV+SYFRC
Sbjct: 319 SKLIPKKSYKPWLYLLLMQVYAKDDNLHAMENFIDQAITKGLQIETDGIMRSIVASYFRC 378
Query: 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476
NAVDKLA FV+RA SAGW++ RS++H M+MY SQ+R +EME+VL EME++KI SKKT
Sbjct: 379 NAVDKLAKFVQRANSAGWKMSRSMFHGLMIMYGSQKRFKEMENVLSEMESFKISRSKKTL 438
Query: 477 WIMYYAY-ATCGQRRKVNQVLGLMCKNGYD 505
I+ Y AT GQ KVNQV G+M K+G+D
Sbjct: 439 CILLRVYAATHGQEHKVNQVAGMMLKHGHD 468
>gi|20466534|gb|AAM20584.1| unknown protein [Arabidopsis thaliana]
gi|22136460|gb|AAM91308.1| unknown protein [Arabidopsis thaliana]
Length = 367
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 192/357 (53%), Positives = 250/357 (70%), Gaps = 8/357 (2%)
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLF 213
MT +EY KGI +GR+ NVDLA LF E+ANK T YNAL+GAY+ NGLS C+ LF
Sbjct: 1 MTADEYAKGITISGRLKNVDLALSLFHESANK---TTSVYNALMGAYLCNGLSHHCEQLF 57
Query: 214 RDLKKEAN----ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
D + + +PS+ TYN LIS++GRL++V+ ME+ F +++ N+ P+ TYN LIA
Sbjct: 58 LDFNSQQDGPSSSTPSVSTYNILISLYGRLIMVERMESVFLQLQQLNILPDSSTYNNLIA 117
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329
GY+ AW W K+E + MK G V P TYLL+LRGYA+SGNL RME +Y+ VK HVD
Sbjct: 118 GYIYAWDWDKMEATFHSMKNGLVKPTLATYLLMLRGYANSGNLLRMEDMYQAVKRHVDRN 177
Query: 330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKS 389
E LI +MICAY + DRI+KI+ L +LIP+K Y+PWL +LL++VYAK+D L ME
Sbjct: 178 EIKLIESMICAYYRSCHKDRIRKIKTLSKLIPKKSYKPWLYLLLMQVYAKDDNLHAMENF 237
Query: 390 INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYA 449
I+ A + T IMR IV+SYFRCNAVDKLA FV+RA SAGW++ RS++H M+MY
Sbjct: 238 IDQAITKGLQIETDGIMRSIVASYFRCNAVDKLAKFVQRANSAGWKMSRSMFHGLMIMYG 297
Query: 450 SQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY-ATCGQRRKVNQVLGLMCKNGYD 505
SQ+R +EME+VL EME++KI SKKT I+ Y AT GQ KVNQV G+M K+G+D
Sbjct: 298 SQKRFKEMENVLSEMESFKISRSKKTLCILLRVYAATHGQEHKVNQVAGMMLKHGHD 354
>gi|357129195|ref|XP_003566251.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g30780-like [Brachypodium distachyon]
Length = 502
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/376 (47%), Positives = 253/376 (67%), Gaps = 4/376 (1%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT 192
+P L L V ++RR A P T E+T I A R + A LFA+A++
Sbjct: 127 KPCLGLAVFSFRRTLA---PPPTLPEFTLAISLASRARDPATAGILFADASSSCCPDQAL 183
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNTLISVFGRLLLVDHMEAAFQE 251
YNAL+ AYM++GL D+C F+DL++++ P + +YN LI++FGR LLVDHMEA Q
Sbjct: 184 YNALMSAYMHSGLVDRCLETFQDLQRDSRCGPPNADSYNILIALFGRSLLVDHMEATLQS 243
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ S + TYN +IAGY+TAWMW K+E ++ M V PDT T+LL+LRGYAH+G
Sbjct: 244 LDASGQPRTIGTYNAIIAGYLTAWMWDKMEAMFHEMVESQVDPDTTTHLLMLRGYAHAGM 303
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ +ME+ +E + IRAM+CAY K + D+I+KIE L++ + ++YRPWLNV
Sbjct: 304 IYKMERAHERACERAGKIDMVHIRAMLCAYCKFAHVDKIQKIEKLLQKLGPEDYRPWLNV 363
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
LLIRVYA E ++ ME+ I +A E T+VTT +MR +++SYF+C+AVD+LA+FV++AE
Sbjct: 364 LLIRVYANEGLVDGMERRITEALERNTTVTTTHVMRSVITSYFQCDAVDRLAHFVQQAEE 423
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
AGW+LCRSLYH KMVMY R+EEM VL+EME ++ D +KKTFWIM+ AY +CG+R +
Sbjct: 424 AGWKLCRSLYHCKMVMYGKHHRLEEMHGVLEEMEYFRFDRTKKTFWIMHKAYVSCGRRSE 483
Query: 492 VNQVLGLMCKNGYDVP 507
+ +LG+M K G+ P
Sbjct: 484 ADTILGMMWKAGFGFP 499
>gi|242090501|ref|XP_002441083.1| hypothetical protein SORBIDRAFT_09g020090 [Sorghum bicolor]
gi|241946368|gb|EES19513.1| hypothetical protein SORBIDRAFT_09g020090 [Sorghum bicolor]
Length = 506
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 186/379 (49%), Positives = 251/379 (66%), Gaps = 6/379 (1%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTK-EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG 191
RPRL L V ++RR +P+ E+ I A R + D AA LFA+ H G
Sbjct: 128 RPRLGLAVFSFRRAL----SPVPSLGEFALAISLASRARDHDAAAALFADGTATHSPNQG 183
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV-TYNTLISVFGRLLLVDHMEAAFQ 250
YNAL+ AYM+NGL D C F L+++ P V +YN LI+++GR LLVDHMEA Q
Sbjct: 184 LYNALMAAYMHNGLLDSCIETFHALERDPRCGPPNVDSYNILIALYGRSLLVDHMEATLQ 243
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ S + TYN +I+GY+TAWMW K+E ++ M +G V PD T+LL+LRGYAH+G
Sbjct: 244 SLDASGQPRTIGTYNAIISGYLTAWMWDKMEAVFHEMVSGHVAPDATTHLLMLRGYAHAG 303
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+ +ME+ YE V + IRAM+CAY K RI+KIE L++ + +YRPWLN
Sbjct: 304 RIYKMEQAYEHACKLVRKFDIVHIRAMLCAYCKFYHVGRIQKIEDLLKQLGPDDYRPWLN 363
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
VLLI+VYA+E ++ ME I++A +H T V T+++MR I+ SYFR +AVDKL +FV+ AE
Sbjct: 364 VLLIKVYAQEGLVDGMELHISEALQHNTIVNTIKVMRAIICSYFRYDAVDKLVHFVRLAE 423
Query: 431 SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRR 490
AGW+LCRSLYH KMVMY + R+EEM VL EME +KID +KKTFWIMY AY +CG+R
Sbjct: 424 EAGWKLCRSLYHCKMVMYGNHHRLEEMHGVLDEMECFKIDRTKKTFWIMYKAYVSCGRRA 483
Query: 491 KVNQVLGLMCKNGYDVPVN 509
+ N +LG+M K+G+ +P N
Sbjct: 484 EANTILGMMWKHGFGLPRN 502
>gi|413945320|gb|AFW77969.1| hypothetical protein ZEAMMB73_790751 [Zea mays]
Length = 509
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 180/376 (47%), Positives = 245/376 (65%), Gaps = 6/376 (1%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTK-EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG 191
RPRL L V ++RR +P+ E+ I AGR + D AA LFA+ H +G
Sbjct: 131 RPRLGLAVFSFRRVL----SPVPSISEFALAISLAGRAGDHDAAAALFADGTAIHSPNLG 186
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNTLISVFGRLLLVDHMEAAFQ 250
YNAL+ AYM++GL D C +F L+++ P ++ +YN LI++FGR +LVDHME Q
Sbjct: 187 LYNALMSAYMHSGLLDNCIEVFHALERDPRCGPPNVDSYNILIALFGRSILVDHMERTLQ 246
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ S + TYN +I+GY+TAWMW K+E +Q M + V PD T+ L+LRGYAH+G
Sbjct: 247 SLDASGQPRTIGTYNAIISGYLTAWMWDKMEASFQEMVSFHVAPDATTHKLMLRGYAHAG 306
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+ +ME+ YE + IRAM+CAY K RI+KIE L++ + +YRPWLN
Sbjct: 307 MICKMEQAYERACKLGIKVDILHIRAMLCAYCKFYHVGRIQKIEDLLKKLGPDDYRPWLN 366
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
VLLI+VYA+E E ME I++A E T VT V++MR I+ +YF+ +AVD+LA FV+RAE
Sbjct: 367 VLLIKVYAQEGLTEGMELYISEALERNTIVTAVKVMRSIICNYFQYDAVDRLALFVRRAE 426
Query: 431 SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRR 490
AGW+LCRSLYH KMVMY R+EEM VL EME K D +KKTFWIMY AY +CG+R
Sbjct: 427 DAGWKLCRSLYHCKMVMYGKHYRLEEMHGVLDEMECLKFDRTKKTFWIMYKAYVSCGRRT 486
Query: 491 KVNQVLGLMCKNGYDV 506
+ N ++G+M K+G+ V
Sbjct: 487 EANTIIGMMWKHGFAV 502
>gi|55733932|gb|AAV59439.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 498
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 183/379 (48%), Positives = 248/379 (65%), Gaps = 4/379 (1%)
Query: 134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTY 193
P+L L V + RR + P T E+ I AGR + AA LFAEA+ + Y
Sbjct: 121 PQLGLAVFSSRRTLS---PPATLPEFVLAISLAGRARDPAAAARLFAEASTAYCPDQALY 177
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV-TYNTLISVFGRLLLVDHMEAAFQEI 252
NAL+ +YM++GL+D+C F L+++ P +YN LI++FGR LLVDHMEA +
Sbjct: 178 NALMSSYMHSGLADRCIEAFHTLERDPRCGPPNADSYNILIALFGRSLLVDHMEATLLSL 237
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
S + TYN +IAGY+TAWMW K+E ++ M +G V PD TYLL+LRGYAH+G +
Sbjct: 238 DASGHPRTIGTYNAIIAGYLTAWMWEKMESVFDEMVSGHVAPDKTTYLLMLRGYAHAGMI 297
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL 372
+ME YE + HV + IRAMICAY K DRI+KIE L++ + +YRPWL VL
Sbjct: 298 YKMELAYERARQHVGQVDMVHIRAMICAYCKFKHVDRIQKIEELLQKLGPDDYRPWLAVL 357
Query: 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA 432
LIR YA+E +E ME+ I +A E T VTTV++MR I++SYF+C+AVDKLA+F+++AE A
Sbjct: 358 LIRAYAQEGLVERMEQWIAEALERNTIVTTVQVMRSIITSYFQCDAVDKLAHFIRQAEEA 417
Query: 433 GWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
GW+LCRSLYH KMVMY Q R+ EM VL EME ++ D +KKTFWIMY AY + G+ +
Sbjct: 418 GWKLCRSLYHCKMVMYGKQHRLPEMHGVLDEMEFFRFDRTKKTFWIMYKAYVSSGRMAEA 477
Query: 493 NQVLGLMCKNGYDVPVNAF 511
N +L +M K+G+ P +
Sbjct: 478 NTILCMMGKHGFGFPRGGY 496
>gi|297604496|ref|NP_001055521.2| Os05g0407900 [Oryza sativa Japonica Group]
gi|222631563|gb|EEE63695.1| hypothetical protein OsJ_18513 [Oryza sativa Japonica Group]
gi|255676360|dbj|BAF17435.2| Os05g0407900 [Oryza sativa Japonica Group]
Length = 607
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 183/375 (48%), Positives = 247/375 (65%), Gaps = 4/375 (1%)
Query: 134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTY 193
P+L L V + RR + P T E+ I AGR + AA LFAEA+ + Y
Sbjct: 121 PQLGLAVFSSRRTLS---PPATLPEFVLAISLAGRARDPAAAARLFAEASTAYCPDQALY 177
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV-TYNTLISVFGRLLLVDHMEAAFQEI 252
NAL+ +YM++GL+D+C F L+++ P +YN LI++FGR LLVDHMEA +
Sbjct: 178 NALMSSYMHSGLADRCIEAFHTLERDPRCGPPNADSYNILIALFGRSLLVDHMEATLLSL 237
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
S + TYN +IAGY+TAWMW K+E ++ M +G V PD TYLL+LRGYAH+G +
Sbjct: 238 DASGHPRTIGTYNAIIAGYLTAWMWEKMESVFDEMVSGHVAPDKTTYLLMLRGYAHAGMI 297
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL 372
+ME YE + HV + IRAMICAY K DRI+KIE L++ + +YRPWL VL
Sbjct: 298 YKMELAYERARQHVGQVDMVHIRAMICAYCKFKHVDRIQKIEELLQKLGPDDYRPWLAVL 357
Query: 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA 432
LIR YA+E +E ME+ I +A E T VTTV++MR I++SYF+C+AVDKLA+F+++AE A
Sbjct: 358 LIRAYAQEGLVERMEQWIAEALERNTIVTTVQVMRSIITSYFQCDAVDKLAHFIRQAEEA 417
Query: 433 GWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
GW+LCRSLYH KMVMY Q R+ EM VL EME ++ D +KKTFWIMY AY + G+ +
Sbjct: 418 GWKLCRSLYHCKMVMYGKQHRLPEMHGVLDEMEFFRFDRTKKTFWIMYKAYVSSGRMAEA 477
Query: 493 NQVLGLMCKNGYDVP 507
N +L +M K+G+ P
Sbjct: 478 NTILCMMGKHGFGFP 492
>gi|125552311|gb|EAY98020.1| hypothetical protein OsI_19934 [Oryza sativa Indica Group]
Length = 607
Score = 347 bits (891), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 183/375 (48%), Positives = 247/375 (65%), Gaps = 4/375 (1%)
Query: 134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTY 193
P+L L V + RR + P T E+ I AGR + AA LFAEA+ + Y
Sbjct: 121 PQLGLAVFSSRRTLS---PPATLPEFVLAISLAGRARDPAAAARLFAEASTAYCPDQALY 177
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNTLISVFGRLLLVDHMEAAFQEI 252
NAL+ +YM++GL+D+C F L+++ P + +YN LI++FGR LLVDHMEA +
Sbjct: 178 NALMSSYMHSGLADRCIEAFHTLERDPRCGPPNADSYNILIALFGRSLLVDHMEATLLSL 237
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
S + TYN +IAGY+TAWMW K+E ++ M +G V PD TYLL+LRGYAH+G +
Sbjct: 238 DASGHPRTIGTYNAIIAGYLTAWMWEKMESVFDEMVSGHVAPDKTTYLLMLRGYAHAGMI 297
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL 372
+ME YE + HV + IRAMICAY K DRI+KIE L++ + +YRPWL VL
Sbjct: 298 YKMELAYERARQHVGQVDMVHIRAMICAYCKFKHVDRIQKIEELLQKLGPDDYRPWLAVL 357
Query: 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA 432
LIR YA+E +E ME+ I +A E T VTTV++MR I++SYF+C+AVDKLA+F+++AE A
Sbjct: 358 LIRAYAQEGLVERMEQWIAEALERNTIVTTVQVMRSIITSYFQCDAVDKLAHFIRQAEEA 417
Query: 433 GWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
GW+LCRSLYH KMVMY Q R+ EM VL EME ++ D +KKTFWIMY AY G+ +
Sbjct: 418 GWKLCRSLYHCKMVMYGKQHRLPEMHWVLDEMEFFRFDRTKKTFWIMYKAYVNSGRMAEA 477
Query: 493 NQVLGLMCKNGYDVP 507
N +L +M K+G+ P
Sbjct: 478 NTILCMMGKHGFGFP 492
>gi|326525126|dbj|BAK07833.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 435
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 137/300 (45%), Positives = 195/300 (65%), Gaps = 4/300 (1%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT 192
+P + L V ++RR P T E+ I A R + AA++F +A++ +
Sbjct: 125 KPHVGLAVFSFRRT---LSPPPTLPEFVVAISLASRARDPTAAANIFTDASSAYCPDQAL 181
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV-TYNTLISVFGRLLLVDHMEAAFQE 251
YNAL+ AYM++GL + C F L+++ P +YN LI++FGR LLVDHMEA Q
Sbjct: 182 YNALMSAYMHSGLVNCCVEAFHALQRDPRCGPPNADSYNILIALFGRSLLVDHMEATLQS 241
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ S + TYN +IAGY+TAWMW K+E ++ M AG V PDT T+LL+LRGYAH+G
Sbjct: 242 LDVSGQPRTIGTYNAIIAGYLTAWMWDKMEAVFHEMIAGGVGPDTTTHLLMLRGYAHAGK 301
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ +ME YE + H + IRAM+CAY K + DRI+KIE L+ + ++YRPWLNV
Sbjct: 302 IYKMELAYERAREHAGEVDMVHIRAMLCAYCKFAHVDRIQKIEELLLKLRPEDYRPWLNV 361
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
LLIRVYA E +E ME+ I +A EH T+VTT ++MR I+++YF+C+AVD+LA+FV++AE
Sbjct: 362 LLIRVYAVEGLVEGMERRIAEALEHNTTVTTTQVMRSIITNYFQCDAVDRLAHFVRQAEG 421
>gi|1785620|emb|CAB06334.1| ORFb [Arabidopsis thaliana]
Length = 288
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/220 (51%), Positives = 148/220 (67%), Gaps = 8/220 (3%)
Query: 136 LALEVLNWRRRQA-GYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYN 194
+AL+V +WRR +A G PMT +EY KGI +GR+ NVDLA LF E+ANK T YN
Sbjct: 62 VALQVFDWRRNKALCDGLPMTADEYAKGITISGRLKNVDLALSLFHESANK---TTSVYN 118
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEAN----ISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
AL+GAY+ NGLS C+ LF D + + +PS+ TYN LIS++GRL++V+ ME+ F
Sbjct: 119 ALMGAYLCNGLSHHCEQLFLDFNSQQDGPSSSTPSVSTYNILISLYGRLIMVERMESVFL 178
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+++ N+ P+ TYN LIAGY+ AW W K+E + MK G V P TYLL+LRGYA+SG
Sbjct: 179 QLQQLNILPDSSTYNNLIAGYIYAWDWDKMEATFHSMKNGLVKPTLATYLLMLRGYANSG 238
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI 350
NL RME +Y+ VK HVD E LI +MICAY + DRI
Sbjct: 239 NLLRMEDMYQAVKRHVDRNEIKLIESMICAYYRSCHKDRI 278
>gi|168000535|ref|XP_001752971.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695670|gb|EDQ82012.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 391
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 114/376 (30%), Positives = 199/376 (52%), Gaps = 3/376 (0%)
Query: 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALL 197
+V NW++ + G+ +EY K I FAGRI+ LAADLF E + +K T ++NAL+
Sbjct: 1 QVFNWKKSKLGW--EANPKEYAKMISFAGRISQPQLAADLFDEMEKRGIKKTAVSFNALI 58
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
+Y N + K LF D+K + P++VTYNTLIS++ R+ + M+ F + K++
Sbjct: 59 HSYGRNNEAHKALQLFEDMKATNDCQPTLVTYNTLISMYSRMGATEEMKKLFLDCKEAGF 118
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
SP+ TYN LI GYM A ++EE + ++AG D TY + GYA + + +ME
Sbjct: 119 SPDRHTYNALIWGYMRAGQLSQMEETFNELQAGECKADVITYNAQIIGYARANAVNKMEA 178
Query: 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVY 377
++ ++ + +I YS+ ++++ +M + P +Y ++ ++I Y
Sbjct: 179 VFSSMQAAGIPINAMVGEILIEVYSRTKHFEKMENALKIMDVTPGVQYGSRVHSMVIESY 238
Query: 378 AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC 437
A + L+EME +I+ F++K ++ + + ++ +Y R +LA ++ + AGW L
Sbjct: 239 ADANKLDEMEAAISRMFQNKRMFSSPKSLHALIMAYSRAGEYGRLAKTMEVVKGAGWILQ 298
Query: 438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLG 497
S+Y+ + Y ++ ME V +EM + S +TF M AY +V+++L
Sbjct: 299 SSIYNILISEYGKGGHLDRMEQVFREMMDASCPPSFETFQYMIDAYEANNNEAEVDRILD 358
Query: 498 LMCKNGYDVPVNAFPS 513
LM K G + N P+
Sbjct: 359 LMRKAGCEPKSNVMPT 374
>gi|297828517|ref|XP_002882141.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297327980|gb|EFH58400.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 323
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/136 (48%), Positives = 92/136 (67%), Gaps = 10/136 (7%)
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
+LI +Y ++ +++I + +T T MR IV+SYFRCNA DKLA F++RA S
Sbjct: 188 ILISLYGRD-----TDQAITKGLQIETDGT----MRSIVASYFRCNAADKLAKFMQRAIS 238
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY-ATCGQRR 490
AGW++ RS++H M+MY SQ+R +EME VL EME + I SKKTF I++ Y A GQ
Sbjct: 239 AGWKMSRSMFHGLMIMYGSQKRFKEMEDVLSEMERFNISRSKKTFCILHRVYVAAHGQEH 298
Query: 491 KVNQVLGLMCKNGYDV 506
KVNQV G+M K+G+D+
Sbjct: 299 KVNQVAGMMLKDGHDL 314
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 95/160 (59%), Gaps = 17/160 (10%)
Query: 83 QTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLN 142
++ SAL+ +LL +D DKV VL+ G AF+EL++QL P L+L V +
Sbjct: 49 KSASALKTQLLRFCNDSDKVASVLESHDEI------QGAAFLELLRQLRPWPVLSLVVFD 102
Query: 143 WRRRQA-GYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYM 201
WRR +A G PMT KGI +GR+ NVDLA LF E+ K T YNAL+GAYM
Sbjct: 103 WRRNKALCDGVPMT----AKGITISGRLKNVDLALSLFNESPKK---TTSLYNALMGAYM 155
Query: 202 YNGLSDKCQSLFRDLKKEA---NISPSIVTYNTLISVFGR 238
NGL+D C+ LF D + + +PS+ TYN LIS++GR
Sbjct: 156 CNGLADDCKQLFLDFNAQQRGHSSTPSVSTYNILISLYGR 195
>gi|168039319|ref|XP_001772145.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676476|gb|EDQ62958.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 313
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 151/300 (50%), Gaps = 18/300 (6%)
Query: 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALL 197
+V NW++ + + + +EY K I FAGRIN LAADLF E + +K T +YNAL+
Sbjct: 1 QVFNWKKSKLRW--EVNPKEYAKMISFAGRINQPQLAADLFDEMEKRGIKKTAVSYNALI 58
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
+Y N K LF +K + P++VTYNTLIS++ R+ + M+ F + ++
Sbjct: 59 HSYGRNNEPQKALQLFEYMKVTVDCQPTLVTYNTLISMYSRMGATEEMKKIFLDCTEAEF 118
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
P+ TYN LI GYM A ++E + ++A D TY L+ GYA + + +M
Sbjct: 119 VPDRHTYNALIWGYMRAGQLNEMEVTFNELQAKKFNADVITYNALIIGYARANAVDKM-- 176
Query: 318 IYELVKHHVDGKEFPL----IRAMICAYSKCSVTDRIKKIEALMRLIPEKEY--RPWLNV 371
E+V + P+ + A+I AYS+ DR+ K M ++ + + +P
Sbjct: 177 --EVVLSSMQAVGIPINTMALHALIMAYSRAGTYDRLAKT---MEVVKDAGWMLQPATYN 231
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEH--KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
+LI Y K L++ME++ + K S T + M + VD++ + +++A
Sbjct: 232 ILISEYGKVGYLDKMEQAFREMMNASVKPSFETFQYMINAYEAADNETQVDRILDLMRKA 291
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 1/104 (0%)
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
+AL+ AY G D+ ++ K+A TYN LIS +G++ +D ME AF+E+
Sbjct: 196 HALIMAYSRAGTYDRLAKTM-EVVKDAGWMLQPATYNILISEYGKVGYLDKMEQAFREMM 254
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN 297
++++ P+ T+ Y+I Y A +V+ I +M+ P +N
Sbjct: 255 NASVKPSFETFQYMINAYEAADNETQVDRILDLMRKAGCEPKSN 298
>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
Length = 795
Score = 115 bits (288), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 111/446 (24%), Positives = 197/446 (44%), Gaps = 27/446 (6%)
Query: 78 RKDLTQTVSALRDELLANVDDLDKVF--RVLDEKGSCLFRRHSNGYAFVELMKQLGSRPR 135
R+ L + + + DE+ A + DKV +LD G R+H ++ M+ G P
Sbjct: 267 RRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKA--RKHEEAIGVLKRMENAGCTPS 324
Query: 136 LAL---------------EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
+ E L ++ G YT I R+ +D A ++
Sbjct: 325 VVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRVGKIDAALATYS 384
Query: 181 EAA-NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
E N + TYNAL+ + G + ++F DL+ A P +VT+NTL+SVFG+
Sbjct: 385 EMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRS-AGYVPDVVTWNTLLSVFGQN 443
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
L + F+E+K + P TY LI+ Y ++ + EIY+ M + PD +TY
Sbjct: 444 GLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTY 503
Query: 300 LLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
+L A G + EK++ E+V E +++ AY+ D++K +
Sbjct: 504 NAVLSALARGGRWEQAEKLFAEMVDRDCKPDELSY-SSLLHAYANAKKLDKMKTLSE--D 560
Query: 359 LIPEK-EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN 417
+ E+ E WL L+ V K + L E EK+ + + S+ + ++ +VS Y +
Sbjct: 561 IYAERIERHNWLVKTLVLVNNKVNNLPETEKAFQELRRRRCSL-DINVLNAMVSIYGKNK 619
Query: 418 AVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW 477
V K+ + + Y+S M MY+ E+ ES+L E+++ + + ++
Sbjct: 620 MVKKVEEVLSLMMENSINHSAATYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYN 679
Query: 478 IMYYAYATCGQRRKVNQVLGLMCKNG 503
+ YAY GQ ++ +++ M +G
Sbjct: 680 TVIYAYGRKGQMKEASRLFSEMKCSG 705
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 3/144 (2%)
Query: 169 INNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ V+ L E + H + TYN+L+ Y G +KC+S+ ++K + + P +
Sbjct: 621 VKKVEEVLSLMMENSINH--SAATYNSLMHMYSRLGDCEKCESILTEIKS-SGMRPDRYS 677
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YNT+I +GR + F E+K S + P++ TYN I Y+ M+ + ++ + +
Sbjct: 678 YNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLV 737
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNL 312
P+ T+ +L+GY+ G +
Sbjct: 738 TQGCRPNERTFNSILQGYSRHGRM 761
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
++NN+ F E + I NA++ Y N + K + + L E +I+ S
Sbjct: 582 KVNNLPETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVL-SLMMENSINHSA 640
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TYN+L+ ++ RL + E+ EIK S + P+ ++YN +I Y + ++
Sbjct: 641 ATYNSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSE 700
Query: 287 MKAGPVMPDTNTYLLLLRGY 306
MK V PD TY + ++ Y
Sbjct: 701 MKCSGVKPDIVTYNIFIKSY 720
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 125/337 (37%), Gaps = 51/337 (15%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA--F 249
TYN + AY + K D KE I TYNTLIS R L H EAA F
Sbjct: 221 TYNVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTYNTLISCCRRRGL--HREAAQVF 278
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
E+K + P+ T+N L+ Y A + + + M+ P TY L+ Y
Sbjct: 279 DEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMENAGCTPSVVTYNSLISAYVKD 338
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-CSVTDRIKKIEALMRLIPE---KEY 365
G L E+ EL + EF ++ + Y+ S DR+ KI+A + E
Sbjct: 339 GLL---EEALELKQE----MEFRGMKPDVVTYTTLISGLDRVGKIDAALATYSEMVRNGC 391
Query: 366 RPWLNV--LLIRVYAKEDCLEEMEKSIND-----------------------AFEHKTSV 400
P L LI+++ EM +D + + S
Sbjct: 392 SPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVTWNTLLSVFGQNGLDSEVSG 451
Query: 401 TTVRIMRC-----------IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYA 449
+ + ++SSY RC D+ KR AG S Y++ + A
Sbjct: 452 VFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALA 511
Query: 450 SQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
R E+ E + EM + + ++ + +AYA
Sbjct: 512 RGGRWEQAEKLFAEMVDRDCKPDELSYSSLLHAYANA 548
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM-W 277
EA +P Y L+S F R A FQ + D + P + TYN + Y + W
Sbjct: 177 EAAPAPDASAYTALVSAFSRAGRFRDAVAVFQRMVDGGVQPALVTYNVVFHAYSKMSVPW 236
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLL 303
+V + MK + D TY L+
Sbjct: 237 KEVVALVDSMKEDGIERDRYTYNTLI 262
>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
Length = 784
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 113/451 (25%), Positives = 209/451 (46%), Gaps = 37/451 (8%)
Query: 78 RKDLTQTVSALRDELLANVDDLDKVF--RVLDEKGSCLFRRHSNGYAFVELMKQLGSRPR 135
R+ L + + + DE+ A+ + DKV +LD G RRH ++ M+++G P
Sbjct: 255 RRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKA--RRHDEAIEVIQEMERVGCPP- 311
Query: 136 LALEVLNWRRRQAGY--------GTPMTKEEYTKGIK---------FAG--RINNVDLAA 176
V+ + + Y + +E KGIK +G R +D A
Sbjct: 312 ---SVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAI 368
Query: 177 DLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
+ E K + TYNAL+ + G + ++F +L+ A P IVT+NTL++V
Sbjct: 369 VEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRS-AGFVPDIVTWNTLLAV 427
Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
FG+ L + F+E+K + P TY LI+ Y ++ +IY+ M + PD
Sbjct: 428 FGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPD 487
Query: 296 TNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE 354
+TY +L A G + EK++ E+ + E+ +++ AY+ R+ K++
Sbjct: 488 VSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSY-SSLLHAYANAK---RLDKMK 543
Query: 355 ALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS 412
AL I + P WL L+ V +K + L E EK+ + + + S+ + ++ +VS
Sbjct: 544 ALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSL-DINVLNAMVSI 602
Query: 413 YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS 472
Y + V K+ + + + L + Y+S M MY+ E+ E++L E+++ +
Sbjct: 603 YGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPD 662
Query: 473 KKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ ++ + YAY GQ ++ +++ M +G
Sbjct: 663 RYSYNTVIYAYGRKGQMKEASRLFSEMKCSG 693
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+ TYN+L+ Y G +KC+++ ++K + + P +YNT+I +GR +
Sbjct: 627 SAATYNSLMHMYSRLGDCEKCENILTEIKS-SGVRPDRYSYNTVIYAYGRKGQMKEASRL 685
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F E+K S L P+V TYN + Y++ M+ + E+ + M P+ TY ++ GY
Sbjct: 686 FSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCR 745
Query: 309 SGNL 312
+G L
Sbjct: 746 NGKL 749
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
++NN+ A F E K I NA++ Y N + K + + L KE+ I+ S
Sbjct: 570 KVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKIL-SLMKESAINLSA 628
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TYN+L+ ++ RL + E EIK S + P+ ++YN +I Y + ++
Sbjct: 629 ATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSE 688
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
MK + PD TY + ++ Y + E+ ELV++ V
Sbjct: 689 MKCSGLKPDVVTYNIFVKSYVSNS---MFEEAIELVRYMV 725
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 120/349 (34%), Gaps = 69/349 (19%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
I TYN +L Y + K KE ++P TYNTLIS R L
Sbjct: 206 AIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQV 265
Query: 249 FQEIKDSNLSPN-----------------------------------VFTYNYLIAGYMT 273
F E+K S P+ V TYN LI+ Y+
Sbjct: 266 FDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVK 325
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL----------------PRMEK 317
+ + + Q M+ + PD TY L+ G +G + P +
Sbjct: 326 DGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCT 385
Query: 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVY 377
L+K H +FP + A+ I L+ + + N L V
Sbjct: 386 YNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQ-------NGLDSEV- 437
Query: 378 AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC 437
+EM+K+ E T V+ ++SSY RC D KR AG
Sbjct: 438 --SGVFKEMKKA-GYIPERDTYVS-------LISSYSRCGLFDLAMQIYKRMMEAGIYPD 487
Query: 438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
S Y++ + A R E+ E + EME + ++ + +AYA
Sbjct: 488 VSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANA 536
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 114/290 (39%), Gaps = 9/290 (3%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT-AWMW 277
+A P Y L+S F R A F+ + DS + P + TYN ++ Y A W
Sbjct: 165 DAAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPW 224
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+V E+ MK V PD TY L+ ++++ +K + ++
Sbjct: 225 KEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSL 284
Query: 338 ICAYSKCSVTDR-IKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396
+ Y K D I+ I+ + R+ + + LI Y K+ LE+ ++ E
Sbjct: 285 LDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNS--LISSYVKDGLLEQA-VALKQEMEV 341
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA--GWRLCRSLYHSKMVMYASQRRV 454
K V ++S R +D A V+ E G + Y++ + M+ + +
Sbjct: 342 KGIKPDVVTYTTLISGLDRAGKID--AAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKF 399
Query: 455 EEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
EM +V E+ + T+ + + G +V+ V M K GY
Sbjct: 400 PEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGY 449
>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
Length = 796
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 110/446 (24%), Positives = 196/446 (43%), Gaps = 27/446 (6%)
Query: 78 RKDLTQTVSALRDELLANVDDLDKVF--RVLDEKGSCLFRRHSNGYAFVELMKQLGSRPR 135
R+ L + + + DE+ A + DKV +LD G RRH ++ M+ G P
Sbjct: 268 RRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKA--RRHEEAIGVLKKMENAGCTPS 325
Query: 136 LAL---------------EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
+ E L ++ G YT I RI +D A ++
Sbjct: 326 VVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKIDAALATYS 385
Query: 181 EAA-NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
E N + TYNAL+ + G + +F DL+ A P +VT+NTL++VFG+
Sbjct: 386 EMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRS-AGYVPDVVTWNTLLAVFGQN 444
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
L + F+E+K + P TY LI+ Y ++ + EIY+ M + PD +TY
Sbjct: 445 GLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTY 504
Query: 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359
+L A G + EK++ ++ + +++ AY+ D++K AL
Sbjct: 505 NAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMK---ALSED 561
Query: 360 IPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN 417
I + P WL L+ V K + L E EK+ + + S+ + ++ +VS Y +
Sbjct: 562 IYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSL-DINVLNAMVSIYGKNK 620
Query: 418 AVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW 477
V K+ + + + Y+S M MY+ E+ E++L E+++ + + ++
Sbjct: 621 MVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYN 680
Query: 478 IMYYAYATCGQRRKVNQVLGLMCKNG 503
+ YAY GQ ++ +++ M +G
Sbjct: 681 TVIYAYGRKGQMKEASRLFSEMKCSG 706
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 169 INNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ V+ L E + H + TYN+L+ Y G +KC+++ ++K + + P +
Sbjct: 622 VKKVEEVLTLMKENSINH--SAATYNSLMHMYSRLGDCEKCEAILTEIKS-SGMRPDRYS 678
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YNT+I +GR + F E+K S + P++ TYN I Y+ M+ + ++ + +
Sbjct: 679 YNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLV 738
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNL 312
A P+ TY +L GY G +
Sbjct: 739 AQGCKPNERTYNSILEGYCRHGRM 762
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I NA++ Y N + K + + L KE +I+ S TYN+L+ ++ RL + EA
Sbjct: 606 INVLNAMVSIYGKNKMVKKVEEVL-TLMKENSINHSAATYNSLMHMYSRLGDCEKCEAIL 664
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
EIK S + P+ ++YN +I Y + ++ MK V PD TY + ++ Y
Sbjct: 665 TEIKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYV-- 722
Query: 310 GNLPRMEKIYELVKHHV 326
NL E+ +LV++ V
Sbjct: 723 ANL-MFEEAIDLVRYLV 738
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 70/167 (41%), Gaps = 8/167 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN +L Y + K + D KE I TYNTLIS R L F E
Sbjct: 222 TYNVVLHVYSKMSVPWKEVVVLVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDE 281
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K + P+ T+N L+ Y A + + + M+ P TY L+ Y G
Sbjct: 282 MKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGL 341
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-CSVTDRIKKIEALM 357
L E+ EL + EF ++ + Y+ S DRI KI+A +
Sbjct: 342 L---EEALELKQE----MEFRGMKPDVVTYTTLISGLDRIGKIDAAL 381
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 76/197 (38%), Gaps = 42/197 (21%)
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRI 350
PD + Y L+ ++ +G R + + VDG P + ++ YSK SV
Sbjct: 183 PDASAYTALVSEFSRAG---RFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSV---- 235
Query: 351 KKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV 410
PW V+++ KED +E D + + T ++ R
Sbjct: 236 ----------------PWKEVVVLVDSMKEDGIEL------DRYTYNTLISCCR------ 267
Query: 411 SSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID 470
R + A ++AG+ + ++S + +Y RR EE VLK+MEN
Sbjct: 268 ----RRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCT 323
Query: 471 CSKKTFWIMYYAYATCG 487
S T+ + AY G
Sbjct: 324 PSVVTYNSLISAYVKDG 340
>gi|326495232|dbj|BAJ85712.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 89/339 (26%), Positives = 152/339 (44%), Gaps = 10/339 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y K + GR LA DLF E + + T Y AL+GAY NGL D+ L +D+K
Sbjct: 176 YMKLLLLLGRSGQPSLAQDLFTEMQQQGCQPTPELYTALIGAYCRNGLLDEALKLLQDMK 235
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P + TY+ LI F D ++A ++E+ + +++PN T N +++GY A
Sbjct: 236 ANPLCQPDVYTYSILIKAFVDAPRFDLVDAMYKEMAERSVAPNTVTQNIVLSGYCRAGRL 295
Query: 278 GKVEEIYQ-MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336
+E++ M+++ PD T ++L + +SG + MEK YE + + E
Sbjct: 296 DDMEKLLSAMLESANSKPDVWTMNIILSLFGNSGQVELMEKWYEKFRGYGIEPETRTFNI 355
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL---LIRVYAKEDCLEEMEKSINDA 393
+I AY K + D++ + MR + PW +I +A+ + ME + N
Sbjct: 356 LIGAYGKKRMYDKMSAVMEYMRRLA----FPWTTATYNNVIEAFAEAGDAKNMEDTFNQM 411
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
T + C+++ + K+ VK AE S ++S + A
Sbjct: 412 RSEGMKPDT-KTFCCLINGFSNAALFHKVVGMVKLAERLDVPPNTSFHNSVLAACAKAED 470
Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
+ EME V + M++ + + T+ I+ AY G K+
Sbjct: 471 LMEMERVFRHMKHMQCEPDAITYSILLEAYRKEGMTDKM 509
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 100/239 (41%), Gaps = 6/239 (2%)
Query: 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM-PDTNTYLLLLRGYAHSGNLPRMEKIYEL 321
T +A + A W ++++M+K P P TY+ LL SG + ++
Sbjct: 139 TVTEALADRIAAKNWQGALQVFEMLKEQPFYYPKEGTYMKLLLLLGRSGQPSLAQDLFTE 198
Query: 322 VKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED 381
++ L A+I AY + + D K+ M+ P + + +LI+ +
Sbjct: 199 MQQQGCQPTPELYTALIGAYCRNGLLDEALKLLQDMKANPLCQPDVYTYSILIKAFVDAP 258
Query: 382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA-ESAGWRLCRSL 440
+ ++ + E + TV ++S Y R +D + + ESA +
Sbjct: 259 RFDLVDAMYKEMAERSVAPNTV-TQNIVLSGYCRAGRLDDMEKLLSAMLESANSKPDVWT 317
Query: 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
+ + ++ + +VE ME ++ Y I+ +TF I+ AY G++R +++ +M
Sbjct: 318 MNIILSLFGNSGQVELMEKWYEKFRGYGIEPETRTFNILIGAY---GKKRMYDKMSAVM 373
>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
Length = 784
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 111/451 (24%), Positives = 208/451 (46%), Gaps = 37/451 (8%)
Query: 78 RKDLTQTVSALRDELLANVDDLDKVF--RVLDEKGSCLFRRHSNGYAFVELMKQLGSRPR 135
R+ L + + + DE+ A+ + DKV +LD G RRH ++ M+++G P
Sbjct: 255 RRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKA--RRHDEAIEVIQEMERVGCPP- 311
Query: 136 LALEVLNWRRRQAGY--------GTPMTKEEYTKGIK---------FAG--RINNVDLAA 176
V+ + + Y + +E KG+K +G R +D A
Sbjct: 312 ---SVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAI 368
Query: 177 DLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
+ E K + TYNAL+ + G + ++F + + A P IVT+NTL++V
Sbjct: 369 VEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRS-AGFVPDIVTWNTLLAV 427
Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
FG+ L + F+E+K + P TY LI+ Y ++ +IY+ M + PD
Sbjct: 428 FGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPD 487
Query: 296 TNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE 354
+TY +L A G + EK++ E+ + E+ +++ AY+ R+ K++
Sbjct: 488 VSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSY-SSLLHAYANAK---RLDKMK 543
Query: 355 ALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS 412
AL I + P WL L+ V +K + L E EK+ + + + S+ + ++ +VS
Sbjct: 544 ALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSL-DINVLNAMVSI 602
Query: 413 YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS 472
Y + V K+ + + + L + Y+S M MY+ E+ E++L E+++ +
Sbjct: 603 YGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPD 662
Query: 473 KKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ ++ + YAY GQ ++ +++ M +G
Sbjct: 663 RYSYNTVIYAYGRKGQMKEASRLFSEMKCSG 693
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+ TYN+L+ Y G +KC+++ ++K + + P +YNT+I +GR +
Sbjct: 627 SAATYNSLMHMYSRLGDCEKCENILTEIKS-SGVRPDRYSYNTVIYAYGRKGQMKEASRL 685
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F E+K S L P+V TYN + Y++ M+ + E+ + M P+ TY ++ GY
Sbjct: 686 FSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCR 745
Query: 309 SGNL 312
+G L
Sbjct: 746 NGKL 749
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
++NN+ A F E K I NA++ Y N + K + + L KE+ I+ S
Sbjct: 570 KVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKIL-SLMKESAINLSA 628
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TYN+L+ ++ RL + E EIK S + P+ ++YN +I Y + ++
Sbjct: 629 ATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSE 688
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
MK + PD TY + ++ Y + E+ ELV++ V
Sbjct: 689 MKCSGLKPDVVTYNIFVKSYVSNSMF---EEAIELVRYMV 725
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 121/349 (34%), Gaps = 69/349 (19%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
I TYN +L Y + K KE ++P TYNTLIS R L
Sbjct: 206 AIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQV 265
Query: 249 FQEIKDSNLSPN-----------------------------------VFTYNYLIAGYMT 273
F E+K S P+ V TYN LI+ Y+
Sbjct: 266 FDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVK 325
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL----------------PRMEK 317
+ + + Q M+ + PD TY L+ G +G + P +
Sbjct: 326 DGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCT 385
Query: 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVY 377
L+K H +FP + A+ + I L+ + + N L V
Sbjct: 386 YNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQ-------NGLDSEV- 437
Query: 378 AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC 437
+EM+K+ E T V+ ++SSY RC D KR AG
Sbjct: 438 --SGVFKEMKKA-GYIPERDTYVS-------LISSYSRCGLFDLAMQIYKRMMEAGIYPD 487
Query: 438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
S Y++ + A R E+ E + EME + ++ + +AYA
Sbjct: 488 VSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANA 536
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 113/290 (38%), Gaps = 9/290 (3%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT-AWMW 277
+A P Y L+S F R A F+ + DS + P + TYN ++ Y A W
Sbjct: 165 DAAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPW 224
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+V E+ MK V PD TY L+ ++++ +K + ++
Sbjct: 225 KEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSL 284
Query: 338 ICAYSKCSVTDR-IKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396
+ Y K D I+ I+ + R+ + + LI Y K+ LE+ ++ E
Sbjct: 285 LDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNS--LISSYVKDGLLEQA-VALKQEMEV 341
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA--GWRLCRSLYHSKMVMYASQRRV 454
K V ++S R +D A V+ E G + Y++ + M+ + +
Sbjct: 342 KGMKPDVVTYTTLISGLDRAGKID--AAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKF 399
Query: 455 EEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
EM +V E + T+ + + G +V+ V M K GY
Sbjct: 400 PEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGY 449
>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
Length = 766
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 111/451 (24%), Positives = 208/451 (46%), Gaps = 37/451 (8%)
Query: 78 RKDLTQTVSALRDELLANVDDLDKVF--RVLDEKGSCLFRRHSNGYAFVELMKQLGSRPR 135
R+ L + + + DE+ A+ + DKV +LD G RRH ++ M+++G P
Sbjct: 237 RRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKA--RRHDEAIEVIQEMERVGCPP- 293
Query: 136 LALEVLNWRRRQAGY--------GTPMTKEEYTKGIK---------FAG--RINNVDLAA 176
V+ + + Y + +E KG+K +G R +D A
Sbjct: 294 ---SVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAI 350
Query: 177 DLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
+ E K + TYNAL+ + G + ++F + + A P IVT+NTL++V
Sbjct: 351 VEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRS-AGFVPDIVTWNTLLAV 409
Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
FG+ L + F+E+K + P TY LI+ Y ++ +IY+ M + PD
Sbjct: 410 FGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPD 469
Query: 296 TNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE 354
+TY +L A G + EK++ E+ + E+ +++ AY+ R+ K++
Sbjct: 470 VSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSY-SSLLHAYANAK---RLDKMK 525
Query: 355 ALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS 412
AL I + P WL L+ V +K + L E EK+ + + + S+ + ++ +VS
Sbjct: 526 ALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSL-DINVLNAMVSI 584
Query: 413 YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS 472
Y + V K+ + + + L + Y+S M MY+ E+ E++L E+++ +
Sbjct: 585 YGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPD 644
Query: 473 KKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ ++ + YAY GQ ++ +++ M +G
Sbjct: 645 RYSYNTVIYAYGRKGQMKEASRLFSEMKCSG 675
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+ TYN+L+ Y G +KC+++ ++K + + P +YNT+I +GR +
Sbjct: 609 SAATYNSLMHMYSRLGDCEKCENILTEIKS-SGVRPDRYSYNTVIYAYGRKGQMKEASRL 667
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F E+K S L P+V TYN + Y++ M+ + E+ + M P+ TY ++ GY
Sbjct: 668 FSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYCR 727
Query: 309 SGNL 312
+G L
Sbjct: 728 NGKL 731
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
++NN+ A F E K I NA++ Y N + K + + L KE+ I+ S
Sbjct: 552 KVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKIL-SLMKESAINLSA 610
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TYN+L+ ++ RL + E EIK S + P+ ++YN +I Y + ++
Sbjct: 611 ATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSE 670
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
MK + PD TY + ++ Y + E+ ELV++ V
Sbjct: 671 MKCSGLKPDVVTYNIFVKSYVSNSMF---EEAIELVRYMV 707
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 80/349 (22%), Positives = 121/349 (34%), Gaps = 69/349 (19%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
I TYN +L Y + K KE ++P TYNTLIS R L
Sbjct: 188 AIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQV 247
Query: 249 FQEIKDSNLSPN-----------------------------------VFTYNYLIAGYMT 273
F E+K S P+ V TYN LI+ Y+
Sbjct: 248 FDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVK 307
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL----------------PRMEK 317
+ + + Q M+ + PD TY L+ G +G + P +
Sbjct: 308 DGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCT 367
Query: 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVY 377
L+K H +FP + A+ + I L+ + + N L V
Sbjct: 368 YNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQ-------NGLDSEV- 419
Query: 378 AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC 437
+EM+K+ E T V+ ++SSY RC D KR AG
Sbjct: 420 --SGVFKEMKKA-GYIPERDTYVS-------LISSYSRCGLFDLAMQIYKRMMEAGIYPD 469
Query: 438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
S Y++ + A R E+ E + EME + ++ + +AYA
Sbjct: 470 VSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANA 518
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 109/288 (37%), Gaps = 5/288 (1%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT-AWMW 277
+A P Y L+S F R A F+ + DS + P + TYN ++ Y A W
Sbjct: 147 DAAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPW 206
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+V E+ MK V PD TY L+ ++++ +K + ++
Sbjct: 207 KEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSL 266
Query: 338 ICAYSKCSVTDR-IKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396
+ Y K D I+ I+ + R+ + + LI Y K+ LE+ ++ E
Sbjct: 267 LDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNS--LISSYVKDGLLEQA-VALKQEMEV 323
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
K V ++S R +D G + Y++ + M+ + + E
Sbjct: 324 KGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPE 383
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
M +V E + T+ + + G +V+ V M K GY
Sbjct: 384 MMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGY 431
>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 793
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 167/348 (47%), Gaps = 8/348 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I R +D A + E K + TYNAL+ + G + ++F DL+
Sbjct: 357 YTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLR 416
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
A P +VT+NTL++VFG+ L + F+E+K S P TY LI+ Y ++
Sbjct: 417 -SAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLF 475
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL-IRA 336
+ EIY+ M + PD +TY +L A G + EK++ ++ ++D + L +
Sbjct: 476 DQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEME-NLDCRPDELSYSS 534
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEK-EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE 395
++ AY+ D++K + + EK E L L+ V +K + L E EK+ +
Sbjct: 535 LLHAYANAKKLDKMKALSE--DIYAEKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGR 592
Query: 396 HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVE 455
+ S+ + ++ +VS Y + V K+ + + + L + Y+S M MY+ E
Sbjct: 593 RRCSL-DINVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCE 651
Query: 456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ E++L E+++ + ++ M YAY GQ ++ +++ M +G
Sbjct: 652 KCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSG 699
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 128/312 (41%), Gaps = 37/312 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ L + +F +++ A P VT+N+L+ V+G+ + D +E
Sbjct: 251 TYNTLISCCRRGALYKEAAKVFDEMRA-AGFEPDKVTFNSLLDVYGKARMHDEAIGVLKE 309
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ P+V TYN LI+ Y+ + + E+ + M+ + PD TY L+ G +G
Sbjct: 310 MELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGK 369
Query: 312 L----------------PRMEKIYELVK-HHVDGKEFPLIRAMICAYSKCSVTDRIKKIE 354
+ P + L+K H V GK FP + A+ +
Sbjct: 370 IDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGK-FPEMMAVFDDLRSAGFVPDVVTWN 428
Query: 355 ALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF 414
L+ + + N L V +EM+KS E T V+ ++SSY
Sbjct: 429 TLLAVFGQ-------NGLDSEV---SGVFKEMKKS-GYVPERDTYVS-------LISSYS 470
Query: 415 RCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKK 474
RC D+ KR AG S Y++ + A R E+ E + EMEN +
Sbjct: 471 RCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDEL 530
Query: 475 TFWIMYYAYATC 486
++ + +AYA
Sbjct: 531 SYSSLLHAYANA 542
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+ TYN+L+ Y G +KC+++ ++K + P +YNT+I +GR +
Sbjct: 633 STATYNSLMHMYSRLGDCEKCENILTEIK-SSGARPDRYSYNTMIYAYGRKGQMKEASRL 691
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F E+K S L P++ TYN + Y+ M+ + ++ + M P+ TY +L+ Y
Sbjct: 692 FSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCR 751
Query: 309 SGNL 312
G +
Sbjct: 752 HGKI 755
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
++NN+ F E + I NA++ Y N + K + + L K ++I+ S
Sbjct: 576 KVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKKVEEIL-SLMKGSSINLST 634
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TYN+L+ ++ RL + E EIK S P+ ++YN +I Y + ++
Sbjct: 635 ATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSE 694
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
MK+ ++PD TY + ++ Y + E+ +LV++ V
Sbjct: 695 MKSSGLIPDIVTYNIFVKSYVANS---MFEEAIDLVRYMV 731
>gi|224081220|ref|XP_002306340.1| predicted protein [Populus trichocarpa]
gi|222855789|gb|EEE93336.1| predicted protein [Populus trichocarpa]
Length = 416
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 167/364 (45%), Gaps = 23/364 (6%)
Query: 126 LMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA 183
L ++LG + LEV W ++Q Y Y+K I G+ +A LF+E
Sbjct: 59 LFEELGKTDKWLQCLEVFRWMQKQRWYVA--DNGCYSKLISVMGKKGQTRMAMWLFSEMR 116
Query: 184 NKHLK-TIGTYNALLGAYMYNGLSDKCQSL------FRDLKKEANISPSIVTYNTLISVF 236
N + YNAL+ A++++ DK +SL F +K P++VTYN ++ F
Sbjct: 117 NSGCRPDTSVYNALITAHLHS--KDKAKSLTKALAYFEKMKSIERCQPNVVTYNIILRAF 174
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
+ V+ + A F+++++S +SP+++TYN ++ Y M ++E + MK PD
Sbjct: 175 AQARNVNQVNALFKDLEESIVSPDIYTYNGVLDAYGKNGMIREMESVLSRMKIDQCKPDI 234
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
T+ LL+ Y + +ME++++ + + P +MI Y K + D K E++
Sbjct: 235 ITFNLLIDSYGKKQDFEKMEQVFKSLLRSKEKPTLPTFNSMIVNYGKARLKD---KAESV 291
Query: 357 MRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF 414
+ + + Y P LI +Y DC+ + +D E V V + +++ Y
Sbjct: 292 FKKMADMRYTPSFITFESLIMMYGICDCVSKARDIFDDMVESGKEV-KVSTLNAVLNVY- 349
Query: 415 RC-NAVDKLAN-FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS 472
C N + A+ ++ A S G S Y Y + E ++ +LK M+ I +
Sbjct: 350 -CMNGLHMEAHILLENARSIGVPPNSSTYKLLYRAYTKAKMKELVQKLLKHMDKDGIIPN 408
Query: 473 KKTF 476
K+ F
Sbjct: 409 KRFF 412
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 73/338 (21%), Positives = 140/338 (41%), Gaps = 50/338 (14%)
Query: 184 NKHLKTIGTYNALLGAYMYNGLSDK---CQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
NK++K + T + + + G +DK C +FR ++K+ Y+ LISV G+
Sbjct: 45 NKYVKVMRTEHCFM-LFEELGKTDKWLQCLEVFRWMQKQRWYVADNGCYSKLISVMGKKG 103
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM----TAWMWGKVEEIYQMMKA-GPVMPD 295
F E+++S P+ YN LI ++ A K ++ MK+ P+
Sbjct: 104 QTRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKSLTKALAYFEKMKSIERCQPN 163
Query: 296 TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA 355
TY ++LR +A + N+ ++ +++ ++ + + ++ AY K + I+++E+
Sbjct: 164 VVTYNIILRAFAQARNVNQVNALFKDLEESIVSPDIYTYNGVLDAYGKNGM---IREMES 220
Query: 356 LMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY 413
++ + + +P + LLI Y K+ E+ME+ + S
Sbjct: 221 VLSRMKIDQCKPDIITFNLLIDSYGKKQDFEKMEQ--------------------VFKSL 260
Query: 414 FRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSK 473
R L F +S +V Y R ++ ESV K+M + + S
Sbjct: 261 LRSKEKPTLPTF----------------NSMIVNYGKARLKDKAESVFKKMADMRYTPSF 304
Query: 474 KTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
TF + Y C K + M ++G +V V+
Sbjct: 305 ITFESLIMMYGICDCVSKARDIFDDMVESGKEVKVSTL 342
>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Brachypodium distachyon]
Length = 791
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 109/450 (24%), Positives = 207/450 (46%), Gaps = 35/450 (7%)
Query: 78 RKDLTQTVSALRDELLANVDDLDKVF--RVLDEKGSCLFRRHSNGYAFVELMKQLGSRPR 135
R+ L + + + DE+ A + DKV +LD G RR+ ++ M+Q G P
Sbjct: 259 RRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYGKA--RRYDEAIGVLKEMEQGGCPP- 315
Query: 136 LALEVLNWRRRQAGY--------GTPMTKEEYTKGIK---------FAG--RINNVDLAA 176
V+ + + Y T + +E KGI+ +G R +D A
Sbjct: 316 ---SVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAI 372
Query: 177 DLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
+ E K + TYNAL+ + G + +F +++ A P +VT+NTL++V
Sbjct: 373 GTYNEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRS-AGFVPDVVTWNTLLAV 431
Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
FG+ L + F+E+K S P TY LI+ Y ++ + EIY+ M + PD
Sbjct: 432 FGQNGLDTEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIHPD 491
Query: 296 TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL-IRAMICAYSKCSVTDRIKKIE 354
+TY +L A G + EK++ ++ ++D + L +++ AY+ D++K +
Sbjct: 492 ISTYNAVLSALARGGRWEQAEKLFAEME-NLDSRPDELSYSSLLHAYANAKKLDKMKSLS 550
Query: 355 ALMRLIPEK-EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY 413
+ E+ E L L+ V +K + L + EK+ + + S+ + ++ ++S Y
Sbjct: 551 E--DIYAERIESHNGLVKTLVLVNSKVNNLSDTEKAFLELRRRRCSL-DINVLNAMISIY 607
Query: 414 FRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSK 473
+ V K+ + + + L + Y+S M MY+ E+ E++L E+++ + +
Sbjct: 608 GKNGMVKKVEEILSLMKESSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDR 667
Query: 474 KTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
++ M YAY GQ ++ +++ M +G
Sbjct: 668 YSYNTMIYAYGRKGQMKEASRLFSEMKCSG 697
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 5/160 (3%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
++NN+ F E + I NA++ Y NG+ K + + L KE++I+ S
Sbjct: 574 KVNNLSDTEKAFLELRRRRCSLDINVLNAMISIYGKNGMVKKVEEIL-SLMKESSINLST 632
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TYN+L+ ++ RL + E EIK S P+ ++YN +I Y + ++
Sbjct: 633 ATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKEASRLFSE 692
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
MK ++PD TY + ++ Y + E+ +LV++ V
Sbjct: 693 MKCSGLVPDIVTYNIFVKSYVANS---MFEEAIDLVRYMV 729
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 14/143 (9%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+ TYN+L+ Y G +KC+++ ++K + P +YNT+I +GR +
Sbjct: 631 STATYNSLMHMYSRLGDCEKCENILTEIKS-SRARPDRYSYNTMIYAYGRKGQMKEASRL 689
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F E+K S L P++ TYN + Y+ M+ + ++ + M P+ TY +L+ Y
Sbjct: 690 FSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGCKPNERTYNTILQEYCS 749
Query: 309 SGNLPRMEKIYELVKHHVDGKEF 331
G + DGK F
Sbjct: 750 HGRI-------------ADGKSF 759
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 78/362 (21%), Positives = 134/362 (37%), Gaps = 65/362 (17%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS-------- 234
AN + TYN +L Y + K D ++ I TYNTLIS
Sbjct: 204 ANGVCPALVTYNVVLHVYSKIAVPWKEVLALVDSMRKDGIPLDRYTYNTLISCCRRRALY 263
Query: 235 ---------------------------VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
V+G+ D +E++ P+V TYN L
Sbjct: 264 KEAAKVFDEMRAAGFEPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSL 323
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHV 326
I+ Y+ + + ++ + M+ + PD TY L+ G +G + Y E++++
Sbjct: 324 ISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRNGC 383
Query: 327 DGKEFPLIRAMICAYSKC----SVTDRIKKIEALMRLIPEKEYRP----WLNVLLIRVYA 378
+ +C Y+ V + ++ + I + P W +L +
Sbjct: 384 --------KPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLLAVFGQN 435
Query: 379 KED-----CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
D +EM+KS E T V+ ++SSY RC D+ KR AG
Sbjct: 436 GLDTEVSGVFKEMKKS-GYVPERDTYVS-------LISSYSRCGLFDQAMEIYKRMIEAG 487
Query: 434 WRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVN 493
S Y++ + A R E+ E + EMEN + ++ + +AYA + K+
Sbjct: 488 IHPDISTYNAVLSALARGGRWEQAEKLFAEMENLDSRPDELSYSSLLHAYANAKKLDKMK 547
Query: 494 QV 495
+
Sbjct: 548 SL 549
>gi|357157771|ref|XP_003577908.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Brachypodium distachyon]
Length = 512
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 95/362 (26%), Positives = 158/362 (43%), Gaps = 14/362 (3%)
Query: 137 ALEVLNWRRRQAGYGTPMTKE-EYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYN 194
AL+V + Q Y KE Y K + GR LA LFA+ + + T Y
Sbjct: 141 ALQVFEMLKEQPFY---YPKEGTYMKLLLLLGRSGQPALAHRLFADMQQQGCQPTPELYT 197
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
AL+ AY +GL D L D+K P + TY+TLI D ++A ++E+ +
Sbjct: 198 ALIAAYCRSGLLDDALRLLGDMKAAPLCQPDVYTYSTLIKALVDASRFDLVDAMYKEMAE 257
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ-MMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
++PN T N +++GY A +E++ M+ + PD T ++L + +SG +
Sbjct: 258 RGVAPNTVTQNIVLSGYGRAGRMDDMEKLLSAMLDSTASKPDVWTMNIILSLFGNSGQVD 317
Query: 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL- 372
MEK YE + + E + +I AY K + D++ + MR K PW
Sbjct: 318 LMEKWYEKFRGYGIEPETRTLNILIGAYGKKRMYDKMSAVMEFMR----KLAFPWTTSTY 373
Query: 373 --LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
+I +A+ + ME++ N T + C+++ + + K+ VK AE
Sbjct: 374 NNVIEAFAEAGDEKNMEQTFNQMRSEGMKPDT-KTFCCLINGFSKAGLFHKVVGMVKLAE 432
Query: 431 SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRR 490
S ++S + A + EME V + M++ + T+ I+ AY G
Sbjct: 433 RLDVPANTSFHNSVLAACARAGDLVEMERVFRHMKHVQCAPDATTYSILVEAYRKEGMTD 492
Query: 491 KV 492
KV
Sbjct: 493 KV 494
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 1/163 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T N L+GAY + DK ++ ++K A + TYN +I F +ME F +
Sbjct: 337 TLNILIGAYGKKRMYDKMSAVMEFMRKLA-FPWTTSTYNNVIEAFAEAGDEKNMEQTFNQ 395
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + P+ T+ LI G+ A ++ KV + ++ + V +T+ + +L A +G+
Sbjct: 396 MRSEGMKPDTKTFCCLINGFSKAGLFHKVVGMVKLAERLDVPANTSFHNSVLAACARAGD 455
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE 354
L ME+++ +KH + ++ AY K +TD++ ++
Sbjct: 456 LVEMERVFRHMKHVQCAPDATTYSILVEAYRKEGMTDKVYDLQ 498
>gi|242047208|ref|XP_002461350.1| hypothetical protein SORBIDRAFT_02g001400 [Sorghum bicolor]
gi|241924727|gb|EER97871.1| hypothetical protein SORBIDRAFT_02g001400 [Sorghum bicolor]
Length = 560
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 156/361 (43%), Gaps = 12/361 (3%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
AL+V + Q Y + + K I GR A LF E + + T G Y A
Sbjct: 189 ALQVFEMLKEQPFYHP--KEGTFMKLIVLLGRSGQPARAHQLFDEMLQQGCQPTPGLYTA 246
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+GAY +GL D L D+K P + TY+T+I D ++ ++++ +
Sbjct: 247 LIGAYCRSGLLDDALQLLNDMKGSPLCQPDVYTYSTIIKACVDATRFDLIDVMYKDMAER 306
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+++PN T N +++GY A +E++ M+ + PD T ++L + + G +
Sbjct: 307 SIAPNTVTQNIVLSGYGKAGRLDDMEKVLSDMLDSTACKPDVWTMNIILSLFGNKGQVEL 366
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL-- 372
MEK YE + + E + +I AY K + D++ + MR K PW
Sbjct: 367 MEKWYEKFRSYGIEPETRTLNILIGAYGKKRMYDKMSAVMEYMR----KLAFPWTTATYN 422
Query: 373 -LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
+I +A+ + ME + N T + C+++ + + K+ VK AE
Sbjct: 423 NVIEAFAEAGDAKNMEHTFNQMRSEGMKPDT-KTFCCLINGFSKAGQFHKVVGMVKLAER 481
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
S +++ + A + EME V + M++ + D T+ I+ AY G K
Sbjct: 482 LDVPANTSFHNAILGACARADDLMEMERVFRHMKHTQCDPDAVTYSILVEAYRKEGMTDK 541
Query: 492 V 492
+
Sbjct: 542 I 542
>gi|356552149|ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Glycine max]
Length = 481
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/372 (24%), Positives = 168/372 (45%), Gaps = 12/372 (3%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIG 191
R ALE+ R+Q Y P + Y K + G+ + A+ LF ++ LK T+
Sbjct: 103 RSHSALEIFALLRKQYWY-QPRCRT-YAKLLMMLGKCRQPEEASLLFEIMLSEGLKPTVD 160
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y AL+ AY +GL D+ S D+K + P + TY+ LI + D +E E
Sbjct: 161 VYTALVSAYGQSGLLDQAFSTVEDMKSVVDCEPDVYTYSILIRCCAKFRRFDLIEHVLAE 220
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + N TYN +I GY A M+ ++++ + M++ G PD T + Y ++G
Sbjct: 221 MSYLGIKCNCVTYNSIIDGYGKASMFEQMDDALNDMIENGNSHPDVFTLNSFVGAYGNAG 280
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+ +MEK Y+ + + MI +Y K + +++K + M + ++ + P +
Sbjct: 281 QIDKMEKWYDEFQLMGIKPDITTFNTMIKSYGKAGMYEKMKTV---MDFMEKRFFTPTIV 337
Query: 371 V--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC-IVSSYFRCNAVDKLANFVK 427
+I V+ K +E+M++ +H V I C +VS+Y + +DK+ + ++
Sbjct: 338 TYNTVIEVFGKAGEIEKMDQHFL-KMKH-LGVKPNSITYCSLVSAYSKVGCIDKVDSIMR 395
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
E++ L ++ + Y +++M + M K + TF M +Y T G
Sbjct: 396 HVENSDVVLDTPFFNCIISAYGQAGNLKKMGELFLAMRERKCEPDNITFACMIQSYNTQG 455
Query: 488 QRRKVNQVLGLM 499
V + +M
Sbjct: 456 MTEAVQNLENMM 467
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 124/281 (44%), Gaps = 12/281 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I+ + DL + AE + +K TYN+++ Y + ++ D+
Sbjct: 198 YSILIRCCAKFRRFDLIEHVLAEMSYLGIKCNCVTYNSIIDGYGKASMFEQMDDALNDMI 257
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ N P + T N+ + +G +D ME + E + + P++ T+N +I Y A M+
Sbjct: 258 ENGNSHPDVFTLNSFVGAYGNAGQIDKMEKWYDEFQLMGIKPDITTFNTMIKSYGKAGMY 317
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
K++ + M+ P TY ++ + +G + +M++ + +KH ++
Sbjct: 318 EKMKTVMDFMEKRFFTPTIVTYNTVIEVFGKAGEIEKMDQHFLKMKHLGVKPNSITYCSL 377
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEY---RPWLNVLLIRVYAKEDCLEEMEKSINDAF 394
+ AYSK D K++++MR + + P+ N +I Y + L++M +
Sbjct: 378 VSAYSKVGCID---KVDSIMRHVENSDVVLDTPFFNC-IISAYGQAGNLKKMGELFLAMR 433
Query: 395 EHKTSVTTVRIMRCIVSSY---FRCNAVDKLANFVKRAESA 432
E K + C++ SY AV L N + A+S+
Sbjct: 434 ERKCEPDNI-TFACMIQSYNTQGMTEAVQNLENMMISAKSS 473
>gi|334188265|ref|NP_199684.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635750|sp|Q9FKC3.2|PP424_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g48730, chloroplastic; Flags: Precursor
gi|332008334|gb|AED95717.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 508
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 116/474 (24%), Positives = 198/474 (41%), Gaps = 44/474 (9%)
Query: 63 VRLLSETLTYPDARVRKDLTQTVS-ALRD----ELLANVDDL----------DKVFRVLD 107
VR +S + P+ + D + S +LR+ + L N +D+ DK ++
Sbjct: 27 VRCISISPREPNYAITSDKSNNTSLSLRETRQSKWLINAEDVNERDSKEIKEDKNTKIAS 86
Query: 108 EKGSCLFRRHSNGYAFVELMKQLGSR---PRLALEVLNWRRRQAGYGTPMTKEE------ 158
K + R + +E K+ GS+ PR LE L+ R + + + E
Sbjct: 87 RKAISIILRREATKSIIE--KKKGSKKLLPRTVLESLHERITALRWESAIQVFELLREQL 144
Query: 159 --------YTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKC 209
Y K I G+ + A +LF E N+ + Y AL+ AY +G D
Sbjct: 145 WYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAA 204
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+L +K N P + TY+ LI F ++ D ++ +++ + PN TYN LI
Sbjct: 205 FTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLID 264
Query: 270 GYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
Y A M+ ++E + QM+ PD+ T LR + +G + ME YE K G
Sbjct: 265 AYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYE--KFQSSG 322
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV---LLIRVYAKEDCLEE 385
E P IR + KK+ A+M + + Y W V ++I + + L++
Sbjct: 323 IE-PNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHY-SWTIVTYNVVIDAFGRAGDLKQ 380
Query: 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445
ME + + V + +V +Y R + DK+ ++ E++ RL ++ +
Sbjct: 381 MEYLFRLMQSERIFPSCVTLC-SLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLV 439
Query: 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
Y + EM+ VL+ ME K T+ M AY G V ++ G++
Sbjct: 440 DAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVV 493
>gi|326522967|dbj|BAJ88529.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 539
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/312 (25%), Positives = 149/312 (47%), Gaps = 23/312 (7%)
Query: 100 DKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLA--LEVLNWRRRQAGYGTPMTKE 157
D++ VLD + H F+ L ++LG R LE+ W ++Q Y
Sbjct: 71 DRLVSVLDRHVKVVRTEH----CFL-LFEELGRRDGWVQCLEIFRWMQKQRWYVA--DNG 123
Query: 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL---- 212
Y+K I GR + +A LF++ N K YN+L+GA++++ DK ++L
Sbjct: 124 IYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHS--RDKSKALVKAL 181
Query: 213 --FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
F +K P+IVTYN L+ R ++ F+++ +S +SP+++TYN +I G
Sbjct: 182 GYFDKMKGMERCQPNIVTYNILLRACARASDTKQVDILFKDLDESIVSPDIYTYNGVIDG 241
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
Y M ++E + MK+ PD T+ +L+ Y +ME++++ + +
Sbjct: 242 YGKNGMITEMESVLVRMKSKQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPT 301
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEK 388
P +MI Y K + + K E+++ + E ++P LI +YA DC+ + ++
Sbjct: 302 HPTFNSMITNYGKARLRE---KAESVIEKMQELGFKPNYVTQECLINMYAYCDCVSKAQQ 358
Query: 389 SINDAFEHKTSV 400
++ +++V
Sbjct: 359 IFDELVSSQSTV 370
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/378 (21%), Positives = 150/378 (39%), Gaps = 52/378 (13%)
Query: 144 RRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYN 203
RR AG G + ++F R D D ++H+K + T + L +
Sbjct: 40 RRAGAGDGEADPAAGAAELVRFFLR--RTDGGKDRLVSVLDRHVKVVRTEHCFL-LFEEL 96
Query: 204 GLSD---KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN 260
G D +C +FR ++K+ Y+ LISV GR + F ++++S P+
Sbjct: 97 GRRDGWVQCLEIFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPD 156
Query: 261 VFTYNYLIAGYMTAWMWGK--VEEI--YQMMKAGP-VMPDTNTYLLLLRGYAHSGNLPRM 315
YN LI ++ + K V+ + + MK P+ TY +LLR A + + ++
Sbjct: 157 TSVYNSLIGAHLHSRDKSKALVKALGYFDKMKGMERCQPNIVTYNILLRACARASDTKQV 216
Query: 316 EKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIR 375
+ +++ + + + +I Y K + I ++E+++ + K+ RP
Sbjct: 217 DILFKDLDESIVSPDIYTYNGVIDGYGKNGM---ITEMESVLVRMKSKQCRP-------- 265
Query: 376 VYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR 435
V T I+ + SY R DK+ K + R
Sbjct: 266 -----------------------DVITFNIL---IDSYGRKQTFDKMEQVFKSLLRSKER 299
Query: 436 LCRSLYHSKMVMYASQRRVEEMESVLKEME--NYKIDCSKKTFWIMYYAYATCGQRRKVN 493
++S + Y R E+ ESV+++M+ +K + + I YAY C K
Sbjct: 300 PTHPTFNSMITNYGKARLREKAESVIEKMQELGFKPNYVTQECLINMYAYCDCVS--KAQ 357
Query: 494 QVLGLMCKNGYDVPVNAF 511
Q+ + + VP+++
Sbjct: 358 QIFDELVSSQSTVPLSSL 375
>gi|255556562|ref|XP_002519315.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541630|gb|EEF43179.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/361 (25%), Positives = 156/361 (43%), Gaps = 12/361 (3%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
ALEV + Q Y + Y K + GR A LF E + ++ T Y A
Sbjct: 113 ALEVFEMLKEQPFYHP--KEGTYMKLLVLLGRTGQPQRAHQLFDEMVEEGIEPTAELYTA 170
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
LL AY N L+D+ S+ + +K P + TY+TL+ + +EA +QE+ +
Sbjct: 171 LLAAYCRNHLTDEAFSILQQMKTLPRCLPDVYTYSTLLKACVDASRFELVEALYQEMGER 230
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ-MMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
++PN T N +++GY A M+ ++E + M+++ PD T ++L + + G +
Sbjct: 231 LITPNTVTQNIVLSGYGKAGMYDQMERVLSGMLESTECKPDVWTMNIILSVFGNKGQIDL 290
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL-- 372
MEK YE + E +I AY K + D++ + MR K PW
Sbjct: 291 MEKWYEKFRSFGIEPETRTFNILIGAYGKKRMYDKMSSVMEFMR----KLQFPWTTSTYN 346
Query: 373 -LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
+I +A ++ ME + D + + C+++ Y K+ + V+ A
Sbjct: 347 NVIEAFAVAGDVKHMEYTF-DQMRAEGMKADTKTFCCLINGYANAGLFHKVISSVQLATK 405
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
+ Y++ + A + EME V K M++ + T+ IM AY G K
Sbjct: 406 FEIPENTTFYNAIISACAKAEDLMEMERVFKRMKDNQCQPDSTTYSIMVEAYKREGMNDK 465
Query: 492 V 492
V
Sbjct: 466 V 466
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 124/301 (41%), Gaps = 8/301 (2%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F LK++ P TY L+ + GR F E+ + + P Y L+A Y
Sbjct: 116 VFEMLKEQPFYHPKEGTYMKLLVLLGRTGQPQRAHQLFDEMVEEGIEPTAELYTALLAAY 175
Query: 272 MTAWMWGKVEEIYQMMKAGP-VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+ + I Q MK P +PD TY LL+ + +E +Y+ + +
Sbjct: 176 CRNHLTDEAFSILQQMKTLPRCLPDVYTYSTLLKACVDASRFELVEALYQEMGERLITPN 235
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEK 388
++ Y K + D+++++ L ++ E +P W +++ V+ + ++ MEK
Sbjct: 236 TVTQNIVLSGYGKAGMYDQMERV--LSGMLESTECKPDVWTMNIILSVFGNKGQIDLMEK 293
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
+ F R ++ +Y + DK+++ ++ + S Y++ + +
Sbjct: 294 WY-EKFRSFGIEPETRTFNILIGAYGKKRMYDKMSSVMEFMRKLQFPWTTSTYNNVIEAF 352
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV 508
A V+ ME +M + KTF + YA G KV + L K +++P
Sbjct: 353 AVAGDVKHMEYTFDQMRAEGMKADTKTFCCLINGYANAGLFHKVISSVQLATK--FEIPE 410
Query: 509 N 509
N
Sbjct: 411 N 411
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 77/163 (47%), Gaps = 1/163 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N L+GAY + DK S+ ++K + TYN +I F V HME F +
Sbjct: 309 TFNILIGAYGKKRMYDKMSSVMEFMRK-LQFPWTTSTYNNVIEAFAVAGDVKHMEYTFDQ 367
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + + T+ LI GY A ++ KV Q+ + +T Y ++ A + +
Sbjct: 368 MRAEGMKADTKTFCCLINGYANAGLFHKVISSVQLATKFEIPENTTFYNAIISACAKAED 427
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE 354
L ME++++ +K + + M+ AY + + D++ +E
Sbjct: 428 LMEMERVFKRMKDNQCQPDSTTYSIMVEAYKREGMNDKVYYLE 470
>gi|357519615|ref|XP_003630096.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524118|gb|AET04572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 635
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 162/362 (44%), Gaps = 19/362 (5%)
Query: 126 LMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA 183
L ++LG + LEV W +RQ Y Y+K I G+ + LA LF+E
Sbjct: 87 LFEELGKHDKWLQCLEVFRWMQRQRWYIA--DNGVYSKLISVMGKKGQIRLAMWLFSEMR 144
Query: 184 NKHLK-TIGTYNALLGAYMYNGLSDKCQSL------FRDLKKEANISPSIVTYNTLISVF 236
N + YN+L+ A++++ DK ++L F +K P+IVTYN L+ F
Sbjct: 145 NTGCRPDTSVYNSLISAHLHS--RDKSKALVKALGYFEKMKTTERCKPNIVTYNILLRAF 202
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
+ V+ + F+++ +S++SP+++T+N ++ GY M ++E + MK+ V D
Sbjct: 203 AQARDVNQVNYLFKDLDESSVSPDIYTFNGVMDGYGKNGMIREMESVLVRMKSNQVKLDL 262
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
TY LL+ Y +ME++++ + + P +MI Y K + D K E +
Sbjct: 263 ITYNLLIDSYGKKQQFDKMEQVFKSLSRSKEKPTLPTFNSMILNYGKARLKD---KAENV 319
Query: 357 MRLIPEKEYRPWL--NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF 414
+ + + Y P + LI +Y C+ + + E K + V + ++ Y
Sbjct: 320 FQNMTDMGYTPSFVTHESLIHMYGLCGCVSNAVELFDQLIESKVPI-KVSTLNAMLDVYC 378
Query: 415 RCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKK 474
+ + RA+S + Y Y E ++ +LK+M+ + +K+
Sbjct: 379 INGLQQEADSLFTRAKSIKIFPDATTYKLLYKAYTKANSKELLDKLLKQMDKDSVIPNKR 438
Query: 475 TF 476
F
Sbjct: 439 FF 440
>gi|224092342|ref|XP_002309567.1| predicted protein [Populus trichocarpa]
gi|222855543|gb|EEE93090.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 96/375 (25%), Positives = 177/375 (47%), Gaps = 15/375 (4%)
Query: 101 KVFRVLDEKGSCLFRRHSNGYAFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEY 159
K+ LD S F S+ ++ L+ L S P A VL WR + + +EY
Sbjct: 56 KIIITLDSDHS--FNLKSSQLSWDPLITNLRSSSPEKAHLVLEWRLGRMLDDNEIDHDEY 113
Query: 160 TKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218
+ I G+I NV LA +FA + +K T +N+LL A + + SLF ++
Sbjct: 114 SSLISLCGKIQNVSLAMHVFASMEARGIKPTTSVFNSLLYACLLSSNVITALSLFEIMEN 173
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
+ P+ TY+ ++ F L V+ M+A F + + S ++ Y LI+G + A +
Sbjct: 174 SESYKPNSETYDKFVAGFSNLRDVNKMQAWFVGKRAAGFSASLQNYECLISGCVKARDFD 233
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV---KHHVDGKEFPLIR 335
+ +Y+ M + +MP + +L G+ G+ ++++ + K ++G +I
Sbjct: 234 TADRLYEEMMSLGIMPSLHIMEWVLEGHCKRGSCDKVKEFLNFLLECKFEINGN---MIE 290
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPE-KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAF 394
++ YS+ D ++ + ++ + E L+ +IR YA D L+++E S+
Sbjct: 291 NVVRLYSELGKVDEMEMLLEMLMEFNQVGEALLQLHCGIIRFYAMLDKLDDVEFSVGRMM 350
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454
S + + ++SSYFR A ++L F++ +S ++L RS Y ++ A RRV
Sbjct: 351 SQGMSFKSPSDVEKVISSYFRQEAYERLDLFLEHIKSY-YKLTRSTYD---LLVAGYRRV 406
Query: 455 EEMESVLKEMENYKI 469
ME + ME+ K+
Sbjct: 407 GLMEKLNLLMEDMKL 421
>gi|356511125|ref|XP_003524280.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Glycine max]
Length = 503
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 89/383 (23%), Positives = 165/383 (43%), Gaps = 53/383 (13%)
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNAL 196
LEV W ++Q Y Y+K I G+ +A LF+E N + YNAL
Sbjct: 93 LEVFRWMQKQRWY--IADNGIYSKLISVMGKKGQTRMAMWLFSEMRNTGCRPDTSVYNAL 150
Query: 197 LGAYMYNGLSDKCQSL------FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
+ A++++ DK ++L F+ +K P+IVTYN L+ F + V+ + + F+
Sbjct: 151 ITAHLHS--RDKTKALAKAIGYFQKMKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFK 208
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
++ +S +SP+++T+N ++ Y M ++E + MK+ PD T+ LL+ Y
Sbjct: 209 DLDESIVSPDIYTFNGVMDAYGKNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQ 268
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL- 369
+ME++++ + + P +MI Y K + D K E + + + + Y P
Sbjct: 269 EFGKMEQVFKSLLRSKERASLPTFNSMILNYGKARLKD---KAEDVFKRMTDMGYTPSFV 325
Query: 370 -NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+ LI +Y DC+ + ++ E K +
Sbjct: 326 THESLIYMYGFCDCVSRAAQLFDELVESKAHIKV-------------------------- 359
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
S ++ + +Y +E +S+ + + KI TF ++Y AY Q
Sbjct: 360 ----------STLNAMLDVYCINGLPQEADSLFERANSIKIYPDSSTFKLLYKAYTKANQ 409
Query: 489 RRKVNQVLGLMCKNGYDVPVNAF 511
+ ++++L M K+G VP F
Sbjct: 410 KELLDKLLKHMDKDGI-VPNKRF 431
>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 149/317 (47%), Gaps = 9/317 (2%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I T+N LL + NG+ + +F+++K+ A P T+NTLIS + R D A +
Sbjct: 466 IVTWNTLLAVFGQNGMDSEVSGVFKEMKR-AGFVPERDTFNTLISAYSRCGFFDQAMAIY 524
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + D+ ++P++ TYN ++A +W + E++ MK G P+ TY LL YA+
Sbjct: 525 RRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANG 584
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
+ RM + E + + + L++ ++ YSK +D + + E + E+ + P +
Sbjct: 585 KEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSK---SDLLTETERAFLELREQGFSPDI 641
Query: 370 NVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVRIMRCIVSSYFRCNAVDKLANFV 426
L ++ +Y + + + + +N F + T ++ ++ Y R +K + +
Sbjct: 642 TTLNAMVSIYGRRRMVSKTNEILN--FIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDIL 699
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
+ + G + +++ + Y R++E + EM+++ + T+ +YA+
Sbjct: 700 REIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASD 759
Query: 487 GQRRKVNQVLGLMCKNG 503
+ V+ M KNG
Sbjct: 760 SMFIEAIDVVKYMIKNG 776
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 101/413 (24%), Positives = 177/413 (42%), Gaps = 54/413 (13%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIG 191
RPR A+EVL +G+ + Y I R +D A +L ++ K +K +
Sbjct: 341 RPREAMEVLK-EMEASGFAPSIVT--YNSLISAYARDGLLDEAMELKSQMVKKGIKPDVF 397
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKK---EANIS------------------------- 223
TY LL + G D +F +++ + NI
Sbjct: 398 TYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEI 457
Query: 224 ------PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P IVT+NTL++VFG+ + + F+E+K + P T+N LI+ Y +
Sbjct: 458 KICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFF 517
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP---LI 334
+ IY+ M V PD +TY +L A G + EK+ +K DG+ P
Sbjct: 518 DQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMK---DGRCKPNELTY 574
Query: 335 RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSIND 392
+++ AY+ ++++ AL I P +L L+ VY+K D L E E++ +
Sbjct: 575 CSLLHAYANGK---EVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLE 631
Query: 393 AFEHKTS--VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450
E S +TT+ M I + +++ NF+K +G+ + Y+S M MY+
Sbjct: 632 LREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIK---DSGFTPSLTTYNSLMYMYSR 688
Query: 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
E+ E +L+E+ + +F + +AY G+ ++ +++ M G
Sbjct: 689 TEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFG 741
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 95/408 (23%), Positives = 177/408 (43%), Gaps = 42/408 (10%)
Query: 106 LDEKGSCLFRRHSNGYAFVE---------LMKQLG--SRPRLALEVLNWRRRQAGYGTPM 154
LDE LF S+G F ++K L + LAL V + R + + + +
Sbjct: 124 LDEILLQLFETSSDGLNFTSDSVSFDILGIIKGLVFYKKNELALCVFYFVRNREDFASIL 183
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLF 213
+ I G+ AA L + N + I Y +L+ AY NG + +F
Sbjct: 184 SNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVF 243
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLV-DHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
+ L++E P+++TYN +++V+G++ + + +K S ++P+++TYN LI+
Sbjct: 244 KKLEEEG-CRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCR 302
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
++ + E+++ MKA PD TY LL Y S R + E++K P
Sbjct: 303 RGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKS---RRPREAMEVLKEMEASGFAP 359
Query: 333 LI---RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKS 389
I ++I AY++ + D ++++ M +K +P V+ L EK+
Sbjct: 360 SIVTYNSLISAYARDGLLDEAMELKSQM---VKKGIKP-------DVFTYTTLLSGFEKT 409
Query: 390 INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL----ANFVKRAES-AGWRLCRSL---- 440
D + K +R+ C + NA+ K+ NFV+ + ++C +
Sbjct: 410 GKDDYAMKV-FEEMRVAGC-QPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIV 467
Query: 441 -YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+++ + ++ E+ V KEM+ + TF + AY+ CG
Sbjct: 468 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCG 515
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 136/330 (41%), Gaps = 35/330 (10%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ TYN +L Y G+ + D K + ++P + TYNTLIS R L +
Sbjct: 254 TLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEV 313
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F+E+K + SP+ TYN L+ Y + + E+ + M+A P TY L+ YA
Sbjct: 314 FEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYAR 373
Query: 309 SGNLPR-MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
G L ME ++VK + F ++ + K D K+ MR+ +
Sbjct: 374 DGLLDEAMELKSQMVKKGIKPDVFTYT-TLLSGFEKTGKDDYAMKVFEEMRVAGCQPNIC 432
Query: 368 WLNVL------------LIRVYAKE---DCLEE---------------MEKSINDAFEHK 397
N L +++V+ + +C+ + M+ ++ F+
Sbjct: 433 TFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 492
Query: 398 TSVTTV---RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454
V ++S+Y RC D+ +R AG S Y++ + A
Sbjct: 493 KRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLW 552
Query: 455 EEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
E+ E VL EM++ + ++ T+ + +AYA
Sbjct: 553 EQSEKVLAEMKDGRCKPNELTYCSLLHAYA 582
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ TYN+L+ Y +K + + R++ + + P I+++NT+I + R +
Sbjct: 675 SLTTYNSLMYMYSRTEHFEKSEDILREIIAKG-MKPDIISFNTVIFAYCRNGRMKEASRI 733
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
F E+KD L+P+V TYN IA Y + M+ + ++ + M P+ NTY
Sbjct: 734 FAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNGCKPNQNTY 784
>gi|242065966|ref|XP_002454272.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
gi|241934103|gb|EES07248.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
Length = 519
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 143/300 (47%), Gaps = 23/300 (7%)
Query: 116 RHSNG----YAFVELMKQLGSRPR--LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
RH G + F+ L ++LG R LEV W ++Q Y Y+K I GR
Sbjct: 80 RHVRGVRTEHCFL-LFEELGRRDAWLQCLEVFRWMQKQRWYVA--DNGIYSKLISVMGRK 136
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL------FRDLKKEANI 222
+ +A LF++ N K YN+L+GA++++ DK ++L F +K A
Sbjct: 137 GQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHS--RDKSKALAKALGYFEKMKCIARC 194
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
P+IVTYN L+ F + ++ F+++ +S +SP+++TYN ++ Y M ++E
Sbjct: 195 QPTIVTYNILLRAFAQAGDTKQVDILFKDLDESVVSPDIYTYNGVLDAYGKNGMIKEMES 254
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342
+ MK+ PD T+ +L+ Y +ME++++ + + P +MI Y
Sbjct: 255 VLLRMKSKQCRPDVITFNILIDSYGRKQIFDKMEQVFKSLLRSKERPTHPTFNSMITNYG 314
Query: 343 KCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSV 400
K + + K E +++ + E Y+P LI +YA DC+ + + ++ + V
Sbjct: 315 KARLRE---KAEYVVKKMEELGYKPNYVTQECLIMMYAHCDCVSKARQVFDELVSSQNKV 371
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/367 (21%), Positives = 144/367 (39%), Gaps = 49/367 (13%)
Query: 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI-NNVDLAADLFAEAANKHLKT 189
G+ PR +RR AG +E + + + + ++H++
Sbjct: 25 GAAPRHVALAARGKRRGAGAAGEEGVDEAAEAAELVRSVLRRTAGGKERLVPVLDRHVRG 84
Query: 190 IGTYNALLGAYMYNGLSD---KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
+ T + L + G D +C +FR ++K+ Y+ LISV GR +
Sbjct: 85 VRTEHCFL-LFEELGRRDAWLQCLEVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAM 143
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYM----TAWMWGKVEEIYQMMKA-GPVMPDTNTYLL 301
F ++++S P+ YN LI ++ + K ++ MK P TY +
Sbjct: 144 WLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKSKALAKALGYFEKMKCIARCQPTIVTYNI 203
Query: 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIP 361
LLR +A +G+ +++ +++ + V + ++ AY K + IK++E+++ +
Sbjct: 204 LLRAFAQAGDTKQVDILFKDLDESVVSPDIYTYNGVLDAYGKNGM---IKEMESVLLRMK 260
Query: 362 EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
K+ RP V T I+ + SY R DK
Sbjct: 261 SKQCRP-------------------------------DVITFNIL---IDSYGRKQIFDK 286
Query: 422 LANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME--NYKIDCSKKTFWIM 479
+ K + R ++S + Y R E+ E V+K+ME YK + + IM
Sbjct: 287 MEQVFKSLLRSKERPTHPTFNSMITNYGKARLREKAEYVVKKMEELGYKPNYVTQECLIM 346
Query: 480 YYAYATC 486
YA+ C
Sbjct: 347 MYAHCDC 353
>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/314 (22%), Positives = 140/314 (44%), Gaps = 38/314 (12%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I T+N LL + NG+ + +F+++K+ A P T+NTLIS + R D A +
Sbjct: 466 IVTWNTLLAVFGQNGMDSEVSGVFKEMKR-AGFVPERDTFNTLISAYSRCGFFDQAMAIY 524
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + D+ ++P++ TYN ++A +W + E++ MK G P+ TY LL YA+
Sbjct: 525 RRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANG 584
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
+ RM + E + + + L++ ++ YSK +D + + E + E+ + P
Sbjct: 585 KEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSK---SDLLTETERAFLELREQGFSP-- 639
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
+TT+ M I + +++ NF+K
Sbjct: 640 -----------------------------DITTLNAMVSIYGRRRMVSKTNEILNFIK-- 668
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
+G+ + Y+S M MY+ E+ E +L+E+ + +F + +AY G+
Sbjct: 669 -DSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRM 727
Query: 490 RKVNQVLGLMCKNG 503
++ +++ M G
Sbjct: 728 KEASRIFAEMKDFG 741
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 95/408 (23%), Positives = 177/408 (43%), Gaps = 42/408 (10%)
Query: 106 LDEKGSCLFRRHSNGYAFVE---------LMKQLG--SRPRLALEVLNWRRRQAGYGTPM 154
LDE LF S+G F ++K L + LAL V + R + + + +
Sbjct: 124 LDEILLQLFETSSDGLNFTSDSVSFDILGIIKGLVFYKKNELALCVFYFVRNREDFASIL 183
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLF 213
+ I G+ AA L + N + I Y +L+ AY NG + +F
Sbjct: 184 SNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVF 243
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLV-DHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
+ L++E P+++TYN +++V+G++ + + +K S ++P+++TYN LI+
Sbjct: 244 KKLEEEG-CRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCR 302
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
++ + E+++ MKA PD TY LL Y S R + E++K P
Sbjct: 303 RGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKS---RRPREAMEVLKEMEASGFAP 359
Query: 333 LI---RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKS 389
I ++I AY++ + D ++++ M +K +P V+ L EK+
Sbjct: 360 SIVTYNSLISAYARDGLLDEAMELKSQM---VKKGIKP-------DVFTYTTLLSGFEKT 409
Query: 390 INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL----ANFVKRAES-AGWRLCRSL---- 440
D + K +R+ C + NA+ K+ NFV+ + ++C +
Sbjct: 410 GKDDYAMKV-FEEMRVAGC-QPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIV 467
Query: 441 -YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+++ + ++ E+ V KEM+ + TF + AY+ CG
Sbjct: 468 TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCG 515
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 136/330 (41%), Gaps = 35/330 (10%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ TYN +L Y G+ + D K + ++P + TYNTLIS R L +
Sbjct: 254 TLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEV 313
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F+E+K + SP+ TYN L+ Y + + E+ + M+A P TY L+ YA
Sbjct: 314 FEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYAR 373
Query: 309 SGNLPR-MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
G L ME ++VK + F ++ + K D K+ MR+ +
Sbjct: 374 DGLLDEAMELKSQMVKKGIKPDVFTYT-TLLSGFEKTGKDDYAMKVFEEMRVAGCQPNIC 432
Query: 368 WLNVL------------LIRVYAKE---DCLEE---------------MEKSINDAFEHK 397
N L +++V+ + +C+ + M+ ++ F+
Sbjct: 433 TFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 492
Query: 398 TSVTTV---RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454
V ++S+Y RC D+ +R AG S Y++ + A
Sbjct: 493 KRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARGGLW 552
Query: 455 EEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
E+ E VL EM++ + ++ T+ + +AYA
Sbjct: 553 EQSEKVLAEMKDGRCKPNELTYCSLLHAYA 582
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ TYN+L+ Y +K + + R++ + + P I+++NT+I + R +
Sbjct: 675 SLTTYNSLMYMYSRTEHFEKSEDILREIIAKG-MKPDIISFNTVIFAYCRNGRMKEASRI 733
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
F E+KD L+P+V TYN IA Y + M+ + ++ + M P+ NTY
Sbjct: 734 FAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYMIKNECKPNQNTY 784
>gi|255582522|ref|XP_002532046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528289|gb|EEF30336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 478
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 142/294 (48%), Gaps = 20/294 (6%)
Query: 126 LMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA 183
L ++LG R + LEV W ++Q Y Y+K I G+ +A LF+E
Sbjct: 102 LFEELGRRDKWLQCLEVFRWMQKQRWYIA--DSGVYSKLISVMGKKGQTRMAMWLFSEMR 159
Query: 184 NKHLKTIGT-YNALLGAYMYNGLSDKCQSL------FRDLKKEANISPSIVTYNTLISVF 236
N + + YNAL+ A++++ DK ++L F +K P++VTYN L+ F
Sbjct: 160 NSGCRPDSSVYNALITAHLHS--KDKAKALIKALGYFEKMKGMQRCQPNVVTYNILLRAF 217
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
+ V+ + A F+++ S +SP+++TYN ++ Y M ++E + MK+ PD
Sbjct: 218 AQARNVNQVNALFKDLDQSIVSPDIYTYNGVMDAYGKNGMIREMESVLSRMKSNQCKPDI 277
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
T+ LL+ Y + +ME++++ + H + P +MI Y K + + E++
Sbjct: 278 ITFNLLIDSYGKKQDFDKMEQVFKSLLHSKERPTLPTFNSMITNYGKAR---QKENAESV 334
Query: 357 MRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFE--HKTSVTTVRIM 406
++ + + +Y P LI +Y D + + + +D E + V+T+ M
Sbjct: 335 LQKMTKMKYTPNFITYESLIMMYGFCDSVSKAREIFDDMIESGKEVKVSTLNAM 388
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/311 (20%), Positives = 123/311 (39%), Gaps = 46/311 (14%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+C +FR ++K+ Y+ LISV G+ F E+++S P+ YN L
Sbjct: 114 QCLEVFRWMQKQRWYIADSGVYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDSSVYNAL 173
Query: 268 IAGYM----TAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
I ++ A K ++ MK P+ TY +LLR +A + N+ ++ +++ +
Sbjct: 174 ITAHLHSKDKAKALIKALGYFEKMKGMQRCQPNVVTYNILLRAFAQARNVNQVNALFKDL 233
Query: 323 KHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKE 380
+ + ++ AY K + I+++E+++ + + +P + LLI Y K+
Sbjct: 234 DQSIVSPDIYTYNGVMDAYGKNGM---IREMESVLSRMKSNQCKPDIITFNLLIDSYGKK 290
Query: 381 DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL 440
++ME+ K T
Sbjct: 291 QDFDKMEQVFKSLLHSKERPTL------------------------------------PT 314
Query: 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
++S + Y R+ E ESVL++M K + T+ + Y C K ++ M
Sbjct: 315 FNSMITNYGKARQKENAESVLQKMTKMKYTPNFITYESLIMMYGFCDSVSKAREIFDDMI 374
Query: 501 KNGYDVPVNAF 511
++G +V V+
Sbjct: 375 ESGKEVKVSTL 385
>gi|293330977|ref|NP_001169349.1| uncharacterized protein LOC100383216 [Zea mays]
gi|30961817|gb|AAP37977.1| PPR2 [Zea mays]
gi|224028857|gb|ACN33504.1| unknown [Zea mays]
gi|414883415|tpg|DAA59429.1| TPA: pentatricopeptide repeat 2 [Zea mays]
Length = 571
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 145/339 (42%), Gaps = 10/339 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y K I GR A LF E + + T Y AL+GAY +GL D+ L D+K
Sbjct: 220 YMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSGLLDEALQLLNDMK 279
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P + TY+T+I D +A ++++ + ++SPN T N +++GY A
Sbjct: 280 SSPLCQPDVYTYSTIIKACIDAARFDLTDAMYKDMAERSISPNTVTQNIVLSGYGKAGRL 339
Query: 278 GKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336
+E + M+ + PD T ++L + + G + ME+ YE + + E +
Sbjct: 340 DDMERVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNI 399
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL---LIRVYAKEDCLEEMEKSINDA 393
+I AY K + D++ + MR K PW +I +A+ ME + N
Sbjct: 400 LIGAYGKRRMYDKMSAVMEHMR----KLAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQM 455
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
T + C++ + R K+ VK AE + +++ + A
Sbjct: 456 RSEGMRPDT-KTFCCLIDGFSRAGQFHKVVGMVKLAERLDVPVNTPFHNAVLGACARADD 514
Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
+ EME V + M++ + + T+ I+ AY G K+
Sbjct: 515 LVEMERVFRRMKHTQCEPDASTYSILVEAYRKEGMTDKI 553
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 39/165 (23%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T N L+GAY + DK ++ ++K A + TYN +I F +ME AF +
Sbjct: 396 TLNILIGAYGKRRMYDKMSAVMEHMRKLA-FPWTTATYNNVIEAFAEAGDAGNMEHAFNQ 454
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKV------------------------------- 280
++ + P+ T+ LI G+ A + KV
Sbjct: 455 MRSEGMRPDTKTFCCLIDGFSRAGQFHKVVGMVKLAERLDVPVNTPFHNAVLGACARADD 514
Query: 281 ----EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321
E +++ MK PD +TY +L+ Y G +KIY L
Sbjct: 515 LVEMERVFRRMKHTQCEPDASTYSILVEAYRKEG---MTDKIYAL 556
>gi|356565453|ref|XP_003550954.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Glycine max]
Length = 488
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 155/361 (42%), Gaps = 12/361 (3%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
AL+V + R Q Y + Y K I G+ A LF + L+ T Y A
Sbjct: 109 ALQVFDMLREQTFYQP--KEGTYMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTA 166
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
LL AY + + D+ S+ ++KK P + TY+TLI V D +E ++E+ +
Sbjct: 167 LLAAYCRSNMIDEAFSVLNEMKKLPRCQPDVFTYSTLIKVCVDAFKFDLVELLYEEMAER 226
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
++ PN T N ++ GY A M+ ++E++ M+ + PD T ++ + + G +
Sbjct: 227 SIMPNTVTQNIVLGGYGKAGMFDQMEKVLSSMLLSTTCKPDVWTMNTIISVFGNMGQIDM 286
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL-- 372
MEK YE ++ E +I AY K + D++ + MR K PW
Sbjct: 287 MEKWYEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMR----KLQFPWTTSTYN 342
Query: 373 -LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
+I +A + ME + D + + + C+++ Y K+ + V+ A
Sbjct: 343 NVIEAFADAGDAKHMECTF-DQMRAEGMKADTKTLCCLINGYANAGLFHKVISSVRLAGK 401
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
+ Y++ + A + EME V K M++ + T+ IM AY G K
Sbjct: 402 LEIPENITFYNAVLSACAKAEDLMEMERVFKRMKDSQCQPDDTTYTIMIEAYRKEGMNDK 461
Query: 492 V 492
+
Sbjct: 462 I 462
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/299 (20%), Positives = 115/299 (38%), Gaps = 4/299 (1%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F L+++ P TY LI + G+ F + + L P Y L+A Y
Sbjct: 112 VFDMLREQTFYQPKEGTYMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTALLAAY 171
Query: 272 MTAWMWGKVEEIYQMMKAGP-VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+ M + + MK P PD TY L++ + +E +YE +
Sbjct: 172 CRSNMIDEAFSVLNEMKKLPRCQPDVFTYSTLIKVCVDAFKFDLVELLYEEMAERSIMPN 231
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI 390
++ Y K + D+++K+ + M L + W +I V+ ++ MEK
Sbjct: 232 TVTQNIVLGGYGKAGMFDQMEKVLSSMLLSTTCKPDVWTMNTIISVFGNMGQIDMMEKWY 291
Query: 391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450
+ F + R ++ +Y + DK+++ ++ + S Y++ + +A
Sbjct: 292 -EKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFAD 350
Query: 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVN 509
+ ME +M + KT + YA G KV + L K ++P N
Sbjct: 351 AGDAKHMECTFDQMRAEGMKADTKTLCCLINGYANAGLFHKVISSVRLAGK--LEIPEN 407
>gi|357138098|ref|XP_003570635.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Brachypodium distachyon]
Length = 519
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 91/385 (23%), Positives = 170/385 (44%), Gaps = 23/385 (5%)
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNAL 196
LE+ W ++Q Y Y+K I G+ + +A LF++ N K YN+L
Sbjct: 96 LEIFRWMQKQRWYVA--DNGIYSKLISVMGKKGQIRMAMWLFSQMRNSGCKPDTSVYNSL 153
Query: 197 LGAYMYNGLSDKCQSL------FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
+GA++++ DK ++L F +K P+IVTYN L+ R +E F+
Sbjct: 154 IGAHLHS--RDKSKALAKALGYFDKMKTIERCQPNIVTYNILLRACARASDAKQVEILFK 211
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
++ +S ++P+++TYN +I GY M ++E + MK+ PD T+ +L+ Y
Sbjct: 212 DLDESLVTPDIYTYNGVIDGYGKNGMIKEMESVLVRMKSKQCRPDVITFNILIDSYGRKQ 271
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW-- 368
+ME++++ + + P +MI Y K + + K E+++ + E ++P
Sbjct: 272 IFDKMEQVFKSLLRSKERPTHPTFNSMITNYGKARLKE---KAESVLEKMDELGFKPSYV 328
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
LI +YA DC+ + ++ I D + S + + ++ +Y + +
Sbjct: 329 TQECLIMMYAYCDCVSKAQQ-IFDELVNSQSTVPLSSLNAMLDAYCMNRLPMEADRLLDA 387
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEE---MESVLKEMENYKIDCSKKTFWIMYYAYAT 485
A G S Y ++Y + R + ++ +L M I +KK F A+ T
Sbjct: 388 AIEKGVVPGASTYK---LLYKAYTRANDKVLVQKLLGRMNKQGIVPNKKFFLDALEAFGT 444
Query: 486 CGQRRKVNQVLGLMCKNGYDVPVNA 510
+ + Q K D VN+
Sbjct: 445 SANKPRRVQTSNSASKPNRDSAVNS 469
>gi|162460162|ref|NP_001106062.1| pentatricopeptide repeat 5 [Zea mays]
gi|154520281|gb|ABS82814.1| pentatricopeptide repeat protein 5 [Zea mays]
gi|413924537|gb|AFW64469.1| pentatricopeptide repeat 5 [Zea mays]
Length = 499
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 137/286 (47%), Gaps = 18/286 (6%)
Query: 126 LMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA 183
L ++LG R L+V W ++Q Y Y+K I GR + +A LF++
Sbjct: 94 LFEELGRRDAWLQCLDVFRWMQKQRWYVA--DNGIYSKLISVMGRKGQIRMAMWLFSQMR 151
Query: 184 NKHLK-TIGTYNALLGAYMYNGLSDKCQSL------FRDLKKEANISPSIVTYNTLISVF 236
N K YN+L+GA++++ DK ++L F +K P+IVTYN L+ F
Sbjct: 152 NSGCKPDTSVYNSLIGAHLHS--RDKTKALAKALGYFEKMKCIERCQPTIVTYNILLRAF 209
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
+ ++ F+++ +S +SP+V+TYN ++ Y M ++E + MK+ PD
Sbjct: 210 AQAGDTKQVDMLFKDLDESVVSPDVYTYNGVLDAYGKNGMIKEMESVLVRMKSTQCRPDV 269
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
T+ +L+ Y +ME++++ + + P +MI Y + + + K E++
Sbjct: 270 ITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTHPTFNSMITNYGRARLRE---KAESV 326
Query: 357 MRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSV 400
+ + E ++P LI +YA DC+ + + ++ +T V
Sbjct: 327 VEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQVFDELVTSQTKV 372
>gi|195616496|gb|ACG30078.1| PPR2 [Zea mays]
Length = 580
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 144/339 (42%), Gaps = 10/339 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y K I GR A LF E + + T Y AL+GAY +GL D+ L D+K
Sbjct: 229 YMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSGLLDEALQLLNDMK 288
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P + TY+T+I D +A ++++ + ++SPN T N +++GY A
Sbjct: 289 SSPLCQPDVYTYSTIIKACVDAARFDLTDAMYKDMAERSISPNTVTQNIVLSGYGKAGRL 348
Query: 278 GKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336
+E + M+ + PD T ++L + + G + ME+ YE + + E +
Sbjct: 349 DDMERVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNI 408
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL---LIRVYAKEDCLEEMEKSINDA 393
+I AY K + D++ + MR K PW +I +A+ ME + N
Sbjct: 409 LIGAYGKRRMYDKMSAVMEHMR----KLAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQM 464
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
T + C++ + R K+ VK AE +++ + A
Sbjct: 465 RSEGMRPDT-KTFCCLIDGFSRAGQFHKVVGMVKLAERLDVPANTPFHNAVLGACARADD 523
Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
+ EME V + M++ + + T+ I+ AY G K+
Sbjct: 524 LVEMERVFRRMKHTQCEPDASTYSILVEAYRKEGMTDKI 562
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 39/165 (23%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T N L+GAY + DK ++ ++K A + TYN +I F +ME AF +
Sbjct: 405 TLNILIGAYGKRRMYDKMSAVMEHMRKLA-FPWTTATYNNVIEAFAEAGDAGNMEHAFNQ 463
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKV------------------------------- 280
++ + P+ T+ LI G+ A + KV
Sbjct: 464 MRSEGMRPDTKTFCCLIDGFSRAGQFHKVVGMVKLAERLDVPANTPFHNAVLGACARADD 523
Query: 281 ----EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321
E +++ MK PD +TY +L+ Y G +KIY L
Sbjct: 524 LVEMERVFRRMKHTQCEPDASTYSILVEAYRKEG---MTDKIYAL 565
>gi|296083087|emb|CBI22491.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 157/340 (46%), Gaps = 24/340 (7%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F E N+ K I T+NAL+ + G + +F D+K SP IVT+NTL+
Sbjct: 123 AVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKT-FQCSPDIVTWNTLL 181
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
SVFG+ + + F+E+K + P T+N LI+ Y + + +Y+ M V
Sbjct: 182 SVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVN 241
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRI 350
PD ++Y +L A G + EK+ +K DG+ P +++ AY+
Sbjct: 242 PDLSSYNAVLAALARGGLWKQSEKVLAEMK---DGRCKPNELTYCSLLHAYANG------ 292
Query: 351 KKIEALMRLIPE-----KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS--VTTV 403
K+IE + L E E R L L+ V +K D L E E++ + + S +TT+
Sbjct: 293 KEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTL 352
Query: 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463
M VS Y R V K + + G+ + Y+S M MY+ E E +L+E
Sbjct: 353 NAM---VSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILRE 409
Query: 464 MENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ I ++ + YAY G+ R ++VL M ++G
Sbjct: 410 ILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESG 449
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I T NA++ Y + K + D K +PS+ TYN+L+ ++ R + E
Sbjct: 349 ITTLNAMVSIYGRRQMVAKANEIL-DCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEIL 407
Query: 250 QEIKDSNLSPNVFTYNYLIAGYM-TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
+EI + P++ +YN +I Y M + +M ++GP PD TY + YA
Sbjct: 408 REILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPA-PDIITYNTFIASYA 465
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ TYN+L+ Y + ++ + + R++ + I P I++YNT+I + R +
Sbjct: 383 SLTTYNSLMYMYSRSANFERSEEILREILAKG-IRPDIISYNTVIYAYCRNGRMRDASRV 441
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
E+++S +P++ TYN IA Y M+ + ++ M P+ +TY
Sbjct: 442 LSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTY 492
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 57/125 (45%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ SP I T N ++S++GR +V +K +P++ TYN L+ Y + +
Sbjct: 341 RQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANF 400
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+ EEI + + A + PD +Y ++ Y +G + ++ ++ +
Sbjct: 401 ERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTF 460
Query: 338 ICAYS 342
I +Y+
Sbjct: 461 IASYA 465
>gi|359487410|ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Vitis vinifera]
Length = 538
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 96/372 (25%), Positives = 175/372 (47%), Gaps = 23/372 (6%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
AL++ R+Q Y P + YTK + G+ + A+ LF ++ L+ T+ Y A
Sbjct: 111 ALKIFGLLRKQHWY-EPRC-QTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTA 168
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ AY ++G DK D+K ++ P + TY+ LI L D +E F E+
Sbjct: 169 LVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYL 228
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVE-EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ + TYN +I GY A M+ +E + +M+++G +PD T + Y +SG + +
Sbjct: 229 GIECSTVTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEK 288
Query: 315 MEKIY---ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
MEK Y +L+ D K F + +I +Y K + + K+ ++M + ++ Y P +
Sbjct: 289 MEKWYDEFQLMGIRPDIKTFNI---LIRSYGKACMYE---KMVSVMEFMKKRFYSPTIVT 342
Query: 372 --LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC-IVSSYFRCNAVDKLANFVKR 428
++I ++ + +E+ME+ +H+ V I C +VS+Y + + K+ + +++
Sbjct: 343 FNIVIEMFGRVGNIEKMEEFFLK-MKHQ-GVKPNSITYCSLVSAYSKAGYLKKVDSILRQ 400
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG- 487
E++ L ++ + Y VE M + M+ K TF M AY G
Sbjct: 401 IENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQAYNAQGM 460
Query: 488 ----QRRKVNQV 495
Q +VN +
Sbjct: 461 IEAAQNLEVNMI 472
>gi|449436321|ref|XP_004135941.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Cucumis sativus]
gi|449514880|ref|XP_004164505.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Cucumis sativus]
Length = 477
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 90/368 (24%), Positives = 163/368 (44%), Gaps = 41/368 (11%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
AL++ R+Q Y P + YTK + G+ + A+ LF ++ LK +I Y A
Sbjct: 110 ALKIFGLLRQQQWY-EPRC-QTYTKLLMLLGKCKQPEQASLLFEIMFSEGLKPSIDVYTA 167
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ AY +GL K S ++K ++ P + TY+ LI RL D ++ ++
Sbjct: 168 LVSAYGQSGLLHKAISTVDEMKSISDCKPDVHTYSILIDCCTRLRRFDLLKKILADMSCL 227
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
++ N TYN +I G+ A M+ ++E + +M+++ PD T+ +R Y +S + +
Sbjct: 228 GITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESDSCPPDLITFNTFIRAYGNSEQIEK 287
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI 374
MEK Y KEF LM + P+ W +I
Sbjct: 288 MEKWY---------KEF-----------------------QLMGIEPD----IWTYNSMI 311
Query: 375 RVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW 434
Y K ++M KS+ + E + T+ M I+ S+ R ++++ + K + G
Sbjct: 312 SSYGKAGMYDKM-KSVLNFMEKRFFSPTIVTMNTIIDSFGRAGNIEEMEEYFKNMKFQGM 370
Query: 435 RLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQ 494
+ Y S + Y +E+++S+L+++EN + F + Y G RK+ +
Sbjct: 371 KPNSVTYCSLVNAYGKSGDLEKVDSILRQIENSDVVPDTPLFNCLINVYGQAGNVRKMGE 430
Query: 495 VLGLMCKN 502
+ M +N
Sbjct: 431 LFLEMKEN 438
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 5/152 (3%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN+++ +Y G+ DK +S+ ++K SP+IVT NT+I FGR ++ ME F
Sbjct: 304 IWTYNSMISSYGKAGMYDKMKSVLNFMEKRF-FSPTIVTMNTIIDSFGRAGNIEEMEEYF 362
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ +K + PN TY L+ Y + KV+ I + ++ V+PDT + L+ Y +
Sbjct: 363 KNMKFQGMKPNSVTYCSLVNAYGKSGDLEKVDSILRQIENSDVVPDTPLFNCLINVYGQA 422
Query: 310 GNLPRMEKIYELVKHH---VDGKEFP-LIRAM 337
GN+ +M +++ +K + DG F +IRA+
Sbjct: 423 GNVRKMGELFLEMKENKCVPDGITFATMIRAL 454
>gi|297736301|emb|CBI24939.3| unnamed protein product [Vitis vinifera]
Length = 485
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 96/372 (25%), Positives = 175/372 (47%), Gaps = 23/372 (6%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
AL++ R+Q Y P + YTK + G+ + A+ LF ++ L+ T+ Y A
Sbjct: 111 ALKIFGLLRKQHWY-EPRC-QTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTA 168
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ AY ++G DK D+K ++ P + TY+ LI L D +E F E+
Sbjct: 169 LVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYL 228
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVE-EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ + TYN +I GY A M+ +E + +M+++G +PD T + Y +SG + +
Sbjct: 229 GIECSTVTYNTIIDGYGKADMFELMESSLTEMIESGTCLPDIFTLNSFIWAYGNSGQIEK 288
Query: 315 MEKIY---ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
MEK Y +L+ D K F + +I +Y K + + K+ ++M + ++ Y P +
Sbjct: 289 MEKWYDEFQLMGIRPDIKTFNI---LIRSYGKACMYE---KMVSVMEFMKKRFYSPTIVT 342
Query: 372 --LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC-IVSSYFRCNAVDKLANFVKR 428
++I ++ + +E+ME+ +H+ V I C +VS+Y + + K+ + +++
Sbjct: 343 FNIVIEMFGRVGNIEKMEEFFLK-MKHQ-GVKPNSITYCSLVSAYSKAGYLKKVDSILRQ 400
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG- 487
E++ L ++ + Y VE M + M+ K TF M AY G
Sbjct: 401 IENSDVTLDTPFFNCVLSAYGQAGDVERMGELFLVMKERKCKPDNITFATMIQAYNAQGM 460
Query: 488 ----QRRKVNQV 495
Q +VN +
Sbjct: 461 IEAAQNLEVNMI 472
>gi|108707772|gb|ABF95567.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
Length = 443
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 89/374 (23%), Positives = 155/374 (41%), Gaps = 19/374 (5%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEE---------YTKGIKFAGRINNVDLAADLFAEAA 183
RP L +R++ M KE+ + K + GR A LF E
Sbjct: 57 RPSLIASTPKTGKRRSSQVFQMLKEQPFYHPKEGTFMKLLLLLGRSGQPSRARYLFDEML 116
Query: 184 NKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
+ + T Y AL+ AY NGL D L D+K P + TY+T+I
Sbjct: 117 QQGCQPTPELYTALIAAYCRNGLLDDAFRLLADMKASPVCQPDVYTYSTIIKACVDASRF 176
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ-MMKAGPVMPDTNTYLL 301
D ++A ++++ D +++PN T N +++GY A +E++ M+ + PD T +
Sbjct: 177 DIVDAMYKDMADRSIAPNTVTQNIVLSGYGRAGRLDDMEKVLSAMLDSTTSKPDVWTMNI 236
Query: 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIP 361
+L + + G + MEK YE + + E + +I AY K + D++ + MR
Sbjct: 237 ILSLFGNRGQIESMEKWYEKFRGYGIEPETRTLNILIGAYGKKRMYDKMSAVMEYMR--- 293
Query: 362 EKEYRPWLNVL---LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA 418
K PW +I +A + ME + N T + C+++ +
Sbjct: 294 -KLAFPWTTATFNNVIEAFADAGDAKNMEHTFNQMRAEGMKPDT-KTFCCLINGFGNAGL 351
Query: 419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWI 478
K+ VK AE G + + +++ ++ + EME V M+ + T+ I
Sbjct: 352 FHKVVGMVKLAERLGVPMDTTFHNAVLMTCVKAEDLMEMERVFMRMKQIQCIPDATTYSI 411
Query: 479 MYYAYATCGQRRKV 492
+ AY G K+
Sbjct: 412 LVGAYRKEGMTDKI 425
>gi|218192673|gb|EEC75100.1| hypothetical protein OsI_11265 [Oryza sativa Indica Group]
Length = 588
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/361 (24%), Positives = 152/361 (42%), Gaps = 12/361 (3%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
AL+V + Q Y + + K + GR A LF E + + T Y A
Sbjct: 130 ALQVFQMLKEQPFYHP--KEGTFMKLLLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTA 187
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ AY NGL D L D+K P + TY+T+I D ++A ++++ D
Sbjct: 188 LIAAYCRNGLLDDAFRLLADMKASPVCQPDVYTYSTIIKACVDASRFDIVDAMYKDMADR 247
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ-MMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+++PN T N +++GY A +E++ M+ + PD T ++L + + G +
Sbjct: 248 SIAPNTVTQNIVLSGYGRAGRLDDMEKVLSAMLDSTTSKPDVWTMNIILSLFGNRGQIES 307
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL-- 372
MEK YE + + E + +I AY K + D++ + MR K PW
Sbjct: 308 MEKWYEKFRGYGIEPETRTLNILIGAYGKKRMYDKMSAVMEYMR----KLAFPWTTATFN 363
Query: 373 -LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
+I +A + ME + N T + C+++ + K+ VK AE
Sbjct: 364 NVIEAFADAGDAKNMEHTFNQMRAEGMKPDT-KTFCCLINGFGNAGLFHKVVGMVKLAER 422
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
G + + +++ ++ + EME V M+ + T+ I+ AY G K
Sbjct: 423 LGVPMDTTFHNAVLMACVKAEDLMEMERVFMRMKQIQCVPDATTYSILVGAYRKEGMTDK 482
Query: 492 V 492
+
Sbjct: 483 I 483
>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
[Vitis vinifera]
Length = 811
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 97/340 (28%), Positives = 157/340 (46%), Gaps = 24/340 (7%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F E N+ K I T+NAL+ + G + +F D+K SP IVT+NTL+
Sbjct: 395 AVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKT-FQCSPDIVTWNTLL 453
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
SVFG+ + + F+E+K + P T+N LI+ Y + + +Y+ M V
Sbjct: 454 SVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVN 513
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRI 350
PD ++Y +L A G + EK+ +K DG+ P +++ AY+
Sbjct: 514 PDLSSYNAVLAALARGGLWKQSEKVLAEMK---DGRCKPNELTYCSLLHAYANG------ 564
Query: 351 KKIEALMRLIPE-----KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS--VTTV 403
K+IE + L E E R L L+ V +K D L E E++ + + S +TT+
Sbjct: 565 KEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTL 624
Query: 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463
M VS Y R V K + + G+ + Y+S M MY+ E E +L+E
Sbjct: 625 NAM---VSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILRE 681
Query: 464 MENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ I ++ + YAY G+ R ++VL M ++G
Sbjct: 682 ILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESG 721
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 129/298 (43%), Gaps = 11/298 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ L ++ + +++K A SP VTYN L+ V+G+ QE
Sbjct: 273 TYNTLISCCRRGNLYEEAAGVLKEMKL-AGFSPDKVTYNALLDVYGKSRRSKEAMEVLQE 331
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + P++ TYN LI+ Y + E+ M + PD TY LL G+ +G
Sbjct: 332 MEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGK 391
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAY-SKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+I+E +++ A+I + ++ T+ +K E + + W N
Sbjct: 392 DKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTW-N 450
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV---RIMRCIVSSYFRCNAVDKLANFVK 427
LL V+ + M+ ++ F+ V ++SSY RC + D+ K
Sbjct: 451 TLL-SVFGQNG----MDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYK 505
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
R AG S Y++ + A ++ E VL EM++ + ++ T+ + +AYA
Sbjct: 506 RMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYAN 563
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ TYN+L+ Y + ++ + + R++ + I P I++YNT+I + R +
Sbjct: 655 SLTTYNSLMYMYSRSANFERSEEILREILAKG-IRPDIISYNTVIYAYCRNGRMRDASRV 713
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
E+++S +P++ TYN IA Y M+ + ++ M P+ +TY
Sbjct: 714 LSEMRESGPAPDIITYNTFIASYAADSMFVEAIDVVCYMIKHGCKPNQSTY 764
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I T NA++ Y + K + D K +PS+ TYN+L+ ++ R + E
Sbjct: 621 ITTLNAMVSIYGRRQMVAKANEIL-DCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEIL 679
Query: 250 QEIKDSNLSPNVFTYNYLIAGYM-TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
+EI + P++ +YN +I Y M + +M ++GP PD TY + YA
Sbjct: 680 REILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPA-PDIITYNTFIASYA 737
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 59/129 (45%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ SP I T N ++S++GR +V +K +P++ TYN L+ Y + +
Sbjct: 613 RQRGFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANF 672
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+ EEI + + A + PD +Y ++ Y +G + ++ ++ +
Sbjct: 673 ERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTF 732
Query: 338 ICAYSKCSV 346
I +Y+ S+
Sbjct: 733 IASYAADSM 741
>gi|224112076|ref|XP_002316075.1| predicted protein [Populus trichocarpa]
gi|222865115|gb|EEF02246.1| predicted protein [Populus trichocarpa]
Length = 434
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/364 (24%), Positives = 157/364 (43%), Gaps = 18/364 (4%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
A++V + Q Y + Y K + GR A LF E + ++ T Y A
Sbjct: 70 AIQVFEMLKEQPFYQP--KEATYMKLLVLLGRCGQPQRAHQLFDEMVEEGIEPTTELYTA 127
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV---FGRLLLVDHMEAAFQEI 252
LL AY N L D+ S+ +K P + TY+TL+ R L+D + +QE+
Sbjct: 128 LLAAYCRNNLIDEGFSIINQMKSLPRCQPDVYTYSTLLKACVDASRFELIDTL---YQEM 184
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +SPN T N +++GY M+ ++E + +M+++ PD T ++L + + G
Sbjct: 185 DERLISPNTVTQNVVLSGYGRVGMYDQMERVLSEMLESAACKPDVWTMNIILSVFGNEGQ 244
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ ME+ YE ++ E +I AY K + D++ + MR K PW
Sbjct: 245 IDLMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMR----KVQFPWTTS 300
Query: 372 L---LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+I +A + ME + D ++ + C+++ Y K+ + V+
Sbjct: 301 TYNNVIEAFADVGDAKNMEYAF-DQMRAESMKADTKTFCCLINGYANAGLFHKVISSVQL 359
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
A S +++ + A + EME V K M++ + +T+ IM AY G
Sbjct: 360 AAKFEIPENTSFFNAVISACAKADDLMEMERVFKRMKDKQCPPDSRTYSIMVEAYRKEGM 419
Query: 489 RRKV 492
K+
Sbjct: 420 NDKI 423
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/301 (19%), Positives = 122/301 (40%), Gaps = 8/301 (2%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F LK++ P TY L+ + GR F E+ + + P Y L+A Y
Sbjct: 73 VFEMLKEQPFYQPKEATYMKLLVLLGRCGQPQRAHQLFDEMVEEGIEPTTELYTALLAAY 132
Query: 272 MTAWMWGKVEEIYQMMKAGP-VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+ + I MK+ P PD TY LL+ + ++ +Y+ + +
Sbjct: 133 CRNNLIDEGFSIINQMKSLPRCQPDVYTYSTLLKACVDASRFELIDTLYQEMDERLISPN 192
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEK 388
++ Y + + D+++++ L ++ +P W +++ V+ E ++ ME+
Sbjct: 193 TVTQNVVLSGYGRVGMYDQMERV--LSEMLESAACKPDVWTMNIILSVFGNEGQIDLMER 250
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
+ F + R ++ +Y + DK+++ ++ + S Y++ + +
Sbjct: 251 WY-EKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKVQFPWTTSTYNNVIEAF 309
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV 508
A + ME +M + KTF + YA G KV + L K +++P
Sbjct: 310 ADVGDAKNMEYAFDQMRAESMKADTKTFCCLINGYANAGLFHKVISSVQLAAK--FEIPE 367
Query: 509 N 509
N
Sbjct: 368 N 368
>gi|115452625|ref|NP_001049913.1| Os03g0309800 [Oryza sativa Japonica Group]
gi|108707769|gb|ABF95564.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
gi|108707770|gb|ABF95565.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
gi|108707771|gb|ABF95566.1| PPR2, putative, expressed [Oryza sativa Japonica Group]
gi|113548384|dbj|BAF11827.1| Os03g0309800 [Oryza sativa Japonica Group]
gi|125586018|gb|EAZ26682.1| hypothetical protein OsJ_10586 [Oryza sativa Japonica Group]
gi|215686360|dbj|BAG87621.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215741099|dbj|BAG97594.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767065|dbj|BAG99293.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767110|dbj|BAG99338.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 501
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/361 (24%), Positives = 152/361 (42%), Gaps = 12/361 (3%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
AL+V + Q Y + + K + GR A LF E + + T Y A
Sbjct: 130 ALQVFQMLKEQPFYHP--KEGTFMKLLLLLGRSGQPSRARYLFDEMLQQGCQPTPELYTA 187
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ AY NGL D L D+K P + TY+T+I D ++A ++++ D
Sbjct: 188 LIAAYCRNGLLDDAFRLLADMKASPVCQPDVYTYSTIIKACVDASRFDIVDAMYKDMADR 247
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ-MMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+++PN T N +++GY A +E++ M+ + PD T ++L + + G +
Sbjct: 248 SIAPNTVTQNIVLSGYGRAGRLDDMEKVLSAMLDSTTSKPDVWTMNIILSLFGNRGQIES 307
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL-- 372
MEK YE + + E + +I AY K + D++ + MR K PW
Sbjct: 308 MEKWYEKFRGYGIEPETRTLNILIGAYGKKRMYDKMSAVMEYMR----KLAFPWTTATFN 363
Query: 373 -LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
+I +A + ME + N T + C+++ + K+ VK AE
Sbjct: 364 NVIEAFADAGDAKNMEHTFNQMRAEGMKPDT-KTFCCLINGFGNAGLFHKVVGMVKLAER 422
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
G + + +++ ++ + EME V M+ + T+ I+ AY G K
Sbjct: 423 LGVPMDTTFHNAVLMTCVKAEDLMEMERVFMRMKQIQCIPDATTYSILVGAYRKEGMTDK 482
Query: 492 V 492
+
Sbjct: 483 I 483
>gi|242037185|ref|XP_002465987.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
gi|241919841|gb|EER92985.1| hypothetical protein SORBIDRAFT_01g049600 [Sorghum bicolor]
Length = 480
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 161/359 (44%), Gaps = 18/359 (5%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
ALE+ R+Q Y P + + Y + + G+ AA LF ++ L+ T Y A
Sbjct: 109 ALEIFELLRKQHWY-EPRS-QTYARLLMMLGKCRQPGPAAALFKAMLSERLRPTADVYTA 166
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+GAY Y+GL D+ + +K A+ P T++ LI+ + D + A E+
Sbjct: 167 LVGAYGYSGLLDEALAAVEQMKGAADCKPDGYTFSVLINCCAKSRRFDLIPAVLDEMSYL 226
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVE-EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ N +N +I GY A M+ ++E + M+++G +PD T ++ Y + G
Sbjct: 227 GIECNSVIHNAIIDGYGKAAMFEEMEGALSAMLESGSNVPDIYTMNSVIGAYGNHGRTDE 286
Query: 315 MEKIY---ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
MEK Y +L+ D K F + MI +Y K + D++ I R + ++ + P
Sbjct: 287 MEKSYSEFQLMGVEPDTKTFNI---MIKSYGKAGMYDKMMSI---FRYMKKRFFSPTAVT 340
Query: 372 L--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC-IVSSYFRCNAVDKLANFVKR 428
+I + + +E+ME V I C +V+ Y + +DK+ +++
Sbjct: 341 FNTVIECFGRAGNIEKMEYYFR--LMKIQGVKPNPITYCSLVNGYSKAGLLDKVPGIIRQ 398
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
E+ L ++ + YA ++ ME +L+ M+ K K T+ M AY G
Sbjct: 399 TENTNVVLDTPFFNCVISAYAKSGDIKIMEEMLQLMKEKKCKPDKITYATMIQAYTAQG 457
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 1/163 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ +Y G+ DK S+FR +KK SP+ VT+NT+I FGR ++ ME F+
Sbjct: 305 TFNIMIKSYGKAGMYDKMMSIFRYMKKRF-FSPTAVTFNTVIECFGRAGNIEKMEYYFRL 363
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K + PN TY L+ GY A + KV I + + V+ DT + ++ YA SG+
Sbjct: 364 MKIQGVKPNPITYCSLVNGYSKAGLLDKVPGIIRQTENTNVVLDTPFFNCVISAYAKSGD 423
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE 354
+ ME++ +L+K + MI AY+ + + + +E
Sbjct: 424 IKIMEEMLQLMKEKKCKPDKITYATMIQAYTAQGMDEAARLLE 466
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 55/295 (18%), Positives = 118/295 (40%), Gaps = 20/295 (6%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F L+K+ P TY L+ + G+ A F+ + L P Y L+ Y
Sbjct: 112 IFELLRKQHWYEPRSQTYARLLMMLGKCRQPGPAAALFKAMLSERLRPTADVYTALVGAY 171
Query: 272 MTAWMWGK-VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+ + + + + QM A PD T+ +L+ A S + ++L+ +D
Sbjct: 172 GYSGLLDEALAAVEQMKGAADCKPDGYTFSVLINCCAKS-------RRFDLIPAVLDEMS 224
Query: 331 FPLIR-------AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKED 381
+ I A+I Y K ++ + ++ AL ++ P + + +I Y
Sbjct: 225 YLGIECNSVIHNAIIDGYGKAAMFEEMEG--ALSAMLESGSNVPDIYTMNSVIGAYGNHG 282
Query: 382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLY 441
+EMEKS ++ F+ + ++ SY + DK+ + + + + +
Sbjct: 283 RTDEMEKSYSE-FQLMGVEPDTKTFNIMIKSYGKAGMYDKMMSIFRYMKKRFFSPTAVTF 341
Query: 442 HSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
++ + + +E+ME + M+ + + T+ + Y+ G KV ++
Sbjct: 342 NTVIECFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGLLDKVPGII 396
>gi|225438599|ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic [Vitis vinifera]
gi|296082481|emb|CBI21486.3| unnamed protein product [Vitis vinifera]
Length = 489
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 131/280 (46%), Gaps = 18/280 (6%)
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNAL 196
LEV W ++Q Y Y+K I G+ +A LF+E N + YNAL
Sbjct: 118 LEVFRWMQKQRWYIA--DNGVYSKLISVMGKKGQTRMAMWLFSEMRNSGCRPDTSVYNAL 175
Query: 197 LGAYMYNGLSDKCQSL------FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
+ A++++ DK ++L F +K P+IVTYN L+ F + V+ A F+
Sbjct: 176 ITAHLHS--RDKSKALIKALGYFDKMKGMERCKPNIVTYNILLRAFAQAQNVNQANALFK 233
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+ +S +SP++FT+N ++ Y M ++E + MK+ PD T+ +L+ Y
Sbjct: 234 ELNESIVSPDIFTFNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDIITFNVLIDSYGRRQ 293
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+ME++++ + + P +MI Y K + + K E + + + + Y P
Sbjct: 294 EFDKMEQVFKSLLRSKEKPTLPTFNSMITNYGKARLKE---KAENVFKKMTDMGYAPNFI 350
Query: 371 VL--LIRVYAKEDCLEEMEKSIND--AFEHKTSVTTVRIM 406
LI +Y DC+ + ++ A + + V+T+ M
Sbjct: 351 TYESLIMMYGFCDCISRAREIFDEMMASKKEMKVSTLNAM 390
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/315 (21%), Positives = 129/315 (40%), Gaps = 17/315 (5%)
Query: 184 NKHLKTIGTYNALLGAYMYNGLSDK---CQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
NK++K I T + + G +DK C +FR ++K+ Y+ LISV G+
Sbjct: 90 NKYVKVIRTEHCFR-LFEELGKTDKWLQCLEVFRWMQKQRWYIADNGVYSKLISVMGKKG 148
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM-----TAWMWGKVEEIYQMMKAGPVMPD 295
F E+++S P+ YN LI ++ + + + +M P+
Sbjct: 149 QTRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSRDKSKALIKALGYFDKMKGMERCKPN 208
Query: 296 TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA 355
TY +LLR +A + N+ + +++ + + + ++ AY K + IK++E+
Sbjct: 209 IVTYNILLRAFAQAQNVNQANALFKELNESIVSPDIFTFNGVMDAYGKNGM---IKEMES 265
Query: 356 LMRLIPEKEYRP---WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS 412
++ + + +P NVL I Y + ++ME+ K T+ ++++
Sbjct: 266 VLSRMKSNQCKPDIITFNVL-IDSYGRRQEFDKMEQVFKSLLRSKEK-PTLPTFNSMITN 323
Query: 413 YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS 472
Y + +K N K+ G+ Y S ++MY + + EM K +
Sbjct: 324 YGKARLKEKAENVFKKMTDMGYAPNFITYESLIMMYGFCDCISRAREIFDEMMASKKEMK 383
Query: 473 KKTFWIMYYAYATCG 487
T M Y G
Sbjct: 384 VSTLNAMLEVYCMNG 398
>gi|356528509|ref|XP_003532845.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Glycine max]
Length = 580
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/373 (23%), Positives = 159/373 (42%), Gaps = 48/373 (12%)
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNAL 196
LEV W ++Q Y Y+K I G+ +A LF+E N + YNAL
Sbjct: 156 LEVFRWMQKQRWY--IADNGIYSKLISVMGKKGQTRMAMWLFSEMRNTGCRPDTSVYNAL 213
Query: 197 LGAYMYNGLSDKCQSL------FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
+ A++ + DK ++L F+ +K P+IVTYN L+ F + V+ + + F+
Sbjct: 214 ITAHLRS--RDKIKALAKAIGYFQKMKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFK 271
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
++ +S +SP+++T+N ++ Y M ++E + MK+ PD T+ LL+ Y
Sbjct: 272 DLDESIVSPDIYTFNGVMDAYGKNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQ 331
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+ME++++ + H + P +MI Y K + D+
Sbjct: 332 AFGKMEQVFKSLLHSKERPSLPTFNSMILNYGKARLKDKA-------------------- 371
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
ED ++M + S T M + Y C+ V + A
Sbjct: 372 ---------EDVFKKMTD-----MGYTLSFVTHESM---IYMYGFCDCVSRAAQLFDELV 414
Query: 431 SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRR 490
+ + S ++ + +Y +E +S+ + + KI TF ++Y AY Q+
Sbjct: 415 ESKVHIKVSTLNAMLDVYCLNGLPQEADSLFERAISIKIHPDSSTFKLLYKAYTKANQKE 474
Query: 491 KVNQVLGLMCKNG 503
++++L M K+G
Sbjct: 475 LLDKLLKHMDKDG 487
>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 513
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/327 (23%), Positives = 148/327 (45%), Gaps = 3/327 (0%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
L T ++N L+ AY G ++ + + ++K E+N SP +VTYNT + V + E
Sbjct: 133 LPTETSFNVLMAAYSRGGQLERAERVLHEMK-ESNCSPGLVTYNTYLEVLNKSGSWQLAE 191
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
F+E+++ + P V T+ +I Y A K E ++Q M+ P TY L+ +
Sbjct: 192 DVFREMQNRGVPPAVNTFTLMINIYGKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAH 251
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
A GN R E+I+ ++ + A++ AYS+ K++ M K
Sbjct: 252 AREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADH 311
Query: 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
N+ LI + + + + + +I D+ + T++ ++S++ + V NFV
Sbjct: 312 VSYNI-LIDAFGRAGLISDAQ-AIYDSMKKVGFKPTMKSHILLLSAFVKAGRVTDAENFV 369
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
+R ES G +++S + Y + R+++MES+ + M+ T + YA
Sbjct: 370 RRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQGSVCKPDIITLNTLINVYAQG 429
Query: 487 GQRRKVNQVLGLMCKNGYDVPVNAFPS 513
G + ++ + G+ V ++ S
Sbjct: 430 GYIERAEEIFNSLESKGFTPDVMSWTS 456
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 94/196 (47%), Gaps = 2/196 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I R N A ++FAE + + I TYNALL AY G + +F +
Sbjct: 244 YTALINAHAREGNCVRAEEIFAELQSVGFVPDIYTYNALLEAYSRGGHPAGAKEVFETML 303
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
EA + V+YN LI FGR L+ +A + +K P + ++ L++ ++ A
Sbjct: 304 -EAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPTMKSHILLLSAFVKAGRV 362
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
E + +++ V PDT + LL Y +SG + +ME +YE ++ V + + +
Sbjct: 363 TDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQGSVCKPDIITLNTL 422
Query: 338 ICAYSKCSVTDRIKKI 353
I Y++ +R ++I
Sbjct: 423 INVYAQGGYIERAEEI 438
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 22/187 (11%)
Query: 118 SNGYAFVELMKQLGSRPRLALEVLNWRR-RQAGYGTPMTKEEYTKGIKFAGRINNVDLAA 176
S+ A + MK++G +P + +L +AG T F R+ ++ +
Sbjct: 328 SDAQAIYDSMKKVGFKPTMKSHILLLSAFVKAG--------RVTDAENFVRRLESMGVEP 379
Query: 177 DLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
D F +N+LLGAY +G DK +SL+ ++ P I+T NTLI+V+
Sbjct: 380 DTF------------MFNSLLGAYGNSGRMDKMESLYESMQGSV-CKPDIITLNTLINVY 426
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
+ ++ E F ++ +P+V ++ L+ Y ++ K +YQ M +PD
Sbjct: 427 AQGGYIERAEEIFNSLESKGFTPDVMSWTSLMGAYSKRKLYRKCVSVYQKMLIAGCIPDR 486
Query: 297 NTYLLLL 303
T +LL
Sbjct: 487 ATAKVLL 493
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 3/142 (2%)
Query: 166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
AG I++ D + K T+ ++ LL A++ G ++ R L+ + P
Sbjct: 324 AGLISDAQAIYDSMKKVGFK--PTMKSHILLLSAFVKAGRVTDAENFVRRLES-MGVEPD 380
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+N+L+ +G +D ME+ ++ ++ S P++ T N LI Y + EEI+
Sbjct: 381 TFMFNSLLGAYGNSGRMDKMESLYESMQGSVCKPDIITLNTLINVYAQGGYIERAEEIFN 440
Query: 286 MMKAGPVMPDTNTYLLLLRGYA 307
+++ PD ++ L+ Y+
Sbjct: 441 SLESKGFTPDVMSWTSLMGAYS 462
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ S P+V +N L+ Y W + E + +MK +P ++ +L+ Y+ G
Sbjct: 92 LQGSMFKPDVGCFNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAAYSRGGQ 151
Query: 312 LPRMEKIYELVKH 324
L R E++ +K
Sbjct: 152 LERAERVLHEMKE 164
>gi|356564951|ref|XP_003550709.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Glycine max]
Length = 488
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 157/365 (43%), Gaps = 20/365 (5%)
Query: 137 ALEVLNWRRRQAGY----GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIG 191
AL+V + R Q Y GT M K I G+ A LF + L+ T
Sbjct: 109 ALQVFDMLREQTFYQPKEGTCM------KLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPE 162
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y ALL AY + + D+ S+ ++KK P + TY+TLI V D ++ ++E
Sbjct: 163 LYTALLAAYCRSNMIDEAFSVLNEMKKLPLCQPDVFTYSTLIKVCVDAFKFDLVQLLYEE 222
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + +++PN T N ++ GY A M+ ++E++ M+++ PD T ++ + + G
Sbjct: 223 MAERSITPNTVTQNIVLGGYGKAGMFDQMEKVLSSMLQSTTCKPDVWTMNTIISVFGNMG 282
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+ EK YE ++ E +I AY K + D++ + MR K PW
Sbjct: 283 QIDMTEKWYEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMR----KLQFPWTT 338
Query: 371 VL---LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
+I +A + ME + D + + + C+++ Y K+ + V+
Sbjct: 339 STYNNVIEAFADAGDAKHMECTF-DQMRAEGMKADTKTLCCLINGYANAGLFHKVISSVR 397
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
A + Y++ + A + EME V K M++ + T+ IM AY G
Sbjct: 398 LAGKLEIPENITFYNAVLSACAKAEDLMEMERVFKRMKDSQCQPDDTTYTIMIEAYRKEG 457
Query: 488 QRRKV 492
K+
Sbjct: 458 MNDKI 462
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 58/301 (19%), Positives = 115/301 (38%), Gaps = 8/301 (2%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F L+++ P T LI + G+ F + + L P Y L+A Y
Sbjct: 112 VFDMLREQTFYQPKEGTCMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTALLAAY 171
Query: 272 MTAWMWGKVEEIYQMMKAGPV-MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+ M + + MK P+ PD TY L++ + ++ +YE +
Sbjct: 172 CRSNMIDEAFSVLNEMKKLPLCQPDVFTYSTLIKVCVDAFKFDLVQLLYEEMAERSITPN 231
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEK 388
++ Y K + D+++K+ L ++ +P W +I V+ ++ EK
Sbjct: 232 TVTQNIVLGGYGKAGMFDQMEKV--LSSMLQSTTCKPDVWTMNTIISVFGNMGQIDMTEK 289
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
+ F + R ++ +Y + DK+++ ++ + S Y++ + +
Sbjct: 290 WY-EKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAF 348
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV 508
A + ME +M + KT + YA G KV + L K ++P
Sbjct: 349 ADAGDAKHMECTFDQMRAEGMKADTKTLCCLINGYANAGLFHKVISSVRLAGK--LEIPE 406
Query: 509 N 509
N
Sbjct: 407 N 407
>gi|115450301|ref|NP_001048751.1| Os03g0115300 [Oryza sativa Japonica Group]
gi|113547222|dbj|BAF10665.1| Os03g0115300 [Oryza sativa Japonica Group]
Length = 442
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 103/433 (23%), Positives = 188/433 (43%), Gaps = 24/433 (5%)
Query: 75 ARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGS-- 132
R K + A + E L+ + + + K + R+HS +++ L S
Sbjct: 5 GRRHKPPSSAPEAEQPEALSRILRTEAAVSGVSRKAAAASRQHSTRLWPRAVLEALDSAV 64
Query: 133 ---RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK- 188
R ALE+ R+Q Y P + + Y + + G+ A LF ++ LK
Sbjct: 65 ASCRWEPALEIFELLRKQQWY-KPRS-QTYARLLMMLGKCQQPGAATALFKVMLSERLKP 122
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ Y AL+GAY Y+GL D+ + +K A+ P T++ LI+ +L D + A
Sbjct: 123 TVDVYTALVGAYGYSGLLDQALATVEQMKGVADCKPDEYTFSVLINCCSKLRRFDRIPAI 182
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYA 307
E+ L N +N +I GY A M ++E + M++ G +PD T ++ Y
Sbjct: 183 LDEMSYLGLQCNAVIHNAIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTMNSIIWAYG 242
Query: 308 HSGN-LPRMEKIY---ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
+ GN + ME+ Y +L+ D + F + MI +Y + D K+ ++++ + +
Sbjct: 243 NHGNRIHEMERWYSEFQLMGVEPDTQTFNI---MIKSYGNAKMHD---KMMSVLKYMKKH 296
Query: 364 EYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC-IVSSYFRCNAVD 420
+ P + ++I + + +E+ME V I C +V+ Y + +D
Sbjct: 297 FFSPTVVTFNIIIESFGRAGNIEKMEYYFR--LMKIQGVKPNPITYCSLVNGYSKAGFLD 354
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480
K+ +++ E+ L ++ + YA ++ ME +L+ M+ K K T+ M
Sbjct: 355 KVPGIIRQTENTDVVLDTPFFNCVIDAYAKSGDIKIMEEMLQLMKEKKCKPDKVTYTTMI 414
Query: 481 YAYATCGQRRKVN 493
AY G N
Sbjct: 415 QAYNVHGMDEAAN 427
>gi|27476102|gb|AAO17033.1| Hypothetical protein [Oryza sativa Japonica Group]
gi|108705848|gb|ABF93643.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125584686|gb|EAZ25350.1| hypothetical protein OsJ_09164 [Oryza sativa Japonica Group]
Length = 450
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 103/433 (23%), Positives = 188/433 (43%), Gaps = 24/433 (5%)
Query: 75 ARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGS-- 132
R K + A + E L+ + + + K + R+HS +++ L S
Sbjct: 5 GRRHKPPSSAPEAEQPEALSRILRTEAAVSGVSRKAAAASRQHSTRLWPRAVLEALDSAV 64
Query: 133 ---RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK- 188
R ALE+ R+Q Y P + + Y + + G+ A LF ++ LK
Sbjct: 65 ASCRWEPALEIFELLRKQQWY-KPRS-QTYARLLMMLGKCQQPGAATALFKVMLSERLKP 122
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ Y AL+GAY Y+GL D+ + +K A+ P T++ LI+ +L D + A
Sbjct: 123 TVDVYTALVGAYGYSGLLDQALATVEQMKGVADCKPDEYTFSVLINCCSKLRRFDRIPAI 182
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYA 307
E+ L N +N +I GY A M ++E + M++ G +PD T ++ Y
Sbjct: 183 LDEMSYLGLQCNAVIHNAIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTMNSIIWAYG 242
Query: 308 HSGN-LPRMEKIY---ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
+ GN + ME+ Y +L+ D + F + MI +Y + D K+ ++++ + +
Sbjct: 243 NHGNRIHEMERWYSEFQLMGVEPDTQTFNI---MIKSYGNAKMHD---KMMSVLKYMKKH 296
Query: 364 EYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC-IVSSYFRCNAVD 420
+ P + ++I + + +E+ME V I C +V+ Y + +D
Sbjct: 297 FFSPTVVTFNIIIESFGRAGNIEKMEYYFR--LMKIQGVKPNPITYCSLVNGYSKAGFLD 354
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480
K+ +++ E+ L ++ + YA ++ ME +L+ M+ K K T+ M
Sbjct: 355 KVPGIIRQTENTDVVLDTPFFNCVIDAYAKSGDIKIMEEMLQLMKEKKCKPDKVTYTTMI 414
Query: 481 YAYATCGQRRKVN 493
AY G N
Sbjct: 415 QAYNVHGMDEAAN 427
>gi|297833394|ref|XP_002884579.1| EMB2750 [Arabidopsis lyrata subsp. lyrata]
gi|297330419|gb|EFH60838.1| EMB2750 [Arabidopsis lyrata subsp. lyrata]
Length = 486
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 92/387 (23%), Positives = 167/387 (43%), Gaps = 16/387 (4%)
Query: 115 RRHSNGYA--FVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN 170
R +NG+A E + L ++ + ALEV + R Q Y + Y K + G+
Sbjct: 81 RSKANGWANTVTETLSDLIAKKQWLQALEVFDMLREQTFYQP--KEGTYMKLLVLLGKSG 138
Query: 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
+ A LF E + L+ T+ Y ALL AY + L D S+ +K P + TY
Sbjct: 139 QPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDTMKGLPQCQPDVFTY 198
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMK 288
+TL+ D +++ ++E+ + ++PN T N +++GY + ++E++ M+
Sbjct: 199 STLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLV 258
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+ PD T ++L + + G + ME YE ++ E +I +Y K + D
Sbjct: 259 STACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYD 318
Query: 349 RIKKIEALMRLIPEKEYRPWLNVL---LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRI 405
++ + MR + E+ PW +I +A + ME + D + +
Sbjct: 319 KMSSVMEYMRKL---EF-PWTTSTYNNIIEAFADVGDAKNMELTF-DQMRSEGMKADTKT 373
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
C+++ Y K+ + V+ A + Y++ + A + EME V M+
Sbjct: 374 FCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVIAACAKADDLIEMERVYTRMK 433
Query: 466 NYKIDCSKKTFWIMYYAYATCGQRRKV 492
+ C +TF IM AY G K+
Sbjct: 434 ERQCVCDSRTFEIMVEAYEKEGMNDKI 460
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 130/320 (40%), Gaps = 40/320 (12%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
GTY LL +G ++ Q LF ++ +E + P++ Y L++ + R L+D +
Sbjct: 125 GTYMKLLVLLGKSGQPNRAQKLFDEMLEEG-LEPTVELYTALLAAYTRSNLIDDAFSILD 183
Query: 251 EIKD-SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+K P+VFTY+ L+ + A + V+ +Y+ M + P+T T ++L GY
Sbjct: 184 TMKGLPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRV 243
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G +MEK+ L ++ K V W
Sbjct: 244 GRFDQMEKV--------------LSDMLVSTACKPDV---------------------WT 268
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
+++ V+ ++ ME S + F + R ++ SY + DK+++ ++
Sbjct: 269 MNIILSVFGNMGKIDMME-SWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYM 327
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
+ S Y++ + +A + ME +M + + KTF + YA G
Sbjct: 328 RKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLF 387
Query: 490 RKVNQVLGLMCKNGYDVPVN 509
KV + L K +++P N
Sbjct: 388 HKVISSVQLAAK--FEIPEN 405
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 88/192 (45%), Gaps = 8/192 (4%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G + +D+ + + N ++ T+N L+G+Y + DK S+ ++K +
Sbjct: 277 GNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRK-LEFPWT 335
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
TYN +I F + +ME F +++ + + T+ LI GY A ++ KV Q
Sbjct: 336 TSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQ 395
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH---VDGKEFPLIRAMICAYS 342
+ + +T Y ++ A + +L ME++Y +K D + F + M+ AY
Sbjct: 396 LAAKFEIPENTAFYNAVIAACAKADDLIEMERVYTRMKERQCVCDSRTFEI---MVEAYE 452
Query: 343 KCSVTDRIKKIE 354
K + D+I +E
Sbjct: 453 KEGMNDKIYYLE 464
>gi|356532886|ref|XP_003535000.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Glycine max]
Length = 485
Score = 95.1 bits (235), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 151/362 (41%), Gaps = 11/362 (3%)
Query: 136 LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA 195
+ALE+ + R Q Y ++ Y K I G+ + A +LF + Y A
Sbjct: 110 IALELFDMLREQPYYQP--REDTYMKLIVLLGKSSQPLRAHELFNSIHEDGCGSTELYTA 167
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ A+ N L D+ S+ ++ + P I TY+TLI L + +E F ++
Sbjct: 168 LIAAFCQNNLVDEALSILDEMMNLPSCQPDIFTYSTLIKALVDSLKFEMVELLFDKMAKR 227
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
++ PN +T N +++GY A + ++E+I MM+ PD T ++ + G +
Sbjct: 228 SIVPNTYTQNLILSGYGKAGRFDQMEKIVSSMMEGTTCKPDVWTMNTVISVFGDKGQIDI 287
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL-- 372
MEK Y+ + +I AY + D++ + MR + PW
Sbjct: 288 MEKWYDKFCSFGIQPQRSTFNILIAAYGSKRMYDKMSSVMQCMRRVK----CPWTTSTYN 343
Query: 373 -LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
+I +A E ME++ + + T + +++ Y K+ + V AE
Sbjct: 344 NVIEAFAAVGDAENMERAFDQMYAEGLKADT-KTFCFLINGYANAGIFHKVISSVSLAEK 402
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
R+ S Y++ + A + EME K M+ + T+ +M AY G K
Sbjct: 403 LQIRVNTSFYNAIISACAKDDALTEMERFFKHMKEKECHPDNTTYSVMIEAYRKEGMNDK 462
Query: 492 VN 493
++
Sbjct: 463 IH 464
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 7/173 (4%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
T+N L+ AY + DK S+ + +++ + TYN +I F + ++ME AF
Sbjct: 305 STFNILIAAYGSKRMYDKMSSVMQCMRR-VKCPWTTSTYNNVIEAFAAVGDAENMERAFD 363
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
++ L + T+ +LI GY A ++ KV + + + +T+ Y ++ A
Sbjct: 364 QMYAEGLKADTKTFCFLINGYANAGIFHKVISSVSLAEKLQIRVNTSFYNAIISACAKDD 423
Query: 311 NLPRMEKIYELVKH---HVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI 360
L ME+ ++ +K H D + + MI AY K + D+I +E R++
Sbjct: 424 ALTEMERFFKHMKEKECHPDNTTYSV---MIEAYRKEGMNDKIHYLEQEKRMM 473
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 52/272 (19%), Positives = 103/272 (37%), Gaps = 39/272 (14%)
Query: 277 WGKVEEIYQMMKAGPV-MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG-KEFPLI 334
W E++ M++ P P +TY+ L+ S R +++ + H DG L
Sbjct: 108 WSIALELFDMLREQPYYQPREDTYMKLIVLLGKSSQPLRAHELFNSI--HEDGCGSTELY 165
Query: 335 RAMICAYSKCSVTD---------------------------------RIKKIEALMRLIP 361
A+I A+ + ++ D + + +E L +
Sbjct: 166 TALIAAFCQNNLVDEALSILDEMMNLPSCQPDIFTYSTLIKALVDSLKFEMVELLFDKMA 225
Query: 362 EKEYRP--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
++ P + L++ Y K ++MEK ++ E T V M ++S + +
Sbjct: 226 KRSIVPNTYTQNLILSGYGKAGRFDQMEKIVSSMMEGTTCKPDVWTMNTVISVFGDKGQI 285
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
D + + + S G + RS ++ + Y S+R ++M SV++ M K + T+ +
Sbjct: 286 DIMEKWYDKFCSFGIQPQRSTFNILIAAYGSKRMYDKMSSVMQCMRRVKCPWTTSTYNNV 345
Query: 480 YYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
A+A G + + M G F
Sbjct: 346 IEAFAAVGDAENMERAFDQMYAEGLKADTKTF 377
>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 87/365 (23%), Positives = 159/365 (43%), Gaps = 19/365 (5%)
Query: 143 WRRRQAGYGTP--MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGA 199
WR Q +P + E ++ +K GR+ V+ A +F + + + T GTYN+++
Sbjct: 145 WRTIQDMVKSPCAIGPSELSEIVKILGRVKMVNKALSIFYQVKGRKCRPTAGTYNSVILM 204
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
M G +K L+ ++ E + P VTY+ LIS FG+L D F E+K++ L P
Sbjct: 205 LMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISAFGKLNRDDSAVRLFDEMKENGLQP 264
Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
Y L+ Y + GKVEE + M+ +P TY L+RG SG R+E
Sbjct: 265 TAKIYTTLMGIY---FKLGKVEEALNLVHEMRMRRCVPTVYTYTELIRGLGKSG---RVE 318
Query: 317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL---MRLIPEKEYRPWLNVLL 373
Y + K+ + P + M + +DR+K+ L MRL+ N ++
Sbjct: 319 DAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCTPNVVTYNTII 378
Query: 374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
++ + E + + + V + ++ + + N V+K ++ + G
Sbjct: 379 KSLFEDKAPPSEASSWL-ERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKG 437
Query: 434 WRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVN 493
+ C + Y S + +R E + +E++ S + + +M + CG + N
Sbjct: 438 FPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVMIKHFGKCG---RFN 494
Query: 494 QVLGL 498
+ +GL
Sbjct: 495 EAMGL 499
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 115/289 (39%), Gaps = 13/289 (4%)
Query: 44 HSFTRDLCAPATHTVFPTLVRLLSETLTYPDA-----RVRKDLTQTVSALRDEL---LAN 95
H C P +T + L+R L ++ DA + KD + L + L L
Sbjct: 290 HEMRMRRCVPTVYT-YTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGR 348
Query: 96 VDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMT 155
D L + + +E L N + ++K L E +W R G +
Sbjct: 349 SDRLKEAVELFEEMR--LLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPS 406
Query: 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNGLSDKCQSLFR 214
Y+ I + N V+ A L E K Y +L+ + + LF+
Sbjct: 407 SFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQ 466
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
+LK+ S S+ Y +I FG+ + F E+K P+V+ YN LI G + A
Sbjct: 467 ELKENCG-SSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRA 525
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
M + +++ M+ PD N++ ++L G A +G R +++ +K
Sbjct: 526 DMMDEAFSLFRTMEENGCNPDINSHNIILNGLARTGGPKRAMEMFAKMK 574
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 84/185 (45%), Gaps = 4/185 (2%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKC 209
G P Y I G+ + A +LF E N ++ Y ++ + G ++
Sbjct: 437 GFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVYAVMIKHFGKCGRFNEA 496
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
LF ++KK I P + YN LI+ R ++D + F+ ++++ +P++ ++N ++
Sbjct: 497 MGLFNEMKKLGCI-PDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILN 555
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329
G + E++ MK+ + PD +Y +L + +G K+ + + + G
Sbjct: 556 GLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKL--MKEMNSKGF 613
Query: 330 EFPLI 334
E+ LI
Sbjct: 614 EYDLI 618
>gi|449525698|ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Cucumis sativus]
Length = 494
Score = 95.1 bits (235), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 148/320 (46%), Gaps = 24/320 (7%)
Query: 77 VRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRL 136
V+ D ++ +R ++ N D + + + LD+ + H F+ L ++LG R +
Sbjct: 54 VKTDRSEAEELVRG-IIRNFSDKEPLLKTLDKYVRVMRTEH----CFL-LFEELGKRDKW 107
Query: 137 --ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTY 193
LEV W ++Q Y Y+K I G+ + +A LF+E N + Y
Sbjct: 108 LECLEVFRWMQKQRWYIA--DNGVYSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVY 165
Query: 194 NALLGAYMYNGLSDKCQSL------FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
NAL+ A++++ DK ++L F +K P+IVTYN L F + VD +
Sbjct: 166 NALITAHLHS--KDKAKALVKVLSYFEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNT 223
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
F+++ +S +S +++TYN ++ Y ++E + MK+ + PD ++ LL+ Y
Sbjct: 224 LFKDLDESVVSADIYTYNGVMDAYGKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYG 283
Query: 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
+ME++++ + + P +MI Y K + + K E + R + + Y P
Sbjct: 284 KKQLFDKMEQVFKSLLRSKERPTLPTFNSMITNYGKARLRE---KAEEVFRKMKDMGYDP 340
Query: 368 WLNVL--LIRVYAKEDCLEE 385
LI +Y DC+ +
Sbjct: 341 SYVTCESLIMMYGHCDCVSK 360
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/311 (20%), Positives = 121/311 (38%), Gaps = 46/311 (14%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+C +FR ++K+ Y+ LIS+ G+ + F E+++S P+ YN L
Sbjct: 109 ECLEVFRWMQKQRWYIADNGVYSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNAL 168
Query: 268 IAGYM----TAWMWGKVEEIYQMMKAGP-VMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
I ++ A KV ++ MK P+ TY +L R +A + + ++ +++ +
Sbjct: 169 ITAHLHSKDKAKALVKVLSYFEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDL 228
Query: 323 KHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKE 380
V + ++ AY K IK++E ++ + + +P + LLI Y K+
Sbjct: 229 DESVVSADIYTYNGVMDAYGK---NGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKK 285
Query: 381 DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL 440
++ME+ + S R L F
Sbjct: 286 QLFDKMEQ--------------------VFKSLLRSKERPTLPTF--------------- 310
Query: 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
+S + Y R E+ E V ++M++ D S T + Y C K ++ M
Sbjct: 311 -NSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIFDGMV 369
Query: 501 KNGYDVPVNAF 511
+G +V V+
Sbjct: 370 NSGKEVRVSTL 380
>gi|449451631|ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Cucumis sativus]
Length = 528
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 148/320 (46%), Gaps = 24/320 (7%)
Query: 77 VRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRL 136
V+ D ++ +R ++ N D + + + LD+ + H F+ L ++LG R +
Sbjct: 54 VKTDRSEAEELVRG-IIRNFSDKEPLLKTLDKYVRVMRTEH----CFL-LFEELGKRDKW 107
Query: 137 --ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTY 193
LEV W ++Q Y Y+K I G+ + +A LF+E N + Y
Sbjct: 108 LECLEVFRWMQKQRWYIA--DNGVYSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVY 165
Query: 194 NALLGAYMYNGLSDKCQSL------FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
NAL+ A++++ DK ++L F +K P+IVTYN L F + VD +
Sbjct: 166 NALITAHLHS--KDKAKALVKVLSYFEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNT 223
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
F+++ +S +S +++TYN ++ Y ++E + MK+ + PD ++ LL+ Y
Sbjct: 224 LFKDLDESVVSADIYTYNGVMDAYGKNGNIKEMELMLARMKSNQIKPDIISFNLLIDSYG 283
Query: 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
+ME++++ + + P +MI Y K + + K E + R + + Y P
Sbjct: 284 KKQLFDKMEQVFKSLLRSKERPTLPTFNSMITNYGKARLRE---KAEEVFRKMKDMGYDP 340
Query: 368 WLNVL--LIRVYAKEDCLEE 385
LI +Y DC+ +
Sbjct: 341 SYVTCESLIMMYGHCDCVSK 360
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/311 (20%), Positives = 121/311 (38%), Gaps = 46/311 (14%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+C +FR ++K+ Y+ LIS+ G+ + F E+++S P+ YN L
Sbjct: 109 ECLEVFRWMQKQRWYIADNGVYSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNAL 168
Query: 268 IAGYM----TAWMWGKVEEIYQMMKAGP-VMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
I ++ A KV ++ MK P+ TY +L R +A + + ++ +++ +
Sbjct: 169 ITAHLHSKDKAKALVKVLSYFEKMKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDL 228
Query: 323 KHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKE 380
V + ++ AY K IK++E ++ + + +P + LLI Y K+
Sbjct: 229 DESVVSADIYTYNGVMDAYGK---NGNIKEMELMLARMKSNQIKPDIISFNLLIDSYGKK 285
Query: 381 DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL 440
++ME+ + S R L F
Sbjct: 286 QLFDKMEQ--------------------VFKSLLRSKERPTLPTF--------------- 310
Query: 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
+S + Y R E+ E V ++M++ D S T + Y C K ++ M
Sbjct: 311 -NSMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIFDGMV 369
Query: 501 KNGYDVPVNAF 511
+G +V V+
Sbjct: 370 NSGKEVRVSTL 380
>gi|226500056|ref|NP_001147821.1| pentatricopeptide repeat 2 [Zea mays]
gi|195613946|gb|ACG28803.1| PPR2 [Zea mays]
Length = 562
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 143/339 (42%), Gaps = 10/339 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y K I GR A LF E + + T Y AL+GAY + L D+ L D+K
Sbjct: 211 YMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALIGAYCRSCLLDEALQLLNDMK 270
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P + TY+T+I D + ++++ + ++SPN T N +++GY A
Sbjct: 271 SSPLCQPDVYTYSTIIKACVDAARFDLTDTMYKDMAERSISPNTVTQNIVLSGYGKAGRL 330
Query: 278 GKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336
+E + M+ + PD T ++L + + G + ME+ YE + + E +
Sbjct: 331 DDMERVLSDMLDSVSCKPDVWTMNIILSLFGNRGEVELMERWYEKFRGYGVEPETRTLNI 390
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL---LIRVYAKEDCLEEMEKSINDA 393
+I AY K + D++ + MR K PW +I +A+ ME + N
Sbjct: 391 LIGAYGKRRMYDKMSAVMEHMR----KLAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQM 446
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
T + C++ + R K+ VK AE + +++ + A
Sbjct: 447 RSEGMRPDT-KTFCCLIDGFSRAGQFHKVVGMVKLAERLDVPVNTPFHNAVLGACARADD 505
Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
+ EME V + M++ + + T+ I+ AY G K+
Sbjct: 506 LVEMERVFRRMKHTQCEPDASTYSILVEAYRKEGMTDKI 544
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 39/165 (23%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T N L+GAY + DK ++ ++K A + TYN +I F +ME AF +
Sbjct: 387 TLNILIGAYGKRRMYDKMSAVMEHMRKLA-FPWTTATYNNVIEAFAEAGDAGNMEHAFNQ 445
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKV------------------------------- 280
++ + P+ T+ LI G+ A + KV
Sbjct: 446 MRSEGMRPDTKTFCCLIDGFSRAGQFHKVVGMVKLAERLDVPVNTPFHNAVLGACARADD 505
Query: 281 ----EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321
E +++ MK PD +TY +L+ Y G +KIY L
Sbjct: 506 LVEMERVFRRMKHTQCEPDASTYSILVEAYRKEG---MTDKIYAL 547
>gi|223946379|gb|ACN27273.1| unknown [Zea mays]
gi|413924536|gb|AFW64468.1| pentatricopeptide repeat 5 [Zea mays]
Length = 386
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 123/251 (49%), Gaps = 14/251 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL----- 212
Y+K I GR + +A LF++ N K YN+L+GA++++ DK ++L
Sbjct: 14 YSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHS--RDKTKALAKALG 71
Query: 213 -FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
F +K P+IVTYN L+ F + ++ F+++ +S +SP+V+TYN ++ Y
Sbjct: 72 YFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYNGVLDAY 131
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
M ++E + MK+ PD T+ +L+ Y +ME++++ + +
Sbjct: 132 GKNGMIKEMESVLVRMKSTQCRPDVITFNILIDSYGRKQTFDKMEQVFKSLLRSKERPTH 191
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKS 389
P +MI Y + + + K E+++ + E ++P LI +YA DC+ + +
Sbjct: 192 PTFNSMITNYGRARLRE---KAESVVEKMEELGFKPNYVTQECLIIMYAHCDCVSKARQV 248
Query: 390 INDAFEHKTSV 400
++ +T V
Sbjct: 249 FDELVTSQTKV 259
>gi|125542133|gb|EAY88272.1| hypothetical protein OsI_09727 [Oryza sativa Indica Group]
Length = 450
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 165/366 (45%), Gaps = 19/366 (5%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
ALE+ R+Q Y P + + Y + + G+ A LF ++ LK T+ Y A
Sbjct: 72 ALEIFELLRKQQWY-KPRS-QTYARLLMMLGKCRQPGAATALFKVMLSERLKPTVDVYTA 129
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+GAY Y+GL D+ + +K A+ P T++ LI+ +L D + A E+
Sbjct: 130 LVGAYGYSGLLDEALATVEQMKGVADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYL 189
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHSGN-LP 313
L N +N +I GY A M ++E + M++ G +PD T ++ Y + GN +
Sbjct: 190 GLQCNAVIHNAIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTMNSIIWAYGNHGNRIH 249
Query: 314 RMEKIY---ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
ME+ Y +L+ D + F + MI +Y + D K+ ++++ + + + P +
Sbjct: 250 EMERWYSEFQLMGVEPDTQTFNI---MIKSYGNAKMHD---KMMSVLKYMKKHFFSPTVV 303
Query: 371 V--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC-IVSSYFRCNAVDKLANFVK 427
++I + + +E+ME V I C +V+ Y + +DK+ ++
Sbjct: 304 TFNIIIESFGRAGNIEKMEYYFR--LMKIQGVKPNPITYCSLVNGYSKAGFLDKVPGIIR 361
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+ E+ L ++ + YA ++ ME +L+ M+ K K T+ M AY G
Sbjct: 362 QTENTDVVLDTPFFNCVIDAYAKSGDIKIMEEMLQLMKEKKCKPDKVTYTTMIQAYNVHG 421
Query: 488 QRRKVN 493
N
Sbjct: 422 MDEAAN 427
>gi|125541147|gb|EAY87542.1| hypothetical protein OsI_08951 [Oryza sativa Indica Group]
Length = 482
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/366 (23%), Positives = 163/366 (44%), Gaps = 31/366 (8%)
Query: 140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLG 198
V W ++Q Y Y+K I GR + +A LF++ N + YN+L+G
Sbjct: 94 VFRWMQKQRWYVA--DNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLIG 151
Query: 199 AYMYNGLSDKCQSL------FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
A++++ DK ++L F +K P+IVTYN L+ F + ++ F+++
Sbjct: 152 AHLHS--RDKSKALAKALGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDL 209
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+S +SP+++TYN ++ Y M ++E + MK+ PD T+ +L+ Y
Sbjct: 210 DESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAF 269
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLN 370
+ME++++ + + P +MI Y K + + K E ++ + E ++P
Sbjct: 270 DKMEQVFKSLLRSKEKPTHPTFNSMITNYGKARLRE---KAECVLDKMTEMGFKPNYVTQ 326
Query: 371 VLLIRVYAKEDCL-------EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLA 423
LI +YA DC+ +E+ S N+ H +SV + C+ + + L
Sbjct: 327 ECLIMMYAYCDCVSRARQIFDELVSSQNNV--HLSSVNAMLDAYCMNGLPMEADQL--LD 382
Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
+ +K+ + LY + Y + ++ +LK M + I +KK F A+
Sbjct: 383 SVIKKGAVPSASTYKLLYKA----YTKANDKKLIQKLLKRMNSQGIVPNKKFFLDALEAF 438
Query: 484 ATCGQR 489
++
Sbjct: 439 GNTDKK 444
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/323 (21%), Positives = 125/323 (38%), Gaps = 63/323 (19%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+FR ++K+ Y+ LISV GR + F ++++S P+ YN LI +
Sbjct: 94 VFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLIGAH 153
Query: 272 M----TAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
+ + K ++ MK P+ TY +LLR +A +G+ +++ +++ +
Sbjct: 154 LHSRDKSKALAKALGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESP 213
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM 386
+ ++ AY K + I ++E+++ + + RP
Sbjct: 214 VSPDIYTYNGVMDAYGKNGM---ITEMESVLVRMKSNQCRP------------------- 251
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446
V T I+ + SY R A DK+ K + + ++S +
Sbjct: 252 ------------DVITFNIL---IDSYGRKQAFDKMEQVFKSLLRSKEKPTHPTFNSMIT 296
Query: 447 MYASQRRVEEMESVLKEME--NYKIDCSKKTFWIMYYAYATCGQRRK------------- 491
Y R E+ E VL +M +K + + IM YAY C R +
Sbjct: 297 NYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCDCVSRARQIFDELVSSQNNV 356
Query: 492 ----VNQVLGLMCKNGYDVPVNA 510
VN +L C NG +P+ A
Sbjct: 357 HLSSVNAMLDAYCMNG--LPMEA 377
>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 504
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 150/329 (45%), Gaps = 18/329 (5%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS---------IVTYNTLISVFG 237
L T ++N LL AY +K + LF ++K E+N SP I TYNT + V G
Sbjct: 115 LPTETSFNVLLAAYSRGVQLEKAEKLFHEMK-ESNYSPGTVEWMIFSGIATYNTYLEVLG 173
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN 297
+ + E F++++ + P V T+ +I Y A+ K +++++ M+ P+
Sbjct: 174 KSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLY 233
Query: 298 TYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357
TY L+ +A GN R E+I+ ++ + A++ AYS+ K++
Sbjct: 234 TYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEV---F 290
Query: 358 RLIPEKEYRP---WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF 414
+ + E RP N+ LI + + + + ++ D+ + T++ ++SSY
Sbjct: 291 QAMVEAGVRPDQVSYNI-LIDAFGRAGLTADAQ-AVYDSMKEAGFKPTMKSHMLLLSSYA 348
Query: 415 RCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKK 474
+ V + V+ E++G + +++S + Y + R++EMES+L+ M +
Sbjct: 349 KAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAKPDIS 408
Query: 475 TFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
T + AYA G K +V + G
Sbjct: 409 TLNTLINAYAQGGYIEKAEEVFNSLESKG 437
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 96/201 (47%), Gaps = 12/201 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG------TYNALLGAYMYNGLSDKCQSL 212
YT + R N A ++FAE L+++G TYNALL AY + +
Sbjct: 235 YTALMNAHAREGNCVRAEEIFAE-----LQSVGFIPDVYTYNALLEAYSRGEHPTGAKEV 289
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
F+ + EA + P V+YN LI FGR L +A + +K++ P + ++ L++ Y
Sbjct: 290 FQAMV-EAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYA 348
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
A + E + + ++ V PDT + LL Y +SG + ME + E + V +
Sbjct: 349 KAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAKPDIS 408
Query: 333 LIRAMICAYSKCSVTDRIKKI 353
+ +I AY++ ++ +++
Sbjct: 409 TLNTLINAYAQGGYIEKAEEV 429
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 148/317 (46%), Gaps = 9/317 (2%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN L +G + + FRD++K+ I P++ T+ +I+++G+ D + F
Sbjct: 162 IATYNTYLEVLGKSGRLSQAEDTFRDMQKQG-ILPAVNTFTIMINIYGKAYYSDKADDLF 220
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ ++ + PN++TY L+ + + EEI+ +++ +PD TY LL Y+
Sbjct: 221 RSMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSVGFIPDVYTYNALLEAYSRG 280
Query: 310 GNLPRMEKIYE-LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ +++++ +V+ V + +I A+ + +T + + M+ E ++P
Sbjct: 281 EHPTGAKEVFQAMVEAGVRPDQVSY-NILIDAFGRAGLTADAQAVYDSMK---EAGFKPT 336
Query: 369 L--NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
+ ++LL+ YAK + E E+ + + E+ + ++S+Y +D++ + +
Sbjct: 337 MKSHMLLLSSYAKAGKVTEAERLVRE-IENSGVKPDTFMFNSLLSAYGNSGRIDEMESLL 395
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
+ S+ + S ++ + YA +E+ E V +E+ + ++ + AYA
Sbjct: 396 ESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLMGAYAQR 455
Query: 487 GQRRKVNQVLGLMCKNG 503
RK + M K G
Sbjct: 456 KLFRKCVSIFQKMVKAG 472
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
AG + D EA K T+ ++ LL +Y G + + L R+++ + + P
Sbjct: 315 AGLTADAQAVYDSMKEAGFK--PTMKSHMLLLSSYAKAGKVTEAERLVREIEN-SGVKPD 371
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+N+L+S +G +D ME+ + + S P++ T N LI Y K EE++
Sbjct: 372 TFMFNSLLSAYGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFN 431
Query: 286 MMKAGPVMPDTNTYLLLLRGYAH 308
+++ + PD ++ L+ YA
Sbjct: 432 SLESKGLTPDVMSWTSLMGAYAQ 454
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N+LL AY +G D+ +SL + P I T NTLI+ + + ++ E F +
Sbjct: 375 FNSLLSAYGNSGRIDEMESLLESMVSSV-AKPDISTLNTLINAYAQGGYIEKAEEVFNSL 433
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
+ L+P+V ++ L+ Y ++ K I+Q M +PD T + L
Sbjct: 434 ESKGLTPDVMSWTSLMGAYAQRKLFRKCVSIFQKMVKAGCIPDRATAKVFL 484
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 72/329 (21%), Positives = 120/329 (36%), Gaps = 58/329 (17%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P + +N LI +G+ E F +KD P ++N L+A Y K E++
Sbjct: 81 PDVGCFNMLIDAYGKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQLEKAEKL 140
Query: 284 YQMMKAGPVMPDT------------NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
+ MK P T NTYL +L SG L + E + ++
Sbjct: 141 FHEMKESNYSPGTVEWMIFSGIATYNTYLEVL---GKSGRLSQAEDTFRDMQKQGILPAV 197
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMR--LIPEKEYRPWLNVLLIRVYAKE-DCLEEME- 387
MI Y K +D+ + MR L P Y L+ +A+E +C+ E
Sbjct: 198 NTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLY---TYTALMNAHAREGNCVRAEEI 254
Query: 388 -------KSINDAF------------EHKTSVTTVRIMRCIVSSYFRCNAV--DKLANFV 426
I D + EH T V + +V + R + V + L +
Sbjct: 255 FAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEV--FQAMVEAGVRPDQVSYNILIDAF 312
Query: 427 KRA-------------ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSK 473
RA + AG++ + + YA +V E E +++E+EN +
Sbjct: 313 GRAGLTADAQAVYDSMKEAGFKPTMKSHMLLLSSYAKAGKVTEAERLVREIENSGVKPDT 372
Query: 474 KTFWIMYYAYATCGQRRKVNQVLGLMCKN 502
F + AY G+ ++ +L M +
Sbjct: 373 FMFNSLLSAYGNSGRIDEMESLLESMVSS 401
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + P+V +N LI Y + W + E+ + +MK +P ++ +LL Y+
Sbjct: 74 LQGTMFKPDVGCFNMLIDAYGKSKQWREAEKTFHLMKDFQCLPTETSFNVLLAAYSRGVQ 133
Query: 312 LPRMEKIYELVK--HHVDGKEFPLIRAMICAYSK----CSVTDRIKKIEALMRLIPEKEY 365
L + EK++ +K ++ G +I + I Y+ + R+ + E R + ++
Sbjct: 134 LEKAEKLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGI 193
Query: 366 RPWLN--VLLIRVYAK-------EDCLEEMEKSI 390
P +N ++I +Y K +D M K++
Sbjct: 194 LPAVNTFTIMINIYGKAYYSDKADDLFRSMRKAL 227
>gi|297797974|ref|XP_002866871.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
gi|297312707|gb|EFH43130.1| EMB2453 [Arabidopsis lyrata subsp. lyrata]
Length = 561
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/305 (25%), Positives = 141/305 (46%), Gaps = 27/305 (8%)
Query: 78 RKDLTQTVSALRD------ELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG 131
R+ L + SA R+ L++ + D + + + LD+ + H F+ L ++LG
Sbjct: 54 RRKLAERESAERENRVLVRSLMSRISDKEPLVKTLDKYVKVVRCDH----CFL-LFEELG 108
Query: 132 SRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK- 188
+ LEV W ++Q Y P Y+K I G+ +A LF+E N +
Sbjct: 109 KSDKWLQCLEVFRWMQKQRWY-IP-DNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRP 166
Query: 189 TIGTYNALLGAYMYNGLSDKCQSL------FRDLKKEANISPSIVTYNTLISVFGRLLLV 242
YNAL+ A+++ DK ++L F +K P++VTYN L+ F + V
Sbjct: 167 DASVYNALITAHLHT--RDKAKALEKVRGYFDKMKGMERCQPNVVTYNILLRAFAQSGKV 224
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
D + A F+++ S +SP+V+T+N ++ Y M ++E + M++ PD T+ +L
Sbjct: 225 DQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVL 284
Query: 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE 362
+ Y +ME+ ++ + + P +MI Y K + D K E + + + +
Sbjct: 285 IDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMID---KAEWVFKKMND 341
Query: 363 KEYRP 367
Y P
Sbjct: 342 MNYMP 346
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ AY NG+ + +++ ++ P I+T+N LI +G+ + ME F+
Sbjct: 245 TFNGVMDAYGKNGMIKEMEAVLTRMRSN-ECKPDIITFNVLIDSYGKKQEFEKMEQTFKS 303
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ S P + T+N +I Y A M K E +++ M MP TY ++ Y + G+
Sbjct: 304 LMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMNDMNYMPSFITYECMIMMYGYCGS 363
Query: 312 LPRMEKIYELV 322
+ R +I+E V
Sbjct: 364 VSRAREIFEEV 374
>gi|224104097|ref|XP_002313317.1| predicted protein [Populus trichocarpa]
gi|222849725|gb|EEE87272.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 164/358 (45%), Gaps = 16/358 (4%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
AL++ R+Q Y P TK YTK + G+ + + LF + LK TI Y A
Sbjct: 98 ALKIFELLRKQHWY-EPRTKT-YTKLLMMLGKCRQPEEGSFLFEVMLSDGLKPTIDVYTA 155
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ AY +G DK S+ ++K + P + TY+ LI+ +L + + E+
Sbjct: 156 LVSAYGKSGQLDKAFSIVVEMKAISECKPDVYTYSILINCCIKLHRFELIRGILAEMSYL 215
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ + TYN +I GY A M+ ++E + M+++G +PD T+ ++ Y G + +
Sbjct: 216 GIECSTVTYNTIIDGYGKAKMFEEMENTLTDMIESGSSVPDLFTFNSIIGAYGSKGRIDK 275
Query: 315 MEKIY---ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL-- 369
MEK Y +L+ D K F + +I +Y K + +++ + + + ++ + P +
Sbjct: 276 MEKWYTEFQLMGLRQDIKTFNI---LIRSYGKAGMYGKMRSV---LEFMEKRFFSPSIVT 329
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
+ + I + K +E ME+ + TV +VS+Y + + K+ + +++
Sbjct: 330 HNIFIETFGKAGDIETMEEYFSKMKHLGIKPNTVTYC-SLVSAYSKAGHIMKVDSILRQV 388
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
E++ L ++ + Y +E+M + ME K TF M AY G
Sbjct: 389 ENSDVILDTPFFNCVISAYGRAGDIEKMSELFLGMEGRKCKPDSITFATMIQAYNAQG 446
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 87/170 (51%), Gaps = 1/170 (0%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+ I T+N L+ +Y G+ K +S+ ++K SPSIVT+N I FG+ ++ ME
Sbjct: 290 QDIKTFNILIRSYGKAGMYGKMRSVLEFMEKRF-FSPSIVTHNIFIETFGKAGDIETMEE 348
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
F ++K + PN TY L++ Y A KV+ I + ++ V+ DT + ++ Y
Sbjct: 349 YFSKMKHLGIKPNTVTYCSLVSAYSKAGHIMKVDSILRQVENSDVILDTPFFNCVISAYG 408
Query: 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357
+G++ +M +++ ++ + MI AY+ + + + +E +M
Sbjct: 409 RAGDIEKMSELFLGMEGRKCKPDSITFATMIQAYNAQGMIEAAQGMENMM 458
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 69/323 (21%), Positives = 109/323 (33%), Gaps = 76/323 (23%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F L+K+ P TY L+ + G+ + F+ + L P + Y L++ Y
Sbjct: 101 IFELLRKQHWYEPRTKTYTKLLMMLGKCRQPEEGSFLFEVMLSDGLKPTIDVYTALVSAY 160
Query: 272 MTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+ K I MKA PD TY +L+ +K H
Sbjct: 161 GKSGQLDKAFSIVVEMKAISECKPDVYTYSILINC---------------CIKLH----R 201
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI 390
F LIR ++ S + E +I Y K EEME ++
Sbjct: 202 FELIRGILAEMSYLGI-----------------ECSTVTYNTIIDGYGKAKMFEEMENTL 244
Query: 391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR--------LCRSLYH 442
D E +SV + I+ +Y +DK+ + + G R L RS +
Sbjct: 245 TDMIESGSSVPDLFTFNSIIGAYGSKGRIDKMEKWYTEFQLMGLRQDIKTFNILIRS--Y 302
Query: 443 SKMVMYASQRRV-----------------------------EEMESVLKEMENYKIDCSK 473
K MY R V E ME +M++ I +
Sbjct: 303 GKAGMYGKMRSVLEFMEKRFFSPSIVTHNIFIETFGKAGDIETMEEYFSKMKHLGIKPNT 362
Query: 474 KTFWIMYYAYATCGQRRKVNQVL 496
T+ + AY+ G KV+ +L
Sbjct: 363 VTYCSLVSAYSKAGHIMKVDSIL 385
>gi|359480144|ref|XP_002269420.2| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Vitis vinifera]
gi|297744374|emb|CBI37344.3| unnamed protein product [Vitis vinifera]
Length = 497
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 137/311 (44%), Gaps = 9/311 (2%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y ALL AY +GL DK SL +K + P + TY+ LI +++ D + ++
Sbjct: 176 YTALLSAYSRSGLFDKAFSLLEKMKNTPDCQPDVHTYSVLIKSCLQVVAFDKVPVLLSDM 235
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + PN TYN LI Y A + ++E + +M++ G PD T LR + SG
Sbjct: 236 ANQGIKPNTVTYNTLIDAYGKAKRFAEMESTLLEMLREGKCEPDVWTMNSTLRAFGSSGQ 295
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ MEK YE K G E P I+ ++ +K+ A+M + +K + W V
Sbjct: 296 IETMEKCYE--KFQSAGIE-PNIKTFNILLDSYGKAEKYEKMSAVMEYM-QKYHFSWTIV 351
Query: 372 ---LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
++I + + L++ME + + V + +V +Y R +K+ ++
Sbjct: 352 TYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC-SLVRAYGRAGKAEKIGGVLRF 410
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
E++ L ++ + Y EM+ VL+ M+ K T+ M AY G
Sbjct: 411 IENSDVMLDIVFFNCLVDAYGRLGCFAEMKGVLEMMKKKGCKPDKITYRTMIKAYKIGGM 470
Query: 489 RRKVNQVLGLM 499
++ GLM
Sbjct: 471 TSCAKELQGLM 481
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 3/197 (1%)
Query: 166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
+G+I ++ + F A + I T+N LL +Y +K ++ ++K + S +
Sbjct: 293 SGQIETMEKCYEKFQSAGIE--PNIKTFNILLDSYGKAEKYEKMSAVMEYMQK-YHFSWT 349
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
IVTYN +I FGR + ME F+ ++ + P+ T L+ Y A K+ + +
Sbjct: 350 IVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYGRAGKAEKIGGVLR 409
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
++ VM D + L+ Y G M+ + E++K + R MI AY
Sbjct: 410 FIENSDVMLDIVFFNCLVDAYGRLGCFAEMKGVLEMMKKKGCKPDKITYRTMIKAYKIGG 469
Query: 346 VTDRIKKIEALMRLIPE 362
+T K+++ LMR+ E
Sbjct: 470 MTSCAKELQGLMRMPDE 486
>gi|15230719|ref|NP_187294.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207273|sp|Q9SQU6.1|PP216_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g06430, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2750; Flags: Precursor
gi|6437546|gb|AAF08573.1|AC011623_6 unknown protein [Arabidopsis thaliana]
gi|20466300|gb|AAM20467.1| unknown protein [Arabidopsis thaliana]
gi|30387593|gb|AAP31962.1| At3g06430 [Arabidopsis thaliana]
gi|332640870|gb|AEE74391.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 486
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 91/387 (23%), Positives = 166/387 (42%), Gaps = 16/387 (4%)
Query: 115 RRHSNGY--AFVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN 170
R +NG+ E + L ++ + ALEV + R Q Y + Y K + G+
Sbjct: 81 RSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQP--KEGTYMKLLVLLGKSG 138
Query: 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
+ A LF E + L+ T+ Y ALL AY + L D S+ +K P + TY
Sbjct: 139 QPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTY 198
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMK 288
+TL+ D +++ ++E+ + ++PN T N +++GY + ++E++ M+
Sbjct: 199 STLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQMEKVLSDMLV 258
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+ PD T ++L + + G + ME YE ++ E +I +Y K + D
Sbjct: 259 STACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYD 318
Query: 349 RIKKIEALMRLIPEKEYRPWLNVL---LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRI 405
++ + MR + E+ PW +I +A + ME + D + +
Sbjct: 319 KMSSVMEYMRKL---EF-PWTTSTYNNIIEAFADVGDAKNMELTF-DQMRSEGMKADTKT 373
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
C+++ Y K+ + V+ A + Y++ + A + EME V M+
Sbjct: 374 FCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYIRMK 433
Query: 466 NYKIDCSKKTFWIMYYAYATCGQRRKV 492
+ C +TF IM AY G K+
Sbjct: 434 ERQCVCDSRTFEIMVEAYEKEGMNDKI 460
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 131/320 (40%), Gaps = 40/320 (12%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
GTY LL +G ++ Q LF ++ +E + P++ Y L++ + R L+D +
Sbjct: 125 GTYMKLLVLLGKSGQPNRAQKLFDEMLEEG-LEPTVELYTALLAAYTRSNLIDDAFSILD 183
Query: 251 EIKD-SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
++K P+VFTY+ L+ + A + V+ +Y+ M + P+T T ++L GY
Sbjct: 184 KMKSFPQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRV 243
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G +MEK+ L ++ K V W
Sbjct: 244 GRFDQMEKV--------------LSDMLVSTACKPDV---------------------WT 268
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
+++ V+ ++ ME S + F + R ++ SY + DK+++ ++
Sbjct: 269 MNIILSVFGNMGKIDMME-SWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYM 327
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
+ S Y++ + +A + ME +M + + KTF + YA G
Sbjct: 328 RKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLF 387
Query: 490 RKVNQVLGLMCKNGYDVPVN 509
KV + L K +++P N
Sbjct: 388 HKVISSVQLAAK--FEIPEN 405
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 88/192 (45%), Gaps = 8/192 (4%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G + +D+ + + N ++ T+N L+G+Y + DK S+ ++K +
Sbjct: 277 GNMGKIDMMESWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMRK-LEFPWT 335
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
TYN +I F + +ME F +++ + + T+ LI GY A ++ KV Q
Sbjct: 336 TSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKADTKTFCCLINGYANAGLFHKVISSVQ 395
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH---VDGKEFPLIRAMICAYS 342
+ + +T Y ++ A + +L ME++Y +K D + F + M+ AY
Sbjct: 396 LAAKFEIPENTAFYNAVISACAKADDLIEMERVYIRMKERQCVCDSRTFEI---MVEAYE 452
Query: 343 KCSVTDRIKKIE 354
K + D+I +E
Sbjct: 453 KEGMNDKIYYLE 464
>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 139/316 (43%), Gaps = 42/316 (13%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I T+N LL + NG+ + +F+++K+ A P TYNTLIS + R D +
Sbjct: 279 IVTWNTLLAVFGQNGMDSEVSGVFKEMKR-AGFVPERDTYNTLISAYSRCGSFDQAMDIY 337
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + ++ ++P++ TYN ++A +W + E+I+ MK G P+ TY LL YA+
Sbjct: 338 KRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANG 397
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
+ RM + E + V L++ ++ SKC D + + E + K + P L
Sbjct: 398 KEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKC---DLLVEAEVAFLELKRKGFSPDL 454
Query: 370 NVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
+ L ++ +Y + + +++ NF+
Sbjct: 455 STLNAMLSIYGRRQMFTK---------------------------------TNEILNFMN 481
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+G+ + Y+S M M++ E E VLKE+ I ++ + +AY G
Sbjct: 482 E---SGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNG 538
Query: 488 QRRKVNQVLGLMCKNG 503
+ ++ +++ M ++G
Sbjct: 539 RMKEASRIFSEMRESG 554
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/329 (24%), Positives = 146/329 (44%), Gaps = 55/329 (16%)
Query: 180 AEAANKHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A A K +K++G TYNALL Y + + + + R+++ SPSIVTYN+LI
Sbjct: 123 AAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNG-CSPSIVTYNSLI 181
Query: 234 SVFGR-LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
S + R LL + ME Q + + ++ +VFTY L++G++ A ++ M+A
Sbjct: 182 SAYARDGLLKEAMELKNQMV-EGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGC 240
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352
P+ T+ L++ + + G M K++E +K+ C V D +
Sbjct: 241 KPNICTFNALIKMHGNRGKFAEMMKVFEEIKN------------------SCCVPDIV-- 280
Query: 353 IEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV---RIMRCI 409
W N LL V+ + M+ ++ F+ V +
Sbjct: 281 --------------TW-NTLLA-VFGQNG----MDSEVSGVFKEMKRAGFVPERDTYNTL 320
Query: 410 VSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI 469
+S+Y RC + D+ + KR AG S Y++ + A E+ E + EM++ +
Sbjct: 321 ISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRC 380
Query: 470 DCSKKTFWIMYYAYATCGQRRKVNQVLGL 498
++ T+ + +AYA +++ ++L L
Sbjct: 381 KPNELTYCSLLHAYA---NGKEIGRMLAL 406
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 78/152 (51%), Gaps = 9/152 (5%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLKTIG----TYNALLGAYMYNGLSDKCQSLFRDLKK 218
I G+ V +AA L + H G Y +L+ A + NG + +F+ +++
Sbjct: 5 ISMLGKEGKVSVAASLLNDL---HKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEE 61
Query: 219 EANISPSIVTYNTLISVFGRLLLV-DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E P+++TYN +++V+G++ + + ++ F+ +K++ + P+ +TYN LI +
Sbjct: 62 EG-CKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLH 120
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ +++ MK+ +PD TY LL Y S
Sbjct: 121 EEAAAVFKDMKSMGFVPDKVTYNALLDVYGKS 152
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ TYN+L+ + + ++ + + +++ + I P ++YNT+I + R +
Sbjct: 488 SLATYNSLMYMHSRSENFERSEEVLKEILAKG-IKPDTISYNTVIFAYCRNGRMKEASRI 546
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
F E+++S L P+V TYN +A Y M+ ++ + M P+ NTY ++ GY
Sbjct: 547 FSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGY 604
>gi|357479161|ref|XP_003609866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510921|gb|AES92063.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 496
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 85/361 (23%), Positives = 152/361 (42%), Gaps = 12/361 (3%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
ALE L+ R Q+ Y + Y K I G+ A LF + T Y A
Sbjct: 121 ALETLDMLREQSFYQP--REGTYMKLIVLLGKSGQPQRAHQLFTAMIEEGCDPTPELYTA 178
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
LL AY + + D+ S+ ++K P + TY+TLI + + +E ++E+
Sbjct: 179 LLAAYCRSNMIDEALSILDEMKNHPLCQPDVFTYSTLIKACVDIFKFELIELLYEEMAQR 238
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ-MMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
++ PN T N ++ GY A M+ ++E++ M+++ PD T ++ + + G +
Sbjct: 239 SIMPNTVTQNIVLNGYGKAGMFDQMEKVLSGMLQSADCKPDVWTMNTIIGVFGNMGQIDM 298
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL-- 372
MEK YE ++ E +I +Y K + D++ + MR K PW
Sbjct: 299 MEKWYEKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYMR----KLQFPWTTSTYN 354
Query: 373 -LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
+I +A+ + ME + N T + C++ + K+ + V+ A
Sbjct: 355 NVIEAFAEAGDAKNMEYTFNQMRSEGMRADT-KTFCCLIKGFANAGLFHKVISSVQLAAK 413
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
L + Y++ + A + EM+ V M++ + T+ IM AY G K
Sbjct: 414 LEIPLNTAFYNAVLSACAKAEDLMEMDRVFMRMKDTQCPLDDTTYSIMVEAYRKEGMNDK 473
Query: 492 V 492
+
Sbjct: 474 I 474
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 129/320 (40%), Gaps = 40/320 (12%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
GTY L+ +G + LF + +E P+ Y L++ + R ++D +
Sbjct: 139 GTYMKLIVLLGKSGQPQRAHQLFTAMIEEG-CDPTPELYTALLAAYCRSNMIDEALSILD 197
Query: 251 EIKDSNL-SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
E+K+ L P+VFTY+ LI + + + +E +Y+ M +MP+T T ++L GY +
Sbjct: 198 EMKNHPLCQPDVFTYSTLIKACVDIFKFELIELLYEEMAQRSIMPNTVTQNIVLNGYGKA 257
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G +MEK+ + D K P + W
Sbjct: 258 GMFDQMEKVLSGMLQSADCK--PDV---------------------------------WT 282
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
+I V+ ++ MEK + F + R ++ SY + DK+++ ++
Sbjct: 283 MNTIIGVFGNMGQIDMMEKWY-EKFRNFGIEPETRTFNILIGSYGKKRMYDKMSSVMEYM 341
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
+ S Y++ + +A + ME +M + + KTF + +A G
Sbjct: 342 RKLQFPWTTSTYNNVIEAFAEAGDAKNMEYTFNQMRSEGMRADTKTFCCLIKGFANAGLF 401
Query: 490 RKVNQVLGLMCKNGYDVPVN 509
KV + L K ++P+N
Sbjct: 402 HKVISSVQLAAK--LEIPLN 419
>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 794
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 93/357 (26%), Positives = 162/357 (45%), Gaps = 14/357 (3%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN--NVDLAADLFAEAANKHLK-T 189
R L + L +R+ G + + YT +G +N +LA ++F E K
Sbjct: 332 RGGLLEDALVLKRKMVDKG--IKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPN 389
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I T+NAL+ Y G ++ +F+++K SP IVT+NTL++VFG+ + + F
Sbjct: 390 ICTFNALIKMYGDRGKFEEMVKVFKEIKV-CKCSPDIVTWNTLLAVFGQNGMDSEVSGVF 448
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E+K S +P T+N LI+ Y + + Y+ M V PD +TY +L A
Sbjct: 449 EEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARG 508
Query: 310 GNLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
G + EK+ +K DG P +++ AY+ +R+ + + K +
Sbjct: 509 GLWEQSEKVLAEMK---DGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTIKTHA 565
Query: 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L L++ V +K D L E E++ + F + V ++S Y R V K +
Sbjct: 566 VLLKTLVL-VNSKVDLLVETERAFLE-FRKRGISPDVTTSNAMLSIYGRKKMVPKANEIL 623
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
+G L + Y+S M MY+ + E + +E+ + I+ ++ I+ YAY
Sbjct: 624 NFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAY 680
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 144/327 (44%), Gaps = 49/327 (14%)
Query: 175 AADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKK-EAN-ISPSIVTYNT 231
A DLF E + TYNALL Y G S + + LK+ E+N PS+VTYN+
Sbjct: 269 ALDLFEEIKVAGFRPDAVTYNALLDVY---GKSRRPKEAMEVLKQMESNSFRPSVVTYNS 325
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L+S + R L++ +++ D + P+V+TY L++G++ A E+++ M+
Sbjct: 326 LVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVG 385
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351
P+ T+ L++ Y G M K+++ +K +C KCS
Sbjct: 386 CKPNICTFNALIKMYGDRGKFEEMVKVFKEIK--------------VC---KCS------ 422
Query: 352 KIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH--KTSVTTVR-IMRC 408
+ W N LL V+ + M+ ++ FE ++ R
Sbjct: 423 -----------PDIVTW-NTLLA-VFGQNG----MDSEVSGVFEEMKRSRFAPERDTFNT 465
Query: 409 IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK 468
++S+Y RC + D+ KR AG S Y++ + A E+ E VL EM++
Sbjct: 466 LISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGG 525
Query: 469 IDCSKKTFWIMYYAYATCGQRRKVNQV 495
++ T+ + +AYA + ++N +
Sbjct: 526 CKPNEVTYSSLLHAYANGREVERMNAL 552
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/375 (20%), Positives = 157/375 (41%), Gaps = 23/375 (6%)
Query: 126 LMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF--AE 181
++K LG ++ LAL + ++ R + + + + G+ V AA L E
Sbjct: 112 IIKGLGFNNKFDLALSLFDFIRTRNDRVSLLNGSVIAVIVSILGKTGRVSRAASLLHNLE 171
Query: 182 AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241
A + G Y +L+ AY N +F +K E P+++TYN +++V+G++ +
Sbjct: 172 ADGFEVDVYG-YTSLITAYANNKKYRDALKVFGKMK-EVGCEPTLITYNAILNVYGKMGM 229
Query: 242 V-DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
+ A Q++K L+P++ TYN LI+ ++ + ++++ +K PD TY
Sbjct: 230 PWAKIIALVQDMKCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYN 289
Query: 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALM 357
LL Y S R ++ E++K P + +++ AY + + ++ L
Sbjct: 290 ALLDVYGKS---RRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGL---LEDALVLK 343
Query: 358 RLIPEKEYRP----WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY 413
R + +K +P + +L V A + EE+ + + + ++ Y
Sbjct: 344 RKMVDKGIKPDVYTYTTLLSGFVNAGK---EELAMEVFEEMRKVGCKPNICTFNALIKMY 400
Query: 414 FRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSK 473
+++ K + +++ + ++ E+ V +EM+ + +
Sbjct: 401 GDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPER 460
Query: 474 KTFWIMYYAYATCGQ 488
TF + AY CG
Sbjct: 461 DTFNTLISAYGRCGS 475
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 61/113 (53%), Gaps = 5/113 (4%)
Query: 189 TIGTYNALLGAYMYNGLSD--KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
++ +YN+L+ YMY+ + K + +FR++ + I P +++YN +I + R ++D +
Sbjct: 634 SLTSYNSLM--YMYSRTENFHKSEQIFREIL-DKGIEPDVISYNIVIYAYCRNDMMDEAK 690
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
+E+K P+V TYN IA Y M+ + ++ + M P+ NTY
Sbjct: 691 RIIEEMKVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNTY 743
>gi|125583699|gb|EAZ24630.1| hypothetical protein OsJ_08397 [Oryza sativa Japonica Group]
Length = 482
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 84/366 (22%), Positives = 162/366 (44%), Gaps = 31/366 (8%)
Query: 140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLG 198
V W ++Q Y Y+K I GR + +A LF++ N + YN+L+G
Sbjct: 94 VFRWMQKQRWYVA--DNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLIG 151
Query: 199 AYMYNGLSDKCQSL------FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
++++ DK ++L F +K P+IVTYN L+ F + ++ F+++
Sbjct: 152 THLHS--RDKSKALAKALGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDL 209
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+S +SP+++TYN ++ Y M ++E + MK+ PD T+ +L+ Y
Sbjct: 210 DESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRMKSNQCRPDVITFNILIDSYGRKQAF 269
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLN 370
+ME++++ + + P +MI Y K + + K E ++ + E ++P
Sbjct: 270 DKMEQVFKSLLRSKEKPTHPTFNSMITNYGKARLRE---KAECVLDKMTEMGFKPNYVTQ 326
Query: 371 VLLIRVYAKEDCL-------EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLA 423
LI +YA DC+ +E+ S N+ H +SV + C+ + + L
Sbjct: 327 ECLIMMYAYCDCVSRARQIFDELVSSQNNV--HLSSVNAMLDAYCMNGLPMEADQL--LD 382
Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
+ +K+ + LY + Y + ++ +LK M + I +KK F A+
Sbjct: 383 SVIKKGAVPSASTYKLLYKA----YTKANDKKLIQKLLKRMNSQGIVPNKKFFLDALEAF 438
Query: 484 ATCGQR 489
++
Sbjct: 439 GNTDKK 444
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/323 (21%), Positives = 125/323 (38%), Gaps = 63/323 (19%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+FR ++K+ Y+ LISV GR + F ++++S P+ YN LI +
Sbjct: 94 VFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYNSLIGTH 153
Query: 272 M----TAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
+ + K ++ MK P+ TY +LLR +A +G+ +++ +++ +
Sbjct: 154 LHSRDKSKALAKALGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESP 213
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM 386
+ ++ AY K + I ++E+++ + + RP
Sbjct: 214 VSPDIYTYNGVMDAYGKNGM---ITEMESVLVRMKSNQCRP------------------- 251
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446
V T I+ + SY R A DK+ K + + ++S +
Sbjct: 252 ------------DVITFNIL---IDSYGRKQAFDKMEQVFKSLLRSKEKPTHPTFNSMIT 296
Query: 447 MYASQRRVEEMESVLKEME--NYKIDCSKKTFWIMYYAYATCGQRRK------------- 491
Y R E+ E VL +M +K + + IM YAY C R +
Sbjct: 297 NYGKARLREKAECVLDKMTEMGFKPNYVTQECLIMMYAYCDCVSRARQIFDELVSSQNNV 356
Query: 492 ----VNQVLGLMCKNGYDVPVNA 510
VN +L C NG +P+ A
Sbjct: 357 HLSSVNAMLDAYCMNG--LPMEA 377
>gi|357458279|ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488468|gb|AES69671.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 511
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 87/362 (24%), Positives = 159/362 (43%), Gaps = 12/362 (3%)
Query: 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-T 189
G + + AL + R Q Y P + YTK + + A+ L+ + LK T
Sbjct: 109 GCQWQNALMIFELLRNQYWY-EPRC-QTYTKLLMMLSKCKQPKEASQLYETMLFEGLKPT 166
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ AL+ AY +GL S D+K + P + TY+ LIS + D +E
Sbjct: 167 VDVLTALVSAYGQSGLFRHAFSTIEDMKSVVDCKPDVYTYSVLISCCAKFRRFDLIERVL 226
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE-EIYQMMKAGPVMPDTNTYLLLLRGYAH 308
++ S + N TYN +I GY A M+ ++E + M++ PD T L+ Y +
Sbjct: 227 ADMSYSGIECNSVTYNSIIDGYGKAGMFEQMENSLTDMIENENCQPDVFTLNSLIGSYGN 286
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G + +MEK Y+ + + MI +Y K + D++K + M + + + P
Sbjct: 287 GGKIDKMEKWYDEFQLMSIKPDIKTFNMMIKSYGKAGMYDKMKSV---MDFMERRFFAPT 343
Query: 369 LNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC-IVSSYFRCNAVDKLANF 425
+ +I VY K +E+M+K + +H + + C +V++Y + + K+ +
Sbjct: 344 IVTYNTVIEVYGKAGEIEKMDKHFKN-MKH-IGMKPNSVTYCSLVNAYSKAGLIRKIDSI 401
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
++ E++ L ++ + Y +++M + M K + + TF M AY T
Sbjct: 402 LRHVENSDVILDTPFFNCIISAYGQVGDLKKMGELFLAMRARKCEPDRTTFTCMIQAYNT 461
Query: 486 CG 487
G
Sbjct: 462 QG 463
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 99/192 (51%), Gaps = 3/192 (1%)
Query: 166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G+I+ ++ D F + K I T+N ++ +Y G+ DK +S+ D + +P+
Sbjct: 287 GGKIDKMEKWYDEFQLMSIK--PDIKTFNMMIKSYGKAGMYDKMKSVM-DFMERRFFAPT 343
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
IVTYNT+I V+G+ ++ M+ F+ +K + PN TY L+ Y A + K++ I +
Sbjct: 344 IVTYNTVIEVYGKAGEIEKMDKHFKNMKHIGMKPNSVTYCSLVNAYSKAGLIRKIDSILR 403
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
++ V+ DT + ++ Y G+L +M +++ ++ + MI AY+
Sbjct: 404 HVENSDVILDTPFFNCIISAYGQVGDLKKMGELFLAMRARKCEPDRTTFTCMIQAYNTQG 463
Query: 346 VTDRIKKIEALM 357
+T+ K +E +M
Sbjct: 464 ITEAAKNLETMM 475
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/288 (20%), Positives = 118/288 (40%), Gaps = 47/288 (16%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS-NLSPNVFTYNYLIAG 270
LF LK P++ L+S +G+ L H + +++K + P+V+TY+ LI+
Sbjct: 159 LFEGLK------PTVDVLTALVSAYGQSGLFRHAFSTIEDMKSVVDCKPDVYTYSVLISC 212
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+ +E + M + ++ TY ++ GY +G +ME
Sbjct: 213 CAKFRRFDLIERVLADMSYSGIECNSVTYNSIIDGYGKAGMFEQMEN------------- 259
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEK 388
S+TD +I + +P + L LI Y +++MEK
Sbjct: 260 --------------SLTD----------MIENENCQPDVFTLNSLIGSYGNGGKIDKMEK 295
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
D F+ + ++ ++ SY + DK+ + + E + Y++ + +Y
Sbjct: 296 WY-DEFQLMSIKPDIKTFNMMIKSYGKAGMYDKMKSVMDFMERRFFAPTIVTYNTVIEVY 354
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
+E+M+ K M++ + + T+ + AY+ G RK++ +L
Sbjct: 355 GKAGEIEKMDKHFKNMKHIGMKPNSVTYCSLVNAYSKAGLIRKIDSIL 402
>gi|414864365|tpg|DAA42922.1| TPA: hypothetical protein ZEAMMB73_846849 [Zea mays]
Length = 485
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 161/359 (44%), Gaps = 18/359 (5%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
ALE+ R+Q Y P + + Y + + G+ AA LF E ++ L+ T Y A
Sbjct: 108 ALEIFELLRKQHWY-EPRS-QTYARLLMMLGKCRQPGPAAGLFREMLSERLRPTADVYTA 165
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+GAY Y+GL + + +K A+ P T++ L+ + D + A E+
Sbjct: 166 LIGAYGYSGLLEHALAAVEQMKGAADCKPDGYTFSVLVDCCAKSRRFDLIPAVLDEMSYL 225
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVE-EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ N +N +I GY A M+ ++E + M+++G +PD T ++ Y + G
Sbjct: 226 GIECNSVIHNAIIDGYGKAAMFEEMEGALSTMLESGSNVPDIYTMNSVVGAYGNHGRTDE 285
Query: 315 MEKIY---ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
MEK Y +L+ D K F + MI +Y K + K+ ++ R + ++ + P
Sbjct: 286 MEKSYSEFQLMGVEPDTKTFNI---MIRSYGKAGM---YVKMMSIFRYMKKRFFSPTAVT 339
Query: 372 L--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC-IVSSYFRCNAVDKLANFVKR 428
+I + + +E+ME V I C +V+ Y + +DK+A +++
Sbjct: 340 FNTVIECFGRAGDIEKMEYYFR--LMKIQGVKPNPITYCSLVNGYSKAGLLDKVAGVIRQ 397
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
E+ L ++ + YA ++ ME +L+ M+ + + T+ M AY G
Sbjct: 398 TENTNVVLDTPFFNCVISAYAKSGDIKIMEEMLQLMKEKRCKPDRITYATMIQAYTAHG 456
>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/325 (23%), Positives = 143/325 (44%), Gaps = 15/325 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T + +L A GL D+ + F LK E P VTYN L+ VFG+ + + E
Sbjct: 295 TCSTVLSACGREGLIDEAREFFSGLKSEG-YKPGTVTYNALLHVFGKAGIFSEALSVLSE 353
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++++N P+ TYN ++A Y+ A + + M + +MP+ TY ++ Y G+
Sbjct: 354 MEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGD 413
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ + ++++ + A++ K S+++ + KI M+L N
Sbjct: 414 IDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNT 473
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVT---TVRIMRCIVSSYFRCNAVDKLANFVKR 428
+L K M K +N F + ++S+Y RC + + A +
Sbjct: 474 MLAMCGKK-----GMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEE 528
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
AG+ C + Y++ + A + + ESV+ +M N S+ ++ +M ++YA G
Sbjct: 529 MIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGN 588
Query: 489 RRKVNQVLGLMCKNGYDVPVNAFPS 513
+ + ++ K+ YD + FPS
Sbjct: 589 VKGIE----MIEKSIYDGDI--FPS 607
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 89/386 (23%), Positives = 164/386 (42%), Gaps = 57/386 (14%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I GR+ ++D A ++F + + + TYNA+LG LS++ + +K
Sbjct: 401 YTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMK 460
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY------ 271
SP+ +T+NT++++ G+ + ++ F+E+K+ P+ T+N LI+ Y
Sbjct: 461 LNG-CSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSN 519
Query: 272 -----MTAWM------------------------WGKVEEIYQMMKAGPVMPDTNTYLLL 302
M M W E + M+ P +Y L+
Sbjct: 520 NDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETSYSLM 579
Query: 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKC-SVTDRIKKIEALMR 358
+ YA GN+ +E I + + DG FP L+R ++ A KC S+T + +AL +
Sbjct: 580 VHSYAKGGNVKGIEMIEKSI---YDGDIFPSWMLLRTLVLANFKCRSLTGMERAFQALQK 636
Query: 359 LIPEKEYRPWLNVL--LIRVYAKE---DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY 413
Y+P L + ++ ++AK D EM + I+DA VT +M Y
Sbjct: 637 ----HGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRLIHDAGLQPDLVTHNSLM----DMY 688
Query: 414 FRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSK 473
R K ++ +++G + Y++ + + + ++E +L EM + +
Sbjct: 689 ARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRILSEMTSIGVGPCI 748
Query: 474 KTFWIMYYAYATCGQRRKVNQVLGLM 499
T+ YA G ++N V+ M
Sbjct: 749 FTYNTFISGYAAQGMFTEINDVISYM 774
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N+L+ Y G K + + R L+ P +V+YNT+I F R L+ E
Sbjct: 680 THNSLMDMYARGGDCWKAEEVLRMLQTSGG-KPDLVSYNTVIKGFCRKGLMQEGIRILSE 738
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
+ + P +FTYN I+GY M+ ++ ++ M P+ TY ++ GY
Sbjct: 739 MTSIGVGPCIFTYNTFISGYAAQGMFTEINDVISYMIVHNCRPNELTYKIVADGY 793
>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 819
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 96/382 (25%), Positives = 168/382 (43%), Gaps = 22/382 (5%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TI 190
+R + E + + + A GT YT + R V+ A ++F E N K I
Sbjct: 360 ARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNI 419
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
T+NA + Y G +F ++ +SP IVT+NTL++VFG+ + + F+
Sbjct: 420 CTFNAFIKMYGNRGKFVDMMKIFDEINV-CGLSPDIVTWNTLLAVFGQNGMDSEVSGVFK 478
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+K + P T+N LI+ Y + + +Y+ M V PD +TY +L A G
Sbjct: 479 EMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGG 538
Query: 311 NLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY-- 365
+ EK+ ++ DG+ P +++ AY+ K+I LM + E+ Y
Sbjct: 539 MWEQSEKVLAEME---DGRCKPNELTYCSLLHAYANG------KEI-GLMHSLAEEVYSG 588
Query: 366 ----RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
R L L+ V +K D L E E++ ++ E S + + +VS Y R V K
Sbjct: 589 VIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFS-PDITTLNSMVSIYGRRQMVGK 647
Query: 422 LANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYY 481
+ + G+ + Y+S M M++ + E +L+E+ I ++ + Y
Sbjct: 648 ANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIY 707
Query: 482 AYATCGQRRKVNQVLGLMCKNG 503
AY + R +++ M +G
Sbjct: 708 AYCRNTRMRDASRIFSEMRDSG 729
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 125/297 (42%), Gaps = 11/297 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ L + +F ++K A S VTYN L+ V+G+ E
Sbjct: 281 TYNTLITCCKRGSLHQEAAQVFEEMKA-AGFSHDKVTYNALLDVYGKSHRPKEAMKVLNE 339
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + SP++ TYN LI+ Y M + E+ M PD TY LL G+ +G
Sbjct: 340 MELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGK 399
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAY-SKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+ I+E +++ A I Y ++ D +K + + + W N
Sbjct: 400 VESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTW-N 458
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV---RIMRCIVSSYFRCNAVDKLANFVK 427
LL V+ + M+ ++ F+ V ++S+Y RC + ++ +
Sbjct: 459 TLLA-VFGQNG----MDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYR 513
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
R AG S Y++ + A E+ E VL EME+ + ++ T+ + +AYA
Sbjct: 514 RMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYA 570
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/397 (19%), Positives = 163/397 (41%), Gaps = 43/397 (10%)
Query: 115 RRHSNGYAFVELMKQLGSRPR--LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV 172
+ S + +K LG + LAL +W +Q Y + + I G+ V
Sbjct: 130 KPESTSSELLAFLKGLGFHKKFDLALCAFDWFMKQKDYQSMLDNSVIAIVISMLGKEGRV 189
Query: 173 DLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
AA+LF + +Y +L+ A+ +G + ++F+ +++E P+++TYN
Sbjct: 190 SSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEG-CKPTLITYNV 248
Query: 232 LISVFGRLLLV-DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
+++VFG++ + + + +++K ++P+ +TYN LI + + ++++ MKA
Sbjct: 249 ILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAA 308
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI 350
D TY LL Y S K+ ++ + ++I AY++ + D
Sbjct: 309 GFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEA 368
Query: 351 KKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV 410
+++ M EK +P D F + T ++
Sbjct: 369 MELKNQM---AEKGTKP------------------------DVFTYTT----------LL 391
Query: 411 SSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID 470
S + R V+ N + +AG + +++ + MY ++ + +M + E+ +
Sbjct: 392 SGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLS 451
Query: 471 CSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVP 507
T+ + + G +V+ V M + G+ VP
Sbjct: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGF-VP 487
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 189 TIGTYNALLGAYMYNGLSD--KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
++ TYN+L+ YM++ +D K + + R++ + I P I++YNT+I + R +
Sbjct: 663 SMATYNSLM--YMHSRSADFGKSEEILREILAKG-IKPDIISYNTVIYAYCRNTRMRDAS 719
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
F E++DS + P+V TYN I Y M+ + + + M P+ NTY ++ GY
Sbjct: 720 RIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGY 779
>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 141/316 (44%), Gaps = 42/316 (13%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I T+N LL + NG+ + +F+++K+ P TYNTLIS + R D A +
Sbjct: 279 IVTWNTLLAVFGQNGMDSEVSGVFKEMKR-VGFVPERDTYNTLISAYSRCGSFDQAMAMY 337
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + D+ ++P++ TYN ++A +W + E+I M+ G P+ T+ LL YA+
Sbjct: 338 KRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANG 397
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
+ RM + E + V L++ ++ SKC D + + E + K + P L
Sbjct: 398 KEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKC---DLLLEAERAFLELKRKGFSPDL 454
Query: 370 NVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
+ L +I +Y + R +V+ +++ NF+K
Sbjct: 455 STLNAMIAIYGR---------------------------RQMVTK------TNEILNFMK 481
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+G+ + Y+S M M++ E E VLKE+ I ++ + +AY G
Sbjct: 482 E---SGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAYCRNG 538
Query: 488 QRRKVNQVLGLMCKNG 503
+ ++ + + M ++G
Sbjct: 539 RMKEASHIFSEMRESG 554
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 144/336 (42%), Gaps = 59/336 (17%)
Query: 176 ADLFAEAAN--KHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKK-EAN-ISPS 225
L+ EAA + +K++G TYN LL Y G S + + L++ E N SPS
Sbjct: 117 GSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVY---GKSRRIKEAIEVLREMEVNGCSPS 173
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
IVTYN+LIS + R L++ ++ + + +VFTY +++G++ +++
Sbjct: 174 IVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFE 233
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
M+ P+ T+ L++ + + G M K++E +K IC C
Sbjct: 234 EMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIK--------------IC----CC 275
Query: 346 VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV-- 403
V D + W N LL V+ + M+ ++ F+ V V
Sbjct: 276 VPDIV----------------TW-NTLL-AVFGQNG----MDSEVSGVFKEMKRVGFVPE 313
Query: 404 -RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
++S+Y RC + D+ KR G S Y++ + A E+ E +L
Sbjct: 314 RDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILA 373
Query: 463 EMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL 498
EM++ ++ T + +AYA +++ ++L L
Sbjct: 374 EMQDGMCKPNELTHCSLLHAYA---NGKEIGRMLAL 406
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 94/185 (50%), Gaps = 7/185 (3%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
I G+ V +AA L + + Y +L+ A + NG + +F+ +++E
Sbjct: 5 INMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEEG- 63
Query: 222 ISPSIVTYNTLISVFGRLLLV-DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
P+++TYN +++V+G++ + + + F+ +K++ + P+ +TYN LI ++ +
Sbjct: 64 CKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYEEA 123
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI--RAMI 338
+++ MK+ +PD TY LL Y S + E I L + V+G ++ ++I
Sbjct: 124 AAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIK--EAIEVLREMEVNGCSPSIVTYNSLI 181
Query: 339 CAYSK 343
AY++
Sbjct: 182 SAYAR 186
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 7/121 (5%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLLLVDHM 245
++ TYN+L+ + + ++ + + +++ + I P I++YNT+I + GR+ H+
Sbjct: 488 SLATYNSLMYMHSQSENFERSEEVLKEILAKG-IKPDIISYNTVIFAYCRNGRMKEASHI 546
Query: 246 EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
F E+++S L P+V TYN +A Y M+ + ++ M P+ NTY ++ G
Sbjct: 547 ---FSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVVCYMIKHGCKPNQNTYNSVIDG 603
Query: 306 Y 306
Y
Sbjct: 604 Y 604
>gi|334187332|ref|NP_001190970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332661695|gb|AEE87095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 510
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 96/449 (21%), Positives = 184/449 (40%), Gaps = 62/449 (13%)
Query: 78 RKDLTQTVSALRD------ELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG 131
R+ L + SA R+ L++ + D + + + LD+ + H F+ L ++LG
Sbjct: 54 RRKLAERESAERENRVLVRSLMSRISDREPLVKTLDKYVKVVRCDH----CFL-LFEELG 108
Query: 132 SRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT 189
+ LEV W ++Q Y P Y+K I G+ +A LF+E N +
Sbjct: 109 KSDKWLQCLEVFRWMQKQRWY-IP-DNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRP 166
Query: 190 IGT-YNALLGAYMYNGLSDKCQSL------FRDLKKEANISPSIVTYNTLISVFGRLLLV 242
+ YNAL+ A+++ DK ++L +K P++VTYN L+ F + V
Sbjct: 167 DASVYNALITAHLHT--RDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKV 224
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
D + A F+++ S +SP+V+T+N ++ Y M ++E + M++ PD T+ +L
Sbjct: 225 DQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVL 284
Query: 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE 362
+ Y +ME+ ++ + + P +MI Y K + D+ +
Sbjct: 285 IDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAE----------- 333
Query: 363 KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
W+ K +ND + + C++ Y C +V +
Sbjct: 334 -----WVF-----------------KKMNDM----NYIPSFITYECMIMMYGYCGSVSRA 367
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482
+ + L S ++ + +Y E + + +++ T+ +Y A
Sbjct: 368 REIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKA 427
Query: 483 YATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
Y + +V ++ M K+G VP F
Sbjct: 428 YTKADMKEQVQILMKKMEKDGI-VPNKRF 455
Score = 38.5 bits (88), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 36/159 (22%)
Query: 184 NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
+K T+ T+N+++ Y + DK + +F+ + + N PS +TY +I ++G V
Sbjct: 307 SKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMN-DMNYIPSFITYECMIMMYGYCGSVS 365
Query: 244 HMEAAFQEIKDSN-----------------------------------LSPNVFTYNYLI 268
F+E+ +S+ + P+ TY +L
Sbjct: 366 RAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLY 425
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
Y A M +V+ + + M+ ++P+ +L L +
Sbjct: 426 KAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEVFG 464
>gi|15235161|ref|NP_195672.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75266408|sp|Q9SV96.1|PP358_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g39620, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2453; Flags: Precursor
gi|5042178|emb|CAB44697.1| putative protein [Arabidopsis thaliana]
gi|7270946|emb|CAB80625.1| putative protein [Arabidopsis thaliana]
gi|58013022|gb|AAW62964.1| chloroplast embryo-defective 2453 [Arabidopsis thaliana]
gi|332661694|gb|AEE87094.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 563
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 98/449 (21%), Positives = 185/449 (41%), Gaps = 62/449 (13%)
Query: 78 RKDLTQTVSALRDE------LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG 131
R+ L + SA R+ L++ + D + + + LD+ + H F+ L ++LG
Sbjct: 54 RRKLAERESAERENRVLVRSLMSRISDREPLVKTLDKYVKVVRCDH----CFL-LFEELG 108
Query: 132 SRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT 189
+ LEV W ++Q Y P Y+K I G+ +A LF+E N +
Sbjct: 109 KSDKWLQCLEVFRWMQKQRWY-IP-DNGVYSKLISVMGKKGQTRMAMWLFSEMKNSGCRP 166
Query: 190 IGT-YNALLGAYMYNGLSDKCQSLFR------DLKKEANISPSIVTYNTLISVFGRLLLV 242
+ YNAL+ A+++ DK ++L + +K P++VTYN L+ F + V
Sbjct: 167 DASVYNALITAHLHT--RDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSGKV 224
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
D + A F+++ S +SP+V+T+N ++ Y M ++E + M++ PD T+ +L
Sbjct: 225 DQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMRSNECKPDIITFNVL 284
Query: 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE 362
+ Y +ME+ ++ + + P +MI Y K + D K E + + + +
Sbjct: 285 IDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMID---KAEWVFKKMND 341
Query: 363 KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
Y P S T C++ Y C +V +
Sbjct: 342 MNYIP-------------------------------SFITY---ECMIMMYGYCGSVSRA 367
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482
+ + L S ++ + +Y E + + +++ T+ +Y A
Sbjct: 368 REIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLYKA 427
Query: 483 YATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
Y + +V ++ M K+G VP F
Sbjct: 428 YTKADMKEQVQILMKKMEKDGI-VPNKRF 455
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/159 (19%), Positives = 64/159 (40%), Gaps = 36/159 (22%)
Query: 184 NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
+K T+ T+N+++ Y + DK + +F+ + + N PS +TY +I ++G V
Sbjct: 307 SKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMN-DMNYIPSFITYECMIMMYGYCGSVS 365
Query: 244 HMEAAFQEIKDSN-----------------------------------LSPNVFTYNYLI 268
F+E+ +S+ + P+ TY +L
Sbjct: 366 RAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIEADKLFHNASAFRVHPDASTYKFLY 425
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
Y A M +V+ + + M+ ++P+ +L L +
Sbjct: 426 KAYTKADMKEQVQILMKKMEKDGIVPNKRFFLEALEVFG 464
>gi|449475395|ref|XP_004154439.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Cucumis sativus]
Length = 511
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 86/362 (23%), Positives = 150/362 (41%), Gaps = 18/362 (4%)
Query: 143 WRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYM 201
W R AG Y K I G+ + A +LF E + + + +Y ALL AY
Sbjct: 150 WYRPYAGM--------YIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAYS 201
Query: 202 YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV 261
+GL D+ S+ ++K + P + TY+ LI ++ + + ++ + PN
Sbjct: 202 RSGLLDEAFSILNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPNT 261
Query: 262 FTYNYLIAGYMTAWMWGKVEEI-YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
TYN I Y A M+ ++E I M+ PD T LR + SG L MEK YE
Sbjct: 262 ITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKCYE 321
Query: 321 LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV---LLIRVY 377
+ ++ +Y K + +K+ A+M + +K + W V ++I +
Sbjct: 322 KFQEAGIQPSIQTFNILLDSYGK---AESYEKMSAVMEYM-QKYHYSWTIVTYNIVIDAF 377
Query: 378 AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC 437
+ L++ME + + V + +V +Y + +K+ + + E++ L
Sbjct: 378 GRAGNLKQMEHLFRLMRSERIKPSCVTLC-SLVRAYGQAGKREKIDSVLNLVENSDIMLD 436
Query: 438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLG 497
Y+ + Y EM+ VL ME K T+ M AY+ G ++
Sbjct: 437 TVFYNCLVDAYGRLECFAEMKKVLGMMEQRGCKPDKTTYRTMARAYSDGGMANHAKEIQE 496
Query: 498 LM 499
L+
Sbjct: 497 LI 498
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 4/205 (1%)
Query: 166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
+G++ ++ + F EA + +I T+N LL +Y +K ++ ++K + S +
Sbjct: 310 SGQLETMEKCYEKFQEAGIQ--PSIQTFNILLDSYGKAESYEKMSAVMEYMQK-YHYSWT 366
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
IVTYN +I FGR + ME F+ ++ + P+ T L+ Y A K++ +
Sbjct: 367 IVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVLN 426
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
+++ +M DT Y L+ Y M+K+ +++ + R M AYS
Sbjct: 427 LVENSDIMLDTVFYNCLVDAYGRLECFAEMKKVLGMMEQRGCKPDKTTYRTMARAYSDGG 486
Query: 346 VTDRIKKIEALMRLI-PEKEYRPWL 369
+ + K+I+ L+ P K RP L
Sbjct: 487 MANHAKEIQELITTAEPSKRTRPDL 511
>gi|302763321|ref|XP_002965082.1| hypothetical protein SELMODRAFT_83088 [Selaginella moellendorffii]
gi|300167315|gb|EFJ33920.1| hypothetical protein SELMODRAFT_83088 [Selaginella moellendorffii]
Length = 731
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 82/364 (22%), Positives = 160/364 (43%), Gaps = 22/364 (6%)
Query: 153 PMTKEEYTKGIKFAGRINNVDLAADLFAE--AANKHLKTIGTYNALLGAYMYNGLSDKCQ 210
P E Y I F G + +FAE A L T+ T+NA++ Y G + + +
Sbjct: 226 PENPETYNTMISFYGEHAKFAEGSKVFAEMMKAGVELTTV-TFNAMIHVYGKAGRTREAE 284
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
L ++K+ + P + TYN+LI ++ + ++ + + ++DS +S + T+ LI+
Sbjct: 285 LLVTNMKQRKDCCPDVATYNSLIEMYVKNDKLELVSGCLERMRDSGVSADQVTFRTLISA 344
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
Y + K E + Q M+ + D Y +++ Y + ++P+ E ++ + H G E
Sbjct: 345 YAANNVVWKAEALVQEMEGSGFLIDQAMYTVMIAMYVRARDVPKAESVFRFL-HSRGGLE 403
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED-------CL 383
++ Y++ D+ +++ L + K P L ++++ Y D
Sbjct: 404 VSTYVGVMDVYAEHKCLDQAREVFELAKNAGLKT--PSLYNVMMKAYGACDRFTDAVTVF 461
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
E MEK + A ++ S ++ + C + ++ L + ++AG++ + S
Sbjct: 462 EAMEK--DGASPNEASFNSLIQLLC------KGRLLEILQRVLVLVKAAGFKPSLASCSS 513
Query: 444 KMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ Y RV E E V KEM ++ + + AYA G R+ Q L + G
Sbjct: 514 VVSFYGDMGRVREAERVFKEMLASGVEADVICYSALLNAYAEAGFAREAQQTLDSLKAAG 573
Query: 504 YDVP 507
+ VP
Sbjct: 574 F-VP 576
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 86/179 (48%), Gaps = 7/179 (3%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
+ F G + V A +F E ++ + Y+ALL AY G + + Q LK A
Sbjct: 515 VSFYGDMGRVREAERVFKEMLASGVEADVICYSALLNAYAEAGFAREAQQTLDSLKA-AG 573
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
P + Y +++ ++ L L+ E ++EI S LSP+VF N ++ Y+ + M+ + E
Sbjct: 574 FVPDTIVYTSMMKLYSNLGLIAEAEKIYEEI--SRLSPDVFAANTMLNLYIKSGMFTEAE 631
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH---VDGKEFPLIRAM 337
++++ M+ G + ++L+ Y +G + + + ++ D + F ++ AM
Sbjct: 632 QLFRAMQRGKPGLNEVACTMMLKLYREAGKIEQGLDVARVMSRRFLITDARAFNVVIAM 690
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/311 (20%), Positives = 126/311 (40%), Gaps = 52/311 (16%)
Query: 172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDK---CQSLFRDLKKE--------- 219
+D A ++F A N LKT YN ++ AY G D+ ++F ++K+
Sbjct: 420 LDQAREVFELAKNAGLKTPSLYNVMMKAY---GACDRFTDAVTVFEAMEKDGASPNEASF 476
Query: 220 -------------------------ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
A PS+ + ++++S +G + V E F+E+
Sbjct: 477 NSLIQLLCKGRLLEILQRVLVLVKAAGFKPSLASCSSVVSFYGDMGRVREAERVFKEMLA 536
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
S + +V Y+ L+ Y A + ++ +KA +PDT Y +++ Y++ G +
Sbjct: 537 SGVEADVICYSALLNAYAEAGFAREAQQTLDSLKAAGFVPDTIVYTSMMKLYSNLGLIAE 596
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN---- 370
EKIYE + + M+ Y K + + E L R + + +P LN
Sbjct: 597 AEKIYEEISRL--SPDVFAANTMLNLYIKSGM---FTEAEQLFRAM--QRGKPGLNEVAC 649
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
+++++Y + +E+ + + +T R +++ Y + + + +K
Sbjct: 650 TMMLKLYREAGKIEQ-GLDVARVMSRRFLITDARAFNVVIAMYVKAGLMREALEALKEMR 708
Query: 431 SAGWRLCRSLY 441
AG RS +
Sbjct: 709 RAGLVPSRSTF 719
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 89/393 (22%), Positives = 161/393 (40%), Gaps = 54/393 (13%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTY 193
R A+EV +W +RQ Y + Y ++ GR +L ++E + + TI TY
Sbjct: 98 RKAIEVFSWFQRQDNYEANVFL--YNILLRTLGRAAKWELLQKYWSEMLGERVPPTIFTY 155
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
+ L+ + G+ D+ +R + E+ + P V +T +++ R ++ E AF +
Sbjct: 156 SILVDVHGRAGMKDEAIRFYRHM-IESGVEPDEVMVSTYMNLQRRFGDLEEAEKAFWGLF 214
Query: 254 DSNL-------SPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRG 305
NL N TYN +I+ Y + + +++ +MMKAG V T T+ ++
Sbjct: 215 SENLVDGTTKRPENPETYNTMISFYGEHAKFAEGSKVFAEMMKAG-VELTTVTFNAMIHV 273
Query: 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY 365
Y +G E + +K D C +
Sbjct: 274 YGKAGRTREAELLVTNMKQRKD-----------CCPDVATYNS----------------- 305
Query: 366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
LI +Y K D LE + + + S V R ++S+Y N V K
Sbjct: 306 -------LIEMYVKNDKLELVSGCLERMRDSGVSADQV-TFRTLISAYAANNVVWKAEAL 357
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY-KIDCSKKTFWIMYYAYA 484
V+ E +G+ + +++Y + MY R V + ESV + + + ++ S + YA
Sbjct: 358 VQEMEGSGFLIDQAMYTVMIAMYVRARDVPKAESVFRFLHSRGGLEVSTYVGVMDVYAEH 417
Query: 485 TC-GQRRKVNQV---LGLMCKNGYDVPVNAFPS 513
C Q R+V ++ GL + Y+V + A+ +
Sbjct: 418 KCLDQAREVFELAKNAGLKTPSLYNVMMKAYGA 450
>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 80/384 (20%), Positives = 160/384 (41%), Gaps = 26/384 (6%)
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
+ E M+ G +P + N + G + ++T+ +K IN L+ D
Sbjct: 405 SIFEEMRNAGCKPNIC--TFNAFIKMYG-----NRGKFTEMMKIFDEINVCGLSPD---- 453
Query: 182 AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241
I T+N LL + NG+ + +F+++K+ A P T+NTLIS + R
Sbjct: 454 --------IVTWNTLLAVFGQNGMDSEVSGVFKEMKR-AGFVPERETFNTLISAYSRCGS 504
Query: 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301
+ ++ + D+ ++P++ TYN ++A MW + E++ M+ G P+ TY
Sbjct: 505 FEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCS 564
Query: 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIP 361
LL YA+ + M + E V V L++ ++ SKC D + + E +
Sbjct: 565 LLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKC---DLLPEAERAFSELK 621
Query: 362 EKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
E+ + P + L ++ +Y + + + + D + + ++ ++ + R
Sbjct: 622 ERGFSPDITTLNSMVSIYGRRQMVAKA-NGVLDYMKERGFTPSMATYNSLMYMHSRSADF 680
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
K ++ + G + Y++ + Y R+ + + EM N I T+
Sbjct: 681 GKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTF 740
Query: 480 YYAYATCGQRRKVNQVLGLMCKNG 503
+YA + V+ M K+G
Sbjct: 741 IGSYAADSMFEEAIGVVRYMIKHG 764
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 125/297 (42%), Gaps = 11/297 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ L + +F ++K A S VTYN L+ V+G+ E
Sbjct: 281 TYNTLITCCKRGSLHQEAAQVFEEMKA-AGFSYDKVTYNALLDVYGKSHRPKEAMKVLNE 339
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + SP++ TYN LI+ Y M + E+ M PD TY LL G+ +G
Sbjct: 340 MVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGK 399
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAY-SKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+ I+E +++ A I Y ++ T+ +K + + + W N
Sbjct: 400 VESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTW-N 458
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV---RIMRCIVSSYFRCNAVDKLANFVK 427
LL V+ + M+ ++ F+ V ++S+Y RC + ++ +
Sbjct: 459 TLLA-VFGQNG----MDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYR 513
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
R AG S Y++ + A E+ E VL EME+ + ++ T+ + +AYA
Sbjct: 514 RMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYA 570
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 189 TIGTYNALLGAYMYNGLSD--KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
++ TYN+L+ YM++ +D K + + R++ + I P I++YNT+I + R +
Sbjct: 663 SMATYNSLM--YMHSRSADFGKSEEILREILAKG-IKPDIISYNTVIYAYCRNTRMRDAS 719
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
F E+++S + P+V TYN I Y M+ + + + M P+ NTY ++ GY
Sbjct: 720 RIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGY 779
>gi|302822454|ref|XP_002992885.1| hypothetical protein SELMODRAFT_431017 [Selaginella moellendorffii]
gi|300139333|gb|EFJ06076.1| hypothetical protein SELMODRAFT_431017 [Selaginella moellendorffii]
Length = 584
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 83/357 (23%), Positives = 144/357 (40%), Gaps = 20/357 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I +AG + + LA F + K + K+ NAL+ AY + D + +K
Sbjct: 206 YSMMISYAGVVGHTMLARSWFDDMFEKGMRKSSQCCNALIIAYAKDNDLDSAMQILHGMK 265
Query: 218 K-EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
+ P+ +TY+ LI++F R +EA +E +D+ LSP+ T+N L+ Y
Sbjct: 266 QFSRECPPNAMTYHILIAMFARYHHWQGLEAMVRECRDAGLSPDAITFNTLLHAYAKMGR 325
Query: 277 WGKVEEIYQMMK------AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV---- 326
+ E +Q M+ P T+ LL GY+ L R ++ ++
Sbjct: 326 MDRFESTFQEMERVCRKGDEPFKRSPETFAALLIGYSRLDALDRFHQVLSEMREESSQLP 385
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM 386
P + A+S+ + + I+K+ + PE ++ +YA+ LEE+
Sbjct: 386 QNIAVPAVEEAAKAHSRTATVEGIEKLIEFVETTPEIASTSAFQSYVVELYAQCGRLEEI 445
Query: 387 EKSINDAFEHK-TSVTTVRIMRCIVSSYFR-------CNAVDKLANFVKRAESAGWRLCR 438
E + + K S +V ++ R AV+++ + AG L
Sbjct: 446 ENYLGRVIDRKDGSFVEDPAFESMVGAFGRRGVEQPESKAVERVYTIYAKCREAGMELSS 505
Query: 439 SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQV 495
Y S ++ A E ME V +ME KT + AY G KV ++
Sbjct: 506 HCYESVVLEMARAGSYERMEEVAADMEAAGAKWPAKTLRALLDAYQRSGNDAKVAEM 562
>gi|255578090|ref|XP_002529915.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530592|gb|EEF32469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 636
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 158/367 (43%), Gaps = 12/367 (3%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
AL+V R Q Y P + Y K I G+ + A +LF ++ + +Y A
Sbjct: 138 ALKVFELLREQIWY-RPYSGM-YIKLIVMLGKCKQPEKAHELFQAMIHEGCDVSHESYTA 195
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
LL AY +GL DK SL ++K+ + P + TY+ LI ++ D + ++
Sbjct: 196 LLSAYGRSGLLDKAFSLLEEMKRNPDCQPDVHTYSILIKSCVQVFAFDKAKTLLSNMESL 255
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+SPN TYN LI Y A M+ ++E + +M+ PD T LR + SG +
Sbjct: 256 GISPNTITYNTLIDAYGKAKMFEEMEATLVKMLSQQNCEPDVWTMNSTLRAFGISGQIET 315
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--- 371
MEK YE + ++ +Y K KK+ A+M + + Y W +
Sbjct: 316 MEKCYEKFQGAGIEPSIMTFNVLLDSYGKAG---DYKKMSAVMEYMQKYHY-SWTIITYN 371
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
++I + + L++ME + + V + +V +Y + +K+ ++ E+
Sbjct: 372 IVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLC-SLVRAYGQAEKPEKIEGVLRFIEN 430
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
+ L ++ + Y EM+ VL ME K T+ M AY++ G +
Sbjct: 431 SDITLDTVFFNCLVDAYGRMGCFAEMKGVLILMEQKGYRPDKITYRTMIKAYSSKGMTKH 490
Query: 492 VNQVLGL 498
V ++ L
Sbjct: 491 VKELQDL 497
>gi|449443726|ref|XP_004139628.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Cucumis sativus]
Length = 456
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 86/362 (23%), Positives = 149/362 (41%), Gaps = 18/362 (4%)
Query: 143 WRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYM 201
W R AG Y K I G+ + A +LF E + + + +Y ALL AY
Sbjct: 95 WYRPYAGM--------YIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALLSAYS 146
Query: 202 YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV 261
+GL D+ S+ ++K + P + TY+ LI ++ + + ++ + PN
Sbjct: 147 RSGLLDEAFSILNEMKNSPDCQPDVHTYSILIKSCLQVFAFNKAQTLLSDMVTRGIKPNT 206
Query: 262 FTYNYLIAGYMTAWMWGKVEEI-YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
TYN I Y A M+ ++E I M+ PD T LR + SG L MEK YE
Sbjct: 207 ITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVWTMNSTLRAFGRSGQLETMEKCYE 266
Query: 321 LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV---LLIRVY 377
+ ++ +Y K + +K+ A+M + + Y W V ++I +
Sbjct: 267 KFQEAGIQPSIQTFNILLDSYGK---AESYEKMSAVMEYMQKYHY-SWTIVTYNIVIDAF 322
Query: 378 AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC 437
+ L++ME + + V + +V +Y + +K+ + + E++ L
Sbjct: 323 GRAGNLKQMEHLFRLMRSERIKPSCVTLC-SLVRAYGQAGKREKIDSVLNLVENSDIMLD 381
Query: 438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLG 497
Y+ + Y EM+ VL ME K T+ M AY+ G ++
Sbjct: 382 TVFYNCLVDAYGRLECFAEMKKVLGMMEQRGCKPDKTTYRTMARAYSDGGMANHAKEIQE 441
Query: 498 LM 499
L+
Sbjct: 442 LI 443
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 96/205 (46%), Gaps = 4/205 (1%)
Query: 166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
+G++ ++ + F EA + +I T+N LL +Y +K ++ ++K + S +
Sbjct: 255 SGQLETMEKCYEKFQEAGIQ--PSIQTFNILLDSYGKAESYEKMSAVMEYMQK-YHYSWT 311
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
IVTYN +I FGR + ME F+ ++ + P+ T L+ Y A K++ +
Sbjct: 312 IVTYNIVIDAFGRAGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVLN 371
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
+++ +M DT Y L+ Y M+K+ +++ + R M AYS
Sbjct: 372 LVENSDIMLDTVFYNCLVDAYGRLECFAEMKKVLGMMEQRGCKPDKTTYRTMARAYSDGG 431
Query: 346 VTDRIKKIEALMRLI-PEKEYRPWL 369
+ + K+I+ L+ P K RP L
Sbjct: 432 MANHAKEIQELITTAEPSKRTRPDL 456
>gi|224099036|ref|XP_002311357.1| predicted protein [Populus trichocarpa]
gi|222851177|gb|EEE88724.1| predicted protein [Populus trichocarpa]
Length = 369
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 148/342 (43%), Gaps = 16/342 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y K + GR A +F E + ++ T Y ALL AY N L ++ S+ +K
Sbjct: 18 YMKLLVLLGRCGQPQRAHQIFDEMIEEGIEPTSEFYTALLAAYCRNNLIEEGFSIINQMK 77
Query: 218 KEANISPSIVTYNTLISV---FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
P + TY+TL+ R L+D + +QE+ + +SPN T N +++G+
Sbjct: 78 TVPRCQPDVYTYSTLLKACVDASRFELIDIL---YQEMDERLISPNTVTQNIVLSGFGKV 134
Query: 275 WMWGKVEEIYQ-MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
M+ ++E + M+++ PD T ++L + + G++ ME+ YE ++ E
Sbjct: 135 GMYDQMERVLSGMLESKTCKPDVWTMNIILSVFGNKGHVDLMERWYEKFRNFGIEPETRT 194
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL---LIRVYAKEDCLEEMEKSI 390
+I AY K + D + + MR K PW +I +A + ME +
Sbjct: 195 FNILIGAYGKKRMYDNMSSVMEYMR----KLQFPWTTSTYNNVIEAFADVGDAKNMEYTF 250
Query: 391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450
D + + C+++ Y K+ + V+ A SLY + + A
Sbjct: 251 -DQMRAEDMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTSLYKAVISACAK 309
Query: 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
+ EME V K+M++ + +T+ IM AY G K+
Sbjct: 310 ADDLVEMERVFKQMKDKQCLPDSRTYSIMVEAYRKEGMNDKI 351
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/301 (19%), Positives = 121/301 (40%), Gaps = 8/301 (2%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F LK++ P TY L+ + GR F E+ + + P Y L+A Y
Sbjct: 1 MFEMLKEQPFYQPKEATYMKLLVLLGRCGQPQRAHQIFDEMIEEGIEPTSEFYTALLAAY 60
Query: 272 MTAWMWGKVEEIYQMMKAGP-VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+ + I MK P PD TY LL+ + ++ +Y+ + +
Sbjct: 61 CRNNLIEEGFSIINQMKTVPRCQPDVYTYSTLLKACVDASRFELIDILYQEMDERLISPN 120
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEK 388
++ + K + D+++++ L ++ K +P W +++ V+ + ++ ME+
Sbjct: 121 TVTQNIVLSGFGKVGMYDQMERV--LSGMLESKTCKPDVWTMNIILSVFGNKGHVDLMER 178
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
+ F + R ++ +Y + D +++ ++ + S Y++ + +
Sbjct: 179 WY-EKFRNFGIEPETRTFNILIGAYGKKRMYDNMSSVMEYMRKLQFPWTTSTYNNVIEAF 237
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV 508
A + ME +M + KTF + YA G KV + L K +++P
Sbjct: 238 ADVGDAKNMEYTFDQMRAEDMKADTKTFCCLINGYANAGLFHKVISSVQLAAK--FEIPE 295
Query: 509 N 509
N
Sbjct: 296 N 296
>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 827
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 131/312 (41%), Gaps = 43/312 (13%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I T+N LL + NG+ + +F+++K+ A P T+NTLIS + R A +
Sbjct: 463 IVTWNTLLAVFGQNGMDSEVSGVFKEMKR-AGFVPERDTFNTLISAYSRCGSFQQAMAVY 521
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + ++ ++P++ +YN ++A +W + E+++ MK G P+ TY LL YA+S
Sbjct: 522 KRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANS 581
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
+ RM + E + + L++ ++ SKC
Sbjct: 582 KEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKC------------------------- 616
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEH--KTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
D L E E AFE K + + +++ Y R V K +
Sbjct: 617 -----------DLLMETEH----AFEELKKKGSPDLSTLNAMIAIYGRRQMVAKANEILN 661
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+G+ + Y+S M M++ E E VLKE+ + ++ + +AY G
Sbjct: 662 FMNESGFSPSLATYNSLMYMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNG 721
Query: 488 QRRKVNQVLGLM 499
+ + +++ M
Sbjct: 722 RMKDASRIFSYM 733
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 76/310 (24%), Positives = 131/310 (42%), Gaps = 37/310 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ L ++ +F ++K + SP VT+NTL+ V+G+ +E
Sbjct: 290 TYNTLISCCRRGSLYEEAAQVFEEMKL-SGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKE 348
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG- 310
++ S SP++ TYN LI+ Y + + E+ M + PD TY LL G+ +G
Sbjct: 349 MEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGM 408
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK------KIEALMRLIPEKE 364
+ P M + F +RA C + C+ IK + +M++ E E
Sbjct: 409 DEPAM-------------RIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIE 455
Query: 365 -------YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV---RIMRCIVSSYF 414
W N LL V+ + M+ ++ F+ V ++S+Y
Sbjct: 456 ICNCAPDIVTW-NTLLA-VFGQNG----MDSEVSGVFKEMKRAGFVPERDTFNTLISAYS 509
Query: 415 RCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKK 474
RC + + KR AG S Y++ + A E+ E V EM++ + ++
Sbjct: 510 RCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNEL 569
Query: 475 TFWIMYYAYA 484
T+ + +AYA
Sbjct: 570 TYCSLLHAYA 579
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 78/387 (20%), Positives = 155/387 (40%), Gaps = 45/387 (11%)
Query: 126 LMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA 183
++K LG + +A+ V +W R + + + + I G+ V A+ +
Sbjct: 150 IIKGLGFYKKCDMAMSVFSWVREREDFESVLNCSVVAVIITMLGKEGKVSAASSILNNLR 209
Query: 184 NKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
+ Y +L+ AY NG +F+ +++E P+++TYN +++V+G++ +
Sbjct: 210 KDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEG-CKPTLITYNVILNVYGKMGMP 268
Query: 243 -DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301
+ +K S ++P+ +TYN LI+ ++ + ++++ MK PD T+
Sbjct: 269 WSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNT 328
Query: 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIP 361
LL Y S R ++ E++K EF I Y+
Sbjct: 329 LLDVYGKS---RRPKEAMEVLKEM----EFSGFSPSIVTYNS------------------ 363
Query: 362 EKEYRPWLNVLLIRVYAKEDCLEE-MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420
LI YA++ L E ME + D K V ++S + + +
Sbjct: 364 -----------LISAYARDGLLREAME--LKDQMVEKGIKPDVFTYTTLLSGFEKAGMDE 410
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480
+AG + +++ + M+ ++ R EM V +E+E T+ +
Sbjct: 411 PAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLL 470
Query: 481 YAYATCGQRRKVNQVLGLMCKNGYDVP 507
+ G +V+ V M + G+ VP
Sbjct: 471 AVFGQNGMDSEVSGVFKEMKRAGF-VP 496
>gi|224069810|ref|XP_002303045.1| predicted protein [Populus trichocarpa]
gi|222844771|gb|EEE82318.1| predicted protein [Populus trichocarpa]
Length = 388
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 93/374 (24%), Positives = 156/374 (41%), Gaps = 24/374 (6%)
Query: 135 RLALEVLN---WRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TI 190
RL E+L W R AG Y K I G+ D A LF ++ T
Sbjct: 14 RLVFELLREQLWYRPYAGM--------YVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTH 65
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
+Y ALL AY +GL DK S+ ++K + P + TY+ LI ++ D ++
Sbjct: 66 ESYTALLSAYGRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLS 125
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+++ + PN TYN +I Y A M+ ++E + +M+ PD T +R + S
Sbjct: 126 DMESLGIRPNTVTYNTVIDAYGKAKMFAEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGS 185
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G + ME YE K G E P I+ +K+ A+M + Y W
Sbjct: 186 GQMEMMENCYE--KFQSAGIE-PNIKTFNILLDSYGKAGNYQKMSAVMEYMQRYHY-SWT 241
Query: 370 NV---LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
V ++I + + L++ME + + V + +V +Y +K+ + +
Sbjct: 242 IVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCS-LVRAYREAGKPEKIGSVL 300
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
+ E++ L ++ + Y EM+ VL+ ME K T+ M AY+
Sbjct: 301 RFIENSDVTLDTVFFNCLVDAYGRLECFAEMKEVLELMEEKGCKPDKVTYRTMIKAYSIK 360
Query: 487 G---QRRKVNQVLG 497
G +K+ +LG
Sbjct: 361 GMTSHAKKLRNLLG 374
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/293 (17%), Positives = 108/293 (36%), Gaps = 45/293 (15%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F L+++ P Y LI + G+ D FQ + D + +Y L++ Y
Sbjct: 16 VFELLREQLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAY 75
Query: 272 MTAWMWGKVEEIYQMMKAGP-VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+ ++ K I + MK P PD +TY +L++
Sbjct: 76 GRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKS------------------------- 110
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEM 386
C K++ L+ + RP N + +I Y K EM
Sbjct: 111 -------------CLQVFAFDKVQVLLSDMESLGIRP--NTVTYNTVIDAYGKAKMFAEM 155
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446
E ++ + + V M + ++ ++ + N ++ +SAG ++ +
Sbjct: 156 EATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKFQSAGIEPNIKTFNILLD 215
Query: 447 MYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
Y ++M +V++ M+ Y + T+ ++ A+ G +++ + LM
Sbjct: 216 SYGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLM 268
>gi|357113964|ref|XP_003558771.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g48000-like [Brachypodium distachyon]
Length = 413
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 147/318 (46%), Gaps = 20/318 (6%)
Query: 157 EEYTKGIKFAGRINNVDLAADLF--AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFR 214
E Y+ I+F G N LA +F EA L T G +NAL+ A++ G +L+
Sbjct: 100 EPYSTIIRFCGETRNAALAMRVFEGVEAQGIQLNT-GIFNALINAFLSVGDLLAAVTLYE 158
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
++ + P TY+ IS F R+ D M + + K++ P++ T+ LI G +
Sbjct: 159 TMEGMEDCKPDSATYDAFISAFSRIGSGDAMMSWYLAAKNAEFIPSIQTFESLIVGLVRL 218
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
E +++ M + + P+ L + + R+++ +K DG + L
Sbjct: 219 NRLDDDEVVFEEMISFEIKPNFTILEAQLEVLSRTKEANRVKR---FIKKFSDGN-WELN 274
Query: 335 RAMICAYSK-----CSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKS 389
+A + ++ C V D+++++ AL++ + L+ +IR YA D L +ME +
Sbjct: 275 KATVGRLTRLCLDGCEV-DQMEQLLALIQTGVDLSSVTRLHSGIIRFYASTDRLPDMENA 333
Query: 390 INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYA 449
I F+ + + ++ SYFR D+L F+ R S +RL RS Y ++ A
Sbjct: 334 ICRMFDDGMTFMCPEDVEAVICSYFRQKDFDRLDMFLNRIRSL-YRLTRSTYD---ILVA 389
Query: 450 SQRRV---EEMESVLKEM 464
RR + ++S +K+M
Sbjct: 390 GFRRFDLHQPLDSTIKDM 407
>gi|242042151|ref|XP_002468470.1| hypothetical protein SORBIDRAFT_01g046480 [Sorghum bicolor]
gi|241922324|gb|EER95468.1| hypothetical protein SORBIDRAFT_01g046480 [Sorghum bicolor]
Length = 409
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 158/360 (43%), Gaps = 22/360 (6%)
Query: 117 HSNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDL 174
H +G + L L S P A +L W + E Y++ I+F G+ N L
Sbjct: 54 HRDGAFWEPLAAALLRASSPTKAHLILEWELEKLLKENIQDCEPYSRIIRFCGQTRNATL 113
Query: 175 AADLF--AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
A +F EA L T +NAL+ A++ G +L+ ++ +P+ TY+
Sbjct: 114 AMRVFECVEAKGIQLNT-NIFNALINAFLSAGDLLSAMTLYESMEDMDGCNPNSATYDAF 172
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I F L M + + K++ +P++ T+ LI G++ M + I++ M A +
Sbjct: 173 ICAFSLLGSGHAMMSWYVAAKNAGFTPSIQTFESLITGFVQLNMLDDAKTIFEEMIALEI 232
Query: 293 MPDTN----TYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-CSVT 347
P++ + +L R S ++ + +K DG + L +A++ ++ C
Sbjct: 233 KPNSTILEASLEILYRKEEAS-------RVRDFLKRVSDGN-WELNKAIVVRLTRICLDG 284
Query: 348 DRIKKIEALMRLI---PEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR 404
I ++E L+ LI P L+ +IR YAK D L +ME +I ++
Sbjct: 285 GEIDEMEQLLALIQKGPHLSSETQLHHGIIRFYAKADQLADMEHAIYRMLDNGVVFMCPE 344
Query: 405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
+ I+ SYFR D+L F+ R + ++L RS Y + Y E ++S + +M
Sbjct: 345 DVEVIICSYFRHREFDRLDLFLNRIRNL-FKLNRSTYDILVAGYRKFDLHERLDSTIADM 403
>gi|255553476|ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543051|gb|EEF44586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/363 (24%), Positives = 166/363 (45%), Gaps = 18/363 (4%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIG 191
R + AL++ R+Q Y P + YTK + G+ + A LF + L+ TI
Sbjct: 107 RWKSALKIFELLRKQHWY-EPRC-QTYTKLLMMLGKCRQPEEARLLFEVMQTEGLRPTID 164
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y AL+ AY +GL K S ++K ++ P + TY+ LI++ +L D + E
Sbjct: 165 VYTALVSAYGESGLLAKAFSTVDEMKSVSDCKPDVYTYSVLINICTKLHRFDLIGRILSE 224
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVE-EIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + + T+N +I GY A M+ ++E + M++ G +PD T+ ++ Y +SG
Sbjct: 225 MSYLGVECSTVTFNTIINGYGKAKMFREMENSLTNMIEIGNSVPDLFTFNSVIGAYGNSG 284
Query: 311 NLPRMEKIY---ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
+ +MEK Y +L+ D K F + +I +Y K + ++I + M+ K + P
Sbjct: 285 RIEKMEKWYNEFQLMGISPDIKTFNI---LIKSYGKAGMYEKINSVIEFMK----KRFFP 337
Query: 368 WLNV---LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
V ++I + + +E M++ +H +VS+Y + + K+ +
Sbjct: 338 PTVVTYNIIIETFGRAGDIENMDEYFK-TMKHLGMKPNAITYCSLVSAYSKAGLLMKVNS 396
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
+++ E++ L + ++ + Y V++M + EM + TF M AY
Sbjct: 397 ILRQVENSDVVLDTTFFNCIINAYGQAGDVDKMAELFLEMRERECMPDNVTFATMIQAYR 456
Query: 485 TCG 487
G
Sbjct: 457 GQG 459
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 87/168 (51%), Gaps = 1/168 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I T+N L+ +Y G+ +K S+ +KK P++VTYN +I FGR +++M+ F
Sbjct: 305 IKTFNILIKSYGKAGMYEKINSVIEFMKKRF-FPPTVVTYNIIIETFGRAGDIENMDEYF 363
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ +K + PN TY L++ Y A + KV I + ++ V+ DT + ++ Y +
Sbjct: 364 KTMKHLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNCIINAYGQA 423
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357
G++ +M +++ ++ + MI AY +T+ + +E +M
Sbjct: 424 GDVDKMAELFLEMRERECMPDNVTFATMIQAYRGQGMTEAAQALEKMM 471
>gi|147812171|emb|CAN61515.1| hypothetical protein VITISV_033964 [Vitis vinifera]
Length = 1331
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 171/377 (45%), Gaps = 16/377 (4%)
Query: 97 DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMT 155
+ + ++ VLD + + F+ S+ +++ L+ L S P A VL WR +
Sbjct: 958 ESISRIKTVLDSEDNFTFK--SSDFSWDILLTTLKSSSPAKAHLVLEWRLEKMVRDNERD 1015
Query: 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFR 214
Y + I ++ NV A +F +K T +NAL+ + +G SLF
Sbjct: 1016 LVPYLELIFLCSKVQNVPFAMRVFNSMEAHGIKLTSSVFNALICTCLSSGNVMTALSLFE 1075
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
++ N P+ TYNT ISV+ L M+A + K + S ++ TY LI+G +
Sbjct: 1076 IMQSSENCKPNSETYNTFISVYSNLGNDKAMQAWYLAXKGAGFSADLRTYESLISGCXRS 1135
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK---EF 331
+ + Y+ M +MPB +LRG ++ ++E +L+K +DG+
Sbjct: 1136 RNFDCADRFYEEMMLSGIMPBGQILENILRGLCEQRSISKVE---QLLKFMMDGEWEINV 1192
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL---LIRVYAKEDCLEEMEK 388
+ ++ Y + ++++ E L+ L+ + L + +IR++A D L++ME
Sbjct: 1193 SMAEKLMGLYFEHGTVEKME--ELLLNLMNSNQSFAVLQQVHCGIIRMHAMLDRLDDMEY 1250
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
S+ + S + +V +YFR A ++L F+ + + ++L +S Y + Y
Sbjct: 1251 SVGRMLKQGMSFRCPDDIEKVVCAYFRREAYERLDLFLGHIKGS-YKLTKSTYDLLVAGY 1309
Query: 449 ASQRRVEEMESVLKEME 465
E+++ V+ M+
Sbjct: 1310 RRAGLSEKLDLVMDGMK 1326
>gi|302757495|ref|XP_002962171.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
gi|300170830|gb|EFJ37431.1| hypothetical protein SELMODRAFT_77736 [Selaginella moellendorffii]
Length = 731
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/364 (22%), Positives = 159/364 (43%), Gaps = 22/364 (6%)
Query: 153 PMTKEEYTKGIKFAGRINNVDLAADLFAE--AANKHLKTIGTYNALLGAYMYNGLSDKCQ 210
P E + I F G A+ +FAE A L T+ T+NA++ Y G + + +
Sbjct: 226 PENPETFNTMISFYGEHAKFAEASKVFAEMMKAGVELTTV-TFNAMIHVYGKAGRTREAE 284
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
L +K+ + P + TYN+LI ++ + ++ + + ++DS +SP+ T+ LI+
Sbjct: 285 LLVTKMKQRKDCCPDVATYNSLIEMYVKNDKLELVSGCLERMRDSGVSPDQVTFRTLISA 344
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
Y + K E + Q M+ D Y +++ Y + ++ + E ++ + H G E
Sbjct: 345 YAANNVVWKAEALVQEMEGSGFFIDQAMYTVMIAMYVRARDVSKAESVFRFL-HSRGGLE 403
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED-------CL 383
++ Y++ D+ +++ L + K P L ++++ Y D
Sbjct: 404 VSTYVGVMDVYAEHKCLDQAREVFELAKNAGLKT--PSLYNVMMKAYGACDRFTDAVTVF 461
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
E MEK + A ++ S ++ + C + ++ L + ++AG++ + S
Sbjct: 462 EAMEK--DGASPNEASFNSLIQLLC------KGRLLEILQRVLVLVKAAGFKPSLASCSS 513
Query: 444 KMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ Y RV E E V KEM ++ + + AYA G R+ Q L + G
Sbjct: 514 VVSFYGDMGRVREAERVFKEMLASGVEADVICYSALLNAYAEAGFAREAQQTLDSLKAAG 573
Query: 504 YDVP 507
+ VP
Sbjct: 574 F-VP 576
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 4/153 (2%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
+ F G + V A +F E ++ + Y+ALL AY G + + Q LK A
Sbjct: 515 VSFYGDMGRVREAERVFKEMLASGVEADVICYSALLNAYAEAGFAREAQQTLDSLKA-AG 573
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
P + Y +++ ++ L L E ++EI S LSP+VF N ++ Y+ + M+ + E
Sbjct: 574 FVPDTIVYTSMMKLYSNLGLTAEAEKIYEEI--SRLSPDVFAANTMLNLYIKSGMFTEAE 631
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
++++ M+ G + ++L+ Y +G + +
Sbjct: 632 QLFRAMQRGKPGLNEVACTMMLKLYREAGKIEQ 664
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 88/393 (22%), Positives = 161/393 (40%), Gaps = 54/393 (13%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTY 193
R A+EV +W +RQ Y + Y ++ GR +L ++E + + TI TY
Sbjct: 98 RKAIEVFSWFQRQDNYEANVFL--YNILLRTLGRAAKWELLQKYWSEMLGERVPPTIFTY 155
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
+ L+ + G+ D+ +R + E+ + P V +T +++ R ++ E AF +
Sbjct: 156 SILVDVHGRAGMKDEAIRFYRHM-IESGVEPDEVMVSTYMNLQRRFGDLEEAEKAFWGLF 214
Query: 254 DSNL-------SPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRG 305
NL N T+N +I+ Y + + +++ +MMKAG V T T+ ++
Sbjct: 215 SENLVDGTTKRPENPETFNTMISFYGEHAKFAEASKVFAEMMKAG-VELTTVTFNAMIHV 273
Query: 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY 365
Y +G E + +K D C +
Sbjct: 274 YGKAGRTREAELLVTKMKQRKD-----------CCPDVATYNS----------------- 305
Query: 366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
LI +Y K D LE + + + S V R ++S+Y N V K
Sbjct: 306 -------LIEMYVKNDKLELVSGCLERMRDSGVSPDQV-TFRTLISAYAANNVVWKAEAL 357
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY-KIDCSKKTFWIMYYAYA 484
V+ E +G+ + +++Y + MY R V + ESV + + + ++ S + YA
Sbjct: 358 VQEMEGSGFFIDQAMYTVMIAMYVRARDVSKAESVFRFLHSRGGLEVSTYVGVMDVYAEH 417
Query: 485 TC-GQRRKVNQV---LGLMCKNGYDVPVNAFPS 513
C Q R+V ++ GL + Y+V + A+ +
Sbjct: 418 KCLDQAREVFELAKNAGLKTPSLYNVMMKAYGA 450
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/308 (19%), Positives = 122/308 (39%), Gaps = 46/308 (14%)
Query: 172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE------------ 219
+D A ++F A N LKT YN ++ AY ++F ++K+
Sbjct: 420 LDQAREVFELAKNAGLKTPSLYNVMMKAYGACDRFTDAVTVFEAMEKDGASPNEASFNSL 479
Query: 220 ----------------------ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
A PS+ + ++++S +G + V E F+E+ S +
Sbjct: 480 IQLLCKGRLLEILQRVLVLVKAAGFKPSLASCSSVVSFYGDMGRVREAERVFKEMLASGV 539
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
+V Y+ L+ Y A + ++ +KA +PDT Y +++ Y++ G EK
Sbjct: 540 EADVICYSALLNAYAEAGFAREAQQTLDSLKAAGFVPDTIVYTSMMKLYSNLGLTAEAEK 599
Query: 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN----VLL 373
IYE + + M+ Y K + + E L R + + +P LN ++
Sbjct: 600 IYEEISRL--SPDVFAANTMLNLYIKSGM---FTEAEQLFRAM--QRGKPGLNEVACTMM 652
Query: 374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
+++Y + +E+ + + +T R +++ Y + + + +K AG
Sbjct: 653 LKLYREAGKIEQ-GLDVARVMSRRFLITDARAFNGVIAMYVKAGLMREALEALKEMRRAG 711
Query: 434 WRLCRSLY 441
RS +
Sbjct: 712 LVPSRSTF 719
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 99/251 (39%), Gaps = 40/251 (15%)
Query: 149 GYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDK 208
G G + + YT I R +V A +F ++ + TY ++ Y + D+
Sbjct: 363 GSGFFIDQAMYTVMIAMYVRARDVSKAESVFRFLHSRGGLEVSTYVGVMDVYAEHKCLDQ 422
Query: 209 CQSLFRDLKKEANI-SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+ +F +L K A + +PS+ YN ++ +G F+ ++ SPN ++N L
Sbjct: 423 AREVF-ELAKNAGLKTPSL--YNVMMKAYGACDRFTDAVTVFEAMEKDGASPNEASFNSL 479
Query: 268 I---------------------AGYMTAWM-----------WGKV---EEIYQMMKAGPV 292
I AG+ + G+V E +++ M A V
Sbjct: 480 IQLLCKGRLLEILQRVLVLVKAAGFKPSLASCSSVVSFYGDMGRVREAERVFKEMLASGV 539
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352
D Y LL YA +G ++ + +K + + +M+ YS +T +K
Sbjct: 540 EADVICYSALLNAYAEAGFAREAQQTLDSLKAAGFVPDTIVYTSMMKLYSNLGLTAEAEK 599
Query: 353 I-EALMRLIPE 362
I E + RL P+
Sbjct: 600 IYEEISRLSPD 610
>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Cucumis sativus]
gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Cucumis sativus]
Length = 844
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 148/345 (42%), Gaps = 16/345 (4%)
Query: 173 DLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
D DL E N+ L+ T + ++ A GL ++ + F +LK + P VTYN
Sbjct: 285 DKILDLLDEMRNEGLQFDEFTCSTVISACGREGLINEAKEFFVELK-SSGYEPGTVTYNA 343
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L+ VFG+ + +E++D+N + + TYN L+A Y+ A + + + M
Sbjct: 344 LLQVFGKAGIYSEALNILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKG 403
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351
VMP+ TY ++ Y +G + +++ +K +++ K S ++ +
Sbjct: 404 VMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMI 463
Query: 352 KIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT---TVRIMRC 408
KI + MR+ R N LL K K +N F +
Sbjct: 464 KILSDMRINGCPPNRITWNTLLAMCGDKGK-----HKFVNHVFREMKNCGFEPGKDTFNT 518
Query: 409 IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK 468
++S+Y RC + A AG+ C + Y++ + A + + ESVL +M N
Sbjct: 519 LISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAAESVLLDMRNKG 578
Query: 469 IDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
++ +F +M + YA G R + ++ K+ YD + FPS
Sbjct: 579 FKPNETSFSLMLHCYAKGGNVRGLERI----GKDIYDGQI--FPS 617
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ Y G K + + + L K SP +V+YNT+I F R L+ E
Sbjct: 690 TYNSLMNMYARRGECWKAEEILKGLIKSGE-SPDLVSYNTIIKGFCRQGLMQEAIRVMSE 748
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + P +FTYN ++GY M+ +V+E+ M P+ TY +++ GY +
Sbjct: 749 MTTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTYKIIVDGYCKA 806
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 117/281 (41%), Gaps = 54/281 (19%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA--F 249
T+N LL G +FR++K P T+NTLIS +GR ++AA +
Sbjct: 480 TWNTLLAMCGDKGKHKFVNHVFREMKN-CGFEPGKDTFNTLISAYGRC--GSELDAAKMY 536
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
E+ + +P TYN L+ W E + M+ P+ ++ L+L YA
Sbjct: 537 DEMMKAGFTPCATTYNALLNALARRGDWKAAESVLLDMRNKGFKPNETSFSLMLHCYAKG 596
Query: 310 GNLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKC-SVTDRIKKIEALMRLIPEKEY 365
GN+ +E+I K DG+ FP L+R +I A KC +V + E LM+ Y
Sbjct: 597 GNVRGLERIG---KDIYDGQIFPSWVLLRTLILANFKCRAVRGMERAFEELMK----NGY 649
Query: 366 RPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLA 423
+P + + ++ ++AK + E +K ++ ++R
Sbjct: 650 KPDMVIFNSMLSIFAKNNMYERAQKMLD-------------LIR---------------- 680
Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
+G + Y+S M MYA + + E +LK +
Sbjct: 681 -------ESGLQPDLVTYNSLMNMYARRGECWKAEEILKGL 714
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N++L + N + ++ Q + DL +E+ + P +VTYN+L++++ R E + +
Sbjct: 656 FNSMLSIFAKNNMYERAQKML-DLIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKGL 714
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
S SP++ +YN +I G+ + + + M + P TY + GYA G
Sbjct: 715 IKSGESPDLVSYNTIIKGFCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRGMF 774
Query: 313 PRMEKI 318
++++
Sbjct: 775 AEVDEV 780
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
F +L K P +V +N+++S+F + + + + I++S L P++ TYN L+ Y
Sbjct: 641 FEELMKNG-YKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSLMNMYA 699
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
K EEI + + PD +Y +++G+ G
Sbjct: 700 RRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQG 737
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
Query: 175 AADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A + + NK K T ++ +L Y G + + +D+ + I PS V TLI
Sbjct: 567 AESVLLDMRNKGFKPNETSFSLMLHCYAKGGNVRGLERIGKDIY-DGQIFPSWVLLRTLI 625
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ V ME AF+E+ + P++ +N +++ + M+ + +++ +++ +
Sbjct: 626 LANFKCRAVRGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQ 685
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
PD TY L+ YA G + E E++K + E P
Sbjct: 686 PDLVTYNSLMNMYARRGECWKAE---EILKGLIKSGESP 721
>gi|297792071|ref|XP_002863920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309755|gb|EFH40179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 498
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 88/366 (24%), Positives = 150/366 (40%), Gaps = 23/366 (6%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNA 195
AL+V R Q Y + Y K I G+ + A +LF E N+ + Y A
Sbjct: 136 ALQVFELLREQLWYKPNVGI--YVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTA 193
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
LL AY +G D +L +K N P + TY+ LI F ++ D + +++
Sbjct: 194 LLSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVHDLLSDMRRL 253
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
+ PN T+ + + + QM+ PD+ T LR + +G + M
Sbjct: 254 GIRPNTITFVEMES------------TLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMM 301
Query: 316 EKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV---L 372
E YE K G E P IR + KK+ A+M + + Y W V +
Sbjct: 302 ENCYE--KFQSSGIE-PNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHY-SWTIVTYNV 357
Query: 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA 432
+I + + L++ME + + + + + + +V +Y R DK+ ++ E++
Sbjct: 358 VIDAFGRAGDLKQME-YLFRLMQSERIIPSCVTLCSLVRAYGRAGKADKIGGVLRFIENS 416
Query: 433 GWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
RL ++ + Y + EM+ VL+ ME K T+ M AY G V
Sbjct: 417 DIRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHV 476
Query: 493 NQVLGL 498
++ G+
Sbjct: 477 KELHGV 482
>gi|9758872|dbj|BAB09426.1| unnamed protein product [Arabidopsis thaliana]
Length = 495
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 108/473 (22%), Positives = 190/473 (40%), Gaps = 55/473 (11%)
Query: 63 VRLLSETLTYPDARVRKDLTQTVS-ALRD----ELLANVDDL----------DKVFRVLD 107
VR +S + P+ + D + S +LR+ + L N +D+ DK ++
Sbjct: 27 VRCISISPREPNYAITSDKSNNTSLSLRETRQSKWLINAEDVNERDSKEIKEDKNTKIAS 86
Query: 108 EKGSCLFRRHSNGYAFVELMKQLGSR---PRLALEVLNWRRRQAGYGTPMTKEE------ 158
K + R + +E K+ GS+ PR LE L+ R + + + E
Sbjct: 87 RKAISIILRREATKSIIE--KKKGSKKLLPRTVLESLHERITALRWESAIQVFELLREQL 144
Query: 159 --------YTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKC 209
Y K I G+ + A +LF E N+ + Y AL+ AY +G D
Sbjct: 145 WYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDAA 204
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+L +K N P + TY+ LI F ++ D ++ +++ + PN T+ + +
Sbjct: 205 FTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITFVEMES 264
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329
+ QM+ PD+ T LR + +G + ME YE K G
Sbjct: 265 ------------TLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYE--KFQSSGI 310
Query: 330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV---LLIRVYAKEDCLEEM 386
E P IR + KK+ A+M + + Y W V ++I + + L++M
Sbjct: 311 E-PNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHY-SWTIVTYNVVIDAFGRAGDLKQM 368
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446
E + + V + +V +Y R + DK+ ++ E++ RL ++ +
Sbjct: 369 EYLFRLMQSERIFPSCVTLC-SLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVD 427
Query: 447 MYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
Y + EM+ VL+ ME K T+ M AY G V ++ G++
Sbjct: 428 AYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKELHGVV 480
>gi|75265624|sp|Q9SCP4.1|PP279_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g53170
gi|6630737|emb|CAB64220.1| nodulin / glutamate-ammonia ligase-like protein [Arabidopsis
thaliana]
Length = 447
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 93/385 (24%), Positives = 170/385 (44%), Gaps = 18/385 (4%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TI 190
+R + AL++ N R+Q Y P K YTK K G D A+ LF ++ LK TI
Sbjct: 72 NRWQSALKIFNLLRKQHWY-EPRCKT-YTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTI 129
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
Y +L+ Y + L DK S +K ++ P + T+ LIS +L D +++
Sbjct: 130 DVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVL 189
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHS 309
E+ + + TYN +I GY A M+ ++E + M++ G +PD T ++ Y +
Sbjct: 190 EMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNG 249
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
N+ +ME Y + + +I ++ K + KK+ ++M + EK +
Sbjct: 250 RNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGM---YKKMCSVMDFM-EKRFFSLT 305
Query: 370 NV---LLIRVYAKEDCLEEMEKSINDAFEHK--TSVTTVRIMRC-IVSSYFRCNAVDKLA 423
V ++I + K +E+M+ D F V I C +V++Y + V K+
Sbjct: 306 TVTYNIVIETFGKAGRIEKMD----DVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKID 361
Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
+ +++ ++ L ++ + Y + M+ + +ME K K TF M Y
Sbjct: 362 SVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTY 421
Query: 484 ATCGQRRKVNQVLGLMCKNGYDVPV 508
G V ++ M +G ++ +
Sbjct: 422 TAHGIFDAVQELEKQMISSGENLDI 446
>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 857
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 149/321 (46%), Gaps = 30/321 (9%)
Query: 32 PLSVFTLTKSPNHSFTRDLCAPAT---------HTVFPTLVRLLSETLTYPDARVRKDLT 82
PL + TLT SP F+ L PAT T P LL P+ + +
Sbjct: 2 PLKM-TLTLSP---FSPTLLTPATTLRQLLFTNFTPSPKRRLLLQARAAKPNVLI--PIN 55
Query: 83 QTVSALRDELLANVDDLDKVFRVLDEKGS---CL--FRRHSNGYAFVELMKQLGSRP--R 135
+V+ + + +V+ L L +GS CL F+ + F + K+ R +
Sbjct: 56 PSVTVEKGKYSYDVETLINRLTALPPRGSIARCLDPFKNKLSLNDFALVFKEFAQRGDWQ 115
Query: 136 LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTYN 194
+L + + +RQ + P + +T I GR +D ++F E +N ++T+ +Y
Sbjct: 116 RSLRLFKYMQRQI-WCKP-NEHIHTIMITLLGREGLLDKCREVFDEMPSNGVVRTVYSYT 173
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV-DHMEAAFQEIK 253
A++ AY NG L +K+E +SPSI+TYNT+I+ R L + + F E++
Sbjct: 174 AIINAYGRNGQFHASLELLNGMKQE-RVSPSILTYNTVINACARGGLDWEGLLGLFAEMR 232
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
+ P+V TYN L+ + + E +++ M ++PD NTY L++ + G L
Sbjct: 233 HEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTF---GKLN 289
Query: 314 RMEKIYELVKHHVDGKEFPLI 334
R+EK+ EL++ G P I
Sbjct: 290 RLEKVSELLREMECGGNLPDI 310
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/363 (20%), Positives = 147/363 (40%), Gaps = 5/363 (1%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLS-DK 208
G T YT I GR + +L + + +I TYN ++ A GL +
Sbjct: 164 GVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEG 223
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
LF +++ E I P ++TYNTL+ L D E F+ + +S + P++ TY+YL+
Sbjct: 224 LLGLFAEMRHEG-IQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLV 282
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
+ KV E+ + M+ G +PD +Y +LL YA G++ ++ ++
Sbjct: 283 QTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCV 342
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEK 388
++ Y K D ++ + M++ N+ LI+V+ + +E+
Sbjct: 343 ANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNI-LIQVFGEGGYFKEVVT 401
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
+D E ++ ++ + + + + G Y + +
Sbjct: 402 LFHDMAEENVE-PNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAF 460
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV 508
EE + M + + +T+ + +A+A G ++ +L M ++G V
Sbjct: 461 GQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDV 520
Query: 509 NAF 511
++F
Sbjct: 521 HSF 523
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/384 (21%), Positives = 143/384 (37%), Gaps = 64/384 (16%)
Query: 62 LVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGY 121
+ R ++E+ PD L QT L ++ + ++ R ++ G+ N
Sbjct: 262 VFRTMNESGIVPDINTYSYLVQTFGKLN-----RLEKVSELLREMECGGNLPDITSYN-- 314
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
+E +LGS E + R+ G Y+ + G+ D DLF E
Sbjct: 315 VLLEAYAELGSIK----EAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLE 370
Query: 182 AANKHLK-TIGTYNALL-----GAYM---------------------YNGLSDKCQ--SL 212
+ GTYN L+ G Y Y GL C L
Sbjct: 371 MKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGL 430
Query: 213 FRDLKK------EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
+ D KK E + PS Y +I FG+ L + F + + +P V TYN
Sbjct: 431 YEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNS 490
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHH 325
LI + ++ + E I M + D +++ ++ + G K Y E+ K +
Sbjct: 491 LIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKAN 550
Query: 326 VDGKEFPLIRAMICAYSKCSVTD----RIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED 381
+ E L A++ Y + D + ++I+A L Y +++ +YAK D
Sbjct: 551 CEPNELTL-EAVLSIYCSAGLVDEGEEQFQEIKASGILPSVMCY-----CMMLALYAKND 604
Query: 382 CLEEMEKSINDAFEHKTSVTTVRI 405
L NDA+ ++ T+R+
Sbjct: 605 RL-------NDAYNLIDAMITMRV 621
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/284 (17%), Positives = 120/284 (42%), Gaps = 7/284 (2%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
LF+ ++++ P+ + +I++ GR L+D F E+ + + V++Y +I Y
Sbjct: 120 LFKYMQRQIWCKPNEHIHTIMITLLGREGLLDKCREVFDEMPSNGVVRTVYSYTAIINAY 179
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKE 330
+ E+ MK V P TY ++ A G + + ++ ++H +
Sbjct: 180 GRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPD 239
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEK 388
++ A + + D + E + R + E P +N L++ + K + LE++ +
Sbjct: 240 VITYNTLLGACAHRGLGD---EAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSE 296
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
+ + E ++ + ++ +Y ++ + ++ ++AG + Y + +Y
Sbjct: 297 LLRE-MECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLY 355
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
R +++ + EM+ D T+ I+ + G ++V
Sbjct: 356 GKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEV 399
>gi|302823876|ref|XP_002993586.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
gi|300138598|gb|EFJ05361.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
Length = 451
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 125/272 (45%), Gaps = 19/272 (6%)
Query: 172 VDLAADLFAEAANKHLKT-------IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
+D A D F H+KT + TYN L A GL+DK ++LF +L + ++ P
Sbjct: 151 LDSALDHFG-----HMKTSVHSCPSLATYNMLTRACAQAGLTDKAEALFLELLRREDLKP 205
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
T+N ++ + + L ME +E+ + + P++ T+N LI Y A + K+E Y
Sbjct: 206 DAYTFNGIMDAYAKKGLYRDMEYKLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERTY 265
Query: 285 Q-MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+ ++ P T+ +L Y S L +ME++ + G + ++ +Y +
Sbjct: 266 KSLVNLSGCKPSATTFNSMLASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGR 325
Query: 344 CSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA--FEHKTSVT 401
D ++K M P K L+VLL R YA+ ++E E +A + K +V+
Sbjct: 326 AGELDTMRKCFDKMVRSPVKPQVSTLDVLL-RAYAEHGLVDEAEALFINASKLDIKPAVS 384
Query: 402 TVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
+ I + +Y +DK+ + + E +G
Sbjct: 385 SYLI---LFKAYGEERQLDKMTVLMSKMEQSG 413
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/403 (20%), Positives = 166/403 (41%), Gaps = 62/403 (15%)
Query: 114 FRRHSNGYAFVELMKQLG--SRPRLALEVLNW-RRRQAGYGTPMTKEEYTKGIKFAGRIN 170
+ RH F+ L+ ++G + LAL + W ++ +A + + K I G+
Sbjct: 53 YARHIPVDGFMALVDEIGRLNDWALALALFKWLQKNEARLSNRDLEVAHAKIIDTMGKQG 112
Query: 171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDL----------KKEA 220
+ LA+ +F++ +T NA++ A++ +C+++ R L K
Sbjct: 113 QLRLASWIFSQLQLSS-RTTPVLNAIIMAHL------RCKNVARALDSALDHFGHMKTSV 165
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEI-KDSNLSPNVFTYNYLIAGYMTAWMWGK 279
+ PS+ TYN L + L D EA F E+ + +L P+ +T+N ++ Y ++
Sbjct: 166 HSCPSLATYNMLTRACAQAGLTDKAEALFLELLRREDLKPDAYTFNGIMDAYAKKGLYRD 225
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHVDGKEFPLIRAMI 338
+E + M V PD T+ +L+ Y +G+ +ME+ Y+ LV +M+
Sbjct: 226 MEYKLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSATTFNSML 285
Query: 339 CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT 398
+Y + +++++ L+R+ D
Sbjct: 286 ASYGQSRELGKMEQV-------------------LVRM---------------DMAGLGP 311
Query: 399 SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEME 458
+TT ++SSY R +D + + + + S + YA V+E E
Sbjct: 312 DLTT---FNTLMSSYGRAGELDTMRKCFDKMVRSPVKPQVSTLDVLLRAYAEHGLVDEAE 368
Query: 459 SVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501
++ I + ++ I++ AY G+ R+++++ LM K
Sbjct: 369 ALFINASKLDIKPAVSSYLILFKAY---GEERQLDKMTVLMSK 408
>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 859
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 91/178 (51%), Gaps = 6/178 (3%)
Query: 159 YTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I GR +D ++F E +N +T+ Y A++ AY NG L +K
Sbjct: 139 YTIMITLLGREGLLDKCREVFDEMPSNGVARTVYVYTAVINAYGRNGQFHASLELLNGMK 198
Query: 218 KEANISPSIVTYNTLISVFGRLLLV-DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
+E +SPSI+TYNT+I+ R L + + F E++ + P+V TYN L+ +
Sbjct: 199 QE-RVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGL 257
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
+ E +++ M ++PD NTY L++ + G L R+EK+ EL++ G P I
Sbjct: 258 GDEAEMVFRTMNESGIVPDINTYSYLVQTF---GKLNRLEKVSELLREMESGGNLPDI 312
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 75/363 (20%), Positives = 146/363 (40%), Gaps = 5/363 (1%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLS-DK 208
G T YT I GR + +L + + +I TYN ++ A GL +
Sbjct: 166 GVARTVYVYTAVINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEG 225
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
LF +++ E I P ++TYNTL+ L D E F+ + +S + P++ TY+YL+
Sbjct: 226 LLGLFAEMRHEG-IQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLV 284
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
+ KV E+ + M++G +PD +Y +LL YA G++ ++ ++
Sbjct: 285 QTFGKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCV 344
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEK 388
++ Y K D ++ I M++ N+ LI+V+ + +E+
Sbjct: 345 ANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNI-LIQVFGEGGYFKEVVT 403
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
+D E + ++ + + + + G Y + +
Sbjct: 404 LFHDMVEENVE-PNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAF 462
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV 508
EE V M + + +T+ +A+A G ++ +L M ++G V
Sbjct: 463 GQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDV 522
Query: 509 NAF 511
++F
Sbjct: 523 HSF 525
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/371 (19%), Positives = 151/371 (40%), Gaps = 14/371 (3%)
Query: 97 DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTK 156
D+ + VFR ++E G N Y++ L++ G RL R ++G P
Sbjct: 259 DEAEMVFRTMNESG---IVPDINTYSY--LVQTFGKLNRLEKVSELLREMESGGNLPDIT 313
Query: 157 EEYTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRD 215
Y ++ + ++ A D+F + A + TY+ LL Y +G D + +F +
Sbjct: 314 S-YNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDIFLE 372
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+K +N P TYN LI VFG + F ++ + N+ PN+ TY LI
Sbjct: 373 MKV-SNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGG 431
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
++ ++I M ++P + Y ++ + + ++ +
Sbjct: 432 LYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYN 491
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDA 393
+ I A+++ + K+ EA++ + E + ++ +I+ + + EE KS +
Sbjct: 492 SFIHAFARGGL---YKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVE- 547
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
E + ++S Y VD+ + +++G Y + +YA R
Sbjct: 548 MEKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKASGILPSVMCYCLMLALYAKNDR 607
Query: 454 VEEMESVLKEM 464
+ + +++ EM
Sbjct: 608 LNDAYNLIDEM 618
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 90/385 (23%), Positives = 146/385 (37%), Gaps = 66/385 (17%)
Query: 62 LVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGY 121
+ R ++E+ PD L QT L + L+KV +L E S Y
Sbjct: 264 VFRTMNESGIVPDINTYSYLVQTFGKL--------NRLEKVSELLREMESGGNLPDITSY 315
Query: 122 -AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
+E +LGS + A++V +R+ QA G Y+ + G+ D D+F
Sbjct: 316 NVLLEAYAELGS-IKEAMDV--FRQMQAA-GCVANAATYSVLLNLYGKHGRYDDVRDIFL 371
Query: 181 EAANKHLK-TIGTYNALL-----GAYM---------------------YNGLSDKCQ--S 211
E + GTYN L+ G Y Y GL C
Sbjct: 372 EMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNMETYEGLIFACGKGG 431
Query: 212 LFRDLKK------EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
L+ D KK E I PS Y +I FG+ L + F + + +P V TYN
Sbjct: 432 LYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTVETYN 491
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKH 324
I + ++ + E I M + D +++ +++ + G K Y E+ K
Sbjct: 492 SFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKA 551
Query: 325 HVDGKEFPLIRAMICAYSKCSVTD----RIKKIEALMRLIPEKEYRPWLNVLLIRVYAKE 380
+ + E L ++ Y + D + ++I+A L Y L++ +YAK
Sbjct: 552 NCEPNELTL-EVVLSVYCSAGLVDESEEQFQEIKASGILPSVMCY-----CLMLALYAKN 605
Query: 381 DCLEEMEKSINDAFEHKTSVTTVRI 405
D L NDA+ + T+R+
Sbjct: 606 DRL-------NDAYNLIDEMITMRV 623
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/284 (17%), Positives = 121/284 (42%), Gaps = 7/284 (2%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
LF+ ++++ P+ Y +I++ GR L+D F E+ + ++ V+ Y +I Y
Sbjct: 122 LFKYMQRQIWCKPNEHIYTIMITLLGREGLLDKCREVFDEMPSNGVARTVYVYTAVINAY 181
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKE 330
+ E+ MK V P TY ++ A G + + ++ ++H +
Sbjct: 182 GRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPD 241
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEK 388
++ A + + D + E + R + E P +N L++ + K + LE++ +
Sbjct: 242 VITYNTLLGACAHRGLGD---EAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSE 298
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
+ + E ++ + ++ +Y ++ + + ++ ++AG + Y + +Y
Sbjct: 299 LLRE-MESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLY 357
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
R +++ + EM+ D T+ I+ + G ++V
Sbjct: 358 GKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEV 401
>gi|224114223|ref|XP_002316701.1| predicted protein [Populus trichocarpa]
gi|222859766|gb|EEE97313.1| predicted protein [Populus trichocarpa]
Length = 386
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 5/173 (2%)
Query: 154 MTKEEYT-KGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQS 211
M+KE + + I G + D A +F E + +T+ ++NALLGA + + D+ +
Sbjct: 96 MSKEGFNARLISLYGSVGMFDHARKVFDEMRERQCARTVMSFNALLGACLSSKNFDEVEG 155
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
LFR L KE I P +++YNT+I F + +D + E+K L P++ T+N L+ G+
Sbjct: 156 LFRGLSKEIKIEPDLISYNTVIKAFCEMGSLDSAVSLLDEMKRKGLEPDLITFNTLLHGF 215
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
+ E I++ MK V PD +Y L G RME + ++V+
Sbjct: 216 YAKGRFVDGERIWEQMKEKNVEPDVRSYNAKLLGLTLE---KRMEDVVKVVEE 265
>gi|359476047|ref|XP_002281582.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Vitis vinifera]
gi|296081891|emb|CBI20896.3| unnamed protein product [Vitis vinifera]
Length = 420
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 172/377 (45%), Gaps = 16/377 (4%)
Query: 97 DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMT 155
+ + ++ VLD + + F+ S+ +++ L+ L S P A VL WR +
Sbjct: 47 ESISRIKTVLDSEDNFTFK--SSDFSWDILLTTLKSSSPAKAHLVLEWRLEKMVRDNERD 104
Query: 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFR 214
Y + I ++ NV A +F +K T +NAL+ + +G SLF
Sbjct: 105 LVPYLELIFLCSKVQNVPFAMRVFNSMEAHGIKLTSSVFNALIYTCLSSGNVMTALSLFE 164
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
++ N P+ TYNT ISV+ L M+A + K + S ++ TY LI+G + +
Sbjct: 165 IMQSSENCKPNSETYNTFISVYSNLGNDKAMQAWYLAQKGAGFSADLRTYESLISGCVRS 224
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK---EF 331
+ + Y+ M +MP+ +LRG ++ ++E +L+K +DG+
Sbjct: 225 RNFDCADRFYEEMMLSGIMPNGQILENILRGLCEQRSISKVE---QLLKFMMDGEWEINV 281
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL---LIRVYAKEDCLEEMEK 388
+ ++ Y + ++++ E L+ L+ + L + +IR++A D L++ME
Sbjct: 282 SMAEKLMGLYFEHGTVEKME--ELLLNLMNSNQSFAVLQQVHCGIIRMHAMLDRLDDMEY 339
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
S+ + S + +V +YFR A ++L F+ + + ++L +S Y + Y
Sbjct: 340 SVGRMLKQGMSFRCPDDIEKVVCAYFRREAYERLDLFLGHIKGS-YKLTKSTYDLLVAGY 398
Query: 449 ASQRRVEEMESVLKEME 465
E+++ V+ M+
Sbjct: 399 RRAGLSEKLDLVMDGMK 415
>gi|302822123|ref|XP_002992721.1| hypothetical protein SELMODRAFT_135826 [Selaginella moellendorffii]
gi|300139462|gb|EFJ06202.1| hypothetical protein SELMODRAFT_135826 [Selaginella moellendorffii]
Length = 449
Score = 84.7 bits (208), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 125/272 (45%), Gaps = 19/272 (6%)
Query: 172 VDLAADLFAEAANKHLKT-------IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
+D A D F H+KT + TYN L A GL+DK ++LF +L + ++ P
Sbjct: 149 LDSALDHFG-----HMKTSVHSCPSLATYNMLTRACAQAGLTDKAEALFLELLRRDDLKP 203
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
T+N ++ + + L ME +E+ + + P++ T+N LI Y A + K+E Y
Sbjct: 204 DAYTFNGIMDAYAKKGLYRDMEYKLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERTY 263
Query: 285 Q-MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+ ++ P T+ +L Y S L +ME++ + G + ++ +Y +
Sbjct: 264 KSLVNLSGCKPSATTFNSMLASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGR 323
Query: 344 CSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA--FEHKTSVT 401
D ++K M P K L+VLL R YA+ ++E E +A + K +V+
Sbjct: 324 AGELDTMRKCFDKMVRSPVKPQVSTLDVLL-RAYAEHGLVDEAEALFINASKLDIKPAVS 382
Query: 402 TVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
+ I + +Y +DK+ + + E +G
Sbjct: 383 SYLI---LFKAYGEERQLDKMTVLMSKMEQSG 411
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 81/403 (20%), Positives = 167/403 (41%), Gaps = 62/403 (15%)
Query: 114 FRRHSNGYAFVELMKQLG--SRPRLALEVLNW-RRRQAGYGTPMTKEEYTKGIKFAGRIN 170
+ RH F+ L+ ++G + LAL + W ++ +A + + K I G+
Sbjct: 51 YARHIPVDGFMALVDEIGRLNDWALALALFKWLQKNEARLSNRDLEVAHAKIIDTMGKQG 110
Query: 171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL----------FRDLKKEA 220
+ LA+ +F++ +T +NA++ A++ +C+++ F +K
Sbjct: 111 QLRLASWIFSQLQLSS-RTTPVFNAIIMAHL------RCKNVARALDSALDHFGHMKTSV 163
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEI-KDSNLSPNVFTYNYLIAGYMTAWMWGK 279
+ PS+ TYN L + L D EA F E+ + +L P+ +T+N ++ Y ++
Sbjct: 164 HSCPSLATYNMLTRACAQAGLTDKAEALFLELLRRDDLKPDAYTFNGIMDAYAKKGLYRD 223
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHVDGKEFPLIRAMI 338
+E + M V PD T+ +L+ Y +G+ +ME+ Y+ LV +M+
Sbjct: 224 MEYKLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLSGCKPSATTFNSML 283
Query: 339 CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT 398
+Y + +++++ L+R+ D
Sbjct: 284 ASYGQSRELGKMEQV-------------------LVRM---------------DMAGLGP 309
Query: 399 SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEME 458
+TT ++SSY R +D + + + + S + YA V+E E
Sbjct: 310 DLTT---FNTLMSSYGRAGELDTMRKCFDKMVRSPVKPQVSTLDVLLRAYAEHGLVDEAE 366
Query: 459 SVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501
++ I + ++ I++ AY G+ R+++++ LM K
Sbjct: 367 ALFINASKLDIKPAVSSYLILFKAY---GEERQLDKMTVLMSK 406
>gi|356527376|ref|XP_003532287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Glycine max]
Length = 515
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 140/313 (44%), Gaps = 10/313 (3%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y K I G+ + A +LF ++ + +Y ALL AY +GL DK SL ++K
Sbjct: 160 YIKLIVMLGKCKQPEKAHELFQAMVDEGCVLDCESYTALLSAYSRSGLLDKAFSLLEEMK 219
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P + TY+ L+ ++ D +++ ++ + + PN TYN LI Y A +
Sbjct: 220 NTPGCQPDVQTYSILLKSCLQVFAFDKIQSLLSDMTNRGIKPNTVTYNTLIDAYGKARKF 279
Query: 278 GKVEEI-YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336
++E I +M+ PD T LR + + G + MEK YE ++
Sbjct: 280 SEMESILVEMLADRYCQPDVWTMNSTLRAFGNIGQIETMEKCYEKFQNAGIQPNVQTFNI 339
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV---LLIRVYAKEDCLEEMEKSINDA 393
++ +Y K KK+ A+M + +K + W V ++I + K L++ME
Sbjct: 340 LLDSYGK---AQDYKKMSAVMEYM-QKYHYSWTIVTFNIVIDAFGKAGDLKQMEYLFRLM 395
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
+ + V + +V +Y R +K++ ++ E++ L ++ + YA
Sbjct: 396 RSERIKPSCVTLC-SLVRAYARAGKPEKISGVLRFVENSDVLLDTVFFNCLVDAYARLGC 454
Query: 454 VEEMESVLKEMEN 466
+ EM+ VL+ M+
Sbjct: 455 LAEMKGVLEMMKQ 467
>gi|449441652|ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Cucumis sativus]
gi|449522692|ref|XP_004168360.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Cucumis sativus]
Length = 496
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 148/362 (40%), Gaps = 12/362 (3%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
ALEV R Q Y + Y K + GR A LF + + T Y A
Sbjct: 125 ALEVFEMLREQPFYEP--KEGTYMKLLVLLGRSGQPHRARLLFDTMVQERCEPTPELYTA 182
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
LL AY N L D S +K P + TY+ LI + +E+ ++E+ +
Sbjct: 183 LLAAYCRNNLIDDAFSTLNLMKTLPRCQPDVYTYSILIKACVDDSRFEIVESLYEEMAER 242
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEI-YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
++PN T N +++GY + ++E++ M+++ PD T ++L + + G++
Sbjct: 243 LITPNTVTQNIVLSGYGKIGKYDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGHIEM 302
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL-- 372
ME+ YE ++ E +I AY K + D++ + MR K PW
Sbjct: 303 MERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMR----KLQFPWTTSTYN 358
Query: 373 -LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
+I +A + ME + T + C+++ Y K+ VK A
Sbjct: 359 NVIEAFADVGDAKNMEYTFEQMRAEGMRADT-KTFCCLINGYANAGLFHKVIGSVKLAGK 417
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
S Y++ + A + EM+ V K M++ KT+ IM AY G +
Sbjct: 418 LEIPENTSFYNAVISACAKAEDLMEMDRVFKRMKDKHCQPDNKTYSIMMEAYGKEGMNDR 477
Query: 492 VN 493
V+
Sbjct: 478 VH 479
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/322 (20%), Positives = 126/322 (39%), Gaps = 44/322 (13%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
GTY LL +G + + LF + +E P+ Y L++ + R L+D +
Sbjct: 143 GTYMKLLVLLGRSGQPHRARLLFDTMVQE-RCEPTPELYTALLAAYCRNNLIDDAFSTLN 201
Query: 251 EIKD-SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+K P+V+TY+ LI + + VE +Y+ M + P+T T ++L GY
Sbjct: 202 LMKTLPRCQPDVYTYSILIKACVDDSRFEIVESLYEEMAERLITPNTVTQNIVLSGYGKI 261
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP-- 367
G +MEK+ L+ ++ RP
Sbjct: 262 GKYDQMEKV-------------------------------------LIGMLESTTCRPDV 284
Query: 368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
W +++ V+ + +E ME+ + F + R ++ +Y + DK+++ ++
Sbjct: 285 WTMNIILSVFGNKGHIEMMERWY-EKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVME 343
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+ S Y++ + +A + ME ++M + KTF + YA G
Sbjct: 344 YMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAEGMRADTKTFCCLINGYANAG 403
Query: 488 QRRKVNQVLGLMCKNGYDVPVN 509
KV + L K ++P N
Sbjct: 404 LFHKVIGSVKLAGK--LEIPEN 423
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 7/166 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N L+GAY + DK S+ ++K + TYN +I F + +ME F++
Sbjct: 321 TFNILIGAYGKKRMYDKMSSVMEYMRK-LQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQ 379
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + + T+ LI GY A ++ KV ++ + +T+ Y ++ A + +
Sbjct: 380 MRAEGMRADTKTFCCLINGYANAGLFHKVIGSVKLAGKLEIPENTSFYNAVISACAKAED 439
Query: 312 LPRMEKIYELVKH---HVDGKEFPLIRAMICAYSKCSVTDRIKKIE 354
L M+++++ +K D K + + M+ AY K + DR+ +E
Sbjct: 440 LMEMDRVFKRMKDKHCQPDNKTYSI---MMEAYGKEGMNDRVHYLE 482
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 102/234 (43%), Gaps = 6/234 (2%)
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVM-PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
++ ++T W + E+++M++ P P TY+ LL SG R +++ +
Sbjct: 113 LSDHITNKRWLQALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRARLLFDTMVQER 172
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM 386
L A++ AY + ++ D LM+ +P + + +LI+ + E +
Sbjct: 173 CEPTPELYTALLAAYCRNNLIDDAFSTLNLMKTLPRCQPDVYTYSILIKACVDDSRFEIV 232
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN-FVKRAESAGWRLCRSLYHSKM 445
E + E + TV ++S Y + D++ + ES R + +
Sbjct: 233 ESLYEEMAERLITPNTV-TQNIVLSGYGKIGKYDQMEKVLIGMLESTTCRPDVWTMNIIL 291
Query: 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
++ ++ +E ME ++ N+ I+ +TF I+ AY G++R +++ +M
Sbjct: 292 SVFGNKGHIEMMERWYEKFRNFGIEPETRTFNILIGAY---GKKRMYDKMSSVM 342
>gi|357436533|ref|XP_003588542.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477590|gb|AES58793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 428
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/339 (22%), Positives = 154/339 (45%), Gaps = 12/339 (3%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIG 191
+P L LE W + +++ I G++ NV L ++F +K T
Sbjct: 82 KPNLVLE---WILEKLLKENVKDHGRFSELIFLCGKLKNVQLGINVFTSMEGVGVKPTSL 138
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+N+L+ A + + SLF ++ N P TYN IS F + VD M A +
Sbjct: 139 VFNSLISACLSSHDIVTAYSLFEIMESSENYKPDFHTYNNFISAFSKSGNVDAMLAWYSA 198
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
K + L P++ T+ +I+G + + + + +++ MK ++P+ +L+G+ +
Sbjct: 199 KKATGLGPDLQTFESVISGCVNSKNYEIADRVFEEMKISEMIPNVTILESMLKGFCSQKS 258
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIP----EKEYRP 367
L R + ++ V + + ++ Y + +++K+E L+ I +
Sbjct: 259 LCRANEFFKFVLDNRWQISETMAAMLVVLYHE---QGQVEKMEELLETITSYPIDSGVLS 315
Query: 368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
++ ++ +YA D L+E+E S+ + S T+ + ++ SYFR A D+L F++
Sbjct: 316 QIHCGIVTMYAMLDRLDEVELSVGRMLKQGMSFTSSDDVEKVICSYFRKEAYDRLDIFLE 375
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466
++ + RS Y + Y E+++ VL +ME+
Sbjct: 376 CIKNC-YVHTRSTYDLLISGYRRANLHEKVDLVLADMES 413
>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 804
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 156/344 (45%), Gaps = 17/344 (4%)
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G + AG+ D A +F E K I T+NAL+ + G + +F D+K
Sbjct: 378 GFEKAGKD---DFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDIKL-C 433
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
N SP IVT+NTL++VFG+ + + F+E+K + T+N LI+ Y + +
Sbjct: 434 NCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQA 493
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP---LIRAM 337
+Y+ M V+PD +TY +L A G + EK+ ++ DG+ P ++
Sbjct: 494 MAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEME---DGRCKPNELSYSSL 550
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397
+ AY+ +R+ + + + L L++ V +K D L E E++ +
Sbjct: 551 LHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVL-VNSKSDLLIETERAFLELRRRG 609
Query: 398 TS--VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVE 455
S +TT+ M +S Y R V K + + + Y+S M MY+ +
Sbjct: 610 ISPDITTLNAM---LSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQ 666
Query: 456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
+ E +L+E+ + + ++ + YAY G+ ++ +++ M
Sbjct: 667 KSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEM 710
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/327 (21%), Positives = 142/327 (43%), Gaps = 9/327 (2%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I T+N LL + NG+ + +F+++K+ ++ T+NTLIS + R D A +
Sbjct: 439 IVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERD-TFNTLISAYSRCGSFDQAMAVY 497
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + ++ + P++ TYN ++A +W + E++ M+ G P+ +Y LL YA+
Sbjct: 498 KSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANG 557
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
+ RM E + L++ ++ SK +D + + E + + P +
Sbjct: 558 KEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSK---SDLLIETERAFLELRRRGISPDI 614
Query: 370 NVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVRIMRCIVSSYFRCNAVDKLANFV 426
L ++ +Y ++ + + + +N F H+T T ++ ++ Y R K +
Sbjct: 615 TTLNAMLSIYGRKQMVAKAHEILN--FMHETRFTPSLTTYNSLMYMYSRSENFQKSEEIL 672
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
+ G + R Y++ + Y R++E + EM++ + T+ YA
Sbjct: 673 REVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATYAAD 732
Query: 487 GQRRKVNQVLGLMCKNGYDVPVNAFPS 513
+ V+ M K G N + S
Sbjct: 733 SMFAEAIDVVRYMIKQGCKPDQNTYNS 759
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 130/304 (42%), Gaps = 42/304 (13%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKK-EAN-ISPSIVTYNTLISVFGRLLLVDHMEAAF 249
TYNALL + G S + Q + L++ EAN SP+ VTYN+LIS + + L++
Sbjct: 301 TYNALLDVF---GKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLK 357
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
++ + P+VFTY L++G+ A +++ M+A P+ T+ L++ + +
Sbjct: 358 TQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNR 417
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G M K+++ +K +C S VT W
Sbjct: 418 GKFAEMMKVFDDIK--------------LCNCSPDIVT--------------------WN 443
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
+L + ++ ++ I + V ++S+Y RC + D+ K
Sbjct: 444 TLLAV---FGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSM 500
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
AG S Y++ + A E+ E VL EME+ + ++ ++ + +AYA +
Sbjct: 501 LEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEI 560
Query: 490 RKVN 493
++N
Sbjct: 561 ERMN 564
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/394 (21%), Positives = 165/394 (41%), Gaps = 31/394 (7%)
Query: 126 LMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA 183
++K LG ++ LAL V +W R + IK G+ V AA L
Sbjct: 126 IIKALGFSNKCDLALAVFHWVRTNNSNTNLFSSSAIPVIIKILGKAGRVSSAASLLLALQ 185
Query: 184 NKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
N + + Y L+ AY +G +LF ++++ +P+++TYN +++V+G++ +
Sbjct: 186 NDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDG-CNPTLITYNVVLNVYGKMGMP 244
Query: 243 -DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301
++ A + ++ ++P+++TYN LI+ ++ + ++Q MK PD TY
Sbjct: 245 WSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNA 304
Query: 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIP 361
LL + S K+ + ++ + ++I AY+K + + ++ M
Sbjct: 305 LLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQM---V 361
Query: 362 EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC--NAV 419
K +P V+ L EK+ D F ++ MR + C NA+
Sbjct: 362 HKGIKP-------DVFTYTTLLSGFEKAGKDDF----AIQVFLEMRAVGCKPNICTFNAL 410
Query: 420 DKL-ANFVKRAESA----GWRLCRS-----LYHSKMVMYASQRRVEEMESVLKEMENYKI 469
K+ N K AE +LC +++ + ++ ++ + KEM+
Sbjct: 411 IKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGF 470
Query: 470 DCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ TF + AY+ CG + V M + G
Sbjct: 471 VAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAG 504
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ TYN+L+ Y + K + + R++ E + P ++YNT+I + R +
Sbjct: 648 SLTTYNSLMYMYSRSENFQKSEEILREVL-EKGMKPDRISYNTVIYAYCRNGRMKEASRI 706
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
F E+KDS L P+V TYN IA Y M+ + ++ + M PD NTY
Sbjct: 707 FSEMKDSALVPDVVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTY 757
>gi|334185941|ref|NP_190885.5| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|332645523|gb|AEE79044.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 499
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/364 (24%), Positives = 161/364 (44%), Gaps = 18/364 (4%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TI 190
+R + AL++ N R+Q Y P K YTK K G D A+ LF ++ LK TI
Sbjct: 122 NRWQSALKIFNLLRKQHWY-EPRCKT-YTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTI 179
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
Y +L+ Y + L DK S +K ++ P + T+ LIS +L D +++
Sbjct: 180 DVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVL 239
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHS 309
E+ + + TYN +I GY A M+ ++E + M++ G +PD T ++ Y +
Sbjct: 240 EMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNG 299
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
N+ +ME Y + + +I ++ K + KK+ ++M + EK +
Sbjct: 300 RNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGM---YKKMCSVMDFM-EKRFFSLT 355
Query: 370 NV---LLIRVYAKEDCLEEMEKSINDAFEHK--TSVTTVRIMRC-IVSSYFRCNAVDKLA 423
V ++I + K +E+M+ D F V I C +V++Y + V K+
Sbjct: 356 TVTYNIVIETFGKAGRIEKMD----DVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKID 411
Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
+ +++ ++ L ++ + Y + M+ + +ME K K TF M Y
Sbjct: 412 SVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTY 471
Query: 484 ATCG 487
G
Sbjct: 472 TAHG 475
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 84/168 (50%), Gaps = 1/168 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I T+N L+ ++ G+ K S+ D ++ S + VTYN +I FG+ ++ M+ F
Sbjct: 321 ITTFNILILSFGKAGMYKKMCSVM-DFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVF 379
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+++K + PN TY L+ Y A + K++ + + + V+ DT + ++ Y +
Sbjct: 380 RKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQA 439
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357
G+L M+++Y ++ + MI Y+ + D ++++E M
Sbjct: 440 GDLATMKELYIQMEERKCKPDKITFATMIKTYTAHGIFDAVQELEKQM 487
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 101/220 (45%), Gaps = 11/220 (5%)
Query: 176 ADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
AD+ + + L + T N+++G+Y K +S + + + P I T+N LI
Sbjct: 274 ADMIEDGDS--LPDVCTLNSIIGSYGNGRNMRKMESWYSRFQL-MGVQPDITTFNILILS 330
Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
FG+ + M + ++ S TYN +I + A K++++++ MK V P+
Sbjct: 331 FGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPN 390
Query: 296 TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA 355
+ TY L+ Y+ +G + +++ + + + + P +I AY + +K++
Sbjct: 391 SITYCSLVNAYSKAGLVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYI 450
Query: 356 LMRLIPEKEYRP--WLNVLLIRVYAKE---DCLEEMEKSI 390
M E++ +P +I+ Y D ++E+EK +
Sbjct: 451 QME---ERKCKPDKITFATMIKTYTAHGIFDAVQELEKQM 487
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 115/291 (39%), Gaps = 38/291 (13%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD-SNLSPNVFTYN 265
D+ LF + E + P+I Y +LISV+G+ L+D + + +K S+ P+VFT+
Sbjct: 161 DQASLLFEVMLSEG-LKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFT 219
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
LI+ + V+ I M V T TY ++ GY +G ME + L
Sbjct: 220 VLISCCCKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESV--LADMI 277
Query: 326 VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE 385
DG P + C++ +I Y + +
Sbjct: 278 EDGDSLPDV---------CTLNS------------------------IIGSYGNGRNMRK 304
Query: 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445
ME S F+ + ++ S+ + K+ + + E + L Y+ +
Sbjct: 305 ME-SWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFSLTTVTYNIVI 363
Query: 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
+ R+E+M+ V ++M+ + + T+ + AY+ G K++ VL
Sbjct: 364 ETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSVL 414
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 59/293 (20%), Positives = 105/293 (35%), Gaps = 37/293 (12%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F L+K+ P TY L V G D F+ + L P + Y LI+ Y
Sbjct: 130 IFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTIDVYTSLISVY 189
Query: 272 MTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+ + K + MK+ PD T+ +L+ G ++LVK V
Sbjct: 190 GKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGR-------FDLVKSIVLEMS 242
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI 390
+ + Y+ +I Y K EEME +
Sbjct: 243 YLGVGCSTVTYNT-----------------------------IIDGYGKAGMFEEMESVL 273
Query: 391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450
D E S+ V + I+ SY + K+ ++ R + G + + ++ ++ +
Sbjct: 274 ADMIEDGDSLPDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGK 333
Query: 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
++M SV+ ME + T+ I+ + G+ K++ V M G
Sbjct: 334 AGMYKKMCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQG 386
>gi|115450861|ref|NP_001049031.1| Os03g0159700 [Oryza sativa Japonica Group]
gi|22773243|gb|AAN06849.1| Hypothetical protein [Oryza sativa Japonica Group]
gi|108706296|gb|ABF94091.1| expressed protein [Oryza sativa Japonica Group]
gi|108706297|gb|ABF94092.1| expressed protein [Oryza sativa Japonica Group]
gi|113547502|dbj|BAF10945.1| Os03g0159700 [Oryza sativa Japonica Group]
gi|125584994|gb|EAZ25658.1| hypothetical protein OsJ_09489 [Oryza sativa Japonica Group]
gi|215693387|dbj|BAG88769.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 409
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/316 (25%), Positives = 137/316 (43%), Gaps = 11/316 (3%)
Query: 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF--AEAANKHLK 188
S P A VL W+ + E Y+ I+F N + A +F E L
Sbjct: 71 ASSPTKANLVLEWKLEKLIKEGIRDCEPYSVIIRFCRETKNAEFAMKVFEFVEELGIQLN 130
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T G +NAL+ A++ G +L+ ++ + P+ TY+ IS F RL M +
Sbjct: 131 T-GIFNALINAFLSVGDLLAAMTLYEAMEDIEDCKPNSATYDAFISAFSRLGSGHAMMSW 189
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ KD+ +P++ + YLI G++ E +++ M + P+ L +
Sbjct: 190 YLASKDAGFTPSIKAFEYLITGFVKLDRLDDAEVVFEEMICFEIKPNFAILEAKLELLSR 249
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-CSVTDRIKKIEALMRLIPEKEYRP 367
+ R++ ELV DG + L A + ++ C D+I +++ L+ L+
Sbjct: 250 RKDPNRVKVFLELVS---DGNQ-ELSEATVERLTRLCLYEDKIGELDQLLSLVQGMHTSS 305
Query: 368 W--LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
L+ +IR YA D L +ME +I ++ + ++ SYFR D+L F
Sbjct: 306 LTKLHCGIIRFYANADRLSDMEHAIFQMLDNGMVFAHSEDVEAVICSYFRHKDFDRLDLF 365
Query: 426 VKRAESAGWRLCRSLY 441
+ R S ++L RS Y
Sbjct: 366 LNRIRSL-YKLTRSTY 380
>gi|168020157|ref|XP_001762610.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686343|gb|EDQ72733.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 418
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 9/236 (3%)
Query: 116 RHSNGYAFVELMKQLGSRPRLA--LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVD 173
R N +F ++ L R+A LEV W ++Q GY + YTK I+ G+ +
Sbjct: 2 RECNPSSFWTVIDYLHGHRRMAEILEVFKWWQQQDGYKP--YELYYTKIIRMLGQAHMPT 59
Query: 174 LAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
A LF E L+ ++ TY LL Y G ++ + + RD+ + P+ TY L
Sbjct: 60 EARTLFIEMCELGLRPSVVTYTYLLQGYAERGEFEEAEQILRDMILSGDAKPNTTTYAGL 119
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I +G+ + D M F +K ++ + F+Y LI Y ++ ++++ + M +
Sbjct: 120 IYAYGKHGMYDRMWRTFNRMKTQHIPADEFSYRTLIKAYARGGLFSRMQQTMKEMSRNGM 179
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELV--KHHVDGKEFPLIRAMICAYSKCSV 346
D+ T ++ YA +G + MEK YE++ G+E I+A++ AY K S+
Sbjct: 180 YADSATMNAVVLAYAEAGLVKEMEKQYEVMWKNSFTAGQE--TIKAIVRAYVKDSL 233
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 137/294 (46%), Gaps = 5/294 (1%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F+ +++ P + Y +I + G+ + F E+ + L P+V TY YL+ GY
Sbjct: 28 VFKWWQQQDGYKPYELYYTKIIRMLGQAHMPTEARTLFIEMCELGLRPSVVTYTYLLQGY 87
Query: 272 MTAWMWGKVEEIYQ-MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK-HHVDGK 329
+ + E+I + M+ +G P+T TY L+ Y G RM + + +K H+
Sbjct: 88 AERGEFEEAEQILRDMILSGDAKPNTTTYAGLIYAYGKHGMYDRMWRTFNRMKTQHIPAD 147
Query: 330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKS 389
EF R +I AY++ + R+++ M +N +++ YA+ ++EMEK
Sbjct: 148 EFSY-RTLIKAYARGGLFSRMQQTMKEMSRNGMYADSATMNAVVL-AYAEAGLVKEMEKQ 205
Query: 390 INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYA 449
+++ + I + IV +Y + + +L+ +VKR + L+++ ++ +A
Sbjct: 206 YEVMWKNSFTAGQETI-KAIVRAYVKDSLFFQLSGYVKRVGLRKRTMVNYLWNALLLSHA 264
Query: 450 SQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ ++++ + M+ T IM AY+ Q ++Q++ M NG
Sbjct: 265 ANLAMDDLGVDFQNMKYLGFSPDVTTCNIMALAYSRAKQLEDLHQLIVTMQDNG 318
>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic [Vitis vinifera]
Length = 869
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/332 (26%), Positives = 153/332 (46%), Gaps = 27/332 (8%)
Query: 42 PNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVR---KDL---TQTVSALRDELLAN 95
PN + R L PA T F R+L+ AR+R K+L +V+ + + +
Sbjct: 27 PNPNLNRHLF-PAKATDFFGYQRILASA-----ARIRAKPKELVLGNPSVTVEKGKYSYD 80
Query: 96 VDDLDKVFRVLDEKGS---CL--FRRHSNGYAFVELMKQLGSRP--RLALEVLNWRRRQA 148
V+ L L +GS CL F+ + F + K+ R + +L + + +RQ
Sbjct: 81 VETLINKLSSLPPRGSIARCLDVFKNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQI 140
Query: 149 GYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSD 207
+ P + YT I GR ++ ++F E + + ++ ++ AL+ AY NG
Sbjct: 141 -WCKP-NEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAYGRNGQYK 198
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV-DHMEAAFQEIKDSNLSPNVFTYNY 266
L +KKE +SPSI+TYNT+I+ R L + + F +++ + ++ TYN
Sbjct: 199 SSLELLDRMKKE-RVSPSILTYNTVINSCARGGLDWEELLGLFAQMRHEGIQADIVTYNT 257
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
L++ + + E +++ M G ++PD TY L+ + G L R+EK+ EL+K
Sbjct: 258 LLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETF---GKLNRLEKVSELLKEME 314
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
G FP I + + + IK+ + R
Sbjct: 315 SGGSFPDITSYNVLLEAHAQSGSIKEAMGVFR 346
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/313 (21%), Positives = 134/313 (42%), Gaps = 6/313 (1%)
Query: 178 LFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
LFA+ ++ ++ I TYN LL A GL D+ + +FR + E I P I TY+ L+ F
Sbjct: 239 LFAQMRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMN-EGGILPDITTYSYLVETF 297
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
G+L ++ + +E++ P++ +YN L+ + + + +++ M+ +P+
Sbjct: 298 GKLNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNA 357
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
TY +LL Y G + ++ +K +I + + K++ L
Sbjct: 358 ATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGY---FKEVVTL 414
Query: 357 MRLIPEKEYRPWLNVLLIRVYA-KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR 415
+ E+ P + ++A + L E K I K V + + ++ +Y +
Sbjct: 415 FHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQ 474
Query: 416 CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKT 475
++ G + Y+S + M+A +E E++L +M + ++ T
Sbjct: 475 AALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDT 534
Query: 476 FWIMYYAYATCGQ 488
F + A+ GQ
Sbjct: 535 FNGVIEAFRQGGQ 547
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/288 (18%), Positives = 121/288 (42%), Gaps = 15/288 (5%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
LF+ ++++ P+ Y +I V GR L++ + F E+ ++P+VF++ LI Y
Sbjct: 132 LFKYMQRQIWCKPNEHIYTIMIGVLGREGLLEKCQEIFDEMPSHGVAPSVFSFTALINAY 191
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKE 330
+ E+ MK V P TY ++ A G + + ++ ++H
Sbjct: 192 GRNGQYKSSLELLDRMKKERVSPSILTYNTVINSCARGGLDWEELLGLFAQMRHEG---- 247
Query: 331 FPLIRAMICAY----SKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLE 384
I+A I Y S C+ + E + R + E P + L+ + K + LE
Sbjct: 248 ---IQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLE 304
Query: 385 EMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSK 444
++ + + + E S + ++ ++ + ++ + ++ + AG + Y
Sbjct: 305 KVSELLKE-MESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSIL 363
Query: 445 MVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
+ +Y R +++ + EM+ + + T+ I+ + G ++V
Sbjct: 364 LNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEV 411
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 82/393 (20%), Positives = 147/393 (37%), Gaps = 59/393 (15%)
Query: 62 LVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGY 121
+ R ++E PD L +T L ++ + ++ + ++ GS F ++
Sbjct: 274 VFRTMNEGGILPDITTYSYLVETFGKLN-----RLEKVSELLKEMESGGS--FPDITSYN 326
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
+E Q GS E + R+ G G Y+ + GR D DLF E
Sbjct: 327 VLLEAHAQSGS----IKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLE 382
Query: 182 AANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI------- 233
+ + TYN L+ + G + +LF D+ +E N+ P++ TY LI
Sbjct: 383 MKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEE-NVEPNMETYEGLIFACGKGG 441
Query: 234 ----------------------------SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
+G+ L + AF + + P V TYN
Sbjct: 442 LHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYN 501
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKH 324
LI + ++ + E I M V + +T+ ++ + G K Y E+ K
Sbjct: 502 SLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKA 561
Query: 325 HVDGKEFPLIRAMICAYSKCSVT----DRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKE 380
D E L A++ Y + ++ +I+AL L Y +++ VYAK
Sbjct: 562 RCDPDEQTL-EAVLSVYCFAGLVEESEEQFGEIKALGILPSVMCY-----CMMLAVYAKA 615
Query: 381 DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY 413
D ++ + +++ F ++ S I + I Y
Sbjct: 616 DRWDDAHQLLDEMFTNRVSNIHQVIGQMIRGDY 648
>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
Length = 863
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 98/192 (51%), Gaps = 9/192 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I GR +D ++F E ++ + +++ +Y AL+ AY NG + L D
Sbjct: 144 YTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELL-DRM 202
Query: 218 KEANISPSIVTYNTLISVFGRLLLV-DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
K ISPSI+TYNT+I+ R L + + F E++ + P++ TYN L++ +
Sbjct: 203 KNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGL 262
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336
+ E +++ M G ++PD TY L+ + G L R+EK+ +L+ G P I +
Sbjct: 263 GDEAEMVFRTMNDGGIVPDLTTYSHLVETF---GKLRRLEKVSDLLSEMASGGSLPDITS 319
Query: 337 ---MICAYSKCS 345
++ AY+K
Sbjct: 320 YNVLLEAYAKSG 331
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 87/403 (21%), Positives = 164/403 (40%), Gaps = 16/403 (3%)
Query: 92 LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPR--LALEVLNWRRRQAG 149
LL LDK V DE S R +++ L+ G R +LE+L+ +
Sbjct: 150 LLGREGLLDKCLEVFDEMPSQGVSRSV--FSYTALINAYGRNGRYETSLELLDRMKNDKI 207
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAA--DLFAEAANKHLK-TIGTYNALLGAYMYNGLS 206
+ +T Y I R +D LFAE ++ ++ I TYN LL A GL
Sbjct: 208 SPSILT---YNTVINACAR-GGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLG 263
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
D+ + +FR + + I P + TY+ L+ FG+L ++ + E+ P++ +YN
Sbjct: 264 DEAEMVFRTMN-DGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYNV 322
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
L+ Y + + ++ M+A P+ NTY +LL + SG + +++ +K
Sbjct: 323 LLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA-KEDCLEE 385
+ +I + + K++ L + E+ P + ++A + L E
Sbjct: 383 TDPDAATYNILIEVFGEGGY---FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHE 439
Query: 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445
+ I V + + ++ ++ + ++ G YHS +
Sbjct: 440 DARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLL 499
Query: 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+A V+E E++L + + I ++ TF AY G+
Sbjct: 500 YSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGK 542
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/284 (19%), Positives = 120/284 (42%), Gaps = 7/284 (2%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
LF+ ++++ P+ Y +IS+ GR L+D F E+ +S +VF+Y LI Y
Sbjct: 127 LFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAY 186
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKE 330
+ E+ MK + P TY ++ A G + + ++ ++H +G +
Sbjct: 187 GRNGRYETSLELLDRMKNDKISPSILTYNTVINACARGGLDWEGLLGLFAEMRH--EGIQ 244
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEK 388
P I S C++ + E + R + + P L L+ + K LE++
Sbjct: 245 -PDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSD 303
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
+++ S+ + ++ +Y + ++ + + ++AG + Y + ++
Sbjct: 304 LLSE-MASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLF 362
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
R +++ + EM++ D T+ I+ + G ++V
Sbjct: 363 GQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEV 406
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+NA + AY G ++ + D++K + P T ++SV+ LVD F+E
Sbjct: 529 TFNAQIEAYKQGGKFEEAVKTYVDMEK-SRCDPDERTLEAVLSVYSFARLVDECREQFEE 587
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
+K S++ P++ Y ++A Y W V E+ + M
Sbjct: 588 MKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEM 623
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 1/125 (0%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
AN + + Y ++ A+ L ++ F + E +PSI TY++L+ F R LV
Sbjct: 450 ANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMH-EVGSNPSIETYHSLLYSFARGGLV 508
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
EA + DS + N T+N I Y + + + Y M+ PD T +
Sbjct: 509 KESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAV 568
Query: 303 LRGYA 307
L Y+
Sbjct: 569 LSVYS 573
>gi|147820978|emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]
Length = 525
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 84/361 (23%), Positives = 149/361 (41%), Gaps = 12/361 (3%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
ALEV R Q Y + Y K + G+ A +LF + + T Y A
Sbjct: 127 ALEVFEMLREQPFYQP--KEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTA 184
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
LL +Y + L D+ S+ +K P + TY+TL+ + +E+ ++E+
Sbjct: 185 LLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEMDVR 244
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ-MMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+++PN T N +++GY A + ++E++ M+++ PD T +L + + G +
Sbjct: 245 SITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEI 304
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL-- 372
MEK YE ++ E +I AY K + D++ + MR K PW
Sbjct: 305 MEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMR----KLQFPWTTSTYN 360
Query: 373 -LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
+I ++ + ME + D + + C++ Y K+ + V+ A
Sbjct: 361 NVIEAFSDVGDAKNMEYTF-DQMRAEGMKADTKTFCCLIRGYANAGLFHKVVSSVQLAGK 419
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
S Y++ + A + EME V M++ T+ IM AY G K
Sbjct: 420 FEIPENTSFYNAVISACAKAEDLIEMERVFNRMKDKHCQPDSTTYSIMVEAYKKEGMNDK 479
Query: 492 V 492
+
Sbjct: 480 I 480
Score = 42.0 bits (97), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 41/225 (18%), Positives = 99/225 (44%), Gaps = 6/225 (2%)
Query: 277 WGKVEEIYQMMKAGPV-MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
W + E+++M++ P P TY+ LL SG R ++++ + L
Sbjct: 124 WLQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYT 183
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE 395
A++ +Y + ++ D I M+ +P + + L++ E +E S+ + +
Sbjct: 184 ALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELVE-SLYEEMD 242
Query: 396 HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA-ESAGWRLCRSLYHSKMVMYASQRRV 454
++ ++S Y + D++ + ES + ++ + ++ ++ ++
Sbjct: 243 VRSITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQI 302
Query: 455 EEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
E ME ++ N+ I+ +TF I+ AY G++R +++ +M
Sbjct: 303 EIMEKWYEKFRNFGIEPETRTFNILIGAY---GKKRMYDKMSSVM 344
>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
Length = 384
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 133/321 (41%), Gaps = 16/321 (4%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L+ + +G + + + D+K++ +S ++VTY LI + + FQE+
Sbjct: 56 YNCLVNGLVNSGRLEAAEKILDDMKRD-KVSANLVTYTNLIKEYANTGRLQDCRKLFQEM 114
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
KD SPN +TYN LI GY ++ + E+Y M D +TY + + Y G L
Sbjct: 115 KDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLL 174
Query: 313 PRMEKIYELVKHHVDGKEFP----LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP- 367
ME++ + +D K P ++ Y+K S K ++R + E YRP
Sbjct: 175 EDMERLLD----EMDTKGVPPDQVTYNTLLDVYAKKSY---FVKAHEILREMTEAGYRPN 227
Query: 368 -WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
W +++ KE + E + + + K V + ++S Y R + A
Sbjct: 228 IWTYNIMLSSARKEQSVAEATQLFEN-LKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLW 286
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
AG C Y + Y +E + ++M I K + + AY
Sbjct: 287 DEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKA 346
Query: 487 GQRRKVNQVLGLMCKNGYDVP 507
G+ R+ + M K G+ VP
Sbjct: 347 GRCREAELLYFEMTKEGF-VP 366
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ + GR AA L+ E + I Y+ L+ +Y ++G+ + + F+D++
Sbjct: 266 YSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMR 325
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
K + I P Y L+ +G+ E + E+ P+ TY L+ + A
Sbjct: 326 K-SGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVRAFANA 381
>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
Length = 384
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/321 (24%), Positives = 133/321 (41%), Gaps = 16/321 (4%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L+ + +G + + + D+K++ +S ++VTY LI + + FQE+
Sbjct: 56 YNCLVNGLVNSGRLEAAEKILDDMKQD-KVSANLVTYTNLIKEYANAGRLQDCRKLFQEM 114
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
KD SPN +TYN LI GY ++ + E+Y M D +TY + + Y G L
Sbjct: 115 KDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLL 174
Query: 313 PRMEKIYELVKHHVDGKEFP----LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP- 367
ME++ + +D K P ++ Y+K S K ++R + E YRP
Sbjct: 175 EDMERLLD----EMDTKGVPPDQVTYNTLLDVYAKKSY---FVKAHEILREMTEAGYRPN 227
Query: 368 -WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
W +++ KE + E + + + K V + ++S Y R + A
Sbjct: 228 IWTYNIMLSSARKEQSVAEATQLFEN-LKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLW 286
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
AG C Y + Y +E + ++M I K + + AY
Sbjct: 287 DEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDAYGKA 346
Query: 487 GQRRKVNQVLGLMCKNGYDVP 507
G+ R+ + M K G+ VP
Sbjct: 347 GRCREAELLYFEMTKEGF-VP 366
Score = 38.9 bits (89), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ + GR AA L+ E + I Y+ L+ +Y ++G+ + + F+D++
Sbjct: 266 YSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLIESYGHHGMYQEALACFQDMR 325
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
K + I P Y L+ +G+ E + E+ P+ TY L+ + A
Sbjct: 326 K-SGIVPDTKIYTALMDAYGKAGRCREAELLYFEMTKEGFVPDGITYGILVRAFANA 381
>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 642
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 80/367 (21%), Positives = 148/367 (40%), Gaps = 36/367 (9%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
+K GR V A +F +A + K T TYN+++ M G +K ++ ++ E +
Sbjct: 169 VKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD 228
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
P +TY+ LIS + +L D F E+KD+ + P Y L+ Y K
Sbjct: 229 CFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKAL 288
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-DGKEFPLIRAMICA 340
++++ MK P TY L++G +G R+E+ Y+L K+ + DG L ++
Sbjct: 289 DLFEEMKRAGCSPTVYTYTELIKGLGKAG---RVEEAYDLYKNMLTDG----LTPDVVFL 341
Query: 341 YSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSV 400
+ ++ ++ ++E L + E W + Y I FE K V
Sbjct: 342 NNLMNILGKVGRLEELTNVF--NEMGTWRCTPTVVSY---------NTVIKALFESKAPV 390
Query: 401 TTVR----------------IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSK 444
+ V ++ Y + N V+K ++ + G+ C + Y S
Sbjct: 391 SEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSL 450
Query: 445 MVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
+ +R E + KE++ + S + + +M + CG+ + + M G
Sbjct: 451 INALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGS 510
Query: 505 DVPVNAF 511
V A+
Sbjct: 511 GPDVYAY 517
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 126/287 (43%), Gaps = 15/287 (5%)
Query: 48 RDLCAPATHTVFPTLVRLLSETLTYPDA------RVRKDLTQTVSALRD--ELLANVDDL 99
R C+P +T + L++ L + +A + LT V L + +L V L
Sbjct: 296 RAGCSPTVYT-YTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRL 354
Query: 100 DKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEY 159
+++ V +E G+ +R ++ ++K L EV +W + G ++ Y
Sbjct: 355 EELTNVFNEMGT--WRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTY 412
Query: 160 TKGIKFAGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNGLSDKCQSLFRDLKK 218
+ I + N V+ A L E K Y +L+ A + LF++LK+
Sbjct: 413 SILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKE 472
Query: 219 E-ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
N+S + Y +I FG+ + F E+K+ P+V+ YN L++G + A M
Sbjct: 473 NFGNVSSRV--YAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMV 530
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
+ + + M+ D N++ ++L G+A +G R +++E +KH
Sbjct: 531 NEANSLLRKMEENGCTADINSHNIILNGFARTGVPRRAIEMFETMKH 577
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 3/183 (1%)
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
A+ L+ LG R ++ + +G ++ Y IK G+ + A DLF E
Sbjct: 446 AYCSLINALGKAKRYEAANELFKELKENFGN-VSSRVYAVMIKHFGKCGKLSEAVDLFNE 504
Query: 182 AANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
N+ + YNAL+ + G+ ++ SL R ++ E + I ++N +++ F R
Sbjct: 505 MKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKME-ENGCTADINSHNIILNGFARTG 563
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
+ F+ +K + P+ TYN L+ + A M+ + + + MK D TY
Sbjct: 564 VPRRAIEMFETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAARLMREMKDKGFEYDAITYS 623
Query: 301 LLL 303
+L
Sbjct: 624 SIL 626
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 134/338 (39%), Gaps = 57/338 (16%)
Query: 51 CAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRD-----ELLANVDDL---DKV 102
C P + T ++ L+ E V ++ D L+++ + L D
Sbjct: 193 CKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSA 252
Query: 103 FRVLDE-KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTK 161
R+ DE K +C+ + + ++G + AL++ +R G T YT+
Sbjct: 253 IRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEK-ALDLFEEMKRA---GCSPTVYTYTE 308
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
IK G+ V+ A DL+ N L+D
Sbjct: 309 LIKGLGKAGRVEEAYDLYK----------------------NMLTD-------------G 333
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI-AGYMTAWMWGKV 280
++P +V N L+++ G++ ++ + F E+ +P V +YN +I A + + +V
Sbjct: 334 LTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEV 393
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340
+ MKA V P TY +L+ GY + R+EK L+ +D K FP A C
Sbjct: 394 SSWFDKMKADGVSPSEFTYSILIDGYCKTN---RVEKAL-LLLEEMDEKGFPPCPAAYC- 448
Query: 341 YSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA 378
S + + K+ EA L KE + + RVYA
Sbjct: 449 -SLINALGKAKRYEAANELF--KELKENFGNVSSRVYA 483
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT--YNALLGAYMYNGLSDK 208
G P Y I G+ + A +LF E ++ + + Y ++ + G +
Sbjct: 439 GFPPCPAAYCSLINALGKAKRYEAANELFKEL-KENFGNVSSRVYAVMIKHFGKCGKLSE 497
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
LF ++K + + P + YN L+S + +V+ + ++++++ + ++ ++N ++
Sbjct: 498 AVDLFNEMKNQGS-GPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADINSHNIIL 556
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
G+ + + E+++ MK + PD TY LL +AH+G
Sbjct: 557 NGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFAHAG 598
>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
Length = 1035
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 84/202 (41%), Gaps = 36/202 (17%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y+ ++ + G DK +LF ++ I P +VTY T+I + L D EA FQ+
Sbjct: 205 SYSTVINGFFTEGQVDKPYNLFLEMMDRG-IPPDVVTYTTVIDGLCKAQLFDRAEAVFQQ 263
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG--------------------- 290
+ D+ + PN+ TYN LI GY++ W +V + + M AG
Sbjct: 264 MIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGR 323
Query: 291 --------------PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336
+ P TY ++L GYA G L M + L+ + +
Sbjct: 324 CREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNI 383
Query: 337 MICAYSKCSVTDRIKKIEALMR 358
AY+KC + D+ I MR
Sbjct: 384 FFSAYAKCGIIDKAMDIFNKMR 405
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 113/280 (40%), Gaps = 16/280 (5%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P++V+Y+T+I+ F VD F E+ D + P+V TY +I G A ++ + E +
Sbjct: 201 PNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAV 260
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+Q M V P+ +TY L+ GY G + +++ +++ G P C Y
Sbjct: 261 FQQMIDNGVKPNIDTYNCLIHGYLSIG---KWKEVVRMLEEMSAGGPKP----NCCTYGS 313
Query: 344 -----CSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEH 396
C R ++ + K +P + +++ YA + L EM +N +
Sbjct: 314 LLNYLCK-NGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVAN 372
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
S I S+Y +C +DK + + G Y + + RV++
Sbjct: 373 GISPNH-HIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDD 431
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
E +M N + F + Y T + KV ++
Sbjct: 432 AEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELF 471
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N AY G+ DK +F ++++ +SP V+Y LI +L VD E F ++
Sbjct: 381 FNIFFSAYAKCGIIDKAMDIFNKMRQQG-LSPDAVSYGALIDALCKLGRVDDAEVKFNQM 439
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI-YQMMKAG 290
+ ++P++ ++ L+ G T W KVEE+ ++M+ G
Sbjct: 440 INEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVG 478
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/309 (22%), Positives = 120/309 (38%), Gaps = 18/309 (5%)
Query: 206 SDKCQSLFRDLKKEA--NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
S+ SLF + ++ ++P+ TY+ LI F R+ ++H AAF I + +
Sbjct: 72 SETVVSLFNRMVRDCYIKVAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIV 131
Query: 264 YNYLIAGYMTAWMWGKVEEI-YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
N L+ G G+ ++ Q M MPDT +Y +LL+G N R E+ EL+
Sbjct: 132 INQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLC---NEKRAEEALELL 188
Query: 323 KHHVDGKEF---PLIRAMICAYSKCSVTDRIKK-----IEALMRLIPEKEYRPWLNVLLI 374
D + + P + + + ++ K +E + R IP + + V I
Sbjct: 189 HMMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIP-PDVVTYTTV--I 245
Query: 375 RVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW 434
K + E ++ + C++ Y ++ ++ + G
Sbjct: 246 DGLCKAQLFDRAEAVFQQMIDNGVK-PNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGP 304
Query: 435 RLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQ 494
+ Y S + R E M I S T+ IM + YAT G +++
Sbjct: 305 KPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHD 364
Query: 495 VLGLMCKNG 503
+L LM NG
Sbjct: 365 LLNLMVANG 373
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 59/129 (45%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN L+ + G D+ L + + P +YNTL+ + + +D + F++
Sbjct: 520 SYNTLIDGHCLAGTIDEASKLLEGMVS-VGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRK 578
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + ++P V TYN ++ G + + +E+Y M D TY ++L G S
Sbjct: 579 MLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNC 638
Query: 312 LPRMEKIYE 320
+ K+++
Sbjct: 639 VDEAIKMFQ 647
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 2/149 (1%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
+D A LF E K L + TYN +L G + + L+ + + +I TYN
Sbjct: 807 IDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMIN-SRTQMNIYTYN 865
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
+++ + VD FQ + L N+ T+N +I + +++ + A
Sbjct: 866 IILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPAN 925
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
++PD TY L+ G+L + ++
Sbjct: 926 GLVPDVVTYRLVAENLIEEGSLEEFDGLF 954
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 19/184 (10%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
A+++ N R+Q G Y I ++ VD A F + N+ + I +++
Sbjct: 397 AMDIFNKMRQQ---GLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSS 453
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLL----LVDHMEAA 248
L+ +K + LF ++ I P+IV +NT++ GR++ LVD +E
Sbjct: 454 LVYGLCTVDKWEKVEELFFEMLN-VGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECM 512
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ P+V +YN LI G+ A + ++ + M + + PD+ +Y LL GY
Sbjct: 513 -------GVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCK 565
Query: 309 SGNL 312
+G +
Sbjct: 566 AGRI 569
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 42/99 (42%)
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
+ P +++YNTLI +D + + L P+ F+YN L+ GY A
Sbjct: 513 GVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSA 572
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
++ M + + P TY +L G + +++Y
Sbjct: 573 YSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELY 611
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 52/262 (19%), Positives = 99/262 (37%), Gaps = 55/262 (20%)
Query: 112 CLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN 171
C R G V+ ++ +G RP +V+++ G+ T +E +K ++ G ++
Sbjct: 494 CKEGRVMEGQRLVDSIECMGVRP----DVISYNTLIDGHCLAGTIDEASKLLE--GMVS- 546
Query: 172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
V L D F +YN LL Y G D S FR + I+P +VTYNT
Sbjct: 547 VGLKPDSF------------SYNTLLHGYCKAGRIDSAYSHFRKMLSNG-ITPGVVTYNT 593
Query: 232 L----------------------------ISVFGRLL-------LVDHMEAAFQEIKDSN 256
+ I + +L VD FQ +
Sbjct: 594 ILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKG 653
Query: 257 LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
L N+ T+N +I + +++ + A ++ + TY L++ G+L +
Sbjct: 654 LQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFD 713
Query: 317 KIYELVKHHVDGKEFPLIRAMI 338
++ ++ + ++ A++
Sbjct: 714 SLFSAMEKNGTAPNSQMLNALV 735
>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
Length = 821
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 139/325 (42%), Gaps = 15/325 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T + ++ A GL D+ + F LK + +P VTYN L+ VFG+ + + +E
Sbjct: 282 TCSTVISACGREGLLDEAKEFFVGLKSQG-YAPGTVTYNALLQVFGKAGIYSEALSIMKE 340
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++D+N P+ TYN L+A Y+ A + + + M + P+ TY ++ Y +
Sbjct: 341 MEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQ 400
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ + +Y+ +K A++ K S ++ + KI M++ R N
Sbjct: 401 VDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPNRITWNT 460
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVT---TVRIMRCIVSSYFRCNAVDKLANFVKR 428
+L K M K + F+ S ++++ RC +
Sbjct: 461 MLSMCGNK-----GMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDE 515
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
AG+ + Y++ + A + ESV+K+M+N S+ ++ ++ +YA G
Sbjct: 516 MLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGGY 575
Query: 489 RRKVNQVLGLMCKNGYDVPVNAFPS 513
+ +N++ K+ YD + FPS
Sbjct: 576 VKGINRIE----KDIYDGHI--FPS 594
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 131/311 (42%), Gaps = 8/311 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I GR VD A L+ + + TYNA+LG S++ + D+K
Sbjct: 388 YTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMK 447
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ +P+ +T+NT++S+ G + +++ FQE+K P+ T+N LI
Sbjct: 448 VDG-CAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSD 506
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
E+IY M P TY LL A G+ E + + +K+ +
Sbjct: 507 IDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLI 566
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC--LEEMEKSINDAFE 395
+ +Y+K I +IE + I + P +L + A C L ME++ +
Sbjct: 567 LNSYAKGGYVKGINRIE---KDIYDGHIFPSWMLLRTLILANFKCRALAGMERAFQALQK 623
Query: 396 HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVE 455
H V + ++S + R N D+ + + G + Y+S M +YA
Sbjct: 624 HGYKPDLV-VFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYARGGECW 682
Query: 456 EMESVLKEMEN 466
+ E +L+E++N
Sbjct: 683 KAEEILRELQN 693
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/332 (21%), Positives = 136/332 (40%), Gaps = 48/332 (14%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N +L G+ + +F+++K P T+NTLI+ GR E + E
Sbjct: 457 TWNTMLSMCGNKGMHKYVKRVFQEMKS-CGFEPDRDTFNTLITASGRCGSDIDAEKIYDE 515
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG- 310
+ ++ +P+V TYN L+ W E + + MK P +Y L+L YA G
Sbjct: 516 MLEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGGY 575
Query: 311 ----------------------------------NLPRMEKIYELVKHHVDGKEFPLIRA 336
L ME+ ++ ++ H + + +
Sbjct: 576 VKGINRIEKDIYDGHIFPSWMLLRTLILANFKCRALAGMERAFQALQKHGYKPDLVVFNS 635
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKE-DC--LEEMEKSIN 391
M+ +S+ ++ DR +I M LI E +P L L+ +YA+ +C EE+ + +
Sbjct: 636 MLSMFSRKNMHDRAHEI---MHLIQECGLQPDLVTYNSLMDLYARGGECWKAEEILRELQ 692
Query: 392 DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451
++ + ++ +++ A+ L+ + R G R C Y++ + YA++
Sbjct: 693 NSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISR----GIRPCIVTYNTFVGGYAAK 748
Query: 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
E++ VL M + ++ T+ I+ Y
Sbjct: 749 GMFAEIDEVLSYMTKHDCRPNELTYKIVVDGY 780
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ Y G K + + R+L+ + S +++YNT+I F R L+ E
Sbjct: 667 TYNSLMDLYARGGECWKAEEILRELQNSGDKS-DLISYNTVIKGFCRQGLMHEALRTLSE 725
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + P + TYN + GY M+ +++E+ M P+ TY +++ GY +
Sbjct: 726 MISRGIRPCIVTYNTFVGGYAAKGMFAEIDEVLSYMTKHDCRPNELTYKIVVDGYCKA 783
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 7/154 (4%)
Query: 180 AEAANKHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
AE+ K +K G +Y+ +L +Y G + +D+ + +I PS + TLI
Sbjct: 544 AESVIKDMKNKGFKPSETSYSLILNSYAKGGYVKGINRIEKDIY-DGHIFPSWMLLRTLI 602
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ + ME AFQ ++ P++ +N +++ + M + EI +++ +
Sbjct: 603 LANFKCRALAGMERAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQ 662
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
PD TY L+ YA G + E+I +++ D
Sbjct: 663 PDLVTYNSLMDLYARGGECWKAEEILRELQNSGD 696
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 55/292 (18%), Positives = 113/292 (38%), Gaps = 7/292 (2%)
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY-MTAWMWGKVE 281
S + Y T++ + R + A F+++ +S LSP + TYN ++ Y W K+
Sbjct: 206 SLDVRAYTTILHSYSRCGKYERAVAIFEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKIL 265
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAY 341
+ M++ + D T ++ G L ++ + +K A++ +
Sbjct: 266 GLLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVF 325
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTS 399
K + I M+ + + P L+ Y + EE I+ E+
Sbjct: 326 GKAGIYSEALSI---MKEMEDNNCPPDAVTYNELVAAYVRAGFYEEGAALIDTMTENGIK 382
Query: 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES 459
V ++++Y R VDK + + + +G Y++ + M + + EEM
Sbjct: 383 PNAV-TYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLGKKSQSEEMMK 441
Query: 460 VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
+L +M+ ++ T+ M G + V +V M G++ + F
Sbjct: 442 ILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTF 493
>gi|225432159|ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic [Vitis vinifera]
Length = 498
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 86/362 (23%), Positives = 150/362 (41%), Gaps = 14/362 (3%)
Query: 137 ALEVLNWRRRQAGYGTPMTKE-EYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYN 194
ALEV R Q Y KE Y K + G+ A +LF + + T Y
Sbjct: 127 ALEVFEMLREQPFY---QPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYT 183
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
ALL +Y + L D+ S+ +K P + TY+TL+ + +E+ ++E+
Sbjct: 184 ALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEMDV 243
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ-MMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
+++PN T N +++GY A + ++E++ M+++ PD T +L + + G +
Sbjct: 244 RSITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIE 303
Query: 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL- 372
MEK YE ++ E +I AY K + D++ + MR K PW
Sbjct: 304 IMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMR----KLQFPWTTSTY 359
Query: 373 --LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
+I ++ + ME + D + + C++ Y K+ + V+ A
Sbjct: 360 NNVIEAFSDVGDAKNMEYTF-DQMRAEGMKADTKTFCCLIRGYANAGLFHKVVSSVQLAG 418
Query: 431 SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRR 490
S Y++ + A + EME V M++ T+ IM AY G
Sbjct: 419 KFEIPENTSFYNAVISACAKAEDLIEMERVFNRMKDKHCQPDSTTYSIMVEAYKKEGMND 478
Query: 491 KV 492
K+
Sbjct: 479 KI 480
Score = 42.0 bits (97), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 41/225 (18%), Positives = 99/225 (44%), Gaps = 6/225 (2%)
Query: 277 WGKVEEIYQMMKAGPV-MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
W + E+++M++ P P TY+ LL SG R ++++ + L
Sbjct: 124 WLQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYT 183
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE 395
A++ +Y + ++ D I M+ +P + + L++ E +E S+ + +
Sbjct: 184 ALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELVE-SLYEEMD 242
Query: 396 HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA-ESAGWRLCRSLYHSKMVMYASQRRV 454
++ ++S Y + D++ + ES + ++ + ++ ++ ++
Sbjct: 243 VRSITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQI 302
Query: 455 EEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
E ME ++ N+ I+ +TF I+ AY G++R +++ +M
Sbjct: 303 EIMEKWYEKFRNFGIEPETRTFNILIGAY---GKKRMYDKMSSVM 344
>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
Length = 799
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 116/278 (41%), Gaps = 44/278 (15%)
Query: 122 AFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF 179
A +L+K L G R A++VL R + G P T YT +K + A +L
Sbjct: 127 AINQLLKGLCHGKRVGEAMDVLLQRMPELGC-MPDTVS-YTILLKGLCNEKRAEEALELL 184
Query: 180 AEAANKHLK----TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
A+ H + + +Y+ ++ + G DK +LF ++ I P +VTY T+I
Sbjct: 185 HMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRG-IPPDVVTYTTVIDG 243
Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
+ L D E FQ++ D+ PN +TYN LI GY++ W +V ++ + M A + PD
Sbjct: 244 LCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPD 303
Query: 296 -----------------------------------TNTYLLLLRGYAHSGNLPRMEKIYE 320
+TY +L+ GYA G L M +
Sbjct: 304 CYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLD 363
Query: 321 LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
L+ + + + AY+KC + D+ I MR
Sbjct: 364 LMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMR 401
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N AY G+ DK +F +++ +SP++V Y LI +L VD E F ++
Sbjct: 377 FNIFFSAYAKCGMIDKAMDIFNKMRQHG-LSPNVVNYGALIDALCKLGRVDDAEVKFNQM 435
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ ++PN+ +N L+ G T W + EE +Y+M+ G + P+ + L+ + G
Sbjct: 436 INEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQG-ICPNAVFFNTLICNLCNVGR 494
Query: 312 LPRMEKIYELVKH 324
+ ++ +L++H
Sbjct: 495 VMEGRRLIDLMEH 507
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 114/285 (40%), Gaps = 12/285 (4%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P++V+Y+ +I+ F VD F E+ D + P+V TY +I G A ++ + E +
Sbjct: 197 PNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGV 256
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV---DGKEFPLIRAMICA 340
+Q M P+ TY L+ GY G + ++ E + D + + +C
Sbjct: 257 FQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCK 316
Query: 341 YSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKT 398
+C ++ + K +P ++ +LI YA + L EM ++ E+
Sbjct: 317 NGRC------REARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGL 370
Query: 399 SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEME 458
S I S+Y +C +DK + + G Y + + RV++ E
Sbjct: 371 SPDH-HIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAE 429
Query: 459 SVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+M N + + F + Y T + + +++ M G
Sbjct: 430 VKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQG 474
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y L+ Y G +D+ + +F D +SP+ VTYNTL+ + +D F+E
Sbjct: 516 SYTPLISGYCLTGRTDEAEKVF-DGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFRE 574
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ ++P V TYN ++ G + + +E+Y M D TY ++L G S
Sbjct: 575 MLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNC 634
Query: 312 LPRMEKIYE 320
+ K+++
Sbjct: 635 VDEAFKMFQ 643
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 68/327 (20%), Positives = 117/327 (35%), Gaps = 13/327 (3%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ TY L+ Y G + S F DL E +SP +N S + + ++D F
Sbjct: 339 VSTYGILIHGYATKGALSEMHS-FLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIF 397
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+++ LSPNV Y LI E + M V P+ + L+ G
Sbjct: 398 NKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLC-- 455
Query: 310 GNLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
+ + E+ ELV +D P +IC + C+V R+ + L+ L+ R
Sbjct: 456 -TVDKWERAEELVYEMLDQGICPNAVFFNTLIC--NLCNV-GRVMEGRRLIDLMEHVGVR 511
Query: 367 P--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
P + LI Y +E EK + S T V ++ Y + +D
Sbjct: 512 PDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEV-TYNTLLHGYCSASRIDDAYC 570
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
+ G Y++ + +R E + + M N C T+ I+
Sbjct: 571 LFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLC 630
Query: 485 TCGQRRKVNQVLGLMCKNGYDVPVNAF 511
+ ++ +C G + + F
Sbjct: 631 KSNCVDEAFKMFQSLCSKGLQLNIITF 657
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 120/297 (40%), Gaps = 28/297 (9%)
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
++P++ TY+ LI F R+ ++H AAF I + + N L+ G G+
Sbjct: 86 VAPNLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAM 145
Query: 282 EI-YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD--GKEFPLIRAMI 338
++ Q M MPDT +Y +LL+G N R E+ EL+ D G+ P +
Sbjct: 146 DVLLQRMPELGCMPDTVSYTILLKGLC---NEKRAEEALELLHMMADDHGRRCP---PNV 199
Query: 339 CAYS----KCSVTDRIKK-----IEALMRLIPEK--EYRPWLNVLL-IRVYAKEDCLEEM 386
+YS ++ K +E + R IP Y ++ L +++ + + +
Sbjct: 200 VSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGV--F 257
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446
++ I++ F+ C++ Y ++ ++ + G + Y S +
Sbjct: 258 QQMIDNGFKPNNYTYN-----CLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLN 312
Query: 447 MYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
R E M I T+ I+ + YAT G +++ L LM +NG
Sbjct: 313 YLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENG 369
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 54/277 (19%), Positives = 109/277 (39%), Gaps = 11/277 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY +LL NG + + F + ++ I P + TY LI + + M +
Sbjct: 306 TYGSLLNYLCKNGRCREARFFFDSMIRKG-IKPKVSTYGILIHGYATKGALSEMHSFLDL 364
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ ++ LSP+ +N + Y M K +I+ M+ + P+ Y L+ G
Sbjct: 365 MVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGR 424
Query: 312 LPRME-KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--- 367
+ E K +++ V + +++ Y C+V D+ ++ E L+ + ++ P
Sbjct: 425 VDDAEVKFNQMINEGVT-PNIVVFNSLV--YGLCTV-DKWERAEELVYEMLDQGICPNAV 480
Query: 368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
+ N L+ + +E + + D EH ++S Y D+
Sbjct: 481 FFNTLICNLCNVGRVME--GRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFD 538
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
S G Y++ + Y S R+++ + +EM
Sbjct: 539 GMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREM 575
>gi|357120957|ref|XP_003562190.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Brachypodium distachyon]
Length = 454
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 84/360 (23%), Positives = 159/360 (44%), Gaps = 19/360 (5%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF--AEAANKHLKTIGTYN 194
ALE+ R+Q Y P T+ Y + + G+ AA LF + + T+ Y
Sbjct: 76 ALEIFELMRKQRWY-EPRTRT-YARLLMMLGKCRQPGPAAALFRVMLSEERLAPTVDVYT 133
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
AL+GAY Y+G+ D+ + +K A+ P T++ LI+ + D + E+
Sbjct: 134 ALVGAYGYSGMLDEALATVELMKGAADCKPDEYTFSILINCCCKSRRFDLIPPVLDEMSY 193
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKV-EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
+ NV +N +I GY A M ++ + M++ G +PD T ++ Y + G +
Sbjct: 194 LGIGCNVVIHNAIIDGYGKAGMLAEMGTALCNMLEDGDNVPDIYTMNSIIWAYGNRGRVD 253
Query: 314 RMEKIY---ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
MEK Y +L+ D + F + MI +Y K ++ + K+ +++ + + + P
Sbjct: 254 DMEKWYSEFQLMGVEPDSRTFNI---MIKSYGKANMHE---KMMMVLKYMKRRFFSPTAA 307
Query: 371 V--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC-IVSSYFRCNAVDKLANFVK 427
++I + + +E+ME + I C +V+ Y + +DK+ ++
Sbjct: 308 TFNIIIECFGRAGDIEKMEYYFR--LMKIQGIKPNPITYCSLVNGYSKAGILDKVPAIIR 365
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+ E+ L ++ + YA ++ ME +L+ M+ K K + M AY G
Sbjct: 366 QTENTDVVLDTPFFNCVINAYAKSGDIKIMEEMLQLMKEKKCKPGKVIYTTMIQAYIAHG 425
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 121/254 (47%), Gaps = 14/254 (5%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+NA++ Y G+ + + ++ ++ + P I T N++I +G VD ME + E
Sbjct: 203 HNAIIDGYGKAGMLAEMGTALCNMLEDGDNVPDIYTMNSIIWAYGNRGRVDDMEKWYSEF 262
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ + P+ T+N +I Y A M K+ + + MK P T+ +++ + +G++
Sbjct: 263 QLMGVEPDSRTFNIMIKSYGKANMHEKMMMVLKYMKRRFFSPTAATFNIIIECFGRAGDI 322
Query: 313 PRMEKIYELVKHHVDG-KEFPLIR-AMICAYSKCSVTDRIKKIEALMRLIPEKEY---RP 367
+ME + L+K + G K P+ +++ YSK + D K+ A++R + P
Sbjct: 323 EKMEYYFRLMK--IQGIKPNPITYCSLVNGYSKAGILD---KVPAIIRQTENTDVVLDTP 377
Query: 368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
+ N +I YAK ++ ME+ + E K V I ++ +Y + +D+ A ++
Sbjct: 378 FFNC-VINAYAKSGDIKIMEEMLQLMKEKKCKPGKV-IYTTMIQAYI-AHGMDEAAKLLE 434
Query: 428 -RAESAGWRLCRSL 440
+S G RL L
Sbjct: 435 IEVDSFGNRLLGPL 448
>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
Length = 924
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 142/322 (44%), Gaps = 12/322 (3%)
Query: 172 VDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
VD A D+F + K +K TYN ++ D + +F+ + + + PS VTYN
Sbjct: 241 VDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKG-VKPSNVTYN 299
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
T+I + VD E FQ++ D + P+ TYN +I G A K E ++Q M
Sbjct: 300 TIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDK 359
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHV---DGKEFPLIRAMICAYSKCSV 346
V PD TY +++ G + ++ R E ++ +++ V +G LI + V
Sbjct: 360 GVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEV 419
Query: 347 TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIM 406
RIK++ A + E + LL+ K E +S+ D+ K +V I
Sbjct: 420 VQRIKEMSA-----HDLEPDVFTYGLLLDYLCKNGKCNE-ARSLFDSMIRKGIKPSVTIY 473
Query: 407 RCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466
++ Y + A+ ++ + + + G ++++ + YA + ++E+ + +M+
Sbjct: 474 GIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQ 533
Query: 467 YKIDCSKKTFWIMYYAYATCGQ 488
+ + T+ + A G+
Sbjct: 534 QGLSPNVVTYGTLIDALCKLGR 555
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/314 (21%), Positives = 119/314 (37%), Gaps = 10/314 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN ++ + G DK SLF E +SP +VTYNT+I + VD E FQ+
Sbjct: 195 SYNIVINGFFNEGQVDKAYSLFL----EMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQ 250
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + + PN TYN +I G A E ++Q M V P TY ++ G +
Sbjct: 251 MVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQA 310
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WL 369
+ R E +++ + + +I K D K E + + + +K +P
Sbjct: 311 VDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAID---KAEGVFQQMIDKGVKPDNLT 367
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
++I K ++ E + C++ Y +++ +K
Sbjct: 368 YTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNN-GTYNCLIHGYLSTGQWEEVVQRIKEM 426
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
+ Y + + E S+ M I S + IM + Y G
Sbjct: 427 SAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGAL 486
Query: 490 RKVNQVLGLMCKNG 503
+++ +L LM NG
Sbjct: 487 SEMHDLLNLMVANG 500
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N ++ AY + D+ +F +K++ +SP++VTY TLI +L VD F ++
Sbjct: 508 FNTVICAYAKRAMIDEVMHIFIKMKQQG-LSPNVVTYGTLIDALCKLGRVDDAVLQFNQM 566
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
+ ++PN +N L+ G T W KVEE++ M + PD
Sbjct: 567 INEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPD 609
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/278 (20%), Positives = 109/278 (39%), Gaps = 42/278 (15%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++++ SP +V+YN +I+ F VD + F E+ +SP+V TYN +I G A
Sbjct: 185 QDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEV 241
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHVDGKEFPLIRA 336
+ E+++Q M V P+ TY ++ G + + E +++ +V V
Sbjct: 242 DRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTY-NT 300
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396
+I K DR E + + + ++ +P +H
Sbjct: 301 IIDGLCKAQAVDR---AEGVFQQMIDRGVKP---------------------------DH 330
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
T T I+ + A+DK ++ G + Y + + V+
Sbjct: 331 VTYNT-------IIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDR 383
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQ 494
E V ++M + + + T+ + + Y + GQ +V Q
Sbjct: 384 AEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQ 421
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN L+ + + D+ L D A + P+IV+YNTL+ + + +D+ F+E
Sbjct: 647 SYNTLIDGHCFASRMDEAVKLL-DGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFRE 705
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ ++P V TYN ++ G + + + E+Y M + TY ++L G+ +
Sbjct: 706 MLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNC 765
Query: 312 LPRMEKIYE 320
KI++
Sbjct: 766 FDEAFKIFQ 774
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 5/174 (2%)
Query: 166 AGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
AGRI+N A LF E K + + TYN +L +G + + L+ ++ K +
Sbjct: 693 AGRIDN---AYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLW- 748
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
SI TY+ ++ F + D FQ + +L ++ T+N +I G +++
Sbjct: 749 SICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLF 808
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338
+ A ++P TY L+ G+L ++ ++ +++ ++ A+I
Sbjct: 809 AAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALI 862
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 21/220 (9%)
Query: 149 GYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDK 208
GY + EE + IK ++ DL D+F TY LL NG ++
Sbjct: 409 GYLSTGQWEEVVQRIK---EMSAHDLEPDVF------------TYGLLLDYLCKNGKCNE 453
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
+SLF + ++ I PS+ Y ++ +G+ + M + + +SPN +N +I
Sbjct: 454 ARSLFDSMIRKG-IKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVI 512
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHVD 327
Y M +V I+ MK + P+ TY L+ G + + + +++ V
Sbjct: 513 CAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVT 572
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
+ +++ Y C+V D+ +K+E L + + RP
Sbjct: 573 PNNV-VFNSLV--YGLCTV-DKWEKVEELFLEMLNQGIRP 608
>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
Length = 823
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 130/322 (40%), Gaps = 50/322 (15%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYNALL Y G+ + L +++ A ISP+IVTYN LI+ + R L D A +
Sbjct: 321 TYNALLDVYGKGGMHKEASELLVEMEA-AGISPNIVTYNELIAAYARAGLCDEAAALKKS 379
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ L P+ FTY LI+ + A + K E + M+ P+ TY +L+ Y
Sbjct: 380 LLSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEK 439
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
L M K+++ ++ + +++ ++ C + + ++ + R + Y P ++
Sbjct: 440 LDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGM---LTEVSNVFREMKRAGYMPGVDT 496
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
I ++ Y RC VD + K
Sbjct: 497 FNI----------------------------------LIECYGRCGYVDYSVDIYKGLLR 522
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ--- 488
G + + + M A + R ++ E V +EM + S + ++YA GQ
Sbjct: 523 TGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQ 582
Query: 489 -RRKVNQ--------VLGLMCK 501
R+ +++ + G++CK
Sbjct: 583 LRKYIDELEKSAKQPLSGILCK 604
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 141/314 (44%), Gaps = 6/314 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ A+ +K F +++K N +P+IVTYN LI ++GR+ +D M F+
Sbjct: 391 TYCTLISAFNRAERYEKALETFTEMRK-TNCTPNIVTYNILIDIYGRMEKLDDMMKVFKF 449
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ N +P++ T+N L+ + M +V +++ MK MP +T+ +L+ Y G
Sbjct: 450 MQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGY 509
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK--EYRPWL 369
+ IY+ + P A++ + ++ R ++ E + + + E +
Sbjct: 510 VDYSVDIYKGLLRTGLQPTVPTFAALMASLAR---EGRWQQCEKVSQEMAEAGLQLSDAC 566
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
+ LI YA ++ K I++ + + + + V +Y +C ++ + +
Sbjct: 567 HAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQLALNQL 626
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
G ++++ + M A + +E +L+E+ ++ T+ + Y G
Sbjct: 627 YDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMY 686
Query: 490 RKVNQVLGLMCKNG 503
K +V+ M + G
Sbjct: 687 YKAEEVMSEMRRAG 700
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 12/195 (6%)
Query: 184 NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
N H I +NA++ G ++ L +++K A + P VTYN L+S++GR +
Sbjct: 629 NGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRK-AQLKPDGVTYNCLMSMYGREGMYY 687
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
E E++ + +PN+ TYN L+ Y ++ M A V PD T+ L+
Sbjct: 688 KAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLV 747
Query: 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK--------KIEA 355
Y+ G + E + H +A++ Y++ + R K IE
Sbjct: 748 GSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDGYNRNASPSRKKPGGDGGGRPIEM 807
Query: 356 LMRLIPEK---EYRP 367
+ L P K E+ P
Sbjct: 808 IKELDPAKNIHEFHP 822
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/319 (20%), Positives = 121/319 (37%), Gaps = 52/319 (16%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDH--------------------------- 244
LF LK++ + S + Y +LIS+ R D
Sbjct: 199 LFESLKQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLY 258
Query: 245 ---------MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
+++ FQE+KD +SP+ +TYN +I + + ++Q MK P+
Sbjct: 259 GKRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPN 318
Query: 296 TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI--RAMICAYSKCSVTDR---I 350
TY LL Y G ++ LV+ G ++ +I AY++ + D +
Sbjct: 319 RVTYNALLDVYGKGGMHKEASEL--LVEMEAAGISPNIVTYNELIAAYARAGLCDEAAAL 376
Query: 351 KKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIM--RC 408
KK L P++ + LI + + E EK++ E + + T I+
Sbjct: 377 KKSLLSKGLCPDE----FTYCTLISAFNRA---ERYEKALETFTEMRKTNCTPNIVTYNI 429
Query: 409 IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK 468
++ Y R +D + K + ++S + + + + E+ +V +EM+
Sbjct: 430 LIDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAG 489
Query: 469 IDCSKKTFWIMYYAYATCG 487
TF I+ Y CG
Sbjct: 490 YMPGVDTFNILIECYGRCG 508
>gi|125542489|gb|EAY88628.1| hypothetical protein OsI_10104 [Oryza sativa Indica Group]
Length = 409
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 136/316 (43%), Gaps = 11/316 (3%)
Query: 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF--AEAANKHLK 188
S P A VL W+ + E Y+ I+F N + A +F E L
Sbjct: 71 ASSPAKANLVLEWKLEKLIKEGIRDCEPYSVIIRFCRETKNAEFAMKVFEFVEELGIQLN 130
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T G +NAL+ A++ G +L+ ++ + P+ TY+ IS F RL M +
Sbjct: 131 T-GIFNALINAFLSVGDLLAAMTLYEAMEDIEDCKPNSATYDAFISAFSRLGSGHAMMSW 189
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ KD+ +P++ + YL+ G++ E +++ M + P+ L +
Sbjct: 190 YLASKDAGFTPSIKAFEYLVTGFVKLDRLDDAEVVFEEMICFEIKPNFAILEAKLELLSR 249
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-CSVTDRIKKIEALMRLIPEKEYRP 367
+ R++ ELV DG + L A + + C D+I +++ L+ L+
Sbjct: 250 RKDPNRVKVFLELVS---DGNQ-ELSEATVERLIRLCLYEDKIGELDQLLSLVQGMHTSS 305
Query: 368 W--LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
L+ +IR YA D L +ME +I ++ + ++ SYFR D+L F
Sbjct: 306 LTKLHCGIIRFYANADRLSDMEHAIFQMLDNGMVFAHSEDVEAVICSYFRHKDFDRLDLF 365
Query: 426 VKRAESAGWRLCRSLY 441
+ R S ++L RS Y
Sbjct: 366 LNRIRSL-YKLTRSTY 380
>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
Length = 796
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 5/199 (2%)
Query: 126 LMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK 185
L+K L R+ + RR + G Y +K N + A +L A+
Sbjct: 136 LLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADG 195
Query: 186 HLKT----IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241
+++ + +YN ++ + G DK +LF D+ + I P++VTY +I + +
Sbjct: 196 QVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQG-IPPNVVTYTIVIDGLCKAQV 254
Query: 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301
VD E FQ++ D + PN+ TY LI GY++ W +V + + M A + PD TY L
Sbjct: 255 VDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGL 314
Query: 302 LLRGYAHSGNLPRMEKIYE 320
LL G K+++
Sbjct: 315 LLDYLCKKGKCTEARKLFD 333
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 15/175 (8%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P++V+YNT+I+ F VD F ++ D + PNV TY +I G A + + E +
Sbjct: 202 PNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGV 261
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGN---LPRMEKIYELVKHHV--DGKEFPLIRAMI 338
+Q M V P+ TY L+ GY G + RM K E+ H + D + L+ +
Sbjct: 262 FQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLK--EMSAHGLEPDCFTYGLLLDYL 319
Query: 339 CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSIN 391
C KC T+ K ++++R K +P +++ +++ YA + L EM ++
Sbjct: 320 CKKGKC--TEARKLFDSMIR----KGIKPDVSIYGIILHGYATKGALSEMHSFLD 368
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 80/181 (44%), Gaps = 1/181 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N + A+ + + +F ++++ +SP++V Y TLI +L VD E F ++
Sbjct: 382 FNIVFCAFAKKAMIGEAMDIFNKMRQQG-LSPNVVNYATLIDALCKLGRVDDAELKFNQM 440
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ ++PN+ + L+ G T W K E++ M + P+ + ++ G +
Sbjct: 441 INEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRV 500
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL 372
+ +++ +L++ + A+I + TD K+ +M + K N L
Sbjct: 501 MKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTL 560
Query: 373 L 373
L
Sbjct: 561 L 561
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 3/154 (1%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
GR+ DL + I +YNAL+ + G +D+ L D+ + P+
Sbjct: 498 GRVMKAQRLIDLMERVGTR--PDIISYNALIRGHCLVGKTDEASKLL-DIMLSVGLKPNE 554
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TYNTL+ + R +D + FQE+ + ++P V TYN ++ G + + +E+Y
Sbjct: 555 CTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLN 614
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
M TY ++L G + + + K+++
Sbjct: 615 MITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQ 648
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 43/232 (18%), Positives = 87/232 (37%), Gaps = 55/232 (23%)
Query: 123 FVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEA 182
++LM+++G+RP + ++ +G G+ + D+
Sbjct: 506 LIDLMERVGTRPDI-----------------ISYNALIRGHCLVGKTDEASKLLDIMLSV 548
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI--------- 233
K + TYN LL Y +G D S+F+++ I+P +VTYNT++
Sbjct: 549 GLKPNEC--TYNTLLHGYCRDGRIDDAYSVFQEMLSNG-ITPVVVTYNTILHGLFKTRRF 605
Query: 234 -----------------SVFGRLLL---------VDHMEAAFQEIKDSNLSPNVFTYNYL 267
S++ ++ VD FQ + +L ++ T+N +
Sbjct: 606 SEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIM 665
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
I + ++ + A ++PD TY L+ G+L + ++
Sbjct: 666 IGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMF 717
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 70/194 (36%), Gaps = 5/194 (2%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A LF K +K + Y +L Y G + S F DL ISP+ +N +
Sbjct: 328 ARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHS-FLDLMVGNGISPNHYIFNIVF 386
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
F + ++ F +++ LSPNV Y LI E + M V
Sbjct: 387 CAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVA 446
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P+ + L+ G + + EK EL V+ P + R+ K
Sbjct: 447 PNIVVFTSLVYGLC---TIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKA 503
Query: 354 EALMRLIPEKEYRP 367
+ L+ L+ RP
Sbjct: 504 QRLIDLMERVGTRP 517
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 159 YTKGIKFAG--RINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRD 215
YT I G + N VD A +F +K L+ I T+N ++GA + +G + +LF
Sbjct: 625 YTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFAT 684
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
+ + P + TY + ++ + F E++ S +PN N+L+
Sbjct: 685 ISANG-LVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLV 736
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 66/314 (21%), Positives = 122/314 (38%), Gaps = 60/314 (19%)
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAF------------------------------ 249
+ ++P + TY+ L+ F R+ ++H AAF
Sbjct: 88 SKVAPDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVVVNRLLKGLCDAKRVG 147
Query: 250 -------QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM---PDTNTY 299
+ + + +PNV +YN L+ G+ + E+ MM G V P+ +Y
Sbjct: 148 EAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSY 207
Query: 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEAL 356
++ G+ G +++K Y L D P + +I K V DR E +
Sbjct: 208 NTVINGFFTEG---QVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDR---AEGV 261
Query: 357 MRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDAFEH--KTSVTTVRIMRCIV 410
+ + +K RP N++ LI Y +E+ + + + H + T ++ +
Sbjct: 262 FQQMIDKGVRP--NIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYL 319
Query: 411 SSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID 470
+C KL + + R G + S+Y + YA++ + EM S L M I
Sbjct: 320 CKKGKCTEARKLFDSMIR---KGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGIS 376
Query: 471 CSKKTFWIMYYAYA 484
+ F I++ A+A
Sbjct: 377 PNHYIFNIVFCAFA 390
>gi|302769103|ref|XP_002967971.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
gi|300164709|gb|EFJ31318.1| hypothetical protein SELMODRAFT_145138 [Selaginella moellendorffii]
Length = 1354
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 85/181 (46%), Gaps = 18/181 (9%)
Query: 157 EEYTKGIKFAGRINNVDLAADLF-----------AEAANKHLKTIG------TYNALLGA 199
EE K IK AG ++D+ + A K ++ IG T+N L+
Sbjct: 795 EELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLIML 854
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
Y N + + Q+L R++ K N +P+I TY TLIS +GRL + E F+ I ++ P
Sbjct: 855 YSRNQMVQEAQALLREMIKTGN-APNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKP 913
Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ YN +I Y A K+EE+ + MKA P T +L+ Y G + E++
Sbjct: 914 DATAYNVMINVYRKAGEHRKIEEVIEQMKADGFEPSLTTIHMLMDSYGKGGATGKAEEVL 973
Query: 320 E 320
E
Sbjct: 974 E 974
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 23/255 (9%)
Query: 113 LFRRHSNGYAFVEL---MKQLGSRPRLAL--EVLNWRRR---QAGYGTPMTKEEYTKGIK 164
++ RH + + +L M+ G RP L V+ R R Q G + + ++ Y G++
Sbjct: 123 VYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLR 182
Query: 165 ----------FAGRINN-VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL 212
A +NN + A +F E + I TYNA++ Y G + S+
Sbjct: 183 PDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSI 242
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
FR + +E +P VTYN+++ F R ++ +E ++D+ S + TYN +I Y
Sbjct: 243 FR-IMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYG 301
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHVDGKEF 331
A M K EE+Y MK PD+ T+ +L+ +G + ++E ++K V
Sbjct: 302 KAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVR-PTL 360
Query: 332 PLIRAMICAYSKCSV 346
AMICAY+K +
Sbjct: 361 QAFSAMICAYAKADM 375
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 90/228 (39%), Gaps = 37/228 (16%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ---------------- 210
GR N LA +LF A + + YN+L+ Y +G + Q
Sbjct: 91 GRANQPGLAQELFDRAESSIGNCVQVYNSLMSVYARHGDWNSVQQLLCRMQDRGCRPDLV 150
Query: 211 --------------------SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
SL +D+ A + P +TYNTLIS + F+
Sbjct: 151 TFNIVIKARTRGGMQEGLASSLLQDVYA-AGLRPDTITYNTLISACSLNNRLSDAILIFE 209
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E++ P+++TYN +I+ Y A I+++M+ PD TY +L +A G
Sbjct: 210 EMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDG 269
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
+ +E+I +++ + MI Y K + + +++ M+
Sbjct: 270 RIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMK 317
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/324 (17%), Positives = 131/324 (40%), Gaps = 11/324 (3%)
Query: 186 HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM 245
+K + A++ +Y L + +FRDL++ + + Y+ L+S + +
Sbjct: 631 EVKDSAMHVAIIASYGKLKLWQNAEIVFRDLQRHG-FAGNTSAYSALLSAYAETGNFERA 689
Query: 246 EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
A + + L PN NY++ + A ++ E YQ + + P++ T++++
Sbjct: 690 TRALDNMVAAGLQPNAACANYVLEAFGRAGKAKELSEFYQRLPEMGITPNSRTFVVIFHA 749
Query: 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY 365
++ +GNL +Y ++ + +A++ YS+ +V E L++ I +
Sbjct: 750 FSRNGNLEEARSMYRQMREAGFSPSIQVFKALLALYSRETVE---IDAEELVKDIKKAGL 806
Query: 366 RPWLNVL--LIRVYAKEDCLEEMEKS--INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
+++ +I +Y+K L K+ + + ++ Y R V +
Sbjct: 807 ELDMDIYNHMISLYSK---LGSYRKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQMVQE 863
Query: 422 LANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYY 481
++ G S Y + + Y + E+ E V K + + +M
Sbjct: 864 AQALLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMIN 923
Query: 482 AYATCGQRRKVNQVLGLMCKNGYD 505
Y G+ RK+ +V+ M +G++
Sbjct: 924 VYRKAGEHRKIEEVIEQMKADGFE 947
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 87/215 (40%), Gaps = 41/215 (19%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKK------------------------------ 218
+I + ALL Y + + L +D+KK
Sbjct: 774 SIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYRKAALVF 833
Query: 219 ----EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
E SP T+NTLI ++ R +V +A +E+ + +PN+ TY LI+ Y
Sbjct: 834 KGMQEIGCSPDATTFNTLIMLYSRNQMVQEAQALLREMIKTGNAPNISTYTTLISAYGRL 893
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL- 333
+ E +++ + PD Y +++ Y +G ++E++ E +K DG E L
Sbjct: 894 QAYEDAELVFKSIAETGCKPDATAYNVMINVYRKAGEHRKIEEVIEQMK--ADGFEPSLT 951
Query: 334 -IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
I ++ +Y K T K E ++ +PE P
Sbjct: 952 TIHMLMDSYGKGGATG---KAEEVLETLPEIGMSP 983
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 109/239 (45%), Gaps = 21/239 (8%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+ + A+ NG ++ +S++R ++ EA SPSI + L++++ R + E ++
Sbjct: 742 TFVVIFHAFSRNGNLEEARSMYRQMR-EAGFSPSIQVFKALLALYSRETVEIDAEELVKD 800
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
IK + L ++ YN++I+ Y + K +++ M+ PD T+ L+ Y+ +
Sbjct: 801 IKKAGLELDMDIYNHMISLYSKLGSYRKAALVFKGMQEIGCSPDATTFNTLIMLYSRNQM 860
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ + + + + +I AY + + E + + I E +P
Sbjct: 861 VQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYE---DAELVFKSIAETGCKPDATA 917
Query: 372 --LLIRVYAK-------EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
++I VY K E+ +E+M+ D FE S+TT+ ++ + SY + A K
Sbjct: 918 YNVMINVYRKAGEHRKIEEVIEQMKA---DGFE--PSLTTIHML---MDSYGKGGATGK 968
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 100/232 (43%), Gaps = 7/232 (3%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I GR V+ A+ +F + TYN++L A+ +G ++ + + R +
Sbjct: 223 YNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDGRIEEVERI-RGMM 281
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++A S +TYNT+I ++G+ + E + ++K+ P+ T+ LI A
Sbjct: 282 RDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFV 341
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+ +++ M V P + ++ YA + E Y + + M
Sbjct: 342 NEAAAMFEDMLKSQVRPTLQAFSAMICAYAKADMFSDAEHTYSCMLRAGVRPDLLAYSVM 401
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEME 387
+ + K + + K L + + +P L+V +++RV+ ++ L E+E
Sbjct: 402 LDVFFKAEMPE---KCIILYKAMVGSGLKPELSVYAIMVRVFYQKSSLAEIE 450
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/276 (18%), Positives = 120/276 (43%), Gaps = 13/276 (4%)
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
N +L A+ G + + ++ L E I+P+ T+ + F R ++ + +++++
Sbjct: 709 NYVLEAFGRAGKAKELSEFYQRLP-EMGITPNSRTFVVIFHAFSRNGNLEEARSMYRQMR 767
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
++ SP++ + L+A Y + EE+ + +K + D + Y ++ Y+ G+
Sbjct: 768 EAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDMDIYNHMISLYSKLGSYR 827
Query: 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN--V 371
+ +++ ++ + +I YS+ +++ +AL+R + + P ++
Sbjct: 828 KAALVFKGMQEIGCSPDATTFNTLIMLYSR---NQMVQEAQALLREMIKTGNAPNISTYT 884
Query: 372 LLIRVYAKEDCLEEME---KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
LI Y + E+ E KSI + K T +M ++ Y + K+ +++
Sbjct: 885 TLISAYGRLQAYEDAELVFKSIAET-GCKPDATAYNVM---INVYRKAGEHRKIEEVIEQ 940
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
++ G+ + H M Y + E VL+ +
Sbjct: 941 MKADGFEPSLTTIHMLMDSYGKGGATGKAEEVLETL 976
>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
Length = 646
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 92/421 (21%), Positives = 163/421 (38%), Gaps = 77/421 (18%)
Query: 115 RRHSNGYAFVELMKQLGSRPR-LALEVL---------NWRRRQAGY----GTPMTKEEYT 160
RR G E M++ G R + V+ +W R Q+ + ++ ++YT
Sbjct: 88 RRFDEGITLFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDDYT 147
Query: 161 KGIKFAGRINN--VDLAADLFAEAANKHLKTIG------TYNALLGAYMYNGLSDKCQSL 212
I N A LF E +K G TYNALL Y G+ + L
Sbjct: 148 YNTMITACIQNSHCQEALRLFQE-----MKEAGCCPNRVTYNALLDVYGKGGMHKEASEL 202
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
+++ A ISP+IVTYN LI+ + R L D A + + L P+ FTY LI+ +
Sbjct: 203 LVEMEA-AGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAFN 261
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
A + K E + M+ P+ TY +L+ Y L M K+++ ++ +
Sbjct: 262 RAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPDLV 321
Query: 333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIND 392
+++ ++ C + + ++ + R + Y P ++ I
Sbjct: 322 TWNSLLKSFGNCGM---LTEVSNVFREMKRAGYMPGVDTFNI------------------ 360
Query: 393 AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452
++ Y RC VD + K G + + + M A +
Sbjct: 361 ----------------LIECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREG 404
Query: 453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ----RRKVNQ--------VLGLMC 500
R ++ E V +EM + S + ++YA GQ R+ +++ + G++C
Sbjct: 405 RWQQCEKVSQEMAEAGLQLSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILC 464
Query: 501 K 501
K
Sbjct: 465 K 465
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 141/314 (44%), Gaps = 6/314 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ A+ +K F +++K N +P+IVTYN LI ++GR+ +D M F+
Sbjct: 252 TYCTLISAFNRAERYEKALETFTEMRK-TNCTPNIVTYNILIDIYGRMEKLDDMMKVFKF 310
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ N +P++ T+N L+ + M +V +++ MK MP +T+ +L+ Y G
Sbjct: 311 MQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILIECYGRCGY 370
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK--EYRPWL 369
+ IY+ + P A++ + ++ R ++ E + + + E +
Sbjct: 371 VDYSVDIYKGLLRTGLQPTVPTFAALMASLAR---EGRWQQCEKVSQEMAEAGLQLSDAC 427
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
+ LI YA ++ K I++ + + + + V +Y +C ++ + +
Sbjct: 428 HAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQLALNQL 487
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
G ++++ + M A + +E +L+E+ ++ T+ + Y G
Sbjct: 488 YDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMY 547
Query: 490 RKVNQVLGLMCKNG 503
K +V+ M + G
Sbjct: 548 HKAEEVMSEMRRAG 561
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 1/142 (0%)
Query: 184 NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
N H I +NA++ G ++ L +++K A + P VTYN L+S++GR +
Sbjct: 490 NGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRK-AQLKPDGVTYNCLMSMYGREGMYH 548
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
E E++ + +PN+ TYN L+ Y ++ M A V PD T+ L+
Sbjct: 549 KAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLV 608
Query: 304 RGYAHSGNLPRMEKIYELVKHH 325
Y+ G + E + H
Sbjct: 609 GSYSSLGLYKEALSVIEYMTEH 630
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 172 VDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
++ A L E LK G TYN L+ Y G+ K + + ++++ A +P+++TYN
Sbjct: 512 IERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEVMSEMRR-AGKAPNLITYN 570
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
TL+ + + +D F ++ + + P+ FT+N L+ Y + ++ + + + M
Sbjct: 571 TLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSLGLYKEALSVIEYMTEH 630
Query: 291 PVMPDTNTYLLLLRGY 306
P T+ LL GY
Sbjct: 631 GCQPTQITFKALLDGY 646
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/318 (20%), Positives = 121/318 (38%), Gaps = 50/318 (15%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDH--------------------------- 244
LF LK++ + S + Y +LIS+ R D
Sbjct: 60 LFESLKQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVMLDLY 119
Query: 245 ---------MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
+++ FQE+KD +SP+ +TYN +I + + ++Q MK P+
Sbjct: 120 GKRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMKEAGCCPN 179
Query: 296 TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI--RAMICAYSKCSVTDRIKKI 353
TY LL Y G ++ LV+ G ++ +I AY++ + D +
Sbjct: 180 RVTYNALLDVYGKGGMHKEASEL--LVEMEAAGISPNIVTYNELIAAYARAGLCD---EA 234
Query: 354 EALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIM--RCI 409
AL + + K P + LI + + E EK++ E + + T I+ +
Sbjct: 235 AALKKSLLSKGLCPDEFTYCTLISAFNRA---ERYEKALETFTEMRKTNCTPNIVTYNIL 291
Query: 410 VSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI 469
+ Y R +D + K + ++S + + + + E+ +V +EM+
Sbjct: 292 IDIYGRMEKLDDMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGY 351
Query: 470 DCSKKTFWIMYYAYATCG 487
TF I+ Y CG
Sbjct: 352 MPGVDTFNILIECYGRCG 369
>gi|297826989|ref|XP_002881377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327216|gb|EFH57636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 589
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 134/317 (42%), Gaps = 37/317 (11%)
Query: 122 AFVE-LMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
A++E LMK+ G+ + A++V +R T E Y I G+ + ++ LF
Sbjct: 243 AYIEGLMKRKGNTEQ-AIDVFQRMKRDR---CKPTTETYNLMINLYGKASKSYMSWKLFC 298
Query: 181 EAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANIS---------------- 223
E + K I TY AL+ A+ GL +K + +F L+++ +I
Sbjct: 299 EMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHIDSRAGYPYGAAEIFSLM 358
Query: 224 ------PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P +YN ++ +GR L EA F+E+K ++P + ++ L++ Y A
Sbjct: 359 QHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSRARDV 418
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
K E I + M V PDT +L Y G +MEKI +++ + +
Sbjct: 419 TKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNIL 478
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRV--YAKE----DCLEEMEKSIN 391
I Y K +R IE L + E+ ++P + R+ Y+++ CLE E+ I+
Sbjct: 479 INIYGKAGFLER---IEELFVELKERNFKPDVVTWTSRIGAYSRKKLYVKCLEIFEEMID 535
Query: 392 DAFEHKTSVTTVRIMRC 408
V + C
Sbjct: 536 SGCAPDGGTAKVLLSAC 552
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 132/312 (42%), Gaps = 22/312 (7%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI-SVFGRLLLVDHMEA 247
T TY L+ AY GL +K +++ +++ ++SPS+ YN I + R +
Sbjct: 202 TEDTYTLLIKAYCMAGLIEKAEAVLIEMQNH-HVSPSVTVYNAYIEGLMKRKGNTEQAID 260
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
FQ +K P TYN +I Y A +++ M++ P+ TY L+ +A
Sbjct: 261 VFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLFCEMRSHQCKPNICTYTALVNAFA 320
Query: 308 HSGNLPRMEKIYELVKH--HVDGKE-FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE 364
G + E+I+E ++ H+D + +P A +I +LM+ + +
Sbjct: 321 REGLCEKAEEIFEQLQEDGHIDSRAGYPYGAA---------------EIFSLMQHMGCEP 365
Query: 365 YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
R N++ + Y + + E ++ + + T++ ++S+Y R V K
Sbjct: 366 DRASYNIM-VDAYGRAGLHSDAE-AVFEEMKRLGIAPTMKSHMLLLSAYSRARDVTKCEA 423
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
VK G + +S + +Y + +ME +L EMEN T+ I+ Y
Sbjct: 424 IVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYG 483
Query: 485 TCGQRRKVNQVL 496
G ++ ++
Sbjct: 484 KAGFLERIEELF 495
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 77/190 (40%), Gaps = 17/190 (8%)
Query: 117 HSNGYAFVELMKQLGSRPRLALEVL----NWRRRQAGYGTPMTKEEYTKGIK-------- 164
HS+ A E MK+LG P + +L R R + KE G++
Sbjct: 383 HSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSRARDVTKCEAIVKEMSENGVEPDTFVLNS 442
Query: 165 ---FAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
GR+ + AE N I TYN L+ Y G ++ + LF +LK E
Sbjct: 443 MLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELK-ER 501
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
N P +VT+ + I + R L F+E+ DS +P+ T L++ + +V
Sbjct: 502 NFKPDVVTWTSRIGAYSRKKLYVKCLEIFEEMIDSGCAPDGGTAKVLLSACSSEDQVEQV 561
Query: 281 EEIYQMMKAG 290
+ + M G
Sbjct: 562 TSVLRTMHKG 571
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ S+ P+V +N LI Y + + + E +Y + +P +TY LL++ Y +G
Sbjct: 159 LRRSSFQPDVICFNLLIDAYGQKFRFKEAESLYVQLLESRCVPTEDTYTLLIKAYCMAGL 218
Query: 312 LPRMEKI-YELVKHHV 326
+ + E + E+ HHV
Sbjct: 219 IEKAEAVLIEMQNHHV 234
>gi|302761054|ref|XP_002963949.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
gi|300167678|gb|EFJ34282.1| hypothetical protein SELMODRAFT_166434 [Selaginella moellendorffii]
Length = 1365
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 84/181 (46%), Gaps = 18/181 (9%)
Query: 157 EEYTKGIKFAGRINNVDLAADLF-----------AEAANKHLKTIG------TYNALLGA 199
EE K IK AG ++D+ + A K ++ IG T+N L+
Sbjct: 806 EELVKDIKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIML 865
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
Y N + + Q+L R++ K N +P+I TY TLIS +GRL + E F+ I ++ P
Sbjct: 866 YSRNQMVQEAQALLREMIKTGN-APNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKP 924
Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ YN +I Y A K+EEI + MK P T +L+ Y G + E++
Sbjct: 925 DATAYNVMINVYRKAGEHRKIEEIIEQMKVDGFEPSLTTIHMLMDSYGKGGATGKAEEVL 984
Query: 320 E 320
E
Sbjct: 985 E 985
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 116/255 (45%), Gaps = 23/255 (9%)
Query: 113 LFRRHSNGYAFVEL---MKQLGSRPRLAL--EVLNWRRR---QAGYGTPMTKEEYTKGIK 164
++ RH + + +L M+ G RP L V+ R R Q G + + ++ Y G++
Sbjct: 134 VYARHGDWNSVQQLLCRMQDRGCRPDLVTFNIVIKARTRGGMQEGLASSLLQDVYAAGLR 193
Query: 165 ----------FAGRINNVDLAADLFAEAANKHL--KTIGTYNALLGAYMYNGLSDKCQSL 212
A +NN A L E + I TYNA++ Y G + S+
Sbjct: 194 PDTITYNTLISACSLNNRLSDAILIFEEMQRQGCDPDIWTYNAMISVYGRAGRVEAASSI 253
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
FR + +E +P VTYN+++ F R ++ +E ++D+ S + TYN +I Y
Sbjct: 254 FR-IMQEQGFTPDAVTYNSVLHAFARDGRIEEVERIRGMMRDARCSSDEITYNTMIHMYG 312
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHVDGKEF 331
A M K EE+Y MK PD+ T+ +L+ +G + ++E ++K V
Sbjct: 313 KAGMHRKAEELYVQMKEEGRCPDSVTFTVLIDTLGKAGFVNEAAAMFEDMLKSQVR-PTL 371
Query: 332 PLIRAMICAYSKCSV 346
AMICAY+K +
Sbjct: 372 QAFSAMICAYAKADM 386
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 90/228 (39%), Gaps = 37/228 (16%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ---------------- 210
GR N LA +LF A + + YN+L+ Y +G + Q
Sbjct: 102 GRANQPGLAQELFDRAESSIGNCVQVYNSLMSVYARHGDWNSVQQLLCRMQDRGCRPDLV 161
Query: 211 --------------------SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
SL +D+ A + P +TYNTLIS + F+
Sbjct: 162 TFNIVIKARTRGGMQEGLASSLLQDVYA-AGLRPDTITYNTLISACSLNNRLSDAILIFE 220
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E++ P+++TYN +I+ Y A I+++M+ PD TY +L +A G
Sbjct: 221 EMQRQGCDPDIWTYNAMISVYGRAGRVEAASSIFRIMQEQGFTPDAVTYNSVLHAFARDG 280
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
+ +E+I +++ + MI Y K + + +++ M+
Sbjct: 281 RIEEVERIRGMMRDARCSSDEITYNTMIHMYGKAGMHRKAEELYVQMK 328
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/321 (17%), Positives = 128/321 (39%), Gaps = 7/321 (2%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
+K + A++ +Y L + +FRDL++ + + Y+ L+S + +
Sbjct: 643 VKDSAMHVAIIASYGKLKLWQNAEIVFRDLQQHG-FAGNTSAYSALLSAYAETGNFERAT 701
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
A + + L PN NY++ + A ++ E +Q + + P++ T++++ +
Sbjct: 702 RALDNMVAAGLQPNATCANYVLEAFGRAGKAKEISEFFQRLPEMGISPNSRTFVVIFHAF 761
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
+ +GNL +Y +K + +A++ YS+ +V E L++ I +
Sbjct: 762 SRNGNLEEARSMYRQMKEAGFSPSIQVFKALLALYSRETVE---IDAEELVKDIKKAGLE 818
Query: 367 PWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
+++ +I +Y+K E S ++ Y R V +
Sbjct: 819 LDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDAT-TFNTLIMLYSRNQMVQEAQA 877
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
++ G S Y + + Y + E+ E V K + + +M Y
Sbjct: 878 LLREMIKTGNAPNISTYTTLISAYGRLQAYEDAELVFKSIAETGCKPDATAYNVMINVYR 937
Query: 485 TCGQRRKVNQVLGLMCKNGYD 505
G+ RK+ +++ M +G++
Sbjct: 938 KAGEHRKIEEIIEQMKVDGFE 958
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 108/239 (45%), Gaps = 21/239 (8%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+ + A+ NG ++ +S++R +K EA SPSI + L++++ R + E ++
Sbjct: 753 TFVVIFHAFSRNGNLEEARSMYRQMK-EAGFSPSIQVFKALLALYSRETVEIDAEELVKD 811
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
IK + L ++ YN++I+ Y + +++ M+ PD T+ L+ Y+ +
Sbjct: 812 IKKAGLELDIDIYNHMISLYSKLGSYRNAALVFKGMQEIGCSPDATTFNTLIMLYSRNQM 871
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ + + + + +I AY + + E + + I E +P
Sbjct: 872 VQEAQALLREMIKTGNAPNISTYTTLISAYGRLQAYE---DAELVFKSIAETGCKPDATA 928
Query: 372 --LLIRVYAK-------EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
++I VY K E+ +E+M+ D FE S+TT+ ++ + SY + A K
Sbjct: 929 YNVMINVYRKAGEHRKIEEIIEQMKV---DGFE--PSLTTIHML---MDSYGKGGATGK 979
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 53/276 (19%), Positives = 118/276 (42%), Gaps = 13/276 (4%)
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
N +L A+ G + + F+ L E ISP+ T+ + F R ++ + ++++K
Sbjct: 720 NYVLEAFGRAGKAKEISEFFQRLP-EMGISPNSRTFVVIFHAFSRNGNLEEARSMYRQMK 778
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
++ SP++ + L+A Y + EE+ + +K + D + Y ++ Y+ G+
Sbjct: 779 EAGFSPSIQVFKALLALYSRETVEIDAEELVKDIKKAGLELDIDIYNHMISLYSKLGSYR 838
Query: 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN--V 371
+++ ++ + +I YS+ +++ +AL+R + + P ++
Sbjct: 839 NAALVFKGMQEIGCSPDATTFNTLIMLYSR---NQMVQEAQALLREMIKTGNAPNISTYT 895
Query: 372 LLIRVYAKEDCLEEME---KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
LI Y + E+ E KSI + K T +M ++ Y + K+ +++
Sbjct: 896 TLISAYGRLQAYEDAELVFKSIAET-GCKPDATAYNVM---INVYRKAGEHRKIEEIIEQ 951
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
+ G+ + H M Y + E VL+ +
Sbjct: 952 MKVDGFEPSLTTIHMLMDSYGKGGATGKAEEVLETL 987
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 146/324 (45%), Gaps = 20/324 (6%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKC 209
G + + Y I++ GR +D A ++F E K + TY L+ A G +
Sbjct: 95 GCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEA 154
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+S F D E ++P+I TYN L+ F ++ +D F E+K P+V TYN L+
Sbjct: 155 RSFF-DAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLD 213
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD-G 328
+A G +++ M PD+ TY L+ G SG R+E+ +++ + VD G
Sbjct: 214 ALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSG---RVEEAHKVFREMVDRG 270
Query: 329 KEFPLI--RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP---WLNVLL--IRVYAKED 381
L+ +++ +K DR+ K LM+ + K + P N ++ + K D
Sbjct: 271 VAVDLVNYNSLLATLAKAGNMDRVWK---LMKEMSRKGFHPDAFSFNTIMDALGKANKPD 327
Query: 382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLY 441
E+ + ++ K + + I ++ SY R + ++ AG+ Y
Sbjct: 328 AAREVFARMVES-GCKPDLISYNI---LIDSYARFGDAAQARQMLEEMVEAGFIPETKTY 383
Query: 442 HSKMVMYASQRRVEEMESVLKEME 465
+S + A+ +V+E +VL+EME
Sbjct: 384 NSLIHWLATDGQVDEAFAVLEEME 407
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 117/281 (41%), Gaps = 22/281 (7%)
Query: 44 HSFTRDLCAPATHTVFPTLVRLLSETLTYPDAR----------VRKDLTQTVSALRDELL 93
H T D C+P ++T + TLV L ++ +A V DL S L L
Sbjct: 229 HKMTGDGCSPDSYT-YSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLL--ATL 285
Query: 94 ANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYG 151
A ++D+V++++ E F H + ++F +M LG ++P A EV R G
Sbjct: 286 AKAGNMDRVWKLMKEMSRKGF--HPDAFSFNTIMDALGKANKPDAAREVFA---RMVESG 340
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQ 210
Y I R + A + E + TYN+L+ +G D+
Sbjct: 341 CKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAF 400
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
++ +++ A P +VTYN L+ + G+ FQ++KD + P+ +Y I G
Sbjct: 401 AVLEEMET-AGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDG 459
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +++ MKA D Y +L+R +G+
Sbjct: 460 LAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAHRAGD 500
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 82/211 (38%), Gaps = 13/211 (6%)
Query: 119 NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADL 178
+ Y + L+ LG R+ E R G + Y + + N+D L
Sbjct: 239 DSYTYSTLVNGLGKSGRVE-EAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKL 297
Query: 179 FAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
E + K ++N ++ A D + +F + E+ P +++YN LI +
Sbjct: 298 MKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMV-ESGCKPDLISYNILIDSYA 356
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW--GKVEEIYQM---MKAGPV 292
R +E+ ++ P TYN LI W+ G+V+E + + M+
Sbjct: 357 RFGDAAQARQMLEEMVEAGFIPETKTYNSLI-----HWLATDGQVDEAFAVLEEMETAGC 411
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
PD TY L+ G R ++++ +K
Sbjct: 412 RPDVVTYNRLMDMLGKRGENQRAARLFQQMK 442
>gi|224076660|ref|XP_002304977.1| predicted protein [Populus trichocarpa]
gi|222847941|gb|EEE85488.1| predicted protein [Populus trichocarpa]
Length = 381
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 89/183 (48%), Gaps = 4/183 (2%)
Query: 154 MTKEEYT-KGIKFAGRINNVDLAADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQS 211
M+KE + + I G D A +F E K +T+ ++NALLGA + + D+
Sbjct: 91 MSKEGFNARLISLYGSSGMFDNARKVFDEMLERKCARTVLSFNALLGACVNSKKFDEVGG 150
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
LFR L +E I P +V+YNT++ F + +D + EI+ L P++ T+N L+ G
Sbjct: 151 LFRGLSEELEIEPDLVSYNTVMKAFCEMGSLDSAVSLLDEIEKKGLKPDLITFNTLLNGL 210
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
+ E I+Q MK V PD +Y L G A + K+ E +K +G EF
Sbjct: 211 YANGRFDAGERIWQRMKEKNVKPDGRSYNEKLLGLALEKRMKDATKVVEEMKS--EGIEF 268
Query: 332 PLI 334
+
Sbjct: 269 DIF 271
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 14/192 (7%)
Query: 169 INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+ ++D A L E K LK + T+N LL NG D + +++ +K E N+ P
Sbjct: 178 MGSLDSAVSLLDEIEKKGLKPDLITFNTLLNGLYANGRFDAGERIWQRMK-EKNVKPDGR 236
Query: 228 TYNTLISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
+YN + G L L M+ A +E+K + ++F+YN LI G++ + + Y
Sbjct: 237 SYNE--KLLG-LALEKRMKDATKVVEEMKSEGIEFDIFSYNALIRGFVNEGDLEEAKGWY 293
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK---EFPLIRAMICAY 341
++ + PD T+ L+ G++ ++L K + K + LI+ ++ A
Sbjct: 294 GEIRKSDIKPDKLTFKTLIPFVVEKGDVAFA---FDLCKDALSSKLAVKEALIQPVLDAL 350
Query: 342 SKCSVTDRIKKI 353
+K S + K++
Sbjct: 351 AKESKINEAKEL 362
>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 730
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/405 (21%), Positives = 170/405 (41%), Gaps = 21/405 (5%)
Query: 99 LDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEE 158
+ ++F+ L E+G L + YA+ L+ L SR R E L + + G +
Sbjct: 101 VSRLFKSLREEGYPL-----DVYAYTSLISAL-SRNRKFKEALGFFEQMKEAGPQPSLVT 154
Query: 159 YTKGIKFAGRINNV-DLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDL 216
Y I G+ + +LF E + ++ TYN + A L ++ LF +
Sbjct: 155 YNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQM 214
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
K +N +P VTYN L+ V+G+ + +E++ + PN+ TYN L++ + A +
Sbjct: 215 KS-SNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGL 273
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336
E+ M + + PD TY LL Y+ +G + + +IY ++ A
Sbjct: 274 CNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNA 333
Query: 337 MICAYSKC-SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIND--- 392
+I + K + ++ + E + E + W + L+ + K E+ K
Sbjct: 334 LIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNS--LLGAFGKNGMYSEVLKVFRGMKK 391
Query: 393 -AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451
FE + + ++ +Y RC + D+ + AG + +++ + A +
Sbjct: 392 AGFEPDKATFNI-----LIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAALARE 446
Query: 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
R E E +L E+ + + M +AYA G+ K+ +++
Sbjct: 447 GRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMV 491
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 130/318 (40%), Gaps = 11/318 (3%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I T+N+LLGA+ NG+ + +FR +KK A P T+N LI +GR D + +
Sbjct: 363 IVTWNSLLGAFGKNGMYSEVLKVFRGMKK-AGFEPDKATFNILIEAYGRCGSSDQALSIY 421
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + +P++ T+N L+A W E I + P+ Y +L YA+
Sbjct: 422 DGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANG 481
Query: 310 GNLPRMEKIYELVKH-HVDGKEFP--LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
G L EK+ E+V H F L++ + YSKCS+ D + MR
Sbjct: 482 GEL---EKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDT 538
Query: 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVRIMRCIVSSYFRCNAVDKLANF 425
N +I +Y K+ +++ + A T + V C++ Y R K
Sbjct: 539 STFNA-MISMYGKKGMMDKATDTF--ALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEAT 595
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
++ +AG Y++ + Y+ ++ + EM + I T+ Y
Sbjct: 596 LRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVN 655
Query: 486 CGQRRKVNQVLGLMCKNG 503
G + V+ M K G
Sbjct: 656 GGMFPEALSVVKHMHKTG 673
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 138/341 (40%), Gaps = 11/341 (3%)
Query: 176 ADLFAEAAN--KHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
A + EAAN K +++ G TYN LL A+ GL + + +D I P +
Sbjct: 236 AGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEM-KDSMVSKGIEPDVF 294
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TY +L+S + R V+ + +++ SN +PN FT+N LI + + ++ I++ M
Sbjct: 295 TYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDM 354
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347
+A V PD T+ LL + +G + K++ +K + +I AY +C +
Sbjct: 355 QACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSS 414
Query: 348 DRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMR 407
D+ I M N LL + A+E E E I D +
Sbjct: 415 DQALSIYDGMLQAGCTPDLATFNTLLAAL-AREGRWEHAEL-ILDELNRSSYKPNDIAYA 472
Query: 408 CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467
++ +Y ++KL V + + L + +++Y+ V+E E M ++
Sbjct: 473 SMLHAYANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHH 532
Query: 468 KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV 508
TF M Y G K L+ G + V
Sbjct: 533 GYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDV 573
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 2/162 (1%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
I G+ +D A D FA + L+ + TYN L+G Y G+ KC++ R+ A
Sbjct: 545 ISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMA-AG 603
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
+P +V+YNT+I + + + F E+ + + P+ FTYN + Y+ M+ +
Sbjct: 604 QTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEAL 663
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+ + M PD TY L+ Y G +E+I + +K
Sbjct: 664 SVVKHMHKTGCKPDEVTYRTLVDAYCKIGKFEEVERILKFIK 705
>gi|449464322|ref|XP_004149878.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Cucumis sativus]
Length = 760
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 4/173 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN +L + + + + + D+K ISP +VTYNT+I+ + R +++ E F E
Sbjct: 261 TYNVMLWGFFLSLRLETAKRFYEDMKSRG-ISPDVVTYNTMINGYCRFKMMEEAEQFFTE 319
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N++P V +Y +I GY++ +++ MKA P+ TY LL G +
Sbjct: 320 MKGKNIAPTVISYTTMIKGYVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEK 379
Query: 312 LPRMEKIY-ELVKHHVDGKEFPL-IRAMICAYSKCSVTDRIKKIEALMRL-IP 361
LP KI E+V H K+ + +R + C + + ++A++RL IP
Sbjct: 380 LPEARKILTEMVTRHFAPKDNSIFMRLLSCQCKHGDLDAAMHVLKAMIRLSIP 432
>gi|449507993|ref|XP_004163187.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g37230-like [Cucumis sativus]
Length = 760
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 4/173 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN +L + + + + + D+K ISP +VTYNT+I+ + R +++ E F E
Sbjct: 261 TYNVMLWGFFLSLRLETAKRFYEDMKSRG-ISPDVVTYNTMINGYCRFKMMEEAEQFFTE 319
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N++P V +Y +I GY++ +++ MKA P+ TY LL G +
Sbjct: 320 MKGKNIAPTVISYTTMIKGYVSVSRADDALRLFEEMKAAGEKPNDITYSTLLPGLCDAEK 379
Query: 312 LPRMEKIY-ELVKHHVDGKEFPL-IRAMICAYSKCSVTDRIKKIEALMRL-IP 361
LP KI E+V H K+ + +R + C + + ++A++RL IP
Sbjct: 380 LPEARKILTEMVTRHFAPKDNSIFMRLLSCQCKHGDLDAAMHVLKAMIRLSIP 432
>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
Length = 795
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 137/327 (41%), Gaps = 30/327 (9%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEA--NISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+YNAL+ S + L + + N SP++V+YNT+I F + VD F
Sbjct: 164 SYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLF 223
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
E+ L P+V TYN LI G A K I Q M VMPDT TY +++RGY
Sbjct: 224 HEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSL 283
Query: 310 GNLPRMEKIYELVKHHVDGKE-----FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE 364
G L E + L K G + + L+ C +C+ + ++++R K
Sbjct: 284 GQLE--EAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSV--FDSMVR----KG 335
Query: 365 YRPWLNV--LLIRVYAKEDCL----EEMEKSINDA--FEHKTSVTTVRIMRCIVSSYFRC 416
+P + +L+ YA + L + ++ I D FEH R ++ +Y +
Sbjct: 336 QKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEH-------RAFNILICAYAKH 388
Query: 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476
AVDK G R Y + + + RVE+ +M + + + +F
Sbjct: 389 GAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISF 448
Query: 477 WIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ + + G+ +KV ++ M G
Sbjct: 449 TSLIHGLCSIGEWKKVEELAFEMINRG 475
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 13/204 (6%)
Query: 125 ELMKQL--GSRPRLALEVLNWRRRQAGYGTP--MTKEEYTKGIKFAGRINN-VDLAADLF 179
+L+K L G+R A++++ R + GY TP + KG+ + ++L +
Sbjct: 131 QLIKGLCDGNRTDDAMDMVFRRMPELGY-TPDVFSYNALIKGLCVEKKSQEALELLIHMT 189
Query: 180 AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
A+ + +YN ++ + G DK LF ++ + + P +VTYN+LI +
Sbjct: 190 ADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQG-LPPDVVTYNSLIDGLCKA 248
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK---AGPVMPDT 296
+D A Q + D + P+ TYN +I GY + G++EE +++K + PD
Sbjct: 249 QAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCS---LGQLEEAVRLLKKMSGSGLQPDV 305
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYE 320
TY LL++ Y G +++
Sbjct: 306 VTYSLLIQYYCKIGRCAEARSVFD 329
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 123/289 (42%), Gaps = 26/289 (8%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+N L+ AY +G DK + F ++++ + P +V+Y+T+I + + V+ F +
Sbjct: 377 AFNILICAYAKHGAVDKAMTAFTEMRQNG-LRPDVVSYSTVIHILCKTGRVEDAVYHFNQ 435
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI-YQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ LSPN+ ++ LI G + W KVEE+ ++M+ G + PD ++ G
Sbjct: 436 MVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRG-IHPDAIFMNTIMDNLCKEG 494
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--W 368
+ + +++V H + +I Y C V + I+ L R++ RP W
Sbjct: 495 RVVEAQDFFDMVIHIGVKPDVVSYNTLIDGY--CFVGKMDESIKQLDRMV-SIGLRPDSW 551
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
L+ Y K +E+ + F C ++S + + + V
Sbjct: 552 TYNSLLNGYFKNGRVEDALALYREMFRKDVKF-------CAITSNIMLHGLFQAGRIVA- 603
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM-ENYKIDCSKKTF 476
R LY KMV +Q R+E +VL + EN +D + + F
Sbjct: 604 --------ARELYM-KMVDRGTQLRIETYNTVLGGLCENSCVDEALRMF 643
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 116/271 (42%), Gaps = 34/271 (12%)
Query: 119 NGYAFV----ELMKQLGSRPRLALEVLNWRRRQA--GY--------GTPMTKEEYTKGIK 164
+GY FV E +KQL + L +W GY + +E + K +K
Sbjct: 523 DGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVK 582
Query: 165 FAGRINNVDL-----------AADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSL 212
F +N+ L A +L+ + ++ + I TYN +LG N D+ +
Sbjct: 583 FCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRM 642
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
F DL+ + + T++ +I+ ++ +D ++ F + P+V TY+ +I ++
Sbjct: 643 FEDLRSK-EFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHI 701
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
+ + + ++ M+ D++ +++R G++ R L K +D K F
Sbjct: 702 EEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTY--LTK--IDEKNFS 757
Query: 333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
L A A V++ KK + ++ +PEK
Sbjct: 758 L-EASTAALLIPIVSE--KKYQKEVKFLPEK 785
>gi|168016406|ref|XP_001760740.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688100|gb|EDQ74479.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 466
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/366 (22%), Positives = 157/366 (42%), Gaps = 21/366 (5%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
AL V R Q Y ++ Y K + R+ A++LF L+ T+ + A
Sbjct: 103 ALRVFELVRIQEWYTAEVST--YVKLLTMLARVKQPQAASNLFDFLLQDKLRPTLEIFTA 160
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ + + L K +F ++ P Y T+I L D + F E+
Sbjct: 161 LITVFTKSNLLKKAFEVFEQMRLFDGCLPDKYAYTTMIKGCCDAGLYDQAKKLFNEMMRE 220
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
+ P + TYN LI GY A ++ ++E + +M+A + PDT T+ L+R + +P M
Sbjct: 221 GVEPTIVTYNTLIFGYGKAGLFAEIEYLLSLMEANGITPDTITWNTLIRVFGLHNRIPEM 280
Query: 316 EKIYE-LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--- 371
E+ YE L+ + E L ++I Y + + +++ + MR + P V
Sbjct: 281 EQAYEGLLAQGLMADEVTL-NSLIGTYGRAGLYGKMECVTDFMR----RYSYPMTTVTYN 335
Query: 372 LLIRVYAKEDCLEEMEKSIN--DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
++I +Y K +E+M+ + A K + T + + + ++K+ V+
Sbjct: 336 IIIEIYGKARKIEQMDTAFKRMKAQGLKPNCITFSSILSAYGKHGEWHKIEKIMRQVRHY 395
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
+A ++Y++ + + E ME + +EM+ + T+ + AY G+
Sbjct: 396 NAAD----TAVYNAAIDAHRRALDFEAMEKLFEEMKMEGVAPDGITYTTLIEAY---GRV 448
Query: 490 RKVNQV 495
RK+ +
Sbjct: 449 RKLQKA 454
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 38/164 (23%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T N+L+G Y GL K + + D + + + VTYN +I ++G+ ++ M+ AF+
Sbjct: 298 TLNSLIGTYGRAGLYGKMECV-TDFMRRYSYPMTTVTYNIIIEIYGKARKIEQMDTAFKR 356
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI---------------------------- 283
+K L PN T++ +++ Y W K+E+I
Sbjct: 357 MKAQGLKPNCITFSSILSAYGKHGEWHKIEKIMRQVRHYNAADTAVYNAAIDAHRRALDF 416
Query: 284 ------YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321
++ MK V PD TY L+ Y G + +++K EL
Sbjct: 417 EAMEKLFEEMKMEGVAPDGITYTTLIEAY---GRVRKLQKAREL 457
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/283 (19%), Positives = 118/283 (41%), Gaps = 19/283 (6%)
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
+ + TY L+++ R+ F + L P + + LI + + + K E
Sbjct: 117 TAEVSTYVKLLTMLARVKQPQAASNLFDFLLQDKLRPTLEIFTALITVFTKSNLLKKAFE 176
Query: 283 IYQMMKA-GPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLI---RAM 337
+++ M+ +PD Y +++G +G + +K++ E+++ V+ P I +
Sbjct: 177 VFEQMRLFDGCLPDKYAYTTMIKGCCDAGLYDQAKKLFNEMMREGVE----PTIVTYNTL 232
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRP----WLNVLLIRVYAKEDCLEEMEKSINDA 393
I Y K + +IE L+ L+ P W LIRV+ + + EME++
Sbjct: 233 IFGYGKAGL---FAEIEYLLSLMEANGITPDTITWNT--LIRVFGLHNRIPEMEQAYEGL 287
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
V + ++ +Y R K+ + + Y+ + +Y R+
Sbjct: 288 LAQGLMADEV-TLNSLIGTYGRAGLYGKMECVTDFMRRYSYPMTTVTYNIIIEIYGKARK 346
Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
+E+M++ K M+ + + TF + AY G+ K+ +++
Sbjct: 347 IEQMDTAFKRMKAQGLKPNCITFSSILSAYGKHGEWHKIEKIM 389
>gi|356524760|ref|XP_003530996.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Glycine max]
Length = 381
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 1/147 (0%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
I G+ A +F E ++ +T+ + NALL AY+++ D LFRDL + +
Sbjct: 100 ISLYGKSGMTKHARKVFDEMPQRNCSRTVLSLNALLAAYLHSRKYDIVGELFRDLPTQLS 159
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
I P +VTYNT+I F D + FQEI++ LSP+ T+N L+ G + + + E
Sbjct: 160 IKPDLVTYNTIIKAFCEKGSFDSALSVFQEIEEKGLSPDSITFNTLLDGLYSKGRFEEGE 219
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAH 308
++++ M V P +Y L G A
Sbjct: 220 KVWEQMGVKNVAPGVRSYCSKLVGLAE 246
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ Y +G++ + +F ++ + N S ++++ N L++ + D + F+++
Sbjct: 99 LISLYGKSGMTKHARKVFDEMPQR-NCSRTVLSLNALLAAYLHSRKYDIVGELFRDLPTQ 157
Query: 256 -NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
++ P++ TYN +I + + ++Q ++ + PD+ T+ LL G G
Sbjct: 158 LSIKPDLVTYNTIIKAFCEKGSFDSALSVFQEIEEKGLSPDSITFNTLLDGLYSKGRFEE 217
Query: 315 MEKIYE 320
EK++E
Sbjct: 218 GEKVWE 223
>gi|15219808|ref|NP_176276.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097554|sp|O22714.1|PPR86_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g60770
gi|2462744|gb|AAB71963.1| Hypothetical protein [Arabidopsis thaliana]
gi|27754491|gb|AAO22693.1| unknown protein [Arabidopsis thaliana]
gi|28393975|gb|AAO42395.1| unknown protein [Arabidopsis thaliana]
gi|332195609|gb|AEE33730.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 491
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 124/251 (49%), Gaps = 6/251 (2%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
KT TY +LL Y L++K + L +K E NI+PS ++YN+L++++ + + + A
Sbjct: 121 KTELTYGSLLNCYCKELLTEKAEGLLNKMK-ELNITPSSMSYNSLMTLYTKTGETEKVPA 179
Query: 248 AFQEIKDSNLSPNVFTYN-YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
QE+K N+ P+ +TYN ++ A T + G I +M + G V PD TY + Y
Sbjct: 180 MIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIY 239
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL-IPEKEY 365
+G + EK + ++ ++F + +I Y + + +I +RL IP+
Sbjct: 240 VDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSN 299
Query: 366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
+LN +I+V K + L E ++ ++ S +RI+ ++ +Y + + K
Sbjct: 300 VAYLN--MIQVLVKLNDLPGAE-TLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANEL 356
Query: 426 VKRAESAGWRL 436
++A G +L
Sbjct: 357 KEKAPRRGGKL 367
>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
Length = 833
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 105/232 (45%), Gaps = 12/232 (5%)
Query: 119 NGYAFVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAA 176
N F +L+K L RL A +L WR + +G Y +K N + A
Sbjct: 229 NHIVFNQLLKGLCDAKRLDEATNILLWRMPE--FGCTPNVVSYNTLVKGFCNENRAEEAL 286
Query: 177 DLFAEAANKHLKT----IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
+L A+ + + +YN ++ + G DK +LF + + I P +VTYNT+
Sbjct: 287 ELLHVMADDQGLSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMI-DRGIPPDVVTYNTV 345
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I + +VD +A FQ++ D + P+ TYN LI GY++ W +V + + M +
Sbjct: 346 IDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDL 405
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHVDGKEFPLIRAMICAYSK 343
PD Y LLL +G I++ +++ + K +I +C + K
Sbjct: 406 EPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGI--KPDAMIDEAVCIFDK 455
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 106/250 (42%), Gaps = 13/250 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN L+ + G +D+ L D+ + P+ TYNTL+ + + +D + +E
Sbjct: 560 SYNTLVDGHCLTGRTDEAAKLL-DVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLRE 618
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + +P+V TYN ++ G + + +E+Y M D TY ++L G +
Sbjct: 619 MLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNC 678
Query: 312 LPRMEKIYEL-----VKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
+ K+++ ++ H+ +I A++ K D I A L+P+ E
Sbjct: 679 VDEAFKMFQSLCSKGLQLHIITFNI-MIGALLKGGKKEDAMDLFATISA-YGLVPDVETY 736
Query: 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
+ LI KE LEE+ + A E + R++ +V + + + ++
Sbjct: 737 CLIAENLI----KEGSLEEL-GVLFSAMEENGTAPNSRMLNALVRRFLHRGDISRAGAYL 791
Query: 427 KRAESAGWRL 436
+ + + L
Sbjct: 792 SKLDEKNFSL 801
>gi|414864901|tpg|DAA43458.1| TPA: hypothetical protein ZEAMMB73_843092 [Zea mays]
Length = 410
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 146/340 (42%), Gaps = 12/340 (3%)
Query: 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF--AEAANKHLK 188
S P A +L W+ + E Y++ I+F G+ N A +F EA L
Sbjct: 70 ASSPTKAHLILEWKLEKLLKEDIQDCEPYSRIIRFCGQTRNATFAMRVFECVEAKGIQLN 129
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T NAL+ A++ G +L+ ++ SP+ TY+ I F L M +
Sbjct: 130 T-NICNALVDAFLSAGDLLSAMTLYETMESMDACSPNSATYDAFICAFSLLGSGHAMMSW 188
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ K++ +P++ + LI G++ M + +++ M A + P++ L +
Sbjct: 189 YVAAKNAGFTPSIQAFESLITGFVRLNMLDDAKTVFEEMIALEIKPNSTILEASLEILSR 248
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-CSVTDRIKKIEALMRLIPEKEY-- 365
R + + +K DG + L +A + ++ C I ++E L+ LI + +
Sbjct: 249 KEETSR---VGDFLKRARDGN-WELNKATVVRLTRICLDGGVIDEMEQLLALIQKGTHLN 304
Query: 366 -RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
L+ +IR YA D L +ME +I ++ T + I+ YFR D+L
Sbjct: 305 SETQLHHGIIRFYANADRLADMEDAIYRMLDNGVMFTCPEDVDVIICCYFRHREFDRLDL 364
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
F+ R S ++L RS Y + Y E ++S + +M
Sbjct: 365 FLNRIRSL-FKLNRSTYDILVAGYRKFDLHERLDSTIADM 403
>gi|168011113|ref|XP_001758248.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690704|gb|EDQ77070.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 658
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 141/323 (43%), Gaps = 8/323 (2%)
Query: 169 INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+ +D A +AE +K K + T NALL AY L ++ + L +D ++A + S
Sbjct: 232 VRRLDDAEAAYAEMKSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQD-AEDAGLKLSTF 290
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
+Y LI + R +D +AAF +K N+ N F Y+ L+ Y A W + + M
Sbjct: 291 SYGLLIDAYSRAGRLDQAKAAFHNMKVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDM 350
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347
A + P+ + +L+ Y G LP+ + + + + ++I A+ + +
Sbjct: 351 YASNIKPNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVTWNSLIEAHCRAGL- 409
Query: 348 DRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRI 405
I + L++ + E+E P L+ +++ + +EM + D K V
Sbjct: 410 --ITEALDLLKQMQERECVPSLHTYNIILNALGWHNRWKEMALLL-DEMRFKGLDPNVVT 466
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+V SY + + ++K+ +S G + S+Y + YA + E+ V K ME
Sbjct: 467 YTTLVDSYGTSKRYREASEYLKQMKSQGLQPSTSVYCALANSYAKRGLCEQAMEVFKSME 526
Query: 466 NYKIDCSKKTFWIMYYAYATCGQ 488
++ + ++ A+ G+
Sbjct: 527 KDGVELNLSMLNLLINAFGVAGK 549
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 86/384 (22%), Positives = 167/384 (43%), Gaps = 30/384 (7%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKF-AGRINNVDLAADLFAEAANKHLK-TI 190
R ALE++N R G G YT + A + VD+ + + A + L+
Sbjct: 128 RLETALELMNQMR---GSGFQPDNVNYTLVFQACAKKRVGVDVISRVCANIEQEGLEMDT 184
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
YN ++ AY G DK + L + ++ P + +Y++LI + +D EAA+
Sbjct: 185 KLYNDVINAYCRAGDPDKAFQ-YMGLMQACDLVPDVRSYSSLIETLVVVRRLDDAEAAYA 243
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+K + N+ T N L++ Y + +VE++ Q + + T +Y LL+ Y+ +G
Sbjct: 244 EMKSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSRAG 303
Query: 311 NLPRMEKIYELVK-HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE---KEYR 366
L + + + +K +V F R M+ AY ++ + +RL+ + +
Sbjct: 304 RLDQAKAAFHNMKVENVPANAFIYSRLMV-AYRNA------RQWDGTIRLLKDMYASNIK 356
Query: 367 P--WLNVLLIRVYAKEDCLEEMEKSIN--DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
P ++ +LI Y K L + ++ D K V T ++ ++ R + +
Sbjct: 357 PNQFIFNILIDTYGKFGRLPQAMRTFAQMDKEGFKPDVVT---WNSLIEAHCRAGLITEA 413
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYAS---QRRVEEMESVLKEMENYKIDCSKKTFWIM 479
+ +K+ + R C H+ ++ + R +EM +L EM +D + T+ +
Sbjct: 414 LDLLKQMQE---RECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFKGLDPNVVTYTTL 470
Query: 480 YYAYATCGQRRKVNQVLGLMCKNG 503
+Y T + R+ ++ L M G
Sbjct: 471 VDSYGTSKRYREASEYLKQMKSQG 494
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 68/321 (21%), Positives = 129/321 (40%), Gaps = 21/321 (6%)
Query: 196 LLGAYMYNGLSDKCQS----LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ- 250
LL A GLS + + L D K+ +SP + YN ++ R D +E A +
Sbjct: 79 LLSAIAITGLSKESRVEEAMLLFDQLKQLGVSPGPMAYNAIVGTCAR---EDRLETALEL 135
Query: 251 --EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRG 305
+++ S P+ NY + A V+ I ++ ++ + DT Y ++
Sbjct: 136 MNQMRGSGFQPD--NVNYTLVFQACAKKRVGVDVISRVCANIEQEGLEMDTKLYNDVINA 193
Query: 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY 365
Y +G+ +K ++ + P +R+ V R+ EA + K Y
Sbjct: 194 YCRAGD---PDKAFQYMGLMQACDLVPDVRSYSSLIETLVVVRRLDDAEAAYAEMKSKSY 250
Query: 366 RPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLA 423
+ L L L+ Y ++ LE++EK + DA + ++T ++ +Y R +D+
Sbjct: 251 KINLRTLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSY-GLLIDAYSRAGRLDQAK 309
Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
+ +Y MV Y + R+ + +LK+M I ++ F I+ Y
Sbjct: 310 AAFHNMKVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFIFNILIDTY 369
Query: 484 ATCGQRRKVNQVLGLMCKNGY 504
G+ + + M K G+
Sbjct: 370 GKFGRLPQAMRTFAQMDKEGF 390
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 185 KHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238
K +K+ G Y AL +Y GL ++ +F+ ++K+ + ++ N LI+ FG
Sbjct: 488 KQMKSQGLQPSTSVYCALANSYAKRGLCEQAMEVFKSMEKDG-VELNLSMLNLLINAFG- 545
Query: 239 LLLVDHMEA--AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
+ ++EA F I + +SP+V TY L+ + A +V ++Y+ M PD
Sbjct: 546 -VAGKYVEAFSVFDYILEVGMSPDVVTYTTLMKALIKAEQLDQVPDVYEQMVRAGCTPD 603
>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 135/311 (43%), Gaps = 17/311 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T ++ A G+ D+ + F DLK P TYN+++ VFG+ + +E
Sbjct: 310 TCTTVISACGREGILDEARRFFDDLKLNG-YKPGTATYNSMLQVFGKAGVYTEALNILKE 368
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++D+N P+ TYN L+A Y+ A + + M + VMP+ TY ++ Y +G+
Sbjct: 369 MEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGD 428
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ +++ +K ++ K S ++ + KI M+L R N
Sbjct: 429 ADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNT 488
Query: 372 LLIRVYAK------EDCLEEMEKSINDAFE-HKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
+L K L EM+ N FE K + T ++S+Y RC + +A
Sbjct: 489 MLAVCGEKGKQKFVSQVLREMK---NCGFEPDKETFNT------LISAYGRCGSEVDVAK 539
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
+AG+ C + Y++ + A + + ESV+ +M ++ ++ ++ + Y+
Sbjct: 540 MYGEMVAAGFTPCITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYS 599
Query: 485 TCGQRRKVNQV 495
G R + +V
Sbjct: 600 KAGNVRGLEKV 610
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 131/317 (41%), Gaps = 13/317 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N +L G + R++K P T+NTLIS +GR + + E
Sbjct: 485 TWNTMLAVCGEKGKQKFVSQVLREMKN-CGFEPDKETFNTLISAYGRCGSEVDVAKMYGE 543
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + +P + TYN L+ W E + M+ P+ +Y LLL Y+ +GN
Sbjct: 544 MVAAGFTPCITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGN 603
Query: 312 LPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ +EK+ + DG FP L+R ++ KC ++K +E + Y+
Sbjct: 604 VRGLEKVEMEI---YDGHVFPSWMLLRTLVLTNYKCR---QLKGMERAFHQLQNNGYKLD 657
Query: 369 LNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
+ V+ ++ ++ + LE+ + + D + ++ Y R K +
Sbjct: 658 MVVINSMLSMFVRNQKLEKAHEML-DVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEML 716
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
K +++G Y++ + + + V+E +L EM + TF YA
Sbjct: 717 KDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMSCYAGN 776
Query: 487 GQRRKVNQVLGLMCKNG 503
G + ++V+ M ++G
Sbjct: 777 GLFAEADEVIRYMIEHG 793
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/349 (21%), Positives = 144/349 (41%), Gaps = 10/349 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I G+ + D A ++F + + + TYN +L S+ + D+K
Sbjct: 416 YTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRSEDMIKILCDMK 475
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P +T+NT+++V G + +E+K+ P+ T+N LI+ Y
Sbjct: 476 LNG-CPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSE 534
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRA 336
V ++Y M A P TY LL A GN E + ++ K E
Sbjct: 535 VDVAKMYGEMVAAGFTPCITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLL 594
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC--LEEMEKSINDAF 394
+ C YSK ++K+E M + + W+ +L V C L+ ME++ +
Sbjct: 595 LHC-YSKAGNVRGLEKVE--MEIYDGHVFPSWM-LLRTLVLTNYKCRQLKGMERAFHQLQ 650
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454
+ + V ++ ++S + R ++K + +G + Y+S + +YA
Sbjct: 651 NNGYKLDMV-VINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDC 709
Query: 455 EEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ E +LK+++N I ++ + + G ++ ++L M NG
Sbjct: 710 WKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANG 758
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 1/115 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ Y G K + + +D++ + ISP +V+YNT+I F + LV E
Sbjct: 695 TYNSLIDLYARVGDCWKAEEMLKDIQN-SGISPDVVSYNTVIKGFCKKGLVQEAIRILSE 753
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
+ + + P T+N ++ Y ++ + +E+ + M MP+ TY +++ GY
Sbjct: 754 MTANGVQPCPITFNTFMSCYAGNGLFAEADEVIRYMIEHGCMPNELTYKIVIDGY 808
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 76/363 (20%), Positives = 145/363 (39%), Gaps = 43/363 (11%)
Query: 163 IKFAGRINNVDLAADLF----AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218
+K GR + +A+ LF E + +K T +L AY G + +F +K
Sbjct: 209 VKMLGRESQYSIASKLFDIIPVEEYSLDVKACTT---VLHAYARTGKYKRAIEIFEKMK- 264
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHM-EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E + P++VTYN ++ V+G++ M E++ L + FT +I+ +
Sbjct: 265 ETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTTVISACGREGIL 324
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+ + +K P T TY +L+ + +G I + ++ + + +
Sbjct: 325 DEARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNEL 384
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDA 393
+ AY + D + A++ + K P N + +I Y K DA
Sbjct: 385 VAAYVRAGFHD---EGAAVIDTMASKGVMP--NAITYTTVINAYGKA----------GDA 429
Query: 394 FEHKTSVTTVRIMRCI--VSSYFRCNAVDKLANFVKRAESAGWRLC----------RSLY 441
+ ++ + C+ V +Y N V L R+E LC R +
Sbjct: 430 DKALEVFGQMKELGCVPNVCTY---NNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITW 486
Query: 442 HSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501
++ + + + + + + VL+EM+N + K+TF + AY CG V ++ G M
Sbjct: 487 NTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVA 546
Query: 502 NGY 504
G+
Sbjct: 547 AGF 549
>gi|356521277|ref|XP_003529283.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Glycine max]
Length = 379
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 1/147 (0%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
I G+ A +F E ++ +T+ + NALL AY+++ D Q LFRDL + +
Sbjct: 98 ISLYGKSGMTKHARKVFDEMPQRNCSRTVLSLNALLAAYLHSHKYDVVQELFRDLPTQLS 157
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
I P +VTYNT+I F D + +EI++ LSP+ T+N L+ G + + + E
Sbjct: 158 IKPDLVTYNTIIKAFCEKGSFDSALSVLREIEEKGLSPDSITFNTLLDGLYSKGRFEEGE 217
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAH 308
++++ M V P +Y L G A
Sbjct: 218 KVWEQMSVNNVAPGVRSYCSKLVGLAE 244
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG- 290
LIS++G+ + H F E+ N S V + N L+A Y+ + + V+E+++ +
Sbjct: 97 LISLYGKSGMTKHARKVFDEMPQRNCSRTVLSLNALLAAYLHSHKYDVVQELFRDLPTQL 156
Query: 291 PVMPDTNTYLLLLRGYAHSGNL 312
+ PD TY +++ + G+
Sbjct: 157 SIKPDLVTYNTIIKAFCEKGSF 178
>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Vitis vinifera]
Length = 641
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 2/197 (1%)
Query: 125 ELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAAN 184
+L+ QL R E + + R Q G P + I+ RI VD A +LF E
Sbjct: 207 KLLNQL-VRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFELFNEMRG 265
Query: 185 KHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
+ TYN L+ + D+ L ++L + ++SP +VTY ++IS + +L ++
Sbjct: 266 FGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGKME 325
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
F + S + PN FT+N LI G+ E +Y+ M PD T+ L+
Sbjct: 326 KASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLI 385
Query: 304 RGYAHSGNLPRMEKIYE 320
G+ +G + R K++
Sbjct: 386 DGHCRTGKVERSLKLWH 402
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 100/237 (42%), Gaps = 17/237 (7%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH--LKTIGTYN 194
A E+ N R G+G Y I R+N VD DL E +K+ + TY
Sbjct: 256 AFELFNEMR---GFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYT 312
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
+++ Y G +K LF ++ + I P+ T+N LI+ FG++ + E ++E+
Sbjct: 313 SIISGYCKLGKMEKASILFNNMIS-SGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLL 371
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
P++ T+ LI G+ GKVE +++ + A + P+ T+ +L
Sbjct: 372 LGCPPDIITFTSLIDGHCRT---GKVERSLKLWHELNARNLSPNEYTFAILTNALCKENR 428
Query: 312 LPRMEKIYELVK-HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
L +K H+ + F + +I + K D I A M EK +P
Sbjct: 429 LHEARGFLRDLKWRHIVAQPF-MYNPVIDGFCKAGNVDEANVILAEME---EKRCKP 481
>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 91/206 (44%), Gaps = 12/206 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG------TYNALLGAYMYNGLSDKCQSL 212
YT I GR +D A +LF E +K +G TYN+LL AY G +K L
Sbjct: 174 YTTMINSLGRSGRLDEAVELFEE-----MKELGRSPNSWTYNSLLKAYAREGRYEKAMCL 228
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
F ++ E I P + TYNT+I + GR L E F E++ +P+ TYN ++ Y
Sbjct: 229 FVGMEDEGCI-PDLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYS 287
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
G+ ++ + MK PD TY +LL +G+ +I+ +K
Sbjct: 288 KWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHELKAAGHSPNLV 347
Query: 333 LIRAMICAYSKCSVTDRIKKIEALMR 358
A+I Y + + ++ MR
Sbjct: 348 SFSALINMYGRLGYFEEAERAWVEMR 373
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 9/203 (4%)
Query: 127 MKQL---GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA 183
MK+L G+R R AL+V + + Y + + I GR + LA ++F +
Sbjct: 1 MKELEIRGAR-RQALQVFRFLQEHLEY--ELKEHNCVTIISILGREGKLGLAREIFEGMS 57
Query: 184 NKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG-RLLL 241
+ ++ Y ALL Y GL + +LF +K E SP+++TYNTLI+ R
Sbjct: 58 KAGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMK-EKGCSPNVLTYNTLINACTKRAYR 116
Query: 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301
+ + F+E+K + + PN TYN ++ + ++ +I + MKA +P+ +Y
Sbjct: 117 LPDLVGLFEEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISYTT 176
Query: 302 LLRGYAHSGNLPRMEKIYELVKH 324
++ SG L +++E +K
Sbjct: 177 MINSLGRSGRLDEAVELFEEMKE 199
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 1/167 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ A + L D + +++K N P++++Y T+I+ GR +D F+E
Sbjct: 138 TYNCMVNACVCLSLFDTASQILKEMKA-VNCLPNVISYTTMINSLGRSGRLDEAVELFEE 196
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K+ SPN +TYN L+ Y + K ++ M+ +PD TY ++ G
Sbjct: 197 MKELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYTYNTVIDMCGRGGL 256
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
E ++ ++ + M+ AYSK S R + + M+
Sbjct: 257 FAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLKTMK 303
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN +L AY + + L + +K+ A +P + TYN L+ G+ F E
Sbjct: 278 TYNTMLDAYSKWSRRGRARDLLKTMKR-AGCTPDLWTYNILLDAAGKAGSASEAMQIFHE 336
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+K + SPN+ +++ LI Y + + E + M+A +P+ Y L+ Y+H G
Sbjct: 337 LKAAGHSPNLVSFSALINMYGRLGYFEEAERAWVEMRATGCVPNATAYCGLMNSYSHHG 395
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 61/297 (20%), Positives = 110/297 (37%), Gaps = 43/297 (14%)
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI- 268
+ +F + K A ++PS+ Y L+S + + L+ A F+ +K+ SPNV TYN LI
Sbjct: 50 REIFEGMSK-AGVAPSVHAYTALLSGYAKQGLLKEAWALFEAMKEKGCSPNVLTYNTLIN 108
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
A A+ + +++ MK V P+ TY ++ L + +++K
Sbjct: 109 ACTKRAYRLPDLVGLFEEMKQAGVQPNDITYNCMVNACV---CLSLFDTASQILKEMKAV 165
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEM 386
P + + + + R+ + L + E P W L++ YA+E
Sbjct: 166 NCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREG---RY 222
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446
EK++ + CI Y Y++ +
Sbjct: 223 EKAM-------CLFVGMEDEGCIPDLY--------------------------TYNTVID 249
Query: 447 MYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
M E E V EM+ + T+ M AY+ +R + +L M + G
Sbjct: 250 MCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAG 306
>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Brachypodium distachyon]
Length = 821
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 102/232 (43%), Gaps = 30/232 (12%)
Query: 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAA 176
H++ +L+KQ G RP + YT + GR + A
Sbjct: 383 HADALGIFKLLKQNGLRPDVV--------------------SYTTLLNAYGRSGQPEKAR 422
Query: 177 DLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
+ F E N I +YNAL+ AY G+ + SL +++K+ I P +V+ +TL++
Sbjct: 423 EAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDG-IPPDVVSISTLLTA 481
Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
GR + ++ + K + N+ YN I Y+ +GK E+Y +M A V PD
Sbjct: 482 CGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNPD 541
Query: 296 TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR----AMICAYSK 343
TY +L+ G G K +E VD + PL + ++IC+Y K
Sbjct: 542 AVTYNILISGLCKVGKYAESLKFFE---DMVDLR-IPLTKEVYSSLICSYVK 589
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 5/189 (2%)
Query: 137 ALEVLNWRRRQAGYGTP--MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYN 194
A+E+LN R + P +T G++ + D+ K I +YN
Sbjct: 314 AIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVK--PNIVSYN 371
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
ALLGAY G+ +F+ LK+ + P +V+Y TL++ +GR + AF+E++
Sbjct: 372 ALLGAYASRGMHADALGIFKLLKQNG-LRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRK 430
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
++ PN+ +YN LI Y +A M+ + + M+ + PD + LL + +
Sbjct: 431 NSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITK 490
Query: 315 MEKIYELVK 323
++ I E K
Sbjct: 491 IDTILEAAK 499
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 13/190 (6%)
Query: 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
+Y+K I + + ++A D F T N ++ + +G + L ++
Sbjct: 275 QYSKAIAYFEMMKGANIAPDTF------------TLNIVIHCLVKDGQYGEAIELLNSMR 322
Query: 218 -KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
K P +VTY +++ + V+ +A F + + PN+ +YN L+ Y + M
Sbjct: 323 EKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGM 382
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336
I++++K + PD +Y LL Y SG + + ++ ++ + A
Sbjct: 383 HADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNA 442
Query: 337 MICAYSKCSV 346
+I AY +
Sbjct: 443 LIDAYGSAGM 452
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 87/193 (45%), Gaps = 2/193 (1%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
GR + + A ++ +K I YN+ +G+Y+ G K L+ + +N++P
Sbjct: 483 GRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYA-VMMASNVNPD 541
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
VTYN LIS ++ F+++ D + Y+ LI Y+ + E +
Sbjct: 542 AVTYNILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTFS 601
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
MK +PD TY ++ Y G+ +++ ++ + + + +++ A ++ S
Sbjct: 602 SMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRGS 661
Query: 346 VTDRIKKIEALMR 358
+R+ ++ LM+
Sbjct: 662 QHERVLQLMELMK 674
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 61/313 (19%), Positives = 117/313 (37%), Gaps = 15/313 (4%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+FR +K + N Y +I + R +D F E+++ P+ YN LI +
Sbjct: 141 VFRWMKNQENYCARNDIYGMMIRLHARHSQIDQARGLFFEMQEWRCKPDADIYNSLIHAH 200
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
A W I M + P TY ++ +GN + ++ + + + G +
Sbjct: 201 ARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTRNGVGPDL 260
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP---WLNVLLIRVYAKEDCLEEMEK 388
++ A+ S + K A ++ P LN+ +I K+ E +
Sbjct: 261 VTHNIVLSAFKNGS---QYSKAIAYFEMMKGANIAPDTFTLNI-VIHCLVKDGQYGEAIE 316
Query: 389 SINDAFEHKTSV-TTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVM 447
+N E +T V I+ SY+ C V+ + G + Y++ +
Sbjct: 317 LLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGA 376
Query: 448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN----- 502
YAS+ + + K ++ + ++ + AY GQ K + M KN
Sbjct: 377 YASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPN 436
Query: 503 --GYDVPVNAFPS 513
Y+ ++A+ S
Sbjct: 437 IVSYNALIDAYGS 449
>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
Length = 597
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 130/297 (43%), Gaps = 20/297 (6%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+FR++K P+I TY L++ F R L + E F+E++ + P+V+ YN L+ Y
Sbjct: 299 VFREMKS-VGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAY 357
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
A + EI+ +M+ PD +Y +L+ + +G E ++ +K
Sbjct: 358 SRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQ---GMR 414
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP---WLNVLLIRVYAKEDCLEEMEK 388
P +++ + S + + + + E +M + + RP LN +L Y + L++ME+
Sbjct: 415 PTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAML-NAYGRAGRLDDMER 473
Query: 389 SI------NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYH 442
+ A +T +M V++Y R +D++ + + G +
Sbjct: 474 LFAAMERGDGAIAGAPDTSTYNVM---VNAYGRAGYLDRMEAAFRSLAARGLAADVVTWT 530
Query: 443 SKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
S++ YA ++ + V +EM + T ++ A C R+V QV ++
Sbjct: 531 SRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVL---LAACSDERQVEQVKAIV 584
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 8/199 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT + R + A ++F E H + YNAL+ AY GL +F L
Sbjct: 315 YTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF-SLM 373
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ P +YN L+ FGR L EAAFQE+K + P + ++ L++ + +
Sbjct: 374 EHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNV 433
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK-----EFP 332
+ EE+ + + PDT +L Y +G L ME+++ ++ DG +
Sbjct: 434 ARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERG-DGAIAGAPDTS 492
Query: 333 LIRAMICAYSKCSVTDRIK 351
M+ AY + DR++
Sbjct: 493 TYNVMVNAYGRAGYLDRME 511
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/286 (17%), Positives = 111/286 (38%), Gaps = 2/286 (0%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ ++ P I+ YN LI +G+ + EAA+ + ++ P TY L+ Y +
Sbjct: 164 RRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQL 223
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+ E + M+ + P Y L G + + ++Y+ +K M
Sbjct: 224 HRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLM 283
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397
I Y K + ++ M+ + K L+ +A+E E+ E+ + + +
Sbjct: 284 INVYGKANQPMSSLRVFREMKSVGCKP-NICTYTALVNAFAREGLCEKAEE-VFEEMQQA 341
Query: 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
V ++ +Y R + E G R+ Y+ + + +E
Sbjct: 342 GHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEA 401
Query: 458 ESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
E+ +E++ + + K+ ++ A+A G + +V+ + K+G
Sbjct: 402 EAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSG 447
>gi|428179975|gb|EKX48844.1| hypothetical protein GUITHDRAFT_68401 [Guillardia theta CCMP2712]
Length = 396
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 1/176 (0%)
Query: 181 EAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
EA + L + Y +L+ Y G+ D+C +L ++K + + S V YNTLIS
Sbjct: 143 EAEDPSLLSSHLYASLIKGYGRKGMIDRCMALMEEMKSK-QLKVSAVPYNTLISALLESK 201
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
+D + ++++++ + P+V TY LI + +A + + ++ M+ + PDT Y
Sbjct: 202 RMDQAQKTLEQMEEAGIQPSVVTYTLLIHEFSSAGNVAQAQAAFETMERSGIFPDTGAYN 261
Query: 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
LL GYA G RM++I+ + + MI +D KK E L
Sbjct: 262 ALLDGYASLGQTARMKEIFWKLMQSANKPSIETYSIMIKCLLHSDASDDAKKSENL 317
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 118/265 (44%), Gaps = 24/265 (9%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPRL--------------ALEVL-NWRRRQAGYGTP 153
K L RR Y+++ MK G P + +E+ N + G
Sbjct: 19 KALALLRRPDQAYSYLTRMKSDGIMPNVWAYTTCIDAYCKVGDMEMAENIKSMMISSGIE 78
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTY--NALLGAYMYNGLSDKCQS 211
T +T +K + N + A + + E + I +Y + L+ +++ G ++ ++
Sbjct: 79 PTLATFTTLMKGYAKYGNHE-ALEHYLEIMQQENIMIDSYIVSILIDSFVNKGDMERAEA 137
Query: 212 LFRDLKKEANISPSIVT---YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
+ R+ KEA PS+++ Y +LI +GR ++D A +E+K L + YN LI
Sbjct: 138 ILRE--KEAE-DPSLLSSHLYASLIKGYGRKGMIDRCMALMEEMKSKQLKVSAVPYNTLI 194
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
+ + + + ++ + M+ + P TY LL+ ++ +GN+ + + +E ++
Sbjct: 195 SALLESKRMDQAQKTLEQMEEAGIQPSVVTYTLLIHEFSSAGNVAQAQAAFETMERSGIF 254
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKI 353
+ A++ Y+ T R+K+I
Sbjct: 255 PDTGAYNALLDGYASLGQTARMKEI 279
>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
Length = 642
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 75/359 (20%), Positives = 151/359 (42%), Gaps = 20/359 (5%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
+K GR V A +F +A + K T TYN+++ M G +K ++ ++ E +
Sbjct: 169 VKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD 228
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
P +TY+ LIS + +L D F E+KD+ + P Y L+ Y K
Sbjct: 229 CFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKAL 288
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-DGKEFPLIRAMICA 340
++++ MK P TY L++G +G R+++ Y K + DG L ++
Sbjct: 289 DLFEEMKRAGCSPTVYTYTELIKGLGKAG---RVDEAYGFYKDMLRDG----LTPDVVFL 341
Query: 341 YSKCSVTDRIKKIEALMRLIPEKEYRPW--------LNVLLIRVYAKEDCLEEMEKSIND 392
+ ++ ++ ++E L + E W N ++ ++ + + E+ S D
Sbjct: 342 NNLMNILGKVGRVEELTNVFSEMGM--WRCTPTVVSYNTVIKALFESKAHVSEV-SSWFD 398
Query: 393 AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452
+ + + ++ Y + N V+K ++ + G+ C + Y S + +
Sbjct: 399 KMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 458
Query: 453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
R E + + KE++ + S + + +M + CG+ + + M G V A+
Sbjct: 459 RYEAADELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAY 517
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 126/289 (43%), Gaps = 19/289 (6%)
Query: 48 RDLCAPATHTVFPTLVRLLS------ETLTYPDARVRKDLTQTVSALRD--ELLANVDDL 99
R C+P +T + L++ L E + +R LT V L + +L V +
Sbjct: 296 RAGCSPTVYT-YTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRV 354
Query: 100 DKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEY 159
+++ V E G ++R ++ ++K L EV +W + ++ E+
Sbjct: 355 EELTNVFSEMG--MWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKA--DSVSPSEF 410
Query: 160 TKGIKFAG--RINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNGLSDKCQSLFRDL 216
T I G + N V+ A L E K Y +L+ A + LF++L
Sbjct: 411 TYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKEL 470
Query: 217 KKE-ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
K+ N+S + Y +I FG+ + F E+K+ P+V+ YN L++G + A
Sbjct: 471 KENFGNVSSRV--YAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAG 528
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
M + + + M+ D N++ ++L G+A +G R +++E +KH
Sbjct: 529 MINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKH 577
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 3/183 (1%)
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
A+ L+ LG R ++ + +G ++ Y IK G+ + A DLF E
Sbjct: 446 AYCSLINALGKAKRYEAADELFKELKENFGN-VSSRVYAVMIKHFGKCGKLSEAVDLFNE 504
Query: 182 AANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
N+ + YNAL+ + G+ ++ SL R ++ E I ++N +++ F R
Sbjct: 505 MKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKME-ENGCRADINSHNIILNGFARTG 563
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
+ F+ IK S + P+ TYN L+ + A M+ + + + MK D TY
Sbjct: 564 VPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYS 623
Query: 301 LLL 303
+L
Sbjct: 624 SIL 626
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/162 (19%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT--YNALLGAYMYNGLSDK 208
G P Y I G+ + A +LF E ++ + + Y ++ + G +
Sbjct: 439 GFPPCPAAYCSLINALGKAKRYEAADELFKEL-KENFGNVSSRVYAVMIKHFGKCGKLSE 497
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
LF ++K + + P + YN L+S + +++ + ++++++ ++ ++N ++
Sbjct: 498 AVDLFNEMKNQGS-GPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIIL 556
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
G+ + + E+++ +K + PD TY LL +AH+G
Sbjct: 557 NGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAG 598
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 51/258 (19%), Positives = 105/258 (40%), Gaps = 19/258 (7%)
Query: 121 YAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFA-------GRINNVD 173
Y + EL+K LG R+ G+ M ++ T + F G++ V+
Sbjct: 304 YTYTELIKGLGKAGRV--------DEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVE 355
Query: 174 LAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
++F+E + T+ +YN ++ A + S + D K ++SPS TY+ L
Sbjct: 356 ELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSIL 415
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I + + V+ +E+ + P Y LI A + +E+++ +K
Sbjct: 416 IDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENFG 475
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352
+ Y ++++ + G L ++ +K+ G + A++ K + I +
Sbjct: 476 NVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGM---INE 532
Query: 353 IEALMRLIPEKEYRPWLN 370
+L+R + E R +N
Sbjct: 533 ANSLLRKMEENGCRADIN 550
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 117/293 (39%), Gaps = 20/293 (6%)
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
++SP++++ L+ GR +V + F + K P TYN +I M KV
Sbjct: 159 SVSPAVLS--ELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKV 216
Query: 281 EEIY-QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
E+Y +M G PDT TY L+ Y G ++++ +K + + ++
Sbjct: 217 HEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLG 276
Query: 340 AYSKCSVTDRIKKIEALMRLIPEKEYRP-----WLNVLLIRVYAKEDCLEEMEKSINDAF 394
Y K + K+E + L E + + LI+ K ++E D
Sbjct: 277 IYFK------VGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDML 330
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV---MYASQ 451
+ V + +++ + V++L N +E WR ++ V ++ S+
Sbjct: 331 RDGLTPDVV-FLNNLMNILGKVGRVEELTNVF--SEMGMWRCTPTVVSYNTVIKALFESK 387
Query: 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
V E+ S +M+ + S+ T+ I+ Y + K +L M + G+
Sbjct: 388 AHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGF 440
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 10/171 (5%)
Query: 100 DKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKE 157
D++F+ L E + R + ++K G +L A+++ N + Q
Sbjct: 464 DELFKELKENFGNVSSR-----VYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYN 518
Query: 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
G+ AG IN + E N I ++N +L + G+ + +F +K
Sbjct: 519 ALMSGMVKAGMINEANSLLRKMEE--NGCRADINSHNIILNGFARTGVPRRAIEMFETIK 576
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
+ I P VTYNTL+ F + + +E+KD + TY+ ++
Sbjct: 577 -HSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSIL 626
>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
Length = 1480
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 127/303 (41%), Gaps = 47/303 (15%)
Query: 79 KDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRP-RLA 137
KD + V L D +L D V VLD++ + FV +K +G A
Sbjct: 150 KDWRERVKYLTDRILGLTQD-QFVADVLDDRK---VQMTPTDLCFV--VKSVGQESWHRA 203
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALL 197
LEV W + Y +P + T + G+ N LA ++F A T+ YNA++
Sbjct: 204 LEVYEWLNLRHWY-SPNARMLSTI-LSVLGKANQEALAVEVFMRAEPSAGNTVQVYNAMM 261
Query: 198 GAYMYNGLSDKCQSLFRDLKKE-------------------------------------A 220
G Y G +K Q L DL +E +
Sbjct: 262 GVYARRGRFNKVQELL-DLMRERGCKPDLVSFNTLINARLKAGAMMPNLAIELLNEVRRS 320
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
+ P +TYNTLIS R ++ F +++ + P+++TYN +I+ Y + GK
Sbjct: 321 GLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKA 380
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340
E+++ +++ PD +Y LL +A GN+ ++++I+E + GK+ MI
Sbjct: 381 EQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHM 440
Query: 341 YSK 343
Y K
Sbjct: 441 YGK 443
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 88/203 (43%), Gaps = 20/203 (9%)
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
A + M++ G +P L++ W Y + E++ K I+ RI L D
Sbjct: 939 AMLSEMEEAGFKPDLSI----WNSVLKMY---VAIEDFRKTIQVYQRIKEDGLEPDE--- 988
Query: 182 AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241
TYN L+ Y + ++ SL +++ A + P + TY +L++ FG+ L
Sbjct: 989 ---------DTYNTLIVMYCRDHRPEEGFSLMHEMRV-AGLEPKLDTYKSLVASFGKQQL 1038
Query: 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301
V+ E F+E++ + Y+ ++ Y + K E ++ MMK V P T L
Sbjct: 1039 VEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHL 1098
Query: 302 LLRGYAHSGNLPRMEKIYELVKH 324
L+ Y SG EK+ +K
Sbjct: 1099 LMVSYGSSGQPQEAEKVLSNLKE 1121
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 78/348 (22%), Positives = 138/348 (39%), Gaps = 30/348 (8%)
Query: 123 FVELMKQLGSRPRL-ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
++LM++ G +P L + L R +AG P +LA +L E
Sbjct: 276 LLDLMRERGCKPDLVSFNTLINARLKAGAMMP-------------------NLAIELLNE 316
Query: 182 AANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
L+ TI TYN L+ A ++ +F D++ + P + TYN +ISV+GR
Sbjct: 317 VRRSGLRPDTI-TYNTLISACSRASNLEEAAKVFDDMEAH-HCQPDLWTYNAMISVYGRC 374
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
L E F +++ P+ +YN L+ + KV+EI++ M D TY
Sbjct: 375 GLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTY 434
Query: 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359
++ Y G ++Y ++ + +I + K T++I + +M
Sbjct: 435 NTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGK---TNKIAEAAGVMSE 491
Query: 360 IPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN 417
+ +P L LI YAK E E++ + + ++ + R N
Sbjct: 492 MLNTGVKPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHL-AYSVMLDIHLRFN 550
Query: 418 AVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+ K G L SLY + +VE++ V+++ME
Sbjct: 551 EPKRAMTLYKEMLHDGITLDHSLYELMLRTLRKVNKVEDIGRVIRDME 598
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 107/574 (18%), Positives = 212/574 (36%), Gaps = 127/574 (22%)
Query: 56 HTVFPTLVRLLSETLTYPD-ARVRKDL-------TQTVSALRDELLANVDDLDKVFRVLD 107
H+++ ++R L + D RV +D+ TQT+S++ L + D+ ++L
Sbjct: 571 HSLYELMLRTLRKVNKVEDIGRVIRDMEEICGMNTQTISSI----LVKGECYDEAAKMLR 626
Query: 108 EKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAG 167
S F + R AL++L + + + + M E + A
Sbjct: 627 RAISDHFEIDRENLLSILSSYSSSGRHAEALDLLEFLKEHSPRSSQMITEALVVMLCKAQ 686
Query: 168 RINNVDLAADLFAEAANKHLKTIGTYN---ALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
+++ A L + N+ L G++ +L+ + N L + +F D++ I
Sbjct: 687 QLD-----AALKEYSNNRELGFTGSFTMFESLIQCCLENELITEASQVFSDMRF-CGIKA 740
Query: 225 SIVTYNTLISVFGRLLLVD--HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
S Y +++ ++ ++ + H F E D L N+ Y +I Y +W K E
Sbjct: 741 SESLYESMVLLYCKMGFPETAHHLIDFAE-SDGILLNNISLYVNVIEAYGRLKLWQKAES 799
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH----------------- 325
+ ++ + D + L+ YA SG R I+ +
Sbjct: 800 VAGNLRQRCITVDRKVWNALIEAYAASGCYERARAIFNTMMRDGPSPTVDTINGLLQALI 859
Query: 326 VDGKEFPL------------------IRAMICAYSKCSVTDRIKKI-------------- 353
VDG+ L I M+ A+++ +KKI
Sbjct: 860 VDGRLDELYVVVQELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPTMH 919
Query: 354 ------------------EALMRLIPEKEYRP----WLNVL-----------LIRVYA-- 378
EA++ + E ++P W +VL I+VY
Sbjct: 920 LYRVMARLLSRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRI 979
Query: 379 KEDCLEEMEKSIND---------------AFEHKTSVTTVR----IMRCIVSSYFRCNAV 419
KED LE E + N + H+ V + + +V+S+ + V
Sbjct: 980 KEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLV 1039
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
++ + +S G +L RS YH+ M +Y + + E + M++ ++ + T ++
Sbjct: 1040 EQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHLL 1099
Query: 480 YYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
+Y + GQ ++ +VL + + G ++ + S
Sbjct: 1100 MVSYGSSGQPQEAEKVLSNLKETGSNLSTLPYSS 1133
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 83/200 (41%), Gaps = 24/200 (12%)
Query: 112 CLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN 171
C R G++ + M+ G P+L + Y + G+
Sbjct: 999 CRDHRPEEGFSLMHEMRVAGLEPKL--------------------DTYKSLVASFGKQQL 1038
Query: 172 VDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
V+ A +LF E +K K + Y+ ++ Y +G K + LF + K+A + P+I T +
Sbjct: 1039 VEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSHSKAERLF-SMMKDAGVEPTIATMH 1097
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG-KVEEIYQMMKA 289
L+ +G E +K++ + + Y+ +I Y+ + ++++ QM K
Sbjct: 1098 LLMVSYGSSGQPQEAEKVLSNLKETGSNLSTLPYSSVIDAYLRNGDYNIGIQKLIQMKKE 1157
Query: 290 GPVMPDTNTYLLLLRGYAHS 309
G + PD + +R + S
Sbjct: 1158 G-LEPDHRIWTCFIRAASLS 1176
>gi|224069806|ref|XP_002303044.1| predicted protein [Populus trichocarpa]
gi|222844770|gb|EEE82317.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 148/356 (41%), Gaps = 36/356 (10%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
ALEV R Q Y P Y K I G+ D A LF ++ T +Y A
Sbjct: 123 ALEVFELLREQLWY-RPYAGM-YVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTA 180
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI----SVFG----RLLLVD---- 243
LL AY +GL DK S+ ++K + P + TY+ LI VF ++LL D
Sbjct: 181 LLSAYGRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCLQVFAFDKVQVLLSDMESL 240
Query: 244 ----------HMEAAFQE-IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
MEA E + + P+V+T N I + + +E Y+ ++ +
Sbjct: 241 GIRPNTVTFAEMEATLMEMLSQQDCEPDVWTMNSTIRAFGGSGQMEMMENCYEKFQSAGI 300
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352
P+ T+ +LL Y +GN +M + E ++ + +I A+ + +K+
Sbjct: 301 EPNIKTFNILLDSYGKAGNYQKMSAVMEYMQRYHYSWTIVTYNVVIDAFGRAG---DLKQ 357
Query: 353 IEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV 410
+E L RL+ + +P L L+R Y +E E S+ E+ C+V
Sbjct: 358 MEYLFRLMRSERIKPSCVTLCSLVRAY-REAGKPEKIGSVLRFIENSDVTLDTVFFNCLV 416
Query: 411 SSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466
+Y R ++ ++ E G + + Y + + Y+ ++ M S K++ N
Sbjct: 417 DAYGRLECFAEMKEVLELMEEKGCKPDKVTYRTMIKAYS----IKGMTSHAKKLRN 468
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 74/320 (23%), Positives = 129/320 (40%), Gaps = 29/320 (9%)
Query: 43 NHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKV 102
+ S+T L A +F ++ E PD R T S L L V DKV
Sbjct: 175 HESYTALLSAYGRSGLFDKAFSIMEEMKNTPDCRPD---VHTYSILIKSCL-QVFAFDKV 230
Query: 103 FRVLDEKGSCLFRRHSNGYA-----FVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKE 157
+L + S R ++ +A +E++ Q P + W T
Sbjct: 231 QVLLSDMESLGIRPNTVTFAEMEATLMEMLSQQDCEPDV------W-----------TMN 273
Query: 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
+ +G++ ++ + F A + I T+N LL +Y G K ++ ++
Sbjct: 274 STIRAFGGSGQMEMMENCYEKFQSAGIE--PNIKTFNILLDSYGKAGNYQKMSAVMEYMQ 331
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + S +IVTYN +I FGR + ME F+ ++ + P+ T L+ Y A
Sbjct: 332 R-YHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMRSERIKPSCVTLCSLVRAYREAGKP 390
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
K+ + + ++ V DT + L+ Y M+++ EL++ + R M
Sbjct: 391 EKIGSVLRFIENSDVTLDTVFFNCLVDAYGRLECFAEMKEVLELMEEKGCKPDKVTYRTM 450
Query: 338 ICAYSKCSVTDRIKKIEALM 357
I AYS +T KK+ L+
Sbjct: 451 IKAYSIKGMTSHAKKLRNLL 470
>gi|297837423|ref|XP_002886593.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332434|gb|EFH62852.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 491
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 124/250 (49%), Gaps = 6/250 (2%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
KT TY +LL Y L++K + L +K E NI+PS ++YN+L++++ + + + A
Sbjct: 121 KTELTYGSLLNCYCKELLTEKAEGLLNKMK-ELNITPSSMSYNSLMTLYTKTGQTEKVPA 179
Query: 248 AFQEIKDSNLSPNVFTYN-YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
QE+K N+ P+ +TYN ++ A T + G I +M + G V PD TY + Y
Sbjct: 180 MIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIY 239
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL-IPEKEY 365
+G + EK + ++ ++F + +I Y + + +I +RL +P+
Sbjct: 240 VDAGLSQKAEKALQELEMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAMPKTSN 299
Query: 366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
+LN +I+V K + L E ++ ++ S +RI+ ++ +Y + ++K
Sbjct: 300 VAYLN--MIQVLVKLNDLPGAE-TLFKEWQANCSTYDIRIVNVLIGAYAKEGLIEKAKEL 356
Query: 426 VKRAESAGWR 435
++A G +
Sbjct: 357 KEKAPRRGGK 366
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
++ F DL + S + +TY +L++ + + LL + E ++K+ N++P+ +YN L+
Sbjct: 110 ENYFVDLPE---TSKTELTYGSLLNCYCKELLTEKAEGLLNKMKELNITPSSMSYNSLMT 166
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329
Y KV + Q +KA VMPD+ TY + +R A + ++ +E++ E + + DG+
Sbjct: 167 LYTKTGQTEKVPAMIQELKAENVMPDSYTYNVWMRALAATNDISGVERVIE--EMNRDGR 224
Query: 330 EFP 332
P
Sbjct: 225 VAP 227
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 124/285 (43%), Gaps = 21/285 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN + A + + ++ ++ ++P TY+ + S++ L E A QE
Sbjct: 195 TYNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQE 254
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV-MPDTNT--YLLLLRGYAH 308
++ N + Y +LI Y GK+ E+Y++ ++ + MP T+ YL +++
Sbjct: 255 LEMKNTQRDFTAYQFLITLYGRL---GKLTEVYRIWRSLRLAMPKTSNVAYLNMIQVLVK 311
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRLIPEKEYRP 367
+LP E +++ + + + ++ +I AY+K + ++ K++ E R + +
Sbjct: 312 LNDLPGAETLFKEWQANCSTYDIRIVNVLIGAYAKEGLIEKAKELKEKAPRRGGKANAKT 371
Query: 368 WLNVLLIRVYAKED----CLEEMEKSIN----DAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
W + + Y K LE M K+++ D + S TVR + N
Sbjct: 372 W--EIFMDYYVKSGDMAHALECMSKAVSIGKGDGGKWIPSQETVRTLMSYFEQKKDVNGA 429
Query: 420 DKLANFVKRA-ESAGWRLCRSL---YHSKMVMYASQRRVEEMESV 460
+ L +K ++ G + SL Y + + + RR +ME+V
Sbjct: 430 ENLLEILKNGTDNIGAEIFESLIRTYAAAGKSHPAMRRRLKMENV 474
>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 829
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 142/329 (43%), Gaps = 23/329 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T + ++ A G+ D+ + +LK P VTYN+++ VFG+ + + +E
Sbjct: 288 TCSTVISACGREGMLDEARKFLAELKFNG-YKPGTVTYNSMLQVFGKAGIYTEALSILKE 346
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++D+N P+ TYN L A Y+ A + + M + VMP+ TY ++ Y +G
Sbjct: 347 MEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGR 406
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+++ L+K +++ K S T+ + K+ M+L R N
Sbjct: 407 EDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNT 466
Query: 372 LLIRVYAKED-------CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
+L V ++E L EM+ N FE ++S+Y RC + A
Sbjct: 467 MLA-VCSEEGKHNYVNKVLREMK---NCGFEPDKDT-----FNTLISAYARCGSEVDSAK 517
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
+G+ C + Y++ + A + + ESV+++M ++ ++ ++ + Y+
Sbjct: 518 MYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYS 577
Query: 485 TCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
G + + +V K YD V FPS
Sbjct: 578 KAGNVKGIEKVE----KEIYDGHV--FPS 600
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ Y+ G K + + + ++ + P +V+YNT+I F R L+ E
Sbjct: 673 TYNCLMDLYVREGECWKAEEVLKGIQN-SGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSE 731
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + P + TYN ++GY ++ + E+ + M P TY +L+ GY +G
Sbjct: 732 MTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAG 790
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/302 (19%), Positives = 127/302 (42%), Gaps = 13/302 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N L+ AY G ++ ++ K + +P + TYN L++ R E+ Q+
Sbjct: 498 TFNTLISAYARCGSEVDSAKMYGEMVK-SGFTPCVTTYNALLNALARRGDWKAAESVIQD 556
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ PN +Y+ L+ Y A +E++ + + G V P L+ +
Sbjct: 557 MRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRH 616
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
L ME+ ++ ++ + + +I +M+ +++ + K ++ I E +P L
Sbjct: 617 LRGMERAFDQLQKYGYKPDLVVINSMLSMFARNKM---FSKAREMLHFIHECGLQPNLFT 673
Query: 372 --LLIRVYAKE-DC--LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L+ +Y +E +C EE+ K I ++ V+ ++ + R + + +
Sbjct: 674 YNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVS----YNTVIKGFCRKGLMQEAIGVL 729
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
+ G + Y++ + YA +E V++ M + S+ T+ I+ Y
Sbjct: 730 SEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKA 789
Query: 487 GQ 488
G+
Sbjct: 790 GK 791
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN ++ + GL + + ++ + I P+IVTYNT +S + + L D +
Sbjct: 708 SYNTVIKGFCRKGLMQEAIGVLSEMTTKG-IQPTIVTYNTFLSGYAGMELFDEANEVIRF 766
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
+ + N P+ TY L+ GY A GK EE
Sbjct: 767 MIEHNCRPSELTYKILVDGYCKA---GKYEE 794
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 70/351 (19%), Positives = 132/351 (37%), Gaps = 40/351 (11%)
Query: 163 IKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
++ GR + +A+ LF K+ + Y +L +Y G + LF +K E
Sbjct: 187 VRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMK-EIG 245
Query: 222 ISPSIVTYNTLISVFGRLLLV-DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
+ P++VTYN ++ V+G++ D + E++ L + FT + +I+ M +
Sbjct: 246 LDPTLVTYNVMLDVYGKMGRSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEA 305
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340
+ +K P T TY +L+ + +G IY + +++ M
Sbjct: 306 RKFLAELKFNGYKPGTVTYNSMLQVFGKAG-------IYT--------EALSILKEM--E 348
Query: 341 YSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSV 400
+ C D + E L Y + L+E I D K +
Sbjct: 349 DNNCP-PDSVTYNE------------------LAATYVRAGFLDEGMAVI-DTMTSKGVM 388
Query: 401 TTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESV 460
++ +Y + D + G Y+S + M + R E++ V
Sbjct: 389 PNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKV 448
Query: 461 LKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
L EM+ ++ T+ M + G+ VN+VL M G++ + F
Sbjct: 449 LCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTF 499
>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74850, chloroplastic; AltName: Full=Protein PLASTID
TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
Length = 862
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/403 (21%), Positives = 165/403 (40%), Gaps = 16/403 (3%)
Query: 92 LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPR--LALEVLNWRRRQAG 149
LL LDK V DE S R +++ L+ G R +LE+L+ + +
Sbjct: 150 LLGREGLLDKCLEVFDEMPSQGVSRSV--FSYTALINAYGRNGRYETSLELLDRMKNEKI 207
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAA--DLFAEAANKHLK-TIGTYNALLGAYMYNGLS 206
+ +T Y I R +D LFAE ++ ++ I TYN LL A GL
Sbjct: 208 SPSILT---YNTVINACAR-GGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLG 263
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
D+ + +FR + + I P + TY+ L+ FG+L ++ + E+ P++ +YN
Sbjct: 264 DEAEMVFRTMN-DGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNV 322
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
L+ Y + + ++ M+A P+ NTY +LL + SG + +++ +K
Sbjct: 323 LLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA-KEDCLEE 385
+ +I + + K++ L + E+ P + ++A + L E
Sbjct: 383 TDPDAATYNILIEVFGEGGY---FKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHE 439
Query: 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445
+ I V + + ++ ++ + ++ G +HS +
Sbjct: 440 DARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLL 499
Query: 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+A V+E E++L + + I ++ TF AY G+
Sbjct: 500 YSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGK 542
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/286 (19%), Positives = 120/286 (41%), Gaps = 11/286 (3%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
LF+ ++++ P+ Y +IS+ GR L+D F E+ +S +VF+Y LI Y
Sbjct: 127 LFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAY 186
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKE 330
+ E+ MK + P TY ++ A G + + ++ ++H +G +
Sbjct: 187 GRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRH--EGIQ 244
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEK 388
P I S C++ + E + R + + P L L+ + K L +EK
Sbjct: 245 -PDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGK---LRRLEK 300
Query: 389 SINDAFEHKT--SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446
+ E + S+ + ++ +Y + ++ + + ++AG + Y +
Sbjct: 301 VCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLN 360
Query: 447 MYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
++ R +++ + EM++ D T+ I+ + G ++V
Sbjct: 361 LFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEV 406
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+NA + AY G ++ + D++K + P T ++SV+ LVD F+E
Sbjct: 529 TFNAQIEAYKQGGKFEEAVKTYVDMEK-SRCDPDERTLEAVLSVYSFARLVDECREQFEE 587
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
+K S++ P++ Y ++A Y W V E+ + M
Sbjct: 588 MKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEM 623
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 1/125 (0%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
AN + + Y ++ A+ L ++ F + E +PSI T+++L+ F R LV
Sbjct: 450 ANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMH-EVGSNPSIETFHSLLYSFARGGLV 508
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
EA + DS + N T+N I Y + + + Y M+ PD T +
Sbjct: 509 KESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAV 568
Query: 303 LRGYA 307
L Y+
Sbjct: 569 LSVYS 573
>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 721
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN 260
+ NG+S KC+ L SP +VTY TLI + R VD +E+ L PN
Sbjct: 283 LVNGMSKKCKDL----------SPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPN 332
Query: 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ TYN LI G A W K++EI + MK G +PD T+ L+ + +GNL K++
Sbjct: 333 IVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVF 392
Query: 320 ELVK 323
E +K
Sbjct: 393 ENMK 396
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 16/158 (10%)
Query: 176 ADLFAEAAN--KHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
A LF E+ +++K IG T+N++L + G ++ + ++ ++ K + P
Sbjct: 168 AGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEMLKTYGVKPDTY 227
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TYN LI F + +VD F+E+ + P+V TYN L+ G A GK++ + ++
Sbjct: 228 TYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRA---GKIKVAHNLV 284
Query: 288 -----KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
K + PD TY L+RGY + I E
Sbjct: 285 NGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILE 322
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 7/199 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ Y D+ + ++ + P+IVTYNTLI D M+ ++
Sbjct: 300 TYTTLIRGYCRKQEVDEALDILEEMNGRG-LKPNIVTYNTLIKGLCEAQKWDKMKEILEQ 358
Query: 252 IK-DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+K D P+ T+N LI + A + ++++ MK V D+ +Y +L+R G
Sbjct: 359 MKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKG 418
Query: 311 NLPRMEKIY-ELVKHHVDGKEF---PLIRAMICAYSKCSVTDRIKKIEALMR-LIPEKEY 365
+ + E ++ EL + + + PL + C + + KK E ++R L+
Sbjct: 419 DYGKAEMLFDELFEKEILLSSYGPKPLAASYKCMFQYLCENGKTKKAERVLRQLMKRGTQ 478
Query: 366 RPWLNVLLIRVYAKEDCLE 384
P ++I + KE E
Sbjct: 479 DPLSYQIVILGHCKEGSYE 497
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMM 287
+N+LI +G L F+ +K +SP V T+N ++ + +E+Y +M+
Sbjct: 158 FNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEML 217
Query: 288 KAGPVMPDTNTYLLLLRGYAHS 309
K V PDT TY +L+RG+ +
Sbjct: 218 KTYGVKPDTYTYNILIRGFCKN 239
>gi|297839237|ref|XP_002887500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333341|gb|EFH63759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 989
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 1/161 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN ++ AY L +K S+F+ +K + P TYN+LI + + LVD + E+
Sbjct: 515 YNVMIKAYGKAKLHEKALSIFKGMKNQGTW-PDECTYNSLIQMLAGVDLVDDAQRILAEM 573
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
DS P TY LIA Y+ + ++Y+ MK V P+ Y L+ G+A SG +
Sbjct: 574 LDSGCKPGCKTYAALIASYVRLGLLSDAVDLYEAMKKTGVKPNEVVYGSLINGFAESGMV 633
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
+ ++L++ H ++ ++I AYSK + +++
Sbjct: 634 EEAIQYFKLMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRV 674
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 67/367 (18%), Positives = 146/367 (39%), Gaps = 16/367 (4%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G P+ + I G ++ A L + K + TYN LL + G +
Sbjct: 332 GVPIDTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAA 391
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+R+++K + P VT+ ++ + + +V EA E+ +++ + + ++
Sbjct: 392 LKYYRNIRK-VGLFPDTVTHRAVLHILCQRKMVAEAEAVMAEMDRNSIRIDEHSVPVIMQ 450
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329
Y+ + G+ + +++ + V+ T T ++ YA G E ++ K ++ G+
Sbjct: 451 MYVNEGLVGQAKALFERFQLDCVLSST-TLAAVMDVYAEKGLWVEAETVF-YGKRNMTGQ 508
Query: 330 EFPLIR--AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCL 383
++ MI AY K + ++ I M K W + LI++ A D +
Sbjct: 509 RNDVLEYNVMIKAYGKAKLHEKALSIFKGM-----KNQGTWPDECTYNSLIQMLAGVDLV 563
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
++ ++ + + + + +++SY R + + + + G + +Y S
Sbjct: 564 DDAQRILAEMLDSGCK-PGCKTYAALIASYVRLGLLSDAVDLYEAMKKTGVKPNEVVYGS 622
Query: 444 KMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ +A VEE K ME + + + + AY+ G + +V M +G
Sbjct: 623 LINGFAESGMVEEAIQYFKLMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSG 682
Query: 504 YDVPVNA 510
V A
Sbjct: 683 GGPDVAA 689
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%)
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
T+NTLI ++G+ ++ F E+ S + + T+N +I T + E + + M
Sbjct: 304 TFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKM 363
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+ + PDT TY +LL +A +G++ K Y ++
Sbjct: 364 EEKGISPDTKTYNILLSLHADAGDIEAALKYYRNIR 399
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 62/312 (19%), Positives = 128/312 (41%), Gaps = 35/312 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N L+ Y G + +LF ++ K + + VT+NT+I G + E+ ++
Sbjct: 304 TFNTLIDLYGKAGRLNDAANLFSEMLK-SGVPIDTVTFNTMIHTCGTHGHLSEAESLLKK 362
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ +SP+ TYN L++ + A + Y+ ++ + PDT T+ +L
Sbjct: 363 MEEKGISPDTKTYNILLSLHADAGDIEAALKYYRNIRKVGLFPDTVTHRAVLHILCQRKM 422
Query: 312 LPRMEKIYELVKHH---VDGKEFPLIRAM-----ICAYSKCSVTDRIK--------KIEA 355
+ E + + + +D P+I M + +K ++ +R + + A
Sbjct: 423 VAEAEAVMAEMDRNSIRIDEHSVPVIMQMYVNEGLVGQAK-ALFERFQLDCVLSSTTLAA 481
Query: 356 LMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR 415
+M + EK W+ + Y K + M ND E+ ++ +Y +
Sbjct: 482 VMDVYAEKGL--WVEAETV-FYGKRN----MTGQRNDVLEYNV----------MIKAYGK 524
Query: 416 CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKT 475
+K + K ++ G Y+S + M A V++ + +L EM + KT
Sbjct: 525 AKLHEKALSIFKGMKNQGTWPDECTYNSLIQMLAGVDLVDDAQRILAEMLDSGCKPGCKT 584
Query: 476 FWIMYYAYATCG 487
+ + +Y G
Sbjct: 585 YAALIASYVRLG 596
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 55/284 (19%), Positives = 114/284 (40%), Gaps = 20/284 (7%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
D+ +FR + + P+++ YN ++ GR D + + E+ + + P TY
Sbjct: 120 DRVLRVFRFFQSHQSYVPNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGM 179
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
L+ Y A + + + M PD T ++R + +SG R ++ + K
Sbjct: 180 LVDVYGKAGLVKEALLWIKHMGQRMHFPDEVTMATVVRVFKNSGEFDRADRFF---KGWC 236
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM 386
GK + + ++ + L + +L++ L +V A+ +
Sbjct: 237 AGK----VNLDDLDLDSIDDFPKNGSAQSPVNL------KQFLSMELFKVGAR----NPI 282
Query: 387 EKSINDAFEHKTSVTTVRI---MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
EKS++ A +S R+ ++ Y + ++ AN +G + +++
Sbjct: 283 EKSLHFASGSDSSPRKPRLTSTFNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNT 342
Query: 444 KMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+ + + E ES+LK+ME I KT+ I+ +A G
Sbjct: 343 MIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILLSLHADAG 386
>gi|356575482|ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Glycine max]
Length = 576
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 77/354 (21%), Positives = 150/354 (42%), Gaps = 4/354 (1%)
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDK 208
YG P + Y I + N D A ++F K T TY L+ Y G S
Sbjct: 219 YGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETYTMLINLYGKAGKSFM 278
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
LF ++ + P+I TY L++ F R L + E F++++++ L P+V+ YN L+
Sbjct: 279 ALKLFHEMMSH-DCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALM 337
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
Y A EI+ +M+ PD +Y +L+ Y +G E +++ +K
Sbjct: 338 EAYSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGIT 397
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEK 388
++ AYSK ++ ++I M K LN +L +Y + +ME+
Sbjct: 398 PTMKSHMVLLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSML-NLYGRLGQFGKMEE 456
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
+ E + V + +++ Y + ++++ + + S G + + S++ Y
Sbjct: 457 VLR-VMEKGSYVADISTYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAY 515
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502
+ ++ + + +EM + T ++ A + Q +V V+ M K+
Sbjct: 516 SKKKLYLKCLEIFEEMIDDGCYPDGGTAKVLLAACSNEDQTEQVTTVIRTMHKD 569
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/335 (22%), Positives = 146/335 (43%), Gaps = 13/335 (3%)
Query: 178 LFAEAANKHLK--------TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
L+ EA + +L+ T TY L+ AY +GL +K +++F +++ + S V Y
Sbjct: 170 LYKEAESTYLQLLEARCIPTEDTYALLIKAYCISGLLEKAEAVFAEMRNYG-LPSSAVVY 228
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
N I+ + D E F+ +K P TY LI Y A +++ M +
Sbjct: 229 NAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETYTMLINLYGKAGKSFMALKLFHEMMS 288
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
P+ TY L+ +A G + E+++E ++ + A++ AYS+
Sbjct: 289 HDCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYG 348
Query: 350 IKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVRIMRC 408
+I +LM+ + + R N+ L+ Y K ++ E D + +T T++
Sbjct: 349 AAEIFSLMQHMGCEPDRASYNI-LVDAYGKAGFQDDAEAVFKDM--KRVGITPTMKSHMV 405
Query: 409 IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK 468
++S+Y + +V+K + + +G +L + +S + +Y + +ME VL+ ME
Sbjct: 406 LLSAYSKMGSVNKCEEILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEKGS 465
Query: 469 IDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
T+ I+ Y G ++ + L+ G
Sbjct: 466 YVADISTYNILINRYGQAGFIERMEDLFQLLPSKG 500
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 125/312 (40%), Gaps = 40/312 (12%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L+ A+ L + +S + L EA P+ TY LI + L++ EA F E+
Sbjct: 158 YNLLIEAFGQKLLYKEAESTYLQLL-EARCIPTEDTYALLIKAYCISGLLEKAEAVFAEM 216
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG-N 311
++ L + YN I G M K EEI++ MK P T TY +L+ Y +G +
Sbjct: 217 RNYGLPSSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKPTTETYTMLINLYGKAGKS 276
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ +E++ H + IC Y+
Sbjct: 277 FMALKLFHEMMSHDC--------KPNICTYTA---------------------------- 300
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
L+ +A+E E+ E+ + + + V ++ +Y R A +
Sbjct: 301 -LVNAFAREGLCEKAEE-VFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIFSLMQH 358
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
G R+ Y+ + Y ++ E+V K+M+ I + K+ ++ AY+ G K
Sbjct: 359 MGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNK 418
Query: 492 VNQVLGLMCKNG 503
++L MCK+G
Sbjct: 419 CEEILNQMCKSG 430
>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
Length = 597
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 127/294 (43%), Gaps = 14/294 (4%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+FR++K P+I TY L++ F R L + E F+E++ + P+V+ YN L+ Y
Sbjct: 299 VFREMKS-VGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAY 357
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
A + EI+ +M+ PD +Y +L+ + +G E ++ +K
Sbjct: 358 SRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQ---GMR 414
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP---WLNVLLIRVYAKEDCLEEMEK 388
P +++ + S + + + + E +M + + RP LN +L Y + L++ME+
Sbjct: 415 PTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAML-NAYGRAGRLDDMER 473
Query: 389 ---SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445
++ +V++Y R +D++ + + G + S++
Sbjct: 474 LFAAMERGDGASAGAPDTSTYNVLVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRI 533
Query: 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
YA ++ + V +EM + T ++ A C R+V QV ++
Sbjct: 534 GAYARKKEYGQCLRVFEEMVDAGCYPDAGTAKVL---LAACSDERQVEQVTAIV 584
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 8/199 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT + R + A ++F E H + YNAL+ AY GL +F L
Sbjct: 315 YTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF-SLM 373
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ P +YN L+ FGR L EAAFQE+K + P + ++ L++ + +
Sbjct: 374 EHMGCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKSHMLLLSAHARSGNV 433
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK-----EFP 332
+ EE+ + + PDT +L Y +G L ME+++ ++ DG +
Sbjct: 434 ARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLFAAMERG-DGASAGAPDTS 492
Query: 333 LIRAMICAYSKCSVTDRIK 351
++ AY + DR++
Sbjct: 493 TYNVLVNAYGRAGYLDRME 511
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/286 (17%), Positives = 111/286 (38%), Gaps = 2/286 (0%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ ++ P I+ YN LI +G+ + EAA+ + ++ P TY L+ Y +
Sbjct: 164 RRSSFRPDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQL 223
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+ E + M+ + P Y L G + + ++Y+ +K M
Sbjct: 224 HRAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLM 283
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397
I Y K + ++ M+ + K L+ +A+E E+ E+ + + +
Sbjct: 284 INVYGKANQPMSSLRVFREMKSVGCKP-NICTYTALVNAFAREGLCEKAEE-VFEEMQQA 341
Query: 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
V ++ +Y R + E G R+ Y+ + + +E
Sbjct: 342 GHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAFGRAGLHQEA 401
Query: 458 ESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
E+ +E++ + + K+ ++ A+A G + +V+ + K+G
Sbjct: 402 EAAFQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSG 447
>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 642
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/359 (20%), Positives = 150/359 (41%), Gaps = 20/359 (5%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
+K GR V A +F +A + K T TYN+++ M G +K ++ ++ E +
Sbjct: 169 VKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGD 228
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
P +TY+ LIS + +L D F E+KD+ + P Y L+ Y K
Sbjct: 229 CFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKAL 288
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-DGKEFPLIRAMICA 340
++++ MK P TY L++G +G R+++ Y K + DG L ++
Sbjct: 289 DLFEEMKRAGCSPTVYTYTELIKGLGKAG---RVDEAYGFYKDMLRDG----LTPDVVFL 341
Query: 341 YSKCSVTDRIKKIEALMRLIPEKEYRPW--------LNVLLIRVYAKEDCLEEMEKSIND 392
+ ++ ++ ++E L + E W N ++ ++ + + E+ S D
Sbjct: 342 NNLMNILGKVGRVEELTNVFSEMGM--WRCTPTVVSYNTVIKALFESKAHVSEV-SSWFD 398
Query: 393 AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452
+ + + ++ Y + N V+K ++ + G+ C + Y S + +
Sbjct: 399 KMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 458
Query: 453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
R E + KE++ + S + + +M + CG+ + + M G V A+
Sbjct: 459 RYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAY 517
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 126/289 (43%), Gaps = 19/289 (6%)
Query: 48 RDLCAPATHTVFPTLVRLLS------ETLTYPDARVRKDLTQTVSALRD--ELLANVDDL 99
R C+P +T + L++ L E + +R LT V L + +L V +
Sbjct: 296 RAGCSPTVYT-YTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRV 354
Query: 100 DKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEY 159
+++ V E G ++R ++ ++K L EV +W + ++ E+
Sbjct: 355 EELTNVFSEMG--MWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKA--DSVSPSEF 410
Query: 160 TKGIKFAG--RINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNGLSDKCQSLFRDL 216
T I G + N V+ A L E K Y +L+ A + LF++L
Sbjct: 411 TYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKEL 470
Query: 217 KKE-ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
K+ N+S + Y +I FG+ + F E+K+ P+V+ YN L++G + A
Sbjct: 471 KENFGNVSSRV--YAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAG 528
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
M + + + M+ D N++ ++L G+A +G R +++E +KH
Sbjct: 529 MINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKH 577
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 3/183 (1%)
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
A+ L+ LG R ++ + +G ++ Y IK G+ + A DLF E
Sbjct: 446 AYCSLINALGKAKRYEAANELFKELKENFGN-VSSRVYAVMIKHFGKCGKLSEAVDLFNE 504
Query: 182 AANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
N+ + YNAL+ + G+ ++ SL R ++ E I ++N +++ F R
Sbjct: 505 MKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKME-ENGCRADINSHNIILNGFARTG 563
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
+ F+ IK S + P+ TYN L+ + A M+ + + + MK D TY
Sbjct: 564 VPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYS 623
Query: 301 LLL 303
+L
Sbjct: 624 SIL 626
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/162 (19%), Positives = 76/162 (46%), Gaps = 4/162 (2%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT--YNALLGAYMYNGLSDK 208
G P Y I G+ + A +LF E ++ + + Y ++ + G +
Sbjct: 439 GFPPCPAAYCSLINALGKAKRYEAANELFKEL-KENFGNVSSRVYAVMIKHFGKCGKLSE 497
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
LF ++K + + P + YN L+S + +++ + ++++++ ++ ++N ++
Sbjct: 498 AVDLFNEMKNQGS-GPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIIL 556
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
G+ + + E+++ +K + PD TY LL +AH+G
Sbjct: 557 NGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAG 598
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 51/258 (19%), Positives = 104/258 (40%), Gaps = 19/258 (7%)
Query: 121 YAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFA-------GRINNVD 173
Y + EL+K LG R+ G+ M ++ T + F G++ V+
Sbjct: 304 YTYTELIKGLGKAGRV--------DEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVE 355
Query: 174 LAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
++F+E + T+ +YN ++ A + S + D K ++SPS TY+ L
Sbjct: 356 ELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSIL 415
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I + + V+ +E+ + P Y LI A + E+++ +K
Sbjct: 416 IDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFG 475
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352
+ Y ++++ + G L ++ +K+ G + A++ K + I +
Sbjct: 476 NVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGM---INE 532
Query: 353 IEALMRLIPEKEYRPWLN 370
+L+R + E R +N
Sbjct: 533 ANSLLRKMEENGCRADIN 550
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 117/293 (39%), Gaps = 20/293 (6%)
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
++SP++++ L+ GR +V + F + K P TYN +I M KV
Sbjct: 159 SVSPAVLS--ELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKV 216
Query: 281 EEIY-QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
E+Y +M G PDT TY L+ Y G ++++ +K + + ++
Sbjct: 217 HEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLG 276
Query: 340 AYSKCSVTDRIKKIEALMRLIPEKEYRP-----WLNVLLIRVYAKEDCLEEMEKSINDAF 394
Y K + K+E + L E + + LI+ K ++E D
Sbjct: 277 IYFK------VGKVEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDML 330
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV---MYASQ 451
+ V + +++ + V++L N +E WR ++ V ++ S+
Sbjct: 331 RDGLTPDVV-FLNNLMNILGKVGRVEELTNVF--SEMGMWRCTPTVVSYNTVIKALFESK 387
Query: 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
V E+ S +M+ + S+ T+ I+ Y + K +L M + G+
Sbjct: 388 AHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGF 440
>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Glycine max]
Length = 1476
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/382 (21%), Positives = 143/382 (37%), Gaps = 76/382 (19%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE------- 219
G+ N LA ++FA A + T+ YNA++G Y NG K + L DL +E
Sbjct: 226 GKANQEALAVEIFARAESSVGDTVQVYNAMMGVYARNGRFSKVKELL-DLMRERGCVPDL 284
Query: 220 ------------------------------ANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ I P I+TYNTLIS R ++ A F
Sbjct: 285 VSFNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVF 344
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+++ P+++TYN +I+ Y K EE+++ +++ PD TY LL ++
Sbjct: 345 SDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSRE 404
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
GN ++ I E + G++ +I Y K D+ +I YR
Sbjct: 405 GNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQI-----------YR--- 450
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
+ + + +VT ++ S + + V++ AN +
Sbjct: 451 -------------------DMKSSGRNPDAVTYT----VLIDSLGKASKVEEAANVMSEM 487
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
AG + Y + + YA + EE E M I + + +M + +
Sbjct: 488 LDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEM 547
Query: 490 RKVNQVLGLMCKNGYDVPVNAF 511
+K + M + G+ P N
Sbjct: 548 KKAMGLYHEMIREGF-TPDNGL 568
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/343 (21%), Positives = 139/343 (40%), Gaps = 14/343 (4%)
Query: 173 DLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
+LA L E ++ I TYN L+ A ++ ++F D++ P + TYN
Sbjct: 303 NLALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESH-RCQPDLWTYNA 361
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
+ISV+GR E F+E++ P+ TYN L+ + KV +I + M
Sbjct: 362 MISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRG 421
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351
D TY ++ Y G + +IY +K + +I + K S +++
Sbjct: 422 FGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKAS---KVE 478
Query: 352 KIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCI 409
+ +M + + +P L+ LI YAK EE E++ N ++ + R+ +
Sbjct: 479 EAANVMSEMLDAGVKPTLHTYSALICAYAKAGKREEAEETFN--CMRRSGIKPDRLAYSV 536
Query: 410 VSSYF-RCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK 468
+ +F R N + K G+ LY M + + ++ ++++ME
Sbjct: 537 MLDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRENMWDVVDRIIRDME--- 593
Query: 469 IDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
+ S ++ G ++L + NGY++ F
Sbjct: 594 -ELSGMNPQVISSVLVKGGCYDHAAKMLKVAISNGYELDHEIF 635
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 70/329 (21%), Positives = 141/329 (42%), Gaps = 21/329 (6%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I Y ++ Y + K +SL L++ + V +N LI + + A F
Sbjct: 774 ISVYIDIVETYGKLKIWQKAESLVGSLRQRCSKMDRKV-WNALIHAYAFSGCYERARAIF 832
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ SP V + N L+ + ++ + Q ++ + ++ LL L +A +
Sbjct: 833 NTMMRDGPSPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLTLEAFAQA 892
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
GNL ++KIY +K + R M+ KC R++ +E ++ + E ++P L
Sbjct: 893 GNLFEVQKIYNGMKAAGYFPTMHVYRIMLRLLCKCK---RVRDVETMLCEMEEAGFQPDL 949
Query: 370 NVL--LIRVYAKEDCLEEME---KSINDAF--EHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
+ ++++Y + + M + I DA + + T+ IM C R ++
Sbjct: 950 QICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYC------RDRRPEEG 1003
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN--YKIDCSKKTFWIMY 480
+ + + S G Y S + + QR E+ E + +E+ + YK+D + + +M
Sbjct: 1004 FSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLD--RAFYHLMM 1061
Query: 481 YAYATCGQRRKVNQVLGLMCKNGYDVPVN 509
Y T G RK +L +M ++G + ++
Sbjct: 1062 KTYRTSGDHRKAENLLAIMKESGIEPTIS 1090
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 72/151 (47%), Gaps = 3/151 (1%)
Query: 194 NALLGAYMYNGLSD-KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
N++L Y+ G+ D K + ++A++ P TYNTLI ++ R + + ++
Sbjct: 953 NSILKLYL--GIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKM 1010
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ L P + TY LI + M+ + EE+++ +++ D Y L+++ Y SG+
Sbjct: 1011 RSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDH 1070
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+ E + ++K + ++ +Y K
Sbjct: 1071 RKAENLLAIMKESGIEPTISTMHLLMVSYGK 1101
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 83/196 (42%), Gaps = 24/196 (12%)
Query: 112 CLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN 171
C RR G++ + M+ LG P+L + Y I +
Sbjct: 995 CRDRRPEEGFSLMNKMRSLGLEPKL--------------------DTYRSLITAFNKQRM 1034
Query: 172 VDLAADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
+ A +LF E +N + Y+ ++ Y +G K ++L + KE+ I P+I T +
Sbjct: 1035 YEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLA-IMKESGIEPTISTMH 1093
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW-GKVEEIYQMMKA 289
L+ +G+ + E + ++ + + + Y+ +I Y+ + +E++ +M +A
Sbjct: 1094 LLMVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKAGIEKLTEMKEA 1153
Query: 290 GPVMPDTNTYLLLLRG 305
G + PD + +R
Sbjct: 1154 G-IEPDHRIWTCFIRA 1168
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 73/408 (17%), Positives = 156/408 (38%), Gaps = 48/408 (11%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF-AEAANKHLKTIGTYNA 195
A E+L + R A M E I + +D A + + ++ ++ Y +
Sbjct: 651 ACELLEFSREHAPNDIQMITEAL---IIILCKAKKLDAALEEYRSKGELGQFRSCTMYES 707
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD--HMEAAFQEIK 253
L+ + N L D +F D++ + S Y ++SV+ R+ L + H E
Sbjct: 708 LIQECIQNELFDVASQIFSDMRFNG-VESSECLYQGMVSVYCRMDLPETAHHLLYHAEKN 766
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
L ++ Y ++ Y +W K E + ++ D + L+ YA SG
Sbjct: 767 GIILDNDISVYIDIVETYGKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAYAFSGCYE 826
Query: 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLL 373
R I+ + DG P + ++ V R+ ++ +++ + + + + +L
Sbjct: 827 RARAIFNTMMR--DGPS-PTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSIL 883
Query: 374 --IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
+ +A+ L E++K I + + T+ + R ++ +C V + + E
Sbjct: 884 LTLEAFAQAGNLFEVQK-IYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEE 942
Query: 432 AGW----RLCRSL-------------------------------YHSKMVMYASQRRVEE 456
AG+ ++C S+ Y++ ++MY RR EE
Sbjct: 943 AGFQPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEE 1002
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
S++ +M + ++ T+ + A+ + ++ + NGY
Sbjct: 1003 GFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGY 1050
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 78/177 (44%), Gaps = 5/177 (2%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+EA P + N+++ ++ + M +Q+I+D++L P+ TYN LI Y
Sbjct: 941 EEAGFQPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRP 1000
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+ + M++ + P +TY L+ + + E+++E ++ + + M
Sbjct: 1001 EEGFSLMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLM 1060
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSIND 392
+ Y + +K E L+ ++ E P ++ LL+ Y K EE E + +
Sbjct: 1061 MKTY---RTSGDHRKAENLLAIMKESGIEPTISTMHLLMVSYGKSGQPEEAENVLKN 1114
>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 145/347 (41%), Gaps = 19/347 (5%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
++ DL+ F + +K ++ TYN ++ G + +SLF +K EA +P I
Sbjct: 33 KVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMK-EAGFTPDI 91
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTYN+LI G+L L+D F+++KD++ P+V TYN LI + K E
Sbjct: 92 VTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHE 151
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346
MKA + P+ TY + + G L E +K VD + L S
Sbjct: 152 MKANGLKPNVVTYSTFIDAFCKEGMLQ------EAIKFFVDMRRVALTPNEFTYTSLIDA 205
Query: 347 TDRIKKIEALMRLIPE-KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV-- 403
+ + ++L+ E + LNV+ C E K + F +
Sbjct: 206 NCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPN 265
Query: 404 -RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
+V + + ++ + +K + + LY + + ++ R+EE + ++
Sbjct: 266 QETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIG 325
Query: 463 EMENYKIDCSKKTFWIMYYAYATCGQRRK----VNQVLGL---MCKN 502
E++ I+ + + + AY GQ + + ++L L +CKN
Sbjct: 326 EIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKN 372
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 52/267 (19%), Positives = 106/267 (39%), Gaps = 12/267 (4%)
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
+ P + N L+ ++ D F+++ + + +VFTYN +I
Sbjct: 17 VFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMAR 76
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAY 341
++ MK PD TY L+ G+ G L I+E +K + A+I +
Sbjct: 77 SLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCF 136
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDAFEHK 397
K +R+ K + + +P NV+ I + KE L+E K D +
Sbjct: 137 CK---FERMPKAFEFLHEMKANGLKP--NVVTYSTFIDAFCKEGMLQEAIKFFVDM--RR 189
Query: 398 TSVTTVRIM-RCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
++T ++ + + + + V+ AG +L Y + + + R++E
Sbjct: 190 VALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKE 249
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAY 483
E V + M N + +++T+ + + +
Sbjct: 250 AEEVFRAMLNAGVAPNQETYTALVHGF 276
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 133/321 (41%), Gaps = 15/321 (4%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ TY+AL+ A G + K +L ++K + P+I TY I GR +D
Sbjct: 234 SMKTYSALMVALGRRGDTRKIMNLLEEMK-SIGLRPNIYTYTICIRALGRARRIDDAWGI 292
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F+E+ D P+V TY LI A K +E+Y M+A PD TY+ L+ +
Sbjct: 293 FKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGK 352
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G+L +++ + + VDG ++ I + C D + + ++ ++ K P
Sbjct: 353 VGDLETVKRFWN--EMEVDGYAPDVVTYTILIEALCKSGD-VDRAFDMLDVMTTKGIFPN 409
Query: 369 LNVL------LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
L+ L++ ++ LE +E ++ T+ + V + S A+D
Sbjct: 410 LHTYNTMICGLLKARRLDEALELLE-NMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTF 468
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482
KR C ++ + A R+ E E + ++ + T+ ++
Sbjct: 469 ETMKKRGIMPSIAAC----NASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKC 524
Query: 483 YATCGQRRKVNQVLGLMCKNG 503
Y+ GQ K Q+L M G
Sbjct: 525 YSKAGQIDKATQLLSEMISKG 545
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 8/166 (4%)
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDK 208
YG Y I G+ +D A +LF + + ++ + +Y L+ G D+
Sbjct: 930 YGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDE 989
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
F +LK + P V+YN +I+ G+ +D + F E+K+ +SP+++TYN LI
Sbjct: 990 AVQYFEELKLTG-LDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALI 1048
Query: 269 AGYMTAWMWGKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + GKV+ ++Y+ ++ + P TY L+RG++ SGN
Sbjct: 1049 ---LHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGN 1091
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 2/172 (1%)
Query: 177 DLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
D F + H T+ +YN L+ + + ++K LF D+K A P+ TYN L+
Sbjct: 784 DKFTKNLGIH-PTLESYNCLMDGLLGSNFTEKALELFEDMK-SAGTHPNNFTYNLLLDAH 841
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
G+ ++ + + E++ PN T+N +I+ + + K ++Y + +G P
Sbjct: 842 GKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTP 901
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
TY L+ G +G + KI+E + + G + +I + K D
Sbjct: 902 CTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEID 953
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 200 YMYNGLS-----DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
++ NGL D+ SLF ++K ISP + TYN LI G VD ++E++
Sbjct: 1011 FIINGLGKSRRLDEALSLFSEMKNRG-ISPDLYTYNALILHLGIAGKVDVAVKMYEELQL 1069
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
L P+VFTYN LI G+ + + +++ M P+T T+ L Y +G
Sbjct: 1070 VGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQLPNKYPRAG 1125
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 97/237 (40%), Gaps = 19/237 (8%)
Query: 91 ELLANVDDLDKVFRVLD---EKGSCLF-RRHSNGYAFVELMKQLGSRPRLALEVLNWRRR 146
E L D+D+ F +LD KG +F H+ L+K R ALE+L
Sbjct: 383 EALCKSGDVDRAFDMLDVMTTKG--IFPNLHTYNTMICGLLK--ARRLDEALELL---EN 435
Query: 147 QAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGL 205
G T Y I + G+ + A D F + + +I NA L G
Sbjct: 436 MESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGR 495
Query: 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
+ + +F DL K +SP VTYN L+ + + +D E+ P+V N
Sbjct: 496 ISEAEDIFNDLHK-CGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIIN 554
Query: 266 YLIAGYMTAWMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
LI T + G+V+ ++M +K + P TY +LL G G + + +++
Sbjct: 555 SLIN---TLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELF 608
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 2/156 (1%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
NN++ A DL+ E + T TY L+ + G S++ +F ++ + P+ V
Sbjct: 880 NNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEML-DYGCGPNSVI 938
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN LI+ FG+ +D F+++ + P++ +Y L+ + + ++ +K
Sbjct: 939 YNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELK 998
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
+ PDT +Y ++ G S L ++ +K+
Sbjct: 999 LTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKN 1034
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 124/311 (39%), Gaps = 28/311 (9%)
Query: 166 AGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
AGR VD A +F N L T+ TYN LL G K LF + E+ P
Sbjct: 563 AGR---VDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMT-ESGCPP 618
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
+ +T+N+L+ + VD F + N +P+V TYN +I G + G+++ +
Sbjct: 619 NTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIRE---GRIDYAF 675
Query: 285 ----QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV---DGKEFPLIRAM 337
QM K + PD T L+ G G + K+ H +F M
Sbjct: 676 WFFHQMKKF--LSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQF-WGELM 732
Query: 338 ICAYSKCSVTDRIKKIEALM-RLIPEKEY--RPWLNVLLIRVYAKEDCLEEMEKSINDAF 394
C ++ + + I E L+ + + ++ P + VL R A + +++ D F
Sbjct: 733 ECILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALD------AQNVFDKF 786
Query: 395 EHKTSV-TTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
+ T+ C++ N +K + +SAG Y+ + + +R
Sbjct: 787 TKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKR 846
Query: 454 VEEMESVLKEM 464
+ ++ + EM
Sbjct: 847 INKLYDLYSEM 857
>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Vitis vinifera]
Length = 755
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 135/326 (41%), Gaps = 12/326 (3%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
++ DL+ F + +K ++ TYN ++ G + +SLF +K EA +P I
Sbjct: 232 KVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMK-EAGFTPDI 290
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTYN+LI G+L L+D F+++KD++ P+V TYN LI + K E
Sbjct: 291 VTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHE 350
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346
MKA + P+ TY + + G L E +K VD + L S
Sbjct: 351 MKANGLKPNVVTYSTFIDAFCKEGMLQ------EAIKFFVDMRRVALTPNEFTYTSLIDA 404
Query: 347 TDRIKKIEALMRLIPE-KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV-- 403
+ + ++L+ E + LNV+ C E K + F +
Sbjct: 405 NCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPN 464
Query: 404 -RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
+V + + ++ + +K + + LY + + ++ R+EE + ++
Sbjct: 465 QETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIG 524
Query: 463 EMENYKIDCSKKTFWIMYYAYATCGQ 488
E++ I+ + + + AY GQ
Sbjct: 525 EIKESGINTNAVIYTTLMDAYFKSGQ 550
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 76/382 (19%), Positives = 146/382 (38%), Gaps = 34/382 (8%)
Query: 126 LMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYT--KGIKFAGRINNVDLAA------- 176
++ +L RLAL W + + G+ T E Y I F R + A
Sbjct: 104 VLVELCQDARLALRFFEWAKGRIGF--QHTSEAYCILVHILFCARFYSDANAVLKELICL 161
Query: 177 ----------DLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
DL N + G ++AL A + G+ ++ F ++K + P
Sbjct: 162 RRVLPSWDVFDLLWATRNVCVPGFGVFDALFSALIELGMLEEASECFLKMRK-FRVFPKP 220
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
+ N L+ ++ D F+++ + + +VFTYN +I ++
Sbjct: 221 RSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQ 280
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346
MK PD TY L+ G+ G L I+E +K + A+I + K
Sbjct: 281 MKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCK--- 337
Query: 347 TDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTT 402
+R+ K + + +P NV+ I + KE L+E K D + ++T
Sbjct: 338 FERMPKAFEFLHEMKANGLKP--NVVTYSTFIDAFCKEGMLQEAIKFFVDM--RRVALTP 393
Query: 403 VRIM-RCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL 461
++ + + + + V+ AG +L Y + + + R++E E V
Sbjct: 394 NEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVF 453
Query: 462 KEMENYKIDCSKKTFWIMYYAY 483
+ M N + +++T+ + + +
Sbjct: 454 RAMLNAGVAPNQETYTALVHGF 475
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y L+ AY +G + + +L ++ I+ VTY LI + LV F +
Sbjct: 538 YTTLMDAYFKSGQATEALTLLEEMLDLGLIATE-VTYCALIDGLCKSGLVQEAMHHFGRM 596
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ L PNV Y L+ G + ++++ M +MPD Y L+ G GNL
Sbjct: 597 SEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNL 656
>gi|224137224|ref|XP_002322504.1| predicted protein [Populus trichocarpa]
gi|222867134|gb|EEF04265.1| predicted protein [Populus trichocarpa]
Length = 647
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 140/301 (46%), Gaps = 10/301 (3%)
Query: 98 DLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKE 157
DL+KV ++ DE + + ++ + +L + LA + + W + +G
Sbjct: 138 DLNKVEKLFDEMIERAVKPDNVTFSTIISCARLCN---LADKAVEWFEKMPSFGLDPDDV 194
Query: 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDL 216
++ I GR+ NV+ A L+ A + + T++ L+ Y +G D C +++ ++
Sbjct: 195 TFSTMIDSYGRVGNVEKALSLYDRARTEKWRLDTTTFSTLIRIYKDSGNFDCCLNVYEEM 254
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
K + P++V YNTL+ GR + +Q+I DS LSP+ TY L+ Y A
Sbjct: 255 KA-LGVKPNLVIYNTLLDAMGRARRPWQAKKFYQDIIDSGLSPSYATYAALLRAYGRARY 313
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336
+IY+ MK + + Y +L A G + +I+E +K+ + +
Sbjct: 314 GEDTIKIYKEMKEKELSLNVLLYNTILAMCADLGFVDEAIEIFEDMKNSGISPDSWTFSS 373
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAF 394
MI S C ++ + E ++ + E ++P + VL LI+ Y K ++++ K+ N +
Sbjct: 374 MITMSSCCG---KVSEAENMLNEMFEAGFQPNIFVLTSLIQCYGKAQRIDDVVKTFNRLY 430
Query: 395 E 395
E
Sbjct: 431 E 431
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 53/281 (18%), Positives = 110/281 (39%), Gaps = 6/281 (2%)
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+V YN + V + ++ +E F E+ + + P+ T++ +I+ + K E ++
Sbjct: 123 VVVYNVTMKVLRKCRDLNKVEKLFDEMIERAVKPDNVTFSTIISCARLCNLADKAVEWFE 182
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
M + + PD T+ ++ Y GN+ + +Y+ + + +I Y
Sbjct: 183 KMPSFGLDPDDVTFSTMIDSYGRVGNVEKALSLYDRARTEKWRLDTTTFSTLIRIYKDSG 242
Query: 346 VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME--KSINDAFEHKTSVTTV 403
D + M+ + K N LL + + + + I D+ + T
Sbjct: 243 NFDCCLNVYEEMKALGVKPNLVIYNTLLDAMGRARRPWQAKKFYQDIIDSGLSPSYATYA 302
Query: 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463
++R +Y R + K + L LY++ + M A V+E + ++
Sbjct: 303 ALLR----AYGRARYGEDTIKIYKEMKEKELSLNVLLYNTILAMCADLGFVDEAIEIFED 358
Query: 464 MENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
M+N I TF M + CG+ + +L M + G+
Sbjct: 359 MKNSGISPDSWTFSSMITMSSCCGKVSEAENMLNEMFEAGF 399
>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Brachypodium distachyon]
Length = 686
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 136/324 (41%), Gaps = 11/324 (3%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
L+T YN L+ Y G + S+F+ +K I P +TYN LI+ G++ +
Sbjct: 360 LQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRL-IRPDHITYNALINGLGKVERITEAH 418
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
E++ + ++P+V T+N LI Y A K I M+ + P+ +Y ++ +
Sbjct: 419 DLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAF 478
Query: 307 AHSGNLPRMEKIYE--LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE 364
+G + I + +K + G + + A+I AY +C TD+ + M+
Sbjct: 479 CKNGKILEAVAILDDMFIKDVLPGAQ--VYNAIIDAYIECGSTDQAFMLAEKMK---SSG 533
Query: 365 YRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
P + LLI+ K+ + E E+ ++ + + + I + +R N D+
Sbjct: 534 VPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSN-TDRA 592
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482
K G + Y RV EME++ ++M + + + IM A
Sbjct: 593 LELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDA 652
Query: 483 YATCGQRRKVNQVLGLMCKNGYDV 506
YA CG+ KV + M G V
Sbjct: 653 YAKCGEESKVEALRKEMSDKGIAV 676
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 138/331 (41%), Gaps = 53/331 (16%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ- 250
+YN ++ G LF ++ ++A + P+ +TYNT+I G + D +E+ F+
Sbjct: 190 SYNVVIAGLWKAGTDCDAVKLFDEMPEKA-VVPNHITYNTMID--GHIKKGD-LESGFRL 245
Query: 251 --EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
++ L PNV TYN L++G A G+ + M + ++PD TY +L G++
Sbjct: 246 WSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSR 305
Query: 309 SGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
+G+ M ++ E VK V I AY+ CS+
Sbjct: 306 TGDSQTMLSLFEESVKKGVK----------IGAYT-CSI--------------------- 333
Query: 368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
L+ K+ + + E+ + TTV I +++ Y + ++ + +
Sbjct: 334 -----LLNGLCKDGKISKAEEVLQTLVNSGLLQTTV-IYNTLINGYCQIGDLEGAFSIFQ 387
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+ +S R Y++ + R+ E ++ EME ++ S +TF + AY G
Sbjct: 388 QMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAG 447
Query: 488 QRRKVNQVLGLMCKNG-------YDVPVNAF 511
Q K +L M + G Y VNAF
Sbjct: 448 QLEKCFIILSDMQEKGLKPNVVSYGSIVNAF 478
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 113/276 (40%), Gaps = 4/276 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I G++ + A DL E + ++ T+N L+ AY G +KC + D++
Sbjct: 401 YNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQ 460
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E + P++V+Y ++++ F + + A ++ ++ P YN +I Y+
Sbjct: 461 -EKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGST 519
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+ + + MK+ V P TY LL++G + E++ + ++++ + +
Sbjct: 520 DQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTL 579
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397
I A S TDR ++E M K P +L + EME + K
Sbjct: 580 ISACCYRSNTDRALELEKEMWKCGIKP-SPRTYRMLFSSLGGAGRVHEMENLYQQMLD-K 637
Query: 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
V I +V +Y +C K+ K G
Sbjct: 638 DVVPCSGIYNIMVDAYAKCGEESKVEALRKEMSDKG 673
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 66/349 (18%), Positives = 128/349 (36%), Gaps = 75/349 (21%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ ++ G + L+ + + + P+++TYN L+S R + A E
Sbjct: 225 TYNTMIDGHIKKGDLESGFRLWSQMLRHG-LKPNVITYNVLLSGLCRAGRMGETAAVLDE 283
Query: 252 IKDSNLSPNVFTYNYLIAGY----------------------MTAWMWG----------- 278
+ + P+ FTY+ L G+ + A+
Sbjct: 284 MASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGK 343
Query: 279 --KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336
K EE+ Q + ++ T Y L+ GY G+L I++ +K + + A
Sbjct: 344 ISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNA 403
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAK----EDC---LEEME 387
+I K +RI + L+ + + P + LI Y + E C L +M+
Sbjct: 404 LINGLGK---VERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQ 460
Query: 388 K-----------SINDAFEH----------------KTSVTTVRIMRCIVSSYFRCNAVD 420
+ SI +AF K + ++ I+ +Y C + D
Sbjct: 461 EKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTD 520
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI 469
+ ++ +S+G Y+ + Q ++ E E +L + NY +
Sbjct: 521 QAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGL 569
>gi|168045490|ref|XP_001775210.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673423|gb|EDQ59946.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 404
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/309 (26%), Positives = 123/309 (39%), Gaps = 59/309 (19%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE------------- 181
R LEV +W ++Q+ Y P ++ YT+ I F GR V A LF E
Sbjct: 27 RCTLEVFSWSKKQSWY-CPNSR-LYTRLIGFLGREGRVHNATLLFQEMLLEKCQADQYTY 84
Query: 182 -----------------AANKHLKTIG---------TYNALLGAYMYNGLSDKCQSLFRD 215
A H+K T NAL+ A + GL D+ +F D
Sbjct: 85 TALVNAYGKAKMFEEALAVFSHMKESNEPNCQPNTVTCNALIDALVKGGLYDQAIQVFFD 144
Query: 216 LKKEAN-----ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN----LSPNVFTYNY 266
++ N P+++TYN LI + L+D Q ++D N + PN TYN
Sbjct: 145 MRDGTNGLEHGCEPNVITYNVLIDALCKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNT 204
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
LI ++ K EE+ +M V PD TY L+ Y +G E ++ +K
Sbjct: 205 LINACGKGGLYEKAEELVDLMVEHGVQPDHITYTALIDAYGKAGLWENAENTFKGMKGTN 264
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP----WLNVLLIRVYAKEDC 382
+ AMI AY + + +K E + +++ RP +L+ L+ Y K
Sbjct: 265 VSVDVMAYTAMIDAYGREGL---YQKAEEMFKMMQHSGLRPNQVTYLS--LMEAYGKAGL 319
Query: 383 LEEMEKSIN 391
EE N
Sbjct: 320 PEESRNVFN 328
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 1/167 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ A GL +K + L DL E + P +TY LI +G+ L ++ E F+
Sbjct: 201 TYNTLINACGKGGLYEKAEELV-DLMVEHGVQPDHITYTALIDAYGKAGLWENAENTFKG 259
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K +N+S +V Y +I Y ++ K EE+++MM+ + P+ TYL L+ Y +G
Sbjct: 260 MKGTNVSVDVMAYTAMIDAYGREGLYQKAEEMFKMMQHSGLRPNQVTYLSLMEAYGKAGL 319
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
++ +++ + ++I AY K ++ +MR
Sbjct: 320 PEESRNVFNIMRESGYEGNVLIYSSLIDAYGKAGNYLEAARMLDMMR 366
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 12/195 (6%)
Query: 192 TYNALLGAYMYNGLSD---KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
TYN L+ A GL D K RD + ++ P+ TYNTLI+ G+ L + E
Sbjct: 162 TYNVLIDALCKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGKGGLYEKAEEL 221
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ + + P+ TY LI Y A +W E ++ MK V D Y ++ Y
Sbjct: 222 VDLMVEHGVQPDHITYTALIDAYGKAGLWENAENTFKGMKGTNVSVDVMAYTAMIDAYGR 281
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G + E+++++++H +++ AY K + + + + +MR E Y
Sbjct: 282 EGLYQKAEEMFKMMQHSGLRPNQVTYLSLMEAYGKAGLPEESRNVFNIMR---ESGYEG- 337
Query: 369 LNVL----LIRVYAK 379
NVL LI Y K
Sbjct: 338 -NVLIYSSLIDAYGK 351
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y A++ AY GL K + +F+ + + + + P+ VTY +L+ +G+ L + F +
Sbjct: 272 YTAMIDAYGREGLYQKAEEMFK-MMQHSGLRPNQVTYLSLMEAYGKAGLPEESRNVFNIM 330
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
++S NV Y+ LI Y A + + + MM+ P+ TY +L
Sbjct: 331 RESGYEGNVLIYSSLIDAYGKAGNYLEAARMLDMMRRAGCQPNLITYSAIL 381
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 62/314 (19%), Positives = 122/314 (38%), Gaps = 13/314 (4%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F KK++ P+ Y LI GR V + FQE+ + +TY L+ Y
Sbjct: 32 VFSWSKKQSWYCPNSRLYTRLIGFLGREGRVHNATLLFQEMLLEKCQADQYTYTALVNAY 91
Query: 272 MTAWMWGKVEEIYQMMKAG---PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
A M+ + ++ MK P+T T L+ G + +++ ++ +G
Sbjct: 92 GKAKMFEEALAVFSHMKESNEPNCQPNTVTCNALIDALVKGGLYDQAIQVFFDMRDGTNG 151
Query: 329 KEF---PLI---RAMICAYSKCSVTDRIKKIEALMR-LIPEKEYRPWLNV--LLIRVYAK 379
E P + +I A K + D K+ MR ++ +P LI K
Sbjct: 152 LEHGCEPNVITYNVLIDALCKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGK 211
Query: 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
E+ E+ ++ EH + ++ +Y + + N K + +
Sbjct: 212 GGLYEKAEELVDLMVEHGVQPDHI-TYTALIDAYGKAGLWENAENTFKGMKGTNVSVDVM 270
Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
Y + + Y + ++ E + K M++ + ++ T+ + AY G + V +M
Sbjct: 271 AYTAMIDAYGREGLYQKAEEMFKMMQHSGLRPNQVTYLSLMEAYGKAGLPEESRNVFNIM 330
Query: 500 CKNGYDVPVNAFPS 513
++GY+ V + S
Sbjct: 331 RESGYEGNVLIYSS 344
>gi|255660914|gb|ACU25626.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 481
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G D F D+K ISP +VTYNT+I+ R+ +D E F E
Sbjct: 152 TFNVMIWGFFLSGKMDTAMRFFEDMKSR-EISPDVVTYNTMINGCYRVKKMDEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++G
Sbjct: 211 MKGKNIEPTVVTYTTLIKGYVSVDQVHDALRLVEEMKGYGIKPNAITYSTLLPGLCNAGK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ + I E+V ++ K+ + +I + + D + +A++RL
Sbjct: 271 MSEAQSILKEMVDKYIAPKDNSIFMRLISSQCEAGNLDAAADVLKAMIRL 320
>gi|224114227|ref|XP_002316702.1| predicted protein [Populus trichocarpa]
gi|222859767|gb|EEE97314.1| predicted protein [Populus trichocarpa]
Length = 396
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 5/159 (3%)
Query: 166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
AG +N D E K +T+ ++NALLGA + + D+ + LF+ L KE I P
Sbjct: 107 AGMFDNARKVFDEMFE--RKCARTVVSFNALLGACVNSKKFDEAEGLFKGLSKELEIEPD 164
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+V+YNT++ F + +D E++ L P++ T+N L+ G+ + E I++
Sbjct: 165 LVSYNTVLKAFCEMGSMDSAATLLDEMEKKGLEPDLITFNTLLHGFYAKGRFVDGERIWE 224
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
MK V PD +Y L G RME + ++V+
Sbjct: 225 QMKEKNVEPDIRSYNAKLLGLTLE---KRMEDVVKVVEE 260
>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 830
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 141/329 (42%), Gaps = 23/329 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T + ++ A G+ D+ + +LK P V YN+++ VFG+ + + +E
Sbjct: 289 TCSTVISACGREGMLDEARKFLAELKLNG-YKPGTVMYNSMLQVFGKAGIYTEALSILKE 347
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++D+N P+ TYN L A Y+ A + + M + VMP+ TY ++ Y +G
Sbjct: 348 MEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGR 407
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+++ +K +++ K S T+ + K+ M+L R N
Sbjct: 408 EDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNT 467
Query: 372 LLIRVYAKED-------CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
+L V ++E L EM+ N FE ++SSY RC + A
Sbjct: 468 MLA-VCSEEGKHNYVNKVLREMK---NCGFEPDKDT-----FNTLISSYARCGSEVDSAK 518
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
+G+ C + Y++ + A + + ESV+++M+ ++ ++ ++ + Y+
Sbjct: 519 MYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYS 578
Query: 485 TCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
G R + +V K YD V FPS
Sbjct: 579 KAGNVRGIEKVE----KEIYDGQV--FPS 601
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ Y+ K + + + ++ P +V+YNT+I F R L+ E
Sbjct: 674 TYNCLMDLYVREDECWKAEEVLKGIQNSVP-EPDVVSYNTVIKGFCRKGLMQEAIRVLSE 732
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + P + TYN ++GY ++ + E+ + M P TY +L+ GY +G
Sbjct: 733 MTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAG 791
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/309 (19%), Positives = 130/309 (42%), Gaps = 21/309 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N L+ +Y G ++ ++ K + +P + TYN L++ E+ Q+
Sbjct: 499 TFNTLISSYARCGSEVDSAKMYGEMVK-SGFTPCVTTYNALLNALAHRGDWKAAESVIQD 557
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ PN +Y+ L+ Y A +E++ + + G V P +LLR S +
Sbjct: 558 MQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPS----WILLRTLVLSNH 613
Query: 312 LPR----MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
R ME+ ++ ++ + + +I +M+ +S+ + K ++ I E +P
Sbjct: 614 KCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKM---FSKAREMLHFIHECGLQP 670
Query: 368 WLNV--LLIRVYAKED-C--LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
L L+ +Y +ED C EE+ K I ++ V+ ++ + R + +
Sbjct: 671 NLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVS----YNTVIKGFCRKGLMQEA 726
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482
+ + G + Y++ + YA +E V++ M + S+ T+ I+
Sbjct: 727 IRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDG 786
Query: 483 YATCGQRRK 491
Y G+ +
Sbjct: 787 YCKAGKHEE 795
>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
Length = 521
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/319 (23%), Positives = 136/319 (42%), Gaps = 21/319 (6%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN ++ Y G K + L+R +++ A P+I T+ L++ F R L E F
Sbjct: 209 IDTYNRMIVIYGKAGEPSKAEMLYRSMRR-AMCPPNICTFTALMNAFARQGLYREAERYF 267
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
++++ + P+ + YN L+ Y EI+Q M+ PDT ++ +L+ Y +
Sbjct: 268 DKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRA 327
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G EKI++ ++ ++ AY++ R+++ E L+ + +P
Sbjct: 328 GLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAG---RVEEAEELVSAMERDGTKPDT 384
Query: 370 NVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
+ LI Y E+ME A K ++ + + + +Y V A F+
Sbjct: 385 LIYNSLINAYGVSGRHEDME-----ALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIP 439
Query: 428 RAESAGWRLCR-------SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480
RAE L R + + + M YA ++ + S+LK+M T +++
Sbjct: 440 RAEELFQGLARLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCRADAVTARVLF 499
Query: 481 YAYATCGQRRKVNQVLGLM 499
A C +V QV LM
Sbjct: 500 SA---CRSPEQVEQVTQLM 515
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 120/276 (43%), Gaps = 9/276 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+ L+ Y G +K + LF ++K SP + NT + V EA F++
Sbjct: 141 TFGVLINGYRLAGSFEKAEELFVQMQKRG-YSPGPLACNTFLHVLEDAKEYRRAEALFRD 199
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ PN+ TYN +I Y A K E +Y+ M+ P+ T+ L+ +A G
Sbjct: 200 LEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGL 259
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-CSVTDRIKKIEALMR--LIPEKEYRPW 368
E+ ++ ++ + A++ AYS+ S ++ + + R P+
Sbjct: 260 YREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVS--- 316
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+ +LI Y + E+ EK I + + ++ ++S+Y R V++ V
Sbjct: 317 -HNILINAYGRAGLYEDAEK-IFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSA 374
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
E G + +Y+S + Y R E+ME++L +M
Sbjct: 375 MERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKM 410
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/323 (20%), Positives = 124/323 (38%), Gaps = 55/323 (17%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P + YN LI +G+ L ++ E F ++++ PN T+ LI GY A + K EE+
Sbjct: 102 PDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLINGYRLAGSFEKAEEL 161
Query: 284 Y-QMMK----AGPVM------------------------------PDTNTYLLLLRGYAH 308
+ QM K GP+ P+ +TY ++ Y
Sbjct: 162 FVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIYGK 221
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP- 367
+G + E +Y ++ + A++ A+++ + ++ E + E +Y+P
Sbjct: 222 AGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGL---YREAERYFDKLQEFDYKPD 278
Query: 368 -WLNVLLIRVYAKE-------DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
+ L+ Y++ + + M++ N F S ++++Y R
Sbjct: 279 HYAYNALMEAYSQGGSPAGALEIFQTMQR--NGCFPDTVS------HNILINAYGRAGLY 330
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
+ K +SAG+ + YA RVEE E ++ ME + +
Sbjct: 331 EDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSL 390
Query: 480 YYAYATCGQRRKVNQVLGLMCKN 502
AY G+ + +L M K+
Sbjct: 391 INAYGVSGRHEDMEALLAKMVKS 413
>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 892
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+NA++ G+ D+ +F+++K + I P + +Y+ LI F R VD F+E+
Sbjct: 283 FNAVIYGLCQGGILDEASEVFKEMK-NSGILPDVYSYSILIDGFCRKGRVDQASEVFKEM 341
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
++S + PN+++Y+ LI G+ K E+++ MK ++PD +Y +L+ G+ G++
Sbjct: 342 RNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDM 401
Query: 313 PRMEKIYE 320
K +E
Sbjct: 402 DSAIKFWE 409
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 116/254 (45%), Gaps = 24/254 (9%)
Query: 117 HSNGYAFVELMKQL--GSRPRLALEVL------NWRRRQAGYGTPMTKEEYTKGIKFAGR 168
H N Y++ E + ++ GS P AL++L N Y T ++ FA R
Sbjct: 487 HFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISC--------FAKR 538
Query: 169 INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+N+ + A LF + + + TY L+ ++ + D LF+ +K E+ + P +
Sbjct: 539 LNS-EKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMK-ESRVYPDQI 596
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
Y +L++ F + A F E+ SPNV TY I Y+ + ++Y+ M
Sbjct: 597 AYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKM 656
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC---AYSKC 344
K V PD Y +L+ + ++G + R E +++ +K +G+ P + C +Y K
Sbjct: 657 KERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQ--EGRCTPNVVMYTCLINSYIKL 714
Query: 345 SVTDRIKKIEALMR 358
+ D+ +K+ MR
Sbjct: 715 NKRDQAEKLYEEMR 728
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 77/153 (50%), Gaps = 2/153 (1%)
Query: 172 VDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
+D A+++F E N L + +Y+ L+ + G D+ +F++++ + I P+I +Y+
Sbjct: 296 LDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMR-NSGILPNIYSYS 354
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
LI F + VD F+E+K+S + P+V++Y+ LI G+ + ++ M +
Sbjct: 355 ILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSN 414
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
P Y L++GY S K + +++
Sbjct: 415 NFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQ 447
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 2/130 (1%)
Query: 168 RINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R VD A+++F E N L I +Y+ L+ + G DK +F ++K + I P +
Sbjct: 327 RKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMK-NSGILPDV 385
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
+Y+ LI F R +D ++E+ +N SP+ F Y LI GY + + + +++
Sbjct: 386 YSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRI 445
Query: 287 MKAGPVMPDT 296
M+ + PDT
Sbjct: 446 MQKLGMWPDT 455
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%)
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
N+ P +V Y+TLIS F + L + F ++ ++ NV TY LI +++
Sbjct: 520 NVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVA 579
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340
+++ MK V PD Y L+ G+ ++G + R +++ + I
Sbjct: 580 YRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINE 639
Query: 341 YSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKT 398
Y K + ++ K+ M+ E+ P L +LI + + E ++ +
Sbjct: 640 YLKLNKNNQAHKLYEKMK---ERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGR 696
Query: 399 SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW-RLCRS 439
V + C+++SY + N D+ + + G RLC S
Sbjct: 697 CTPNVVMYTCLINSYIKLNKRDQAEKLYEEMRAKGLSRLCSS 738
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 55/96 (57%)
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
+N +I + ++D F+E+K+S + P+V++Y+ LI G+ + E+++ M+
Sbjct: 283 FNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMR 342
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
++P+ +Y +L+ G+ G + + +++E +K+
Sbjct: 343 NSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKN 378
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 166 AGRINNVDL--AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI 222
AG N ++ A LF E + + + TY + Y+ +++ L+ +K E +
Sbjct: 603 AGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMK-ERGV 661
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIK-DSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
P + Y LI+ F ++ EA F E+K + +PNV Y LI Y+ + E
Sbjct: 662 YPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRDQAE 721
Query: 282 EIYQMMKA 289
++Y+ M+A
Sbjct: 722 KLYEEMRA 729
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 38/66 (57%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y L+ A+ G ++ ++LF ++K+E +P++V Y LI+ + +L D E ++E+
Sbjct: 668 YTMLIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRDQAEKLYEEM 727
Query: 253 KDSNLS 258
+ LS
Sbjct: 728 RAKGLS 733
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 21/150 (14%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDL---KKEAN------------ISPSIVTYNTLI 233
+I +++ ++ Y G+S + L RD+ KE N + S V ++ LI
Sbjct: 84 SINSFSIIIHTYALAGMSWEVFILIRDIVTFYKEENRDAGELVSLLLDVEKSNVVFDMLI 143
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ-MMKAGPV 292
VF +++H F KD + N+ + N+L+ + V +++ ++K GP
Sbjct: 144 KVFASNSMLEHANYVFVRAKDDGIELNIMSCNFLLKCLVEDNRVDGVRLLFEVLIKFGP- 202
Query: 293 MPDTNTYLLLL----RGYAHSGNLPRMEKI 318
P+ +TY +++ RG S ++ R +I
Sbjct: 203 RPNIHTYTIMMNFFCRGVGCSVDIRRASEI 232
>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1508
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 149/346 (43%), Gaps = 54/346 (15%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
G+ N +A ++FA+A + T+ YNA++G Y NG +K +F +L +E P I
Sbjct: 241 GKANQEGIAVEIFAKAESVIADTVQVYNAMMGVYARNGNFEKVNEMF-NLMRERGCEPDI 299
Query: 227 VTYNTLI--------SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
V++NTLI +V G L ++ ++ E+ L P++ TYN LI+
Sbjct: 300 VSFNTLINAKVKSCATVSG--LAIELLD----EVGKFGLRPDIITYNTLISACSRESNLK 353
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338
+ ++ M++ PD TY ++ Y G + E ++E +K + + +++
Sbjct: 354 EAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKSNGFSPDAVTYNSLL 413
Query: 339 CAYSKCSVTDRIKKI-EALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397
A+SK T++++ I E ++++ K+ + + I +Y K H
Sbjct: 414 YAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTI--IHMYGK----------------HG 455
Query: 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
+R+ R + SS +AV Y + + ++EE
Sbjct: 456 RHDEALRLYRDMKSSGRNPDAVT--------------------YTVLIDLLGKASKIEEA 495
Query: 458 ESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
V+ EM + + + T+ + AYA G+R + + M ++G
Sbjct: 496 SKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESG 541
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 146/316 (46%), Gaps = 27/316 (8%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS---VFGRLLLVDHMEAAF 249
+NAL+ AY ++G ++ +++F + +E SP++ + N L+ V GRL +
Sbjct: 827 WNALIHAYAFSGCYERARAIFNTMMREGP-SPTVESVNGLLQALIVDGRL---SELYVVI 882
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
QE++D +L + + ++ + A +V+++Y MKA P + Y L++
Sbjct: 883 QELQDMDLKISKSSILLMLEAFAQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMI------ 936
Query: 310 GNLPRMEKIYE----LVKHHVDG--KEFPLIRAMICAYSKCSVTDRIKKIEALMR---LI 360
G L R +++ + L + G + + +++ YS + I +++ L
Sbjct: 937 GLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLA 996
Query: 361 PEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420
P++E L + R + E+ L M K + E K R +++++ + D
Sbjct: 997 PDEETYNTLITMYCRDHRPEEGLSLMHKMKSLGLEPKRDT-----YRSMIAAFSKQQLYD 1051
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480
+ + S G++L RS YH M MY + ++ E++L+ M+ I+ + T ++
Sbjct: 1052 QAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIEPNTATMHLLM 1111
Query: 481 YAYATCGQRRKVNQVL 496
+Y GQ + +++L
Sbjct: 1112 VSYGKSGQPEEADRIL 1127
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 73/162 (45%), Gaps = 1/162 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ Y +G D+ L+RD+K +P VTY LI + G+ ++ E
Sbjct: 443 TYNTIIHMYGKHGRHDEALRLYRDMKSSGR-NPDAVTYTVLIDLLGKASKIEEASKVMSE 501
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ D+ + P + TY+ LI Y + EE + M+ + D Y ++L +
Sbjct: 502 MLDAGVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNE 561
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
+ + +Y+ + + L M+ A + ++ D I+++
Sbjct: 562 IKKAAALYQEMIEAGFTPDTGLYEVMLPALVRENMGDVIERV 603
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 112/253 (44%), Gaps = 15/253 (5%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++A ++P TYNTLI+++ R + + ++K L P TY +IA + ++
Sbjct: 991 QDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLY 1050
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+ EE+++ +++ D + Y L+++ Y SG+ + E + E++K + +
Sbjct: 1051 DQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIEPNTATMHLL 1110
Query: 338 ICAYSKCSV---TDRI-KKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA 393
+ +Y K DRI K + + ++ Y ++ L + AK +E++ + A
Sbjct: 1111 MVSYGKSGQPEEADRILKNLRTMGAVLDTLPYSSVIDAYLKKGDAKAG-IEKLTEMKEAA 1169
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
E RI C + + V+ N + ++ G+ L L K S+
Sbjct: 1170 IEPDH-----RIWTCFIRAASLSGEVNDANNLLNALQAVGFDLPIRLLGEK-----SESL 1219
Query: 454 VEEMESVLKEMEN 466
V E++ L +E+
Sbjct: 1220 VSEVDQCLGRLEH 1232
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 138/324 (42%), Gaps = 25/324 (7%)
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
+L A+ G + Q ++ +K A P++ Y +I + R V + E+ ++
Sbjct: 900 MLEAFAQAGNLFEVQKVYNGMKA-AGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEA 958
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL----RGYAHSGN 311
P++ +N ++ Y + + + IYQM++ + PD TY L+ R +
Sbjct: 959 GFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEG 1018
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
L M K+ L ++ K R+MI A+SK + D+ +++ +R K R + +
Sbjct: 1019 LSLMHKMKSL---GLEPKR-DTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYH- 1073
Query: 372 LLIRVY-------AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
L++++Y E+ LE M+++ E T+ M ++ SY + ++
Sbjct: 1074 LMMKMYRTSGDHQKAENLLEIMKEA---GIEPNTAT-----MHLLMVSYGKSGQPEEADR 1125
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
+K + G L Y S + Y + + L EM+ I+ + + A +
Sbjct: 1126 ILKNLRTMGAVLDTLPYSSVIDAYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAAS 1185
Query: 485 TCGQRRKVNQVLGLMCKNGYDVPV 508
G+ N +L + G+D+P+
Sbjct: 1186 LSGEVNDANNLLNALQAVGFDLPI 1209
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 59/334 (17%), Positives = 137/334 (41%), Gaps = 21/334 (6%)
Query: 181 EAANKHLKTIGTYNALLGAYMYNGLSDKC---------QSLFRDLKKEANISPSIVTYNT 231
+AA + ++ G MY L +C LF D++ + PS Y +
Sbjct: 699 DAALEEYRSRGGLGTFRSCTMYESLIHECTKSEQFDIASQLFSDMRFNG-VEPSECLYQS 757
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL--IAGYMTAWMWGKVEEIYQMMKA 289
++SV+ R+ + + + +++ + T + + I Y MW E I + ++
Sbjct: 758 MVSVYCRIGFPETAQHLLYHAEKNDIILDNVTVHIIDIIETYGKLKMWQSAESIVENLRQ 817
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
D + L+ YA SG R I+ + +G P + ++ V R
Sbjct: 818 RCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMR--EGPS-PTVESVNGLLQALIVDGR 874
Query: 350 IKKIEALMRLIPEKEYRPWLN--VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMR 407
+ ++ +++ + + + + + +L++ +A+ L E++K N + T+ + R
Sbjct: 875 LSELYVVIQELQDMDLKISKSSILLMLEAFAQAGNLFEVQKVYN-GMKAAGYFPTMHLYR 933
Query: 408 CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467
++ R V + + AG++ +++S + +Y+S + M + + +++
Sbjct: 934 LMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDA 993
Query: 468 KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501
+ ++T+ + Y C R + L LM K
Sbjct: 994 GLAPDEETYNTLITMY--CRDHRP-EEGLSLMHK 1024
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/377 (18%), Positives = 142/377 (37%), Gaps = 44/377 (11%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
G+ D + AE + YN ++ + G +K LF+++ + I P +
Sbjct: 209 GKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRG-IPPDL 267
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTYN+++ + +D EA +++ + + PN +TYN LI GY + W + +++
Sbjct: 268 VTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 327
Query: 287 MKAGPVMPDTNT-----------------------------------YLLLLRGYAHSGN 311
M+ ++PD T Y ++L GYA G
Sbjct: 328 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 387
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR---LIPEKEYRPW 368
L M +++L+ +F +I AY+ C + D+ I MR + P+
Sbjct: 388 LVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 447
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+ L R+ +D +E+ + I+ C++ + ++ K +
Sbjct: 448 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYN-----CLIQGFCTHGSLLKAKELISE 502
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+ G L + S + RV + +++ N + + ++ Y G+
Sbjct: 503 IMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGK 562
Query: 489 RRKVNQVLGLMCKNGYD 505
K +V M G +
Sbjct: 563 MEKALRVFDAMVSAGIE 579
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN +L N D+ LF++L+ N+ +I+T NT+I + V+ + F
Sbjct: 652 ICTYNIVLRGLFKNRCFDEAIFLFKELRA-MNVKINIITLNTMIDGMFQTRRVEEAKDLF 710
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
I S L PNV TY+ +I + + + E+++ M+ P++
Sbjct: 711 ASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNS 757
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y+ L+ Y G +K +F D A I P++V Y TL++ + ++ +D + F+E
Sbjct: 549 VYSMLMDGYCLVGKMEKALRVF-DAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFRE 607
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ + P+ Y+ +I G A + + M + D TY ++LRG
Sbjct: 608 MLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRG 661
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 175 AADLFAEAANK--HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
A +L +E N HL + +++++ G Q++F DL + P V Y+ L
Sbjct: 496 AKELISEIMNNGMHLDIV-FFSSIINNLCKLGRVMDAQNIF-DLTVNVGLHPDAVVYSML 553
Query: 233 ISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQM 286
+ + LV ME A F + + + PNV Y L+ GY G+++E +++
Sbjct: 554 MDGY---CLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCK---IGRIDEGLSLFRE 607
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHV 326
M + P T Y +++ G +G +P K +E+ + +
Sbjct: 608 MLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGI 648
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
Query: 168 RINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
RI +D A + F + ++ + YN L+ + +G K + L ++ + I
Sbjct: 454 RIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNG-MHLDI 512
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
V ++++I+ +L V + F + L P+ Y+ L+ GY K ++
Sbjct: 513 VFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDA 572
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNL 312
M + + P+ Y L+ GY G +
Sbjct: 573 MVSAGIEPNVVVYCTLVNGYCKIGRI 598
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/158 (18%), Positives = 70/158 (44%), Gaps = 2/158 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+I +D LF E + +K + Y+ ++ G + + F ++ E+ I+ I
Sbjct: 594 KIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMT-ESGIAMDI 652
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TYN ++ + D F+E++ N+ N+ T N +I G + ++++
Sbjct: 653 CTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFAS 712
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
+ ++P+ TY +++ G + E ++ +++
Sbjct: 713 ISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQN 750
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/377 (18%), Positives = 142/377 (37%), Gaps = 44/377 (11%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
G+ D + AE + YN ++ + G +K LF+++ + I P +
Sbjct: 196 GKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRG-IPPDL 254
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTYN+++ + +D EA +++ + + PN +TYN LI GY + W + +++
Sbjct: 255 VTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 314
Query: 287 MKAGPVMPDTNT-----------------------------------YLLLLRGYAHSGN 311
M+ ++PD T Y ++L GYA G
Sbjct: 315 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 374
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR---LIPEKEYRPW 368
L M +++L+ +F +I AY+ C + D+ I MR + P+
Sbjct: 375 LVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 434
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+ L R+ +D +E+ + I+ C++ + ++ K +
Sbjct: 435 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYN-----CLIQGFCTHGSLLKAKELISE 489
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+ G L + S + RV + +++ N + + ++ Y G+
Sbjct: 490 IMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGK 549
Query: 489 RRKVNQVLGLMCKNGYD 505
K +V M G +
Sbjct: 550 MEKALRVFDAMVSAGIE 566
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y+ L+ Y G +K +F D A I P++V Y TL++ + ++ +D + F+E
Sbjct: 536 VYSMLMDGYCLVGKMEKALRVF-DAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFRE 594
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAW--MWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ + P+ Y+ +I G A + KV + ++M ++G M D TY ++LRG
Sbjct: 595 MLQRGIKPSTILYSIIIDGLFQAGRTVPAKV-KFHEMTESGIAM-DICTYNIVLRG 648
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN +L N D+ LF++L+ N+ +I+T NT+I + V+ + F
Sbjct: 639 ICTYNIVLRGLFKNRCFDEAIFLFKELRA-MNVKINIITLNTMIDGMFQTRRVEEAKDLF 697
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
I S L P+V TY+ +I + + + E+++ M+ P++
Sbjct: 698 ASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNS 744
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 175 AADLFAEAANK--HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
A +L +E N HL + +++++ G Q++F DL + P V Y+ L
Sbjct: 483 AKELISEIMNNGMHLDIV-FFSSIINNLCKLGRVMDAQNIF-DLTVNVGLHPDAVVYSML 540
Query: 233 ISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQM 286
+ + LV ME A F + + + PNV Y L+ GY G+++E +++
Sbjct: 541 MDGY---CLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCK---IGRIDEGLSLFRE 594
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHV 326
M + P T Y +++ G +G +P K +E+ + +
Sbjct: 595 MLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGI 635
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
Query: 168 RINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
RI +D A + F + ++ + YN L+ + +G K + L ++ + I
Sbjct: 441 RIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNG-MHLDI 499
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
V ++++I+ +L V + F + L P+ Y+ L+ GY K ++
Sbjct: 500 VFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDA 559
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNL 312
M + + P+ Y L+ GY G +
Sbjct: 560 MVSAGIEPNVVVYCTLVNGYCKIGRI 585
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/153 (18%), Positives = 66/153 (43%), Gaps = 2/153 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+I +D LF E + +K + Y+ ++ G + + F ++ E+ I+ I
Sbjct: 581 KIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMT-ESGIAMDI 639
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TYN ++ + D F+E++ N+ N+ T N +I G + ++++
Sbjct: 640 CTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFAS 699
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ ++P TY +++ G + E ++
Sbjct: 700 ISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMF 732
>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
Length = 1450
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 93/219 (42%), Gaps = 38/219 (17%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE------- 219
G+ N LA ++F A T+ YNA++G Y +G +K Q LF DL +E
Sbjct: 233 GKANQEPLAVEVFTRAEPSVENTVKVYNAMMGVYARSGKFNKVQELF-DLMRERGCEPDL 291
Query: 220 ------------------------------ANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ + P I+TYNTLIS R ++ F
Sbjct: 292 VSFNTLINARLKAGEMTPNLAIELLTEVRRSGLRPDIITYNTLISACSRASNLEEAVNVF 351
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
++ + P+++TYN +I+ Y + GK E+++ +++ PD +Y L +A
Sbjct: 352 DDMVAHHCEPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFARE 411
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
GN+ +++ I E + GK+ MI Y K D
Sbjct: 412 GNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQND 450
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 98/235 (41%), Gaps = 13/235 (5%)
Query: 167 GRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
R NV+ D+ E K TYN ++ Y G +D L+RD+K +P
Sbjct: 409 AREGNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGR-NPD 467
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
++TY LI G+ ++ E+ ++ + P + TY+ LI GY A + EE +
Sbjct: 468 VITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPTLRTYSALICGYAKAGKPVEAEETFD 527
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
M PD Y ++L + R Y+ + H E L M+ +
Sbjct: 528 CMLRSGTRPDQLAYSVMLDIHLRFNEPKRAMTFYKEMIHDGIMPEHSLYELMLRTLGNAN 587
Query: 346 VTDRIKKIEALMRLIPEKEYRPWLNVLLIR-VYAKEDCLEE----MEKSINDAFE 395
K+E + R++ + E +N I + K DC +E + ++I+D +E
Sbjct: 588 ------KVEDIGRVVRDMEEVCGMNPQAISYILVKGDCYDEAAKMLRRAISDRYE 636
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 78/345 (22%), Positives = 137/345 (39%), Gaps = 28/345 (8%)
Query: 125 ELMKQLGSRPRL-ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA 183
+LM++ G P L + L R +AG TP +LA +L E
Sbjct: 280 DLMRERGCEPDLVSFNTLINARLKAGEMTP-------------------NLAIELLTEVR 320
Query: 184 NKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
L+ I TYN L+ A ++ ++F D+ + P + TYN +ISV+GR L
Sbjct: 321 RSGLRPDIITYNTLISACSRASNLEEAVNVFDDMVAH-HCEPDLWTYNAMISVYGRCGLS 379
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
E F +++ P+ +YN + + KV++I + M D TY +
Sbjct: 380 GKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTM 439
Query: 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE 362
+ Y G ++Y +K + +I + K T++I++ +M +
Sbjct: 440 IHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGK---TNKIEEAAGMMSEMLN 496
Query: 363 KEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420
+P L LI YAK E E++ + T + ++ + R N
Sbjct: 497 TGVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQL-AYSVMLDIHLRFNEPK 555
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+ F K G SLY + + +VE++ V+++ME
Sbjct: 556 RAMTFYKEMIHDGIMPEHSLYELMLRTLGNANKVEDIGRVVRDME 600
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ Y + + L +++ + P + TY +L++ FG+ LV+ E F+E
Sbjct: 992 TYNILIVMYCRDHRPKEGLVLMDEMRT-VGLEPKLDTYKSLVASFGKQQLVEQAEELFEE 1050
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + + Y+ ++ Y + K + ++ MMK V P T LL+ Y SG
Sbjct: 1051 LQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEGVEPTIATMHLLMVSYGSSGQ 1110
Query: 312 LPRMEKIYELVKH 324
EK+ +K
Sbjct: 1111 PQEAEKVLSNLKE 1123
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K A PS+ Y + + R V +EA E++++ P++ +N ++ Y+ +
Sbjct: 912 KAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDDF 971
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
K +IYQ +K + PD +TY +L+ Y
Sbjct: 972 RKTTQIYQRIKEDGLEPDEDTYNILIVMY 1000
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 53/270 (19%), Positives = 100/270 (37%), Gaps = 44/270 (16%)
Query: 223 SPSIVTYNTLISVFGRL----LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
SP+ +T+++V G+ L V+ A ++++ V YN ++ Y + +
Sbjct: 219 SPNARMLSTILAVLGKANQEPLAVEVFTRAEPSVENT-----VKVYNAMMGVYARSGKFN 273
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338
KV+E++ +M+ PD ++ L+ +G + I L + G +R I
Sbjct: 274 KVQELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLAIELLTEVRRSG-----LRPDI 328
Query: 339 CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT 398
Y+ LI ++ LEE +D H
Sbjct: 329 ITYNT-----------------------------LISACSRASNLEEAVNVFDDMVAHHC 359
Query: 399 SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEME 458
+ ++S Y RC K ES G+ Y+S + +A + VE+++
Sbjct: 360 E-PDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVK 418
Query: 459 SVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+ +EM + T+ M + Y GQ
Sbjct: 419 DICEEMVKIGFGKDEMTYNTMIHMYGKQGQ 448
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/385 (18%), Positives = 145/385 (37%), Gaps = 44/385 (11%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
G+ D + AE + YN ++ + G +K LF+++ + I P +
Sbjct: 199 GKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRG-IPPDL 257
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTYN+++ + +D EA +++ + + PN +TYN LI GY + W + +++
Sbjct: 258 VTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 317
Query: 287 MKAGPVMPDTNT-----------------------------------YLLLLRGYAHSGN 311
M+ ++PD T Y ++L GYA G
Sbjct: 318 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 377
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR---LIPEKEYRPW 368
L M +++L+ +F +I AY+ C + D+ I MR + P+
Sbjct: 378 LVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 437
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+ L R+ +D +E+ + I+ C++ + ++ K +
Sbjct: 438 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYN-----CLIQGFCTHGSLLKAKELISE 492
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+ G L + S + RV + +++ N + + ++ Y G+
Sbjct: 493 IMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGK 552
Query: 489 RRKVNQVLGLMCKNGYDVPVNAFPS 513
K +V M G + V + +
Sbjct: 553 MEKALRVFDAMVSAGIEPNVVGYGT 577
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YN L+ Y G +K +F D A I P++V Y TL++ + ++ +D + F+E
Sbjct: 539 VYNMLMDGYCLVGKMEKALRVF-DAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFRE 597
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ + P+ Y+ +I G A + + M + D TY ++LRG
Sbjct: 598 MLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRG 651
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN +L N D+ LF++L+ N+ +I+T NT+I + V+ + F
Sbjct: 642 ICTYNIVLRGLFKNRCFDEAIFLFKELRA-MNVKINIITLNTMIDGMFQTRRVEEAKDLF 700
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
I S L P+V TY+ +I + + + E+++ M+ P++
Sbjct: 701 ASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNS 747
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 53/265 (20%), Positives = 105/265 (39%), Gaps = 38/265 (14%)
Query: 59 FPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHS 118
F +++ L + DA+ DLT V D ++ N+ ++D G CL +
Sbjct: 505 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNM--------LMD--GYCLVGKME 554
Query: 119 NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADL 178
+ M G P + GYGT + Y K I +D L
Sbjct: 555 KALRVFDAMVSAGIEPNVV-----------GYGTLVNG--YCK-------IGRIDEGLSL 594
Query: 179 FAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK----KEANISPSIVTYNTLIS 234
F E + +K + +L + + +GL + +++ +K E+ I+ I TYN ++
Sbjct: 595 FREMLQRGIKP----STILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLR 650
Query: 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294
+ D F+E++ N+ N+ T N +I G + ++++ + ++P
Sbjct: 651 GLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVP 710
Query: 295 DTNTYLLLLRGYAHSGNLPRMEKIY 319
TY +++ G + E ++
Sbjct: 711 SVVTYSIMITNLIKEGLVEEAEDMF 735
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
Query: 168 RINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
RI +D A + F + ++ + YN L+ + +G K + L ++ + I
Sbjct: 444 RIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNG-MHLDI 502
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
V ++++I+ +L V + F + L P+ YN L+ GY K ++
Sbjct: 503 VFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDA 562
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNL 312
M + + P+ Y L+ GY G +
Sbjct: 563 MVSAGIEPNVVGYGTLVNGYCKIGRI 588
>gi|15226907|ref|NP_181058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100538|sp|O82178.1|PP186_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g35130
gi|3668091|gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana]
gi|330253974|gb|AEC09068.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 591
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/338 (21%), Positives = 144/338 (42%), Gaps = 8/338 (2%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R N + A D+F K T TYN ++ Y S L+ +++ P+I
Sbjct: 241 RKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSH-QCKPNI 299
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TY L++ F R L + E F+++++ L P+V+ YN L+ Y A EI+ +
Sbjct: 300 CTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSL 359
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346
M+ PD +Y +++ Y +G E ++E +K ++ AYSK
Sbjct: 360 MQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKAR- 418
Query: 347 TDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR 404
+ K EA+++ + E P VL ++ +Y + +MEK + + E+ +
Sbjct: 419 --DVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAE-MENGPCTADIS 475
Query: 405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
+++ Y + ++++ + +R + S++ Y+ ++ + V +EM
Sbjct: 476 TYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEM 535
Query: 465 ENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502
+ T ++ A ++ Q +V VL M K
Sbjct: 536 IDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHKG 573
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 131/329 (39%), Gaps = 49/329 (14%)
Query: 122 AFVE-LMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
A++E LMK+ G+ A++V +R T E Y I G+ + ++ L+
Sbjct: 233 AYIEGLMKRKGNTEE-AIDVFQRMKRDR---CKPTTETYNLMINLYGKASKSYMSWKLYC 288
Query: 181 EAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA------------------- 220
E + K I TY AL+ A+ GL +K + +F L+++
Sbjct: 289 EMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAG 348
Query: 221 ---------------NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
P +YN ++ +GR L EA F+E+K ++P + ++
Sbjct: 349 YPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHM 408
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
L++ Y A K E I + M V PDT +L Y G +MEKI +++
Sbjct: 409 LLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENG 468
Query: 326 VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRV--YAKE--- 380
+ +I Y K +R IE L + EK +RP + R+ Y+++
Sbjct: 469 PCTADISTYNILINIYGKAGFLER---IEELFVELKEKNFRPDVVTWTSRIGAYSRKKLY 525
Query: 381 -DCLEEMEKSINDAFEHKTSVTTVRIMRC 408
CLE E+ I+ V + C
Sbjct: 526 VKCLEVFEEMIDSGCAPDGGTAKVLLSAC 554
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/336 (21%), Positives = 140/336 (41%), Gaps = 74/336 (22%)
Query: 12 QTELLLQRLQRHSSKPKTLPPLSVFT-----LTKSPNHS---------FTRDLCAPATHT 57
+ E++L +Q H PKT+ ++V+ L K ++ RD C P T T
Sbjct: 208 RAEVVLVEMQNHHVSPKTI-GVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTET 266
Query: 58 VFPTLVRLLSETLT-------YPDARVRK------DLTQTVSALRDELLANVDDLDKVFR 104
+ ++ L + Y + R + T V+A E L + +++F
Sbjct: 267 -YNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLC--EKAEEIFE 323
Query: 105 VLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIK 164
L E G + Y + LM+ ++ R YG
Sbjct: 324 QLQEDG-----LEPDVYVYNALME-------------SYSRAGYPYG------------- 352
Query: 165 FAGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNGLSDKCQSLFRDLKKEANIS 223
AA++F+ + + +YN ++ AY GL +++F ++K+ I+
Sbjct: 353 ----------AAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKR-LGIA 401
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P++ ++ L+S + + V EA +E+ ++ + P+ F N ++ Y + K+E+I
Sbjct: 402 PTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKI 461
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
M+ GP D +TY +L+ Y +G L R+E+++
Sbjct: 462 LAEMENGPCTADISTYNILINIYGKAGFLERIEELF 497
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 17/190 (8%)
Query: 117 HSNGYAFVELMKQLGSRPRLALEVL----NWRRRQAGYGTPMTKEEYTKGIK-------- 164
HS+ A E MK+LG P + +L + R + KE G++
Sbjct: 385 HSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNS 444
Query: 165 ---FAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
GR+ + AE N I TYN L+ Y G ++ + LF +LK E
Sbjct: 445 MLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELK-EK 503
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
N P +VT+ + I + R L F+E+ DS +P+ T L++ + +V
Sbjct: 504 NFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQV 563
Query: 281 EEIYQMMKAG 290
+ + M G
Sbjct: 564 TSVLRTMHKG 573
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 123/319 (38%), Gaps = 46/319 (14%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N L+ AY + +SL+ L E+ P+ TY LI + L++ E E+
Sbjct: 158 FNLLIDAYGQKFQYKEAESLYVQLL-ESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEM 216
Query: 253 KDSNLSP---NVFTYNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGY 306
++ ++SP V YN I G M G EE ++Q MK P T TY L++ Y
Sbjct: 217 QNHHVSPKTIGVTVYNAYIEGLMKRK--GNTEEAIDVFQRMKRDRCKPTTETYNLMINLY 274
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
+ K ++ K + +R+ C + C+ T
Sbjct: 275 GKAS------------KSYMSWKLYCEMRSHQCKPNICTYT------------------- 303
Query: 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L+ +A+E E+ E+ I + + V + ++ SY R A
Sbjct: 304 -----ALVNAFAREGLCEKAEE-IFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIF 357
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
+ G R+ Y+ + Y + E+V +EM+ I + K+ ++ AY+
Sbjct: 358 SLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKA 417
Query: 487 GQRRKVNQVLGLMCKNGYD 505
K ++ M +NG +
Sbjct: 418 RDVTKCEAIVKEMSENGVE 436
>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 819
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 4/163 (2%)
Query: 159 YTKGIKFAGRIN--NVDLAADLFAEAA-NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRD 215
YT + G N +D A LF + NK + YN L+ A+ G + L RD
Sbjct: 593 YTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNILIAAHSKAGNFTEAFKL-RD 651
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ +NI P+I TY+++I LV+ + F+E+++ L PNVF Y LI GY
Sbjct: 652 AMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLG 711
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
++E I Q M + + P+ TY +++ GY GN K+
Sbjct: 712 QMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKL 754
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 68/131 (51%), Gaps = 2/131 (1%)
Query: 182 AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241
++N H TI TY++++ N L ++ + +F +++ E + P++ Y LI + +L
Sbjct: 655 SSNIH-PTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEG-LMPNVFCYTALIGGYCKLGQ 712
Query: 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301
+D +E+ QE+ + + PN TY +I GY + ++ M A + PDT TY +
Sbjct: 713 MDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNEMIANGISPDTVTYTV 772
Query: 302 LLRGYAHSGNL 312
L +GY L
Sbjct: 773 LQKGYCKENEL 783
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 115/269 (42%), Gaps = 17/269 (6%)
Query: 244 HMEAAF---QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ----MMKAGPVMPDT 296
+ME F +E+ + L + +YN LI G + GK+EE ++ MMK G PDT
Sbjct: 502 NMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKS---GKIEEAFKLKEKMMKQG-FKPDT 557
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
TY L++G A G + + ++ K H M+ Y DRI +L
Sbjct: 558 YTYNFLMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCN---ADRIDNAVSL 614
Query: 357 M-RLIPEK-EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF 414
+L+ K E + +LI ++K E K + DA T+ I+
Sbjct: 615 FNKLVYNKVELSYVVYNILIAAHSKAGNFTEAFK-LRDAMRSSNIHPTIFTYSSIIHGMC 673
Query: 415 RCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKK 474
+ V++ + + G Y + + Y +++++ES+L+EM + I +K
Sbjct: 674 CNDLVEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKI 733
Query: 475 TFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
T+ IM Y G ++ ++L M NG
Sbjct: 734 TYTIMIDGYCKMGNTKEATKLLNEMIANG 762
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 2/169 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I + +D A LF + L + TYN L+ +G ++ +F+
Sbjct: 244 YATAINAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEAL-MFKGRM 302
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E ++PS+VTY L++ + D + E+ SPN F +N LI GY
Sbjct: 303 VENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNM 362
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
+ M + P+ T+ LL+G+ + + + E++ E + +V
Sbjct: 363 DDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVLEYLLSNV 411
>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 127/270 (47%), Gaps = 17/270 (6%)
Query: 173 DLAADLF--AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
D+A F A ++ I Y +L+ + D+ + +F + K++ + ++ N
Sbjct: 136 DIAFRFFWWAGKQKNYIHKIECYVSLIDVLSLSSDFDRVRCIFGEFKEKGFLM-TVFAAN 194
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
+LI FG L +V+ + ++ +K+S + P+++T+N+L+ G + + E ++++M+ G
Sbjct: 195 SLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVMECG 254
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
+ PD +Y +++GY +GN + MEK ++ K +++ + + + YS+
Sbjct: 255 KIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSE------ 308
Query: 350 IKKIEALMRLIPEKEYR-----PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR 404
++ + L E E R P L+I K+ E S+ + K V
Sbjct: 309 -GNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVE-GSSVFENMNKKGCKANVA 366
Query: 405 IMRCIVSSYFRCNAVDKLANFVKRAESAGW 434
I ++ +Y + V++ N +R + G+
Sbjct: 367 IYTALIDAYGKNGNVNEAINLFERMKGEGF 396
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 89/412 (21%), Positives = 157/412 (38%), Gaps = 59/412 (14%)
Query: 113 LFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV 172
L + N AFV + +P +A W +Q Y + E Y I ++
Sbjct: 114 LIKLSPNFVAFVLKSDAIRGKPDIAFRFFWWAGKQKNYIHKI--ECYVSLIDVLSLSSDF 171
Query: 173 DLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
D +F E K L T+ N+L+ ++ G+ ++ ++R +K E+ I PS+ T+N
Sbjct: 172 DRVRCIFGEFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMK-ESGIEPSLYTFNF 230
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L++ + ++ E F+ ++ + P+V +YN +I GY A K E + M+
Sbjct: 231 LLNGLVNSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRN 290
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP-----LIRAMICAYSK--- 343
+ PD TYL L++ GN +Y+ ++ G E P L+ +C +
Sbjct: 291 LEPDKITYLTLIQACYSEGNFDSCLHLYQEMEER--GLEIPPHAYSLVIGGLCKDGRTVE 348
Query: 344 -CSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE----MEKSINDAFEHKT 398
SV + + K + + LI Y K + E E+ + FE
Sbjct: 349 GSSVFENMNKKGCKANVA--------IYTALIDAYGKNGNVNEAINLFERMKGEGFE-PD 399
Query: 399 SVTTVRIMRCIVSS--------YF-----------------------RCNAVDKLANFVK 427
VT I+ + S YF + VD+ F +
Sbjct: 400 DVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFE 459
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
G Y++ + A ++EE + K ME D + T+ I+
Sbjct: 460 EMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTIL 511
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 85/222 (38%), Gaps = 39/222 (17%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+ Y AL+ AY NG ++ +LF +K E P VTY +++ + +D
Sbjct: 364 NVAIYTALIDAYGKNGNVNEAINLFERMKGEG-FEPDDVTYGVIVNGLCKSGRLDEAVEY 422
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F+ KD+ ++ N Y+ LI G A + E+ ++ M D+ Y L+ A
Sbjct: 423 FEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAK 482
Query: 309 SGNLP-------RMEK-------------IYELVKHHVDGKEFPLIRAMI---------- 338
SG + RMEK I L K H + + L MI
Sbjct: 483 SGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTAS 542
Query: 339 --------CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL 372
C K + +I A M +IPE + +NVL
Sbjct: 543 FRALSVGLCLSGKVARACKILDELAPMGVIPETAFEDMINVL 584
>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
Length = 838
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 132/298 (44%), Gaps = 7/298 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA--F 249
TY LL AY +GL +K +++F +++K PS V YN I G + D +A F
Sbjct: 135 TYALLLKAYCTSGLLEKAEAVFAEMRKYG-FPPSAVVYNAYID--GLMKGGDTQKAVEIF 191
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ +K P+ TY LI Y A +++ M++ P+ T+ L+ +A
Sbjct: 192 ERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFARE 251
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G + E+I+E ++ + A++ AYS+ +I +LM+ + + R
Sbjct: 252 GLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASY 311
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
N+ ++ Y + L E +++ + + T++ ++S+Y R V K V +
Sbjct: 312 NI-MVDAYGRAG-LHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQM 369
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+G + + +S + +Y + E+ME VL ME T+ I+ Y G
Sbjct: 370 HKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAG 427
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/329 (20%), Positives = 139/329 (42%), Gaps = 30/329 (9%)
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDK 208
YG P + Y I + + A ++F + + TY L+ Y S
Sbjct: 162 YGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYM 221
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
+F +++ + P+I T+ L++ F R L + E F++++++ L P+V+ YN L+
Sbjct: 222 ALKVFHEMRSQ-KCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALM 280
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
Y A EI+ +M+ PD +Y +++ Y +G + ++E++K
Sbjct: 281 EAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRL--- 337
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEM 386
P +++ + S S ++ K E ++ + + +P VL ++ +Y + E+M
Sbjct: 338 GITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKM 397
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL------ 440
E+ + A E + +++ Y R A F R E L RSL
Sbjct: 398 EEVLT-AMEKGPYPADISTYNILINIYGR-------AGFFARME----ELFRSLPARNLI 445
Query: 441 -----YHSKMVMYASQRRVEEMESVLKEM 464
+ S++ Y+ +++ V +EM
Sbjct: 446 PDVVTWTSRIGAYSRRKQYNRCLEVFEEM 474
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 122/311 (39%), Gaps = 38/311 (12%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L+ AY L K +S + +L EA P+ TY L+ + L++ EA F E+
Sbjct: 101 YNLLIDAYGQKSLYKKAESTYLELL-EARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEM 159
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ P+ YN I G M K EI++ MK P T TY +L+ Y +
Sbjct: 160 RKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKAS-- 217
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL 372
K ++ K F +R+ C + C+ T
Sbjct: 218 ----------KSYMALKVFHEMRSQKCKPNICTFT------------------------A 243
Query: 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA 432
L+ +A+E E+ E+ I + + V ++ +Y R A +
Sbjct: 244 LVNAFAREGLCEKAEE-IFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHM 302
Query: 433 GWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
G R+ Y+ + Y E+ ++V + M+ I + K+ ++ AY+ G+ K
Sbjct: 303 GCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKC 362
Query: 493 NQVLGLMCKNG 503
+++ M K+G
Sbjct: 363 EEIVNQMHKSG 373
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 22/183 (12%)
Query: 117 HSNGYAFVELMKQLGSRPRLALEVLNWRR-RQAGYGTPMTKEEYTKGIKFAGRINNVDLA 175
H + A E+MK+LG P + +L +AG + K + +++ +
Sbjct: 324 HEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAG--------KVAKCEEIVNQMHKSGIK 375
Query: 176 ADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
D F N++L Y G +K + + ++K I TYN LI++
Sbjct: 376 PDTF------------VLNSMLNLYGRLGQFEKMEEVLTAMEK-GPYPADISTYNILINI 422
Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
+GR ME F+ + NL P+V T+ I Y + + E+++ M PD
Sbjct: 423 YGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPD 482
Query: 296 TNT 298
T
Sbjct: 483 GGT 485
>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Glycine max]
Length = 892
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 147/336 (43%), Gaps = 16/336 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I + + +D A + E K + ++ +NAL+G+Y G+ + + L
Sbjct: 328 YTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVL-GLM 386
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + P++ TYN LI F R +D A ++ +S LSP+V TYN LI G +
Sbjct: 387 ESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVV 446
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH-HVDGKEFPLIRA 336
++++M PD T+ + G + +I E +K HV E A
Sbjct: 447 DSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYT-A 505
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRP---WLNVLLIRVYAKEDCLEEMEKSINDA 393
+I Y K +I+ +L + + +E P NV +I KE +++ + D
Sbjct: 506 LIDGYCK---AGKIEHAASLFKRMLAEECLPNSITFNV-MIDGLRKEGKVQDAMLLVEDM 561
Query: 394 --FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451
F+ K ++ T I+ V + D+ + R S+G++ Y + + Y SQ
Sbjct: 562 AKFDVKPTLHTYNIL---VEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQ 618
Query: 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
R+EE E ++ +++N + + ++ AY G
Sbjct: 619 GRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMG 654
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/326 (20%), Positives = 145/326 (44%), Gaps = 24/326 (7%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA--NISPSIVTYNTLISVFGRLLLVDHME 246
++ +YN LL + D+ SL++++ + ++ P+++T NT+++ + +L +
Sbjct: 150 SLTSYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNMAVAR 209
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN--TYLLLLR 304
F I P++FTY L+ GY + +++ + VMP N +Y L+
Sbjct: 210 LFFVRILRCEPGPDLFTYTSLVLGYC------RNDDVERACGVFCVMPRRNAVSYTNLIH 263
Query: 305 GYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE 364
G +G L + + ++ DG FP +R C++ + +++EAL +E
Sbjct: 264 GLCEAGKLHEALEFWARMRE--DGC-FPTVRTYTVLV--CALCESGRELEALSLFGEMRE 318
Query: 365 YRPWLNV----LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420
NV +LI KE ++E K +N+ E K +V ++ SY + ++
Sbjct: 319 RGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVE-KGVAPSVVPFNALIGSYCKRGMME 377
Query: 421 KLANFVKRAESAGWRLCRSL--YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWI 478
+ ES ++C ++ Y+ + + + ++ ++L +M K+ T+
Sbjct: 378 DAVGVLGLMESK--KVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNT 435
Query: 479 MYYAYATCGQRRKVNQVLGLMCKNGY 504
+ + G +++ LM ++G+
Sbjct: 436 LIHGLCEVGVVDSASRLFRLMIRDGF 461
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 2/155 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I + ++ AA LF A + L T+N ++ G L D+
Sbjct: 503 YTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMA 562
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K ++ P++ TYN L+ + D + S PNV TY I Y +
Sbjct: 563 K-FDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRL 621
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ EE+ +K V+ D+ Y LL+ Y G L
Sbjct: 622 EEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLL 656
>gi|224124604|ref|XP_002319373.1| predicted protein [Populus trichocarpa]
gi|222857749|gb|EEE95296.1| predicted protein [Populus trichocarpa]
Length = 810
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 132/297 (44%), Gaps = 12/297 (4%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
K + YN ++ AY L DK SLF+ ++ P VTYN+LI +F L+D
Sbjct: 340 KGVLEYNVMVKAYGKAKLYDKAFSLFKGMRNHGTW-PDEVTYNSLIQMFSGGDLMDQARD 398
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
E++++ P T++ ++A Y ++YQ M V P+ Y L+ G+A
Sbjct: 399 LLDEMQEAGFKPQCLTFSAVMACYARLGQLSDAVDVYQEMVKAGVKPNEVVYGSLINGFA 458
Query: 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
GN+ K + +++ ++ ++I YSK D K + M+ + E P
Sbjct: 459 EVGNVEEALKYFRMMEESGIPANQIVLTSLIKVYSKLGCFDGAKHLYKKMK---DLEGGP 515
Query: 368 WL--NVLLIRVYAKEDCLEEMEKSINDAFEHKTS--VTTVRIMRCIVSSYFRCNAVDKLA 423
+ + +I +YA + E E + E+ + V+ +M S A+D +A
Sbjct: 516 DIIASNSMISLYADLGMISEAELVFKNLRENGQADGVSFATMMYLYKSMGMLDEAID-IA 574
Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480
+K +S R C S Y+ M YA+ ++ E +L EM K+ TF I++
Sbjct: 575 EEMK--QSGLLRDCVS-YNKVMACYATNGQLRECAELLHEMIGQKLLPDGGTFKILF 628
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/330 (20%), Positives = 127/330 (38%), Gaps = 16/330 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ Y G +F ++ K + ++ +T+NT+I G L+ E+ +
Sbjct: 134 TYNTLIDLYGKAGRLKDAAEVFSEMLK-SGVAMDTITFNTMIFTCGSHGLLSEAESLLDK 192
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ +SP+ TYN ++ Y A E Y ++ ++PD ++ +L
Sbjct: 193 MEERRISPDTRTYNIFLSLYADAGNINAALECYWKIRNVGLVPDIVSHRTILHILCGRNM 252
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ +E + E +K + + +I Y + DR + L + + + +
Sbjct: 253 VREVEAVIEEMKKSSQKIDVHSVPGIIKMYINEGLHDRANNL--LDKCQFDVGFSSKVRA 310
Query: 372 LLIRVYAKEDCLEEMEKSI---NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+I YA+ E E D + V +M V +Y + DK + K
Sbjct: 311 AIIDAYAERGLWAEAEAVFYGKRDLLGPEKGVLEYNVM---VKAYGKAKLYDKAFSLFKG 367
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+ G Y+S + M++ +++ +L EM+ TF + YA GQ
Sbjct: 368 MRNHGTWPDEVTYNSLIQMFSGGDLMDQARDLLDEMQEAGFKPQCLTFSAVMACYARLGQ 427
Query: 489 RRKVNQVLGLMCKNG-------YDVPVNAF 511
V M K G Y +N F
Sbjct: 428 LSDAVDVYQEMVKAGVKPNEVVYGSLINGF 457
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 130/310 (41%), Gaps = 19/310 (6%)
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
A++ AY GL + +++F + ++ YN ++ +G+ L D + F+ +++
Sbjct: 311 AIIDAYAERGLWAEAEAVFYGKRDLLGPEKGVLEYNVMVKAYGKAKLYDKAFSLFKGMRN 370
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
P+ TYN LI + + + ++ M+ P T+ ++ YA G L
Sbjct: 371 HGTWPDEVTYNSLIQMFSGGDLMDQARDLLDEMQEAGFKPQCLTFSAVMACYARLGQLSD 430
Query: 315 MEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL- 372
+Y E+VK V E + ++I +++ + K R++ E VL
Sbjct: 431 AVDVYQEMVKAGVKPNEV-VYGSLINGFAEVGNVEEALK---YFRMMEESGIPANQIVLT 486
Query: 373 -LIRVYAKEDCLE---EMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
LI+VY+K C + + K + D E + M +S Y + + K
Sbjct: 487 SLIKVYSKLGCFDGAKHLYKKMKD-LEGGPDIIASNSM---ISLYADLGMISEAELVFKN 542
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI--DCSKKTFWIMYYAYATC 486
G S + + M +Y S ++E + +EM+ + DC ++ + YAT
Sbjct: 543 LRENGQADGVS-FATMMYLYKSMGMLDEAIDIAEEMKQSGLLRDCV--SYNKVMACYATN 599
Query: 487 GQRRKVNQVL 496
GQ R+ ++L
Sbjct: 600 GQLRECAELL 609
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 70/361 (19%), Positives = 153/361 (42%), Gaps = 12/361 (3%)
Query: 153 PMTKEEYTKGIKFAGRINNVDLAADLFAE--AANKHLKTIGTYNALLGAYMYNGLSDKCQ 210
P Y I G+ + AA++F+E + + TI T+N ++ +GL + +
Sbjct: 129 PCLTSTYNTLIDLYGKAGRLKDAAEVFSEMLKSGVAMDTI-TFNTMIFTCGSHGLLSEAE 187
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
SL D +E ISP TYN +S++ ++ + +I++ L P++ ++ ++
Sbjct: 188 SLL-DKMEERRISPDTRTYNIFLSLYADAGNINAALECYWKIRNVGLVPDIVSHRTILHI 246
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
M +VE + + MK D ++ +++ Y + G R + + + V G
Sbjct: 247 LCGRNMVREVEAVIEEMKKSSQKIDVHSVPGIIKMYINEGLHDRANNLLDKCQFDV-GFS 305
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMR--LIPEKEYRPWLNVLLIRVYAKEDCLEEMEK 388
+ A+I AY++ + + + R L PEK + NV+ ++ Y K ++
Sbjct: 306 SKVRAAIIDAYAERGLWAEAEAVFYGKRDLLGPEKGVLEY-NVM-VKAYGKAKLYDKAFS 363
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
H T V ++ + + +D+ + + + AG++ + + M Y
Sbjct: 364 LFKGMRNHGTWPDEV-TYNSLIQMFSGGDLMDQARDLLDEMQEAGFKPQCLTFSAVMACY 422
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV 508
A ++ + V +EM + ++ + + +A G + + +M ++G +P
Sbjct: 423 ARLGQLSDAVDVYQEMVKAGVKPNEVVYGSLINGFAEVGNVEEALKYFRMMEESG--IPA 480
Query: 509 N 509
N
Sbjct: 481 N 481
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
+ C+S + A ++ YN I +G +D F + +D L P++ T
Sbjct: 675 ESCESFTK-----AEVALDSFAYNVAIYAYGSSGEIDKALKTFMKRQDEGLEPDLVTSIN 729
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
L+ Y A M V+ IY +K G + P+ + ++ Y ++ E + + ++
Sbjct: 730 LVHCYGKAGMVEGVKRIYSQLKYGEIKPNDSLVKAVVDAYKNANRHDLAELVNQDIRFGF 789
Query: 327 DGKEF 331
D +++
Sbjct: 790 DSQQY 794
>gi|297805706|ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316573|gb|EFH46996.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 680
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 123/276 (44%), Gaps = 7/276 (2%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ T N ++ Y + + LF L+K +I P++V+YNT++ V+G L F
Sbjct: 332 LTTCNIMIDVYGQLDMVKEADRLFWSLRK-MDIEPNVVSYNTILRVYGEAELFGEAIHLF 390
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ ++ ++ NV TYN +I Y K + Q M++ + P+ TY ++ + +
Sbjct: 391 RLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKA 450
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G L R +++ ++ + L + MI AY + + K++ ++L P+ R
Sbjct: 451 GKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKL-PDNIPRE-- 507
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
I + AK EE AFE V + + C+++ Y R + ++
Sbjct: 508 --TAITILAKAGSTEEATWVFRQAFE-SGEVKDISVFGCMINLYSRNQRYVNVIEVFEKM 564
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+AG+ + + Y QR E+ ++V +EM+
Sbjct: 565 RTAGYFPDSNAIAMVLNAYGKQREFEKADTVYREMQ 600
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/401 (20%), Positives = 163/401 (40%), Gaps = 55/401 (13%)
Query: 90 DELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRP---RLALEVLNWRRR 146
DELLA++ +++ L + + + M L SR + +L +L+W
Sbjct: 95 DELLASIHQTQN-----EKELFSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHE 149
Query: 147 QAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGL 205
+A Y TP + Y ++ R +A LF E + L TY+ L+ ++ G+
Sbjct: 150 EAKY-TP-SVFAYNVVLRNVLRAKQFGIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGM 207
Query: 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
D S + ++++ +S +V Y+ LI + RL + F +K S ++P++ YN
Sbjct: 208 FDSALSWLQKMEQD-RVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYN 266
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
+I Y A ++ + + + M V P+T +Y LL Y + ++ +K
Sbjct: 267 SMINVYGKAKLFKEARVLIKEMNEAGVSPNTVSYSTLLSVYVENHKFLEALSVFAEMKEV 326
Query: 326 VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKED 381
+ MI Y + D +K+ + L + + + P NV+ ++RVY + +
Sbjct: 327 NCPLDLTTCNIMIDVYGQL---DMVKEADRLFWSLRKMDIEP--NVVSYNTILRVYGEAE 381
Query: 382 CLEE----------------------MEKSINDAFEHKTSVTTVRIMRC----------- 408
E M K EH+ + V+ M+
Sbjct: 382 LFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYS 441
Query: 409 -IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
I+S + + +D+ A ++ S+G + + LY + +V Y
Sbjct: 442 TIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAY 482
>gi|15242530|ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39980, chloroplastic; Flags: Precursor
gi|10176990|dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana]
gi|332007115|gb|AED94498.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 678
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 124/276 (44%), Gaps = 7/276 (2%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ T N ++ Y + + LF L+K +I P++V+YNT++ V+G L F
Sbjct: 330 LTTCNIMIDVYGQLDMVKEADRLFWSLRK-MDIEPNVVSYNTILRVYGEAELFGEAIHLF 388
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ ++ ++ NV TYN +I Y K + Q M++ + P+ TY ++ + +
Sbjct: 389 RLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKA 448
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G L R +++ ++ + L + MI AY + + K++ ++L P+ R
Sbjct: 449 GKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKL-PDNIPRE-- 505
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
I + AK EE AFE V + + C+++ Y R + ++
Sbjct: 506 --TAITILAKAGRTEEATWVFRQAFE-SGEVKDISVFGCMINLYSRNQRYVNVIEVFEKM 562
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+AG+ ++ + Y QR E+ ++V +EM+
Sbjct: 563 RTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQ 598
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 85/401 (21%), Positives = 165/401 (41%), Gaps = 55/401 (13%)
Query: 90 DELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRP---RLALEVLNWRRR 146
DELLA++ +++ L + + + M L SR + +L +L+W
Sbjct: 93 DELLASIHQTQN-----EKELFSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHE 147
Query: 147 QAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGL 205
+A Y TP + Y ++ R D+A LF E + L TY+ L+ ++ G+
Sbjct: 148 EAKY-TP-SVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGM 205
Query: 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
D S + ++++ +S +V Y+ LI + RL + F +K S ++P++ YN
Sbjct: 206 FDSALSWLQKMEQD-RVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYN 264
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
+I Y A ++ + + + M V+P+T +Y LL Y + ++ +K
Sbjct: 265 SMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEV 324
Query: 326 VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKED 381
+ MI Y + D +K+ + L + + + P NV+ ++RVY + +
Sbjct: 325 NCALDLTTCNIMIDVYGQL---DMVKEADRLFWSLRKMDIEP--NVVSYNTILRVYGEAE 379
Query: 382 CLEE----------------------MEKSINDAFEHKTSVTTVRIMRC----------- 408
E M K EH+ + V+ M+
Sbjct: 380 LFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYS 439
Query: 409 -IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
I+S + + +D+ A ++ S+G + + LY + +V Y
Sbjct: 440 TIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAY 480
>gi|334184699|ref|NP_001189682.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330253975|gb|AEC09069.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 613
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/338 (21%), Positives = 144/338 (42%), Gaps = 8/338 (2%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R N + A D+F K T TYN ++ Y S L+ +++ P+I
Sbjct: 263 RKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSH-QCKPNI 321
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TY L++ F R L + E F+++++ L P+V+ YN L+ Y A EI+ +
Sbjct: 322 CTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSL 381
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346
M+ PD +Y +++ Y +G E ++E +K ++ AYSK
Sbjct: 382 MQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSK--- 438
Query: 347 TDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR 404
+ K EA+++ + E P VL ++ +Y + +MEK + + E+ +
Sbjct: 439 ARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAE-MENGPCTADIS 497
Query: 405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
+++ Y + ++++ + +R + S++ Y+ ++ + V +EM
Sbjct: 498 TYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEM 557
Query: 465 ENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502
+ T ++ A ++ Q +V VL M K
Sbjct: 558 IDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHKG 595
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 128/329 (38%), Gaps = 49/329 (14%)
Query: 122 AFVE-LMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
A++E LMK+ G+ A++V +R T E Y I G+ + ++ L+
Sbjct: 255 AYIEGLMKRKGNTEE-AIDVFQRMKRDR---CKPTTETYNLMINLYGKASKSYMSWKLYC 310
Query: 181 EAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA------------------- 220
E + K I TY AL+ A+ GL +K + +F L+++
Sbjct: 311 EMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAG 370
Query: 221 ---------------NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
P +YN ++ +GR L EA F+E+K ++P + ++
Sbjct: 371 YPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHM 430
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
L++ Y A K E I + M V PDT +L Y G +MEKI +++
Sbjct: 431 LLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENG 490
Query: 326 VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKE----- 380
+ +I Y K +R IE L + EK +RP + R+ A
Sbjct: 491 PCTADISTYNILINIYGKAGFLER---IEELFVELKEKNFRPDVVTWTSRIGAYSRKKLY 547
Query: 381 -DCLEEMEKSINDAFEHKTSVTTVRIMRC 408
CLE E+ I+ V + C
Sbjct: 548 VKCLEVFEEMIDSGCAPDGGTAKVLLSAC 576
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/336 (21%), Positives = 140/336 (41%), Gaps = 74/336 (22%)
Query: 12 QTELLLQRLQRHSSKPKTLPPLSVFT-----LTKSPNHS---------FTRDLCAPATHT 57
+ E++L +Q H PKT+ ++V+ L K ++ RD C P T T
Sbjct: 230 RAEVVLVEMQNHHVSPKTI-GVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTET 288
Query: 58 VFPTLVRLLSETLT-------YPDARVRK------DLTQTVSALRDELLANVDDLDKVFR 104
+ ++ L + Y + R + T V+A E L + +++F
Sbjct: 289 -YNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLC--EKAEEIFE 345
Query: 105 VLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIK 164
L E G + Y + LM+ ++ R YG
Sbjct: 346 QLQEDG-----LEPDVYVYNALME-------------SYSRAGYPYG------------- 374
Query: 165 FAGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNGLSDKCQSLFRDLKKEANIS 223
AA++F+ + + +YN ++ AY GL +++F ++K+ I+
Sbjct: 375 ----------AAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKR-LGIA 423
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P++ ++ L+S + + V EA +E+ ++ + P+ F N ++ Y + K+E+I
Sbjct: 424 PTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKI 483
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
M+ GP D +TY +L+ Y +G L R+E+++
Sbjct: 484 LAEMENGPCTADISTYNILINIYGKAGFLERIEELF 519
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 17/190 (8%)
Query: 117 HSNGYAFVELMKQLGSRPRLALEVL----NWRRRQAGYGTPMTKEEYTKGIK-------- 164
HS+ A E MK+LG P + +L + R + KE G++
Sbjct: 407 HSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNS 466
Query: 165 ---FAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
GR+ + AE N I TYN L+ Y G ++ + LF +LK E
Sbjct: 467 MLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELK-EK 525
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
N P +VT+ + I + R L F+E+ DS +P+ T L++ + +V
Sbjct: 526 NFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQV 585
Query: 281 EEIYQMMKAG 290
+ + M G
Sbjct: 586 TSVLRTMHKG 595
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 123/319 (38%), Gaps = 46/319 (14%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N L+ AY + +SL+ L E+ P+ TY LI + L++ E E+
Sbjct: 180 FNLLIDAYGQKFQYKEAESLYVQLL-ESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEM 238
Query: 253 KDSNLSP---NVFTYNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGY 306
++ ++SP V YN I G M G EE ++Q MK P T TY L++ Y
Sbjct: 239 QNHHVSPKTIGVTVYNAYIEGLMKRK--GNTEEAIDVFQRMKRDRCKPTTETYNLMINLY 296
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
+ K ++ K + +R+ C + C+ T
Sbjct: 297 GKAS------------KSYMSWKLYCEMRSHQCKPNICTYT------------------- 325
Query: 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L+ +A+E E+ E+ I + + V + ++ SY R A
Sbjct: 326 -----ALVNAFAREGLCEKAEE-IFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIF 379
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
+ G R+ Y+ + Y + E+V +EM+ I + K+ ++ AY+
Sbjct: 380 SLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKA 439
Query: 487 GQRRKVNQVLGLMCKNGYD 505
K ++ M +NG +
Sbjct: 440 RDVTKCEAIVKEMSENGVE 458
>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
Length = 798
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 135/322 (41%), Gaps = 20/322 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEA--NISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+YNAL+ S + L + + N SP++V+Y+T+I F + VD F
Sbjct: 167 SYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLF 226
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
E+ P+V TY+ LI G A K E I Q M VMP+T TY +++RGY
Sbjct: 227 DEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSL 286
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G L E + L K G + ++ ++ C + R + ++ + K +P
Sbjct: 287 GQLE--EAVRLLKKMSGSGLQPDVVTYILLIQYYCKIG-RCAEARSVFDSMVRKGQKPNS 343
Query: 370 NV--LLIRVYAKEDCL----EEMEKSINDA--FEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
+ +L+ YA + L + ++ I D FEH R ++ +Y + AVDK
Sbjct: 344 TIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEH-------RAFNILICAYAKHGAVDK 396
Query: 422 LANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYY 481
G R Y + + + RVE+ +M + + + +F + +
Sbjct: 397 AMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIH 456
Query: 482 AYATCGQRRKVNQVLGLMCKNG 503
+ G+ +KV ++ M G
Sbjct: 457 GLCSIGEWKKVEELAFEMINRG 478
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 122/289 (42%), Gaps = 26/289 (8%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+N L+ AY +G DK + F ++++ + P +V+Y+T+I + ++ V+ F +
Sbjct: 380 AFNILICAYAKHGAVDKAMTAFTEMRQNG-LRPDVVSYSTVIHILCKIGRVEDAVYHFNQ 438
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI-YQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ LSPN+ ++ LI G + W KVEE+ ++M+ G + PD ++ G
Sbjct: 439 MVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRG-IHPDAIFMNTIMDNLCKEG 497
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--W 368
+ + +++V H +I Y C V + I+ R++ RP W
Sbjct: 498 RVVEAQDFFDMVIHIGVKPNVVSYNTLIDGY--CFVGKMDESIKQFDRMV-SIGLRPDSW 554
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
L+ Y K +E+ + F C ++S + + + V
Sbjct: 555 TYNALLNGYFKNGRVEDALALYREMFRKDVKF-------CAITSNIILHGLFQAGRIVA- 606
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM-ENYKIDCSKKTF 476
R LY KMV +Q R+E +VL + EN +D + + F
Sbjct: 607 --------ARELYM-KMVDRGTQLRIETYNTVLGGLCENSCVDEALRMF 646
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 94/222 (42%), Gaps = 27/222 (12%)
Query: 119 NGYAFV----ELMKQLGSRPRLALEVLNWRRRQA--GY--------GTPMTKEEYTKGIK 164
+GY FV E +KQ + L +W GY + +E + K +K
Sbjct: 526 DGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVK 585
Query: 165 FAGRINNVDL-----------AADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSL 212
F +N+ L A +L+ + ++ + I TYN +LG N D+ +
Sbjct: 586 FCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRM 645
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
F DL+ + + T+N +I+ ++ +D ++ F + P+V TY+ +I +
Sbjct: 646 FEDLRSK-EFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRI 704
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ + ++++ M+ D++ +++R G++ R
Sbjct: 705 EEGLLEESDDLFLSMEKNGCAADSHMLNVIIRRLLEKGDVRR 746
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 117/277 (42%), Gaps = 31/277 (11%)
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP---VMPDTNTY 299
D M+ F+ + + +P+VF+YN LI G + E+ M A P+ +Y
Sbjct: 147 DAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNVVSY 206
Query: 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI------KKI 353
++ G+ G + +K Y L + G+ FP + YS S+ D + K
Sbjct: 207 STIIDGFFKEGEV---DKAYFLFDEMI-GQGFP---PDVVTYS--SLIDGLCKAQAMNKA 257
Query: 354 EALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEE---MEKSINDAFEHKTSVTTVRIMR- 407
EA+++ + +K P ++IR Y LEE + K ++ + VT + +++
Sbjct: 258 EAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQY 317
Query: 408 -CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466
C + RC + + + R G + ++YH + YA++ + ++ +L M
Sbjct: 318 YCKIG---RCAEARSVFDSMVR---KGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIR 371
Query: 467 YKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
I + F I+ AYA G K M +NG
Sbjct: 372 DGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNG 408
>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
Length = 521
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 136/319 (42%), Gaps = 21/319 (6%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN ++ Y G K + L+R +++ A P+I T+ L++ F R L E F
Sbjct: 209 IDTYNRMIVIYGKAGEPSKAEMLYRSMRR-AMCPPNICTFTALMNAFARQGLYREAERYF 267
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
++++ + P+ + YN L+ Y EI+Q M+ PDT ++ +L+ Y +
Sbjct: 268 DKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRA 327
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP-- 367
G EKI++ ++ ++ AY++ R+++ E L+ + +P
Sbjct: 328 GLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAG---RVEEAEELVSAMERDGTKPDT 384
Query: 368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
+ LI Y E+ME A K ++ + + + +Y V A F+
Sbjct: 385 LIYNALINAYGVSGRHEDME-----ALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAGFIP 439
Query: 428 RAESAGWRLCR-------SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480
+AE L R + + + M YA ++ + S+LK+M T +++
Sbjct: 440 KAEELFQGLARLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCRADAVTARVLF 499
Query: 481 YAYATCGQRRKVNQVLGLM 499
A C +V QV LM
Sbjct: 500 SA---CRSPEQVEQVTQLM 515
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 120/276 (43%), Gaps = 9/276 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+ L+ Y G +K + LF ++K SP + NT + V EA F++
Sbjct: 141 TFGVLINGYRLAGSFEKAEELFVQMQKRG-YSPGPLACNTFLHVLEDAKEYRRAEALFRD 199
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ PN+ TYN +I Y A K E +Y+ M+ P+ T+ L+ +A G
Sbjct: 200 LEKYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGL 259
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-CSVTDRIKKIEALMR--LIPEKEYRPW 368
E+ ++ ++ + A++ AYS+ S ++ + + R P+
Sbjct: 260 YREAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVS--- 316
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+ +LI Y + E+ EK I + + ++ ++S+Y R V++ V
Sbjct: 317 -HNILINAYGRAGLYEDAEK-IFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSA 374
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
E G + +Y++ + Y R E+ME++L +M
Sbjct: 375 MERDGTKPDTLIYNALINAYGVSGRHEDMEALLAKM 410
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/323 (20%), Positives = 124/323 (38%), Gaps = 55/323 (17%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P + YN LI +G+ L ++ E F ++++ PN T+ LI GY A + K EE+
Sbjct: 102 PDLGCYNLLIDAYGKSLNIEDAEKTFNRMQEALCVPNEETFGVLINGYRLAGSFEKAEEL 161
Query: 284 Y-QMMK----AGPVM------------------------------PDTNTYLLLLRGYAH 308
+ QM K GP+ P+ +TY ++ Y
Sbjct: 162 FVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVIYGK 221
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP- 367
+G + E +Y ++ + A++ A+++ + ++ E + E +Y+P
Sbjct: 222 AGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGL---YREAERYFDKLQEFDYKPD 278
Query: 368 -WLNVLLIRVYAKE-------DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
+ L+ Y++ + + M++ N F S ++++Y R
Sbjct: 279 HYAYNALMEAYSQGGSPAGALEIFQTMQR--NGCFPDTVS------HNILINAYGRAGLY 330
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
+ K +SAG+ + YA RVEE E ++ ME + +
Sbjct: 331 EDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNAL 390
Query: 480 YYAYATCGQRRKVNQVLGLMCKN 502
AY G+ + +L M K+
Sbjct: 391 INAYGVSGRHEDMEALLAKMVKS 413
>gi|297820044|ref|XP_002877905.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323743|gb|EFH54164.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 439
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 95/388 (24%), Positives = 166/388 (42%), Gaps = 35/388 (9%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TI 190
+R + AL++ + R+Q Y P K YTK K G D A+ LF ++ LK TI
Sbjct: 72 NRWQSALKIFHLLRKQHWY-EPKCKT-YTKLFKVLGNCKQPDQASLLFEVMLSEGLKPTI 129
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
Y +L+ Y + L DK S +K ++ P + T+ LI +L D ++
Sbjct: 130 DVYTSLIAVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLIRCCCKLGRFDLVKRIIL 189
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHS 309
E+ + + TYN +I GY A M+ ++E + M++ G +PD T
Sbjct: 190 EMSYLGVGCSTVTYNTIIDGYGKAGMFEEMENVLADMIEDGDSLPDVFT----------- 238
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRA---MICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
L + E+V H DG E P I +I ++ K + KK+ ++M + EK +
Sbjct: 239 --LNSIIGSSEMVAHEEDG-ELPDITTFNILILSFGKAGM---YKKMSSVMDFM-EKRFF 291
Query: 367 PWLNV---LLIRVYAKEDCLEEMEKSINDAFEHK--TSVTTVRIMRC-IVSSYFRCNAVD 420
V ++I + K +E+M +D F V I C +V++Y + V
Sbjct: 292 SLTTVTYNIVIETFGKAGKIEKM----DDVFRKMKYQGVKPNSISYCSLVNAYSKAGLVG 347
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480
K+ + +++ ++ L ++ + Y + M+ + +ME K K TF M
Sbjct: 348 KIDSILRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMI 407
Query: 481 YAYATCGQRRKVNQVLGLMCKNGYDVPV 508
Y G V ++ M G ++ +
Sbjct: 408 KTYKAHGIFDAVQELEKQMISTGENLDI 435
>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59900
gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 907
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 2/162 (1%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G ++ Y I + ++ A AE NK L+ T+ TY +L+G Y G +K
Sbjct: 432 GLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKA 491
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
L+ ++ + I+PSI T+ TL+S R L+ F E+ + N+ PN TYN +I
Sbjct: 492 LRLYHEMTGKG-IAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIE 550
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
GY K E + M ++PDT +Y L+ G +G
Sbjct: 551 GYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQ 592
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 78/175 (44%), Gaps = 5/175 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I R +D A E + LK ++ YN+L+ + G + ++
Sbjct: 405 YSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMI 464
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + P++VTY +L+ + ++ + E+ ++P+++T+ L++G A +
Sbjct: 465 NK-KLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLI 523
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
+++ M V P+ TY +++ GY G+ M K +E +K + P
Sbjct: 524 RDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGD---MSKAFEFLKEMTEKGIVP 575
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 107/286 (37%), Gaps = 24/286 (8%)
Query: 200 YMYNGLSDK-CQS-------LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
++YN L D C+ L D + + P+ VTY+ LI +F R +D + E
Sbjct: 368 FVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGE 427
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ D+ L +V+ YN LI G+ E M + P TY L+ GY G
Sbjct: 428 MVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGK 487
Query: 312 LPRMEKIYELVKHHVDGKEF-PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+ + ++Y H + GK P I S I+ L + E +P N
Sbjct: 488 INKALRLY----HEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKP--N 541
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIM------RCIVSSYFRCNAVDKLAN 424
+ V + C E ++ AFE +T I+ R ++ +
Sbjct: 542 RVTYNVMIEGYC---EEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKV 598
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID 470
FV L Y + + + ++EE SV +EM +D
Sbjct: 599 FVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVD 644
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
L TYN L+ + G ++ L + + +SP +TY T+I+ R V
Sbjct: 784 LANTATYNMLIRGFCRQGRIEEASELITRMIGDG-VSPDCITYTTMINELCRRNDVKKAI 842
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298
+ + + + P+ YN LI G A GK E+ M ++P+ T
Sbjct: 843 ELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894
>gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g16010-like [Cucumis sativus]
Length = 637
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 84/375 (22%), Positives = 162/375 (43%), Gaps = 33/375 (8%)
Query: 143 WRRRQAGYGTPMT--KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT-YNALLGA 199
WR Q +P + E+++ +K G+ V+ A +F + + T YN L+
Sbjct: 144 WRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILM 203
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
M+ G +K L+ ++ E N SP +TY+ LIS FG+L D F E+K++ L P
Sbjct: 204 LMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHP 263
Query: 260 NVFTYNYLIAGYMTAWMWGKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
Y ++A Y + KVE + + MK P TY L++G G + R++
Sbjct: 264 TEKIYTTILAMY---FKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGL---GKVGRVD 317
Query: 317 KIYELVKHHV-DG--KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE-YRPWLNVL 372
Y L + + DG + LI +I ++ R ++E ++L + + + NV+
Sbjct: 318 DAYSLFFNMLKDGCKPDVVLINNLI------NILGRAGRLEDALKLFGKMDSLQCAPNVV 371
Query: 373 LIRVYAKEDCLEEMEKSINDA---FEHKTS---VTTVRIMRCIVSSYFRCNAVDKLANFV 426
K + E + ++A FE + + ++ + + N V+K +
Sbjct: 372 TYNTVIK--AIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLL 429
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
+ + G+ C + Y S + +R E + +E++ S + + +M + C
Sbjct: 430 EEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNC 489
Query: 487 GQRRKVNQVLGLMCK 501
G +++ + L C+
Sbjct: 490 G---RLSDAVDLFCE 501
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 127/339 (37%), Gaps = 89/339 (26%)
Query: 51 CAPATHTVFPTLVRLL-----------------SETLTYPDARVRKDLTQTVSALRDELL 93
C P T TV+ TL+ +L SE PD T T SAL
Sbjct: 190 CNP-TATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPD-------TITYSALISAF- 240
Query: 94 ANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTP 153
++ D FR+ DE Y + M ++ AL ++ G G
Sbjct: 241 GKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLV---EEMKGKGCA 297
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLF 213
T YT+ IK G++ VD A LF +N L D C+
Sbjct: 298 PTVFTYTELIKGLGKVGRVDDAYSLF----------------------FNMLKDGCK--- 332
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI----- 268
P +V N LI++ GR ++ F ++ +PNV TYN +I
Sbjct: 333 ----------PDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFE 382
Query: 269 --AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
A A +W ++ MKA + P + TY +L+ G+ + R+EK L+ +
Sbjct: 383 SKAPASEAALW------FEKMKANGIAPSSFTYAILIDGFCKTN---RVEKAL-LLLEEM 432
Query: 327 DGKEFPLIRAMICAYSKCSVTD---RIKKIEALMRLIPE 362
D K FP C + CS+ D R K+ EA L E
Sbjct: 433 DEKGFP-----PCPAAYCSLIDSLGRAKRYEAANELFQE 466
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 7/187 (3%)
Query: 122 AFVELMKQLGSRPR--LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF 179
A+ L+ LG R A E+ + G + Y IK G + A DLF
Sbjct: 443 AYCSLIDSLGRAKRYEAANELFQELKENCGRSSARV---YAVMIKHFGNCGRLSDAVDLF 499
Query: 180 AEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238
E + TYNAL+ + G+ D+ SL R+++ E +P I ++N +++ +
Sbjct: 500 CEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMR-ENGCTPDIKSHNIILNGLAK 558
Query: 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298
F ++K+S + P+ +YN +++ A M+ ++ + MK D+ T
Sbjct: 559 TGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFEYDSIT 618
Query: 299 YLLLLRG 305
Y +L
Sbjct: 619 YSSILEA 625
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 2/161 (1%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKC 209
G P Y I GR + A +LF E N + Y ++ + G
Sbjct: 436 GFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDA 495
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
LF + +K SP + TYN L+S R ++D + + ++++ +P++ ++N ++
Sbjct: 496 VDLFCEXEK-LGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILN 554
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
G + E++ MK +MPD +Y +L + +G
Sbjct: 555 GLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAG 595
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 113/286 (39%), Gaps = 19/286 (6%)
Query: 51 CAPATHTVFPTLVRLLSETLTYPDA-----RVRKDLTQTVSALRDELL------ANVDDL 99
CAP T + L++ L + DA + KD + L + L+ ++D
Sbjct: 296 CAPTVFT-YTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDA 354
Query: 100 DKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEY 159
K+F +D + N + ++K + A E W + G + Y
Sbjct: 355 LKLFGKMDS-----LQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTY 409
Query: 160 TKGIKFAGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNGLSDKCQSLFRDLKK 218
I + N V+ A L E K Y +L+ + + LF++LK+
Sbjct: 410 AILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKE 469
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
S + V Y +I FG + F E + SP+V+TYN L++G + A M
Sbjct: 470 NCGRSSARV-YAVMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMID 528
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
+ + + M+ PD ++ ++L G A +G R +++ +K
Sbjct: 529 EAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKE 574
>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 907
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 108/251 (43%), Gaps = 13/251 (5%)
Query: 62 LVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGY 121
LV+ ++E P+ V L ++ R N D+ + +F + + G C N
Sbjct: 354 LVKRVAEFGVSPNIFVYNALIDSLCKGR-----NFDEAELLFDRMGKIGLC-----PNDV 403
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
+ L+ R +L L++ G + Y I + ++ A L AE
Sbjct: 404 TYSILIDMFCRRGKLD-TALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAE 462
Query: 182 AANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
NK L+ T+ TY +L+G Y G +K L+ ++ + I PSI T+ TL+S R
Sbjct: 463 MINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKG-IVPSIYTFTTLLSGLFRAG 521
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
L+ F E+ + N+ PN TYN +I GY K E M ++PDT +Y
Sbjct: 522 LIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYR 581
Query: 301 LLLRGYAHSGN 311
L+ G +G
Sbjct: 582 PLIHGLCLTGQ 592
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 112/285 (39%), Gaps = 11/285 (3%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I YNAL+ + D+ + LF + K + P+ VTY+ LI +F R +D +
Sbjct: 367 IFVYNALIDSLCKGRNFDEAELLFDRMGK-IGLCPNDVTYSILIDMFCRRGKLDTALSFL 425
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
E+ D L P+V+ YN LI G+ E + M + P TY L+ GY
Sbjct: 426 GEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSK 485
Query: 310 GNLPRMEKIYELVKHHVDGKEF-PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP- 367
G + + ++Y H + GK P I S I+ L + E +P
Sbjct: 486 GKINKALRLY----HEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPN 541
Query: 368 --WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
NV +I Y +E + + + +N+ E K V R ++ + F
Sbjct: 542 RVTYNV-MIEGYCEEGNMSKAFEFLNEMIE-KGIVPDTYSYRPLIHGLCLTGQASEAKVF 599
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID 470
V L Y + + + ++EE SV ++M +D
Sbjct: 600 VDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVD 644
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 1/130 (0%)
Query: 169 INNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ ++ A +L L TYN L+ + G ++ L + + +SP +T
Sbjct: 766 VGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDG-VSPDCIT 824
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y T+IS R V + + + + P+ YN LI G A GK E+ M
Sbjct: 825 YTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEML 884
Query: 289 AGPVMPDTNT 298
+ P+T T
Sbjct: 885 RQGLKPNTET 894
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 9/156 (5%)
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
DL P+ VTY +I+ + V+ E +++ N PN TY + +T
Sbjct: 706 DLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLD-ILTK 764
Query: 275 WMWG--KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-DGKEF 331
+ K E++ + G ++ +T TY +L+RG+ G RME+ EL+ + DG
Sbjct: 765 GVGDMKKAVELHNAILKG-LLANTATYNMLIRGFCRQG---RMEEASELITRMIGDGVSP 820
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
I C D K IE L + EK RP
Sbjct: 821 DCITYTTMISELCRRNDVKKAIE-LWNSMTEKGIRP 855
>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Cucumis sativus]
Length = 637
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 84/375 (22%), Positives = 162/375 (43%), Gaps = 33/375 (8%)
Query: 143 WRRRQAGYGTPMT--KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT-YNALLGA 199
WR Q +P + E+++ +K G+ V+ A +F + + T YN L+
Sbjct: 144 WRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALSVFYQIKGRKCNPTATVYNTLILM 203
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
M+ G +K L+ ++ E N SP +TY+ LIS FG+L D F E+K++ L P
Sbjct: 204 LMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHP 263
Query: 260 NVFTYNYLIAGYMTAWMWGKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
Y ++A Y + KVE + + MK P TY L++G G + R++
Sbjct: 264 TEKIYTTILAMY---FKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGL---GKVGRVD 317
Query: 317 KIYELVKHHV-DG--KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE-YRPWLNVL 372
Y L + + DG + LI +I ++ R ++E ++L + + + NV+
Sbjct: 318 DAYSLFFNMLKDGCKPDVVLINNLI------NILGRAGRLEDALKLFGKMDSLQCAPNVV 371
Query: 373 LIRVYAKEDCLEEMEKSINDA---FEHKTS---VTTVRIMRCIVSSYFRCNAVDKLANFV 426
K + E + ++A FE + + ++ + + N V+K +
Sbjct: 372 TYNTVIK--AIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTNRVEKALLLL 429
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
+ + G+ C + Y S + +R E + +E++ S + + +M + C
Sbjct: 430 EEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNC 489
Query: 487 GQRRKVNQVLGLMCK 501
G +++ + L C+
Sbjct: 490 G---RLSDAVDLFCE 501
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 128/339 (37%), Gaps = 89/339 (26%)
Query: 51 CAPATHTVFPTLVRLL-----------------SETLTYPDARVRKDLTQTVSALRDELL 93
C P T TV+ TL+ +L SE PD T T SAL
Sbjct: 190 CNP-TATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPD-------TITYSALISAF- 240
Query: 94 ANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTP 153
++ D FR+ DE Y + M ++ AL ++ G G
Sbjct: 241 GKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLV---EEMKGKGCA 297
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLF 213
T YT+ IK G++ VD A LF +N L D C+
Sbjct: 298 PTVFTYTELIKGLGKVGRVDDAYSLF----------------------FNMLKDGCK--- 332
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI----- 268
P +V N LI++ GR ++ F ++ +PNV TYN +I
Sbjct: 333 ----------PDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFE 382
Query: 269 --AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
A A +W ++ MKA + P + TY +L+ G+ + R+EK L++ +
Sbjct: 383 SKAPASEAALW------FEKMKANGIAPSSFTYAILIDGFCKTN---RVEKALLLLE-EM 432
Query: 327 DGKEFPLIRAMICAYSKCSVTD---RIKKIEALMRLIPE 362
D K FP C + CS+ D R K+ EA L E
Sbjct: 433 DEKGFP-----PCPAAYCSLIDSLGRAKRYEAANELFQE 466
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 2/161 (1%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKC 209
G P Y I GR + A +LF E N + Y ++ + G
Sbjct: 436 GFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYAVMIKHFGNCGRLSDA 495
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
LF ++KK SP + TYN L+S R ++D + + ++++ +P++ ++N ++
Sbjct: 496 VDLFCEMKK-LGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILN 554
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
G + E++ MK +MPD +Y +L + +G
Sbjct: 555 GLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAG 595
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 114/286 (39%), Gaps = 19/286 (6%)
Query: 51 CAPATHTVFPTLVRLLSETLTYPDA-----RVRKDLTQTVSALRDELL------ANVDDL 99
CAP T + L++ L + DA + KD + L + L+ ++D
Sbjct: 296 CAPTVFT-YTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDA 354
Query: 100 DKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEY 159
K+F +D + N + ++K + A E W + G + Y
Sbjct: 355 LKLFGKMDS-----LQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTY 409
Query: 160 TKGIKFAGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNGLSDKCQSLFRDLKK 218
I + N V+ A L E K Y +L+ + + LF++LK+
Sbjct: 410 AILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKE 469
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
S + V Y +I FG + F E+K SP+V+TYN L++G + A M
Sbjct: 470 NCGRSSARV-YAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMID 528
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
+ + + M+ PD ++ ++L G A +G R +++ +K
Sbjct: 529 EAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKE 574
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 17/192 (8%)
Query: 122 AFVELMKQLGSRPR--LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF 179
A+ L+ LG R A E+ + G + Y IK G + A DLF
Sbjct: 443 AYCSLIDSLGRAKRYEAANELFQELKENCGRSSARV---YAVMIKHFGNCGRLSDAVDLF 499
Query: 180 AEAANKHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
E +K +G TYNAL+ + G+ D+ SL R+++ E +P I ++N ++
Sbjct: 500 CE-----MKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMR-ENGCTPDIKSHNIIL 553
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ + F ++K+S + P+ +YN +++ A M+ ++ + MK
Sbjct: 554 NGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFE 613
Query: 294 PDTNTYLLLLRG 305
D+ TY +L
Sbjct: 614 YDSITYSSILEA 625
>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 855
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 88/384 (22%), Positives = 158/384 (41%), Gaps = 23/384 (5%)
Query: 123 FVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEA 182
+ + Q GS L V +W + Q Y + Y I+ R N D A LF E
Sbjct: 120 LIRELTQRGSIEHCNL-VFSWMKNQKNYCA--RTDIYNMMIRLHARHNRTDQARGLFFEM 176
Query: 183 ANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241
K TYNAL+ A+ G ++ D+ + A I PS TYN LI+ G
Sbjct: 177 QKCRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAA-IPPSRSTYNNLINACGSSGN 235
Query: 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301
+++ D+ + P++ T+N ++ + + + K ++++K + PDT T+ +
Sbjct: 236 WKEALNVCKKMTDNGVGPDLVTHNIMLTAFKSGTQYSKALSYFELIKGTHIRPDTTTHNI 295
Query: 302 LLRGYAHSGNLPRMEKIYELVKH-----HVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
++ + I+ +K H D F +MI YS C I+ EA
Sbjct: 296 IIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVVTFT---SMIHLYSVCG---HIENCEAA 349
Query: 357 MRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS 412
++ + +P N++ L+ YA E + N+ ++ V ++++
Sbjct: 350 FNMMLAEGLKP--NIVSYNALLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTS-LLNA 406
Query: 413 YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS 472
Y R K K + + Y++ + Y S +E+ +L+EME KI +
Sbjct: 407 YGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPN 466
Query: 473 KKTFWIMYYAYATCGQRRKVNQVL 496
+ + A CGQ+ K++ VL
Sbjct: 467 VVSICTLLAACGRCGQKVKIDTVL 490
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/294 (20%), Positives = 117/294 (39%), Gaps = 41/294 (13%)
Query: 207 DKCQSLFRDLK-KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
DK +F +K K++ P +VT+ ++I ++ +++ EAAF + L PN+ +YN
Sbjct: 307 DKAVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYN 366
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
L+ Y M + +++ +K PD +Y LL Y S + +I++++K +
Sbjct: 367 ALLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRN 426
Query: 326 VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE 385
++ I +Y+ LI Y LE+
Sbjct: 427 N-------LKPNIVSYNA-----------------------------LIDAYGSNGLLED 450
Query: 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445
+ + + + K V I ++++ RC K+ + AE G +L Y+S +
Sbjct: 451 AIEILREMEQDKIHPNVVSICT-LLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAI 509
Query: 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
Y + ++ + M KI T+ ++ + C + K + L M
Sbjct: 510 GSYINVGEYDKAIDLYNSMRKKKIKSDSVTYTVL---ISGCCKMSKFGEALSFM 560
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 91/236 (38%), Gaps = 45/236 (19%)
Query: 180 AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV---- 235
AE L T+ YN+ +G+Y+ G DK L+ ++K+ I VTY LIS
Sbjct: 493 AEMRGIKLNTVA-YNSAIGSYINVGEYDKAIDLYNSMRKK-KIKSDSVTYTVLISGCCKM 550
Query: 236 --FGRLL-LVDHM--------------------------------EAAFQEIKDSNLSPN 260
FG L ++ M E+ F +K SP+
Sbjct: 551 SKFGEALSFMEEMMHLKLPMSKEVYSSIICAYSKQASALGQIIEAESTFNLMKSLGCSPD 610
Query: 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
V TY ++ Y A W K+ +++ M+ V DT L+R + G R+ + +
Sbjct: 611 VVTYTAMLDAYNAAEKWEKLYALFEEMEENDVKLDTIACAALMRAFNKGGQPGRVLSLAQ 670
Query: 321 LVKHH----VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL 372
++ D F ++ A + + D IK +E + +I +LN L
Sbjct: 671 SMREKDIPLSDTIFFEMVSACGLLHDWKTAVDMIKYMEPSLPVISSGCLNLFLNSL 726
>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 662
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 78/362 (21%), Positives = 153/362 (42%), Gaps = 24/362 (6%)
Query: 113 LFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV 172
L + N +FV ++ +P +A W R+Q Y + E Y + +V
Sbjct: 111 LIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNL--ECYVSLVDVLALAKDV 168
Query: 173 DLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
D + +E T+ N+L+ ++ G+ ++ ++R +K E I P++ TYN
Sbjct: 169 DRIRFICSEIRKFEFPMTVSPGNSLIKSFGKLGMVEELLWVWRKMK-ENGIEPTLYTYNF 227
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L++ + VD E F+ ++ + P+V TYN +I GY A K E ++M+
Sbjct: 228 LMNGLVSAMFVDSAERVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKG 287
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH---HVDGKEFPLIRAMICAYSKCSVTD 348
+ D TY+ +++ + +Y+ + V F L+ +C K + +
Sbjct: 288 LEADKITYMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGK--LNE 345
Query: 349 RIKKIEALMRLIPEKEYRPWLNV--LLIRVYAK----EDCLEEMEKSINDAFEHKTSVTT 402
E ++R K +P + + +LI YAK ED + + + I++ F +
Sbjct: 346 GYAVFENMIR----KGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYS 401
Query: 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
V +V+ + V++ ++ + G + Y S + RV+E E + +
Sbjct: 402 V-----VVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFE 456
Query: 463 EM 464
EM
Sbjct: 457 EM 458
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 86/228 (37%), Gaps = 18/228 (7%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLAL---------------EVLNWRRRQAGYGTPM 154
G C + + GYA E M + GS+P +A+ + + R G
Sbjct: 336 GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNP 395
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLF 213
Y+ + + V+ A D F L Y++L+ G D+ + LF
Sbjct: 396 DVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLF 455
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI-KDSNLSPNVFTYNYLIAGYM 272
++ ++ S YN LI F + VD A F+ + ++ V+TY LI+G
Sbjct: 456 EEMSEKGCTRDS-YCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTYTILISGMF 514
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ +++ MM + P L G SG + R KI +
Sbjct: 515 KEHRNEEALKLWDMMIDKGITPTAACLRALSTGLCLSGKVARACKILD 562
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/176 (18%), Positives = 81/176 (46%), Gaps = 10/176 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
++ ++G G ++ ++F ++ ++ + P++ Y LI + + V+
Sbjct: 329 AFSLVIGGLCKEGKLNEGYAVFENMIRKGS-KPNVAIYTVLIDGYAKTGSVEDAIRLLHR 387
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI---YQMMKAGPVMPDTNTYLLLLRGYAH 308
+ D +P+V TY+ ++ G G+VEE +Q + + ++ Y L+ G
Sbjct: 388 MIDEGFNPDVVTYSVVVNGLCKN---GRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGK 444
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE 364
+G + E+++E + ++ A+I A++K ++ + AL + + E+E
Sbjct: 445 AGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK---HGKVDEALALFKRMEEEE 497
>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 569
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 90/200 (45%), Gaps = 33/200 (16%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
+YN ++ AY GL + Q++F ++K+ I+P++ ++ L+S + + V E
Sbjct: 359 ASYNIMVDAYGRGGLHEDAQAVFEEMKR-LGITPTMKSHMLLLSAYSKAGDVAKCEDIVN 417
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+ +S L P+ F N ++ Y +GK+EE+ M++GP D +TY +L+ Y +G
Sbjct: 418 ELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGRAG 477
Query: 311 NLPRMEKIY--------------------------------ELVKHHVDGKEFPLIRAMI 338
+ME ++ E+ + +D P R
Sbjct: 478 FFEKMEGLFQSLAAKNLKPDVVTWTSRLGAYSRKKLYTKCLEIFEEMIDAGCHPDGRTAK 537
Query: 339 CAYSKCSVTDRIKKIEALMR 358
S CS D+I+++ ++R
Sbjct: 538 VLLSSCSSEDQIEQVTTVIR 557
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 130/300 (43%), Gaps = 5/300 (1%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
+ T TY LL AY +GL +K +++F +++K + PS + YN I +
Sbjct: 180 IPTEDTYALLLKAYCTSGLLEKAEAIFAEMRK-YGLPPSAIVYNAYIDGLMKAGNPQRAV 238
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
FQ +K P+ TY LI + A +++ M++ P+ TY L+ +
Sbjct: 239 EIFQRMKRDCCQPSTETYTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAF 298
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
A G + E+I+E ++ + A++ AYS+ +I +LM+ + + R
Sbjct: 299 AREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDR 358
Query: 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
N+ ++ Y + L E +++ + + T++ ++S+Y + V K + V
Sbjct: 359 ASYNI-MVDAYGRGG-LHEDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIV 416
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN--YKIDCSKKTFWIMYYAYA 484
+G + +S + +Y + +ME VL ME+ Y D S I Y A
Sbjct: 417 NELHESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIYGRA 476
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/356 (19%), Positives = 146/356 (41%), Gaps = 8/356 (2%)
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDK 208
YG P + Y I + N A ++F + + TY L+ + S
Sbjct: 212 YGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETYTLLINLHGKASQSYM 271
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
LF +++ + P+I TY L++ F R L + E F+++++ P+V+ YN L+
Sbjct: 272 ALKLFNEMRSQ-KCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALM 330
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
Y A EI+ +M+ PD +Y +++ Y G + ++E +K
Sbjct: 331 EAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGIT 390
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEM 386
++ AYSK + K E ++ + E P VL ++ +Y + +M
Sbjct: 391 PTMKSHMLLLSAYSKAG---DVAKCEDIVNELHESGLEPDTFVLNSMLNLYGRLGQFGKM 447
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446
E+ + A E T + +++ Y R +K+ + + + + S++
Sbjct: 448 EEVLT-AMESGPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPDVVTWTSRLG 506
Query: 447 MYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502
Y+ ++ + + +EM + +T ++ + ++ Q +V V+ M KN
Sbjct: 507 AYSRKKLYTKCLEIFEEMIDAGCHPDGRTAKVLLSSCSSEDQIEQVTTVIRTMHKN 562
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/288 (19%), Positives = 118/288 (40%), Gaps = 6/288 (2%)
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
++ ++ +N +I +GR L E + E+ ++ P TY L+ Y T+ + K
Sbjct: 142 SSFQSDVMIFNLVIDAYGRKSLYKMAETTYFELIEARCIPTEDTYALLLKAYCTSGLLEK 201
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
E I+ M+ + P Y + G +GN R +I++ +K +I
Sbjct: 202 AEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPSTETYTLLIN 261
Query: 340 AYSKCSVTDRIKKIEALMRLIPEKEYRPWL--NVLLIRVYAKEDCLEEMEKSINDAFEHK 397
+ K S + K+ MR ++ +P + L+ +A+E E+ E+ I + +
Sbjct: 262 LHGKASQSYMALKLFNEMR---SQKCKPNICTYTALVNAFAREGLCEKAEE-IFEQLQED 317
Query: 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
V ++ +Y R A + G R+ Y+ + Y E+
Sbjct: 318 GHEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDA 377
Query: 458 ESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
++V +EM+ I + K+ ++ AY+ G K ++ + ++G +
Sbjct: 378 QAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLE 425
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 115/307 (37%), Gaps = 63/307 (20%)
Query: 48 RDLCAPATHTVFPTLVRLLSETLT-------YPDARVRK------DLTQTVSALRDELLA 94
RD C P+T T + L+ L + + + R +K T V+A E L
Sbjct: 246 RDCCQPSTET-YTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLC 304
Query: 95 NVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGT 152
+ +++F L E G + YA+ LM+ P A E+ + + G
Sbjct: 305 --EKAEEIFEQLQEDG-----HEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHM---GC 354
Query: 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQS 211
+ Y + GR + A +F E + T+ ++ LL AY G KC+
Sbjct: 355 EPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCED 414
Query: 212 LFRDLKKEANISPS-----------------------------------IVTYNTLISVF 236
+ +L E+ + P I TYN LI+++
Sbjct: 415 IVNELH-ESGLEPDTFVLNSMLNLYGRLGQFGKMEEVLTAMESGPYATDISTYNILINIY 473
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
GR + ME FQ + NL P+V T+ + Y ++ K EI++ M PD
Sbjct: 474 GRAGFFEKMEGLFQSLAAKNLKPDVVTWTSRLGAYSRKKLYTKCLEIFEEMIDAGCHPDG 533
Query: 297 NTYLLLL 303
T +LL
Sbjct: 534 RTAKVLL 540
>gi|110740599|dbj|BAE98404.1| hypothetical protein [Arabidopsis thaliana]
Length = 546
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 124/276 (44%), Gaps = 7/276 (2%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ T N ++ Y + + LF L+K +I P++V+YNT++ V+G L F
Sbjct: 198 LTTCNIMIDVYGQLDMVKEADRLFWSLRK-MDIEPNVVSYNTILRVYGEAELFGEAIHLF 256
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ ++ ++ NV TYN +I Y K + Q M++ + P+ TY ++ + +
Sbjct: 257 RLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKA 316
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G L R +++ ++ + L + MI AY + + K++ ++L P+ R
Sbjct: 317 GKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKL-PDNIPRE-- 373
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
I + AK EE AFE V + + C+++ Y R + ++
Sbjct: 374 --TAITILAKAGRTEEATWVFRQAFE-SGEVKDISVFGCMINLYSRNQRYVNVIEVFEKM 430
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+AG+ ++ + Y QR E+ ++V +EM+
Sbjct: 431 RTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQ 466
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/351 (21%), Positives = 146/351 (41%), Gaps = 47/351 (13%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNA 195
+L +L+W +A Y TP + Y ++ R D+A LF E + L TY+
Sbjct: 6 SLALLDWVHEEAKY-TP-SVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYST 63
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ ++ G+ D S + ++++ +S +V Y+ LI + RL + F +K S
Sbjct: 64 LITSFGKEGMFDSALSWLQKMEQD-RVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRS 122
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
++P++ YN +I Y A ++ + + + M V+P+T +Y LL Y +
Sbjct: 123 GITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEA 182
Query: 316 EKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--- 372
++ +K + MI Y + D +K+ + L + + + P NV+
Sbjct: 183 LSVFAEMKEVNCALDLTTCNIMIDVYGQL---DMVKEADRLFWSLRKMDIEP--NVVSYN 237
Query: 373 -LIRVYAKEDCLEE----------------------MEKSINDAFEHKTSVTTVRIMRC- 408
++RVY + + E M K EH+ + V+ M+
Sbjct: 238 TILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSR 297
Query: 409 -----------IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
I+S + + +D+ A ++ S+G + + LY + +V Y
Sbjct: 298 GIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAY 348
>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 653
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 138/324 (42%), Gaps = 51/324 (15%)
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
N+LI FG L LV+ + ++ +K++ + P+++TYN+L+ G + + E+++++M
Sbjct: 189 NSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDG 248
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
G ++PDT TY ++++GY +G L + MEK ++ +V + + + YS+
Sbjct: 249 GKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSE----- 303
Query: 349 RIKKIEALMRLIPEKEYR-----PWLNVLLIRVYAKE-DCLEEMEKSINDAFEHKTSVTT 402
+ + + L E E R P L+I K+ C+E ++ + K
Sbjct: 304 --RDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAY--AVFETMNQKGCRAN 359
Query: 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR------------LCRS----------- 439
V I ++ SY + ++++ +R ++ G+ LC+S
Sbjct: 360 VAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFD 419
Query: 440 ------------LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
Y S + R+E+ E++ +EM + + A A G
Sbjct: 420 FCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHG 479
Query: 488 QRRKVNQVLGLMCKNGYDVPVNAF 511
+ + + G M + G D V F
Sbjct: 480 KIDQALALFGRMEEEGCDQTVYTF 503
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 103/280 (36%), Gaps = 31/280 (11%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C R+ YA E M Q G R +A+ YT I +
Sbjct: 334 GLCKQRKCMEAYAVFETMNQKGCRANVAI--------------------YTALIDSYSKN 373
Query: 170 NNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+++ A LF N+ + TY+ L+ +G D LF D + ++ + +
Sbjct: 374 GSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELF-DFCRNKGVAINAMF 432
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y +LI G+ ++ E F+E+ + + + + YN +I + ++ M+
Sbjct: 433 YASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRME 492
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCS 345
T+ +L+ G + E+ + +D P + RA+ C
Sbjct: 493 EEGCDQTVYTFTILIDGLFKE---HKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCG 549
Query: 346 VTDRIKKI---EALMRLIPEKEYRPWLNVLLIRVYAKEDC 382
R KI A M +IPE + +N L KE C
Sbjct: 550 KVARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEAC 589
>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Cucumis sativus]
Length = 576
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/329 (21%), Positives = 135/329 (41%), Gaps = 50/329 (15%)
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
A+++ + + G+ + A+E+ + +R G T + YT I G+ + +A ++F E
Sbjct: 230 AYIDGLVKGGNNVK-AVEIFHRMKRD---GCQPTTDTYTMLINVYGKESKSHMAQNIFDE 285
Query: 182 AANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-------------- 226
+ K I T+ AL+ A GL +K + +F ++ EA P +
Sbjct: 286 MRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQ-EAGYEPDVYAYNALMESYSRAG 344
Query: 227 ---------------------VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
+YN ++ +GR L + +A F+E+K ++P + ++
Sbjct: 345 FPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHM 404
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
L++ Y +A K E+I M + PDT +L Y G +ME ++ ++
Sbjct: 405 LLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKG 464
Query: 326 VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRV--YAKED-- 381
+ +I Y + +R +E L +L+P K P + R+ Y+++
Sbjct: 465 PCRADISTYNILINVYGRAGFVER---MEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLY 521
Query: 382 --CLEEMEKSINDAFEHKTSVTTVRIMRC 408
CLE EK I+ V + C
Sbjct: 522 KRCLELFEKMIDAGCYPDGGTAKVLLSAC 550
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 122/312 (39%), Gaps = 38/312 (12%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YN L+ AY L +S + +L E++ P+ TY L+ + + L++ EA F E
Sbjct: 157 VYNLLMDAYGQRSLYKDVESTYLELL-ESHCIPTEDTYALLLKAYCKSGLLEKAEAVFAE 215
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ LSP+ YN I G + K EI+ MK P T+TY +L+ Y
Sbjct: 216 MRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQPTTDTYTMLINVYGKES- 274
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
K H+ F +R C + C+ T
Sbjct: 275 -----------KSHMAQNIFDEMRTQRCKPNICTFT------------------------ 299
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
L+ A+E E+ E+ I + + V ++ SY R A +
Sbjct: 300 ALVNALAREGLCEKAEE-IFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQH 358
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
G R+ Y+ + Y E+ ++V +EM+ I + K+ ++ AY++ G K
Sbjct: 359 MGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAK 418
Query: 492 VNQVLGLMCKNG 503
++G M K+G
Sbjct: 419 CEDIIGQMHKSG 430
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 122/292 (41%), Gaps = 15/292 (5%)
Query: 180 AEAANKHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
AEA ++ G YNA + + G + K +F +K++ P+ TY LI
Sbjct: 209 AEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDG-CQPTTDTYTMLI 267
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+V+G+ + F E++ PN+ T+ L+ + K EEI++ M+
Sbjct: 268 NVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYE 327
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
PD Y L+ Y+ +G +I+ L++H + M+ AY + + + + +
Sbjct: 328 PDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAV 387
Query: 354 EALMRLIPEKEYRPWL--NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVRIMRCIV 410
M+ I P + ++LL+ Y+ + + E I HK+ + +M ++
Sbjct: 388 FEEMKRIG---ITPTMKSHMLLLSAYSSAGNVAKCEDIIGQM--HKSGLKPDTFVMNSML 442
Query: 411 SSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
+ Y R K+ + + R S Y+ + +Y VE ME + +
Sbjct: 443 NLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVERMEELFQ 494
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/315 (20%), Positives = 137/315 (43%), Gaps = 7/315 (2%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
+ T TY LL AY +GL +K +++F +++K +SPS + YN I G + ++++
Sbjct: 187 IPTEDTYALLLKAYCKSGLLEKAEAVFAEMRKYG-LSPSAIVYNAYID--GLVKGGNNVK 243
Query: 247 AA--FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304
A F +K P TY LI Y + I+ M+ P+ T+ L+
Sbjct: 244 AVEIFHRMKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVN 303
Query: 305 GYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE 364
A G + E+I+E ++ + A++ +YS+ +I +LM+ + +
Sbjct: 304 ALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEP 363
Query: 365 YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
R N+ ++ Y + L E +++ + + T++ ++S+Y V K +
Sbjct: 364 DRASYNI-MVDAYGRAG-LHEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCED 421
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
+ + +G + + +S + +Y + +ME + M+ T+ I+ Y
Sbjct: 422 IIGQMHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYG 481
Query: 485 TCGQRRKVNQVLGLM 499
G ++ ++ L+
Sbjct: 482 RAGFVERMEELFQLL 496
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 20/187 (10%)
Query: 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAA 176
H + A E MK++G P + +L + ++ G+++ L
Sbjct: 381 HEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCED-------IIGQMHKSGLKP 433
Query: 177 DLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
D F N++L Y G K + LF ++K I TYN LI+V+
Sbjct: 434 DTF------------VMNSMLNLYGRLGQFGKMEDLFSTMQK-GPCRADISTYNILINVY 480
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
GR V+ ME FQ + NL P+V T+ I Y ++ + E+++ M PD
Sbjct: 481 GRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDG 540
Query: 297 NTYLLLL 303
T +LL
Sbjct: 541 GTAKVLL 547
>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
Length = 667
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 9/175 (5%)
Query: 175 AADLFAEAANKHL--KTIGTYNALLGAY-MYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
A +L+ E K + TI TYN+L+ Y M N LS+ L DL N SP IVT+ +
Sbjct: 294 ANELYKEMITKGISPNTI-TYNSLMDGYCMQNRLSEANNML--DLMVRNNCSPDIVTFTS 350
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
LI + ++ VD F++I L N TY+ L+ G+ + EE++Q M +
Sbjct: 351 LIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLG 410
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELV---KHHVDGKEFPLIRAMICAYSK 343
V+PD TY +LL G +G L + +I+E + K ++D + +I +C K
Sbjct: 411 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGK 465
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I R +D A LF E K +K+ + TYN+L+G G + L +D+
Sbjct: 208 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMT 267
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
I P+++T+N LI VF + + ++E+ +SPN TYN L+ GY
Sbjct: 268 SR-KIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRL 326
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
+ + +M PD T+ L++GY
Sbjct: 327 SEANNMLDLMVRNNCSPDIVTFTSLIKGYC 356
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 109/254 (42%), Gaps = 34/254 (13%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G CL + S V M + G +P + +T GI +G
Sbjct: 144 GLCLESKVSEAVVLVARMVENGCQPNV-----------------VTYNSIVNGICKSG-- 184
Query: 170 NNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ LA DL + +++K + TY+ ++ + +G D SLF++++ + I S+VT
Sbjct: 185 -DTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG-IKSSLVT 242
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKD---SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
YN+L+ G L Q +KD + PNV T+N LI ++ + E+Y+
Sbjct: 243 YNSLV---GGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYK 299
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
M + P+T TY L+ GY L + +L+ + + ++I Y K
Sbjct: 300 EMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCK-- 357
Query: 346 VTDRIKKIEALMRL 359
+K+++ M+L
Sbjct: 358 ----VKRVDEGMKL 367
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 2/153 (1%)
Query: 172 VDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
+++A +LF E + L + TY LL NG +K +F DL+K + ++ IV Y
Sbjct: 396 LEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQK-SKMNLDIVMYT 454
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
+I + V+ F + + PNV TY +I+G + + + M+
Sbjct: 455 IIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEED 514
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
P+ TY L+R + G+L K+ E +K
Sbjct: 515 GNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 547
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I T+ +L+ Y D+ LFR + K ++ + VTY+ L+ F + ++ E F
Sbjct: 345 IVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANT-VTYSILVQGFCQSGKLEIAEELF 403
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
QE+ + P+V TY L+ G K EI++ ++ + D Y +++ G
Sbjct: 404 QEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKG 463
Query: 310 GNL 312
G +
Sbjct: 464 GKV 466
>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 138/324 (42%), Gaps = 51/324 (15%)
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
N+LI FG L LV+ + ++ +K++ + P+++TYN+L+ G + + E+++++M
Sbjct: 187 NSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDG 246
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
G ++PDT TY ++++GY +G L + MEK ++ +V + + + YS+
Sbjct: 247 GKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSE----- 301
Query: 349 RIKKIEALMRLIPEKEYR-----PWLNVLLIRVYAKE-DCLEEMEKSINDAFEHKTSVTT 402
+ + + L E E R P L+I K+ C+E ++ + K
Sbjct: 302 --RDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAY--AVFETMNQKGCRAN 357
Query: 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR------------LCRS----------- 439
V I ++ SY + ++++ +R ++ G+ LC+S
Sbjct: 358 VAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFD 417
Query: 440 ------------LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
Y S + R+E+ E++ +EM + + A A G
Sbjct: 418 FCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHG 477
Query: 488 QRRKVNQVLGLMCKNGYDVPVNAF 511
+ + + G M + G D V F
Sbjct: 478 KIDQALALFGRMEEEGCDQTVYTF 501
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 103/280 (36%), Gaps = 31/280 (11%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C R+ YA E M Q G R +A+ YT I +
Sbjct: 332 GLCKQRKCMEAYAVFETMNQKGCRANVAI--------------------YTALIDSYSKN 371
Query: 170 NNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+++ A LF N+ + TY+ L+ +G D LF D + ++ + +
Sbjct: 372 GSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELF-DFCRNKGVAINAMF 430
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y +LI G+ ++ E F+E+ + + + + YN +I + ++ M+
Sbjct: 431 YASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRME 490
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCS 345
T+ +L+ G + E+ + +D P + RA+ C
Sbjct: 491 EEGCDQTVYTFTILIDGLFKE---HKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCG 547
Query: 346 VTDRIKKI---EALMRLIPEKEYRPWLNVLLIRVYAKEDC 382
R KI A M +IPE + +N L KE C
Sbjct: 548 KVARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEAC 587
>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 775
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 144/344 (41%), Gaps = 12/344 (3%)
Query: 173 DLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
DL+ F + + +++ TYN ++G G +SLF +K + ++P IVTYN+
Sbjct: 234 DLSNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMK-QMGLTPDIVTYNS 292
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
LI +G+L L+D F+E+KD P+V TYN LI + K MK
Sbjct: 293 LIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSG 352
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEK-IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI 350
+ P+ TY L+ L + K + ++ + + EF + ++D +
Sbjct: 353 LKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDAL 412
Query: 351 KKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH--KTSVT-TVRIMR 407
K + ++++ + NV+ C E D F K VT ++
Sbjct: 413 KLADEMLQV------QVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYT 466
Query: 408 CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467
+V + + V+ +K + + LY + + SQ ++EE E V+ EM+
Sbjct: 467 ALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKAC 526
Query: 468 KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
I + + I AY G+ + +L MC G +V + F
Sbjct: 527 GIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTF 570
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 9/181 (4%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
TI T+ L+ GL ++ F + + N+ P+ V T ++ L +++EAA
Sbjct: 566 TIVTFCVLIDGLCKKGLVEEAIDYFARMA-DFNLQPNNVAVCT--ALIDGLCKNNYIEAA 622
Query: 249 ---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
F E++D N+ P+ Y LI G + + + I M + D + Y L+ G
Sbjct: 623 KKLFDEMQDKNMVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWG 682
Query: 306 YAHSGNLPRMEKIY--ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
+ GNL + +++ E++ + E IR + Y S+ + I+ + L++ +P
Sbjct: 683 LSQ-GNLVQQARMFLNEMIGKGIVPDEILCIRLLRKYYELGSIDEAIELHDELLKKVPLD 741
Query: 364 E 364
E
Sbjct: 742 E 742
>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 81/344 (23%), Positives = 143/344 (41%), Gaps = 12/344 (3%)
Query: 173 DLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
DL+ D F + + T+ TYN ++G G +SLF +KK ++P IVTYNT
Sbjct: 114 DLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKK-MGLTPDIVTYNT 172
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
LI +G++ L+D F+E+K P+V TYN LI + + E ++ MK
Sbjct: 173 LIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKD 232
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRI 350
+ P+ +Y L+ G + K + ++ + + EF ++I A K
Sbjct: 233 LKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTY-SSLIDANCKAGNLG-- 289
Query: 351 KKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE--HKTSVT-TVRIMR 407
EA M + LN++ C E M + F K VT ++
Sbjct: 290 ---EAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYT 346
Query: 408 CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467
++ + + ++DK + L+ + + S+ ++EE + ++ EM+
Sbjct: 347 ALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKES 406
Query: 468 KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
I + + + AY G R + +L M G +V V F
Sbjct: 407 GIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTF 450
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y L+ AY G + +L +++ + ++VT+ LI + LV F +
Sbjct: 415 YTTLMDAYFKAGNRTEAINLLEEMR-DLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRM 473
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
D +L PNV Y LI G G ++++ M+ ++PD Y ++ G GN
Sbjct: 474 PDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNF 533
>gi|255660916|gb|ACU25627.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 484
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 4/154 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N L+ + +G D F D+K ISP +VTYNT+I+ R+ +D E F E
Sbjct: 152 TFNVLIWGFFLSGKVDTANRFFEDMKSR-EISPDVVTYNTMINGCYRVKKMDEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V +Y LI GY++ + + MK + P+ TY LL G +G
Sbjct: 211 MKGRNIEPTVVSYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCDAGK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKC 344
+ + I E+V ++ K+ + +I S+C
Sbjct: 271 MSEAQSILKEMVDKYIAPKDNSIFMRLIS--SQC 302
>gi|168005568|ref|XP_001755482.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693189|gb|EDQ79542.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 765
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 74/377 (19%), Positives = 158/377 (41%), Gaps = 57/377 (15%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS------------- 234
K + N++L +YNG DK LF LKKE + P VTY+T+I+
Sbjct: 256 KNVFVCNSILSTMIYNGKIDKAFRLFEQLKKEG-LQPDTVTYSTVIAGCAKTRDGYSKAL 314
Query: 235 ----------------VFGRLL-------LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
++G ++ L +A FQE+ D+ +PN+F Y+ L+ Y
Sbjct: 315 ALIEDIKASGLTQDAVIYGAMMNVCASQGLDREAQATFQEMCDAGFTPNLFHYSSLLNAY 374
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
+ + + E + + ++A + P+ Y L+ YA+ + ++++ ++ ++
Sbjct: 375 ASRGKYQQAERVLEAIRAAGLTPNLVVYNSLMNAYANCQMPSKAREVFDRIEAEGLQRDM 434
Query: 332 PLIRAMICAYSKCS------------VTDRIKKIEALMRLIPEK----EYRPWLNV---L 372
+M+ AY+K + +K + LM+L+ Y W +V +
Sbjct: 435 VSFCSMMDAYAKSDMLKEAQETFDSMIAQGMKPVYMLMQLLDLSGSLCSYGWWGSVGYSI 494
Query: 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA 432
LI YAK ++ + K ++ + + + + ++ Y +D + +K+ ++
Sbjct: 495 LISAYAKLGEMDGVLKLVDQIEKGQNGECDILLFNTLLKVYCNAGYMDGVTAVLKKMDAE 554
Query: 433 GWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
G R ++ + +A + + L++ME ++ T+ ++ Y G+ ++
Sbjct: 555 GCGSDRGTFNILIGYFAKEDLGDLALKTLEDMETRGHRPNEATYNALFQGYVKNGKMEEM 614
Query: 493 NQVLGLMCKNGYDVPVN 509
+ L M + G P N
Sbjct: 615 FEALEAMKQRGI-TPTN 630
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/355 (18%), Positives = 138/355 (38%), Gaps = 61/355 (17%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY + +G S K +F +L ++ + ++ N+++S +D F++
Sbjct: 224 TYTSYFSVLGKSGQSRKAIRVFNELPLDSEVRKNVFVCNSILSTMIYNGKIDKAFRLFEQ 283
Query: 252 IKDSNLSPNVFTYNYLIAG-----------------------YMTAWMWG---------- 278
+K L P+ TY+ +IAG A ++G
Sbjct: 284 LKKEGLQPDTVTYSTVIAGCAKTRDGYSKALALIEDIKASGLTQDAVIYGAMMNVCASQG 343
Query: 279 ---KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
+ + +Q M P+ Y LL YA G + E++ E ++ +
Sbjct: 344 LDREAQATFQEMCDAGFTPNLFHYSSLLNAYASRGKYQQAERVLEAIRAAGLTPNLVVYN 403
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL-LIRVYAKEDCLEEMEKSINDAF 394
+++ AY+ C + + + E R+ E R ++ ++ YAK D L+E +++ +
Sbjct: 404 SLMNAYANCQMPSKAR--EVFDRIEAEGLQRDMVSFCSMMDAYAKSDMLKEAQETFDSMI 461
Query: 395 EH--KTSVTTVRIM-----------------RCIVSSYFRCNAVDKLANFVKRAESAGWR 435
K ++++ ++S+Y + +D + V + E
Sbjct: 462 AQGMKPVYMLMQLLDLSGSLCSYGWWGSVGYSILISAYAKLGEMDGVLKLVDQIEKGQNG 521
Query: 436 LCRS-LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM--YYAYATCG 487
C L+++ + +Y + ++ + +VLK+M+ + TF I+ Y+A G
Sbjct: 522 ECDILLFNTLLKVYCNAGYMDGVTAVLKKMDAEGCGSDRGTFNILIGYFAKEDLG 576
>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
Length = 625
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 132/298 (44%), Gaps = 7/298 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA--F 249
TY LL AY +GL +K +++F +++K PS V YN I G + D +A F
Sbjct: 243 TYALLLKAYCTSGLLEKAEAVFAEMRKYG-FPPSAVVYNAYID--GLMKGGDTQKAVEIF 299
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ +K P+ TY LI Y A +++ M++ P+ T+ L+ +A
Sbjct: 300 ERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFARE 359
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G + E+I+E ++ + A++ AYS+ +I +LM+ + + R
Sbjct: 360 GLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASY 419
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
N+ ++ Y + L E +++ + + T++ ++S+Y R V K V +
Sbjct: 420 NI-MVDAYGRAG-LHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIVNQM 477
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+G + + +S + +Y + E+ME VL ME T+ I+ Y G
Sbjct: 478 HKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRAG 535
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/367 (20%), Positives = 154/367 (41%), Gaps = 30/367 (8%)
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDK 208
YG P + Y I + + A ++F + + TY L+ Y S
Sbjct: 270 YGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYM 329
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
+F +++ + P+I T+ L++ F R L + E F++++++ L P+V+ YN L+
Sbjct: 330 ALKVFHEMRSQ-KCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALM 388
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
Y A EI+ +M+ PD +Y +++ Y +G + ++E++K
Sbjct: 389 EAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRL--- 445
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEM 386
P +++ + S S ++ K E ++ + + +P VL ++ +Y + E+M
Sbjct: 446 GITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKM 505
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL------ 440
E+ + A E + +++ Y R A F R E L RSL
Sbjct: 506 EEVLT-AMEKGPYPADISTYNILINIYGR-------AGFFARME----ELFRSLPARNLI 553
Query: 441 -----YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQV 495
+ S++ Y+ +++ V +EM + T ++ A + Q ++V V
Sbjct: 554 PDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTV 613
Query: 496 LGLMCKN 502
+ M K+
Sbjct: 614 IRTMHKD 620
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 122/311 (39%), Gaps = 38/311 (12%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L+ AY L K +S + +L EA P+ TY L+ + L++ EA F E+
Sbjct: 209 YNLLIDAYGQKSLYKKAESTYLELL-EARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEM 267
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ P+ YN I G M K EI++ MK P T TY +L+ Y +
Sbjct: 268 RKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKAS-- 325
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL 372
K ++ K F +R+ C + C+ T
Sbjct: 326 ----------KSYMALKVFHEMRSQKCKPNICTFT------------------------A 351
Query: 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA 432
L+ +A+E E+ E+ I + + V ++ +Y R A +
Sbjct: 352 LVNAFAREGLCEKAEE-IFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHM 410
Query: 433 GWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
G R+ Y+ + Y E+ ++V + M+ I + K+ ++ AY+ G+ K
Sbjct: 411 GCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKC 470
Query: 493 NQVLGLMCKNG 503
+++ M K+G
Sbjct: 471 EEIVNQMHKSG 481
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 20/187 (10%)
Query: 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAA 176
H + A E+MK+LG P + +L Y++ AG++ +
Sbjct: 432 HEDAQAVFEVMKRLGITPTMKSHML-------------LLSAYSR----AGKVAKCEEIV 474
Query: 177 DLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
+ ++ K + N++L Y G +K + + ++K I TYN LI+++
Sbjct: 475 NQMHKSGIKPDTFV--LNSMLNLYGRLGQFEKMEEVLTAMEK-GPYPADISTYNILINIY 531
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
GR ME F+ + NL P+V T+ I Y + + E+++ M PD
Sbjct: 532 GRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDG 591
Query: 297 NTYLLLL 303
T +LL
Sbjct: 592 GTAKVLL 598
>gi|449530353|ref|XP_004172160.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like, partial [Cucumis sativus]
Length = 312
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 74/131 (56%), Gaps = 1/131 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN ++ AY GL + Q++F ++K+ I+P++ ++ L+S + V E +
Sbjct: 103 SYNIMVDAYGRAGLHEDAQAVFEEMKR-IGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQ 161
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ S L P+ F N ++ Y +GK+E+++ M+ GP D +TY +L+ Y +G
Sbjct: 162 MHKSGLKPDTFVMNSMLNLYGRLGQFGKMEDLFSTMQKGPCRADISTYNILINVYGRAGF 221
Query: 312 LPRMEKIYELV 322
+ RME++++L+
Sbjct: 222 VERMEELFQLL 232
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 10/206 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YNAL+ +Y G +F L + P +YN ++ +GR L + +A F+E
Sbjct: 68 AYNALMESYSRAGFPYGAAEIF-SLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEE 126
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K ++P + ++ L++ Y +A K E+I M + PDT +L Y G
Sbjct: 127 MKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQ 186
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ME ++ ++ + +I Y + +R +E L +L+P K P +
Sbjct: 187 FGKMEDLFSTMQKGPCRADISTYNILINVYGRAGFVER---MEELFQLLPAKNLEPDVVT 243
Query: 372 LLIRV--YAKED----CLEEMEKSIN 391
R+ Y+++ CLE EK I+
Sbjct: 244 WTSRIGAYSRKKLYKRCLELFEKMID 269
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 20/187 (10%)
Query: 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAA 176
H + A E MK++G P + +L + ++ G+++ L
Sbjct: 117 HEDAQAVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCED-------IIGQMHKSGLKP 169
Query: 177 DLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
D F N++L Y G K + LF ++K I TYN LI+V+
Sbjct: 170 DTF------------VMNSMLNLYGRLGQFGKMEDLFSTMQK-GPCRADISTYNILINVY 216
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
GR V+ ME FQ + NL P+V T+ I Y ++ + E+++ M PD
Sbjct: 217 GRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKRCLELFEKMIDAGCYPDG 276
Query: 297 NTYLLLL 303
T +LL
Sbjct: 277 GTAKVLL 283
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 101/227 (44%), Gaps = 14/227 (6%)
Query: 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
S Q++F +++ + P+I T+ L++ R L + E F++++++ P+V+ YN
Sbjct: 12 SHMAQNIFDEMRTQ-RCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYN 70
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
L+ Y A EI+ +M+ PD +Y +++ Y +G + ++E +K
Sbjct: 71 ALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRI 130
Query: 326 VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCL 383
P +++ + S S + K E ++ + + +P V+ ++ +Y +
Sbjct: 131 ---GITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLNLYGRLGQF 187
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
+ME D F S R +S+Y V A FV+R E
Sbjct: 188 GKME----DLF----STMQKGPCRADISTYNILINVYGRAGFVERME 226
>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
Length = 691
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 138/344 (40%), Gaps = 10/344 (2%)
Query: 154 MTKEEYTKGIKFAG--RINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQ 210
+T +YT I G + V +A ++ N L T YN L+ Y G +
Sbjct: 336 VTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAF 395
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
S F +K +I P +TYN LI+ + + + + E++D+ ++P V T+N LI
Sbjct: 396 STFGQMKSR-HIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA 454
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
Y K + M+ + P+ +Y ++ + +G +P I + + H
Sbjct: 455 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 514
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEK 388
+ A+I AY + D+ + M+ P + LLI+ + + E E+
Sbjct: 515 AQVYNAIIDAYVEHGPNDQAFILVEKMK---SNGISPSIVTYNLLIKGLCNQSQISEAEE 571
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
IN H+ V I + +R N +DK + +R G + YH +
Sbjct: 572 IINSLSNHRLIPDAVSYNTLISACCYRGN-IDKALDLQQRMHKYGIKSTVRTYHQLISGL 630
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
R+ EME + ++M + S IM AY+ G K
Sbjct: 631 GGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKA 674
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 142/334 (42%), Gaps = 59/334 (17%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN ++ G +F ++ + A + P+ +TYNT+I G + D +EA F+
Sbjct: 202 SYNVVIAGMWRAGRGGDAVEVFDEMTERA-VLPNHITYNTMID--GHIKGGD-LEAGFR- 256
Query: 252 IKDS----NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
++D L PN TYN L++G A G+ + M + ++PD TY +L G +
Sbjct: 257 LRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLS 316
Query: 308 HSGNLPRMEKIY-ELVKHHVDGKEF--PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE 364
+G+ M ++ + +K+ V ++ ++ +C K S+ + + + L+P
Sbjct: 317 RNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPT-- 374
Query: 365 YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
R N LI Y + E+E + + + K+ R I + NA L N
Sbjct: 375 -RVIYNT-LINGYCQTG---ELEGAFSTFGQMKS--------RHIKPDHITYNA---LIN 418
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
+ +AE R+ + +L EM++ ++ + +TF + AY
Sbjct: 419 GLCKAE----------------------RITNAQDLLMEMQDNGVNPTVETFNTLIDAYG 456
Query: 485 TCGQRRKVNQVLGLMCKNG-------YDVPVNAF 511
GQ K VL M +NG Y VNAF
Sbjct: 457 RTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 490
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN L+ A Y G DK L + + K I ++ TY+ LIS G ++ ME +Q+
Sbjct: 587 SYNTLISACCYRGNIDKALDLQQRMHKYG-IKSTVRTYHQLISGLGGAGRLNEMEYLYQK 645
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
+ +N+ P+ +N ++ Y K E++ + M
Sbjct: 646 MMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 681
>gi|168036199|ref|XP_001770595.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678116|gb|EDQ64578.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 743
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 76/140 (54%), Gaps = 1/140 (0%)
Query: 173 DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
++ A L+ H ++ YN +L AY G DK + + ++K + + + +YN L
Sbjct: 588 NMEATLWEMQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIARMEK-SGLQMDLASYNIL 646
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I+++GR + MEA F ++++ P+ +TYN +I Y A K + ++MM+ +
Sbjct: 647 INIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTYGYADYPDKAVDTFKMMQDSGI 706
Query: 293 MPDTNTYLLLLRGYAHSGNL 312
MPD TY++L+ + +GNL
Sbjct: 707 MPDRVTYVMLVAAFEKAGNL 726
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/337 (20%), Positives = 139/337 (41%), Gaps = 42/337 (12%)
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G+ + ++FRD++ A + PS+ T T+I+V G V E F+ ++ S ++
Sbjct: 374 GMFEDATNVFRDMQS-AGVVPSLETSCTMINVHGLKGDVKQAEELFRSLRSSVSKLDIIA 432
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNLPR-------- 314
YN +I YM M + IY++M+ ++PD+ TY +LR NL
Sbjct: 433 YNVIINVYMRYGMHEEAFRIYKLMEEEDGLLPDSYTYHSMLR-MCQKCNLQTQAEEIYWR 491
Query: 315 -------------------------MEKIYELVKHHVDGKEFP---LIRAMICAYSKCSV 346
+E+++++ + +D P MI Y K +
Sbjct: 492 LRNSDVELDEVMCNCVLNTCARFLPLEEVHKIFQEMIDVGCIPNTITFNVMIDLYGKSGM 551
Query: 347 TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIM 406
DR + L + + + + LI Y K+ ME ++ + ++ ++
Sbjct: 552 LDRARDASKLAQQLGVADKITFST--LINSYGKKQDFRNMEATLWE-MQNAGHGGSLEAY 608
Query: 407 RCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466
C++ +Y + +DKL + + R E +G ++ + Y+ + +Y ++ EME++ +M+
Sbjct: 609 NCVLDAYGKAGHLDKLEDVIARMEKSGLQMDLASYNILINIYGRHTKIAEMEALFHKMQE 668
Query: 467 YKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ T+ M Y K +M +G
Sbjct: 669 EGFIPDRWTYNTMIRTYGYADYPDKAVDTFKMMQDSG 705
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/227 (17%), Positives = 97/227 (42%), Gaps = 39/227 (17%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-- 224
G++ + ++A F+ ++ + Y+A++ Y G +K + + D+ I+P
Sbjct: 95 GKVEDAEVA---FSHMLQSGIQVVAAYSAMIAIYTRCGFFEKAEKIMEDMWNH-KIAPDR 150
Query: 225 ---------------------------------SIVTYNTLISVFGRLLLVDHMEAAFQE 251
+V YN++I+ +G+ L + F++
Sbjct: 151 DNWLKQMNTYGQQGKIEEAEHIMDTMERLGMHLGVVGYNSMITAYGKAGLYEKALRLFEK 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K++ L P+ TY+ +I A + +Q MK +MP ++ + L+ Y + N
Sbjct: 211 MKEAGLEPDEVTYSCMIGACGRAGKLRDALDYFQAMKRLGIMPASSNFNTLISLYGKARN 270
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
+ + ++ +K+ + + A++ AY + T ++ ++ +L+R
Sbjct: 271 VVGIVRVLADMKNFGCTPDSQTLDAVVRAYERAGQTKKVVQVLSLLR 317
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/328 (19%), Positives = 129/328 (39%), Gaps = 46/328 (14%)
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+++ ++ +YN + + G ++ ++ P+ +T+N LI A
Sbjct: 1 MQENGKTRGNVYSYNIMFKILGSRQQWPIIDELLGQMLGDGCVPDDYTFNTLIMSASKAD 60
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLI 334
+QMM V P TY +++ Y +G + E + +++ + +
Sbjct: 61 YADYATRAFQMMLEKGVQPTRLTYSMMMLLYQKNGKVEDAEVAFSHMLQSGI--QVVAAY 118
Query: 335 RAMICAYSKCSVTDRIKKIEALM---RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN 391
AMI Y++C ++ +KI M ++ P+++ WL + Y ++ +EE E I
Sbjct: 119 SAMIAIYTRCGFFEKAEKIMEDMWNHKIAPDRD--NWLKQM--NTYGQQGKIEEAEH-IM 173
Query: 392 DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW----------------- 434
D E V ++++Y + +K ++ + AG
Sbjct: 174 DTMERLGMHLGVVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRA 233
Query: 435 --------------RL----CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476
RL S +++ + +Y R V + VL +M+N+ +T
Sbjct: 234 GKLRDALDYFQAMKRLGIMPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCTPDSQTL 293
Query: 477 WIMYYAYATCGQRRKVNQVLGLMCKNGY 504
+ AY GQ +KV QVL L+ + G+
Sbjct: 294 DAVVRAYERAGQTKKVVQVLSLLREAGW 321
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 66/128 (51%), Gaps = 2/128 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ Y +G+ D+ + + L ++ ++ I T++TLI+ +G+ +MEA E
Sbjct: 538 TFNVMIDLYGKSGMLDRARDASK-LAQQLGVADKI-TFSTLINSYGKKQDFRNMEATLWE 595
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++++ ++ YN ++ Y A K+E++ M+ + D +Y +L+ Y
Sbjct: 596 MQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIARMEKSGLQMDLASYNILINIYGRHTK 655
Query: 312 LPRMEKIY 319
+ ME ++
Sbjct: 656 IAEMEALF 663
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 94/236 (39%), Gaps = 55/236 (23%)
Query: 142 NWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYM 201
NW ++ YG G+I + D E HL +G YN+++ AY
Sbjct: 152 NWLKQMNTYGQQ-------------GKIEEAEHIMDTM-ERLGMHLGVVG-YNSMITAYG 196
Query: 202 YNGLSDKCQSLFRDLKKEANISPSIVTY-------------------------------- 229
GL +K LF +K EA + P VTY
Sbjct: 197 KAGLYEKALRLFEKMK-EAGLEPDEVTYSCMIGACGRAGKLRDALDYFQAMKRLGIMPAS 255
Query: 230 ---NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
NTLIS++G+ V + ++K+ +P+ T + ++ Y A KV ++ +
Sbjct: 256 SNFNTLISLYGKARNVVGIVRVLADMKNFGCTPDSQTLDAVVRAYERAGQTKKVVQVLSL 315
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPR--MEKIYELVKHHVDGKEFPLIRAMICA 340
++ + DT +Y LL Y NL + + + K + KE+ + R++ICA
Sbjct: 316 LREAGWVEDTESYGTLLHVYLKC-NLQKEALSVFSAMRKAGMAPKEY-MCRSLICA 369
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 66/356 (18%), Positives = 143/356 (40%), Gaps = 40/356 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T +A++ AY G + K + L +EA +Y TL+ V+ + L + F
Sbjct: 292 TLDAVVRAYERAGQTKKVVQVL-SLLREAGWVEDTESYGTLLHVYLKCNLQKEALSVFSA 350
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + ++P + LI A M+ +++ M++ V+P T ++ + G+
Sbjct: 351 MRKAGMAPKEYMCRSLICACKDAGMFEDATNVFRDMQSAGVVPSLETSCTMINVHGLKGD 410
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR----LIPEK-EYR 366
+ + E+++ ++ V + +I Y + + + +I LM L+P+ Y
Sbjct: 411 VKQAEELFRSLRSSVSKLDIIAYNVIINVYMRYGMHEEAFRIYKLMEEEDGLLPDSYTYH 470
Query: 367 PWLNVLL---IRVYAKE-----------------DC----------LEEMEKSINDAFEH 396
L + ++ A+E +C LEE+ K + +
Sbjct: 471 SMLRMCQKCNLQTQAEEIYWRLRNSDVELDEVMCNCVLNTCARFLPLEEVHKIFQEMIDV 530
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV-MYASQRRVE 455
T+ ++ Y + +D+ + K A+ G + + S ++ Y ++
Sbjct: 531 GCIPNTI-TFNVMIDLYGKSGMLDRARDASKLAQQLG--VADKITFSTLINSYGKKQDFR 587
Query: 456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
ME+ L EM+N S + + + AY G K+ V+ M K+G + + ++
Sbjct: 588 NMEATLWEMQNAGHGGSLEAYNCVLDAYGKAGHLDKLEDVIARMEKSGLQMDLASY 643
>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 829
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 97/448 (21%), Positives = 171/448 (38%), Gaps = 47/448 (10%)
Query: 56 HTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFR 115
H V LVR+L Y A D L+D +L +V + G
Sbjct: 182 HHVIEILVRILGRESQYSVAAKLLDKI----PLQDYML-DVRAYTTILHAYSRTG----- 231
Query: 116 RHSNGYAFVELMKQLGSRPRLA-----LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN 170
++ E MK++G P L L+V R + +E +KG+KF
Sbjct: 232 KYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLEEMRSKGLKF----- 286
Query: 171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
D F T + +L A GL + + F +LK P VTYN
Sbjct: 287 ------DEF------------TCSTVLSACAREGLLREAKDFFAELKS-CGYEPGTVTYN 327
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
L+ VFG+ + + +E++++N + TYN L+A Y A + + +MM
Sbjct: 328 ALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQK 387
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI 350
VMP+ TY ++ Y +G K++ +K A++ K S ++ +
Sbjct: 388 GVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEM 447
Query: 351 KKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT---TVRIMR 407
K+ M+ R N +L K M+K +N F S
Sbjct: 448 IKMLCDMKSNGCFPNRATWNTILALCGNK-----GMDKFVNRVFREMKSCGFEPDRDTFN 502
Query: 408 CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467
++S+Y RC + + AG+ C + Y++ + A + E+V+ +M++
Sbjct: 503 TLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSK 562
Query: 468 KIDCSKKTFWIMYYAYATCGQRRKVNQV 495
++ ++ +M YA G + ++
Sbjct: 563 GFKPTETSYSLMLQCYAKGGNYLGIERI 590
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ Y+ G K + + + L+K + + P +V+YNT+I F R L+ E
Sbjct: 675 TYNSLMDMYVRRGECWKAEEILKTLEK-SQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSE 733
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + + P +FTYN ++GY M+G++E++ + M P+ T+ +++ GY +G
Sbjct: 734 MTERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKNDCRPNELTFKMVVDGYCRAG 792
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 128/317 (40%), Gaps = 13/317 (4%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
T+N +L G+ +FR++K P T+NTLIS +GR +
Sbjct: 464 ATWNTILALCGNKGMDKFVNRVFREMKS-CGFEPDRDTFNTLISAYGRCGSEVDASKMYG 522
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+ + + V TYN L+ W E + MK+ P +Y L+L+ YA G
Sbjct: 523 EMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGG 582
Query: 311 NLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
N +E+I E + +G+ FP L+R ++ A KC + E L + Y+P
Sbjct: 583 NYLGIERIEEGIN---EGQIFPSWMLLRTLLLANFKCRA---LAGSERAFTLFKKHGYKP 636
Query: 368 WLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
+ + ++ ++ + + ++ E + E + V ++ Y R K
Sbjct: 637 DMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLV-TYNSLMDMYVRRGECWKAEEI 695
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
+K E + + Y++ + + + ++E +L EM I T+ Y
Sbjct: 696 LKTLEKSQLKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTA 755
Query: 486 CGQRRKVNQVLGLMCKN 502
G ++ V+ M KN
Sbjct: 756 MGMYGEIEDVIECMAKN 772
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/355 (18%), Positives = 157/355 (44%), Gaps = 13/355 (3%)
Query: 163 IKFAGRINNVDLAADLFAEAA-NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
++ GR + +AA L + ++ + Y +L AY G +K +LF +K E
Sbjct: 189 VRILGRESQYSVAAKLLDKIPLQDYMLDVRAYTTILHAYSRTGKYEKAINLFERMK-EMG 247
Query: 222 ISPSIVTYNTLISVFGRLLLV-DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
SP++VTYN ++ VFG++ + +E++ L + FT + +++ + +
Sbjct: 248 PSPTLVTYNVILDVFGKMGRSWRKILGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREA 307
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340
++ + +K+ P T TY LL+ + +G + + ++ + + ++ A
Sbjct: 308 KDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAA 367
Query: 341 YSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDAFEH 396
Y++ + K+ ++ ++ +K P N + +I Y K +E K + + +
Sbjct: 368 YARAGFS---KEAAVVIEMMTQKGVMP--NAITYTTVIDAYGKAGKEDEALK-LFYSMKE 421
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
V ++S + + +++ + +S G R+ +++ + + ++ +
Sbjct: 422 AGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKF 481
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
+ V +EM++ + + TF + AY CG +++ G M + G++ V +
Sbjct: 482 VNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTY 536
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN ++ + GL + + ++ E I P I TYNT +S + + + +E +
Sbjct: 710 SYNTVIKGFCRKGLMQEAVRMLSEMT-ERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIEC 768
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLR 304
+ ++ PN T+ ++ GY A + + + +K P D + L LR
Sbjct: 769 MAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDPCFDDQSIQRLALR 822
>gi|224137116|ref|XP_002327026.1| predicted protein [Populus trichocarpa]
gi|222835341|gb|EEE73776.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/367 (20%), Positives = 159/367 (43%), Gaps = 23/367 (6%)
Query: 110 GSCLFRRHSNG-----YAFVELMKQLGS--RPRLALEVLNW-RRRQAGYGTPMTKEEYTK 161
GS L R + G + ++K+L R + ALEV +W + RQ + ++ +
Sbjct: 86 GSVLNRWENEGKRLTKWELCRVVKELRKYKRYQQALEVYDWMKNRQERF--RLSPSDAAI 143
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
+ ++ V A D F N K Y ALL AY+ N + +K ++LF +++ +
Sbjct: 144 QLDLIAKVRGVSTAEDFFLSLPNT-FKDRRVYGALLNAYVQNRMREKAETLFDEMRDKGY 202
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
++ ++ +N ++++ + D ++ E+ + N+ ++++YN ++ + K+E
Sbjct: 203 VTHAL-PFNVTMTLYMNIKEYDKVDLMISEMNEKNIKLDIYSYNIWLSSCGSQGSADKME 261
Query: 282 EIYQMMKAG-PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340
++Y+ MK+ + P+ T+ + Y G + E V+ + G++ ++
Sbjct: 262 QVYEQMKSDRSINPNWTTFSTMATMYIKMGQFEKAEDCLRRVESRITGRDRIPYHYLLSL 321
Query: 341 YSKCSVTDRIKKI----EALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396
Y + + ++ +++ IP Y +I + D +E EK +
Sbjct: 322 YGNVGNKEEVYRVWNIYKSIFPSIPNLGYHA-----IISSLVRLDDIEGAEKIYEEWLSI 376
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
KTS RI +++Y +D+ +F G + + + + S+RR E
Sbjct: 377 KTSYDP-RIANLFIAAYVYQGNLDEAKSFFDHMLEDGGKPNSNTWEILAQGHISERRTSE 435
Query: 457 MESVLKE 463
S LKE
Sbjct: 436 ALSCLKE 442
>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
Length = 500
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 123/276 (44%), Gaps = 8/276 (2%)
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDK 208
YG P + Y I + N + A ++F K + TY L+ Y +G S
Sbjct: 226 YGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFM 285
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
+F ++ P+I TY L++ F R L + E F++++++ L P+V++YN L+
Sbjct: 286 ALKVFNEMLSH-KCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYSYNALM 344
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
Y A EI+ +M+ PD +Y +L+ Y +G L E ++E +K
Sbjct: 345 EAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNILVDAYGRAGFLNDAEAVFEDMKRV--- 401
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEM 386
P +++ + S S T + K E ++ + + + VL ++ +Y + +M
Sbjct: 402 GITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLNLYGRLGQFGKM 461
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
E+ + E+ + + +++ Y + +DK+
Sbjct: 462 EEVLT-VMENGSCEADISTYNILINRYGQAGFIDKM 496
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 134/326 (41%), Gaps = 44/326 (13%)
Query: 175 AADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F E N L + YN+ + M G +K + +F +K++ PS TY LI
Sbjct: 216 AEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDG-CKPSTETYTMLI 274
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+++G+ F E+ PN+ TY L+ + + K EE+++ M+ +
Sbjct: 275 NLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGLCEKAEEVFEQMQEAGLE 334
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
PD +Y L+ Y+ +G +I+ L++H M C + S
Sbjct: 335 PDVYSYNALMEAYSRAGFPYGAAEIFSLMQH------------MGCEPDRASYN------ 376
Query: 354 EALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVRIMRCIVSS 412
+L+ Y + L + E D + +T T++ ++S+
Sbjct: 377 ------------------ILVDAYGRAGFLNDAEAVFEDM--KRVGITPTMKSHMVLLSA 416
Query: 413 YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS 472
+ + V K + + + +G +L + +S + +Y + +ME VL MEN +
Sbjct: 417 FSKTGNVSKCEDILNQMCKSGLKLDTFVLNSMLNLYGRLGQFGKMEEVLTVMENGSCEAD 476
Query: 473 KKTFWIMYYAYATCGQRRKVNQVLGL 498
T+ I+ Y GQ ++++ GL
Sbjct: 477 ISTYNILINRY---GQAGFIDKMEGL 499
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 68/128 (53%), Gaps = 1/128 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN L+ AY G + +++F D+K+ I+P++ ++ L+S F + V E +
Sbjct: 374 SYNILVDAYGRAGFLNDAEAVFEDMKR-VGITPTMKSHMVLLSAFSKTGNVSKCEDILNQ 432
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ S L + F N ++ Y +GK+EE+ +M+ G D +TY +L+ Y +G
Sbjct: 433 MCKSGLKLDTFVLNSMLNLYGRLGQFGKMEEVLTVMENGSCEADISTYNILINRYGQAGF 492
Query: 312 LPRMEKIY 319
+ +ME ++
Sbjct: 493 IDKMEGLF 500
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 118/301 (39%), Gaps = 10/301 (3%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
D S+ R + ++ ++ YN LI FG+ L E+ + ++ ++ PN TY
Sbjct: 143 DSIISICRWILLRSSFKQDVICYNLLIDAFGQKFLYKEAESTYLQLLEARCIPNEDTYAL 202
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
LI Y + + K E ++ MK + Y + G GN + E+I+ +K
Sbjct: 203 LIKAYCLSGLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDG 262
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDC 382
+I Y K K AL ++ N+ L+ +A+E
Sbjct: 263 CKPSTETYTMLINLYGKDG-----KSFMALKVFNEMLSHKCKPNICTYTALVNAFAREGL 317
Query: 383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYH 442
E+ E+ + + + V ++ +Y R A + G R+ Y+
Sbjct: 318 CEKAEE-VFEQMQEAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYN 376
Query: 443 SKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502
+ Y + + E+V ++M+ I + K+ ++ A++ G K +L MCK+
Sbjct: 377 ILVDAYGRAGFLNDAEAVFEDMKRVGITPTMKSHMVLLSAFSKTGNVSKCEDILNQMCKS 436
Query: 503 G 503
G
Sbjct: 437 G 437
>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Vitis vinifera]
Length = 587
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 133/301 (44%), Gaps = 7/301 (2%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T TY LL AY +GL +K +++F +++K PS V YN I G + D +A
Sbjct: 202 TEDTYALLLKAYCTSGLLEKAEAVFAEMRKYG-FPPSAVVYNAYID--GLMKGGDTQKAV 258
Query: 249 --FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
F+ +K P+ TY LI Y A +++ M++ P+ T+ L+ +
Sbjct: 259 EIFERMKRDRCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAF 318
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
A G + E+I+E ++ + A++ AYS+ +I +LM+ + + R
Sbjct: 319 AREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDR 378
Query: 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
N+ ++ Y + L E +++ + + T++ ++S+Y R V K V
Sbjct: 379 ASYNI-MVDAYGRAG-LHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKCEEIV 436
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
+ +G + + +S + +Y + E+ME VL ME T+ I+ Y
Sbjct: 437 NQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILINIYGRA 496
Query: 487 G 487
G
Sbjct: 497 G 497
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/367 (20%), Positives = 154/367 (41%), Gaps = 30/367 (8%)
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDK 208
YG P + Y I + + A ++F + + TY L+ Y S
Sbjct: 232 YGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKASKSYM 291
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
+F +++ + P+I T+ L++ F R L + E F++++++ L P+V+ YN L+
Sbjct: 292 ALKVFHEMRSQ-KCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALM 350
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
Y A EI+ +M+ PD +Y +++ Y +G + ++E++K
Sbjct: 351 EAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRL--- 407
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEM 386
P +++ + S S ++ K E ++ + + +P VL ++ +Y + E+M
Sbjct: 408 GITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKM 467
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL------ 440
E+ + A E + +++ Y R A F R E L RSL
Sbjct: 468 EEVLT-AMEKGPYPADISTYNILINIYGR-------AGFFARME----ELFRSLPARNLI 515
Query: 441 -----YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQV 495
+ S++ Y+ +++ V +EM + T ++ A + Q ++V V
Sbjct: 516 PDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTV 575
Query: 496 LGLMCKN 502
+ M K+
Sbjct: 576 IRTMHKD 582
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 122/311 (39%), Gaps = 38/311 (12%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L+ AY L K +S + +L EA P+ TY L+ + L++ EA F E+
Sbjct: 171 YNLLIDAYGQKSLYKKAESTYLELL-EARCVPTEDTYALLLKAYCTSGLLEKAEAVFAEM 229
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ P+ YN I G M K EI++ MK P T TY +L+ Y +
Sbjct: 230 RKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINLYGKAS-- 287
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL 372
K ++ K F +R+ C + C+ T
Sbjct: 288 ----------KSYMALKVFHEMRSQKCKPNICTFT------------------------A 313
Query: 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA 432
L+ +A+E E+ E+ I + + V ++ +Y R A +
Sbjct: 314 LVNAFAREGLCEKAEE-IFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHM 372
Query: 433 GWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
G R+ Y+ + Y E+ ++V + M+ I + K+ ++ AY+ G+ K
Sbjct: 373 GCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAKC 432
Query: 493 NQVLGLMCKNG 503
+++ M K+G
Sbjct: 433 EEIVNQMHKSG 443
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 20/187 (10%)
Query: 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAA 176
H + A E+MK+LG P + +L Y++ AG++ +
Sbjct: 394 HEDAQAVFEVMKRLGITPTMKSHML-------------LLSAYSR----AGKVAKCEEIV 436
Query: 177 DLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
+ ++ K + N++L Y G +K + + ++K I TYN LI+++
Sbjct: 437 NQMHKSGIKPDTFV--LNSMLNLYGRLGQFEKMEEVLTAMEK-GPYPADISTYNILINIY 493
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
GR ME F+ + NL P+V T+ I Y + + E+++ M PD
Sbjct: 494 GRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDG 553
Query: 297 NTYLLLL 303
T +LL
Sbjct: 554 GTAKVLL 560
>gi|115444491|ref|NP_001046025.1| Os02g0170000 [Oryza sativa Japonica Group]
gi|49388067|dbj|BAD25179.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535556|dbj|BAF07939.1| Os02g0170000 [Oryza sativa Japonica Group]
Length = 397
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 3/194 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT + R + A ++F E H + YNAL+ AY GL +F L
Sbjct: 120 YTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF-SLM 178
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ P +YN L+ +GR L + EA F+E+K +SP + ++ L+A + +
Sbjct: 179 QHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNA 238
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+ EE+ + + PDT +L YA +G L ME+++ ++ D +
Sbjct: 239 TRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRGDA-DVGTYNVA 297
Query: 338 ICAYSKCSVTDRIK 351
+ AY + R++
Sbjct: 298 VNAYGRAGYVGRME 311
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 126/291 (43%), Gaps = 13/291 (4%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F ++K P+I TY L++ F R L + E F+E++ + P+V+ YN L+ Y
Sbjct: 104 VFNEMKS-IGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAY 162
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
A + EI+ +M+ PD +Y +L+ Y +G E ++E +K
Sbjct: 163 SRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTM 222
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMR---LIPEKEYRPWLNVLLIRVYAKEDCLEEMEK 388
++ A+++ R +++ A + L P+ LN +L YA+ L++ME+
Sbjct: 223 KSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDT---FALNAML-NAYARAGRLDDMER 278
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
+ A E + V V++Y R V ++ + G + ++M Y
Sbjct: 279 -LFAAMERRGDA-DVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAY 336
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
A ++ +++EM + T ++ A C R+V QV ++
Sbjct: 337 ARRKEYGRCVGMVEEMVDAGCYPDAGTARVL---LAACSDERQVEQVTAIV 384
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/301 (19%), Positives = 126/301 (41%), Gaps = 4/301 (1%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
+ T TY LL AY G + + + +++ E I P+ YN + + +
Sbjct: 9 VPTEDTYALLLRAYCNAGSLHRAEGVISEMR-EHGIPPNATVYNAYLDGLLKARCTEKAV 67
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
+Q +K N T+ +I Y A +++ MK+ P+ TY L+ +
Sbjct: 68 EVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAF 127
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
A G + E+++E ++ + A++ AYS+ + +I +LM+ + + R
Sbjct: 128 AREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDR 187
Query: 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
N+ L+ Y + E+ E ++ + + + T++ +++++ R + +
Sbjct: 188 ASYNI-LVDAYGRAGLHEDAE-AVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVM 245
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
+ +G ++ + YA R+++ME + ME + D T+ + AY
Sbjct: 246 AQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMER-RGDADVGTYNVAVNAYGRA 304
Query: 487 G 487
G
Sbjct: 305 G 305
>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Glycine max]
Length = 631
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 84/366 (22%), Positives = 157/366 (42%), Gaps = 16/366 (4%)
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL 212
M E ++ ++ G+ V+ A +F + + + T TYN+++ M G +K L
Sbjct: 151 MAPAELSEIVRILGKAKMVNRALSVFYQVKGRKCRPTASTYNSIILMLMQEGHHEKVHEL 210
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
+ ++ E + P VTY+ LIS F +L D F E+K++ L P Y L+ Y
Sbjct: 211 YNEMCSEVHCFPDTVTYSALISAFAKLNRDDSAIRLFDEMKENGLQPTAKIYTTLMGIYF 270
Query: 273 TAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-DG 328
GKVEE + + M+A + TY L+RG SG R+E Y K+ + DG
Sbjct: 271 KV---GKVEEALGLVKEMRARRCLLTVFTYTELIRGLGKSG---RVEDAYMTYKNMLKDG 324
Query: 329 --KEFPLIRAMICAYSKCS-VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE 385
+ L+ +I + + + D IK + M+L+ N ++ ++ + L E
Sbjct: 325 CKPDVVLMNNLINILGRSNHLRDAIKLFDE-MKLLNCAPNVVTYNTIIKSLFEAKAPLSE 383
Query: 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445
S + + V + ++ Y + N V+K ++ + G+ C + Y S +
Sbjct: 384 -ASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLI 442
Query: 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
+R + + +E++ S + + +M + CG+ + + M K G
Sbjct: 443 NTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCT 502
Query: 506 VPVNAF 511
V A+
Sbjct: 503 PDVYAY 508
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 2/174 (1%)
Query: 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI-GTYNALL 197
E +W R G + Y+ I + N V+ A L E K Y +L+
Sbjct: 383 EASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLI 442
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
D LF++LK+ S + V Y +I FG+ ++ F E+K
Sbjct: 443 NTLGVAKRYDVANELFQELKENCGCSSARV-YAVMIKHFGKCGRLNEAINLFNEMKKLGC 501
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+P+V+ YN L+ G + A + +++ M+ PD N++ ++L G A +G
Sbjct: 502 TPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDINSHNIILNGLARTGG 555
>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1429
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 120/279 (43%), Gaps = 56/279 (20%)
Query: 79 KDLTQTVSALR-DELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRP-RL 136
K LT + LR D+ +A+V D KV + + FV +K +G +
Sbjct: 113 KFLTDRILGLRPDQFVADVLDDSKV------------QMTPTDFCFV--VKWVGQENWQR 158
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL 196
ALEV W + Y +P + T + G+ N LA ++F A + T+ YNA+
Sbjct: 159 ALEVFEWLNLRHWY-SPNARMLATI-LAVLGKANQEALAVEIFIRAESTVDNTVQVYNAM 216
Query: 197 LGAYMYNGLSDKCQSLFRDLKKE------------------------------------- 219
+G Y G +K Q + DL +E
Sbjct: 217 MGVYARTGRFNKVQGML-DLMRERGCEPDLVSFNTLINARLKAGAMTPNVAIELLNEVRR 275
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
+ + P I+TYNTLIS R ++ F +++ P+++TYN +I+ Y GK
Sbjct: 276 SGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSGK 335
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
E++++ +++ PD TY LL +A GN+ ++++I
Sbjct: 336 AEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEI 374
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 11/216 (5%)
Query: 134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGT 192
P +A+E+LN RR +T Y I R +N++ A +F + + + + T
Sbjct: 263 PNVAIELLNEVRRSGLRPDIIT---YNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWT 319
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YNA++ Y G S K + LF++L+ + P VTYN+L+ F R VD ++ E+
Sbjct: 320 YNAMISVYGRCGFSGKAEQLFKELESKGYF-PDAVTYNSLLYAFAREGNVDKVKEICNEM 378
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ TYN +I Y G ++Y+ MK PD TY +L+ G
Sbjct: 379 VQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSL---GKA 435
Query: 313 PRMEKIYELVKHHVDGKEFPLIR---AMICAYSKCS 345
+M + ++ ++ P +R A+IC Y++
Sbjct: 436 NKMVEAANVMSEMLNIGVKPTLRTYSALICGYARAG 471
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 22/198 (11%)
Query: 116 RHSNGYAFVELMKQLGSRPRL-ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDL 174
R + ++LM++ G P L + L R +AG TP ++
Sbjct: 225 RFNKVQGMLDLMRERGCEPDLVSFNTLINARLKAGAMTP-------------------NV 265
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +L E L+ I TYN L+ A ++ +F D++ P + TYN +I
Sbjct: 266 AIELLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHY-CQPDLWTYNAMI 324
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
SV+GR E F+E++ P+ TYN L+ + KV+EI M +
Sbjct: 325 SVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFI 384
Query: 294 PDTNTYLLLLRGYAHSGN 311
D TY ++ Y G
Sbjct: 385 RDEMTYNTIIHMYGKQGQ 402
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 20/207 (9%)
Query: 112 CLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN 171
C +R + A V M++ G RP L++ W Y +++ K ++ RI
Sbjct: 886 CKGKRVRDVEAMVTEMEEAGFRPDLSI----WNSMLRLY---TGIDDFRKTVQIYQRIKE 938
Query: 172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
L D TYN L+ Y + ++ SL ++++ + P + TY +
Sbjct: 939 DGLQPDE------------DTYNTLIVMYCRDHRPEEGCSLMHEMRR-IGLEPKLDTYKS 985
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
LI+ FG+ LV E F+E+ + Y+ ++ Y + K E++ MMK
Sbjct: 986 LIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIYRNSGNHSKAEKLLSMMKDAG 1045
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKI 318
V P T LL+ Y SG EK+
Sbjct: 1046 VEPTIATMHLLMVSYGSSGQPQEAEKV 1072
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/313 (19%), Positives = 137/313 (43%), Gaps = 19/313 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS---VFGRLLLVDHMEAA 248
+NAL+ AY +G ++ +++F + ++ SP++ + N L+ V GRL + +
Sbjct: 772 VWNALIQAYAASGCYEQARAVFNTMMRDGP-SPTVDSINGLLQALIVDGRL---EELYVV 827
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
QEI+D + + ++ + + ++IYQ MKA P + Y +++
Sbjct: 828 TQEIQDMGFQISKSSILLILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCK 887
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR-----LIPEK 363
+ +E + ++ + + +M+ Y+ + D K ++ R L P++
Sbjct: 888 GKRVRDVEAMVTEMEEAGFRPDLSIWNSMLRLYT--GIDDFRKTVQIYQRIKEDGLQPDE 945
Query: 364 EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLA 423
+ L V+ R + E+ M + E K + + +++++ + V
Sbjct: 946 DTYNTLIVMYCRDHRPEEGCSLMHEMRRIGLEPK-----LDTYKSLIAAFGKQQLVVDAE 1000
Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
+ S G +L RS YH M +Y + + E +L M++ ++ + T ++ +Y
Sbjct: 1001 ELFEELLSKGSKLDRSFYHIMMKIYRNSGNHSKAEKLLSMMKDAGVEPTIATMHLLMVSY 1060
Query: 484 ATCGQRRKVNQVL 496
+ GQ ++ +VL
Sbjct: 1061 GSSGQPQEAEKVL 1073
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 2/138 (1%)
Query: 167 GRINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
R NVD ++ E ++ TYN ++ Y G L+RD+K +P
Sbjct: 363 AREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGR-TPD 421
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY LI G+ + E+ + + P + TY+ LI GY A + EE +
Sbjct: 422 AITYTVLIDSLGKANKMVEAANVMSEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFD 481
Query: 286 MMKAGPVMPDTNTYLLLL 303
M+ + PD Y ++L
Sbjct: 482 CMRRSGIRPDQLAYSVML 499
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 99/238 (41%), Gaps = 9/238 (3%)
Query: 74 DARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSR 133
+A R DL+ S LR L +DD K ++ + + Y + +M R
Sbjct: 903 EAGFRPDLSIWNSMLR--LYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHR 960
Query: 134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT- 192
P +++ RR G + Y I G+ V A +LF E +K K +
Sbjct: 961 PEEGCSLMHEMRR---IGLEPKLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSF 1017
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y+ ++ Y +G K + L + K+A + P+I T + L+ +G E +
Sbjct: 1018 YHIMMKIYRNSGNHSKAEKLL-SMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLTNL 1076
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWG-KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
K+ LS + Y+ +I Y+ + ++++ +M K G + PD + +R + S
Sbjct: 1077 KEMGLSLSTLPYSSVIDAYLKNKDYSVGIQKLVEMKKEG-LEPDHRIWTCFIRAASLS 1133
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 113/247 (45%), Gaps = 10/247 (4%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R NV A +F E + L+ + TYN+L+ NG D+ L +D + P++
Sbjct: 311 RDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGL-QDKMSGMGLKPNV 369
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTYN LI+ F + ++ +I L+PNV T+N LI Y A + M
Sbjct: 370 VTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSM 429
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346
M V P+ +TY L+ G+ GN+ K+ + ++ +G + L+ I + C
Sbjct: 430 MLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEG--NGLKADLVTYNILVDALCKK 487
Query: 347 TDRIKKIEAL--MRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHK--TSV 400
+ K + L M L+ +K R + +LI+ + + LEE + +N+ E +
Sbjct: 488 GETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNR 547
Query: 401 TTVRIMR 407
TT I+R
Sbjct: 548 TTYDILR 554
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 86/452 (19%), Positives = 174/452 (38%), Gaps = 77/452 (17%)
Query: 92 LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYG 151
LLAN + +K+ +LD +S + + ++ G + +++L W + G
Sbjct: 116 LLANAKNYNKIRALLDSFAKNAHYSNSTIFHSLSVLGSWGCANSIIVDMLVWAYVKNGE- 174
Query: 152 TPMTKEEYTKGIKFAGRIN---------------NVDLAADLFAEAANKHLK-TIGTYNA 195
+ E + + + R++ + + ++ E + + + T++
Sbjct: 175 MDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDV 234
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
++ G K + D+K SPS++TYNT+I + + + +A +E+
Sbjct: 235 VINGLCKVGKFQKAGDVVEDMKAWG-FSPSVITYNTIIDGYCKAGKMFKADALLKEMVAK 293
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
+ PN T+N LI G+ +++++ M+ + P+ TY L+ G +G L
Sbjct: 294 RIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDE- 352
Query: 316 EKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--- 372
+ D++ M L P NV+
Sbjct: 353 ---------------------------ALGLQDKMSG----MGLKP--------NVVTYN 373
Query: 373 -LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
LI + K+ L+E + ++D + V ++ +Y + +D F+ R+
Sbjct: 374 ALINGFCKKKMLKEAREMLDD-IGKRGLAPNVITFNTLIDAYGKAGRMDDA--FLLRSMM 430
Query: 432 AGWRLCR--SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
+C S Y+ +V + + V+E + KEME + T+ I+ A G+
Sbjct: 431 LDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGET 490
Query: 490 RKVNQVLG---LMCKNG-------YDVPVNAF 511
RK ++L LM K G Y+V + F
Sbjct: 491 RKAVRLLDEMTLMEKKGRRANIVTYNVLIKGF 522
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 101/271 (37%), Gaps = 57/271 (21%)
Query: 89 RDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQA 148
RDE NV KVF + +G N + L+ L S +L E L + + +
Sbjct: 311 RDE---NVTAAKKVFEEMQRQG-----LQPNVVTYNSLINGLCSNGKLD-EALGLQDKMS 361
Query: 149 GYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSD 207
G G Y I + + A ++ + + L + T+N L+ AY G D
Sbjct: 362 GMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMD 421
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP-------- 259
L R + + + P++ TYN LI F R V +E++ + L
Sbjct: 422 DA-FLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNIL 480
Query: 260 ------------------------------NVFTYNYLIAGYMTAWMWGKVEE----IYQ 285
N+ TYN LI G+ GK+EE + +
Sbjct: 481 VDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNK---GKLEEANRLLNE 537
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
M++ G ++P+ TY +L G +P ++
Sbjct: 538 MLEKG-LIPNRTTYDILRDEMMEKGFIPDID 567
>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
Length = 631
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 128/312 (41%), Gaps = 13/312 (4%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L+ Y G D+ +FR LK+E + P+ V+++TL+ ++ A FQE+
Sbjct: 128 YNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEM 187
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ L +V N LI M + + M A D TY +L+ + +G +
Sbjct: 188 LGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQM 247
Query: 313 PRMEKIYELVKHHVDGKEFPLI--RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL- 369
+ EL +H DG + +I + +C R+ + L KE P +
Sbjct: 248 HEVASFMELARH--DGCALSAVNYNFIIQGFIRCG---RLAEATQLFESTMTKESVPDVF 302
Query: 370 --NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
N+L+ +K+ LEE +A E V V ++ ++ + K
Sbjct: 303 TYNLLIALCKSKQ--LEEALTLFQEA-EQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFY 359
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+ AG +Y+ + Q +V+E +L++M I +T+ I+ ++CG
Sbjct: 360 NMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCG 419
Query: 488 QRRKVNQVLGLM 499
+ K G+M
Sbjct: 420 RYEKAYSFFGMM 431
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A LF EA + + TY+ L+ A+ G + K +F +++K A P V YN LI
Sbjct: 319 ALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQK-AGCMPDTVVYNVLI 377
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
S G+ VD +++ + P+ TYN +I + + K + MMK
Sbjct: 378 SCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHS 437
Query: 294 PDTNTYLLLLRG 305
PD TY LL G
Sbjct: 438 PDVVTYNTLLNG 449
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 92/224 (41%), Gaps = 29/224 (12%)
Query: 105 VLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIK 164
V+D SC R+ Y+F +MK+ P + +T G+K
Sbjct: 411 VIDVLSSC--GRYEKAYSFFGMMKRRKHSPDV-----------------VTYNTLLNGLK 451
Query: 165 FAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNG-LSDKCQSLFRDLKKEANI 222
++ D A DLF E ANK + + T+ L+ G + D + R +K
Sbjct: 452 ---KLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKM--GH 506
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
+P+ YN LIS F R VD FQ++ + + P+ TY L+ G+ E
Sbjct: 507 APNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAME 566
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
+ Q M P TY +L+R + +G ++E Y L K +
Sbjct: 567 LLQEMVREGHTPALATYNVLIRSLSMAG---QVEDAYTLFKEMI 607
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 7/160 (4%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L+ G D+ L D+ ++ I P TYN +I V + + F +
Sbjct: 373 YNVLISCLGKQGKVDEALELLEDMNRKG-IMPDCRTYNIVIDVLSSCGRYEKAYSFFGMM 431
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
K SP+V TYN L+ G + +++ M+A MPD T+ L+ A +G
Sbjct: 432 KRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAG-- 489
Query: 313 PRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDR 349
RME E V P + A+I + + D+
Sbjct: 490 -RMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDK 528
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YNAL+ + +G DK LF+D+ E + P +TY L+ F R QE+
Sbjct: 513 YNALISGFCRSGQVDKGYELFQDMI-ECSCFPDSITYTILVLGFSRRGHTSMAMELLQEM 571
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK---AGPVMPDTNTY 299
+P + TYN LI + M G+VE+ Y + K A PD TY
Sbjct: 572 VREGHTPALATYNVLI---RSLSMAGQVEDAYTLFKEMIAKGFNPDMQTY 618
>gi|224063635|ref|XP_002301239.1| predicted protein [Populus trichocarpa]
gi|222842965|gb|EEE80512.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 148/337 (43%), Gaps = 16/337 (4%)
Query: 133 RPRLALEVLNW-RRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG 191
R + ALEV +W RQ +G ++ + + ++ V A D F N K
Sbjct: 116 RYQQALEVYDWMNNRQERFG--LSPSDAAIQLDLIAKVRGVSSAEDFFLRLPNT-FKDRR 172
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y ALL AY+ N + +K +SL +++ + ++ ++ YN +++++ + D ++ E
Sbjct: 173 IYGALLNAYVRNRMREKAESLIDEMRGKDYVTHAL-PYNVMMTLYMNINEYDKVDLIISE 231
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSG 310
+ + N+ ++++YN ++ K+E++++ MK+ G + P+ T+ + Y G
Sbjct: 232 MNEKNIKLDIYSYNIWLSSCGLQGSADKMEQVFEQMKSDGSINPNWTTFSTMATMYIKMG 291
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI----EALMRLIPEKEYR 366
+ E V+ + G++ ++ Y + + ++ +++ IP Y
Sbjct: 292 KFEKAEDCLRRVESRITGRDRIPYHYLLSLYGNVGNKEEVYRVWNIYKSIFPSIPNLGYH 351
Query: 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
++ L+ + D +E EK + KTS RI ++++ +DK +F
Sbjct: 352 AMISSLV-----RMDDIEGAEKIYEEWLSIKTSYDP-RIANLFMAAFVYQGNLDKAESFF 405
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463
G + + + S+RR E S LKE
Sbjct: 406 DHMLEEGGKPNSHSWEILAQGHISERRTSEALSCLKE 442
>gi|168045050|ref|XP_001774992.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673739|gb|EDQ60258.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 385
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 123/286 (43%), Gaps = 21/286 (7%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T + ALL + + K +F ++ P TY +I L
Sbjct: 68 TTAIFTALLTVFTQSNQFKKALEIFESMRLYEGCVPDKYTYTAMIKGCCEAGLYVQARKI 127
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F E+ + P++ TYN LI GY A ++ +VE + M+A V PDT T+ L+R +
Sbjct: 128 FDEMMIEGVKPSIVTYNILIHGYGKAGLFREVERVLSTMEANNVAPDTVTWNTLIRVFGL 187
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ +P ME+ YE + + + ++I AY + ++++ + M+ R
Sbjct: 188 NCKIPEMEQAYEGLLRQGLQPDMVTLNSLISAYGTAGLFEKMESVTQYMQRYNYPMTRIT 247
Query: 369 LNVLLIRVYAKEDCLEEME---KSINDAFEHKTSVTTVRIMRCIVSSYFR------CNAV 419
N+++ Y + +++ME K + F S T ++ S+Y R V
Sbjct: 248 YNIIM-EAYGRAGMVDQMEETWKRMKAEFVKPNSSTFCSML----SAYGRHGYWHNVEKV 302
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+ A + A++A +Y++ + + + E+ME + +EM+
Sbjct: 303 MRQARYFDAADTA-------VYNAAIDAFQRAQNFEDMEKIFEEMK 341
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 3/179 (1%)
Query: 181 EAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
EA N T+ T+N L+ + N + + + L ++ + P +VT N+LIS +G
Sbjct: 167 EANNVAPDTV-TWNTLIRVFGLNCKIPEMEQAYEGLLRQG-LQPDMVTLNSLISAYGTAG 224
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
L + ME+ Q ++ N TYN ++ Y A M ++EE ++ MKA V P+++T+
Sbjct: 225 LFEKMESVTQYMQRYNYPMTRITYNIIMEAYGRAGMVDQMEETWKRMKAEFVKPNSSTFC 284
Query: 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359
+L Y G +EK+ ++ D + + A I A+ + + ++KI M+L
Sbjct: 285 SMLSAYGRHGYWHNVEKVMRQARYF-DAADTAVYNAAIDAFQRAQNFEDMEKIFEEMKL 342
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/292 (18%), Positives = 121/292 (41%), Gaps = 13/292 (4%)
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+F ++ + + + TY L+++ + F + + L P + L+
Sbjct: 19 QVFELVRAQEWYTADLSTYLKLLTMLAKAKQAAEASNVFDCLLEDKLRPTTAIFTALLTV 78
Query: 271 YMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329
+ + + K EI++ M+ +PD TY +++G +G + KI++ + ++G
Sbjct: 79 FTQSNQFKKALEIFESMRLYEGCVPDKYTYTAMIKGCCEAGLYVQARKIFD--EMMIEGV 136
Query: 330 EFPLI--RAMICAYSKCSVTDRIKKIEALMR---LIPEKEYRPWLNVLLIRVYAKEDCLE 384
+ ++ +I Y K + ++++ + M + P+ W LIRV+ +
Sbjct: 137 KPSIVTYNILIHGYGKAGLFREVERVLSTMEANNVAPDT--VTWNT--LIRVFGLNCKIP 192
Query: 385 EMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSK 444
EME++ V + ++S+Y +K+ + + + + + R Y+
Sbjct: 193 EMEQAYEGLLRQGLQPDMV-TLNSLISAYGTAGLFEKMESVTQYMQRYNYPMTRITYNII 251
Query: 445 MVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
M Y V++ME K M+ + + TF M AY G V +V+
Sbjct: 252 MEAYGRAGMVDQMEETWKRMKAEFVKPNSSTFCSMLSAYGRHGYWHNVEKVM 303
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 35/149 (23%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T N+L+ AY GL +K +S+ + +++ N + +TYN ++ +GR +VD ME ++
Sbjct: 212 TLNSLISAYGTAGLFEKMESVTQYMQR-YNYPMTRITYNIIMEAYGRAGMVDQMEETWKR 270
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE----------------------------- 282
+K + PN T+ +++ Y W VE+
Sbjct: 271 MKAEFVKPNSSTFCSMLSAYGRHGYWHNVEKVMRQARYFDAADTAVYNAAIDAFQRAQNF 330
Query: 283 -----IYQMMKAGPVMPDTNTYLLLLRGY 306
I++ MK PD TY +L+ Y
Sbjct: 331 EDMEKIFEEMKLKGHAPDDVTYSILIGAY 359
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDK 208
Y PMT+ Y ++ GR VD + + + +K T+ ++L AY +G
Sbjct: 239 YNYPMTRITYNIIMEAYGRAGMVDQMEETWKRMKAEFVKPNSSTFCSMLSAYGRHGYWHN 298
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
+ + R + ++ YN I F R + ME F+E+K +P+ TY+ LI
Sbjct: 299 VEKVMRQARYFDAADTAV--YNAAIDAFQRAQNFEDMEKIFEEMKLKGHAPDDVTYSILI 356
Query: 269 AGY 271
Y
Sbjct: 357 GAY 359
>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
Length = 595
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 3/194 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT + R + A ++F E H + YNAL+ AY GL +F L
Sbjct: 318 YTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIF-SLM 376
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ P +YN L+ +GR L + EA F+E+K +SP + ++ L+A + +
Sbjct: 377 QHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNA 436
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+ EE+ + + PDT +L YA +G L ME+++ ++ D +
Sbjct: 437 TRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLFAAMERRGDA-DVGTYNVA 495
Query: 338 ICAYSKCSVTDRIK 351
+ AY + R++
Sbjct: 496 VNAYGRAGYVGRME 509
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/285 (22%), Positives = 122/285 (42%), Gaps = 12/285 (4%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K P+I TY L++ F R L + E F+E++ + P+V+ YN L+ Y A +
Sbjct: 307 KSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLP 366
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
EI+ +M+ PD +Y +L+ Y +G E ++E +K +
Sbjct: 367 QGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLL 426
Query: 338 ICAYSKCSVTDRIKKIEALMR---LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAF 394
+ A+++ R +++ A + L P+ LN +L YA+ L++ME+ + A
Sbjct: 427 LAAHARSGNATRCEEVMAQLHKSGLTPDTFA---LNAML-NAYARAGRLDDMER-LFAAM 481
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454
E + V V++Y R V ++ + G + ++M YA ++
Sbjct: 482 ERRGDA-DVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEY 540
Query: 455 EEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
+++EM + T ++ A C R+V QV ++
Sbjct: 541 GRCVGMVEEMVDAGCYPDAGTARVL---LAACSDERQVEQVTAIV 582
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/330 (19%), Positives = 130/330 (39%), Gaps = 39/330 (11%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L+ +Y +K +S++ L EA P+ TY L+ + + E E+
Sbjct: 178 YNLLIESYGKKRQLNKAESIYMALL-EAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEM 236
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM-------------------------- 286
++ + PN YN + G + A K E+YQ
Sbjct: 237 REHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQP 296
Query: 287 ---------MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
MK+ P+ TY L+ +A G + E+++E ++ + A+
Sbjct: 297 MSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNAL 356
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397
+ AYS+ + +I +LM+ + + R N+ L+ Y + E+ E ++ + + +
Sbjct: 357 MEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNI-LVDAYGRAGLHEDAE-AVFEELKQR 414
Query: 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
T++ +++++ R + + + +G ++ + YA R+++M
Sbjct: 415 GMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDM 474
Query: 458 ESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
E + ME + D T+ + AY G
Sbjct: 475 ERLFAAMER-RGDADVGTYNVAVNAYGRAG 503
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 99/252 (39%), Gaps = 8/252 (3%)
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
S+ P++ YN LI Y K E IY + +P +TY LLLR Y ++G+L R
Sbjct: 169 SSFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHR 228
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK-EYRPWLNVLL 373
E + ++ H + A + K T+ K +E R+ E+ L+
Sbjct: 229 AEGVISEMREHGIPPNATVYNAYLDGLLKARCTE--KAVEVYQRMKRERCRANTETFTLM 286
Query: 374 IRVYAKEDCLEEMEKSIND--AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
I VY K K N+ + K ++ T +V+++ R +K + +
Sbjct: 287 INVYGKAKQPMSSMKVFNEMKSIGCKPNICTY---TALVNAFAREGLCEKAEEVFEEMQQ 343
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
AG Y++ M Y+ + + M++ + + ++ I+ AY G
Sbjct: 344 AGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHED 403
Query: 492 VNQVLGLMCKNG 503
V + + G
Sbjct: 404 AEAVFEELKQRG 415
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/284 (18%), Positives = 111/284 (39%), Gaps = 2/284 (0%)
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
++ P I+ YN LI +G+ ++ E+ + + ++ P TY L+ Y A +
Sbjct: 169 SSFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHR 228
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
E + M+ + P+ Y L G + + ++Y+ +K MI
Sbjct: 229 AEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMIN 288
Query: 340 AYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS 399
Y K K+ M+ I K L+ +A+E E+ E+ + + +
Sbjct: 289 VYGKAKQPMSSMKVFNEMKSIGCKP-NICTYTALVNAFAREGLCEKAEE-VFEEMQQAGH 346
Query: 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES 459
V ++ +Y R + + G R+ Y+ + Y E+ E+
Sbjct: 347 EPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEA 406
Query: 460 VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
V +E++ + + K+ ++ A+A G + +V+ + K+G
Sbjct: 407 VFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSG 450
>gi|255555093|ref|XP_002518584.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542429|gb|EEF43971.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 377
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 154 MTKEEYT-KGIKFAGRINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQS 211
+T E++T + I G+ +D A LF E + K +T+ ++NALL A + +G DK Q
Sbjct: 87 ITNEQFTIRLISLYGKAGMLDHAHRLFDEMPDLKCTRTVRSFNALLSACIDSGKFDKVQG 146
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
RD + I+P +V++N +I + + +D E++ + P++ T+N L+ G+
Sbjct: 147 FLRDFPVKLGITPDVVSFNIVIKGYCEIGNLDSGVLVLCEMEKRGIEPDLITFNTLLNGF 206
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ E+I+ +M++ V+P+ +Y LRG
Sbjct: 207 YGNGRFVDGEKIWTLMESKNVVPNVRSYNSRLRG 240
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
LIS++G+ ++DH F E+ D + V ++N L++ + + GK +++ ++ P
Sbjct: 96 LISLYGKAGMLDHAHRLFDEMPDLKCTRTVRSFNALLSACIDS---GKFDKVQGFLRDFP 152
Query: 292 V----MPDTNTYLLLLRGYAHSGNL 312
V PD ++ ++++GY GNL
Sbjct: 153 VKLGITPDVVSFNIVIKGYCEIGNL 177
>gi|297736717|emb|CBI25753.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 120/260 (46%), Gaps = 11/260 (4%)
Query: 95 NVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPM 154
N+D +K+F + E+G + + ++ + ++ S P A+E W + +G
Sbjct: 191 NLDRAEKLFDEMLERG---VKPDNITFSTIISCARVSSLPNKAVE---WFEKMPEFGCHP 244
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLF 213
Y+ I GR NVD+A L+ A + + T++ L+ Y +G D C +++
Sbjct: 245 DDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVY 304
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
++K + P++V YNTL+ GR + ++E+ ++ L P+ TY L+ Y
Sbjct: 305 EEMKA-LGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGR 363
Query: 274 AWMWGKVEEIYQMMK---AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
A +Y+ MK +G MPD+ T+ L+ Y+ SG + E + +
Sbjct: 364 ARYAEDALIVYKEMKEKGSGNCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPN 423
Query: 331 FPLIRAMICAYSKCSVTDRI 350
++ ++I Y K + TD +
Sbjct: 424 IFVLTSLIQCYGKANRTDEV 443
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 97/210 (46%), Gaps = 11/210 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEA-NISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TY+A++ AY G D L+ + E I P VT++TLI ++G D ++
Sbjct: 248 TYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDP--VTFSTLIRIYGMSGNFDGCLNVYE 305
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+K + PN+ YN L+ A + + IY+ M + P TY LLR Y +
Sbjct: 306 EMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRAR 365
Query: 311 NLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
+Y+ +K G P ++I YS CS ++ + EA++ + E + P
Sbjct: 366 YAEDALIVYKEMKEKGSGNCMPDSWTFSSLITIYS-CS--GKVSEAEAMLNAMLEAGFEP 422
Query: 368 WLNVL--LIRVYAKEDCLEEMEKSINDAFE 395
+ VL LI+ Y K + +E+ ++ + E
Sbjct: 423 NIFVLTSLIQCYGKANRTDEVVRTFDRLLE 452
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%)
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
F +K S ++ YN + VF + +D E F E+ + + P+ T++ +I+
Sbjct: 163 FGFFRKRLKPSREVILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCAR 222
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ + K E ++ M PD TY ++ Y +GN+ K+Y+
Sbjct: 223 VSSLPNKAVEWFEKMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYD 270
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 72/174 (41%), Gaps = 23/174 (13%)
Query: 125 ELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAAN 184
E MK LG +P L + Y + GR A +++ E N
Sbjct: 305 EEMKALGVKPNLVI--------------------YNTLLDAMGRAKRPWQAKNIYKEMTN 344
Query: 185 KHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA--NISPSIVTYNTLISVFGRLLL 241
L+ + GTY ALL AY ++ +++++K++ N P T+++LI+++
Sbjct: 345 NGLQPSWGTYAALLRAYGRARYAEDALIVYKEMKEKGSGNCMPDSWTFSSLITIYSCSGK 404
Query: 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
V EA + ++ PN+F LI Y A +V + + + PD
Sbjct: 405 VSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLLELDITPD 458
>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Brachypodium distachyon]
Length = 810
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 109/240 (45%), Gaps = 16/240 (6%)
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQ 210
T MT G AG + + A ++ + K L I TY + + Y G SD
Sbjct: 540 TMMTYNSIINGFVKAGMMGS---AFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMAL 596
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+ D+++ + P IV YN LI+ F + + H + L+PN YN LI G
Sbjct: 597 KMLNDVRRRG-LQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITG 655
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE--LVKHHV-D 327
Y M +V + Y+ M G ++ DT+TY L+ G++ GN+ ++Y + K ++ D
Sbjct: 656 YKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPD 715
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEE 385
F + +C + D KK+ MR + + RP ++ +LI Y ++ L+E
Sbjct: 716 AFTFTALTHGLC---RSGDIDGAKKLLEEMRRL---DVRPNVFIYNMLINGYLRDCKLQE 769
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 8/176 (4%)
Query: 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALL 197
E LN R G + Y + + +D A L++E + K + TY L+
Sbjct: 419 EALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLM 478
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS---VFGRLLLVDHMEAAFQEIKD 254
Y+ D +L ++K+ +S + TYN LI+ + R+ VD M +F
Sbjct: 479 RGYIAKKDFDNAYALLDEMKQNG-VSCNDYTYNVLINGICMVDRVCEVDGMLKSFMS--- 534
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
P + TYN +I G++ A M G +YQ M+ + P+ TY + GY +G
Sbjct: 535 EGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTG 590
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 8/154 (5%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +LF +K +I TYN+LL Y G D+ L+ ++ E P++VTY TL+
Sbjct: 420 ALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEG-FKPNVVTYITLM 478
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK---AG 290
+ D+ A E+K + +S N +TYN LI G M +V E+ M+K +
Sbjct: 479 RGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGI---CMVDRVCEVDGMLKSFMSE 535
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
+P TY ++ G+ +G + +Y+ ++
Sbjct: 536 GFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMRE 569
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 175 AADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234
A LF E A+ L + TYN L+ + + +LF +KK A + PSI TYN+L+
Sbjct: 386 AVCLFEEMADSGLPDVFTYNNLIHWHCQAHKLREALNLFDRMKK-AGVKPSINTYNSLLM 444
Query: 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294
+ + +D + E+ PNV TY L+ GY+ + + MK V
Sbjct: 445 GYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSC 504
Query: 295 DTNTYLLLLRG 305
+ TY +L+ G
Sbjct: 505 NDYTYNVLING 515
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 104/263 (39%), Gaps = 21/263 (7%)
Query: 63 VRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGY- 121
VRL E P A + D Q V AL L + D + R+L E F Y
Sbjct: 212 VRLFDEM---PGAEIDPD--QRVYALAITALCKLGDGGRALRMLREMKEVGFDTCDFTYR 266
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
V+++ + G R AL V + R + +G + N A +LF E
Sbjct: 267 TMVDVLVKTG-RMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGN---ALNLFKE 322
Query: 182 AANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
+ T Y L+ G++ K L R + + + PS +S+ + L
Sbjct: 323 TLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQG-LLPSTFE----LSLVLKGL 377
Query: 241 LVDH----MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
L D F+E+ DS L P+VFTYN LI + A + ++ MK V P
Sbjct: 378 LNDRRWKDAVCLFEEMADSGL-PDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSI 436
Query: 297 NTYLLLLRGYAHSGNLPRMEKIY 319
NTY LL GY G + K+Y
Sbjct: 437 NTYNSLLMGYCKKGCMDEAVKLY 459
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ + +G L+ ++ + I P T+ L R +D + +E
Sbjct: 683 TYTTLIDGFSKDGNVAFALELYSEMMAKGYI-PDAFTFTALTHGLCRSGDIDGAKKLLEE 741
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
++ ++ PNVF YN LI GY+ + ++ M + PD TY +L+
Sbjct: 742 MRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDDTTYDILV 793
>gi|302798857|ref|XP_002981188.1| hypothetical protein SELMODRAFT_420654 [Selaginella moellendorffii]
gi|300151242|gb|EFJ17889.1| hypothetical protein SELMODRAFT_420654 [Selaginella moellendorffii]
Length = 796
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 139/323 (43%), Gaps = 19/323 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNTLISVFGRLLLVDHMEAAFQ 250
+++ LL Y Q + DLK A+ P + V YNTLI V+G+ +D ++
Sbjct: 137 SFSILLNTYGRGKDFQAVQRVLSDLK--ADKCPMTTVAYNTLIKVYGKAHKLDEAWGYYK 194
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E++DS P++FT+N L++ Y A KV E+Y M+ D Y +++ H+G
Sbjct: 195 EMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEVYDEMQKIGCSLDRVGYEVVV---PHAG 251
Query: 311 NLPRME---KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
+ R++ ++E +K A+I K + K MR + E RP
Sbjct: 252 KVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQLKSGRLEIGTKYFEEMRSL---EIRP 308
Query: 368 WLNVL--LIRVYAKEDCLEEMEKSIND--AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLA 423
L LI Y K LE K D AF +K ++ I +V ++ + +D
Sbjct: 309 LLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYKPNLC---IYAALVDAHAKAGMLDAAL 365
Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
F +R G L ++ + +A + E + +EM + S T I+ A
Sbjct: 366 EFYERMRGVGLWLPPLIFAVLIEQHAQAGKAETAVRLYREMRGVGLRPSHFTCRIVVGAV 425
Query: 484 ATCGQRRKVNQVLGLMCKNGYDV 506
A G+ V ++L M + G +V
Sbjct: 426 AKGGKYDDVERILFEMQEMGLNV 448
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/375 (20%), Positives = 153/375 (40%), Gaps = 35/375 (9%)
Query: 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQS 211
PMT Y IK G+ + +D A + E + + I T+N L+ Y Y G S+K
Sbjct: 167 PMTTVAYNTLIKVYGKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLE 226
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
++ +++K S V Y ++ G++ +D F+ +K PN Y+ LIAG
Sbjct: 227 VYDEMQK-IGCSLDRVGYEVVVPHAGKVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQ 285
Query: 272 MTAWMWGKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
+ + G++E + ++ M++ + P T+ L+ Y SG L K ++ ++
Sbjct: 286 LKS---GRLEIGTKYFEEMRSLEIRPLLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYK 342
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEK 388
+ A++ A++K + D + MR + WL L+ V ++
Sbjct: 343 PNLCIYAALVDAHAKAGMLDAALEFYERMRGVGL-----WLPPLIFAVLIEQHA------ 391
Query: 389 SINDAFEHKTSVTTVRIMRCIV--SSYFRCNAV----------DKLANFVKRAESAGWRL 436
A + +T+V R MR + S+F C V D + + + G +
Sbjct: 392 ---QAGKAETAVRLYREMRGVGLRPSHFTCRIVVGAVAKGGKYDDVERILFEMQEMGLNV 448
Query: 437 CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
++ S +V +R+ + + ++ + + + + +CG Q+L
Sbjct: 449 ADAVNDS-IVKLVDDKRISDAWELFLKVTGHGFTPHVSLCREILHGFLSCGDMEHARQML 507
Query: 497 GLMCKNGYDVPVNAF 511
M + G V + +
Sbjct: 508 SFMQRPGSAVDLRTY 522
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 126/294 (42%), Gaps = 24/294 (8%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKC 209
G + + Y + AG++ +DLA LF A H Y+AL+ + +G +
Sbjct: 235 GCSLDRVGYEVVVPHAGKVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQLKSGRLEIG 294
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
F +++ I P + T+ +LI + + ++ F++++ N PN+ Y L+
Sbjct: 295 TKYFEEMRS-LEIRPLLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYKPNLCIYAALVD 353
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329
+ A M E Y+ M+ + + +L+ +A +G ++Y ++
Sbjct: 354 AHAKAGMLDAALEFYERMRGVGLWLPPLIFAVLIEQHAQAGKAETAVRLYREMRGVGLRP 413
Query: 330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM--E 387
R ++ A +K D +++I M+ + LNV A D + ++ +
Sbjct: 414 SHFTCRIVVGAVAKGGKYDDVERILFEMQEMG-------LNV----ADAVNDSIVKLVDD 462
Query: 388 KSINDAFEHKTSVTT------VRIMRCIVSSYFRCNAVD---KLANFVKRAESA 432
K I+DA+E VT V + R I+ + C ++ ++ +F++R SA
Sbjct: 463 KRISDAWELFLKVTGHGFTPHVSLCREILHGFLSCGDMEHARQMLSFMQRPGSA 516
>gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa]
gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa]
Length = 700
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 91/412 (22%), Positives = 174/412 (42%), Gaps = 37/412 (8%)
Query: 51 CAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSAL-------------RDELLANVD 97
C+P VF L + + L + +++ +AL R+ ++ NV
Sbjct: 123 CSPNKDDVFNVLSKFDGKLLEQDAVVILNNMSNPDTALLALKFFQERLKFNREVVVYNVT 182
Query: 98 --------DLDKVFRVLDEKGSCLFRR--HSNGYAFVELMKQLGSRPRLALEVLNWRRRQ 147
DLDK ++ DE + R + + F ++ LA + + W +
Sbjct: 183 LKVFRKGRDLDKAEKLFDE----MLERGVKPDNFTFSTII-SCARLCNLADKAVEWFEKM 237
Query: 148 AGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLS 206
+G + I GR NV+ A L+ A + T ++ L+ Y G
Sbjct: 238 PSFGLEPDDVTLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKVAGNF 297
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
D C +++ ++K + P++V YN L+ GR ++ +Q+I D+ LSP+ TY
Sbjct: 298 DGCLNVYEEMKA-LGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTYAA 356
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
L+ Y A +IY+ MK + + Y +L A G++ + +I+E +K
Sbjct: 357 LLHAYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSSG 416
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLE 384
+ +MI +S C ++ + E + + E ++P + +L LI+ Y K ++
Sbjct: 417 IKPDSWTFSSMITIFSCCG---KVSEAENTLNEMFEAGFQPNIFILTSLIQCYGKAQRID 473
Query: 385 EMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL 436
++ + N FE + R C+++ + ++L+ VK AE A +L
Sbjct: 474 DVVNTFNRIFELVITPDD-RFCGCLLNVMTQ-TPNEELSKLVKCAERANPKL 523
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 116/282 (41%), Gaps = 8/282 (2%)
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+V YN + VF + +D E F E+ + + P+ FT++ +I+ + K E ++
Sbjct: 176 VVVYNVTLKVFRKGRDLDKAEKLFDEMLERGVKPDNFTFSTIISCARLCNLADKAVEWFE 235
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH---HVDGKEFPLIRAMICAYS 342
M + + PD T ++ Y +GN+ + +Y+ + +D F +I Y
Sbjct: 236 KMPSFGLEPDDVTLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATAF---STLIRIYK 292
Query: 343 KCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTT 402
D + M+ + K N+LL + +++K D ++ S +
Sbjct: 293 VAGNFDGCLNVYEEMKALGVKPNLVIYNILL-DAMGRAKRPWQVKKFYQDIIDNGLSPSF 351
Query: 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
V ++ +Y R + + + G L LY+S + M A V++ + +
Sbjct: 352 V-TYAALLHAYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFE 410
Query: 463 EMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
+M++ I TF M ++ CG+ + L M + G+
Sbjct: 411 DMKSSGIKPDSWTFSSMITIFSCCGKVSEAENTLNEMFEAGF 452
>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 82/379 (21%), Positives = 150/379 (39%), Gaps = 37/379 (9%)
Query: 125 ELMKQLGSRPRLA-----LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF 179
E MK++G P L L+V R + E +KG+KF D F
Sbjct: 234 ERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKF-----------DEF 282
Query: 180 AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
T + +L A GL + + F +LK P VTYN L+ VFG+
Sbjct: 283 ------------TCSTVLSACAREGLLREAKEFFAELKS-CGYEPGTVTYNALLQVFGKA 329
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
+ + +E+++++ + TYN L+A Y+ A + + +MM VMP+ TY
Sbjct: 330 GVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITY 389
Query: 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359
++ Y +G K++ +K A++ K S ++ + K+ M+
Sbjct: 390 TTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKS 449
Query: 360 IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT---TVRIMRCIVSSYFRC 416
R N +L K M+K +N F S ++S+Y RC
Sbjct: 450 NGCSPNRATWNTMLALCGNK-----GMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRC 504
Query: 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476
+ + AG+ C + Y++ + A + E+V+ +M++ ++ ++
Sbjct: 505 GSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSY 564
Query: 477 WIMYYAYATCGQRRKVNQV 495
+M YA G + ++
Sbjct: 565 SLMLQCYAKGGNYLGIERI 583
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ Y+ G K + + + L+K + + P +V+YNT+I F R L+ E
Sbjct: 668 TYNSLMDMYVRRGECWKAEEILKTLEK-SQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSE 726
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + + P +FTYN ++GY M+ ++E++ + M P+ T+ +++ GY +G
Sbjct: 727 MTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAG 785
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 128/317 (40%), Gaps = 13/317 (4%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
T+N +L G+ +FR++K P T+NTLIS +GR +
Sbjct: 457 ATWNTMLALCGNKGMDKFVNRVFREMKS-CGFEPDRDTFNTLISAYGRCGSEVDASKMYG 515
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+ + + V TYN L+ W E + MK+ P +Y L+L+ YA G
Sbjct: 516 EMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGG 575
Query: 311 NLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
N +E+I +K +G+ FP L+R ++ A KC + E L + Y+P
Sbjct: 576 NYLGIERIENRIK---EGQIFPSWMLLRTLLLANFKCRA---LAGSERAFTLFKKHGYKP 629
Query: 368 WLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
+ + ++ ++ + + ++ E + E S V ++ Y R K
Sbjct: 630 DMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLV-TYNSLMDMYVRRGECWKAEEI 688
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
+K E + + Y++ + + + ++E +L EM I T+ Y
Sbjct: 689 LKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTA 748
Query: 486 CGQRRKVNQVLGLMCKN 502
G ++ V+ M KN
Sbjct: 749 MGMFAEIEDVIECMAKN 765
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/355 (18%), Positives = 155/355 (43%), Gaps = 13/355 (3%)
Query: 163 IKFAGRINNVDLAADLFAEAA-NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
++ GR + +AA L + ++L + Y +L AY G +K LF +K E
Sbjct: 182 VRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMK-EMG 240
Query: 222 ISPSIVTYNTLISVFGRLLLV-DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
SP++VTYN ++ VFG++ + E++ L + FT + +++ + +
Sbjct: 241 PSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREA 300
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340
+E + +K+ P T TY LL+ + +G + + ++ + + ++ A
Sbjct: 301 KEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAA 360
Query: 341 YSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDAFEH 396
Y + + K+ ++ ++ +K P N + +I Y K +E K + + +
Sbjct: 361 YVRAGFS---KEAAGVIEMMTKKGVMP--NAITYTTVIDAYGKAGKEDEALK-LFYSMKE 414
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
V ++S + + +++ + +S G R+ +++ + + ++ +
Sbjct: 415 AGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKF 474
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
+ V +EM++ + + TF + AY CG +++ G M + G++ V +
Sbjct: 475 VNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTY 529
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 72/152 (47%), Gaps = 3/152 (1%)
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
L K+ P +V +N+++S+F R + D E + I++ LSP++ TYN L+ Y+
Sbjct: 621 LFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRG 680
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
K EEI + ++ + PD +Y +++G+ G M++ ++ + P I
Sbjct: 681 ECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRG---LMQEAVRMLSEMTERGIRPCIF 737
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
S + +IE ++ + + + RP
Sbjct: 738 TYNTFVSGYTAMGMFAEIEDVIECMAKNDCRP 769
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN ++ + GL + + ++ E I P I TYNT +S + + + +E +
Sbjct: 703 SYNTVIKGFCRRGLMQEAVRMLSEMT-ERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIEC 761
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLR 304
+ ++ PN T+ ++ GY A + + + +K P D + L LR
Sbjct: 762 MAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDPCFDDQSIQRLALR 815
>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
Length = 816
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/388 (18%), Positives = 150/388 (38%), Gaps = 50/388 (12%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
G+ D + AE + YN ++ + G +K LF+++ + I P +
Sbjct: 198 GKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRG-IPPDL 256
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTY++++ + +D EA +++ + + P+ +TYN LI GY + W + +++
Sbjct: 257 VTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKE 316
Query: 287 MKAGPVMPDT---NT--------------------------------YLLLLRGYAHSGN 311
M+ ++PD NT Y ++L GYA G
Sbjct: 317 MRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGC 376
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP---- 367
L M +++L+ + +I AY+ C + D+ I MR + +P
Sbjct: 377 LVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMR---DHGVKPHVVT 433
Query: 368 WLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
++ V+ L R+ +D +E+ + I+ V C++ + ++ K
Sbjct: 434 YMTVIAALCRIGKMDDAMEKFNQMIDQGV-----VPDKYAYHCLIQGFCTHGSLLKAKEL 488
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
+ + G RL + S + RV + +++ N + + ++ Y
Sbjct: 489 ISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCL 548
Query: 486 CGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
G+ K +V M G + V + +
Sbjct: 549 VGKMEKALRVFDAMVSAGIEPNVVGYGT 576
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YN L+ Y G +K +F D A I P++V Y TL++ + ++ +D + F+E
Sbjct: 538 VYNMLMDGYCLVGKMEKALRVF-DAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFRE 596
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAW--MWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ + P+ YN +I G A + KV + ++M ++G M + TY ++LRG
Sbjct: 597 MLQKGIKPSTILYNIIIDGLFEAGRTVPAKV-KFHEMTESGIAM-NKCTYSIVLRG 650
Score = 45.4 bits (106), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 62/303 (20%), Positives = 117/303 (38%), Gaps = 59/303 (19%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +L +E N ++ I + +++ G Q++F DL + P V YN L+
Sbjct: 485 AKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIF-DLTVNVGLHPDAVVYNMLM 543
Query: 234 SVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMM 287
+ LV ME A F + + + PNV Y L+ GY G+++E +++ M
Sbjct: 544 DGY---CLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCK---IGRIDEGLSLFREM 597
Query: 288 KAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346
+ P T Y +++ G +G +P K +E+ + + A +KC+
Sbjct: 598 LQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGI-------------AMNKCTY 644
Query: 347 TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE---MEKSINDAFEHKTSVTTV 403
+ +++R K C +E + K + A K + T+
Sbjct: 645 S------------------------IVLRGLFKNRCFDEAIFLFKELR-AMNVKIDIITL 679
Query: 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463
M ++ F+ V++ + +G C Y + + VEE E +
Sbjct: 680 NTM---IAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSS 736
Query: 464 MEN 466
M+N
Sbjct: 737 MQN 739
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ +L N D+ LF++L+ N+ I+T NT+I+ + V+ + F
Sbjct: 643 TYSIVLRGLFKNRCFDEAIFLFKELRA-MNVKIDIITLNTMIAGMFQTRRVEEAKDLFAS 701
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
I S L P TY+ +I + + + E+++ M+ PD+
Sbjct: 702 ISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDS 746
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 50/250 (20%), Positives = 100/250 (40%), Gaps = 10/250 (4%)
Query: 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM--PDTNTYLLLLRGYAHSGNLPRME 316
P+VF+YN L+ G+ +++ +MM G + PD Y ++ G+ G++ +
Sbjct: 182 PDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKAC 241
Query: 317 KIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLL 373
++ E+V+ + + +++ A K D K EA +R + K P W L
Sbjct: 242 DLFKEMVQRGIP-PDLVTYSSVVHALCKARAMD---KAEAFLRQMVNKGVLPDNWTYNNL 297
Query: 374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
I Y+ +E + + ++ + V + ++ S + + + + G
Sbjct: 298 IYGYSSTGQWKEAVRVFKE-MRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKG 356
Query: 434 WRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVN 493
Y + YA++ + +M + M I TF ++ AYA CG K
Sbjct: 357 QNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAM 416
Query: 494 QVLGLMCKNG 503
+ M +G
Sbjct: 417 IIFNEMRDHG 426
>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 894
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/373 (23%), Positives = 156/373 (41%), Gaps = 18/373 (4%)
Query: 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALL 197
E L + G YT I + ++ +D ++ + K L ++ +NAL+
Sbjct: 313 EALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALI 372
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
Y G+ + + D K + P+ TYN LI F R +D A ++ ++ L
Sbjct: 373 DGYCKRGMMEDAICVL-DSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKL 431
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
SPN+ TYN LI G A + ++ +M +PD T+ + G + + +
Sbjct: 432 SPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQ 491
Query: 318 IYELVKH-HVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP---WLNVLL 373
++E +K H + EF L A+I Y K ++ L + + + P NVLL
Sbjct: 492 VFESLKEKHAEANEF-LYTALIDGYCK---AEKFSDAHLLFKRMLFEGCFPNSITFNVLL 547
Query: 374 --IRVYAK-EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
+R K ED + ++ + F+ K +V T I+ + R + D+ F+ +
Sbjct: 548 DGLRKEGKVEDAMSLVD--VMGKFDAKPTVHTYTIL---IEEILRESDFDRANMFLDQMI 602
Query: 431 SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRR 490
S+G + Y + + Y Q R+ E E ++ +++ I + ++ AY GQ
Sbjct: 603 SSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQLD 662
Query: 491 KVNQVLGLMCKNG 503
VL M G
Sbjct: 663 SAFGVLIRMFDTG 675
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/226 (19%), Positives = 100/226 (44%), Gaps = 5/226 (2%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ +YN L GL D+ LF+D+ + + P+++++NT+++ ++ V +A
Sbjct: 154 SVTSYNRLFMVLSRFGLIDELNCLFKDMLNDG-VEPNLISFNTMVNAHCKIGNVVVAKAY 212
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F + + FTY LI GY G +++++M + + +Y L+ G+
Sbjct: 213 FCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCE 272
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK-EYRP 367
G + +++ +K + P ++ A+ C V + ++ ++ E
Sbjct: 273 VGKIDEALELFFQMKEDGCFPDVPTYTVLVAAF--CEVGKETEALKFFEEMVENGIEPNV 330
Query: 368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY 413
+ +LI + K ++E + ++ E K V++V ++ Y
Sbjct: 331 YTYTVLIDYFCKVGKMDEGMEMLSTMLE-KGLVSSVVPFNALIDGY 375
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 6/167 (3%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I + +D A +LF + + + TY L+ A+ G + F ++
Sbjct: 263 YTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMV 322
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E I P++ TY LI F ++ +D + + L +V +N LI GY M
Sbjct: 323 -ENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGYCKRGMM 381
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR----MEKIYE 320
+ MK V P++ TY L+ G+ ++ R + K+YE
Sbjct: 382 EDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYE 428
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM-- 272
+L S S+ +YN L V R L+D + F+++ + + PN+ ++N ++ +
Sbjct: 144 NLLTHHEFSLSVTSYNRLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKI 203
Query: 273 ------TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
A+ G +MK G D+ TY L+ GY L K++E++
Sbjct: 204 GNVVVAKAYFCG-------LMKFG-FCCDSFTYTSLILGYCKIHELGDAYKVFEIM 251
>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
Length = 614
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 141/337 (41%), Gaps = 21/337 (6%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIG 191
+ + +++ L R G G YT + + +D A + E + + +
Sbjct: 56 KAKRSIDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVV 115
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ N D+ Q LF +K SPS+VTYNTL+ R ++ A FQE
Sbjct: 116 TYNSLIDGLCKNNEPDRAQELFEHMKS-VECSPSMVTYNTLLDGLFRTGKLERAMALFQE 174
Query: 252 I-------KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304
+ D SPNV TY+ LI G A + E+ + MKA PD TY +L+
Sbjct: 175 MLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVD 234
Query: 305 GYAHSGNLPRMEKIYELVKHHVDGKEFP-LIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
G ++ +E+++ +D P L+ + C R+ ALMR + +
Sbjct: 235 GLCKE---SKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRAR-RVSDALALMRDMTCR 290
Query: 364 EYRPWLNVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
P NV+ LI K +++ + D + K + I +++ + + V
Sbjct: 291 GCTP--NVVTYGTLIDGLCKVGRVKDACAMLADMID-KGGTPDLMIYNMLINGLCKADQV 347
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
D+ ++RA S G + Y S + R++E
Sbjct: 348 DESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDE 384
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 34/208 (16%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C RR S+ A + M G P + YGT G+ GR+
Sbjct: 270 GLCRARRVSDALALMRDMTCRGCTPNVVT-----------YGT------LIDGLCKVGRV 312
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL--SDKCQSLFRDLKK--EANISPS 225
+ A + A+ +K GT + ++ + NGL +D+ L++ I P
Sbjct: 313 KD---ACAMLADMIDKG----GTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPD 365
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE--- 282
+VTY+++I R +D +K P+V Y+ LI G A GKV+E
Sbjct: 366 VVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKA---GKVDEAFD 422
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+Y++M D TY L+ G +G
Sbjct: 423 LYEVMAGDGCDADVVTYSTLIDGLCKAG 450
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P + TY L+ F R +D + F E++ NL PNVF + LI G A
Sbjct: 7 PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRC 66
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
++ M+ ++ DT Y LL G L + I ++ H
Sbjct: 67 FRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDH 108
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 192 TYNALL-GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TYN+LL G +SD +L RD+ +P++VTY TLI ++ V A
Sbjct: 263 TYNSLLHGLCRARRVSDA-LALMRDMTCRG-CTPNVVTYGTLIDGLCKVGRVKDACAMLA 320
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK---AGPVMPDTNTYLLLLRGYA 307
++ D +P++ YN LI G A +V+E +++ +G + PD TY ++ G
Sbjct: 321 DMIDKGGTPDLMIYNMLINGLCKA---DQVDESIALLRRAVSGGIKPDVVTYSSVIYGLC 377
Query: 308 HSGNLPRMEKIYELVK 323
S L ++ VK
Sbjct: 378 RSNRLDEACRLLLYVK 393
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 73/188 (38%), Gaps = 10/188 (5%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKC 209
G P Y+ I + VD A DL+ A + TY+ L+ G D+
Sbjct: 396 GCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEA 455
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
L + + PS +TYN+LI L +D +E++ SN +P+ TYN LI
Sbjct: 456 HLLLARMVRMGT-PPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIH 514
Query: 270 GYMTAWMWGKVEEIYQMMK-----AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
G + + K AG DT Y L+ G +G R+ + + +
Sbjct: 515 GMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAG---RVAEALDYFQE 571
Query: 325 HVDGKEFP 332
+D P
Sbjct: 572 MIDNGVIP 579
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 15/163 (9%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALL-GAYMYNGLSDKCQSLFRDLKKEANISPS 225
+ + VD + L A + +K + TY++++ G N L + C+ L K P
Sbjct: 343 KADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLL--YVKSRGCPPD 400
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY- 284
++ Y+TLI + VD ++ + +V TY+ LI G A G+V+E +
Sbjct: 401 VILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKA---GRVDEAHL 457
Query: 285 ---QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
+M++ G P T TY L++G +L +++ ELV+
Sbjct: 458 LLARMVRMG-TPPSTMTYNSLIKGLC---DLNHLDEAIELVEE 496
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 85/232 (36%), Gaps = 23/232 (9%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRL------------------ALEVLNWRRRQAGYG 151
G C R S +E MK G P + A EVL
Sbjct: 200 GLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVP 259
Query: 152 TPMTKEEYTKGIKFAGRINN-VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210
+T G+ A R+++ + L D+ ++ T GT + G + D C
Sbjct: 260 NLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTL--IDGLCKVGRVKDACA 317
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
L + K +P ++ YN LI+ + VD A + + P+V TY+ +I G
Sbjct: 318 MLADMIDKGG--TPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYG 375
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
+ + + +K+ PD Y L+ G +G + +YE++
Sbjct: 376 LCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVM 427
>gi|302801820|ref|XP_002982666.1| hypothetical protein SELMODRAFT_421954 [Selaginella moellendorffii]
gi|300149765|gb|EFJ16419.1| hypothetical protein SELMODRAFT_421954 [Selaginella moellendorffii]
Length = 796
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 139/323 (43%), Gaps = 19/323 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNTLISVFGRLLLVDHMEAAFQ 250
+++ LL Y Q + DLK A+ P + V YNTLI V+G+ +D ++
Sbjct: 137 SFSILLNTYGRGKDFQAVQRVLADLK--ADKCPMTTVAYNTLIKVYGKAHKLDEAWGYYK 194
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E++DS P++FT+N L++ Y A KV E+Y M+ D Y +++ H+G
Sbjct: 195 EMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLEVYDEMQKIGCSLDRVGYEVVV---PHAG 251
Query: 311 NLPRME---KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
+ R++ ++E +K A+I K + K MR + E RP
Sbjct: 252 KVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQLKSGRLEIGTKYFEEMRSL---EIRP 308
Query: 368 WLNVL--LIRVYAKEDCLEEMEKSIND--AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLA 423
L LI Y K LE K D AF +K ++ I +V ++ + +D
Sbjct: 309 LLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYKPNLC---IYAALVDAHAKAGMLDAAL 365
Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
F +R G L ++ + +A + E + +EM + S T I+ A
Sbjct: 366 EFYERMRGVGLWLPPLIFAVLIEQHAQAGKAETAVRLYREMRGVGLRPSHFTCRIVVGAV 425
Query: 484 ATCGQRRKVNQVLGLMCKNGYDV 506
A G+ V ++L M + G +V
Sbjct: 426 AKGGKYDDVERILFEMQEMGLNV 448
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/375 (20%), Positives = 153/375 (40%), Gaps = 35/375 (9%)
Query: 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQS 211
PMT Y IK G+ + +D A + E + + I T+N L+ Y Y G S+K
Sbjct: 167 PMTTVAYNTLIKVYGKAHKLDEAWGYYKEMQDSRCVPDIFTFNTLMSLYSYAGQSEKVLE 226
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
++ +++K S V Y ++ G++ +D F+ +K PN Y+ LIAG
Sbjct: 227 VYDEMQK-IGCSLDRVGYEVVVPHAGKVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQ 285
Query: 272 MTAWMWGKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
+ + G++E + ++ M++ + P T+ L+ Y SG L K ++ ++
Sbjct: 286 LKS---GRLEIGTKYFEEMRSLEIRPLLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYK 342
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEK 388
+ A++ A++K + D + MR + WL L+ V ++
Sbjct: 343 PNLCIYAALVDAHAKAGMLDAALEFYERMRGVGL-----WLPPLIFAVLIEQHA------ 391
Query: 389 SINDAFEHKTSVTTVRIMRCIV--SSYFRCNAV----------DKLANFVKRAESAGWRL 436
A + +T+V R MR + S+F C V D + + + G +
Sbjct: 392 ---QAGKAETAVRLYREMRGVGLRPSHFTCRIVVGAVAKGGKYDDVERILFEMQEMGLNV 448
Query: 437 CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
++ S +V +R+ + + ++ + + + + +CG Q+L
Sbjct: 449 ADAVNDS-IVKLVDDKRISDAWELFLKVTGHGFTPHVSLCREILHGFLSCGDMEHARQML 507
Query: 497 GLMCKNGYDVPVNAF 511
M + G V + +
Sbjct: 508 SFMQRPGSAVDLRTY 522
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 126/294 (42%), Gaps = 24/294 (8%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKC 209
G + + Y + AG++ +DLA LF A H Y+AL+ + +G +
Sbjct: 235 GCSLDRVGYEVVVPHAGKVGRLDLACMLFERMKAEGHQPNAVAYSALIAGQLKSGRLEIG 294
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
F +++ I P + T+ +LI + + ++ F++++ N PN+ Y L+
Sbjct: 295 TKYFEEMRS-LEIRPLLGTFASLIEAYCKSGRLETGLKFFKDMEAFNYKPNLCIYAALVD 353
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329
+ A M E Y+ M+ + + +L+ +A +G ++Y ++
Sbjct: 354 AHAKAGMLDAALEFYERMRGVGLWLPPLIFAVLIEQHAQAGKAETAVRLYREMRGVGLRP 413
Query: 330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM--E 387
R ++ A +K D +++I M+ + LNV A D + ++ +
Sbjct: 414 SHFTCRIVVGAVAKGGKYDDVERILFEMQEMG-------LNV----ADAVNDSIVKLVDD 462
Query: 388 KSINDAFEHKTSVTT------VRIMRCIVSSYFRCNAVD---KLANFVKRAESA 432
K I+DA+E VT V + R I+ + C ++ ++ +F++R SA
Sbjct: 463 KRISDAWELFLKVTGHGFTPHVSLCREILHGFLSCGDMEHARQMLSFMQRPGSA 516
>gi|302794911|ref|XP_002979219.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
gi|300152987|gb|EFJ19627.1| hypothetical protein SELMODRAFT_110655 [Selaginella moellendorffii]
Length = 1143
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 4/174 (2%)
Query: 149 GYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSD 207
G G P+ Y IK R + A D ++ N L+ ++ TY+ ++ + +G +
Sbjct: 855 GDGIPLDIVAYNTIIKADLRAGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTR 914
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+ +F+DLK A P Y+ +++ + + + +H F+ +K L P+ +YN L
Sbjct: 915 DAEKMFKDLKS-AGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNL 973
Query: 268 IAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
I Y A + K E++ +M KAG P + T+LLL+ YAH G E E
Sbjct: 974 IDAYARAGQFAKAEQLLVEMAKAG-CPPSSVTFLLLISAYAHRGKCNEAENALE 1026
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 135/317 (42%), Gaps = 24/317 (7%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+ Q F +K + + PS++ Y+ L+ V+GR + EAAFQE+ D L P+ ++ +
Sbjct: 258 EAQEFFAWMKLQLSYIPSVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTM 317
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHV 326
I Y A M+ ++ +Y+ M + ++P + TY +L + L ++E LV+ V
Sbjct: 318 ILNYANAEMFDEMLTMYEAMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESV 377
Query: 327 DGKEFPLIRA-MICAYSKCS-VTDRIKKIEALMRL--IPEKE-YRPWLNVL--LIRVYAK 379
+ PL A MI Y K + ++ EA++ P+ Y L++L L R
Sbjct: 378 ELS--PLAYALMITIYRKLGRFEEALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEA 435
Query: 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC-- 437
D M++ E TS + M I C DK + C
Sbjct: 436 VDVFTAMQRQ-----ELCTSKYSYATMLHI------CEKADKFELAASIFSDMQMKRCPV 484
Query: 438 -RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
+Y S + +Y +E E + +EM ++ KTF +M G+ + QV+
Sbjct: 485 DEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKYNEAVQVM 544
Query: 497 GLMCKNGYDVPVNAFPS 513
+ G ++ A+ +
Sbjct: 545 EELLAKGLNLDDTAWKT 561
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 78/175 (44%), Gaps = 6/175 (3%)
Query: 166 AGRINN-VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
AG+ N V + +L A+ N + LL Y+ G ++ F+ L E+ I+
Sbjct: 534 AGKYNEAVQVMEELLAKGLNLDDTA---WKTLLHCYVKAGNVERATKTFKTLV-ESGIA- 588
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
++ YN ++S++ +++ + FQ++K S++ P+ + ++ Y A M EE+
Sbjct: 589 DLMAYNDMLSLYAEFDMLEDAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVL 648
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
+ M+ PD T +L+ Y + + + E + + + R +C
Sbjct: 649 RQMREKGFTPDHITQGILINAYGEANRIEEAAGLLEASAKEDESEAAAISRIYLC 703
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 175 AADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
AADLF + L+ +YN L+ AY G K + L ++ K A PS VT+ LI
Sbjct: 951 AADLFEAMKLRGLRPHEVSYNNLIDAYARAGQFAKAEQLLVEMAK-AGCPPSSVTFLLLI 1009
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
S + + E A + ++ + + P V YN ++ + A + + E Y M+ +
Sbjct: 1010 SAYAHRGKCNEAENALERMQTAAIRPTVRHYNEVMLAFSRARLPSQAMESYLKMERSGIQ 1069
Query: 294 PDTNTYLLLLR 304
PD + ++R
Sbjct: 1070 PDVVSSRTMIR 1080
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 1/128 (0%)
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
LL AY GL + +L + + I IV YNT+I R + + + +
Sbjct: 833 LLNAYSKAGLVEDADALIH-MARGDGIPLDIVAYNTIIKADLRAGRLKKAIDTYSSLTNL 891
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
L P++ TY+ +I+ + + E++++ +K+ PD Y ++ YA SG
Sbjct: 892 GLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLKSAGFQPDEKVYSQMMNCYAKSGMYEHA 951
Query: 316 EKIYELVK 323
++E +K
Sbjct: 952 ADLFEAMK 959
Score = 45.1 bits (105), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 74/163 (45%), Gaps = 2/163 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLK 217
Y + G++ D A D+F + L T +Y +L + S+F D++
Sbjct: 419 YNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSYATMLHICEKADKFELAASIFSDMQ 478
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ +V Y ++IS++G+ L D E FQE+ + L +V T++ + + A +
Sbjct: 479 MKRCPVDEVV-YTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKY 537
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ ++ + + A + D + LL Y +GN+ R K ++
Sbjct: 538 NEAVQVMEELLAKGLNLDDTAWKTLLHCYVKAGNVERATKTFK 580
>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
Length = 332
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 113/249 (45%), Gaps = 14/249 (5%)
Query: 122 AFVELMKQLGSRPR-LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAG--RINNVDLAADL 178
AF LM L R L E L R + G+ E T G G ++ + D A +L
Sbjct: 12 AFNTLMNGLCREGRVLEAEALVDRMVENGH----QPNEVTYGTIVNGMCKMGDTDSALNL 67
Query: 179 FAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
+ H+K + Y A++ +G K Q+LF ++ + I P+++TYN +I
Sbjct: 68 LRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKG-IFPNVLTYNCMIDGCC 126
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN 297
E +++ +SN+ P+V T+N LI ++ + EE+Y+ M + PDT
Sbjct: 127 SYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTI 186
Query: 298 TYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI--CAYSKCSVTDRIKKIEA 355
TY L+ G+ L + I++L+ I +I C +K V D IK +
Sbjct: 187 TYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAK-RVDDGIKLLHE 245
Query: 356 LMR--LIPE 362
++R L+P+
Sbjct: 246 MLRRGLVPD 254
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 3/130 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+NAL+ A++ G + + L+R++ NI P +TYN+LI F + +D + F
Sbjct: 152 TFNALINAFVKEGKISEAEELYREMLGR-NIFPDTITYNSLIDGFCKHSRLDDAKHIFDL 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTA-WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ SPNV T N LI G A + ++ +++M++ G V PD+ +Y L+ G+ +G
Sbjct: 211 MVSKGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLV-PDSVSYNTLIHGFCQAG 269
Query: 311 NLPRMEKIYE 320
+L + +++
Sbjct: 270 DLNAAQDLFQ 279
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 175 AADLFAEAANKHL--KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
A +L+ E +++ TI TYN+L+ + + D + +F DL SP+++T NTL
Sbjct: 169 AEELYREMLGRNIFPDTI-TYNSLIDGFCKHSRLDDAKHIF-DLMVSKGGSPNVITINTL 226
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
I R VD E+ L P+ +YN LI G+ A ++++Q M
Sbjct: 227 IGGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTLIHGFCQAGDLNAAQDLFQEM 281
>gi|413944457|gb|AFW77106.1| hypothetical protein ZEAMMB73_510937 [Zea mays]
Length = 492
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 115/239 (48%), Gaps = 7/239 (2%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ TY+ L+ + ++ +K +SL D+ + A I P+ VTYNTLI +G+ ME+
Sbjct: 212 VQTYSILIKSCLHAYDFEKVKSLLADMAR-AGIPPNTVTYNTLIDAYGKAGRFAEMESTL 270
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
++ N P+V+T N + + ++ +E Y+ +A ++P+ TY +LL Y +
Sbjct: 271 LKMLSQNCKPDVWTMNSTLRAFGSSGQIETMESCYEKFQASGIVPNIKTYNILLDSYGKA 330
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
+M + E ++ + +I A+ + ++++E + RL+ + +P
Sbjct: 331 KMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAG---DLEQMEYIFRLMKSERIKPNC 387
Query: 370 NVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L ++R Y + +++++ ++ E+ + C+V +Y R + ++ + +
Sbjct: 388 VTLCSVVRAYGRAGEVKKIKTALR-IIENSDITLDIVFFNCLVDAYGRVGCLAEMWDIL 445
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/299 (19%), Positives = 126/299 (42%), Gaps = 13/299 (4%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
D +F ++ + P I Y LI++ G+ + FQ + D +PN+ +Y
Sbjct: 122 DSALKVFELMRDQVWYKPHIGIYIKLITMLGKCKQPEKAHQLFQAMIDEGCAPNLQSYTA 181
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGP-VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
L++ Y + + + ++ MK P PD TY +L++ H+ + EK+ L+
Sbjct: 182 LVSTYSRSGRFREAFDLLDRMKDTPGCQPDVQTYSILIKSCLHAYDF---EKVKSLLADM 238
Query: 326 VDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKE 380
P +I AY K R ++E+ + + + +P W +R +
Sbjct: 239 ARAGIPPNTVTYNTLIDAYGKAG---RFAEMESTLLKMLSQNCKPDVWTMNSTLRAFGSS 295
Query: 381 DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL 440
+E ME S + F+ V ++ ++ SY + +K+ ++ + +
Sbjct: 296 GQIETME-SCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVT 354
Query: 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
Y+ + + +E+ME + + M++ +I + T + AY G+ +K+ L ++
Sbjct: 355 YNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTALRII 413
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 3/160 (1%)
Query: 166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
+G+I ++ + F A+ + I TYN LL +Y + +K ++ ++K S +
Sbjct: 295 SGQIETMESCYEKFQ--ASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQK-YYYSWT 351
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
IVTYN +I FGR ++ ME F+ +K + PN T ++ Y A K++ +
Sbjct: 352 IVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTALR 411
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
+++ + D + L+ Y G L M I +L+K H
Sbjct: 412 IIENSDITLDIVFFNCLVDAYGRVGCLAEMWDILDLMKEH 451
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 89/191 (46%), Gaps = 9/191 (4%)
Query: 176 ADLFAEAANKHLKTIG--------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
A FAE + LK + T N+ L A+ +G + +S + + + I P+I
Sbjct: 260 AGRFAEMESTLLKMLSQNCKPDVWTMNSTLRAFGSSGQIETMESCYEKFQ-ASGIVPNIK 318
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TYN L+ +G+ + + M A + ++ S + TYN +I + A ++E I+++M
Sbjct: 319 TYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLM 378
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347
K+ + P+ T ++R Y +G + +++ ++++ + ++ AY +
Sbjct: 379 KSERIKPNCVTLCSVVRAYGRAGEVKKIKTALRIIENSDITLDIVFFNCLVDAYGRVGCL 438
Query: 348 DRIKKIEALMR 358
+ I LM+
Sbjct: 439 AEMWDILDLMK 449
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
TI TYN ++ A+ G ++ + +FR +K E I P+ VT +++ +GR V ++ A
Sbjct: 351 TIVTYNVVIDAFGRAGDLEQMEYIFRLMKSE-RIKPNCVTLCSVVRAYGRAGEVKKIKTA 409
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ I++S+++ ++ +N L+ Y ++ +I +MK PD T +++ +
Sbjct: 410 LRIIENSDITLDIVFFNCLVDAYGRVGCLAEMWDILDLMKEHRCKPDKVTCTTMIKWFLI 469
Query: 309 SG 310
G
Sbjct: 470 KG 471
>gi|115466680|ref|NP_001056939.1| Os06g0172000 [Oryza sativa Japonica Group]
gi|55773690|dbj|BAD72273.1| putative PPR2 [Oryza sativa Japonica Group]
gi|113594979|dbj|BAF18853.1| Os06g0172000 [Oryza sativa Japonica Group]
gi|215697063|dbj|BAG91057.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218197679|gb|EEC80106.1| hypothetical protein OsI_21852 [Oryza sativa Indica Group]
gi|222635046|gb|EEE65178.1| hypothetical protein OsJ_20289 [Oryza sativa Japonica Group]
Length = 511
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/352 (22%), Positives = 141/352 (40%), Gaps = 16/352 (4%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
AL+V + R Q Y + Y K I G+ + A +LF ++ + +Y A
Sbjct: 143 ALKVFDLMRDQVWYRPYVGI--YVKLITMLGKCKQPERAHELFQAMVDEGCAPNLESYTA 200
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ AY +G D+ SL +K P + TY+ LI + ++ +++ +
Sbjct: 201 LVSAYSRSGRFDRAFSLLEQMKATPGCRPDVQTYSILIKSCLHAYDFERVKYLMEDMARA 260
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
+ PNV TYN LI Y A + ++E M PD T LR + SG + M
Sbjct: 261 GIRPNVVTYNTLIDAYGKAGRFAEMESTLLEMLTENCKPDVWTMNSTLRAFGGSGQIETM 320
Query: 316 EKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV---L 372
E YE + ++ +Y K + +++ + M +K Y W V +
Sbjct: 321 ESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYM----QKYYYSWTIVTYNV 376
Query: 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA 432
+I + + LE+ME + V + +V +Y R V K+ ++ E++
Sbjct: 377 VIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLC-SLVRAYGRAGDVKKIKTVLRIVENS 435
Query: 433 GWRLCRSLYHSKMVMYASQRRVEEMESVLKEM-----ENYKIDCSKKTFWIM 479
L ++ + + + EM VL M + K+ C+ W +
Sbjct: 436 DITLDIVFFNCLVDAFGRVGCLAEMWDVLDIMKLQRCKPDKVTCTTMIKWFL 487
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/296 (19%), Positives = 126/296 (42%), Gaps = 7/296 (2%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
D +F ++ + P + Y LI++ G+ + FQ + D +PN+ +Y
Sbjct: 141 DSALKVFDLMRDQVWYRPYVGIYVKLITMLGKCKQPERAHELFQAMVDEGCAPNLESYTA 200
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGP-VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
L++ Y + + + + + MKA P PD TY +L++ H+ + R++ + E +
Sbjct: 201 LVSAYSRSGRFDRAFSLLEQMKATPGCRPDVQTYSILIKSCLHAYDFERVKYLMEDMARA 260
Query: 326 VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCL 383
+I AY K R ++E+ + + + +P W +R + +
Sbjct: 261 GIRPNVVTYNTLIDAYGKAG---RFAEMESTLLEMLTENCKPDVWTMNSTLRAFGGSGQI 317
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
E ME S + F+ ++ ++ SY + +K+ ++ + + Y+
Sbjct: 318 ETME-SCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNV 376
Query: 444 KMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
+ + +E+ME + + M++ +I + T + AY G +K+ VL ++
Sbjct: 377 VIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSLVRAYGRAGDVKKIKTVLRIV 432
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
TI TYN ++ A+ G ++ + +FR +K E I P+ VT +L+ +GR V ++
Sbjct: 370 TIVTYNVVIDAFGRAGDLEQMEYIFRLMKSE-RIKPNCVTLCSLVRAYGRAGDVKKIKTV 428
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ +++S+++ ++ +N L+ + ++ ++ +MK PD T +++ +
Sbjct: 429 LRIVENSDITLDIVFFNCLVDAFGRVGCLAEMWDVLDIMKLQRCKPDKVTCTTMIKWFLI 488
Query: 309 SG 310
G
Sbjct: 489 KG 490
>gi|242092154|ref|XP_002436567.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
gi|241914790|gb|EER87934.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
Length = 492
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 115/239 (48%), Gaps = 7/239 (2%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ TY+ L+ + ++ +K +SL D+ + A I P+ VTYNTLI +G+ ME+
Sbjct: 212 VKTYSILIKSCLHAYDFEKVKSLLTDMAR-AGIRPNTVTYNTLIDAYGKARRFPEMESTL 270
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
++ N P+++T N + + ++ +E Y+ +A ++P+ TY +LL Y +
Sbjct: 271 LKMLSQNCKPDIWTMNSTLRAFGSSGQIETMESCYEKFQASGIVPNIKTYNILLDSYGKA 330
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
+M + E ++ + +I A+ + ++++E + RL+ + +P
Sbjct: 331 KMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFGRAG---DLEQMEYIFRLMKSERIKPNC 387
Query: 370 NVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L ++R Y + ++++ K++ E+ + C+V +Y R + ++ + +
Sbjct: 388 VTLCSVVRAYGRAGEVKKI-KTVLRIVENSDITLDIVFFNCLVDAYGRVGCLAEMWDIL 445
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 70/330 (21%), Positives = 132/330 (40%), Gaps = 14/330 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y K I G+ + A +LF ++ + +Y AL+ AY +G + +L +K
Sbjct: 144 YIKLITMLGKCKKPEKAHELFQAMIDEGCAPNLESYTALVSAYSRSGRFHEAFNLLDRMK 203
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P + TY+ LI + +++ ++ + + PN TYN LI Y A +
Sbjct: 204 DTPGCQPDVKTYSILIKSCLHAYDFEKVKSLLTDMARAGIRPNTVTYNTLIDAYGKARRF 263
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
++E M + PD T LR + SG + ME YE + +
Sbjct: 264 PEMESTLLKMLSQNCKPDIWTMNSTLRAFGSSGQIETMESCYEKFQASGIVPNIKTYNIL 323
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV---LLIRVYAKEDCLEEMEKSINDAF 394
+ +Y K + +++ + M +K Y W V ++I + + LE+ME
Sbjct: 324 LDSYGKAKMYEKMGAVMEYM----QKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMK 379
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454
+ V + +V +Y R V K+ ++ E++ L ++ + Y +
Sbjct: 380 SERIKPNCVTLC-SVVRAYGRAGEVKKIKTVLRIVENSDITLDIVFFNCLVDAYGRVGCL 438
Query: 455 EEMESVLKEMENY-----KIDCSKKTFWIM 479
EM +L M+ + K+ C+ W +
Sbjct: 439 AEMWDILDLMKEHRCKPDKVTCATMIKWFL 468
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/299 (20%), Positives = 126/299 (42%), Gaps = 13/299 (4%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
D +F ++ + P I Y LI++ G+ + FQ + D +PN+ +Y
Sbjct: 122 DSALKVFELMRDQVWYRPYIGIYIKLITMLGKCKKPEKAHELFQAMIDEGCAPNLESYTA 181
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGP-VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
L++ Y + + + + MK P PD TY +L++ H+ + EK+ L+
Sbjct: 182 LVSAYSRSGRFHEAFNLLDRMKDTPGCQPDVKTYSILIKSCLHAYDF---EKVKSLLTDM 238
Query: 326 VDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKE 380
P +I AY K R ++E+ + + + +P W +R +
Sbjct: 239 ARAGIRPNTVTYNTLIDAYGKAR---RFPEMESTLLKMLSQNCKPDIWTMNSTLRAFGSS 295
Query: 381 DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL 440
+E ME S + F+ V ++ ++ SY + +K+ ++ + +
Sbjct: 296 GQIETME-SCYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVT 354
Query: 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
Y+ + + +E+ME + + M++ +I + T + AY G+ +K+ VL ++
Sbjct: 355 YNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTVLRIV 413
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
TI TYN ++ A+ G ++ + +FR +K E I P+ VT +++ +GR V ++
Sbjct: 351 TIVTYNVVIDAFGRAGDLEQMEYIFRLMKSE-RIKPNCVTLCSVVRAYGRAGEVKKIKTV 409
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ +++S+++ ++ +N L+ Y ++ +I +MK PD T +++ +
Sbjct: 410 LRIVENSDITLDIVFFNCLVDAYGRVGCLAEMWDILDLMKEHRCKPDKVTCATMIKWFLI 469
Query: 309 SG 310
G
Sbjct: 470 KG 471
>gi|15219527|ref|NP_177512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169780|sp|Q9C9U0.1|PP118_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g73710
gi|12324197|gb|AAG52063.1|AC012679_1 hypothetical protein; 49134-52109 [Arabidopsis thaliana]
gi|332197379|gb|AEE35500.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 991
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 1/161 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN ++ AY L +K SLF+ +K + P TYN+L + + LVD + E+
Sbjct: 518 YNVMIKAYGKAKLHEKALSLFKGMKNQGTW-PDECTYNSLFQMLAGVDLVDEAQRILAEM 576
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
DS P TY +IA Y+ + ++Y+ M+ V P+ Y L+ G+A SG +
Sbjct: 577 LDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGMV 636
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
+ + +++ H ++ ++I AYSK + +++
Sbjct: 637 EEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRV 677
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 92/212 (43%), Gaps = 15/212 (7%)
Query: 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT------YNALLGAYMYNGLSDKCQS 211
EY IK G+ + A LF K +K GT YN+L L D+ Q
Sbjct: 517 EYNVMIKAYGKAKLHEKALSLF-----KGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQR 571
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+ ++ ++ P TY +I+ + RL L+ ++ ++ + + PN Y LI G+
Sbjct: 572 ILAEML-DSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGF 630
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
+ M + + ++MM+ V + L++ Y+ G L ++Y+ +K G +
Sbjct: 631 AESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPDV 690
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
+M+ S C+ + + E++ + EK
Sbjct: 691 AASNSML---SLCADLGIVSEAESIFNALREK 719
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 119/299 (39%), Gaps = 9/299 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N L+ Y G + +LF ++ K + + VT+NT+I G + E+ ++
Sbjct: 307 TFNTLIDLYGKAGRLNDAANLFSEMLK-SGVPIDTVTFNTMIHTCGTHGHLSEAESLLKK 365
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ +SP+ TYN L++ + A E Y+ ++ + PDT T+ +L
Sbjct: 366 MEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKM 425
Query: 312 LPRMEKIYELVKHH---VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ +E + + + +D P+I M Y + + K + R +
Sbjct: 426 VAEVEAVIAEMDRNSIRIDEHSVPVIMQM---YVNEGLVVQAKAL--FERFQLDCVLSST 480
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+I VYA++ E E V ++ +Y + +K + K
Sbjct: 481 TLAAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLFKG 540
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
++ G Y+S M A V+E + +L EM + KT+ M +Y G
Sbjct: 541 MKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLDSGCKPGCKTYAAMIASYVRLG 599
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 72/387 (18%), Positives = 154/387 (39%), Gaps = 54/387 (13%)
Query: 166 AGRINNVDLAADLFAE--AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANIS 223
AGR+N+ AA+LF+E + + T+ T+N ++ +G + +SL + ++ E IS
Sbjct: 318 AGRLND---AANLFSEMLKSGVPIDTV-TFNTMIHTCGTHGHLSEAESLLKKME-EKGIS 372
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P TYN L+S+ ++ +++I+ L P+ T+ ++ M +VE +
Sbjct: 373 PDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKMVAEVEAV 432
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV--------------------- 322
M + D ++ ++++ Y + G + + + ++E
Sbjct: 433 IAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQLDCVLSSTTLAAVIDVYAEK 492
Query: 323 ------------KHHVDGKEFPLIR--AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
K ++ G+ ++ MI AY K + ++ AL K W
Sbjct: 493 GLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEK-----ALSLFKGMKNQGTW 547
Query: 369 LNVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
+ L ++ A D ++E ++ + + + + +++SY R + +
Sbjct: 548 PDECTYNSLFQMLAGVDLVDEAQRILAEMLDSGCK-PGCKTYAAMIASYVRLGLLSDAVD 606
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
+ E G + +Y S + +A VEE + ME + + + + AY+
Sbjct: 607 LYEAMEKTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYS 666
Query: 485 TCGQRRKVNQVLGLM--CKNGYDVPVN 509
G + +V M + G DV +
Sbjct: 667 KVGCLEEARRVYDKMKDSEGGPDVAAS 693
>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
Length = 554
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 138/343 (40%), Gaps = 10/343 (2%)
Query: 154 MTKEEYTKGIKFAG--RINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQ 210
+T +YT I G + V +A ++ N L T YN L+ Y G +
Sbjct: 199 VTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAF 258
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
S F +K +I P +TYN LI+ + + + + E++D+ ++P V T+N LI
Sbjct: 259 STFGQMKSR-HIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA 317
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
Y K + M+ + P+ +Y ++ + +G +P I + + H
Sbjct: 318 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 377
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEK 388
+ A+I AY + D+ L+ + P + LLI+ + + E E+
Sbjct: 378 AQVYNAIIDAYVEHGPNDQAF---ILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEE 434
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
IN H+ V I + +R N +DK + +R G + YH +
Sbjct: 435 IINSLSNHRLIPDAVSYNTLISACCYRGN-IDKALDLQQRMHKYGIKSTVRTYHQLISGL 493
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
R+ EME + ++M + S IM AY+ G K
Sbjct: 494 GGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIK 536
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 142/334 (42%), Gaps = 59/334 (17%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN ++ G +F ++ + A + P+ +TYNT+I G + D +EA F+
Sbjct: 65 SYNVVIAGMWRAGRGGDAVEVFDEMTERA-VLPNHITYNTMID--GHIKGGD-LEAGFR- 119
Query: 252 IKDS----NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
++D L PN TYN L++G A G+ + M + ++PD TY +L G +
Sbjct: 120 LRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLS 179
Query: 308 HSGNLPRMEKIY-ELVKHHVDGKEF--PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE 364
+G+ M ++ + +K+ V ++ ++ +C K S+ + + + L+P
Sbjct: 180 RNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPT-- 237
Query: 365 YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
R N LI Y + E+E + + + K+ R I + NA L N
Sbjct: 238 -RVIYNT-LINGYCQTG---ELEGAFSTFGQMKS--------RHIKPDHITYNA---LIN 281
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
+ +AE R+ + +L EM++ ++ + +TF + AY
Sbjct: 282 GLCKAE----------------------RITNAQDLLMEMQDNGVNPTVETFNTLIDAYG 319
Query: 485 TCGQRRKVNQVLGLMCKNG-------YDVPVNAF 511
GQ K VL M +NG Y VNAF
Sbjct: 320 RTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 353
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN L+ A Y G DK L + + K I ++ TY+ LIS G ++ ME +Q+
Sbjct: 450 SYNTLISACCYRGNIDKALDLQQRMHKYG-IKSTVRTYHQLISGLGGAGRLNEMEYLYQK 508
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
+ +N+ P+ +N ++ Y K E++ + M
Sbjct: 509 MMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 544
>gi|297737369|emb|CBI26570.3| unnamed protein product [Vitis vinifera]
Length = 1042
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 88/387 (22%), Positives = 158/387 (40%), Gaps = 45/387 (11%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I GR A LF + +K L TYN+LL A+ G DK + + D+
Sbjct: 307 YNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMV 366
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K +TYNT+I ++G+ D + ++K S SP+ TY LI A M
Sbjct: 367 K-MGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMI 425
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHV--DGKEFPLI 334
+ E+ M V P T+ L+ GYA +G E+ ++ +++ + D + ++
Sbjct: 426 KEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVM 485
Query: 335 RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAF 394
++ +++ ++ + L P+ L +++RV KE+ E++ K + D
Sbjct: 486 LDILLRFNESGKAMKLYQEMVLHSFKPDHA----LYEVMLRVLGKENREEDVHKVVKDME 541
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG--------------------- 433
E + V I S + D AN ++ A S G
Sbjct: 542 ELCGMNSQV-----ICSILVKGECFDHAANMLRLAISQGCELDQYGKARDFGLFCGTEEL 596
Query: 434 --------WRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
+L RS YH M M+ + + E +L M+ ++ + T ++ +Y+
Sbjct: 597 FEGLLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSG 656
Query: 486 CGQRRKVNQVLGLMCKNGYDVPVNAFP 512
GQ + +VL + G +P++ P
Sbjct: 657 SGQPEEAEKVLDNLKVEG--LPLSTLP 681
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 133/317 (41%), Gaps = 45/317 (14%)
Query: 80 DLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG-SRPRLAL 138
D Q V L D +L + + V VLD++ + + FV +K +G S + AL
Sbjct: 94 DWRQRVQFLTDRILG-LKSEEFVADVLDDRK---VQMTPTDFCFV--VKWVGQSSWQRAL 147
Query: 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG 198
EV W + Y +P + T + G+ N LA ++FA A T+ YNA++G
Sbjct: 148 EVYEWLNLRHWY-SPNARMLATI-LSVLGKANQEALAVEIFARAEAASGNTVQVYNAMMG 205
Query: 199 AYMYNGLSDKCQSLFRDLK------------------------------------KEANI 222
Y G K Q L ++ + + I
Sbjct: 206 VYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSGI 265
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
P I+TYNTLIS R ++ + ++ P+++TYN +I+ Y M +
Sbjct: 266 QPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGR 325
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342
+++ +++ +PD TY LL +A GN+ ++++I E + GK+ +I Y
Sbjct: 326 LFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYG 385
Query: 343 KCSVTDRIKKIEALMRL 359
K D ++ + M+L
Sbjct: 386 KRGQHDLAFQLYSDMKL 402
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 106/284 (37%), Gaps = 42/284 (14%)
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEI---KDSNLSPNVFTYNYLIAGYMTAWMWGK 279
SP+ T++SV G+ + EA EI ++ V YN ++ Y + K
Sbjct: 160 SPNARMLATILSVLGKA----NQEALAVEIFARAEAASGNTVQVYNAMMGVYARTGRFTK 215
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
V+E+ +M++ PD ++ L+ SG + I L + G I+ I
Sbjct: 216 VQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSG-----IQPDII 270
Query: 340 AYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS 399
Y+ LI ++E LEE K ND H+
Sbjct: 271 TYNT-----------------------------LISACSRESNLEEAVKVYNDMVAHRCQ 301
Query: 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES 459
+ ++S Y RC + K ES G+ Y+S + +A + V++++
Sbjct: 302 -PDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKE 360
Query: 460 VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ ++M + T+ + + Y GQ Q+ M +G
Sbjct: 361 ICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSG 404
>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Glycine max]
Length = 564
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/345 (20%), Positives = 150/345 (43%), Gaps = 9/345 (2%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
+L NW G+ P + E Y + + AG++ DLA + ++ ++ T+ T++A
Sbjct: 161 SLAFFNWSSSLDGF--PASPEPYNEMLDLAGKLRQFDLAWHVIDLMKSRGVEITVHTFSA 218
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ Y+ GL+ + F + ++ +P +V ++ +IS + + ++ F +K
Sbjct: 219 LVRRYVRAGLAAEAVHAFNRM-EDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKH- 276
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
P+V Y L+ G+ A K EE++ MK + P+ TY +++ G + R
Sbjct: 277 RFEPDVVVYTSLVHGWCRAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSLCRCGQITRA 336
Query: 316 EKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI 374
++ E++ D +++ + K T+++ K+ M+ + N +I
Sbjct: 337 HDVFSEMIDAGCDPNAV-TFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYN-FII 394
Query: 375 RVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW 434
+ +++ LEE K +N + K I + + V+ R +
Sbjct: 395 ESHCRDENLEEAAKILNLMVK-KGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELNC 453
Query: 435 RLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
+ Y+ M M+A R + + + KEM+ +++ + T+ I+
Sbjct: 454 QPNTLTYNILMRMFAESRSTDMVLKMKKEMDESQVEPNVNTYRIL 498
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 1/190 (0%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT 192
R LA E ++ R YG ++ I + + A F ++ +
Sbjct: 225 RAGLAAEAVHAFNRMEDYGCTPDMVAFSIVISSLCKKRRANEAQSFFDSLKHRFEPDVVV 284
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y +L+ + G K + +F D+K A I P++ TY+ +I R + F E+
Sbjct: 285 YTSLVHGWCRAGDISKAEEVFSDMKM-AGIKPNVYTYSIVIDSLCRCGQITRAHDVFSEM 343
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
D+ PN T+N L+ ++ A KV ++Y MK DT +Y ++ + NL
Sbjct: 344 IDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDENL 403
Query: 313 PRMEKIYELV 322
KI L+
Sbjct: 404 EEAAKILNLM 413
>gi|242092396|ref|XP_002436688.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
gi|241914911|gb|EER88055.1| hypothetical protein SORBIDRAFT_10g007070 [Sorghum bicolor]
Length = 551
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 84/387 (21%), Positives = 151/387 (39%), Gaps = 51/387 (13%)
Query: 124 VELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDL--------- 174
E++K L + LAL W RQ G+ T E + I+ G+I L
Sbjct: 135 AEVLKNLSNAGMLALAFFRWAERQEGFS--YTAEGFHNLIEALGKIKQFKLVWSLVETMR 192
Query: 175 -------------------------AADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDK 208
A + F + + LKT + YN L+ + K
Sbjct: 193 CRGLLSKDTFKLIVRRYARARKVKEAVETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKK 252
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGR---LLLVDHMEAAFQEIKDSNLSPNVFTYN 265
Q++++++K++ P + TY L+ +G LL+V M +QE+ D+ + P+V Y
Sbjct: 253 AQAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTM---YQEMIDAGIRPDVVAYG 309
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
LI+ + + + +++ M+A MP + Y +L+ G L K +E K
Sbjct: 310 MLISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDEALKYFEQYKKS 369
Query: 326 VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR---LIPEKEYRPWLNVLLIRVYAKEDC 382
E P A++ AY + S + K+ MR + P + LI+ E+
Sbjct: 370 GFPMEVPTCNAVVGAYCRASKFEHAFKMVDEMRECKIGPNSRTYDVILHYLIKSQKFEEA 429
Query: 383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYH 442
++ D E + + T+ +V + VD N K+ G C ++
Sbjct: 430 YNVFQRMGMDGCEPQLNTYTM-----MVGMFCSNGRVDMALNVWKQMGERGVLPCMHMFS 484
Query: 443 SKMVMYASQRRVEEMESVLKEMENYKI 469
+ + + R+EE +EM + I
Sbjct: 485 ALINGLCFENRLEEACVYFQEMLDKGI 511
>gi|297827821|ref|XP_002881793.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
gi|297327632|gb|EFH58052.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
Length = 822
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/338 (21%), Positives = 147/338 (43%), Gaps = 14/338 (4%)
Query: 175 AADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
A D+F +K + + T+ +++ Y G + C+++F + E + P+IV+YN
Sbjct: 302 ALDVFNSMRDKRAECRPDVVTFTSIMHLYSVRGEIENCRAVFEAMLAEG-LKPNIVSYNA 360
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L+ + + ++ + F +IK + + P+V +Y L+ Y + GK +E++ MM+
Sbjct: 361 LMGAYAVHGMSENALSVFGDIKRNGIVPDVVSYTSLLNSYGRSRQPGKAKEVFLMMRKER 420
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351
P+ TY L+ Y +G L +I+ ++ DG + P + ++ + CS + +
Sbjct: 421 RKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQ--DGTK-PNVVSVCTLLAACSRSKKKV 477
Query: 352 KIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMR 407
+E ++ + LN I Y LE+ + K +V
Sbjct: 478 NVETVLSAAQSRGIN--LNTAAYNSAIGSYINAAELEKAIALYQTMRKKKVKADSV-TFT 534
Query: 408 CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467
++S R + + +++K E L + +Y S + Y+ Q +V E ES+ +M+
Sbjct: 535 ILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMA 594
Query: 468 KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
+ M +AY + K ++ M NG +
Sbjct: 595 GCKPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIE 632
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 79/385 (20%), Positives = 147/385 (38%), Gaps = 47/385 (12%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT + GR A ++F + K + TYNAL+ AY NG + +FR ++
Sbjct: 393 YTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQME 452
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ P++V+ TL++ R ++E + ++ N YN I Y+ A
Sbjct: 453 QDGT-KPNVVSVCTLLAACSRSKKKVNVETVLSAAQSRGINLNTAAYNSAIGSYINAAEL 511
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH--HVDGKEFPLIR 335
K +YQ M+ V D+ T+ +L+ G RM K E + + ++ PL +
Sbjct: 512 EKAIALYQTMRKKKVKADSVTFTILISGSC------RMSKYPEAISYLKEMEDLSIPLTK 565
Query: 336 ----AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKE------DCLEE 385
+++CAYSK + I M++ K +L A E + E
Sbjct: 566 EVYSSVLCAYSKQGQVTEAESIFNQMKMAGCKPDVIAYTSMLHAYNASEKWGKACELFLE 625
Query: 386 ME---------------KSINDAFEHKTSVTTVRIMR---------CIVSSYFRCNAVD- 420
ME ++ N + + +MR + CN +
Sbjct: 626 MEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEVPFTGAVFFEIFSACNTLQE 685
Query: 421 --KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWI 478
+ + ++ + L L + + ++ +VE M + ++ ++ + KT+ I
Sbjct: 686 WKRAIDLIQMMDPYLPSLSIGLTNQMLYLFGKSGKVEAMMKLFYKIIASGVEINFKTYAI 745
Query: 479 MYYAYATCGQRRKVNQVLGLMCKNG 503
+ G RK +VL M G
Sbjct: 746 LLEHLLAVGNWRKYIEVLEWMSDAG 770
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 109/303 (35%), Gaps = 41/303 (13%)
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G + C ++F+ +K + N YN +I + R VD F E++ + P+ T
Sbjct: 121 GCIELCVNVFKWMKSQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAET 180
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
Y+ LI + A W + M + P +TY L+ SGN + E+ K
Sbjct: 181 YDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNW---RQALEVCK 237
Query: 324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL 383
D P + S + K + L+ + RP I +Y CL
Sbjct: 238 KMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIY----CL 293
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS---L 440
++ +S ++ MR KRAE CR
Sbjct: 294 SKLGQS-------SQALDVFNSMR------------------DKRAE------CRPDVVT 322
Query: 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
+ S M +Y+ + +E +V + M + + ++ + AYA G V G +
Sbjct: 323 FTSIMHLYSVRGEIENCRAVFEAMLAEGLKPNIVSYNALMGAYAVHGMSENALSVFGDIK 382
Query: 501 KNG 503
+NG
Sbjct: 383 RNG 385
>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
Length = 532
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 111/271 (40%), Gaps = 41/271 (15%)
Query: 118 SNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAAD 177
++ AF L++ L ++ R + + RR G Y+ +K + AA+
Sbjct: 46 ADAVAFTPLLRTLCAKKRTSDAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAE 105
Query: 178 LF---AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234
L AE + + +Y+ ++ + G K +LF + + I P++VT N++I
Sbjct: 106 LIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVGKAYTLFCKML-DHGIPPNVVTCNSVID 164
Query: 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW----------------- 277
++ +D EA Q++ D ++ PN TYN LI GY+++ W
Sbjct: 165 GLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRP 224
Query: 278 ------------------GKVEEIYQ-MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
+ EI+ M+++GP PD TY LL GYA GNL M +
Sbjct: 225 NVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGP-KPDATTYGSLLHGYATEGNLVEMNNV 283
Query: 319 YELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
+L+ + I AY KC D
Sbjct: 284 KDLMVQNGMRSNHHTFSIEIYAYCKCGRLDE 314
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 8/192 (4%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
+N H +I Y AY G D+ F ++ + P IVTY T+I ++ +
Sbjct: 294 SNHHTFSIEIY-----AYCKCGRLDEASLTFIKMQ-QLGFMPDIVTYTTVIDGLCKIGRL 347
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI-YQMMKAGPVMPDTNTYLL 301
D + F ++ D LSPN+ T+ LI G+ W K EE+ Y+MM G + PD +
Sbjct: 348 DDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRG-IPPDVTIFTA 406
Query: 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIP 361
++ G + +K+++L+ MI Y + K+ M LI
Sbjct: 407 MIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIG 466
Query: 362 EKEYRPWLNVLL 373
K N LL
Sbjct: 467 LKPTAVTFNTLL 478
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 7/199 (3%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I +I +D A F + + L I T+ L+ + G +K + LF ++
Sbjct: 334 YTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMM 393
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ I P + + +I + V + F + + PNV +YN +I GY A
Sbjct: 394 -DRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEV 452
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-DGK---EFPL 333
G+V ++ M + P T+ LL G G P ++ L+ DG+ L
Sbjct: 453 GEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLKPDVDTCKTLIDSCCEDGRIEDILTL 512
Query: 334 IRAMICAYSKC-SVTDRIK 351
R M+ K ++T+ IK
Sbjct: 513 FREMLGKADKTDTITENIK 531
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 104/270 (38%), Gaps = 20/270 (7%)
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM--KAGPVMPDTNTYL 300
D M + + + +P+VF+Y+ L+ G + E+ MM PD +Y
Sbjct: 66 DAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYS 125
Query: 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI 360
++ G+ G++ + ++ + H ++I K D K EA+++ +
Sbjct: 126 TVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMD---KAEAVLQQM 182
Query: 361 PEKEYRPWLNVL--LIRVYAKEDCLEE---MEKSINDAFEHKTSVTTVRIMRCIVSSYFR 415
++ P LI Y E + K ++ + VT ++ C+ S F
Sbjct: 183 IDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFH 242
Query: 416 CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKT 475
A + + ++ SL H YA++ + EM +V M + + T
Sbjct: 243 AEAREIFNSMIQSGPKPDATTYGSLLHG----YATEGNLVEMNNVKDLMVQNGMRSNHHT 298
Query: 476 FWIMYYAYATCGQRRKVN------QVLGLM 499
F I YAY CG+ + + Q LG M
Sbjct: 299 FSIEIYAYCKCGRLDEASLTFIKMQQLGFM 328
>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 506
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 138/343 (40%), Gaps = 10/343 (2%)
Query: 154 MTKEEYTKGIKFAG--RINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQ 210
+T +YT I G + V +A ++ N L T YN L+ Y G +
Sbjct: 151 VTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAF 210
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
S F +K +I P +TYN LI+ + + + + E++D+ ++P V T+N LI
Sbjct: 211 STFGQMKSR-HIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA 269
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
Y K + M+ + P+ +Y ++ + +G +P I + + H
Sbjct: 270 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 329
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEK 388
+ A+I AY + D+ L+ + P + LLI+ + + E E+
Sbjct: 330 AQVYNAIIDAYVEHGPNDQAF---ILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEE 386
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
IN H+ V I + +R N +DK + +R G + YH +
Sbjct: 387 IINSLSNHRLIPDAVSYNTLISACCYRGN-IDKALDLQQRMHKYGIKSTVRTYHQLISGL 445
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
R+ EME + ++M + S IM AY+ G K
Sbjct: 446 GGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIK 488
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 142/334 (42%), Gaps = 59/334 (17%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN ++ G +F ++ + A + P+ +TYNT+I G + D +EA F+
Sbjct: 17 SYNVVIAGMWRAGRGGDAVEVFDEMTERA-VLPNHITYNTMID--GHIKGGD-LEAGFR- 71
Query: 252 IKDS----NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
++D L PN TYN L++G A G+ + M + ++PD TY +L G +
Sbjct: 72 LRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLS 131
Query: 308 HSGNLPRMEKIY-ELVKHHVDGKEF--PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE 364
+G+ M ++ + +K+ V ++ ++ +C K S+ + + + L+P
Sbjct: 132 RNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPT-- 189
Query: 365 YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
R N LI Y + E+E + + + K+ R I + NA L N
Sbjct: 190 -RVIYNT-LINGYCQTG---ELEGAFSTFGQMKS--------RHIKPDHITYNA---LIN 233
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
+ +AE R+ + +L EM++ ++ + +TF + AY
Sbjct: 234 GLCKAE----------------------RITNAQDLLMEMQDNGVNPTVETFNTLIDAYG 271
Query: 485 TCGQRRKVNQVLGLMCKNG-------YDVPVNAF 511
GQ K VL M +NG Y VNAF
Sbjct: 272 RTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 305
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN L+ A Y G DK L + + K I ++ TY+ LIS G ++ ME +Q+
Sbjct: 402 SYNTLISACCYRGNIDKALDLQQRMHKYG-IKSTVRTYHQLISGLGGAGRLNEMEYLYQK 460
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
+ +N+ P+ +N ++ Y K E++ + M
Sbjct: 461 MMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 496
>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
Length = 687
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/344 (22%), Positives = 138/344 (40%), Gaps = 10/344 (2%)
Query: 154 MTKEEYTKGIKFAG--RINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQ 210
+T +YT I G + V +A ++ N L T YN L+ Y G +
Sbjct: 332 VTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAF 391
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
S F +K +I P +TYN LI+ + + + + E++D+ ++P V T+N LI
Sbjct: 392 STFGQMKSR-HIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDA 450
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
Y K + M+ + P+ +Y ++ + +G +P I + + H
Sbjct: 451 YGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 510
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEK 388
+ A+I AY + D+ + M+ P + LLI+ + + E E+
Sbjct: 511 AQVYNAIIDAYVEHGPNDQAFILVEKMK---SNGISPSIVTYNLLIKGLCNQSQISEAEE 567
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
IN H+ V I + +R N +DK + +R G + YH +
Sbjct: 568 IINSLSNHRLIPDAVSYNTLISACCYRGN-IDKALDLQQRMHKYGIKSTVRTYHQLISGL 626
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
R+ EME + ++M + S IM AY+ G K
Sbjct: 627 GGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKA 670
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 141/334 (42%), Gaps = 59/334 (17%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN ++ G +F ++ + A + P+ +TYNT+I G + D +EA F
Sbjct: 198 SYNVVIAGMWRAGRGGDAVEVFDEMTERA-VLPNHITYNTMID--GHIKGGD-LEAGFS- 252
Query: 252 IKDS----NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
++D L PN TYN L++G A G+ + M + ++PD TY +L G +
Sbjct: 253 LRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLS 312
Query: 308 HSGNLPRMEKIY-ELVKHHVDGKEF--PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE 364
+G+ M ++ + +K+ V ++ ++ +C K S+ + + + L+P
Sbjct: 313 RNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPT-- 370
Query: 365 YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
R N LI Y + E+E + + + K+ R I + NA L N
Sbjct: 371 -RVIYNT-LINGYCQTG---ELEGAFSTFGQMKS--------RHIKPDHITYNA---LIN 414
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
+ +AE R+ + +L EM++ ++ + +TF + AY
Sbjct: 415 GLCKAE----------------------RITNAQDLLMEMQDNGVNPTVETFNTLIDAYG 452
Query: 485 TCGQRRKVNQVLGLMCKNG-------YDVPVNAF 511
GQ K VL M +NG Y VNAF
Sbjct: 453 RTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAF 486
>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
Length = 793
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/307 (19%), Positives = 133/307 (43%), Gaps = 9/307 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T + ++ A +GL D+ + F DLK ++ P +VTYN L+ VFG+ +E
Sbjct: 253 TASTVIAACGRDGLLDQAVAFFEDLKARGHV-PCVVTYNALLQVFGKAGNYTEALRVLKE 311
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++DS P+ TYN L Y A + + + M + ++P+T TY ++ YA+ G
Sbjct: 312 MEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGR 371
Query: 312 LPRMEKIYELVKHH---VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ +++ +K + + + LI M+ S+ T ++ +E + R W
Sbjct: 372 VDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSR--FTAMLEMLEEMSRSGCTPNRVTW 429
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+L + + +E+ + + + + ++S+Y RC +
Sbjct: 430 NTMLAV---CGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDE 486
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
S+G+ C + Y++ + + + Q +S++ +M + +++ ++ YA G
Sbjct: 487 MISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGN 546
Query: 489 RRKVNQV 495
+ +
Sbjct: 547 AAGIESI 553
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 132/313 (42%), Gaps = 13/313 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N +L G+ D + +K + S TYNTLIS +GR + + E
Sbjct: 428 TWNTMLAVCGKRGMEDYVTRVLNGMKS-CGVELSRDTYNTLISAYGRCGSRTYAFKMYDE 486
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ S +P + TYN L+ W + I M P+ +Y LLL+ YA GN
Sbjct: 487 MISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGN 546
Query: 312 LPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+E I K G FP ++R ++ A KC R++ +E + + + Y+P
Sbjct: 547 AAGIESIE---KEVYVGTIFPSWVILRTLVIANFKCR---RLEGVEKAFQEVKAQGYKPD 600
Query: 369 LNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L + ++ +YAK + L + D+ + + ++ Y + N + +
Sbjct: 601 LVIFNSMLAMYAK-NGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKIL 659
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
K+ +S+ + Y++ + + Q ++E + +L EM + T+ + YA+
Sbjct: 660 KQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASL 719
Query: 487 GQRRKVNQVLGLM 499
+ +V+ M
Sbjct: 720 EMFNEAREVVNYM 732
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N++L Y NGL K +F D K++ +SP ++TYN+L+ ++ + E +++
Sbjct: 604 FNSMLAMYAKNGLYSKATEMF-DSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQL 662
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
K S + P+V +YN +I G+ + + + I M A + P TY L+ GYA
Sbjct: 663 KSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMF 722
Query: 313 PRMEKIYELVKHH 325
++ + HH
Sbjct: 723 NEAREVVNYMIHH 735
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 13/148 (8%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218
Y+K + I L+ DL TYN+L+ Y + S + + + + LK
Sbjct: 617 YSKATEMFDSIKQSGLSPDLI------------TYNSLMDMYAKSNESWEAEKILKQLKS 664
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
+ + P +V+YNT+I+ F + L+ + E+ ++P V TY+ L+ GY + M+
Sbjct: 665 -SQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFN 723
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
+ E+ M + P TY ++ Y
Sbjct: 724 EAREVVNYMIHHNLKPMELTYRRVVDSY 751
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 180 AEAANKHLKT------IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
AE K LK+ + +YN ++ + GL + Q + ++ + ++P +VTY+TL+
Sbjct: 655 AEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADG-MAPCVVTYHTLV 713
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
+ L + + + NL P TY ++ Y A + + E
Sbjct: 714 GGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREF 763
>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
[Oryza sativa Japonica Group]
gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 793
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/307 (19%), Positives = 133/307 (43%), Gaps = 9/307 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T + ++ A +GL D+ + F DLK ++ P +VTYN L+ VFG+ +E
Sbjct: 253 TASTVIAACGRDGLLDQAVAFFEDLKARGHV-PCVVTYNALLQVFGKAGNYTEALRVLKE 311
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++DS P+ TYN L Y A + + + M + ++P+T TY ++ YA+ G
Sbjct: 312 MEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGR 371
Query: 312 LPRMEKIYELVKHH---VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ +++ +K + + + LI M+ S+ T ++ +E + R W
Sbjct: 372 VDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSR--FTAMLEMLEEMSRSGCTPNRVTW 429
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+L + + +E+ + + + + ++S+Y RC +
Sbjct: 430 NTMLAV---CGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDE 486
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
S+G+ C + Y++ + + + Q +S++ +M + +++ ++ YA G
Sbjct: 487 MISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGN 546
Query: 489 RRKVNQV 495
+ +
Sbjct: 547 AAGIESI 553
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 132/313 (42%), Gaps = 13/313 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N +L G+ D + +K + S TYNTLIS +GR + + E
Sbjct: 428 TWNTMLAVCGKRGMEDYVTRVLNGMKS-CGVELSRDTYNTLISAYGRCGSRTYAFKMYDE 486
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ S +P + TYN L+ W + I M P+ +Y LLL+ YA GN
Sbjct: 487 MISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGN 546
Query: 312 LPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+E I K G FP ++R ++ A KC R++ +E + + + Y+P
Sbjct: 547 AAGIESIE---KEVYVGTIFPSWVILRTLVIANFKCR---RLEGVEKAFQEVKAQGYKPD 600
Query: 369 LNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L + ++ +YAK + L + D+ + + ++ Y + N + +
Sbjct: 601 LVIFNSMLAMYAK-NGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKIL 659
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
K+ +S+ + Y++ + + Q ++E + +L EM + T+ + YA+
Sbjct: 660 KQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASL 719
Query: 487 GQRRKVNQVLGLM 499
+ +V+ M
Sbjct: 720 EMFNEAREVVNYM 732
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N++L Y NGL K +F D K++ +SP ++TYN+L+ ++ + E +++
Sbjct: 604 FNSMLAMYAKNGLYSKATEMF-DSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQL 662
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
K S + P+V +YN +I G+ + + + I M A + P TY L+ GYA
Sbjct: 663 KSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMF 722
Query: 313 PRMEKIYELVKHH 325
++ + HH
Sbjct: 723 NEAREVVNYMIHH 735
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 13/148 (8%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218
Y+K + I L+ DL TYN+L+ Y + S + + + + LK
Sbjct: 617 YSKATEMFDSIKQSGLSPDLI------------TYNSLMDMYAKSNESWEAEKILKQLKS 664
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
+ + P +V+YNT+I+ F + L+ + E+ ++P V TY+ L+ GY + M+
Sbjct: 665 -SQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFN 723
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
+ E+ M + P TY ++ Y
Sbjct: 724 EAREVVNYMIHHNLKPMELTYRRVVDSY 751
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 180 AEAANKHLKT------IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
AE K LK+ + +YN ++ + GL + Q + ++ + ++P +VTY+TL+
Sbjct: 655 AEKILKQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADG-MAPCVVTYHTLV 713
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
+ L + + + NL P TY ++ Y A + + E
Sbjct: 714 GGYASLEMFNEAREVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREF 763
>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g03560, mitochondrial; Flags: Precursor
gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 87/397 (21%), Positives = 167/397 (42%), Gaps = 29/397 (7%)
Query: 113 LFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV 172
L + N +FV ++ +P +A W R+Q Y + E Y + +V
Sbjct: 111 LIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNL--ECYVSLVDVLALAKDV 168
Query: 173 DLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
D + +E T+ NAL+ ++ G+ ++ ++R + KE I P++ TYN
Sbjct: 169 DRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKM-KENGIEPTLYTYNF 227
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L++ + VD E F+ ++ + P++ TYN +I GY A K E + M+
Sbjct: 228 LMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRG 287
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH---HVDGKEFPLIRAMICAYSKCSVTD 348
D TY+ +++ + +Y+ + V F L+ +C K + +
Sbjct: 288 HEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGK--LNE 345
Query: 349 RIKKIEALMRLIPEKEYRPWLNV--LLIRVYAK----EDCLEEMEKSINDAFEHKTSVTT 402
E ++R K +P + + +LI YAK ED + + + I++ F K V T
Sbjct: 346 GYTVFENMIR----KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGF--KPDVVT 399
Query: 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
+ +V+ + V++ ++ G + Y S + RV+E E + +
Sbjct: 400 YSV---VVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFE 456
Query: 463 EMENYKIDCSKKTFWIMYYAYATC-GQRRKVNQVLGL 498
EM C++ ++ Y A + RKV++ + L
Sbjct: 457 EMSEK--GCTRDSY--CYNALIDAFTKHRKVDEAIAL 489
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 81/198 (40%), Gaps = 23/198 (11%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C + + GY E M + GS+P +A+ YT I +
Sbjct: 336 GLCKEGKLNEGYTVFENMIRKGSKPNVAI--------------------YTVLIDGYAKS 375
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+V+ A L ++ K + TY+ ++ NG ++ F + + ++ + +
Sbjct: 376 GSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDG-LAINSMF 434
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y++LI G+ VD E F+E+ + + + + YN LI + + +++ M+
Sbjct: 435 YSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRME 494
Query: 289 AGPVMPDT-NTYLLLLRG 305
T TY +LL G
Sbjct: 495 EEEGCDQTVYTYTILLSG 512
>gi|297852926|ref|XP_002894344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340186|gb|EFH70603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 650
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 2/152 (1%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
GR+ VD A ++F E K I +YN+L+ NG D+ F++++ E ++P
Sbjct: 488 GRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ-EKGLNPD 546
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+VTY+TL+ FG+ V+ + F+E+ PN+ TYN L+ + + ++Y
Sbjct: 547 VVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKSGRTAEAVDLYT 606
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
MK + PD+ TY +L R + S R+ +
Sbjct: 607 KMKQQGLTPDSITYTVLERLQSGSHGKSRIRR 638
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNGLSDKCQSL 212
MT+ Y+ ++ ++ +V A LF + + +K +Y ++L + G + + +
Sbjct: 370 MTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEM 429
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
+ ++ ++ +++ YNT+ S G+L + H+ F+++K SP++FTYN LI+ +
Sbjct: 430 LSKIHEKGVVTDTMM-YNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSFG 488
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ I++ ++ PD +Y L+ +G++
Sbjct: 489 RVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDV 528
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 72/323 (22%), Positives = 127/323 (39%), Gaps = 17/323 (5%)
Query: 175 AADLFAEAA-NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A D++ E H I YN LL A + +K +F D+KK + +Y +I
Sbjct: 222 AFDVYCEIRRGGHKLDIFAYNMLLDALAKD---EKACQVFEDMKKR-HCRRDEYSYTIMI 277
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
GR+ D F E+ L+ NV YN L+ M K +++ M
Sbjct: 278 RTMGRIGKYDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCR 337
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-DGKEFPLIRAMICAYSKCSVTDRIKK 352
P+ TY L+L G L R++ I E+ K ++ G L+R + SK +
Sbjct: 338 PNEYTYSLVLNLLVAEGQLVRLDGIVEISKRYMTQGIYSYLVRTL----SKLGHVSEAHR 393
Query: 353 IEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS 412
+ M P K R +L + +E +E + K VT + + S+
Sbjct: 394 LFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIE--MLSKIHEKGVVTDTMMYNTVFSA 451
Query: 413 YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS 472
+ + + + ++ + G Y+ + + V+E ++ +E+E + DC
Sbjct: 452 LGKLKQISHIHDLFEKMKKDGPSPDIFTYNILISSFGRVGEVDEAINIFEELE--RSDC- 508
Query: 473 KKTFWIMYYAYATC-GQRRKVNQ 494
K I Y + C G+ V++
Sbjct: 509 -KPDIISYNSLINCLGKNGDVDE 530
>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 647
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 82/153 (53%), Gaps = 6/153 (3%)
Query: 173 DLAADLFAEAAN--KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
D+A F A K+ + Y +L+ NG+ D +S+F K E + ++ + N
Sbjct: 125 DVAIRFFTWAGKQKKYTHNLECYVSLIDVLATNGVLDSVKSVFSKFK-EMGLIMTVYSSN 183
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
+LI FG L +V+ + ++ +K++ + P++F+YN+L+ G + + E ++++M+ G
Sbjct: 184 SLIKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVNSKFIESAERVFEVMENG 243
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+ PD TY +++GY G + K +E +K
Sbjct: 244 KIGPDVVTYNTMIKGYCEVG---KTRKAFEKLK 273
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/381 (20%), Positives = 153/381 (40%), Gaps = 15/381 (3%)
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
+F+ +L ++P +A+ W +Q Y + E Y I +D +F++
Sbjct: 112 SFILRSTELQTKPDVAIRFFTWAGKQKKYTHNL--ECYVSLIDVLATNGVLDSVKSVFSK 169
Query: 182 AANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
L T+ + N+L+ ++ G+ ++ ++R +K E I PS+ +YN L++
Sbjct: 170 FKEMGLIMTVYSSNSLIKSFGNLGMVEEVLWVWRRMK-ENGIEPSLFSYNFLVNGLVNSK 228
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
++ E F+ +++ + P+V TYN +I GY K E + M+ V PD TY+
Sbjct: 229 FIESAERVFEVMENGKIGPDVVTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAPDKITYM 288
Query: 301 LLLRGYAHSGNLPRMEKIYELVKHHVD--GKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
L++ G+ +Y H +D G E P + C R++
Sbjct: 289 TLIQACYAEGDFDSCLGLY----HEMDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVFEN 344
Query: 359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIM-RCIVSSYFRCN 417
+I K + + + + + C E + K + + IV+S +
Sbjct: 345 MI-SKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSG 403
Query: 418 AVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW 477
+D+ +++ G + Y S + RV+E E + EM +
Sbjct: 404 RLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYN 463
Query: 478 IMYYAYATCGQRRKVNQVLGL 498
+ A A CG K+++ L L
Sbjct: 464 ALIDALAKCG---KIDEALAL 481
Score = 38.5 bits (88), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 61/283 (21%), Positives = 102/283 (36%), Gaps = 37/283 (13%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C + GY E M G + +A+ YT I +
Sbjct: 328 GLCKDGKRVEGYTVFENMISKGCKANVAI--------------------YTALIDSNAKC 367
Query: 170 NNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
N+ A LF + L+ TY ++ + +G D+ + + ++ + +
Sbjct: 368 GNMGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALE-YMEFCSGKGVAVNAMF 426
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQ 285
Y++LI G+ VD E F E+ P+ + YN LI GK++E + +
Sbjct: 427 YSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYNALIDALAKC---GKIDEALALSK 483
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM------IC 339
M+ TY +L+ G R E+ L +D P A +C
Sbjct: 484 RMEVDGCDQTVYTYTILITGLFRE---HRNEEALTLWDLMIDKGITPTAAAFRALSTGLC 540
Query: 340 AYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC 382
K + +I A M +IPE + +N+L KE C
Sbjct: 541 LSGKVARACKILDEMAPMGVIPETAFDDMINILCKAGRIKEAC 583
>gi|302772122|ref|XP_002969479.1| hypothetical protein SELMODRAFT_61155 [Selaginella moellendorffii]
gi|300162955|gb|EFJ29567.1| hypothetical protein SELMODRAFT_61155 [Selaginella moellendorffii]
Length = 489
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 87/203 (42%), Gaps = 11/203 (5%)
Query: 121 YAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEE---YTKGIKFAGRINNVDLAAD 177
Y E++K++ R+ALE W + P K + Y+ I+ G N
Sbjct: 1 YQVCEVLKRVRDW-RVALEFFTWAK-----SVPFFKHDAMNYSMMIRVLGTCGNYTQGRK 54
Query: 178 LFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
LF E K LK + T N ++ Y D LFR+ + P + TY LI +
Sbjct: 55 LFDEMREKGLKPDLVTVNNMIKCYGCANRVDDAMDLFREFP-DFGFEPDVCTYALLIDLL 113
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
G+ V + F E++ L P+ + +N +IA + G +E MK + P T
Sbjct: 114 GKAGRVSEVRKLFLELQSRKLKPDEYVFNSMIANFSKWKDLGLADEALDYMKVCGIRPST 173
Query: 297 NTYLLLLRGYAHSGNLPRMEKIY 319
TY ++L YA S N EKIY
Sbjct: 174 VTYAIVLNMYAKSLNFMLAEKIY 196
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 8/189 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYN---GLSDKCQSLFR 214
Y I G+ V LF E ++ LK +N+++ + GL+D+
Sbjct: 106 YALLIDLLGKAGRVSEVRKLFLELQSRKLKPDEYVFNSMIANFSKWKDLGLADEAL---- 161
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
D K I PS VTY +++++ + L E + E +SNL P+++ YN I + A
Sbjct: 162 DYMKVCGIRPSTVTYAIVLNMYAKSLNFMLAEKIYCEYLNSNLPPDLYVYNNAILFFGLA 221
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
+ E + ++ ++PD +Y ++ +A G P +K ++ + +
Sbjct: 222 GRCREAEWAVEDIEKAGLVPDKFSYCTIISAWARQGCAPDAKKWFDKARSRGITPSPEMC 281
Query: 335 RAMICAYSK 343
A+I AY K
Sbjct: 282 NALIDAYIK 290
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 123/311 (39%), Gaps = 33/311 (10%)
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
D +E + P +VT N +I +G VD F+E D P+V TY LI A
Sbjct: 57 DEMREKGLKPDLVTVNNMIKCYGCANRVDDAMDLFREFPDFGFEPDVCTYALLIDLLGKA 116
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
+V +++ +++ + PD + ++ ++ +L ++ + +K
Sbjct: 117 GRVSEVRKLFLELQSRKLKPDEYVFNSMIANFSKWKDLGLADEALDYMK----------- 165
Query: 335 RAMICAYSKCSVTDRI---KKIEALMRLIPEKEYRPWLNVLL----------IRVYAKED 381
+C +VT I ++L ++ EK Y +LN L I +
Sbjct: 166 ---VCGIRPSTVTYAIVLNMYAKSLNFMLAEKIYCEYLNSNLPPDLYVYNNAILFFGLAG 222
Query: 382 CLEEMEKSINDAFEHKTSVTTVRIMRC-IVSSYFRCNAVDKLANFVKRAESAGWRLCRSL 440
E E ++ D K + + C I+S++ R + +A S G +
Sbjct: 223 RCREAEWAVEDI--EKAGLVPDKFSYCTIISAWARQGCAPDAKKWFDKARSRGITPSPEM 280
Query: 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
++ + Y +E + ++L M + + + +T+ ++ Y C + V+ + M
Sbjct: 281 CNALIDAYIKALDLEPVAAILDAMPGWGVKATLQTYTYLFNYYCECC-KEYVDLLRDYMR 339
Query: 501 KNGYDVPVNAF 511
K G+ P + F
Sbjct: 340 KTGH--PADKF 348
>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 106/240 (44%), Gaps = 15/240 (6%)
Query: 113 LFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV 172
L + N +FV +L RP LAL+ W +Q Y + + Y I ++
Sbjct: 56 LIKLSPNFVSFVLKSMELQKRPDLALKFFTWAGKQKKYTHNL--QCYVSSIDVLAINGDL 113
Query: 173 DLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
D +F + L + N+L+ ++ G+ ++ ++R +K E + PS+ TYN
Sbjct: 114 DNVKSVFCKFRGMGFLMNVSAANSLIKSFGSLGMVEELLWVWRGMK-ENGVEPSLFTYNF 172
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L++ + ++ E + +++ + P+V TYN +I GY K E ++ M+
Sbjct: 173 LLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRN 232
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD--GKEFP-----LIRAMICAYSKC 344
V PD TY+ L++ G+ +Y H +D G E P L+ +C KC
Sbjct: 233 VAPDKITYMTLIQACYAEGDFDLCLSLY----HEMDENGLEIPPHAYSLVIGGLCKEGKC 288
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 101/290 (34%), Gaps = 51/290 (17%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLAL--EVLNWRRRQAGYGTPM------TKEEYTK 161
G C + GYA E M Q G + +A+ +++ + G M KE
Sbjct: 281 GLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEP 340
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSD---------KCQSL 212
+ G + N + EA ++L+ + A +Y+ L D + + L
Sbjct: 341 DVVTYGVVVNCMCKSGRLDEAM-EYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKL 399
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
F ++ K+ P YN LI + D A F+ ++D V+TY +I G
Sbjct: 400 FEEMVKKG-CPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLF 458
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
+ +++ MM + P + L G SG + R
Sbjct: 459 REHKNEEALKMWDMMIDKGITPTAAAFRALSIGLCLSGKVAR------------------ 500
Query: 333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC 382
C + D + A M +IPE + LNVL KE C
Sbjct: 501 ----------ACKLLDEL----APMGVIPETAFEDMLNVLCKAGRIKEAC 536
>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
Length = 637
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 3/205 (1%)
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
AFV +++ L + + LE ++ G Y G++ V ++LF +
Sbjct: 395 AFVSMLEVLCNAEK-TLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDK 453
Query: 182 -AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
N + + TYN ++ +Y GL DK LF ++ + ++ P +VTYN+LI+ G+
Sbjct: 454 MKTNGIIPDVFTYNIMISSYGRVGLVDKASELF-EVMEASSCKPDVVTYNSLINCLGKHG 512
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
+D F+E+++ P+VFTY+ LI + + ++ M + P+ TY
Sbjct: 513 DLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYN 572
Query: 301 LLLRGYAHSGNLPRMEKIYELVKHH 325
+LL G K+YE +K
Sbjct: 573 ILLDCLERRGKTEEAHKLYETMKQQ 597
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I GR+ VD A++LF K + TYN+L+ +G D+ LF++++
Sbjct: 466 YNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQ 525
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E P + TY+ LI FG+ V+ + F E+ +PN+ TYN L+
Sbjct: 526 -EKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLD---CLERR 581
Query: 278 GKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
GK EE +Y+ MK ++PD+ TY +L R + S R+ K
Sbjct: 582 GKTEEAHKLYETMKQQGLIPDSITYSILERLESRSQRTVRIRK 624
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 122/287 (42%), Gaps = 33/287 (11%)
Query: 51 CAPATHTVFPTLVRL------LSETLTYPDARVRKDLTQTVSALRD--ELLANVDDLDKV 102
C P +T + L+R+ S+ L++ D V K + A E L +DKV
Sbjct: 252 CVPDAYT-YTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKV 310
Query: 103 FRVLDE--KGSCLFRRHSNGYAF---VELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKE 157
VL + + C N + + ++++ G RL EVL+ R M +
Sbjct: 311 IFVLSKMVENDC----QPNQFTYSITLDILATEGQLHRLN-EVLDICSRF------MNRS 359
Query: 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL----F 213
Y+ +K + + A ++F N H K G +A + M L + ++L
Sbjct: 360 IYSYLVKSLCKSGHASEAHNVFCRMWNSHEK--GDRDAFVS--MLEVLCNAEKTLEAIDL 415
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+ E I + YN + S G+L V + F ++K + + P+VFTYN +I+ Y
Sbjct: 416 LHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGR 475
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ K E++++M+A PD TY L+ G+L +++
Sbjct: 476 VGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFK 522
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/393 (19%), Positives = 144/393 (36%), Gaps = 54/393 (13%)
Query: 143 WRRRQAGYG------TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL 196
W R +GY + E +KG + + D+FA YN L
Sbjct: 180 WGLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFA------------YNML 227
Query: 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256
L A G+ D+ +F D+K++ + P TY LI + G+ + F E+
Sbjct: 228 LDALAKAGMVDQAFQVFEDMKQKHCV-PDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKG 286
Query: 257 LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
N+ +N +I M KV + M P+ TY + L A G L R+
Sbjct: 287 CVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLN 346
Query: 317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI-------------------------- 350
++ ++ ++ + + +C S +
Sbjct: 347 EVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNA 406
Query: 351 -KKIEA--LMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME--KSINDAFEHKTSVTTVRI 405
K +EA L+ ++PEK + + + V++ L+++ ++ D + + V
Sbjct: 407 EKTLEAIDLLHMMPEKGIVTDVGMYNM-VFSALGKLKQVSFISNLFDKMKTNGIIPDVFT 465
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
++SSY R VDK + + E++ + Y+S + ++E + KEM+
Sbjct: 466 YNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQ 525
Query: 466 NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL 498
D T+ I+ + G+ KV L
Sbjct: 526 EKGYDPDVFTYSILIECF---GKSNKVEMACSL 555
>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Vitis vinifera]
Length = 725
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/360 (22%), Positives = 148/360 (41%), Gaps = 22/360 (6%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
+K G+ V+ A +F + + K T TYN+++ M G +K L+ ++ E +
Sbjct: 166 VKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGD 225
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
P VTY+ LI+ FG+L D + F E+K++ L P Y ++ Y + G+VE
Sbjct: 226 CLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIY---FKLGRVE 282
Query: 282 E---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338
+ + Q MK TY L++G +G + I+ + + LI +I
Sbjct: 283 KALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLI 342
Query: 339 CAYSKCS-VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAF--- 394
K + D IK E + L + P NV+ K L E + ++AF
Sbjct: 343 NLLGKAGRLADAIKLFEEMESL----QCTP--NVVTYNTVIK--ALFESKARASEAFLWY 394
Query: 395 ---EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451
+ V + ++ + + N V+K ++ + G+ C + Y S +
Sbjct: 395 EKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKA 454
Query: 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
+R E + +E+ S + + +M CG+ + + M K G + V A+
Sbjct: 455 KRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAY 514
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 17/190 (8%)
Query: 122 AFVELMKQLGSRPR--LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF 179
A+ L+ LG R A E+ R GY + Y IK G+ + A DLF
Sbjct: 443 AYCSLINALGKAKRYEAANELFQELRENCGYSSARV---YAVMIKHLGKCGRLSEAVDLF 499
Query: 180 AEAANKHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
E +K +G YNAL+ + G++D+ SL R ++ E +P + ++N ++
Sbjct: 500 NE-----MKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTME-ENGCTPDLNSHNIIL 553
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F R F +K+S + P+V +YN ++ A M+ + ++ + M +
Sbjct: 554 NGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFE 613
Query: 294 PDTNTYLLLL 303
D TY +L
Sbjct: 614 YDLITYSSIL 623
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 4/221 (1%)
Query: 92 LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYG 151
LL L ++ +E S + N + ++K L A E W + G
Sbjct: 344 LLGKAGRLADAIKLFEEMES--LQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENG 401
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNGLSDKCQ 210
+ Y+ I + N V+ A L E K Y +L+ A +
Sbjct: 402 VVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAAN 461
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
LF++L++ S + V Y +I G+ + F E+K +P+V+ YN L++G
Sbjct: 462 ELFQELRENCGYSSARV-YAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSG 520
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ M + + + M+ PD N++ ++L G+A +G
Sbjct: 521 MVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGG 561
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAG 290
++ V G+ +V+ + F +IK P TYN +I M KV E+Y +M G
Sbjct: 165 IVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEG 224
Query: 291 PVMPDTNTYLLLLRGYAHSG 310
+PDT TY L+ + G
Sbjct: 225 DCLPDTVTYSALIAAFGKLG 244
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 81/209 (38%), Gaps = 4/209 (1%)
Query: 163 IKFAGRINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
I G+ + A LF E + + + TYN ++ A + L+ + KE
Sbjct: 342 INLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENG 401
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
+ PS TY+ LI F + V+ +E+ + +P Y LI A +
Sbjct: 402 VVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAAN 461
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAY 341
E++Q ++ Y ++++ G L ++ +K + A++
Sbjct: 462 ELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGM 521
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+ +TD + +L+R + E P LN
Sbjct: 522 VRVGMTD---EAHSLLRTMEENGCTPDLN 547
>gi|168045822|ref|XP_001775375.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673320|gb|EDQ59845.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 406
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 84/338 (24%), Positives = 142/338 (42%), Gaps = 68/338 (20%)
Query: 116 RHSNGYAFVELMKQLGSRPR--LALEV-LNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV 172
R ++ +A L+ LG + + L LEV W + Q Y + ++K I G+ +
Sbjct: 2 RQADWFA---LLAALGKQSKWTLILEVTFRWMQEQKWY--RLDNGFHSKLIVTMGKAKQL 56
Query: 173 DLAADLFAEAA-NKHLKTIGTYNALLGAYMYN-----GLSDKCQSLFRDLKKEANISPSI 226
+A F E N H YNAL+ A++ G + Q LF ++K +AN P +
Sbjct: 57 RMAVWFFKEVKRNGHRPDTSLYNALITAHLQAEDKRIGFAKALQ-LFEEMKTKANCKPDL 115
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTYN L+ ++ + +E F+E++ + PN+ +YN +I Y GK ++ QM
Sbjct: 116 VTYNILLRGSAQVRDILQVERFFEEMEVEKIHPNLISYNGVIGAY------GKAGDLVQM 169
Query: 287 MKAGPVM-------PDTNTYLLLLRGYAHSGNLPRMEKIYELV-------KHHVDGKEFP 332
K M PDT T L+ Y + + +ME++++ + D K +
Sbjct: 170 EKTLFTMRILKHIKPDTVTSNTLIESYGYGRDFVKMEQVFKSMTAAKNKQTSRPDAKTYN 229
Query: 333 LIRAMICAYSK-------CSVTD------RIKKIEALMRLIPE----------------- 362
++ A + CS + ++ E LM E
Sbjct: 230 ILMASYARLGEVGKMEWSCSRMEAANFKLNLRSYEILMTGYGEVGAIASMSECFYQMLQA 289
Query: 363 --KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT 398
+ + LN +L R Y K +C EE E+ +NDA +T
Sbjct: 290 GMQPQKSTLNAML-RAYCKHNCFEEAEELLNDALGWQT 326
>gi|242064536|ref|XP_002453557.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
gi|241933388|gb|EES06533.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
Length = 390
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 2/160 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I GR+ VD A++LF E + K + TYN+++ NG D+ LF+D++
Sbjct: 220 YNIMISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQ 279
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E P + TY+ LI FG+ VD + F E+ PN+ TYN L+
Sbjct: 280 -EKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDCLERHGKT 338
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
+ ++Y+ +K + PD+ TY +L R + S R+ K
Sbjct: 339 REAHKLYETLKQQGLAPDSITYSILERLESRSQRTARIRK 378
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Query: 175 AADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A DL K + T +G YN + A SL+ +K ++P + TYN +I
Sbjct: 166 AIDLLHMMPEKGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANG-VAPDVFTYNIMI 224
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
S FGR+ LVD F+E+ DS+ P+V TYN +I + +++ M+
Sbjct: 225 SSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYD 284
Query: 294 PDTNTYLLLLRGYAHS 309
PD TY +L+ + S
Sbjct: 285 PDVFTYSILIECFGKS 300
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 52/102 (50%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E I+ + YN + S G+L V M + + ++K + ++P+VFTYN +I+ + +
Sbjct: 175 EKGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFGRVGLVD 234
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
K E+++ M PD TY ++ +G+L +++
Sbjct: 235 KASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFK 276
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/277 (18%), Positives = 114/277 (41%), Gaps = 14/277 (5%)
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
+++ YNT+I G+ +VD ++ +S+ PN FTY+ ++ T ++ EI
Sbjct: 44 NLIAYNTVIEALGKNKMVDKAIFMLSKMIESDCQPNQFTYSIMLDVLATGGQLHRLNEIL 103
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSK 343
+ + + Y L++ SG+ ++ + H G + + +
Sbjct: 104 DICSG---HLNRSVYSYLVKALCKSGHASEAHSVFCRMWSSHEKGDRDAFVSML---EAL 157
Query: 344 CSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME--KSINDAFEHKTSVT 401
C+ + I+ L+ ++PEK + + I +++ L+++ S+ D +
Sbjct: 158 CNAEKTAEAID-LLHMMPEKGITTDVGMYNI-IFSALGKLKQVSFMSSLYDKMKANGVAP 215
Query: 402 TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL 461
V ++SS+ R VDK + + + + + Y+S + ++E +
Sbjct: 216 DVFTYNIMISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLF 275
Query: 462 KEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL 498
K+M+ D T+ I+ + G+ KV+ L
Sbjct: 276 KDMQEKGYDPDVFTYSILIECF---GKSNKVDMACSL 309
>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
[Vitis vinifera]
gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
Length = 821
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 127/307 (41%), Gaps = 9/307 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T + ++ A GL D+ + F LK E ++ + TYN+L+ VFG+ + + +E
Sbjct: 282 TCSTVISACGREGLLDEARKFFARLKSEGYVAGTF-TYNSLLQVFGKAGIYSEALSILKE 340
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ +N P++ TYN L+A Y+ A + + M +MP+ TY ++ Y +G
Sbjct: 341 MEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGK 400
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ + +K A++ K S + + + MR N
Sbjct: 401 EDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNT 460
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVT---TVRIMRCIVSSYFRCNAVDKLANFVKR 428
+L K M K +N F S ++ +Y RC + + +
Sbjct: 461 MLAMCGNK-----GMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEE 515
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
AG+ C + Y++ + A + E ESV+ +M++ ++ ++ +M YA G
Sbjct: 516 MIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGN 575
Query: 489 RRKVNQV 495
R + ++
Sbjct: 576 GRGIEKI 582
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/314 (20%), Positives = 139/314 (44%), Gaps = 7/314 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ AY G DK S FR +K E+ P++ TYN ++ + G+ ++ M +
Sbjct: 387 TYTTVINAYGKAGKEDKALSFFRQMK-ESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCD 445
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + +PN T+N ++A M V +++ MK+ P+ +T+ L+ Y G+
Sbjct: 446 MRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGS 505
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN- 370
+ K+YE + P + + + + E+++ + K ++P
Sbjct: 506 QIDVVKMYE---EMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETS 562
Query: 371 -VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
L++ YAK +EK I + + + ++R +V + F+ A+ + +
Sbjct: 563 YSLMLNCYAKGGNGRGIEK-IEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEF 621
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
G++ L++S + ++A + + +L+ + + T+ + YA G+
Sbjct: 622 CKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGEC 681
Query: 490 RKVNQVLGLMCKNG 503
K ++L + K+G
Sbjct: 682 WKGEEILKGIQKSG 695
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ Y G K + + + ++K P +V+YNT+I F R L+ E
Sbjct: 667 TYNSLMDMYARGGECWKGEEILKGIQKSGG-KPDLVSYNTVIKGFCRQGLMQEAIRTLSE 725
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
+ S + P + TYN +AGY M+ +VEE+ M P+ TY +++ GY
Sbjct: 726 MTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGY 780
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 74/335 (22%), Positives = 132/335 (39%), Gaps = 54/335 (16%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N +L G+ +FR++K P+ T+N LI +GR + ++E
Sbjct: 457 TWNTMLAMCGNKGMHKYVNRVFREMKS-CGFEPNRDTFNALIGAYGRCGSQIDVVKMYEE 515
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + +P V TYN L+ W E + MK+ P+ +Y L+L YA GN
Sbjct: 516 MIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGN 575
Query: 312 LPRMEKIYELVKHHVDGKEFP--------------------------------------L 333
+EKI E + +G FP L
Sbjct: 576 GRGIEKIEEEI---YNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVL 632
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKE-DCL--EEMEK 388
+M+ ++K + DR + ++RLI E +P L L+ +YA+ +C EE+ K
Sbjct: 633 FNSMLSIFAKNKMYDRAHE---MLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILK 689
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
I + V+ +++ A+ L+ +G R C Y++ + Y
Sbjct: 690 GIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMT----ISGIRPCIVTYNTFVAGY 745
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
+ + E+E V+ M + ++ T+ I+ Y
Sbjct: 746 SGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGY 780
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 27/187 (14%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P +V +N+++S+F + + D + I++S L P++ TYN L+ Y K EEI
Sbjct: 628 PDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEI 687
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+ ++ PD +Y +++G+ G + E I L + + G IR I Y+
Sbjct: 688 LKGIQKSGGKPDLVSYNTVIKGFCRQGLM--QEAIRTLSEMTISG-----IRPCIVTYNT 740
Query: 344 C----SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC--------------LEE 385
S ++E ++ + + + RP N L ++ C + E
Sbjct: 741 FVAGYSGKGMFSEVEEVISYMIQHDCRP--NELTYKIVVDGYCKGKKYKEAMDFVSNITE 798
Query: 386 MEKSIND 392
M+KS +D
Sbjct: 799 MDKSFDD 805
>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
Length = 1025
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 7/140 (5%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV---FGRLLLVDHM 245
T TY AL+ AY NG D+ +F+D+ + +++TY++LIS GR L +
Sbjct: 334 TATTYTALISAYGKNGQLDRALQIFQDMVRR-GCERNVITYSSLISACEKAGRWELALEL 392
Query: 246 EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
F+E+ PNV TYN LIA W K +E+++ M+ PD T+ L+
Sbjct: 393 ---FREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAVTFGGLIAA 449
Query: 306 YAHSGNLPRMEKIYELVKHH 325
Y +G+ R +E +K H
Sbjct: 450 YDRAGHWRRALTAFEQMKAH 469
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 106/240 (44%), Gaps = 18/240 (7%)
Query: 95 NVDDLDKVFRVLDEKGSCLFRRHSNGY-----AFVELMKQL--GSRPRLALEVLNWRRRQ 147
V+DL +V R L + S + Y A L+K+L R A E+ +W R
Sbjct: 124 TVEDLLEVVRRLPPEASAVKAIGQGLYYFDSGALAALLKELNKSGHVRRAQELFDWLRGL 183
Query: 148 AGYGT--PMTKE-EYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYN 203
P+ YT I G + A +L AE ++ ++ + TY+AL+ +
Sbjct: 184 DDSHDLYPLCNTMTYTTMISQCGTQQQLRRALELVAEMRSRGIQCNVHTYSALMNVCIKG 243
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
D ++R + E +P++VTYNTLI V+G+ + ++ + P + T
Sbjct: 244 NELDLALDVYRQMLAE-GCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRT 302
Query: 264 YNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
YN +I + M G+ +E IY+ M A P TY L+ Y +G L R +I++
Sbjct: 303 YNTVI---IACNMSGQAQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQ 359
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 2/164 (1%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNA 195
A E L R G T YT I G+ +D A +F + + + + TY++
Sbjct: 316 AQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSS 375
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ A G + LFR++ E P++VTYN+LI+ + + + F++++
Sbjct: 376 LISACEKAGRWELALELFREMHTE-GCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHR 434
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
P+ T+ LIA Y A W + ++ MKA PD+ Y
Sbjct: 435 GCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVY 478
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 1/154 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN ++ A +G + + ++ + A P+ TY LIS +G+ +D F
Sbjct: 300 IRTYNTVIIACNMSGQAQEALRIYERMLA-AGAQPTATTYTALISAYGKNGQLDRALQIF 358
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
Q++ NV TY+ LI+ A W E+++ M P+ TY L+ A
Sbjct: 359 QDMVRRGCERNVITYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQG 418
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+ ++++E ++H + +I AY +
Sbjct: 419 AQWEKAQEMFEQMQHRGCKPDAVTFGGLIAAYDR 452
>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
Length = 702
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/307 (19%), Positives = 133/307 (43%), Gaps = 9/307 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T + ++ A +GL D+ + F DLK ++ P +VTYN L+ VFG+ +E
Sbjct: 162 TASTVIAACGRDGLLDQAVAFFEDLKARGHV-PCVVTYNALLQVFGKAGNYTEALRVLKE 220
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++DS P+ TYN L Y A + + + M + ++P+T TY ++ YA+ G
Sbjct: 221 MEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGR 280
Query: 312 LPRMEKIYELVKHH---VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ +++ +K + + + LI M+ S+ T ++ +E + R W
Sbjct: 281 VDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSR--FTAMLEMLEEMSRSGCTPNRVTW 338
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+L + + +E+ + + + + ++S+Y RC +
Sbjct: 339 NTMLAV---CGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDE 395
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
S+G+ C + Y++ + + + Q +S++ +M + +++ ++ YA G
Sbjct: 396 MISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGN 455
Query: 489 RRKVNQV 495
+ +
Sbjct: 456 AAGIESI 462
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 132/313 (42%), Gaps = 13/313 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N +L G+ D + +K + S TYNTLIS +GR + + E
Sbjct: 337 TWNTMLAVCGKRGMEDYVTRVLNGMKS-CGVELSRDTYNTLISAYGRCGSRTYAFKMYDE 395
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ S +P + TYN L+ W + I M P+ +Y LLL+ YA GN
Sbjct: 396 MISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGN 455
Query: 312 LPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+E I K G FP ++R ++ A KC R++ +E + + + Y+P
Sbjct: 456 AAGIESIE---KEVYVGTIFPSWVILRTLVIANFKCR---RLEGVEKAFQEVKAQGYKPD 509
Query: 369 LNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L + ++ +YAK + L + D+ + + ++ Y + N + +
Sbjct: 510 LVIFNSMLAMYAK-NGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKIL 568
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
K+ +S+ + Y++ + + Q ++E + +L EM + T+ + YA+
Sbjct: 569 KQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASL 628
Query: 487 GQRRKVNQVLGLM 499
+ +V+ M
Sbjct: 629 EMFNEAREVVNYM 641
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N++L Y NGL K +F D K++ +SP ++TYN+L+ ++ + E +++
Sbjct: 513 FNSMLAMYAKNGLYSKATEMF-DSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQL 571
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
K S + P+V +YN +I G+ + + + I M A + P TY L+ GYA
Sbjct: 572 KSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMF 631
Query: 313 PRMEKIYELVKHH 325
++ + HH
Sbjct: 632 NEAREVVNYMIHH 644
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 13/148 (8%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218
Y+K + I L+ DL TYN+L+ Y + S + + + + LK
Sbjct: 526 YSKATEMFDSIKQSGLSPDLI------------TYNSLMDMYAKSNESWEAEKILKQLKS 573
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
+ + P +V+YNT+I+ F + L+ + E+ ++P V TY+ L+ GY + M+
Sbjct: 574 -SQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFN 632
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
+ E+ M + P TY ++ Y
Sbjct: 633 EAREVVNYMIHHNLKPMELTYRRVVDSY 660
>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
Length = 472
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 107/265 (40%), Gaps = 39/265 (14%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
G+ D + AE + YN ++ + G +K LF+++ + I P +
Sbjct: 162 GKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRG-IPPDL 220
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTYN+++ + +D EA +++ + + PN +TYN LI GY + W + +++
Sbjct: 221 VTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 280
Query: 287 MKAGPVMPDTNT-----------------------------------YLLLLRGYAHSGN 311
M+ ++PD T Y ++L GYA G
Sbjct: 281 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 340
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR---LIPEKEYRPW 368
L M +++L+ +F I AY+ C + D+ I MR + P+
Sbjct: 341 LVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 400
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDA 393
+ L R+ +D +E+ + I+
Sbjct: 401 VIAALCRIGKMDDAMEKFNQMIDQG 425
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 71/159 (44%), Gaps = 8/159 (5%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A D+F A K + +YN +L Y G LF DL I+P T+N I
Sbjct: 309 ARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLF-DLMLGDGIAPDFYTFNVQI 367
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM-TAWMWGKVEEIYQMMKAGPV 292
+ ++D F E++D + P+V TY +IA M +E+ QM+ G V
Sbjct: 368 KAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQG-V 426
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKI----YELVKHHVD 327
PD Y L++G+ G L + + I E++ H+D
Sbjct: 427 APDKYAYNCLIQGFCTHGILLKTQGIDFGNNEIMALHLD 465
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 98/250 (39%), Gaps = 10/250 (4%)
Query: 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM--PDTNTYLLLLRGYAHSGNLPRME 316
P+VF+YN L+ G+ + + +MM G + PD Y ++ G+ G++ +
Sbjct: 146 PDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKAC 205
Query: 317 KIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLL 373
++ E+V+ + + +++ A K D K EA +R + K P W L
Sbjct: 206 DLFKEMVQRGIP-PDLVTYNSVVHALCKARAMD---KAEAFLRQMVNKRVLPNNWTYNNL 261
Query: 374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
I Y+ +E + + H + V + ++ S + + + + G
Sbjct: 262 IYGYSSTGQWKEAVRVFKEMRRHSI-LPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 320
Query: 434 WRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVN 493
Y+ + YA++ + +M + M I TF + AYA CG K
Sbjct: 321 QNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAM 380
Query: 494 QVLGLMCKNG 503
+ M +G
Sbjct: 381 IIFNEMRDHG 390
>gi|159464329|ref|XP_001690394.1| hypothetical protein CHLREDRAFT_114572 [Chlamydomonas reinhardtii]
gi|158279894|gb|EDP05653.1| predicted protein [Chlamydomonas reinhardtii]
Length = 287
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 4/143 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY AL+ AY G +K +FRD+ + +++TY++LIS + + F +
Sbjct: 142 TYTALISAYGKKGQVEKALDIFRDMIRRG-CERNVITYSSLISACEKAGRWEMALELFSK 200
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ N PNV TYN LIA W K E+++ M+ PD+ TY L+ Y G
Sbjct: 201 MHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQ 260
Query: 312 LPRMEKIYELVKH---HVDGKEF 331
R K +E ++ H D F
Sbjct: 261 WRRALKAFEQMQSQGCHPDAAVF 283
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 5/173 (2%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTI 190
+P AL+V + G + YT I G+ V+ A D+F + + + +
Sbjct: 119 GQPEQALKVYE---KMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNV 175
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TY++L+ A G + LF + KE N P++VTYN+LI+ + F+
Sbjct: 176 ITYSSLISACEKAGRWEMALELFSKMHKE-NCKPNVVTYNSLIAACSHGGHWEKASELFE 234
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
+++ P+ TY LI Y W + + ++ M++ PD + L+
Sbjct: 235 QMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCHPDAAVFNSLM 287
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 2/162 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I G + A +L AE ++ + + TY+AL+ + D Q +++ +
Sbjct: 3 YTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQML 62
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+E SP++VTYN LI V + S + V TYN +I+ +
Sbjct: 63 EEG-CSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQP 121
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ ++Y+ M A V P TY L+ Y G + + I+
Sbjct: 122 EQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIF 163
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 93/241 (38%), Gaps = 42/241 (17%)
Query: 121 YAFVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADL 178
Y + ++ Q GS +L ALE++ R + G Y+ + + N +DLA D+
Sbjct: 1 YTYTTMISQCGSHQQLRRALELVAEMRSR---GIDCNVHTYSALMNVCIKANELDLAQDV 57
Query: 179 FAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT------ 231
+ + + + TYN L+ + + + L L + + I + TYNT
Sbjct: 58 YKQMLEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVR-SGIQAEVRTYNTVISACN 116
Query: 232 -----------------------------LISVFGRLLLVDHMEAAFQEIKDSNLSPNVF 262
LIS +G+ V+ F+++ NV
Sbjct: 117 KSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVI 176
Query: 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
TY+ LI+ A W E++ M P+ TY L+ +H G+ + +++E +
Sbjct: 177 TYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQM 236
Query: 323 K 323
+
Sbjct: 237 Q 237
>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
Length = 755
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 39/240 (16%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YN ++ + G +K +LF ++ + I P++VTY T+I + +VD + FQ+
Sbjct: 163 AYNTVINGFFREGQVEKAYNLFLEMMDQG-IPPNVVTYTTVIDGLCKAQVVDRAKGVFQQ 221
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL---------- 301
+ D + P+ TYN LI GY++ W +V ++ + M + PD TY L
Sbjct: 222 MIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGR 281
Query: 302 -------------------------LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336
LL GYA G L M +L+ + +
Sbjct: 282 CREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNI 341
Query: 337 MICAYSKCSVTDRIKKIEALMR---LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA 393
M CAY+K ++ + I MR L P+ L L ++ +D + + + IN+
Sbjct: 342 MFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEG 401
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 114/283 (40%), Gaps = 12/283 (4%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E P +V YNT+I+ F R V+ F E+ D + PNV TY +I G A +
Sbjct: 154 EFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVD 213
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV---DGKEFPLIR 335
+ + ++Q M V PD TY L+ GY +G + ++ E + H D + L+
Sbjct: 214 RAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLL 273
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDA 393
+C +C ++ + K +P + + +L+ YA + L EM ++
Sbjct: 274 DYLCKNGRC------REARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLM 327
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
+ S RI + +Y + +++ + + G + + + R
Sbjct: 328 VGNGVSPNR-RIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGR 386
Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
V++ +M N + + F + Y T G+ K ++
Sbjct: 387 VDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELF 429
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 86/189 (45%), Gaps = 6/189 (3%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N + AY + ++ +F ++++ +SP +V++ LI +L VD F ++
Sbjct: 339 FNIMFCAYAKKAMIEEAMHIFNKMRQQG-LSPDVVSFGALIDALCKLGRVDDAVLQFNQM 397
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ ++PN+F ++ L+ G T W K EE++ + + D + L+ + G +
Sbjct: 398 INEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRV 457
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLN 370
+++ +L+ G +I C +T RI + L+ ++ +P +
Sbjct: 458 MEAQRLIDLMIRV--GVRPNVISYNTLVAGHC-LTGRIDEAAKLLDVMVSNGLKPNEFTY 514
Query: 371 VLLIRVYAK 379
+L+R Y K
Sbjct: 515 TILLRGYCK 523
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 130/318 (40%), Gaps = 19/318 (5%)
Query: 206 SDKCQSLFRDLKKEAN--ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
S++ SLF + +E + ++P+ TY+ LI F R+ ++H AAF I + NV
Sbjct: 68 SERVVSLFTRMARECSSKVAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIV 127
Query: 264 YNYLIAGYMTAWMWGKVEEIYQM-MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
+ L+ G A + +I + M PD Y ++ G+ G ++EK Y L
Sbjct: 128 ISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREG---QVEKAYNLF 184
Query: 323 KHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVY 377
+D P + +I K V DR K + + + ++ +P LI Y
Sbjct: 185 LEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGV---FQQMIDRGVKPDNGTYNCLIHGY 241
Query: 378 AKEDCLEEMEKSINDAFEH--KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR 435
+E+ + + + H + T ++ + RC + + R G +
Sbjct: 242 LSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFR---KGIK 298
Query: 436 LCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQV 495
++Y + YA++ + EM S L M + +++ F IM+ AYA + +
Sbjct: 299 PDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHI 358
Query: 496 LGLMCKNGYDVPVNAFPS 513
M + G V +F +
Sbjct: 359 FNKMRQQGLSPDVVSFGA 376
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 81/211 (38%), Gaps = 30/211 (14%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR 168
+G C RR + Y+ M G P +A T G+ GR
Sbjct: 519 RGYCKARRVDDAYSLFREMLMKGVTPVVA-----------------TYNTILHGLFQTGR 561
Query: 169 INNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDL-KKEANISPSI 226
+ A +L+ N K I TYN +L N D+ +FR L K+ +
Sbjct: 562 FSE---ANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDS-- 616
Query: 227 VTYNTLISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
VT+N +I G LL E A F I L P+V TY + + G+ + +
Sbjct: 617 VTFNIMI---GALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGL 673
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ M+ P+++ L+R H G++ R
Sbjct: 674 FSAMEKSGTAPNSHMLNALVRRLLHRGDISR 704
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN L+ + G D+ L D+ + P+ TY L+ + + VD + F+E
Sbjct: 478 SYNTLVAGHCLTGRIDEAAKLL-DVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFRE 536
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ ++P V TYN ++ G + + E+Y M D TY ++L G
Sbjct: 537 MLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNG 590
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 45/232 (19%), Positives = 90/232 (38%), Gaps = 17/232 (7%)
Query: 123 FVELMKQLGSRPRL-------ALEVLNWRRRQAG------YGTPMTKEEYTKGIKFAG-- 167
++LM ++G RP + A L R +A + E+T I G
Sbjct: 463 LIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYC 522
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+ VD A LF E K + + TYN +L G + L+ ++ + I
Sbjct: 523 KARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMIN-SRTKCDI 581
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TYN +++ + VD F+ + + + T+N +I + +++
Sbjct: 582 YTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFAT 641
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338
+ A ++PD TY L+ G+L + ++ ++ ++ A++
Sbjct: 642 ISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALV 693
>gi|302755642|ref|XP_002961245.1| hypothetical protein SELMODRAFT_70140 [Selaginella moellendorffii]
gi|300172184|gb|EFJ38784.1| hypothetical protein SELMODRAFT_70140 [Selaginella moellendorffii]
Length = 489
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 87/203 (42%), Gaps = 11/203 (5%)
Query: 121 YAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEE---YTKGIKFAGRINNVDLAAD 177
Y E++K++ R+ALE W + P K + Y+ I+ G N
Sbjct: 1 YQVCEVLKRVRDW-RVALEFFTWAK-----SVPFFKHDAMNYSMMIRVLGTCGNYTQGRK 54
Query: 178 LFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
LF E K LK + T N ++ Y D LFR+ + P + TY LI +
Sbjct: 55 LFDEMREKGLKPDLVTVNNMIKCYGSANRMDDAMDLFREFP-DFGFEPDVCTYALLIDLL 113
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
G+ V + F E++ L P+ + +N +IA + G +E MK + P T
Sbjct: 114 GKAGRVSEVRKLFLELQSRKLKPDEYVFNSMIANFSKWKDLGLADEALDYMKVCGIRPST 173
Query: 297 NTYLLLLRGYAHSGNLPRMEKIY 319
TY ++L YA S N EKIY
Sbjct: 174 VTYAIVLNMYAKSLNFMLAEKIY 196
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 9/222 (4%)
Query: 126 LMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK 185
++K GS R+ + ++ R +G Y I G+ V LF E ++
Sbjct: 74 MIKCYGSANRMD-DAMDLFREFPDFGFEPDVCTYALLIDLLGKAGRVSEVRKLFLELQSR 132
Query: 186 HLKTIG-TYNALLGAYMYN---GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241
LK +N+++ + GL+D+ D K I PS VTY +++++ + L
Sbjct: 133 KLKPDEYVFNSMIANFSKWKDLGLADEAL----DYMKVCGIRPSTVTYAIVLNMYAKSLN 188
Query: 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301
E + E +SNL P+++ YN I + A + E + ++ ++PD +Y
Sbjct: 189 FMLAEKIYCEYLNSNLPPDLYVYNNAILFFGLAGRCREAEWAVEDIEKAGLVPDKFSYCT 248
Query: 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
++ +A G P +K ++ + + A+I AY K
Sbjct: 249 IISAWARQGCAPDAKKWFDKARSRGITPSPEMCNALIDAYIK 290
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 60/311 (19%), Positives = 122/311 (39%), Gaps = 33/311 (10%)
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
D +E + P +VT N +I +G +D F+E D P+V TY LI A
Sbjct: 57 DEMREKGLKPDLVTVNNMIKCYGSANRMDDAMDLFREFPDFGFEPDVCTYALLIDLLGKA 116
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
+V +++ +++ + PD + ++ ++ +L ++ + +K
Sbjct: 117 GRVSEVRKLFLELQSRKLKPDEYVFNSMIANFSKWKDLGLADEALDYMK----------- 165
Query: 335 RAMICAYSKCSVTDRI---KKIEALMRLIPEKEYRPWLNVLL----------IRVYAKED 381
+C +VT I ++L ++ EK Y +LN L I +
Sbjct: 166 ---VCGIRPSTVTYAIVLNMYAKSLNFMLAEKIYCEYLNSNLPPDLYVYNNAILFFGLAG 222
Query: 382 CLEEMEKSINDAFEHKTSVTTVRIMRC-IVSSYFRCNAVDKLANFVKRAESAGWRLCRSL 440
E E ++ D K + + C I+S++ R + +A S G +
Sbjct: 223 RCREAEWAVEDI--EKAGLVPDKFSYCTIISAWARQGCAPDAKKWFDKARSRGITPSPEM 280
Query: 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
++ + Y +E + +L M + + + +T+ ++ Y C + V+ + M
Sbjct: 281 CNALIDAYIKALDLEPVAGILDAMPGWGVKATLQTYTYLFNYYCECC-KEYVDLLRDYMR 339
Query: 501 KNGYDVPVNAF 511
K G+ P + F
Sbjct: 340 KTGH--PADKF 348
>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
Length = 821
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 127/307 (41%), Gaps = 9/307 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T + ++ A GL D+ + F LK E ++ + TYN+L+ VFG+ + + +E
Sbjct: 282 TCSTVISACGREGLLDEARKFFARLKSEGYVAGTF-TYNSLLQVFGKAGIYSEALSILKE 340
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ +N P++ TYN L+A Y+ A + + M +MP+ TY ++ Y +G
Sbjct: 341 MEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGK 400
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ + +K A++ K S + + + MR N
Sbjct: 401 EDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNT 460
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVT---TVRIMRCIVSSYFRCNAVDKLANFVKR 428
+L K M K +N F S ++ +Y RC + + +
Sbjct: 461 MLAMCGNK-----GMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEE 515
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
AG+ C + Y++ + A + E ESV+ +M++ ++ ++ +M YA G
Sbjct: 516 MIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGN 575
Query: 489 RRKVNQV 495
R + ++
Sbjct: 576 GRGIEKI 582
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/314 (20%), Positives = 139/314 (44%), Gaps = 7/314 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ AY G DK S FR +K E+ P++ TYN ++ + G+ ++ M +
Sbjct: 387 TYTTVINAYGKAGKEDKALSFFRQMK-ESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCD 445
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + +PN T+N ++A M V +++ MK+ P+ +T+ L+ Y G+
Sbjct: 446 MRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGS 505
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN- 370
+ K+YE + P + + + + E+++ + K ++P
Sbjct: 506 QIDVVKMYE---EMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETS 562
Query: 371 -VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
L++ YAK +EK I + + + ++R +V + F+ A+ + +
Sbjct: 563 YSLMLNCYAKGGNGRGIEK-IEEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEF 621
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
G++ L++S + ++A + + +L+ + + T+ + YA G+
Sbjct: 622 CKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGEC 681
Query: 490 RKVNQVLGLMCKNG 503
K ++L + K+G
Sbjct: 682 WKGEEILKGIQKSG 695
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ Y G K + + + ++K P +V+YNT+I F R L+ E
Sbjct: 667 TYNSLMDMYARGGECWKGEEILKGIQKSGG-KPDLVSYNTVIKGFCRQGLMQEAIRTLSE 725
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
+ S + P + TYN +AGY M+ +VEE+ M P+ TY +++ GY
Sbjct: 726 MTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGY 780
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 74/335 (22%), Positives = 132/335 (39%), Gaps = 54/335 (16%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N +L G+ +FR++K P+ T+N LI +GR + ++E
Sbjct: 457 TWNTMLAMCGNKGMHKYVNRVFREMKS-CGFEPNRDTFNALIGAYGRCGSQIDVVKMYEE 515
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + +P V TYN L+ W E + MK+ P+ +Y L+L YA GN
Sbjct: 516 MIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGN 575
Query: 312 LPRMEKIYELVKHHVDGKEFP--------------------------------------L 333
+EKI E + +G FP L
Sbjct: 576 GRGIEKIEEEI---YNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVL 632
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKE-DCL--EEMEK 388
+M+ ++K + DR + ++RLI E +P L L+ +YA+ +C EE+ K
Sbjct: 633 FNSMLSIFAKNKMYDRAHE---MLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILK 689
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
I + V+ +++ A+ L+ +G R C Y++ + Y
Sbjct: 690 GIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMT----ISGIRPCIVTYNTFVAGY 745
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
+ + E+E V+ M + ++ T+ I+ Y
Sbjct: 746 SGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGY 780
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 27/187 (14%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P +V +N+++S+F + + D + I++S L P++ TYN L+ Y K EEI
Sbjct: 628 PDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEI 687
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+ ++ PD +Y +++G+ G + E I L + + G IR I Y+
Sbjct: 688 LKGIQKSGGKPDLVSYNTVIKGFCRQGLM--QEAIRTLSEMTISG-----IRPCIVTYNT 740
Query: 344 C----SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC--------------LEE 385
S ++E ++ + + + RP N L ++ C + E
Sbjct: 741 FVAGYSGKGMFSEVEEVISYMIQHDCRP--NELTYKIVVDGYCKGKKYKEAMDFVSNITE 798
Query: 386 MEKSIND 392
M+KS +D
Sbjct: 799 MDKSFDD 805
>gi|296090624|emb|CBI41008.3| unnamed protein product [Vitis vinifera]
Length = 379
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
I G+ D A +F E ++ +++ ++NALLGA +++ DK F++L
Sbjct: 109 ISLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKFDKIDGFFQELPGNLG 168
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
+ P +V+YN +++ F + +D + E++ L P++ T+N L+ + + E
Sbjct: 169 VVPDVVSYNIIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGE 228
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
+I+ +MK V P+ +Y LRG RM + EL+
Sbjct: 229 KIWDLMKKNNVAPNVRSYNAKLRGVISEN---RMSEAVELI 266
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT-LISVFGRLLLVDHMEAAFQ 250
T+N LL A+ NG + ++ DL K+ N++P++ +YN L V + + +E
Sbjct: 210 TFNTLLNAFYQNGSYADGEKIW-DLMKKNNVAPNVRSYNAKLRGVISENRMSEAVEL-ID 267
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+K S + P+VFT N L+ G+ A + + Y + + P TY+ L+ G
Sbjct: 268 EMKTSGIKPDVFTLNSLMKGFCNAGNLEEAKRWYSEIARNELPPVRATYMTLIPFLVEKG 327
Query: 311 NL 312
+
Sbjct: 328 DF 329
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ Y +G+ D +F ++ + S++++N L+ D ++ FQE+ +
Sbjct: 108 LISLYGKSGMFDHAFKVFDEMPDQ-KCERSVLSFNALLGACVHSKKFDKIDGFFQELPGN 166
Query: 256 -NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ P+V +YN ++ + + M+ + PD T+ LL + +G+
Sbjct: 167 LGVVPDVVSYNIIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYAD 226
Query: 315 MEKIYELVKHH 325
EKI++L+K +
Sbjct: 227 GEKIWDLMKKN 237
>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/360 (22%), Positives = 148/360 (41%), Gaps = 22/360 (6%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
+K G+ V+ A +F + + K T TYN+++ M G +K L+ ++ E +
Sbjct: 166 VKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGD 225
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
P VTY+ LI+ FG+L D + F E+K++ L P Y ++ Y + G+VE
Sbjct: 226 CLPDTVTYSALIAAFGKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIY---FKLGRVE 282
Query: 282 E---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338
+ + Q MK TY L++G +G + I+ + + LI +I
Sbjct: 283 KALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLI 342
Query: 339 CAYSKCS-VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAF--- 394
K + D IK E + L + P NV+ K L E + ++AF
Sbjct: 343 NLLGKAGRLADAIKLFEEMESL----QCTP--NVVTYNTVIK--ALFESKARASEAFLWY 394
Query: 395 ---EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451
+ V + ++ + + N V+K ++ + G+ C + Y S +
Sbjct: 395 EKMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKA 454
Query: 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
+R E + +E+ S + + +M CG+ + + M K G + V A+
Sbjct: 455 KRYEAANELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAY 514
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 17/190 (8%)
Query: 122 AFVELMKQLGSRPR--LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF 179
A+ L+ LG R A E+ R GY + Y IK G+ + A DLF
Sbjct: 443 AYCSLINALGKAKRYEAANELFQELRENCGYSSARV---YAVMIKHLGKCGRLSEAVDLF 499
Query: 180 AEAANKHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
E +K +G YNAL+ + G++D+ SL R ++ E +P + ++N ++
Sbjct: 500 NE-----MKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTME-ENGCTPDLNSHNIIL 553
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F R F +K+S + P+V +YN ++ A M+ + ++ + M +
Sbjct: 554 NGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFE 613
Query: 294 PDTNTYLLLL 303
D TY +L
Sbjct: 614 YDLITYSSIL 623
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 4/221 (1%)
Query: 92 LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYG 151
LL L ++ +E S + N + ++K L A E W + G
Sbjct: 344 LLGKAGRLADAIKLFEEMES--LQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENG 401
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNGLSDKCQ 210
+ Y+ I + N V+ A L E K Y +L+ A +
Sbjct: 402 VVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAAN 461
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
LF++L++ S + V Y +I G+ + F E+K +P+V+ YN L++G
Sbjct: 462 ELFQELRENCGYSSARV-YAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSG 520
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ M + + + M+ PD N++ ++L G+A +G
Sbjct: 521 MVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTGG 561
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAG 290
++ V G+ +V+ + F +IK P TYN +I M KV E+Y +M G
Sbjct: 165 IVKVLGKAKMVNKALSIFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEG 224
Query: 291 PVMPDTNTYLLLLRGYAHSG 310
+PDT TY L+ + G
Sbjct: 225 DCLPDTVTYSALIAAFGKLG 244
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 81/209 (38%), Gaps = 4/209 (1%)
Query: 163 IKFAGRINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
I G+ + A LF E + + + TYN ++ A + L+ + KE
Sbjct: 342 INLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENG 401
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
+ PS TY+ LI F + V+ +E+ + +P Y LI A +
Sbjct: 402 VVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAAN 461
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAY 341
E++Q ++ Y ++++ G L ++ +K + A++
Sbjct: 462 ELFQELRENCGYSSARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGM 521
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+ +TD + +L+R + E P LN
Sbjct: 522 VRVGMTD---EAHSLLRTMEENGCTPDLN 547
>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
Length = 642
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 87/397 (21%), Positives = 167/397 (42%), Gaps = 29/397 (7%)
Query: 113 LFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV 172
L + N +FV ++ +P +A W R+Q Y + E Y + +V
Sbjct: 93 LIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNL--ECYVSLVDVLALAKDV 150
Query: 173 DLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
D + +E T+ NAL+ ++ G+ ++ ++R + KE I P++ TYN
Sbjct: 151 DRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKM-KENGIEPTLYTYNF 209
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L++ + VD E F+ ++ + P++ TYN +I GY A K E + M+
Sbjct: 210 LMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRG 269
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH---HVDGKEFPLIRAMICAYSKCSVTD 348
D TY+ +++ + +Y+ + V F L+ +C K + +
Sbjct: 270 HEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGK--LNE 327
Query: 349 RIKKIEALMRLIPEKEYRPWLNV--LLIRVYAK----EDCLEEMEKSINDAFEHKTSVTT 402
E ++R K +P + + +LI YAK ED + + + I++ F K V T
Sbjct: 328 GYTVFENMIR----KGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGF--KPDVVT 381
Query: 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
+ +V+ + V++ ++ G + Y S + RV+E E + +
Sbjct: 382 YSV---VVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFE 438
Query: 463 EMENYKIDCSKKTFWIMYYAYATC-GQRRKVNQVLGL 498
EM C++ ++ Y A + RKV++ + L
Sbjct: 439 EMSEK--GCTRDSY--CYNALIDAFTKHRKVDEAIAL 471
Score = 38.5 bits (88), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 81/198 (40%), Gaps = 23/198 (11%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C + + GY E M + GS+P +A+ YT I +
Sbjct: 318 GLCKEGKLNEGYTVFENMIRKGSKPNVAI--------------------YTVLIDGYAKS 357
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+V+ A L ++ K + TY+ ++ NG ++ F + + ++ + +
Sbjct: 358 GSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDG-LAINSMF 416
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y++LI G+ VD E F+E+ + + + + YN LI + + +++ M+
Sbjct: 417 YSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRME 476
Query: 289 AGPVMPDT-NTYLLLLRG 305
T TY +LL G
Sbjct: 477 EEEGCDQTVYTYTILLSG 494
>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
Length = 628
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 103/249 (41%), Gaps = 15/249 (6%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N L+ + G + L ++K + P +VTYNTLI + + + QE+
Sbjct: 368 FNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEM 427
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ PNV TY LI GY M+ + E ++ M A PD TY +L ++ +G +
Sbjct: 428 QAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMM 487
Query: 313 PRMEKIYELVKHHVD--GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW-- 368
+ E +Y+ +K+ + R +I Y R + E + L+ E R W
Sbjct: 488 SKAEGVYQQLKNKTSYCSPDAITYRILIDGYC------RAEDTEQGLTLLQEMTARGWSC 541
Query: 369 ----LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
NVL+ ++ E+ + ++ + V + I +V + R V+ +
Sbjct: 542 DSYTYNVLIAKLAETEE-VPSKALAVYQQMLDQDCVPSASIFNSLVRLFLRTGDVNSARS 600
Query: 425 FVKRAESAG 433
V+ G
Sbjct: 601 MVQEMNEKG 609
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E+ P +VTYNT IS + +D +E+ + P+V T+ +I+G A
Sbjct: 180 ESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRID 239
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
++++ M +PD+ TY ++L + + L ++++ E
Sbjct: 240 DAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLE 281
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM-WGKVEEI 283
S+VTY TLI + +D +A Q++ D+ +PNV TY LI G A ++ +
Sbjct: 9 SVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTV 68
Query: 284 YQMMKAGPVMPDTNTYLLLLRG 305
+M+++G PD TY L+ G
Sbjct: 69 KRMLRSG-CEPDLVTYNSLIHG 89
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 5/130 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN + G DK + ++ + I P +VT+ ++IS + +D F+
Sbjct: 189 TYNTFISGLCKAGKLDKGLEMLEEMDR-GGIPPDVVTFCSIISGLCKANRIDDAFQVFKG 247
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY---QMMKAGPVMPDTNTYLLLLRGYAH 308
+ + P+ TY+ ++ A V+E+ Q MKAG VM + T+ +
Sbjct: 248 MLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVM-EVYTHNAFIGALCR 306
Query: 309 SGNLPRMEKI 318
SG P + I
Sbjct: 307 SGKFPLAKNI 316
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 7/125 (5%)
Query: 182 AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241
AAN + ++ TY L+ +G D Q+L + + +A +P++VTY LI L
Sbjct: 2 AANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKM-ADAGCAPNVVTYTALID---GLCK 57
Query: 242 VDHMEAAFQEIK---DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298
A Q +K S P++ TYN LI G A + Q + P+ T
Sbjct: 58 ARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHIT 117
Query: 299 YLLLL 303
Y L+
Sbjct: 118 YSTLV 122
>gi|15231160|ref|NP_187922.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75311241|sp|Q9LK58.1|PP225_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13150
gi|10172602|dbj|BAB01406.1| unnamed protein product [Arabidopsis thaliana]
gi|66792658|gb|AAY56431.1| At3g13150 [Arabidopsis thaliana]
gi|332641781|gb|AEE75302.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 551
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 118/245 (48%), Gaps = 6/245 (2%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+T+ ++NALL AY+ + D+ F++L ++ I+P +VTYNT+I R +D + +
Sbjct: 155 RTVKSFNALLSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILS 214
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
F+E++ + P++ ++N L+ + ++ + + I+ +MK+ + P+ +Y +RG
Sbjct: 215 IFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLT 274
Query: 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
+ + +++K + A+I AY V + ++++ + EK P
Sbjct: 275 RNKKFTDALNLIDVMKTEGISPDVHTYNALITAY---RVDNNLEEVMKCYNEMKEKGLTP 331
Query: 368 --WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
+LI + K+ L+ + +A +HK ++ + + +V +D+
Sbjct: 332 DTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKL-LSRPNMYKPVVERLMGAGKIDEATQL 390
Query: 426 VKRAE 430
VK +
Sbjct: 391 VKNGK 395
>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
Length = 579
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 3/205 (1%)
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
AFV +++ L + + LE ++ G Y G++ V ++LF +
Sbjct: 337 AFVSMLEVLCNAEK-TLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDK 395
Query: 182 -AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
N + + TYN ++ +Y GL DK LF ++ + ++ P +VTYN+LI+ G+
Sbjct: 396 MKTNGIIPDVFTYNIMISSYGRVGLVDKASELF-EVMEASSCKPDVVTYNSLINCLGKHG 454
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
+D F+E+++ P+VFTY+ LI + + ++ M + P+ TY
Sbjct: 455 DLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYN 514
Query: 301 LLLRGYAHSGNLPRMEKIYELVKHH 325
+LL G K+YE +K
Sbjct: 515 ILLDCLERRGKTEEAHKLYETMKQQ 539
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I GR+ VD A++LF K + TYN+L+ +G D+ LF++++
Sbjct: 408 YNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQ 467
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E P + TY+ LI FG+ V+ + F E+ +PN+ TYN L+
Sbjct: 468 -EKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLD---CLERR 523
Query: 278 GKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
GK EE +Y+ MK ++PD+ TY +L R + S R+ K
Sbjct: 524 GKTEEAHKLYETMKQQGLIPDSITYSILERLESRSQRTVRIRK 566
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 122/287 (42%), Gaps = 33/287 (11%)
Query: 51 CAPATHTVFPTLVRL------LSETLTYPDARVRKDLTQTVSALRD--ELLANVDDLDKV 102
C P +T + L+R+ S+ L++ D V K + A E L +DKV
Sbjct: 194 CVPDAYT-YTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKV 252
Query: 103 FRVLDE--KGSCLFRRHSNGYAF---VELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKE 157
VL + + C N + + ++++ G RL EVL+ R M +
Sbjct: 253 IFVLSKMVENDC----QPNQFTYSITLDILATEGQLHRLN-EVLDICSRF------MNRS 301
Query: 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL----F 213
Y+ +K + + A ++F N H K G +A + M L + ++L
Sbjct: 302 IYSYLVKSLCKSGHASEAHNVFCRMWNSHEK--GDRDAFVS--MLEVLCNAEKTLEAIDL 357
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+ E I + YN + S G+L V + F ++K + + P+VFTYN +I+ Y
Sbjct: 358 LHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGR 417
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ K E++++M+A PD TY L+ G+L +++
Sbjct: 418 VGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFK 464
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 77/393 (19%), Positives = 144/393 (36%), Gaps = 54/393 (13%)
Query: 143 WRRRQAGYG------TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL 196
W R +GY + E +KG + + D+FA YN L
Sbjct: 122 WGLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFA------------YNML 169
Query: 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256
L A G+ D+ +F D+K++ + P TY LI + G+ + F E+
Sbjct: 170 LDALAKAGMVDQAFQVFEDMKQKHCV-PDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKG 228
Query: 257 LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
N+ +N +I M KV + M P+ TY + L A G L R+
Sbjct: 229 CVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLN 288
Query: 317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI-------------------------- 350
++ ++ ++ + + +C S +
Sbjct: 289 EVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNA 348
Query: 351 -KKIEA--LMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME--KSINDAFEHKTSVTTVRI 405
K +EA L+ ++PEK + + + V++ L+++ ++ D + + V
Sbjct: 349 EKTLEAIDLLHMMPEKGIVTDVGMYNM-VFSALGKLKQVSFISNLFDKMKTNGIIPDVFT 407
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
++SSY R VDK + + E++ + Y+S + ++E + KEM+
Sbjct: 408 YNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQ 467
Query: 466 NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL 498
D T+ I+ + G+ KV L
Sbjct: 468 EKGYDPDVFTYSILIECF---GKSNKVEMACSL 497
>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
Length = 591
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 92/188 (48%), Gaps = 13/188 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ A+ +G+ D SL ++K+++ I P I TY+TLI +L +++ F E
Sbjct: 215 TYTIVIDAFCKDGMLDGATSLLNEMKQKS-IPPDIFTYSTLIDALCKLSQWENVRTLFLE 273
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ N+ PNV T+N +I G EEI + M V PD TY +++ GY G
Sbjct: 274 MIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQ 333
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM---RLIPEKEYRPW 368
+ R +I++ + + + +I Y+ R KKI+ M R I +K +P
Sbjct: 334 VDRAREIFDSMINKSIEPDIISYNILINGYA------RQKKIDEAMQVCREISQKGLKPS 387
Query: 369 L---NVLL 373
+ NVLL
Sbjct: 388 IVTCNVLL 395
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 175 AADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A + F E + H+ + T+ LLG Y NGL ++ S F L++ +I Y +I
Sbjct: 407 AQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRRE-DTNIQIYTAVI 465
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ +D A F+++ L P+V TY +I+GY + + +++ + M+ +
Sbjct: 466 DGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCL 525
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338
D TY +++RG+ S + M+ E + GK F A +
Sbjct: 526 ADNRTYNVIVRGFLRSNKVSEMKAFLE----EIAGKSFSFEAATV 566
>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
Length = 721
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ ++G +K LF+++K+ I+P + Y TLI F + ++ F E
Sbjct: 224 TYSKVIGYLCNASKVEKAFQLFQEMKRNG-IAPDVYVYTTLIDSFCKAGFIEQARNWFDE 282
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ +PNV TY LI Y+ + K E+Y+MM + P+ TY L+ G +G
Sbjct: 283 MERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGK 342
Query: 312 LPRMEKIYELVK 323
+ + +IY+++K
Sbjct: 343 IEKASQIYKIMK 354
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y+AL+ G D+ Q +F + E P++ TY++LI + +D +
Sbjct: 416 VYDALIDGCCKAGKLDEAQEVFTTML-ECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSK 474
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ---MMKAGPVMPDTNTYLLLLRGYAH 308
+ +++ +PNV Y +I G GK +E Y+ MM+ P+ TY ++ G+
Sbjct: 475 MLENSCAPNVVIYTEMIDGLCKV---GKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGK 531
Query: 309 SGNLPRMEKIYELVKH 324
SG R+EK EL++
Sbjct: 532 SG---RVEKCLELLQQ 544
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 18/145 (12%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY AL+ AY+ + K ++ ++ +P+IVTY LI + ++ ++
Sbjct: 294 TYTALIHAYLKSRKVSKANEVY-EMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKI 352
Query: 252 IKDSNLS-----------------PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294
+K N+ PNVFTY L+ G A+ + ++ + M P
Sbjct: 353 MKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEP 412
Query: 295 DTNTYLLLLRGYAHSGNLPRMEKIY 319
+ Y L+ G +G L ++++
Sbjct: 413 NHVVYDALIDGCCKAGKLDEAQEVF 437
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 200 YMYNGLSDKCQSLFRD---------LKK--EANISPSIVTYNTLISVFGRLLLVDHMEAA 248
Y Y+ L D+ LF+D L K E + +P++V Y +I ++ D
Sbjct: 450 YTYSSLIDR---LFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKL 506
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+++ +PNV TY +I G+ + K E+ Q M + P+ TY +L+
Sbjct: 507 MVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCS 566
Query: 309 SGNLPRMEKIYELVKH-----HVDG 328
+G L K+ E +K HV G
Sbjct: 567 TGLLDEAHKLLEEMKQTYWPRHVAG 591
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 12/181 (6%)
Query: 94 ANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYG 151
+D+ +VF + E G N Y + L+ +L R LAL+VL+ +
Sbjct: 428 GKLDEAQEVFTTMLECG-----YDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAP 482
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQ 210
+ YT+ I ++ D A L K + TY A++ + +G +KC
Sbjct: 483 NVVI---YTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCL 539
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
L + + + +P+ VTY LI+ L+D +E+K + +V Y +I G
Sbjct: 540 ELLQQMSSKG-CAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEG 598
Query: 271 Y 271
+
Sbjct: 599 F 599
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
L+KE + P V Y +IS L + ++ S+ PNV TY L+ G +
Sbjct: 33 LEKEEFV-PDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTYRILLCGCLNKE 91
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
G+ + I MM P + L+ Y SG+
Sbjct: 92 KLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGD 127
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 79/380 (20%), Positives = 133/380 (35%), Gaps = 47/380 (12%)
Query: 37 TLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANV 96
L K +F+R LC ++R + PD T T S + L N
Sbjct: 184 VLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPD-------TSTYSKVIG-YLCNA 235
Query: 97 DDLDKVFRVLDEKGSCLFRRHS---NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTP 153
++K F++ E +R+ + Y + L+ + + NW G
Sbjct: 236 SKVEKAFQLFQE-----MKRNGIAPDVYVYTTLIDSF-CKAGFIEQARNWFDEMERDGCA 289
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL 212
YT I + V A +++ +K I TY AL+ G +K +
Sbjct: 290 PNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQI 349
Query: 213 FRDLKKE----------------ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256
++ +KKE A+ P++ TY L+ + V + +
Sbjct: 350 YKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEG 409
Query: 257 LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
PN Y+ LI G A + +E++ M P+ TY L+ L
Sbjct: 410 CEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLAL 469
Query: 317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL---- 372
K+ + + + MI K TD K LM ++ EK P NV+
Sbjct: 470 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYK---LMVMMEEKGCNP--NVVTYTA 524
Query: 373 LIRVYAK----EDCLEEMEK 388
+I + K E CLE +++
Sbjct: 525 MIDGFGKSGRVEKCLELLQQ 544
>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
Length = 579
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 3/205 (1%)
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
AFV +++ L + + LE ++ G Y G++ V ++LF +
Sbjct: 337 AFVSMLEVLCNAEK-TLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDK 395
Query: 182 -AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
N + + TYN ++ +Y GL DK LF ++ + ++ P +VTYN+LI+ G+
Sbjct: 396 MKTNGIIPDVFTYNIMISSYGRVGLVDKASELF-EVMEASSCKPDVVTYNSLINCLGKHG 454
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
+D F+E+++ P+VFTY+ LI + + ++ M + P+ TY
Sbjct: 455 DLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYN 514
Query: 301 LLLRGYAHSGNLPRMEKIYELVKHH 325
+LL G K+YE +K
Sbjct: 515 ILLDCLERRGKTEEAHKLYETMKQQ 539
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I GR+ VD A++LF K + TYN+L+ +G D+ LF++++
Sbjct: 408 YNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQ 467
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E P + TY+ LI FG+ V+ + F E+ +PN+ TYN L+
Sbjct: 468 -EKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLD---CLERR 523
Query: 278 GKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
GK EE +Y+ MK ++PD+ TY +L R + S R+ K
Sbjct: 524 GKTEEAHKLYETMKQQGLIPDSITYSILERLESRSQRTVRIRK 566
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 122/287 (42%), Gaps = 33/287 (11%)
Query: 51 CAPATHTVFPTLVRL------LSETLTYPDARVRKDLTQTVSALRD--ELLANVDDLDKV 102
C P +T + L+R+ S+ L++ D V K + A E L +DKV
Sbjct: 194 CVPDAYT-YTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEALGKNKMVDKV 252
Query: 103 FRVLDE--KGSCLFRRHSNGYAF---VELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKE 157
VL + + C N + + ++++ G RL EVL+ R M +
Sbjct: 253 IFVLSKMVENDC----QPNQFTYSITLDILATEGQLHRLN-EVLDICSRF------MNRS 301
Query: 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL----F 213
Y+ +K + + A ++F N H K G +A + M L + ++L
Sbjct: 302 IYSYLVKSLCKSGHASEAHNVFCRMWNSHEK--GDRDAFVS--MLEVLCNAEKTLEAIDL 357
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+ E I + YN + S G+L V + F ++K + + P+VFTYN +I+ Y
Sbjct: 358 LHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGR 417
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ K E++++M+A PD TY L+ G+L +++
Sbjct: 418 VGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFK 464
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 77/393 (19%), Positives = 144/393 (36%), Gaps = 54/393 (13%)
Query: 143 WRRRQAGYG------TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL 196
W R +GY + E +KG + + D+FA YN L
Sbjct: 122 WGLRLSGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFA------------YNML 169
Query: 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256
L A G+ D+ +F D+K++ + P TY LI + G+ + F E+
Sbjct: 170 LDALAKAGMVDQAFQVFEDMKQKHCV-PDAYTYTILIRMSGKAGRTSKFLSFFDEMVSKG 228
Query: 257 LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
N+ +N +I M KV + M P+ TY + L A G L R+
Sbjct: 229 CVLNLIAFNTIIEALGKNKMVDKVIFVLSKMVENDCQPNQFTYSITLDILATEGQLHRLN 288
Query: 317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI-------------------------- 350
++ ++ ++ + + +C S +
Sbjct: 289 EVLDICSRFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNA 348
Query: 351 -KKIEA--LMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME--KSINDAFEHKTSVTTVRI 405
K +EA L+ ++PEK + + + V++ L+++ ++ D + + V
Sbjct: 349 EKTLEAIDLLHMMPEKGIVTDVGMYNM-VFSALGKLKQVSFISNLFDKMKTNGIIPDVFT 407
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
++SSY R VDK + + E++ + Y+S + ++E + KEM+
Sbjct: 408 YNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQ 467
Query: 466 NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL 498
D T+ I+ + G+ KV L
Sbjct: 468 EKGYDPDVFTYSILIECF---GKSNKVEMACSL 497
>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
Length = 735
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAY-MYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
A +L+ E + + I TYN L+ Y M N LS+ L DL SP IVT+ +L
Sbjct: 317 ANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML--DLMVRNKCSPDIVTFTSL 374
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I + + VD F+ I L N TY+ L+ G+ + EE++Q M + V
Sbjct: 375 IKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV 434
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHVD 327
+PD TY +LL G +G L + +I+E L K +D
Sbjct: 435 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 470
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I R +D A LF E K +K+ + TYN+L+ G + L +D+
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 290
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
I P+++T+N L+ VF + + ++E+ +SPN+ TYN L+ GY
Sbjct: 291 SR-EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 349
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
+ + +M PD T+ L++GY
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 3/160 (1%)
Query: 161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
KG+ G+++ + D E N + TYN+++ +G + L R ++ E
Sbjct: 166 KGLFLEGKVSEAVVLVDRMVE--NGCQPDVVTYNSIVNGICRSGDTSLALDLLRKME-ER 222
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
N+ + TY+T+I R +D + F+E++ + +V TYN L+ G A W
Sbjct: 223 NVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDG 282
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ + M + ++P+ T+ +LL + G L ++Y+
Sbjct: 283 ALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYK 322
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)
Query: 168 RINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R + LA DL + +++K + TY+ ++ + +G D SLF++++ + I S+
Sbjct: 205 RSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG-IKSSV 263
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTYN+L+ + + +++ + PNV T+N L+ ++ + E+Y+
Sbjct: 264 VTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKE 323
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
M + P+ TY L+ GY L + +L+
Sbjct: 324 MITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 22/216 (10%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR 168
KG C+ +R +G +++ + + R +A +T +G +G+
Sbjct: 376 KGYCMVKRVDDG---MKVFRNISKRGLVA--------------NAVTYSILVQGFCQSGK 418
Query: 169 INNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
I LA +LF E ++ L + TY LL NG +K +F DL+K + + IV
Sbjct: 419 IK---LAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQK-SKMDLGIV 474
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
Y T+I + V+ F + + PNV TY +I+G + + + M
Sbjct: 475 MYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM 534
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+ P+ TY L+R + G+L K+ E +K
Sbjct: 535 EEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 570
>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
Length = 816
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/388 (19%), Positives = 148/388 (38%), Gaps = 50/388 (12%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
G+ D + AE + YN ++ + G +K LF+++ + I P +
Sbjct: 198 GKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRG-IPPDL 256
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW--------- 277
VTY++++ + +D EA +++ + + P+ +TYN LI GY + W
Sbjct: 257 VTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKE 316
Query: 278 -----------------------GKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
GK++E ++ M PD +Y ++L GYA G
Sbjct: 317 MRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGC 376
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP---- 367
L M +++L+ +I AY+ C + D+ I MR + +P
Sbjct: 377 LVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMR---DHGVKPHVVT 433
Query: 368 WLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
++ V+ L R+ +D +E+ + I+ V C++ + ++ K
Sbjct: 434 YMTVIAALCRIGKMDDAMEKFNQMIDQGV-----VPDKYAYHCLIQGFCTHGSLLKAKEL 488
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
+ + G RL + S + RV + +++ N + + ++ Y
Sbjct: 489 ISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCL 548
Query: 486 CGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
G+ K +V M G + V + +
Sbjct: 549 VGKMEKALRVFDAMVSAGIEPNVVGYGT 576
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YN L+ Y G +K +F D A I P++V Y TL++ + ++ +D + F+E
Sbjct: 538 VYNMLMDGYCLVGKMEKALRVF-DAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFRE 596
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAW--MWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ + P+ YN +I G A + KV + ++M ++G M + TY ++LRG
Sbjct: 597 MLQKGIKPSTILYNIIIDGLFEAGRTVPAKV-KFHEMTESGIAM-NKCTYSIVLRG 650
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 61/302 (20%), Positives = 115/302 (38%), Gaps = 57/302 (18%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +L +E N ++ I + +++ G Q++F DL + P V YN L+
Sbjct: 485 AKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIF-DLTVNVGLHPDAVVYNMLM 543
Query: 234 SVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMM 287
+ LV ME A F + + + PNV Y L+ GY G+++E +++ M
Sbjct: 544 DGY---CLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCK---IGRIDEGLSLFREM 597
Query: 288 KAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346
+ P T Y +++ G +G +P K +E+ + + A +KC+
Sbjct: 598 LQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGI-------------AMNKCTY 644
Query: 347 TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIND--AFEHKTSVTTVR 404
+ +++R K C +E + A K + T+
Sbjct: 645 S------------------------IVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLN 680
Query: 405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
M ++ F+ V++ + +G C Y + + VEE E + M
Sbjct: 681 TM---IAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSM 737
Query: 465 EN 466
+N
Sbjct: 738 QN 739
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ +L N D+ LF++L+ N+ I+T NT+I+ + V+ + F
Sbjct: 643 TYSIVLRGLFKNRCFDEAIFLFKELRA-MNVKIDIITLNTMIAGMFQTRRVEEAKDLFAS 701
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
I S L P TY+ +I + + + E+++ M+ PD+
Sbjct: 702 ISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDS 746
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 52/267 (19%), Positives = 106/267 (39%), Gaps = 32/267 (11%)
Query: 59 FPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHS 118
F +++ L + DA+ DLT V D ++ N+ ++D G CL +
Sbjct: 504 FGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNM--------LMD--GYCLVGKME 553
Query: 119 NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADL 178
+ M G P + GYGT + Y K I +D L
Sbjct: 554 KALRVFDAMVSAGIEPNVV-----------GYGTLVNG--YCK-------IGRIDEGLSL 593
Query: 179 FAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
F E K +K + YN ++ G + + F ++ E+ I+ + TY+ ++
Sbjct: 594 FREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMT-ESGIAMNKCTYSIVLRGLF 652
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN 297
+ D F+E++ N+ ++ T N +IAG + ++++ + ++P
Sbjct: 653 KNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAV 712
Query: 298 TYLLLLRGYAHSGNLPRMEKIYELVKH 324
TY +++ G + E ++ +++
Sbjct: 713 TYSIMITNLIKEGLVEEAEDMFSSMQN 739
>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 1270; Flags: Precursor
gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1440
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 141/354 (39%), Gaps = 27/354 (7%)
Query: 116 RHSNGYAFVELMKQLGSRPRL-ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDL 174
+ S V+ M+Q G P L + L R ++G TP +L
Sbjct: 240 KFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTP-------------------NL 280
Query: 175 AADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +L N L+ TYN LL A + D +F D++ P + TYN +I
Sbjct: 281 AVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAH-RCQPDLWTYNAMI 339
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
SV+GR L E F E++ P+ TYN L+ + KV+E+YQ M+
Sbjct: 340 SVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFG 399
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
D TY ++ Y G L ++Y+ +K + G+ I + S +R +
Sbjct: 400 KDEMTYNTIIHMYGKQGQLDLALQLYKDMK-GLSGRNPDAITYTVLIDS-LGKANRTVEA 457
Query: 354 EALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVS 411
ALM + + +P L LI YAK EE E + + T + ++
Sbjct: 458 AALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNL-AYSVMLD 516
Query: 412 SYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
R N K + S G +LY ++ + R ++++ +++ME
Sbjct: 517 VLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDME 570
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 93/433 (21%), Positives = 166/433 (38%), Gaps = 58/433 (13%)
Query: 79 KDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRP-RLA 137
KD + V L D++L+ + V +LD + L + Y FV +K +G + A
Sbjct: 121 KDWRERVKFLTDKILS-LKSNQFVADILDAR---LVQMTPTDYCFV--VKSVGQESWQRA 174
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALL 197
LEV W + + G+ GR N LA ++F A + YNA++
Sbjct: 175 LEVFEWLNLRHWHSPNARMVAAILGV--LGRWNQESLAVEIFTRAEPTVGDRVQVYNAMM 232
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
G Y +G K Q L D ++ P ++++NTLI+ +K L
Sbjct: 233 GVYSRSGKFSKAQELV-DAMRQRGCVPDLISFNTLINA---------------RLKSGGL 276
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
+PN+ E+ M++ + PD TY LL + NL K
Sbjct: 277 TPNLAV------------------ELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVK 318
Query: 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL------NV 371
++E ++ H + AMI Y +C + + RL E E + + N
Sbjct: 319 VFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAE------RLFMELELKGFFPDAVTYNS 372
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
LL +A+E E++ K + + I+ Y + +D K +
Sbjct: 373 LLY-AFARERNTEKV-KEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKG 430
Query: 432 AGWRLCRSLYHSKMV-MYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRR 490
R ++ ++ ++ R E +++ EM + I + +T+ + YA G+R
Sbjct: 431 LSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKRE 490
Query: 491 KVNQVLGLMCKNG 503
+ M ++G
Sbjct: 491 EAEDTFSCMLRSG 503
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/359 (20%), Positives = 153/359 (42%), Gaps = 52/359 (14%)
Query: 180 AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
AE H Y ++ AY L K +S+ +L++ +P + T+N+L+S + +
Sbjct: 742 AETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGR-TPDLKTWNSLMSAYAQC 800
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP---DT 296
+ A F + SP V + N L+ G++EE+Y +++ M
Sbjct: 801 GCYERARAIFNTMMRDGPSPTVESINILLHALCVD---GRLEELYVVVEELQDMGFKISK 857
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
++ LL+L +A +GN+ ++KIY +K L R MI K R++ E +
Sbjct: 858 SSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCK---GKRVRDAEIM 914
Query: 357 MRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSIN-------DAFE-HKTSVTTVRIM 406
+ + E ++ L + ++++Y +E+ +K++ E +T+ T+ IM
Sbjct: 915 VSEMEEANFKVELAIWNSMLKMYT---AIEDYKKTVQVYQRIKETGLEPDETTYNTLIIM 971
Query: 407 RC-----------------------------IVSSYFRCNAVDKLANFVKRAESAGWRLC 437
C ++S++ + +++ + S G +L
Sbjct: 972 YCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLD 1031
Query: 438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
RS YH+ M + + E +L+ M+N I+ + T ++ +Y++ G ++ +VL
Sbjct: 1032 RSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVL 1090
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 101/250 (40%), Gaps = 13/250 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ Y G D L++D+K + +P +TY LI G+ A E
Sbjct: 404 TYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSE 463
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ D + P + TY+ LI GY A + E+ + M PD Y ++L
Sbjct: 464 MLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNE 523
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ +Y + + L MI K + +D I+K I + E +N
Sbjct: 524 TRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKT------IRDMEELCGMNP 577
Query: 372 LLI-RVYAKEDCLE----EMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L I V K +C + +++ +I + +E + T + I+ SS A + L F+
Sbjct: 578 LEISSVLVKGECFDLAARQLKVAITNGYELEND-TLLSILGSYSSSGRHSEAFE-LLEFL 635
Query: 427 KRAESAGWRL 436
K S RL
Sbjct: 636 KEHASGSKRL 645
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 20/228 (8%)
Query: 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDL 216
E+Y K ++ RI L D TYN L+ Y + ++ L + +
Sbjct: 941 EDYKKTVQVYQRIKETGLEPDE------------TTYNTLIIMYCRDRRPEEGYLLMQQM 988
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
+ + P + TY +LIS FG+ ++ E F+E+ L + Y+ ++ +
Sbjct: 989 RN-LGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGS 1047
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH-HVDGKEFPLIR 335
K E++ QMMK + P T LL+ Y+ SGN EK+ +K V+ P
Sbjct: 1048 DSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLP-YS 1106
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEK---EYRPWLNVLLIRVYAKE 380
++I AY + D IE L+ + E ++R W + ++KE
Sbjct: 1107 SVIDAYLRSK--DYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKE 1152
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 81/200 (40%), Gaps = 24/200 (12%)
Query: 112 CLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN 171
C RR GY ++ M+ LG P+L + Y I G+
Sbjct: 973 CRDRRPEEGYLLMQQMRNLGLDPKL--------------------DTYKSLISAFGKQKC 1012
Query: 172 VDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
++ A LF E +K LK + Y+ ++ +G K + L + + K A I P++ T +
Sbjct: 1013 LEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQ-MMKNAGIEPTLATMH 1071
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK-VEEIYQMMKA 289
L+ + E +KD+ + Y+ +I Y+ + + +E + +M K
Sbjct: 1072 LLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKE 1131
Query: 290 GPVMPDTNTYLLLLRGYAHS 309
G + PD + +R + S
Sbjct: 1132 G-LEPDHRIWTCFVRAASFS 1150
>gi|168028750|ref|XP_001766890.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681869|gb|EDQ68292.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1145
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 9/140 (6%)
Query: 142 NWRRRQAGYGTPMTKEEYTKGIKFA-------GRINNVDLAADLFAEAANKHLKTIGTYN 194
NWRR YG ++ YT +F G+ N ++ A +LF A +K + I +N
Sbjct: 237 NWRRSVELYGWLNLQKWYTPSPRFLATVLSLLGKANQLEHARELFLRAESKIMSCIQVFN 296
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA-FQEIK 253
A+LGAY G Q + +L + + P IVT+NT+ S + L M +A +EI+
Sbjct: 297 AILGAYAKQGQWQAAQYIL-ELMELSGCEPDIVTFNTIASAQCKHGLHPGMASALLREIE 355
Query: 254 DSNLSPNVFTYNYLIAGYMT 273
S+L P++ TYN L+ G +T
Sbjct: 356 ASDLRPDIITYNTLLGGCIT 375
>gi|255553861|ref|XP_002517971.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542953|gb|EEF44489.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1029
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 123/290 (42%), Gaps = 8/290 (2%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN ++ AY L +K +LFR ++ P TYN+LI +F L+D E+
Sbjct: 555 YNVMIKAYGKGKLYEKAFTLFRSMRHHGTW-PDECTYNSLIQMFSGADLMDQARDLLTEM 613
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ P T++ +IA Y +YQ M V P+ Y ++ GYA GN+
Sbjct: 614 QGVGFKPQCATFSSIIACYARLGQLSDAAGVYQEMVKVGVKPNEVVYGAIINGYAEEGNV 673
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL--N 370
K + +++ + ++ ++I YSK D K++ M + E P + +
Sbjct: 674 KEALKYFHMMEEYGISANQIVLTSLIKVYSKLGCFDSAKQLYQKMMCL---EGGPDIIAS 730
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
+I +YA + E E N+ E K S V ++ Y +D+ + + +
Sbjct: 731 NSMISLYADLGMISEAELVFNNLRE-KGSADGVSYA-TMMYLYKGMGMLDEAIDVAEEMK 788
Query: 431 SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480
+G Y+ M YA+ ++ E +L EM K+ TF I++
Sbjct: 789 LSGLLRDSVSYNKVMTCYATNGQLLECGELLHEMIKKKLFPDGGTFKILF 838
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/350 (20%), Positives = 129/350 (36%), Gaps = 15/350 (4%)
Query: 160 TKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219
T+ K GRI + AE + + TYN L+ Y G +F D+ K
Sbjct: 312 TELFKIGGRIRTPKIVGSSDAEKIVRKPRLTSTYNTLIDLYGKAGRLGDAADIFSDMMK- 370
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
+ ++ +T+NT+I G + E +++D +SP+ TYN ++ Y
Sbjct: 371 SGVAMDTITFNTMIYTCGSHGHLSEAETLLNKMEDRGVSPDTRTYNIFLSLYADEGNIDA 430
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV---KHHVDGKEFPLIRA 336
+ Y+ ++ ++PDT ++ +L + E I E + VD P
Sbjct: 431 AIKCYKKIREVGLLPDTVSHRAILHELCERNMVKEAEAIIEEIEKSSKQVDEHSLP---G 487
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI---NDA 393
++ Y + DR + L + N +I YA+ E E D
Sbjct: 488 LVKMYINKGLFDRANDL--LNKCQFGGGLSAKTNAAIIDAYAENGLWAEAEAVFYRKRDL 545
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
KT + +M + +Y + +K + G Y+S + M++
Sbjct: 546 VGQKTDILEYNVM---IKAYGKGKLYEKAFTLFRSMRHHGTWPDECTYNSLIQMFSGADL 602
Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+++ +L EM+ TF + YA GQ V M K G
Sbjct: 603 MDQARDLLTEMQGVGFKPQCATFSSIIACYARLGQLSDAAGVYQEMVKVG 652
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 16/130 (12%)
Query: 172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
D+A DLFA YN + AY +G DK + F ++ E + P +VT
Sbjct: 893 ADIALDLFA------------YNVAIFAYGSSGEIDKALNTFMKMQDEG-LEPDLVTSIC 939
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG- 290
L+ +G+ +V+ ++ + ++K ++ P+ + ++ Y A E + Q ++ G
Sbjct: 940 LVYCYGKAGMVEGVKRIYSQLKYRDIKPSDSAFKAVVDAYEDANRHDLAELVNQELRLGF 999
Query: 291 --PVMPDTNT 298
P D+++
Sbjct: 1000 DSPRFSDSDS 1009
Score = 38.5 bits (88), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
+A+I+ + YN I +G +D F +++D L P++ T L+ Y A M
Sbjct: 892 KADIALDLFAYNVAIFAYGSSGEIDKALNTFMKMQDEGLEPDLVTSICLVYCYGKAGMVE 951
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
V+ IY +K + P + + ++ Y
Sbjct: 952 GVKRIYSQLKYRDIKPSDSAFKAVVDAY 979
>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
Length = 1429
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 141/354 (39%), Gaps = 27/354 (7%)
Query: 116 RHSNGYAFVELMKQLGSRPRL-ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDL 174
+ S V+ M+Q G P L + L R ++G TP +L
Sbjct: 240 KFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTP-------------------NL 280
Query: 175 AADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +L N L+ TYN LL A + D +F D++ P + TYN +I
Sbjct: 281 AVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAH-RCQPDLWTYNAMI 339
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
SV+GR L E F E++ P+ TYN L+ + KV+E+YQ M+
Sbjct: 340 SVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFG 399
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
D TY ++ Y G L ++Y+ +K + G+ I + S +R +
Sbjct: 400 KDEMTYNTIIHMYGKQGQLDLALQLYKDMK-GLSGRNPDAITYTVLIDS-LGKANRTVEA 457
Query: 354 EALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVS 411
ALM + + +P L LI YAK EE E + + T + ++
Sbjct: 458 AALMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNL-AYSVMLD 516
Query: 412 SYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
R N K + S G +LY ++ + R ++++ +++ME
Sbjct: 517 VLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTIRDME 570
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 93/433 (21%), Positives = 166/433 (38%), Gaps = 58/433 (13%)
Query: 79 KDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRP-RLA 137
KD + V L D++L+ + V +LD + L + Y FV +K +G + A
Sbjct: 121 KDWRERVKFLTDKILS-LKSNQFVADILDAR---LVQMTPTDYCFV--VKSVGQESWQRA 174
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALL 197
LEV W + + G+ GR N LA ++F A + YNA++
Sbjct: 175 LEVFEWLNLRHWHSPNARMVAAILGV--LGRWNQESLAVEIFTRAEPTVGDRVQVYNAMM 232
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
G Y +G K Q L D ++ P ++++NTLI+ +K L
Sbjct: 233 GVYSRSGKFSKAQELV-DAMRQRGCVPDLISFNTLINA---------------RLKSGGL 276
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
+PN+ E+ M++ + PD TY LL + NL K
Sbjct: 277 TPNLAV------------------ELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVK 318
Query: 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL------NV 371
++E ++ H + AMI Y +C + + RL E E + + N
Sbjct: 319 VFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAE------RLFMELELKGFFPDAVTYNS 372
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
LL +A+E E++ K + + I+ Y + +D K +
Sbjct: 373 LLY-AFARERNTEKV-KEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKG 430
Query: 432 AGWRLCRSLYHSKMV-MYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRR 490
R ++ ++ ++ R E +++ EM + I + +T+ + YA G+R
Sbjct: 431 LSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKRE 490
Query: 491 KVNQVLGLMCKNG 503
+ M ++G
Sbjct: 491 EAEDTFSCMLRSG 503
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 74/359 (20%), Positives = 153/359 (42%), Gaps = 52/359 (14%)
Query: 180 AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
AE H Y ++ AY L K +S+ +L++ +P + T+N+L+S + +
Sbjct: 742 AETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVGNLRQSGR-TPDLKTWNSLMSAYAQC 800
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP---DT 296
+ A F + SP V + N L+ G++EE+Y +++ M
Sbjct: 801 GCYERARAIFNTMMRDGPSPTVESINILLHALCVD---GRLEELYVVVEELQDMGFKISK 857
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
++ LL+L +A +GN+ ++KIY +K L R MI K R++ E +
Sbjct: 858 SSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCK---GKRVRDAEIM 914
Query: 357 MRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSIN-------DAFE-HKTSVTTVRIM 406
+ + E ++ L + ++++Y +E+ +K++ E +T+ T+ IM
Sbjct: 915 VSEMEEANFKVELAIWNSMLKMYT---AIEDYKKTVQVYQRIKETGLEPDETTYNTLIIM 971
Query: 407 RC-----------------------------IVSSYFRCNAVDKLANFVKRAESAGWRLC 437
C ++S++ + +++ + S G +L
Sbjct: 972 YCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLD 1031
Query: 438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
RS YH+ M + + E +L+ M+N I+ + T ++ +Y++ G ++ +VL
Sbjct: 1032 RSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVL 1090
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 101/250 (40%), Gaps = 13/250 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ Y G D L++D+K + +P +TY LI G+ A E
Sbjct: 404 TYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSE 463
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ D + P + TY+ LI GY A + E+ + M PD Y ++L
Sbjct: 464 MLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNE 523
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ +Y + + L MI K + +D I+K I + E +N
Sbjct: 524 TRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKT------IRDMEELCGMNP 577
Query: 372 LLI-RVYAKEDCLE----EMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L I V K +C + +++ +I + +E + T + I+ SS A + L F+
Sbjct: 578 LEISSVLVKGECFDLAARQLKVAITNGYELEND-TLLSILGSYSSSGRHSEAFE-LLEFL 635
Query: 427 KRAESAGWRL 436
K S RL
Sbjct: 636 KEHASGSKRL 645
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 20/228 (8%)
Query: 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDL 216
E+Y K ++ RI L D TYN L+ Y + ++ L + +
Sbjct: 941 EDYKKTVQVYQRIKETGLEPDE------------TTYNTLIIMYCRDRRPEEGYLLMQQM 988
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
+ + P + TY +LIS FG+ ++ E F+E+ L + Y+ ++ +
Sbjct: 989 RN-LGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGS 1047
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH-HVDGKEFPLIR 335
K E++ QMMK + P T LL+ Y+ SGN EK+ +K V+ P
Sbjct: 1048 DSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLP-YS 1106
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEK---EYRPWLNVLLIRVYAKE 380
++I AY + D IE L+ + E ++R W + ++KE
Sbjct: 1107 SVIDAYLRSK--DYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKE 1152
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 81/200 (40%), Gaps = 24/200 (12%)
Query: 112 CLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN 171
C RR GY ++ M+ LG P+L + Y I G+
Sbjct: 973 CRDRRPEEGYLLMQQMRNLGLDPKL--------------------DTYKSLISAFGKQKC 1012
Query: 172 VDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
++ A LF E +K LK + Y+ ++ +G K + L + + K A I P++ T +
Sbjct: 1013 LEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQ-MMKNAGIEPTLATMH 1071
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK-VEEIYQMMKA 289
L+ + E +KD+ + Y+ +I Y+ + + +E + +M K
Sbjct: 1072 LLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKE 1131
Query: 290 GPVMPDTNTYLLLLRGYAHS 309
G + PD + +R + S
Sbjct: 1132 G-LEPDHRIWTCFVRAASFS 1150
>gi|147819559|emb|CAN76564.1| hypothetical protein VITISV_029137 [Vitis vinifera]
Length = 449
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 113/252 (44%), Gaps = 8/252 (3%)
Query: 62 LVRLLSE-TLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNG 120
LV ++E T + + + +K + + D+ + + RV D+ GS F++ S+
Sbjct: 104 LVMYMNELTXVFXNFKDKKGKFEEKLGIVDDFXGIISSAATILRVXDDLGSAXFKKSSDS 163
Query: 121 ------YAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDL 174
Y + E ++ + + + Q Y T+ + I G+ +
Sbjct: 164 KRFRSRYGYYEKAVLTLAKAKKFSFIEDILEHQKQYNEISTEVFAVRLITLYGKAGMFEH 223
Query: 175 AADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A LF E + +T+ ++NALL A + + DK F++L + I P +V+YN L+
Sbjct: 224 AHKLFDEMPKLNCERTVMSFNALLSACVNSKKFDKIDGFFQELPRNLGIVPDVVSYNILV 283
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F + +D + E++ L P++ T+N L+ + + E+I+ +MK V
Sbjct: 284 NAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNVFYQSGSNADGEKIWDLMKKNNVA 343
Query: 294 PDTNTYLLLLRG 305
P+ +Y LRG
Sbjct: 344 PNVRSYNAKLRG 355
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 10/94 (10%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA--- 248
T+N LL + +G + + ++ DL K+ N++P++ +YN + ++ + M A
Sbjct: 313 TFNTLLNVFYQSGSNADGEKIW-DLMKKNNVAPNVRSYNAKLR---GVISENRMSEAVNL 368
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
E+K S + P+VFT N L+ G+ A G +EE
Sbjct: 369 IDEMKTSGIKPDVFTLNSLMKGFCNA---GNLEE 399
>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 831
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 5/149 (3%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKK--EANISPSIVTYNTLISVFGRLLLVDHME 246
T+G YN L+ Y++ DKC ++FR LK E +SP++V+Y LI+++ +L +D
Sbjct: 331 TLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKAL 390
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
E++D + N TY+ +I GY+ +++ M + PD TY +L+ +
Sbjct: 391 QISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAF 450
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
+G +M + EL+ G P +R
Sbjct: 451 CKNG---QMNRALELLARMESGDCPPTLR 476
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 123/302 (40%), Gaps = 24/302 (7%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K F+ +KK P + L++ +G+ AAF+ ++ + + PNV +Y L
Sbjct: 179 KVVDAFKRIKK-----PKQRDHTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNL 233
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK---- 323
I Y A + M+A V P+ TY +++ GY G++ E+ ++
Sbjct: 234 IHAYAVAQDLRGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENW 293
Query: 324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL---NVLL---IRVY 377
HH D + +I AY K +++ EA+M + E+ L N+L+ +
Sbjct: 294 HHND----VIYNNIIHAYCKAG---NMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCR 346
Query: 378 AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC 437
A + CL + + E S T V C+++ Y + +DK E G +
Sbjct: 347 AVDKCLNVFRR-LKARTETGLSPTVVSY-GCLINLYSKLGKMDKALQISNEMEDQGIKHN 404
Query: 438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLG 497
R Y + Y SV ++M N I T+ I+ A+ GQ + ++L
Sbjct: 405 RKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLA 464
Query: 498 LM 499
M
Sbjct: 465 RM 466
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 2/159 (1%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
I ++ +D A + E ++ +K TY+ ++ Y+ G + S+F D+ A
Sbjct: 377 INLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSN-AG 435
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
I P +TYN L++ F + ++ ++ + P + TY +I G+M
Sbjct: 436 IKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAF 495
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
E + MK P TY +++ G A +G + R I +
Sbjct: 496 ETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIID 534
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 3/171 (1%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+ TYN ++ G D+ S+ ++ A + P+ +Y TLI + + +
Sbjct: 509 SAATYNVIMHGLAQAGQMDRAASIIDEMVV-AGVHPNERSYTTLIEGYACIGDMGLAFKY 567
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F IK+ L P+V Y L+ A I M A V + Y +LL G+A
Sbjct: 568 FNRIKEVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQ 627
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359
G++ I + ++H + + I A C D +K E + ++
Sbjct: 628 RGDMWEASDIMQKMRHEGLTPDIHSYTSFINAC--CKAGDMLKATETIEQM 676
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 85/225 (37%), Gaps = 39/225 (17%)
Query: 123 FVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEA 182
+ L +LG + AL++ N Q G ++ Y+ I ++ + A +F +
Sbjct: 376 LINLYSKLGKMDK-ALQISNEMEDQ---GIKHNRKTYSMIIDGYVQLGDTANAFSVFEDM 431
Query: 183 ANKHLKTIG-TYNALLGAYMYNGL------------SDKCQSLFR-------------DL 216
+N +K G TYN L+ A+ NG S C R DL
Sbjct: 432 SNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDL 491
Query: 217 K---------KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+ K A PS TYN ++ + +D + E+ + + PN +Y L
Sbjct: 492 RMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTL 551
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
I GY G + + +K + PD Y LL+ +G +
Sbjct: 552 IEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRM 596
>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 138/326 (42%), Gaps = 25/326 (7%)
Query: 9 DAAQTELLLQRLQRHSSKPKTLPPLSVFT-LTKSPNHSFT------RDLCAPATHTVFPT 61
D T L+ + + + PK F+ L + NH ++ R LC H +
Sbjct: 35 DRQLTPLIAFEVIKRFNNPKVGFKFLEFSRLNLNVNHCYSTYNLLMRSLCQMGHHDLVNI 94
Query: 62 LVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGY 121
+ + PD+++ L +A D D V ++L E R N +
Sbjct: 95 VFDYMGSDGHLPDSKLLGFLVT--------WMAQASDFDMVKKLLAEVQGKEVR--INSF 144
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAG--RINNVDLAADLF 179
+ L+ L + ++ + ++ P T +T I G R+ VD A ++F
Sbjct: 145 VYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDT---WTFNILIRGLCRVGGVDRAFEVF 201
Query: 180 AEAAN-KHLKTIGTYNALL-GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
+ + L + TYN L+ G N + C+ LF++++ ++ SP IVTY ++IS F
Sbjct: 202 KDMESFGCLPDVVTYNTLINGLCKANEVQRGCE-LFKEIQSRSDCSPDIVTYTSIISGFC 260
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN 297
+ + F+E+ S + PNV T+N LI G+ + E +Y+ M D
Sbjct: 261 KSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVV 320
Query: 298 TYLLLLRGYAHSGNLPRMEKIYELVK 323
T+ L+ GY +G + K + ++K
Sbjct: 321 TFTSLIDGYCRAGQVNHGLKFWNVMK 346
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/300 (21%), Positives = 125/300 (41%), Gaps = 43/300 (14%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N L+ G D+ +F+D++ + P +VTYNTLI+ + V F+E
Sbjct: 180 TFNILIRGLCRVGGVDRAFEVFKDMESFGCL-PDVVTYNTLINGLCKANEVQRGCELFKE 238
Query: 252 IKD-SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
I+ S+ SP++ TY +I+G+ + + +++ M + P+ T+ +L+ G+ G
Sbjct: 239 IQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIG 298
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS--VTDRIKKIEALMRLIPEKEYRPW 368
N+ E +Y R M AY CS V I+ R +
Sbjct: 299 NIAEAEAMY---------------RKM--AYFDCSADVVTFTSLIDGYCRAGQVNHGLKF 341
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
NV+ R + TV ++++ + N +++ +F+ +
Sbjct: 342 WNVMKTRNVSP----------------------TVYTYAVLINALCKENRLNEARDFLGQ 379
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+++ +Y+ + + V+E +LKEME + D K TF I+ + G+
Sbjct: 380 IKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGR 439
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 70/138 (50%), Gaps = 3/138 (2%)
Query: 168 RINNVDLAADLFAEAANKH--LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
+ N V +LF E ++ I TY +++ + +G + +LF ++ + + I P+
Sbjct: 225 KANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMR-SGIQPN 283
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
++T+N LI FG++ + EA ++++ + S +V T+ LI GY A + +
Sbjct: 284 VITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWN 343
Query: 286 MMKAGPVMPDTNTYLLLL 303
+MK V P TY +L+
Sbjct: 344 VMKTRNVSPTVYTYAVLI 361
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 101/231 (43%), Gaps = 32/231 (13%)
Query: 167 GRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G+I N+ A ++ + A + T+ +L+ Y G + F ++ K N+SP+
Sbjct: 295 GKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLK-FWNVMKTRNVSPT 353
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE--- 282
+ TY LI+ + ++ +IK+S++ P F YN +I G+ A G V+E
Sbjct: 354 VYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKA---GNVDEGNV 410
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342
I + M+ PD T+ +L+ G+ G +++E + F + A CA
Sbjct: 411 ILKEMEEKRCDPDKVTFTILIIGHCVKG------RMFEAINI------FNRMLATRCAPD 458
Query: 343 KCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED---CLEEMEKSI 390
+V I + L +P + YR IR A ED L EK+I
Sbjct: 459 NITVNSLISCL--LKAGMPNEAYR-------IRKMALEDRNLGLSSFEKAI 500
>gi|356558071|ref|XP_003547332.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Glycine max]
Length = 647
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 2/155 (1%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G P Y I GR VD+A F E N K + +YN+L+ NG D+
Sbjct: 468 GPPPDIFTYNILISSFGRAGRVDIAVKFFEELENSDCKPDVISYNSLINCLGKNGDVDEA 527
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
F++++ E ++P +VTY+TLI FG+ V+ F E+ +PN+ TYN L+
Sbjct: 528 HMRFKEMQ-EKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEECTPNLITYNILLD 586
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304
+ + ++Y +K + PD+ TY +L R
Sbjct: 587 CLERSGRTAEAVDLYAKLKQQGLTPDSITYAVLER 621
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 19/172 (11%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E I+ + YNT+ + GRL + H+ ++++K P++FTYN LI+ + A
Sbjct: 431 EKGITTDTIMYNTVFTALGRLKQISHIHDLYEKMKQDGPPPDIFTYNILISSFGRAGRVD 490
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338
+ ++ ++ PD +Y L+ +G++ ++ ++ + +I
Sbjct: 491 IAVKFFEELENSDCKPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLI 550
Query: 339 CAYSKCSVTDRIKKIEALMRLIPE---KEYRPWL---NVLLIRVYAKEDCLE 384
+ K TD K+E RL E +E P L N+LL DCLE
Sbjct: 551 ECFGK---TD---KVEMACRLFDEMLAEECTPNLITYNILL-------DCLE 589
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 4/139 (2%)
Query: 190 IGTYNALLGAYMYNGLSDKCQ-SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
I YN LL A + C +F D+K+ + P + TY +I + G+ D A
Sbjct: 232 IFGYNMLLDALAKD--EKVCSYKVFEDMKRR-HCEPDVFTYTIMIRMTGKSSKTDEALAL 288
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
FQ + +PN+ YN +I M K ++ M + P+ TY ++L
Sbjct: 289 FQAMLAKGCTPNLIGYNTMIEALAKGRMVDKAVLLFSKMVENDIQPNEFTYSVILNLLVA 348
Query: 309 SGNLPRMEKIYELVKHHVD 327
G L +++ I ++ K +++
Sbjct: 349 EGKLNKLDNIVDISKKYIN 367
>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
Length = 538
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 127/295 (43%), Gaps = 52/295 (17%)
Query: 93 LANVDDLDKVFRVLDEK-----------------GSCLFRRHSNGYAFVELMKQLGSRP- 134
L+ ++D+ RV+ E+ G C R + F+E M+Q+G RP
Sbjct: 168 LSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPN 227
Query: 135 RLALEVLNWRRRQAGYGTPMTK----EEYTKG-----IKFAGRINNVDLAADL-FAEAAN 184
+ L RQ G + + E+ KG + G ++ + A L A +
Sbjct: 228 EVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSV 287
Query: 185 KHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238
+ L+ G TY+ L+ + G D L D+++ + P +VTY+TLI+V +
Sbjct: 288 EELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNG-VKPDVVTYSTLINVLCK 346
Query: 239 -------LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L++ MEAA PNV TYN ++ G + +V +Y+MM
Sbjct: 347 ERKFQDAFRLLELMEAAGS-------PPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSR 399
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE---FPLIRAMICAYSK 343
PD TY +++ G + +G L K++EL+K +G + + ++ +C K
Sbjct: 400 CSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGK 454
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/269 (22%), Positives = 113/269 (42%), Gaps = 17/269 (6%)
Query: 98 DLDKVFRVLDE----KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTP 153
+LD+V R +E KG L GY R R ++E L RQ+G
Sbjct: 243 ELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEEL----RQSGVVPD 298
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL 212
+ Y+ I R D + +L + +K + TY+ L+ K Q
Sbjct: 299 VVT--YSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKE---RKFQDA 353
Query: 213 FR--DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
FR +L + A P++VTYN+++ + +D + ++ + S SP+V TY+ ++ G
Sbjct: 354 FRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNG 413
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
A M ++++++K+ PD Y +++ +G L +Y ++ V G
Sbjct: 414 LSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGMEVTVAGDN 473
Query: 331 F-PLIRAMICAYSKCSVTDRIKKIEALMR 358
+ ++ A TD ++I + R
Sbjct: 474 ICRALAGLVAALCDAKRTDSARRIVEVAR 502
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ G++++ L R+L +P++ YN +I+ R V ++
Sbjct: 56 TYKLVVDGLCGAGMANQALELVRELS--GVYTPTVFIYNGIITGLCRASRVMDAYKVLEK 113
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + ++ PNVFTY L+ G + E++Q MK P+ TY L++ + +G
Sbjct: 114 MVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGE 173
Query: 312 L 312
+
Sbjct: 174 I 174
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 2/162 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY LL + + + +F+++K+ P+ +TY TLI R +D E
Sbjct: 125 TYTILLNGLCRSNKTKLAREVFQEMKRNG-CKPNPITYGTLIQHLSRAGEIDEALRVMIE 183
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ L +V T ++ G A + + M+ V P+ TY L+ G+ G
Sbjct: 184 QRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGE 243
Query: 312 LPRMEKIYELVKHHVDGK-EFPLIRAMICAYSKCSVTDRIKK 352
L R+ + +E K G E + A K DR +K
Sbjct: 244 LDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARK 285
>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
Length = 813
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 104/254 (40%), Gaps = 39/254 (15%)
Query: 178 LFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
+ AE L YN ++ + G +K LF ++ + ISP + TYN +++
Sbjct: 204 MMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRG-ISPDLSTYNCVVNALC 262
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN 297
+ +D EA +++ D + P+ +TYN LI GY + W + + + M + ++PD
Sbjct: 263 KARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVV 322
Query: 298 T-----------------------------------YLLLLRGYAHSGNLPRMEKIYELV 322
T Y ++L GYA G L + +++ L+
Sbjct: 323 TLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLM 382
Query: 323 KHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR---LIPEKEYRPWLNVLLIRVYAK 379
+ + +I AY+KC + DR I MR + P+ + L R+
Sbjct: 383 LSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKM 442
Query: 380 EDCLEEMEKSINDA 393
+D +E+ + I+
Sbjct: 443 DDAVEKFNQMIDQG 456
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N L+ AY G+ D+ +F +++ E + P +VTY+T+I+ R+ +D F ++
Sbjct: 394 FNVLIKAYAKCGMLDRATIIFNEMR-EQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQM 452
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
D ++P++ TY++LI G+ T K ++ + QMM G + PD + ++ G
Sbjct: 453 IDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKG-MRPDIGCFNFIINNLCKLGR 511
Query: 312 LPRMEKIYEL 321
+ + I++
Sbjct: 512 VMDAQNIFDF 521
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 131/317 (41%), Gaps = 20/317 (6%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I RI +D A + F + ++ + +I TY+ L+ + +G K + L +
Sbjct: 429 YSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMM 488
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + P I +N +I+ +L V + F L PNV YN L+ GY +
Sbjct: 489 NKG-MRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGY---CLV 544
Query: 278 GKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
GK+E ++ +M + + P+ Y L+ GY G + ++ + H L
Sbjct: 545 GKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLY 604
Query: 335 RAMICAYSKC--SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE---MEKS 389
++ + +V ++K E I Y +++L ++ K C +E + K
Sbjct: 605 NIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYT--YSIVLGGLF-KNSCSDEAILLFKE 661
Query: 390 INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYA 449
++ A K +TT+ IM ++ F+ V++ + +G Y M
Sbjct: 662 LH-AMNVKIDITTLNIM---IAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLI 717
Query: 450 SQRRVEEMESVLKEMEN 466
+ VEE + + MEN
Sbjct: 718 KEGLVEEADDMFSSMEN 734
>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
Length = 538
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 127/295 (43%), Gaps = 52/295 (17%)
Query: 93 LANVDDLDKVFRVLDEK-----------------GSCLFRRHSNGYAFVELMKQLGSRP- 134
L+ ++D+ RV+ E+ G C R + F+E M+Q+G RP
Sbjct: 168 LSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPN 227
Query: 135 RLALEVLNWRRRQAGYGTPMTK----EEYTKG-----IKFAGRINNVDLAADL-FAEAAN 184
+ L RQ G + + E+ KG + G ++ + A L A +
Sbjct: 228 EVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSV 287
Query: 185 KHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238
+ L+ G TY+ L+ + G D L D+++ + P +VTY+TLI+V +
Sbjct: 288 EELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNG-VKPDVVTYSTLINVLCK 346
Query: 239 -------LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L++ MEAA PNV TYN ++ G + +V +Y+MM
Sbjct: 347 ERKFQDAFRLLELMEAAGS-------PPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSR 399
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE---FPLIRAMICAYSK 343
PD TY +++ G + +G L K++EL+K +G + + ++ +C K
Sbjct: 400 CSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGK 454
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 111/264 (42%), Gaps = 17/264 (6%)
Query: 98 DLDKVFRVLDE----KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTP 153
+LD+V R +E KG L GY R R ++E L RQ+G
Sbjct: 243 ELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEEL----RQSGVVPD 298
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL 212
+ Y+ I R D + +L + +K + TY+ L+ K Q
Sbjct: 299 VVT--YSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKE---RKFQDA 353
Query: 213 FR--DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
FR +L + A P++VTYN+++ + +D + ++ + S SP+V TY+ ++ G
Sbjct: 354 FRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNG 413
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
A M ++++++K+ PD Y +++ +G L +Y ++ V G
Sbjct: 414 LSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGMEVTVAGDN 473
Query: 331 F-PLIRAMICAYSKCSVTDRIKKI 353
+ ++ A TD ++I
Sbjct: 474 ICRALAGLVAALCDAERTDSARRI 497
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ G++++ L R+L +P++ YN +I+ R V ++
Sbjct: 56 TYKLVVDGLCGAGMANQALELVRELS--GVYTPTLFIYNGIITGLCRASRVMDAYKVLEK 113
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + ++ PNVFTY L+ G + E++Q MK P+ TY L++ + +G
Sbjct: 114 MVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGE 173
Query: 312 L 312
+
Sbjct: 174 I 174
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 2/162 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY LL + + + +F+++K+ P+ +TY TLI R +D E
Sbjct: 125 TYTILLNGLCRSNKTKLAREVFQEMKRNG-CKPNPITYGTLIQHLSRAGEIDEALRVMIE 183
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ L +V T ++ G A + + M+ V P+ TY L+ G+ G
Sbjct: 184 QRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGE 243
Query: 312 LPRMEKIYELVKHHVDGK-EFPLIRAMICAYSKCSVTDRIKK 352
L R+ + +E K G E + A K DR +K
Sbjct: 244 LDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARK 285
>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
Length = 759
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 1/182 (0%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
I AGR N + +FAE + + + TYN L+ Y G +L + K +
Sbjct: 231 ISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSG 290
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
I PS++TY+T+I + +L L A FQE+++ N+ P+ YN ++ + + +
Sbjct: 291 IEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAH 350
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAY 341
I + M+ D TY LL Y G + E +K A+I AY
Sbjct: 351 SIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAY 410
Query: 342 SK 343
K
Sbjct: 411 CK 412
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 109/255 (42%), Gaps = 11/255 (4%)
Query: 59 FPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLAN-VDDLDKVFRVLDEKGSCLFRRH 117
+PT +R+ E L + R +SA AN ++ D++F ++E+G R
Sbjct: 205 YPTALRIFREMLEQGMSPDRITFNTLISAAGR---ANRWEECDRIFAEMEERG---IARD 258
Query: 118 SNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAAD 177
Y + G + L ++ + +G + Y+ I ++ A
Sbjct: 259 DVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVIT--YSTMIDGYAKLGLAHEAIA 316
Query: 178 LFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
LF E N++++ G YN ++ + G D+ S+ R ++ EA + IVTYN L+ +
Sbjct: 317 LFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAME-EAGFAKDIVTYNALLDSY 375
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
G+ + +E+K SPN+ TY+ LI Y ++Q +K + PD
Sbjct: 376 GKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDV 435
Query: 297 NTYLLLLRGYAHSGN 311
Y L+ G +G+
Sbjct: 436 VLYSTLVDGCCKNGS 450
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
I TY+AL+ AY +G +LF+D+KK A + P +V Y+TL+ + D A
Sbjct: 399 NILTYSALIDAYCKHGFHRDAMALFQDVKK-AGLQPDVVLYSTLVDGCCKNGSPDEALAL 457
Query: 249 FQEIKDSNLSPNVFTYNYLIAGY 271
+E+ D+ + PNV TYN L+ Y
Sbjct: 458 LEEMADNGIRPNVITYNSLLDAY 480
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 3/151 (1%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
I GR+ D A +F A + Y++L+ AY +G K +F +K
Sbjct: 127 ISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAMK--VV 184
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
P++V YN +I + F+E+ + +SP+ T+N LI+ A W + +
Sbjct: 185 CKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECD 244
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
I+ M+ + D TY L+ Y G +
Sbjct: 245 RIFAEMEERGIARDDVTYNTLIATYCRGGQM 275
>gi|255551056|ref|XP_002516576.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544396|gb|EEF45917.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 416
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 87/361 (24%), Positives = 154/361 (42%), Gaps = 21/361 (5%)
Query: 117 HSNGYAFVELMKQLGSR-PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLA 175
+S+ + F L+ L S P A VL WR + Y+ I +I+NV LA
Sbjct: 62 NSSQFPFDALVTALASSSPEKARLVLEWRLDCMLKQNEIDHVHYSNLISLCAKIHNVSLA 121
Query: 176 ADLFAE-AANKHLKTIGTYNALLGAYMYNGLSD--KCQSLFRDLKKEANISPSIVTYNTL 232
+F N + +N+L+ + + +S+ SLF + P TY+T
Sbjct: 122 MRVFTSMEGNGIIPNTTVFNSLIQVCL-SSISNVLTALSLFEIMDISEFCKPDSQTYDTF 180
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
+ F L V M+A F K + + NV Y LI+ + K + ++ M + V
Sbjct: 181 VLGFSNLRDVVKMQAWFAAKKAAGYTANVQNYECLISTCVKTKDLDKADRLFDEMMSMGV 240
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELV---KHHVDGKEFPLIRAMICAYSKCSVTDR 349
MP +L G + R+ + + +G +I ++ YS+ +
Sbjct: 241 MPSAAILEWVLEGLCKRRDCDRVRGFLNFLLECRFEFNGN---MIEKIVELYSELG---K 294
Query: 350 IKKIEALMRLIPE----KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRI 405
+ ++E L+ + E E L+ +IR YAK D L+++E S+ +
Sbjct: 295 VDEMEKLLDICAEFNQVGETLSRLHCGIIRFYAKADRLDDVEYSVGRMTSSGMLFRSPDD 354
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGW-RLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
+ ++SSYFR A D+L F++ + G+ +L RS Y + Y E++E V+ +M
Sbjct: 355 VEKVISSYFRKEAYDRLDLFLEHVK--GYHKLTRSTYDLLVAGYRRAGLAEKLELVMLDM 412
Query: 465 E 465
+
Sbjct: 413 K 413
>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ N D + +FR+++ + I+P + +Y LI+ F +L + + F E
Sbjct: 594 TYTVLMNGLFKNDKVDDAEEIFREMRGKG-IAPDVFSYGVLINGFSKLGNMQKASSIFDE 652
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + L+PNV YN L+ G+ + K +E+ M + P+ TY ++ GY SG+
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD 712
Query: 312 LPRMEKIYELVK 323
L ++++ +K
Sbjct: 713 LAEAFRLFDEMK 724
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 2/151 (1%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ VD A ++F E K + + +Y L+ + G K S+F ++ +E ++P+++
Sbjct: 606 DKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG-LTPNVII 664
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN L+ F R ++ + E+ L PN TY +I GY + + ++ MK
Sbjct: 665 YNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK 724
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
++PD+ Y L+ G ++ R I+
Sbjct: 725 LKGLVPDSFVYTTLVDGCCRLNDVERAITIF 755
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 75/162 (46%), Gaps = 5/162 (3%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV-DLAADLFAEAANKHLKTIGTY 193
R E+L +++ +P T KG+ +G ++ ++ ++ A + + Y
Sbjct: 399 RQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPN---VVIY 455
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
L+ ++ N + +++K E I+P I YN+LI + +D + E+
Sbjct: 456 TTLIKTFLQNSRFGDAMRVLKEMK-EQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMV 514
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
++ L PN FTY I+GY+ A + ++ + M+ V+P+
Sbjct: 515 ENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPN 556
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 11/215 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG-AYMYNGLSDKCQSLFR--D 215
YT + R+N+V+ A +F + +NAL+ + + K + L R D
Sbjct: 735 YTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMD 794
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ P+ VTYN +I + ++ + F +++++NL P V TY L+ GY
Sbjct: 795 GSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMG 854
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE--LVKHHVDGK---E 330
++ ++ A + PD Y +++ + G + + + K+ VD
Sbjct: 855 RRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLS 914
Query: 331 FPLIRAMICAYSKCSVTDRIKKI-EALMRL--IPE 362
RA++ ++K + +K+ E ++RL IP+
Sbjct: 915 ISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPD 949
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 17/228 (7%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPRLAL--EVLNWRRRQAGYGTPM-----TKEE--- 158
KG C Y V+ M G RP + + ++ + + +G M KE+
Sbjct: 425 KGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIA 484
Query: 159 -----YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL 212
Y I + +D A E LK TY A + Y+
Sbjct: 485 PDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKY 544
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
++++ E + P+ V LI+ + + V +A++ + D + + TY L+ G
Sbjct: 545 VKEMR-ECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLF 603
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
EEI++ M+ + PD +Y +L+ G++ GN+ + I++
Sbjct: 604 KNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFD 651
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 28/227 (12%)
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
L P +TY+ LI G + + M + V D +TY LL+ G N
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331
Query: 316 EK-IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM---RLIPEKEYRPWLNV 371
+ ++E+V H ++ K + + IC SK V ++ K + M LIP+ + L
Sbjct: 332 KGLVHEMVSHGINIKPY-MYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASL-- 388
Query: 372 LLIRVYAKE-------DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA--VDKL 422
I Y +E + L EM+K N T T V+ M C++ +D
Sbjct: 389 --IEGYCREKNVRQGYELLVEMKKR-NIVISPYTYGTVVKGM---------CSSGDLDGA 436
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI 469
N VK ++G R +Y + + + R + VLKEM+ I
Sbjct: 437 YNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGI 483
>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ N D + +FR+++ + I+P + +Y LI+ F +L + + F E
Sbjct: 594 TYTVLMNGLFKNDKVDDAEEIFREMRGKG-IAPDVFSYGVLINGFSKLGNMQKASSIFDE 652
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + L+PNV YN L+ G+ + K +E+ M + P+ TY ++ GY SG+
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD 712
Query: 312 LPRMEKIYELVK 323
L ++++ +K
Sbjct: 713 LAEAFRLFDEMK 724
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 2/151 (1%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ VD A ++F E K + + +Y L+ + G K S+F ++ +E ++P+++
Sbjct: 606 DKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG-LTPNVII 664
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN L+ F R ++ + E+ L PN TY +I GY + + ++ MK
Sbjct: 665 YNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK 724
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
++PD+ Y L+ G ++ R I+
Sbjct: 725 LKGLVPDSFVYTTLVDGCCRLNDVERAITIF 755
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 80/179 (44%), Gaps = 5/179 (2%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV-DLAADLFAEAANKHLKTIGTY 193
R E+L +++ +P T KG+ +G ++ ++ ++ A + + Y
Sbjct: 399 RQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPN---VVIY 455
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
L+ ++ N + +++K E I+P I YN+LI + +D + E+
Sbjct: 456 TTLIKTFLQNSRFGDAMRVLKEMK-EQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMV 514
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
++ L PN FTY I+GY+ A + ++ + M+ V+P+ L+ Y G +
Sbjct: 515 ENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKV 573
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 11/215 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG-AYMYNGLSDKCQSLFR--D 215
YT + R+N+V+ A +F + +NAL+ + + K + L R D
Sbjct: 735 YTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMD 794
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ P+ VTYN +I + ++ + F +++++NL P V TY L+ GY
Sbjct: 795 GSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMG 854
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE--LVKHHVDGK---E 330
++ ++ A + PD Y +++ + G + + + K+ VD
Sbjct: 855 RRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLS 914
Query: 331 FPLIRAMICAYSKCSVTDRIKKI-EALMRL--IPE 362
RA++ ++K + +K+ E ++RL IP+
Sbjct: 915 ISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPD 949
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 17/228 (7%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPRLAL--EVLNWRRRQAGYGTPM-----TKEE--- 158
KG C Y V+ M G RP + + ++ + + +G M KE+
Sbjct: 425 KGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIA 484
Query: 159 -----YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL 212
Y I + +D A E LK TY A + Y+
Sbjct: 485 PDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKY 544
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
++++ E + P+ V LI+ + + V +A++ + D + + TY L+ G
Sbjct: 545 VKEMR-ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLF 603
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
EEI++ M+ + PD +Y +L+ G++ GN+ + I++
Sbjct: 604 KNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFD 651
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 28/227 (12%)
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
L P +TY+ LI G + + M + V D +TY LL+ G N
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331
Query: 316 EK-IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM---RLIPEKEYRPWLNV 371
+ ++E+V H ++ K + + IC SK V ++ K + M LIP+ + L
Sbjct: 332 KGLVHEMVSHGINIKPY-MYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASL-- 388
Query: 372 LLIRVYAKE-------DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA--VDKL 422
I Y +E + L EM+K N T T V+ M C++ +D
Sbjct: 389 --IEGYCREKNVRQGYELLVEMKKR-NIVISPYTYGTVVKGM---------CSSGDLDGA 436
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI 469
N VK ++G R +Y + + + R + VLKEM+ I
Sbjct: 437 YNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGI 483
>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
Length = 1245
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAY-MYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
A +L+ E + + I TYN L+ Y M N LS+ L DL SP IVT+ +L
Sbjct: 307 ANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML--DLMVRNKCSPDIVTFTSL 364
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I + + VD F+ I L N TY+ L+ G+ + EE++Q M + V
Sbjct: 365 IKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV 424
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHVD 327
+PD TY +LL G +G L + +I+E L K +D
Sbjct: 425 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 460
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 2/149 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I R +D A LF E K +K+ + TYN+L+ G + L +D+
Sbjct: 221 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 280
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
I P+++T+N L+ VF + + ++E+ +SPN+ TYN L+ GY
Sbjct: 281 SR-EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 339
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
+ + +M PD T+ L++GY
Sbjct: 340 SEANNMLDLMVRNKCSPDIVTFTSLIKGY 368
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 3/160 (1%)
Query: 161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
KG+ G+++ + D E N + TYN+++ +G + L R ++ E
Sbjct: 156 KGLFLEGKVSEAVVLVDRMVE--NGCQPDVVTYNSIVNGICRSGDTSLALDLLRKME-ER 212
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
N+ + TY+T+I R +D + F+E++ + +V TYN L+ G A W
Sbjct: 213 NVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDG 272
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ + M + ++P+ T+ +LL + G L ++Y+
Sbjct: 273 ALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYK 312
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)
Query: 168 RINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R + LA DL + +++K + TY+ ++ + +G D SLF++++ + I S+
Sbjct: 195 RSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG-IKSSV 253
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTYN+L+ + + +++ + PNV T+N L+ ++ + E+Y+
Sbjct: 254 VTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKE 313
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
M + P+ TY L+ GY L + +L+
Sbjct: 314 MITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 349
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 22/216 (10%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR 168
KG C+ +R +G +++ + + R +A +T +G +G+
Sbjct: 366 KGYCMVKRVDDG---MKVFRNISKRGLVA--------------NAVTYSILVQGFCQSGK 408
Query: 169 INNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
I LA +LF E ++ L + TY LL NG +K +F DL+K + + IV
Sbjct: 409 IK---LAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQK-SKMDLGIV 464
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
Y T+I + V+ F + + PNV TY +I+G + + + M
Sbjct: 465 MYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM 524
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+ P+ TY L+R + G+L K+ E +K
Sbjct: 525 EEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 560
>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
Length = 700
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 75/378 (19%), Positives = 159/378 (42%), Gaps = 15/378 (3%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG 191
R + +LE N + + GY + Y + + +D+A +LFA+ N +
Sbjct: 265 GRFKESLEAFNLMK-EMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMINNGVSCNN 323
Query: 192 -TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TY +++ + + L D+ + N +P +VTY +IS + +++ Q
Sbjct: 324 LTYTSMIQCFFLKEKMEDAMKLLDDMIQN-NYAPDVVTYTIVISALCKRKMIEQAYGVLQ 382
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+++++ PN++TYN LI G + E+ +M+ G V P+ TY +L G
Sbjct: 383 KMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLC--- 439
Query: 311 NLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
L R+++ E+ + P ++ Y + S R+ + +++ + + + P
Sbjct: 440 KLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGS---RLIEAMDILKEMHQNDCTP 496
Query: 368 --WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
LI+ + + L + + ++D E+K + + R + F
Sbjct: 497 DHVTYTTLIQGLVQGNQLPDALR-MHDEMENKGYDVNFDTLNILARGLARVGNHKDASIF 555
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
+R + G+ S Y+ + ++ +EE +++L EM N + T+ M +
Sbjct: 556 YRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKGFCR 615
Query: 486 CGQRRKVNQVLGLMCKNG 503
G+ + +L M +NG
Sbjct: 616 QGRLDDADAMLNFMIENG 633
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 47/109 (43%)
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
S+F K+ + S Y I ++ +A E+ + SPN+ TYN +I G
Sbjct: 553 SIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPNLTTYNTMIKG 612
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ + + M + PDT +Y +L++ + + G +++Y
Sbjct: 613 FCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQLY 661
>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
Length = 760
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 1/182 (0%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
I AGR N + +FAE + + + TYN L+ Y G +L + K +
Sbjct: 232 ISAAGRANRWEECDRIFAEMEERGIARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSG 291
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
I PS++TY+T+I + +L L A FQE+++ N+ P+ YN ++ + + +
Sbjct: 292 IEPSVITYSTMIDGYAKLGLAHEAIALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAH 351
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAY 341
I + M+ D TY LL Y G + E +K A+I AY
Sbjct: 352 SIRRAMEEAGFAKDIVTYNALLDSYGKQGKFREAMSLLEEMKQRGASPNILTYSALIDAY 411
Query: 342 SK 343
K
Sbjct: 412 CK 413
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 109/255 (42%), Gaps = 11/255 (4%)
Query: 59 FPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLAN-VDDLDKVFRVLDEKGSCLFRRH 117
+PT +R+ E L + R +SA AN ++ D++F ++E+G R
Sbjct: 206 YPTALRIFREMLEQGMSPDRITFNTLISAAGR---ANRWEECDRIFAEMEERG---IARD 259
Query: 118 SNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAAD 177
Y + G + L ++ + +G + Y+ I ++ A
Sbjct: 260 DVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVIT--YSTMIDGYAKLGLAHEAIA 317
Query: 178 LFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
LF E N++++ G YN ++ + G D+ S+ R ++ EA + IVTYN L+ +
Sbjct: 318 LFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAME-EAGFAKDIVTYNALLDSY 376
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
G+ + +E+K SPN+ TY+ LI Y ++Q +K + PD
Sbjct: 377 GKQGKFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDV 436
Query: 297 NTYLLLLRGYAHSGN 311
Y L+ G +G+
Sbjct: 437 VLYSTLVDGCCKNGS 451
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
I TY+AL+ AY +G +LF+D+KK A + P +V Y+TL+ + D A
Sbjct: 400 NILTYSALIDAYCKHGFHRDAMALFQDVKK-AGLQPDVVLYSTLVDGCCKNGSPDEALAL 458
Query: 249 FQEIKDSNLSPNVFTYNYLIAGY 271
+E+ D+ + PNV TYN L+ Y
Sbjct: 459 LEEMADNGIRPNVITYNSLLDAY 481
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 3/151 (1%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
I GR+ D A +F A + Y++L+ AY +G K +F +K
Sbjct: 128 ISSLGRLGRSDWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIFEAMK--VV 185
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
P++V YN +I + F+E+ + +SP+ T+N LI+ A W + +
Sbjct: 186 CKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECD 245
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
I+ M+ + D TY L+ Y G +
Sbjct: 246 RIFAEMEERGIARDDVTYNTLIATYCRGGQM 276
>gi|255555097|ref|XP_002518586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542431|gb|EEF43973.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 377
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 1/146 (0%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
I+ G+ N D + +F E +++ K T+ ++NALL A + + D+ LFR L KE
Sbjct: 100 IRLYGKSNMFDNSRKVFDEMPDRNCKRTVVSFNALLAACVTSKKFDEVDGLFRKLPKELE 159
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
I P V+YNT+I + + +D + E++ P++ T+N L+ G+ + ++ E
Sbjct: 160 IKPDTVSYNTVIKGYCEMGALDKAISLLVEMEMKGNPPDLITFNTLLNGFYSNGLFVDGE 219
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYA 307
I+ M ++PD +Y L G A
Sbjct: 220 RIWSQMVQKSIVPDIRSYNAKLLGLA 245
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 97/200 (48%), Gaps = 14/200 (7%)
Query: 193 YNA-LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YNA L+ Y + + D + +F ++ + N ++V++N L++ D ++ F++
Sbjct: 95 YNARLIRLYGKSNMFDNSRKVFDEMP-DRNCKRTVVSFNALLAACVTSKKFDEVDGLFRK 153
Query: 252 I-KDSNLSPNVFTYNYLIAGYMTAWMWGK-VEEIYQM-MKAGPVMPDTNTYLLLLRGYAH 308
+ K+ + P+ +YN +I GY K + + +M MK P PD T+ LL G+
Sbjct: 154 LPKELEIKPDTVSYNTVIKGYCEMGALDKAISLLVEMEMKGNP--PDLITFNTLLNGFYS 211
Query: 309 SGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
+G E+I+ ++V+ + P IR+ ++ R K L++ + K +P
Sbjct: 212 NGLFVDGERIWSQMVQKSI----VPDIRSYNAKLLGLALVKRTKDAVLLLQEMKSKGIKP 267
Query: 368 WLNVL--LIRVYAKEDCLEE 385
+ LI+ + KE+ LEE
Sbjct: 268 DVISFNALIKGFVKEENLEE 287
>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 9/211 (4%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A DLF E + ++ + TYN L+G + + L +KK A +SP+++TYNTLI
Sbjct: 286 AFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAA-VSPNLITYNTLI 344
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
F + +D + ++K + LSP++ TYN LI GY A W V ++ + M+ +
Sbjct: 345 GGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRGIS 404
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P T +L+ Y L MEK +++ P + + +K+
Sbjct: 405 PSKVTCTVLIDAYVR---LQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKES 461
Query: 354 EALMRLIPEKEYRPWLNVL---LIRVYAKED 381
L R + E P +V+ +I Y KED
Sbjct: 462 SKLFRSMGEMHVEPS-DVIYNTMIHGYCKED 491
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
Query: 169 INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+ N+D A+ L + + L ++ TYN L+ Y G L R+++ ISPS V
Sbjct: 350 VGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREMEGRG-ISPSKV 408
Query: 228 TYNTLISVFGRLLLVDHMEAAFQ---EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
T LI + RL ME AFQ ++ L P+V+ Y LI G + +++
Sbjct: 409 TCTVLIDAYVRL---QEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLF 465
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ M V P Y ++ GY N
Sbjct: 466 RSMGEMHVEPSDVIYNTMIHGYCKEDN 492
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 60/301 (19%), Positives = 114/301 (37%), Gaps = 38/301 (12%)
Query: 203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF 262
NG DK L L ++ +SP++V Y TLI + ++ F ++ + L N +
Sbjct: 175 NGNLDKSFQLL-GLLQDMGLSPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQY 233
Query: 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
T+ LI G + ++++ MK + P+ TY L+ Y G + R +++ +
Sbjct: 234 TFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEM 293
Query: 323 KHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC 382
+ + A + Y+ I + R E R W
Sbjct: 294 RERG-------VEANVVTYNTL--------IGGMCR-----EERVW-------------- 319
Query: 383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYH 442
E EK + D + + ++ + +DK ++ + + +S G Y+
Sbjct: 320 --EAEKLV-DQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYN 376
Query: 443 SKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502
+ Y+ + + + +EME I SK T ++ AY + K Q+ M K
Sbjct: 377 ILIEGYSKAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKF 436
Query: 503 G 503
G
Sbjct: 437 G 437
>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 624
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 139/325 (42%), Gaps = 21/325 (6%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ TYN ++ Y G + +F+ +K + N+ P TYN+ IS + ++
Sbjct: 252 VVTYNTVINGYCLRGKFEAASKIFKTMK-DKNLKPDCYTYNSFISRLCKERRIEEASGVL 310
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY----QMMKAGPVMPDTNTYLLLLRG 305
++ +S L PN TYN LI G G +++ + +MM G ++ TY LL+
Sbjct: 311 CKLLESGLVPNAVTYNALIDGCCNK---GDLDKAFAYRDEMMNRG-IVASVFTYNLLIHA 366
Query: 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALMRLIPE 362
R+E+ +++K + P + I Y +C KK +L + E
Sbjct: 367 LFLEK---RIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCG---NAKKALSLFDEMVE 420
Query: 363 KEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420
K RP + LI V+ K + + E E+ + + + + + + ++ + +D
Sbjct: 421 KNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIK-EGMLPDIIMFNALIDGHCVNGNID 479
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480
+ +K ++A +++ M Y +R+VEE + +L EM+ I ++ +
Sbjct: 480 RAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLI 539
Query: 481 YAYATCGQRRKVNQVLGLMCKNGYD 505
Y+ G + +V M G+D
Sbjct: 540 SGYSKRGDMKDALEVFDEMLSLGFD 564
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 86/176 (48%), Gaps = 8/176 (4%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
++ A D+ E K ++ + TYN + Y G + K SLF ++ E NI P++ TY
Sbjct: 373 IEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMV-EKNIRPTVETYT 431
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA- 289
+LI VFG+ + E F++ + P++ +N LI G+ + G ++ +Q++K
Sbjct: 432 SLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGH---CVNGNIDRAFQLLKEM 488
Query: 290 --GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
V+PD T+ L++GY + +K+ + +K + +I YSK
Sbjct: 489 DNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSK 544
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 2/165 (1%)
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLF 213
T E YT I G+ N + A + F ++ + L I +NAL+ + NG D+ L
Sbjct: 426 TVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLL 485
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+++ A + P VT+NTL+ + R V+ + E+K+ + P+ +YN LI+GY
Sbjct: 486 KEMDN-AKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSK 544
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
E++ M + P TY L++GY+ G E++
Sbjct: 545 RGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEEL 589
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 171 NVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
N+D A L E N K + T+N L+ Y ++ + L ++K E I P ++Y
Sbjct: 477 NIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMK-ERGIKPDHISY 535
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
NTLIS + + + F E+ P + TYN LI GY EE+ + M++
Sbjct: 536 NTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQS 595
Query: 290 GPVMPDTNTYLLLLRGYAHSGNL 312
+ PD +TYL ++ + +L
Sbjct: 596 KGITPDDSTYLYVIEAMKTNDDL 618
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 121/300 (40%), Gaps = 15/300 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYNAL+ G DK + +RD I S+ TYN LI ++ E +E
Sbjct: 324 TYNALIDGCCNKGDLDKAFA-YRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKE 382
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ + P+V TYN I GY K ++ M + P TY L+ + G
Sbjct: 383 MREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVF---GK 439
Query: 312 LPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALM---RLIPEKEY 365
RM + E K + P + A+I + DR ++ M +++P++
Sbjct: 440 RNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDE-- 497
Query: 366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
N L+ + Y +E +EE +K +++ E + I R + D L F
Sbjct: 498 -VTFNTLM-QGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVF 555
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
S G+ Y++ + Y+ + E +L+EM++ I T+ + A T
Sbjct: 556 -DEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEAMKT 614
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD-------SNLSPNVFTYNYLIAGYMT 273
NI SIVT+N +I++ R E +++ KD + PNV TYN +I GY
Sbjct: 212 NIKSSIVTFNIMINILCR-------EGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCL 264
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTY 299
+ +I++ MK + PD TY
Sbjct: 265 RGKFEAASKIFKTMKDKNLKPDCYTY 290
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 127/331 (38%), Gaps = 44/331 (13%)
Query: 186 HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM 245
++KT ++ LL AY D+ +L KE I P T N+L+S+ +L +
Sbjct: 143 NVKTTLVFDLLLSAYCQFRKPDEALECL-NLMKENEIIPKTETCNSLLSLLLKLNKIKMA 201
Query: 246 EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
++E+ N+ ++ T+N +I W K ++ M+ V P+ TY ++ G
Sbjct: 202 WFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVING 261
Query: 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY 365
Y G KI++ +K D P S+ RI++ ++ + E
Sbjct: 262 YCLRGKFEAASKIFKTMK---DKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGL 318
Query: 366 RP---WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
P N L+ K D ++ AF ++ + R IV+S F N
Sbjct: 319 VPNAVTYNALIDGCCNKGD--------LDKAFAYRDEMMN----RGIVASVFTYNL---- 362
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482
L H+ + ++R+EE E ++KEM ++ T+ I
Sbjct: 363 -----------------LIHALFL----EKRIEEAEDMIKEMREKGVEPDVVTYNIQING 401
Query: 483 YATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
Y CG +K + M + V + S
Sbjct: 402 YCRCGNAKKALSLFDEMVEKNIRPTVETYTS 432
>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g61990, mitochondrial; Flags: Precursor
gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 974
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ N D + +FR+++ + I+P + +Y LI+ F +L + + F E
Sbjct: 594 TYTVLMNGLFKNDKVDDAEEIFREMRGKG-IAPDVFSYGVLINGFSKLGNMQKASSIFDE 652
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + L+PNV YN L+ G+ + K +E+ M + P+ TY ++ GY SG+
Sbjct: 653 MVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD 712
Query: 312 LPRMEKIYELVK 323
L ++++ +K
Sbjct: 713 LAEAFRLFDEMK 724
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 2/151 (1%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ VD A ++F E K + + +Y L+ + G K S+F ++ +E ++P+++
Sbjct: 606 DKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG-LTPNVII 664
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN L+ F R ++ + E+ L PN TY +I GY + + ++ MK
Sbjct: 665 YNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMK 724
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
++PD+ Y L+ G ++ R I+
Sbjct: 725 LKGLVPDSFVYTTLVDGCCRLNDVERAITIF 755
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 80/179 (44%), Gaps = 5/179 (2%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV-DLAADLFAEAANKHLKTIGTY 193
R E+L +++ +P T KG+ +G ++ ++ ++ A + + Y
Sbjct: 399 RQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPN---VVIY 455
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
L+ ++ N + +++K E I+P I YN+LI + +D + E+
Sbjct: 456 TTLIKTFLQNSRFGDAMRVLKEMK-EQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMV 514
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
++ L PN FTY I+GY+ A + ++ + M+ V+P+ L+ Y G +
Sbjct: 515 ENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKV 573
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 94/215 (43%), Gaps = 11/215 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG-AYMYNGLSDKCQSLFR--D 215
YT + R+N+V+ A +F + +NAL+ + + K + L R D
Sbjct: 735 YTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMD 794
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ P+ VTYN +I + ++ + F +++++NL P V TY L+ GY
Sbjct: 795 GSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMG 854
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE--LVKHHVDGK---E 330
++ ++ A + PD Y +++ + G + + + K+ VD
Sbjct: 855 RRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLS 914
Query: 331 FPLIRAMICAYSKCSVTDRIKKI-EALMRL--IPE 362
RA++ ++K + +K+ E ++RL IP+
Sbjct: 915 ISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPD 949
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 17/228 (7%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPRLAL--EVLNWRRRQAGYGTPM-----TKEE--- 158
KG C Y V+ M G RP + + ++ + + +G M KE+
Sbjct: 425 KGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIA 484
Query: 159 -----YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL 212
Y I + +D A E LK TY A + Y+
Sbjct: 485 PDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKY 544
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
++++ E + P+ V LI+ + + V +A++ + D + + TY L+ G
Sbjct: 545 VKEMR-ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLF 603
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
EEI++ M+ + PD +Y +L+ G++ GN+ + I++
Sbjct: 604 KNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFD 651
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 93/227 (40%), Gaps = 28/227 (12%)
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
L P +TY+ LI G + + M + V D +TY LL+ G N
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331
Query: 316 EK-IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM---RLIPEKEYRPWLNV 371
+ ++E+V H ++ K + + IC SK V ++ K + M LIP+ + L
Sbjct: 332 KGLVHEMVSHGINIKPY-MYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASL-- 388
Query: 372 LLIRVYAKE-------DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA--VDKL 422
I Y +E + L EM+K N T T V+ M C++ +D
Sbjct: 389 --IEGYCREKNVRQGYELLVEMKKR-NIVISPYTYGTVVKGM---------CSSGDLDGA 436
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI 469
N VK ++G R +Y + + + R + VLKEM+ I
Sbjct: 437 YNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGI 483
>gi|356522073|ref|XP_003529674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 685
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 164/376 (43%), Gaps = 22/376 (5%)
Query: 64 RLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAF 123
R++ L Y R+R + + ++ DLD + ++ DE R + ++
Sbjct: 143 RVVPFVLNYFQRRIRPTREVILYNVTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVTFST 202
Query: 124 VELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA 183
+ ++ S P A+E W + + +G Y+ I GR N+D+A L+ A
Sbjct: 203 IISCARICSLPNKAVE---WFEKMSSFGCEPDDVTYSAMIDAYGRAGNIDMALRLYDRAR 259
Query: 184 NK--HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241
+ L T+ T++ L+ Y G D C ++++++K + P++V YNTL+ GR
Sbjct: 260 TEKWRLDTV-TFSTLIKMYGLAGNYDGCLNVYQEMKV-LGVKPNMVIYNTLLDAMGRAKR 317
Query: 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301
++ + E+ ++ SPN TY L+ Y +Y+ MK + +T+ Y
Sbjct: 318 PWQAKSIYTEMTNNGFSPNWVTYASLLRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNT 377
Query: 302 LLRGYAHSGNLPRMEKIYELVKHHV----DGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357
LL A G +I+E +K D F ++I Y S T + + E ++
Sbjct: 378 LLAMCADLGLANEAFEIFEDMKTSATCLCDSWTF---SSLITIY---SCTGNVSEAERML 431
Query: 358 RLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR 415
+ E +P + VL L++ Y K +++ K+ N + S R C+++ +
Sbjct: 432 NEMIESGSQPTIFVLTSLVQCYGKVGRTDDVVKTFNQLLDLGISPDD-RFCGCLLNVMTQ 490
Query: 416 C--NAVDKLANFVKRA 429
+ KL + VK+A
Sbjct: 491 TPKEELGKLNDCVKKA 506
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 57/285 (20%), Positives = 110/285 (38%), Gaps = 15/285 (5%)
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
++ YN + VF + +D ME F E+ + P+ T++ +I+ + K E ++
Sbjct: 162 VILYNVTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVTFSTIISCARICSLPNKAVEWFE 221
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
M + PD TY ++ Y +GN+ ++Y+ + + +I Y
Sbjct: 222 KMSSFGCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDTVTFSTLIKMYGLAG 281
Query: 346 VTDRIKKIEALMRLIPEKEYRPWLNVLLI------RVYAKEDCLEEMEKSINDAFEHKTS 399
D + M+++ K N LL R + + EM N+ F
Sbjct: 282 NYDGCLNVYQEMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEM---TNNGFS-PNW 337
Query: 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES 459
VT ++R +Y R + K + G + LY++ + M A E
Sbjct: 338 VTYASLLR----AYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLANEAFE 393
Query: 460 VLKEMENYKID-CSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ ++M+ C TF + Y+ G + ++L M ++G
Sbjct: 394 IFEDMKTSATCLCDSWTFSSLITIYSCTGNVSEAERMLNEMIESG 438
>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
Length = 814
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 73/382 (19%), Positives = 143/382 (37%), Gaps = 54/382 (14%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
G+ D + AE + YN ++ + G +K LF+++ + I P
Sbjct: 196 GKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRG-IPPDF 254
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTY++++ + +D EA +++ + + PN +TYN LI GY + W + +++
Sbjct: 255 VTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 314
Query: 287 MKAGPVMPDTNT-----------------------------------YLLLLRGYAHSGN 311
M+ ++PD T Y ++L GYA G
Sbjct: 315 MRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGC 374
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
L M +++L+ +I AY+ C + D+ I MR + +P NV
Sbjct: 375 LVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMR---DHGVKP--NV 429
Query: 372 L--------LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLA 423
L L R+ +D +E+ + I+ C++ + ++ K
Sbjct: 430 LTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYA-----YHCLIQGFCTHGSLLKAK 484
Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
+ + G L L+ S + RV + +++ N + + + ++ Y
Sbjct: 485 ELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGY 544
Query: 484 ATCGQRRKVNQVLGLMCKNGYD 505
G+ K +V M G +
Sbjct: 545 CLVGKMEKALRVFDAMVSAGIE 566
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 12/152 (7%)
Query: 163 IKFAGRINN------VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRD 215
+ F+ INN V A ++F N L T Y+ L+ Y G +K +F D
Sbjct: 500 VLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVF-D 558
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
A I P+ V Y TL++ + ++ +D + F+E+ + P+ YN +I G A
Sbjct: 559 AMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAG 618
Query: 276 --MWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ KV + ++M ++G M + TY ++LRG
Sbjct: 619 RTVPAKV-KFHEMTESGIAM-NKCTYSIVLRG 648
Score = 45.1 bits (105), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ +L N D+ LF++L+ N+ I+T NT+I+ + V+ + F
Sbjct: 641 TYSIVLRGLFKNRCFDEAIFLFKELRA-MNVKIDIITLNTMIAGMFQTRRVEEAKDLFAS 699
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
I S L P V TY+ +I + + + E+++ M+ PD+
Sbjct: 700 ISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDS 744
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 60/303 (19%), Positives = 116/303 (38%), Gaps = 59/303 (19%)
Query: 175 AADLFAEAANK--HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
A +L +E N HL + +++++ G Q++F DL + P+ V Y+ L
Sbjct: 483 AKELISEIMNNGMHLDIV-LFSSIINNLCKLGRVMDAQNIF-DLTVNVGLHPTAVVYSML 540
Query: 233 ISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQM 286
+ + LV ME A F + + + PN Y L+ GY G+++E +++
Sbjct: 541 MDGY---CLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCK---IGRIDEGLSLFRE 594
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
M + P T Y +++ G +G +P K +E+ + + A +KC+
Sbjct: 595 MLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGI-------------AMNKCT 641
Query: 346 VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIND--AFEHKTSVTTV 403
+ +++R K C +E + A K + T+
Sbjct: 642 YS------------------------IVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITL 677
Query: 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463
M ++ F+ V++ + +G C Y + + VEE E +
Sbjct: 678 NTM---IAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSS 734
Query: 464 MEN 466
M+N
Sbjct: 735 MQN 737
>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
Length = 748
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 123/300 (41%), Gaps = 58/300 (19%)
Query: 134 PRLALEVLN----WRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK- 188
P LA+E+ W A P T Y I R++ +LA +F L
Sbjct: 97 PALAVELFKRMDRWACPHAAADAP-TIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGP 155
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+ +YN L+ + G DK LF + E ++SP +VTYN+LI + + E
Sbjct: 156 DVCSYNTLIDGFSKEGEVDKAYELFYKMI-EQSVSPDVVTYNSLIDGLCKTKEMVKSERV 214
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP---DTNTYLLLLRG 305
+++ D+ + PN TYN LI GY TA MW + +++ M + ++P + N++
Sbjct: 215 LEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSF------ 268
Query: 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY 365
I+ L +H +RIK+ + + + K
Sbjct: 269 ------------IHALCRH-----------------------NRIKEAKDIFDSMVLKGP 293
Query: 366 RPWLNVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
+P N++ L+ YA E C M +N K V R ++++Y RC +DK
Sbjct: 294 KP--NIISYSTLLHGYAAEGCFANMNSLVN-LMVSKGIVPNHRFFNILINAYARCGMMDK 350
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/303 (18%), Positives = 126/303 (41%), Gaps = 14/303 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ Y G+ + +F+++ I P +V N+ I R + + F
Sbjct: 229 TYNSLIYGYSTAGMWKESVRVFKEMSSSGLI-PCVVNCNSFIHALCRHNRIKEAKDIFDS 287
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ PN+ +Y+ L+ GY + + + +M + ++P+ + +L+ YA G
Sbjct: 288 MVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGM 347
Query: 312 LPRMEKIYELVKHH---VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL-IPEKE--Y 365
+ + I+E +++ D F + + +C + + D + K ++ + +P E Y
Sbjct: 348 MDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGR--LDDALHKFNHMVDIGVPPSEAVY 405
Query: 366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
R LI+ L + ++ I++ V+ I+++ F+ V + +
Sbjct: 406 R-----CLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDI 460
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
+ G R ++S M Y +EE ++L M + I+ + + + Y
Sbjct: 461 MDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCK 520
Query: 486 CGQ 488
G+
Sbjct: 521 NGR 523
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 81/204 (39%), Gaps = 17/204 (8%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPRLAL--EVLNWRRRQAGYGTPMT--KEEYTKGIK 164
+G CL +A ++ M +G P + +++ + +T ++ KG+K
Sbjct: 481 EGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVK 540
Query: 165 FAGRINNVDL-----------AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL 212
+ N+ L A +F E +I TY +LG N +D+ L
Sbjct: 541 PTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANML 600
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
L N+ I+T+N +IS ++ + F I L P V TYN +I+ +
Sbjct: 601 LEKLFA-MNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLI 659
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDT 296
+ + + ++ ++ PD+
Sbjct: 660 KEESYEEADNLFISVEKSGRAPDS 683
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 13/162 (8%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDL--AADLFAEAANKHLKTIGT--YNALLGAYMYNGLS 206
G P ++ Y I+ G N+ +L A +L +E NK + G +++++ G
Sbjct: 397 GVPPSEAVYRCLIQ--GCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRV 454
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF---QEIKDSNLSPNVFT 263
+ + + DL + P++VT+N+L+ + LV +ME AF + + PN +
Sbjct: 455 AEGKDIM-DLMVQTGQRPNVVTFNSLMEGY---CLVGNMEEAFALLDAMASIGIEPNCYI 510
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
Y L+ GY +++ M V P + Y ++L G
Sbjct: 511 YGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHG 552
>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G P Y I GR VD A +F E N + + + +YN+L+ NG D+
Sbjct: 460 GPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEA 519
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
F++++ E ++P +VTY+TLI FG+ V+ + F E+ SPN+ TYN L+
Sbjct: 520 HMRFKEMQ-EKGLNPDVVTYSTLIECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLD 578
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304
+ + ++Y +K + PD+ TY +L R
Sbjct: 579 CLERSGRTAEAVDLYAKLKQQGLTPDSITYAVLER 613
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 100/235 (42%), Gaps = 15/235 (6%)
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL 212
M K+ Y ++ ++ + A LF N H K Y ++L + +G + L
Sbjct: 358 MNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESLCSSGKIAEAIDL 417
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
E I+ + YNT+ + GRL V H+ ++++K P++FTYN LI+ Y
Sbjct: 418 LNRFH-EKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYG 476
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
A +I++ ++ PD +Y L+ +G++ ++ ++ +
Sbjct: 477 RAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVV 536
Query: 333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL---NVLLIRVYAKEDCLE 384
+I + K TD+++ +L + + P L N+LL DCLE
Sbjct: 537 TYSTLIECFGK---TDKVEMACSLFDEMIAEGCSPNLVTYNILL-------DCLE 581
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I +N LL A + DK +F D+K+ + P TY +I + G+ D A F
Sbjct: 223 IFAFNMLLDALAKDQKVDKAYKVFEDMKRR-HCEPDTFTYTIMIRMTGKAGKTDESLALF 281
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
Q + + + N+ YN +I M K ++ M P+ TY +LL
Sbjct: 282 QAMLEKGFTLNLIAYNTMIEALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAE 341
Query: 310 GNLPRMEKIYELVKHHVD 327
G L +++ I E+ K +++
Sbjct: 342 GQLNKLDNIVEMSKKYMN 359
>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
Length = 646
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 2/139 (1%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
GR V+ A +F E N K I ++N+L+ NG D+ F+++++E +SP
Sbjct: 483 GRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEG-LSPD 541
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+VTY+TLI FG+ V+ F E+ SPN+ TYN L+ + + ++Y
Sbjct: 542 VVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYA 601
Query: 286 MMKAGPVMPDTNTYLLLLR 304
+K + PD+ TY +L R
Sbjct: 602 KLKQQGLTPDSITYAVLER 620
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E IS V YNT++S G+L + ++++K SP++F+YN LI+ + A G
Sbjct: 430 EKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRA---G 486
Query: 279 KVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+VEE I++ ++ PD ++ L+ +G++
Sbjct: 487 RVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDI 523
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R NN + A +++ E + K I YN LL A + D+ +F+D+K++ + P
Sbjct: 237 RSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRK-HCEPDE 295
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TY +I + G++ D FQE+ + +PN+ YN +I M K ++
Sbjct: 296 YTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSK 355
Query: 287 M 287
M
Sbjct: 356 M 356
>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g51965, mitochondrial; Flags: Precursor
gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
thaliana]
gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
Length = 650
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 2/139 (1%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
GR+ VD A ++F E K I +YN+L+ NG D+ F++++ E ++P
Sbjct: 488 GRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ-EKGLNPD 546
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+VTY+TL+ FG+ V+ + F+E+ PN+ TYN L+ + ++Y
Sbjct: 547 VVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYS 606
Query: 286 MMKAGPVMPDTNTYLLLLR 304
MK + PD+ TY +L R
Sbjct: 607 KMKQQGLTPDSITYTVLER 625
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 80/160 (50%), Gaps = 2/160 (1%)
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNGLSDKCQSL 212
MT+ Y+ ++ ++ +V A LF + + +K +Y ++L + G + + +
Sbjct: 370 MTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEM 429
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
+ ++ ++ +++ YNT+ S G+L + H+ F+++K SP++FTYN LIA +
Sbjct: 430 LSKIHEKGVVTDTMM-YNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFG 488
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ I++ ++ PD +Y L+ +G++
Sbjct: 489 RVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDV 528
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 127/323 (39%), Gaps = 17/323 (5%)
Query: 175 AADLFAEAA-NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A D++ E H I YN LL A + +K +F D+KK + TY +I
Sbjct: 222 AFDVYCEIRRGGHKLDIFAYNMLLDALAKD---EKACQVFEDMKKR-HCRRDEYTYTIMI 277
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
GR+ D F E+ L+ NV YN L+ M K +++ M
Sbjct: 278 RTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCR 337
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-DGKEFPLIRAMICAYSKCSVTDRIKK 352
P+ TY LLL G L R++ + E+ K ++ G L+R + SK +
Sbjct: 338 PNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQGIYSYLVRTL----SKLGHVSEAHR 393
Query: 353 IEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS 412
+ M P K R +L + +E +E + K VT + + S+
Sbjct: 394 LFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIE--MLSKIHEKGVVTDTMMYNTVFSA 451
Query: 413 YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS 472
+ + + + ++ + G Y+ + + V+E ++ +E+E + DC
Sbjct: 452 LGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELE--RSDC- 508
Query: 473 KKTFWIMYYAYATC-GQRRKVNQ 494
K I Y + C G+ V++
Sbjct: 509 -KPDIISYNSLINCLGKNGDVDE 530
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 134/320 (41%), Gaps = 33/320 (10%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I+ GRI D A LF E + L + YN L+ + DK +F +
Sbjct: 273 YTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRM- 331
Query: 218 KEANISPSIVTYNTLISVF---GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
E P+ TY+ L+++ G+L+ +D EI ++ + Y+YL+ T
Sbjct: 332 VETGCRPNEYTYSLLLNLLVAEGQLVRLD----GVVEISKRYMTQGI--YSYLVR---TL 382
Query: 275 WMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
G V E +++ M + PV + ++Y+ +L +G +E I L K H G
Sbjct: 383 SKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGK--TIEAIEMLSKIHEKG--- 437
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPE-KEYRPWLNV----LLIRVYAKEDCLEEM 386
++ + + S ++K+I + L + K+ P ++ +LI + + + E+
Sbjct: 438 -VVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGR---VGEV 493
Query: 387 EKSIN--DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSK 444
+++IN + E + +++ + VD+ K + G Y +
Sbjct: 494 DEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTL 553
Query: 445 MVMYASQRRVEEMESVLKEM 464
M + RVE S+ +EM
Sbjct: 554 MECFGKTERVEMAYSLFEEM 573
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
D+ +S+ + K +N+ +I T N LI FG + ++ + +K +L N FTY
Sbjct: 153 DRVRSILDSMVK-SNVHGNISTVNILIGFFGN---TEDLQMCLRLVKKWDLKMNSFTYKC 208
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
L+ Y+ + + K ++Y ++ G D Y +LL A
Sbjct: 209 LLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDALA 249
>gi|255660926|gb|ACU25632.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 484
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP ++TYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVITYNTMINGYCRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGKNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E+V ++ + + +I ++ K D + +A++RL
Sbjct: 271 MSEARSILKEMVDKYIAPTDNSIFMRLISSHCKVGNLDAAADVLKAMIRL 320
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G+ NV++A DLF + ++ + +Y L+ G D F +LK + P
Sbjct: 939 GKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKL-TGLDPD 997
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
V+YN +I+ G+ ++ + F E+K+ +SP ++TYN LI + A M + ++++
Sbjct: 998 TVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFE 1057
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
++ + P+ TY L+RG++ SGN R +++
Sbjct: 1058 ELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFK 1092
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 83/412 (20%), Positives = 166/412 (40%), Gaps = 16/412 (3%)
Query: 96 VDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMT 155
V+D+ VF ++ ++ + R+ N Y + + R A L + RQAG+ +
Sbjct: 138 VEDMAFVFDLMQKQ---VINRNPNTYLTIFKALSIKGGIRQAPFALG-KMRQAGF--VLN 191
Query: 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFR 214
Y I F + A ++ ++ LK ++ TY+AL+ A + L
Sbjct: 192 AYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLE 251
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
+++ + P+I TY I V GR +D + ++D P+V TY LI A
Sbjct: 252 EMET-LGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAA 310
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
K +E+Y M+A PD TY+ L+ + + G+L +++ + ++ +
Sbjct: 311 GKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTY 370
Query: 335 RAMICAYSKCSVTDRIKKIEALMR---LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN 391
++ A K D+ + +MR ++P L L+ + ++ LE +
Sbjct: 371 TILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALE-----LF 425
Query: 392 DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451
+ E T + Y + +K + ++ + G + ++ + A
Sbjct: 426 NNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEM 485
Query: 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
R+ E + + ++ N + T+ +M Y+ GQ K ++L M G
Sbjct: 486 GRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEG 537
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 201 MYNGLS-----DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
M NGL ++ SLF ++K ISP + TYN LI FG +VD F+E++
Sbjct: 1004 MINGLGKSRRLEEALSLFSEMKNRG-ISPELYTYNALILHFGNAGMVDQAGKMFEELQFM 1062
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
L PNVFTYN LI G+ + + +++ M P+ T+
Sbjct: 1063 GLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTF 1106
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 86/213 (40%), Gaps = 7/213 (3%)
Query: 93 LANVDDLDKVFRVLDEKGSCLFRRHSNGYA-FVELMKQLGSRPRLALEVLNWRRRQAGYG 151
L N+ LD+ + + S + Y F++ +LG P AL+ +++
Sbjct: 412 LLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGD-PEKALDTFEKMKKRGIMP 470
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQ 210
+ + GRI A D+F + N L TYN ++ Y G DK
Sbjct: 471 SIAACNASLYSLAEMGRIRE---AKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKAT 527
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
L ++ E P I+ N+LI + VD F +KD L+P V TYN LI G
Sbjct: 528 KLLTEMLSEG-CEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITG 586
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
K +++ MK P+T T+ LL
Sbjct: 587 LGKEGKLLKALDLFGSMKESGCPPNTVTFNALL 619
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 184 NKHLKTIGT------YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
+K K++GT YN L+ + +++ LF ++K A P+I TYN L+ G
Sbjct: 776 DKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKN-AGCCPNIFTYNLLLDAHG 834
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN 297
+ +D + + E+ PN+ T+N +I+ + + K ++Y + +G P
Sbjct: 835 KSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPC 894
Query: 298 TYLLLLRGYAHSGNLPRMEKIYE 320
TY L+ G +G KI+E
Sbjct: 895 TYGPLIGGLLKAGRSEEAMKIFE 917
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 122/305 (40%), Gaps = 16/305 (5%)
Query: 166 AGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
AGR VD A +F + L T+ TYN L+ G K LF +K E+ P
Sbjct: 555 AGR---VDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMK-ESGCPP 610
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
+ VT+N L+ + VD F + N SP+V TYN +I G + G Y
Sbjct: 611 NTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFY 670
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI--RAMICAYS 342
MK + PD T LL G G + KI H + + M C
Sbjct: 671 HQMKKF-LSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECILI 729
Query: 343 KCSVTDRIKKIEALM-RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT 401
+ + + I E L+ I + + L + LIRV K+ + +K + + +
Sbjct: 730 EAEIEEAISFAEGLVCNSICQDDN---LILPLIRVLCKQKKALDAKKLFDKFTKSLGTHP 786
Query: 402 TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVM--YASQRRVEEMES 459
T C++ CN + ++AG C +++ +++ + +R++E+
Sbjct: 787 TPESYNCLMDGLLGCNITEAALKLFVEMKNAGC--CPNIFTYNLLLDAHGKSKRIDELFE 844
Query: 460 VLKEM 464
+ EM
Sbjct: 845 LYNEM 849
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 73/166 (43%), Gaps = 8/166 (4%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKC 209
GT T E Y + N + A LF E N I TYN LL A+ G S +
Sbjct: 783 GTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAH---GKSKRI 839
Query: 210 QSLFRDLKKEA---NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
LF +L E P+I+T+N +IS + ++ + EI + SP TY
Sbjct: 840 DELF-ELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGP 898
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
LI G + A + +I++ M P+ Y +L+ G+ +GN+
Sbjct: 899 LIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNV 944
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 21/243 (8%)
Query: 91 ELLANVDDLDKVFRVLDEKGSCLFRRHS---NGYAFVELMKQLGSRPRL--ALEVLNWRR 145
E L +D+ F +LD + R N + + L+ L + RL ALE+ N
Sbjct: 375 EALCKSGKVDQAFDMLD-----VMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFN--- 426
Query: 146 RQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNG 204
G T Y I + G++ + + A D F + + + +I NA L + G
Sbjct: 427 NMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMG 486
Query: 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264
+ + +F D+ +SP VTYN ++ + + +D E+ P++
Sbjct: 487 RIREAKDIFNDIHN-CGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVV 545
Query: 265 NYLIAGYMTAWMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321
N LI T + G+V+E +QM +K + P TY +L+ G G L + ++
Sbjct: 546 NSLID---TLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGS 602
Query: 322 VKH 324
+K
Sbjct: 603 MKE 605
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 8/161 (4%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G+ +D +L+ E + K I T+N ++ A + + +K L+ ++ + SP+
Sbjct: 834 GKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEII-SGDFSPT 892
Query: 226 IVTYNTLISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
TY LI G LL E A F+E+ D PN YN LI G+ A +
Sbjct: 893 PCTYGPLI---GGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACD 949
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+++ M + PD +Y +L+ +G + +E +K
Sbjct: 950 LFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELK 990
>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
Length = 633
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 2/160 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I GR+ VD A++LF E + K + TYN+++ NG D+ LF+D++
Sbjct: 463 YNIMISSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQ 522
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E P + TY+ LI FG+ VD + F E+ PN+ TYN L+
Sbjct: 523 -EKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKT 581
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
+ + Y+ +K + PD+ TY +L R + S R+ K
Sbjct: 582 TEAHKFYETLKQQGLTPDSITYSILERLESRSQRTVRIRK 621
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Query: 175 AADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A DL K + T +G YN + A SL+ D + + P + TYN +I
Sbjct: 409 AIDLLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLY-DTMRANGVVPDVFTYNIMI 467
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
S FGR+ LVD F+E++D + P+V TYN +I + +++ M+
Sbjct: 468 SSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYD 527
Query: 294 PDTNTYLLLLRGYAHS 309
PD TY +L+ + S
Sbjct: 528 PDVFTYSILIECFGKS 543
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 52/102 (50%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E I+ + YN + S G+L V M + + ++ + + P+VFTYN +I+ + +
Sbjct: 418 EKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRANGVVPDVFTYNIMISSFGRVGLVD 477
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
K E+++ M+ G PD TY ++ +G+L +++
Sbjct: 478 KASELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFK 519
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 86/421 (20%), Positives = 164/421 (38%), Gaps = 26/421 (6%)
Query: 89 RDELLANVDDLDKVFRVLDEKGSCL-----FRRHSNGYAFVELMK-QLGSRPRL-ALEVL 141
RD + N+ ++ + + E G CL + NGY + L++ L SR EV
Sbjct: 147 RDGVPGNISTVNLLVGMGVEVGRCLDLASKWGLRLNGYTYKCLVQAHLRSREVWKGFEVY 206
Query: 142 NWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAY 200
RR+ G + Y + + VD A +F + + TY L+
Sbjct: 207 EKMRRK---GYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPDAYTYTILIRMS 263
Query: 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN 260
G + K SL ++ E + +++ YNT+I G+ +VD ++ +S+ PN
Sbjct: 264 GKAGKTTKFVSLLEEMVSEGCVL-NLIAYNTVIEALGKNKMVDEAIFMLSKMIESDCRPN 322
Query: 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY- 319
FTY+ ++ T ++ EI + P Y L++ SG+ ++
Sbjct: 323 QFTYSIMLDVLSTGGQLHRLNEILDICSGCLNRP---VYSYLIKALCKSGHASEAHSVFC 379
Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVY 377
+ H G + + + + C+ + I+ L+ ++PEK + + ++
Sbjct: 380 RMWNSHEKGDRYAFVSML---EALCNAEKTTEAID-LLHMMPEKGITTDVGMYNMIFSAL 435
Query: 378 AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC 437
K + M S+ D V V ++SS+ R VDK + + E +
Sbjct: 436 GKLKQVSFM-SSLYDTMRANGVVPDVFTYNIMISSFGRVGLVDKASELFEEMEDGSCKPD 494
Query: 438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLG 497
Y+S + ++E + K+M+ D T+ I+ + G+ KV+
Sbjct: 495 VVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECF---GKSNKVDMACS 551
Query: 498 L 498
L
Sbjct: 552 L 552
>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
Length = 825
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 130/334 (38%), Gaps = 58/334 (17%)
Query: 52 APATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGS 111
+P H F RL S TL DAR L DELL D R L+E S
Sbjct: 106 SPPAHAAFRE--RLRSGTLGPDDAR----------HLFDELLLR-RDAPAPARGLNELLS 152
Query: 112 CLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN 171
L R + P LA+E+ R A T Y I R
Sbjct: 153 ALARAPPSA--------ACRDVPALAVELFKRMDRCACPEAAPTIYTYNILINCYRRARR 204
Query: 172 VDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
DL +F L + +YNAL+ + G DK LF ++ E I P++VTY+
Sbjct: 205 PDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKME-EQGIMPNVVTYS 263
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
+LI+ + +D E +++ + + PN TYN LI GY T+ MW + +++ M +
Sbjct: 264 SLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSS 323
Query: 291 PVMPDTN-----------------------------------TYLLLLRGYAHSGNLPRM 315
++PD +Y LL GYA +G + M
Sbjct: 324 LLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGM 383
Query: 316 EKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
+ ++ ++ + + +I AY++ + D+
Sbjct: 384 DNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDK 417
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+N L+ AY G+ DK +F D+ K+ ++P I+T++T+IS F RL +D F
Sbjct: 401 VFNTLINAYARLGMMDKSLLMFEDMTKQG-VNPDIITFSTVISAFCRLGRLDDAMEKFNH 459
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ D+ + P+ Y+ LI G K +E I M+ G P + ++ G
Sbjct: 460 MIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEG 519
Query: 311 NLPRMEKIYELVKH 324
+ + + +L+ H
Sbjct: 520 RVAEGKDVVDLIIH 533
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 9/205 (4%)
Query: 167 GRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
GRI A D+F K K + +Y ALL Y G +LF + E + P
Sbjct: 343 GRIKE---ARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEG-VVPD 398
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+NTLI+ + RL ++D F+++ ++P++ T++ +I+ + E +
Sbjct: 399 RHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFN 458
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD-GKEFPLIRAMICAYSKC 344
M V PDT Y L++G + +L K EL+ + G P I+ +
Sbjct: 459 HMIDTGVPPDTAVYSCLIQGQCNRRDL---VKAKELISDMLSKGIPPPCIKFFTSIINNL 515
Query: 345 SVTDRIKKIEALMRLIPEKEYRPWL 369
R+ + + ++ LI RP L
Sbjct: 516 CKEGRVAEGKDVVDLIIHTGQRPNL 540
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/357 (16%), Positives = 132/357 (36%), Gaps = 37/357 (10%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ Y +G+ + +F+++ + P + N+ ++ + + F
Sbjct: 296 TYNCLIHGYSTSGMWKESVRVFKEMSSSL-LVPDVGNCNSFMTALCKHGRIKEARDIFDS 354
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG- 310
+ P+V +Y L+ GY TA ++ ++ +M V+PD + + L+ YA G
Sbjct: 355 MVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGM 414
Query: 311 -------------------------------NLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
L R++ E H +D P C
Sbjct: 415 MDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSC 474
Query: 340 -AYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEH 396
+C+ D +K E + ++ + P + +I KE + E K + D H
Sbjct: 475 LIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAE-GKDVVDLIIH 533
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
+ +V Y + + + ES G Y++ + Y R+++
Sbjct: 534 TGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDD 593
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
++ ++M + ++ + ++ I+ + + ++ M ++G V ++ + +
Sbjct: 594 ALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYAT 650
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 2/142 (1%)
Query: 174 LAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
+A ++F E + +I TY +LG N +D+ L L N+ I+T+N +
Sbjct: 628 VAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFS-MNVKFDILTFNIV 686
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I ++ + F I L P + TY +I + + + ++ M+
Sbjct: 687 IRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSC 746
Query: 293 MPDTNTYLLLLRGYAHSGNLPR 314
PD+ ++R + G + +
Sbjct: 747 TPDSRILNEIIRMLLNKGEVAK 768
>gi|356534408|ref|XP_003535747.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35130-like [Glycine max]
Length = 357
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN L+ AY G D +++F+D+K+ I+P++ ++ L S + ++ V+ E +
Sbjct: 154 SYNILVDAYGKAGFQDDAEAVFKDMKR-VGITPTMKSHMVLQSAYSKMGNVNKCEEILNQ 212
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ S L N + ++ Y +GK+EE+ ++M+ G + D +TY +L+ Y +G
Sbjct: 213 MCKSGLKLNTYVLKSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGX 272
Query: 312 LPRMEKIYELV 322
+ RME ++L+
Sbjct: 273 IERMEDFFQLL 283
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 123/312 (39%), Gaps = 34/312 (10%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YNA + M G SDK + +F+ +KK+A S + TY LI+++G+ F E+
Sbjct: 9 YNAYINGLMKGGNSDKAEEIFKRMKKDACKS-TTETYTMLINLYGKAGKSFMALILFHEM 67
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
PN+ TY L+ ++ + K EE+++ M+ + PD Y L+ Y S
Sbjct: 68 TTHKCKPNICTYTALVNAFVREGLCEKAEEVFEQMQEAGLEPDVYAYNALMETYKFSSPF 127
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL 372
R Y + F L++ M C + S +
Sbjct: 128 SRAGYPYGAAEI------FSLMQHMGCEPDRASYN------------------------I 157
Query: 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
L+ Y K ++ E D + +T T++ + S+Y + V+K + +
Sbjct: 158 LVDAYGKAGFQDDAEAVFKDM--KRVGITPTMKSHMVLQSAYSKMGNVNKCEEILNQMCK 215
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
+G +L + S + +Y + +ME VL+ ME T+ I+ Y G +
Sbjct: 216 SGLKLNTYVLKSMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAGXIER 275
Query: 492 VNQVLGLMCKNG 503
+ L+ G
Sbjct: 276 MEDFFQLLPSKG 287
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 132/304 (43%), Gaps = 19/304 (6%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y G+ G N D A ++F K T TY L+ Y G S LF ++
Sbjct: 12 YINGLMKGG---NSDKAEEIFKRMKKDACKSTTETYTMLINLYGKAGKSFMALILFHEMT 68
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM----- 272
P+I TY L++ F R L + E F++++++ L P+V+ YN L+ Y
Sbjct: 69 TH-KCKPNICTYTALVNAFVREGLCEKAEEVFEQMQEAGLEPDVYAYNALMETYKFSSPF 127
Query: 273 --TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+ +G EI+ +M+ PD +Y +L+ Y +G E +++ +K
Sbjct: 128 SRAGYPYGAA-EIFSLMQHMGCEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRV---GI 183
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEK 388
P +++ + S S + K E ++ + + + VL ++ +Y + +ME+
Sbjct: 184 TPTMKSHMVLQSAYSKMGNVNKCEEILNQMCKSGLKLNTYVLKSMLNLYGRLGQFGKMEE 243
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
+ E + V + +++ Y + ++++ +F + S G + + S+M Y
Sbjct: 244 VLR-VMEKGSYVADISTYNILINRYGQAGXIERMEDFFQLLPSKGLKPDVVTWTSRMGAY 302
Query: 449 ASQR 452
+ ++
Sbjct: 303 SXKK 306
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 77/337 (22%), Positives = 135/337 (40%), Gaps = 68/337 (20%)
Query: 106 LDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKF 165
++ + ++ + NG LMK G A E+ ++ A T E YT I
Sbjct: 1 MNNPSAVVYNAYING-----LMK--GGNSDKAEEIFKRMKKDA---CKSTTETYTMLINL 50
Query: 166 AGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
G+ +A LF E K I TY AL+ A++ GL +K + +F ++ EA + P
Sbjct: 51 YGKAGKSFMALILFHEMTTHKCKPNICTYTALVNAFVREGLCEKAEEVFEQMQ-EAGLEP 109
Query: 225 SI-----------------------------------------VTYNTLISVFGRLLLVD 243
+ +YN L+ +G+ D
Sbjct: 110 DVYAYNALMETYKFSSPFSRAGYPYGAAEIFSLMQHMGCEPDRASYNILVDAYGKAGFQD 169
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLL- 301
EA F+++K ++P + ++ L + Y K EEI QM K+G + NTY+L
Sbjct: 170 DAEAVFKDMKRVGITPTMKSHMVLQSAYSKMGNVNKCEEILNQMCKSGLKL---NTYVLK 226
Query: 302 -LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI 360
+L Y G +ME++ +++ + +I Y + I+++E +L+
Sbjct: 227 SMLNLYGRLGQFGKMEEVLRVMEKGSYVADISTYNILINRYGQAG---XIERMEDFFQLL 283
Query: 361 PEKEYRPWLNVLLIRVYAKE------DCLEEMEKSIN 391
P K +P + R+ A CLE E++I+
Sbjct: 284 PSKGLKPDVVTWTSRMGAYSXKKLYLKCLEIFEETID 320
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 97/250 (38%), Gaps = 39/250 (15%)
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG-NLPRME 316
+P+ YN I G M K EEI++ MK T TY +L+ Y +G + +
Sbjct: 3 NPSAVVYNAYINGLMKGGNSDKAEEIFKRMKKDACKSTTETYTMLINLYGKAGKSFMALI 62
Query: 317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL-IPEKEYRPWLNVLLIR 375
+E+ H + IC Y+ + A +R + EK
Sbjct: 63 LFHEMTTHKC--------KPNICTYTAL--------VNAFVREGLCEK------------ 94
Query: 376 VYAKEDCLEEMEKSI--NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
E+ E+M+++ D + + + T + S + R A + G
Sbjct: 95 ---AEEVFEQMQEAGLEPDVYAYNALMETYKF----SSPFSRAGYPYGAAEIFSLMQHMG 147
Query: 434 WRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVN 493
R+ Y+ + Y ++ E+V K+M+ I + K+ ++ AY+ G K
Sbjct: 148 CEPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLQSAYSKMGNVNKCE 207
Query: 494 QVLGLMCKNG 503
++L MCK+G
Sbjct: 208 EILNQMCKSG 217
>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
Length = 457
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 3/195 (1%)
Query: 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALL 197
E ++ R G P Y I + ++ A LF E K + T+ TYN+LL
Sbjct: 140 EAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLL 199
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
+ G + QSLF+D+ ++ + P+I T+N L+ F ++ + F E++
Sbjct: 200 SGFSRKGEFGRVQSLFKDMLRQGCV-PNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGC 258
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
P+V +YN LI G + + + + + M V PD +Y +L+ GY+ SG L K
Sbjct: 259 PPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIK 318
Query: 318 I-YELVKHHVDGKEF 331
+ YE+ K ++ F
Sbjct: 319 LFYEIPKSGLEPDAF 333
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 130/321 (40%), Gaps = 42/321 (13%)
Query: 51 CAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKG 110
C P T+T + L+R L + + +AR VFR + +G
Sbjct: 48 CVPNTYT-YGYLLRSLCQAQRFEEAR------------------------SVFRGMAAQG 82
Query: 111 SCLFRRHSNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR 168
N +++ L+ L G + A E+LN +T G+ G+
Sbjct: 83 C-----SPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137
Query: 169 INNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+ A DLF+ + G YN L+ + G + LF ++ ++ I P++
Sbjct: 138 LKE---AVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCI-PTVF 193
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TYN+L+S F R +++ F+++ PN+FT+N L+ G+ + ++ M
Sbjct: 194 TYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEM 253
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSV 346
++ PD +Y L+RG G +++ E+++ V G + +I YSK
Sbjct: 254 RSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGV-GPDIVSYNILIDGYSKSGA 312
Query: 347 TDRIKKIEALMRLIPEKEYRP 367
D K L IP+ P
Sbjct: 313 LDHAIK---LFYEIPKSGLEP 330
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 4/143 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN L+ G + Q L R++ + + + P IV+YN LI + + +DH F E
Sbjct: 264 SYNTLIRGMCSKGKPHEAQRLLREMIR-SGVGPDIVSYNILIDGYSKSGALDHAIKLFYE 322
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
I S L P+ F+Y+ +I A G +++ M A PD + L+ G
Sbjct: 323 IPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRG-- 380
Query: 312 LPRMEKIYELVKHHVDGKEFPLI 334
R+ + EL + V + PLI
Sbjct: 381 -ERLTESCELFQAMVKFECVPLI 402
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 16/145 (11%)
Query: 191 GTYNALLGA------YMYNGL---------SDKCQSLFRDLKKEANISPSIVTYNTLISV 235
GTYN +L A Y Y L ++ +S+FR + + SP++ +Y+ LI+
Sbjct: 38 GTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQG-CSPNVFSYSILIAG 96
Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
R VD E+ D PNV TY L++G + +++ M PD
Sbjct: 97 LCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPD 156
Query: 296 TNTYLLLLRGYAHSGNLPRMEKIYE 320
Y +L+ G++ G++ +++E
Sbjct: 157 GVVYNVLIDGFSKKGDMGEAYRLFE 181
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 96/222 (43%), Gaps = 12/222 (5%)
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+ F+ + + + ++YN L+ V + DH+ + ++ + PN +TY YL+
Sbjct: 2 AFFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRS 61
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
A + + +++ M A P+ +Y +L+ G ++++ EL+ +DG
Sbjct: 62 LCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRG---QKVDEAAELLNEMIDGGH 118
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR--PWLNV---LLIRVYAKEDCLEE 385
P + + S S ++ K++ + L YR P V +LI ++K+ + E
Sbjct: 119 QPNV---VTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGE 175
Query: 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
+ + E K + TV ++S + R ++ + K
Sbjct: 176 AYRLFEEMLE-KGCIPTVFTYNSLLSGFSRKGEFGRVQSLFK 216
>gi|224119780|ref|XP_002331159.1| predicted protein [Populus trichocarpa]
gi|118487894|gb|ABK95769.1| unknown [Populus trichocarpa]
gi|222873242|gb|EEF10373.1| predicted protein [Populus trichocarpa]
Length = 490
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 115/253 (45%), Gaps = 16/253 (6%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
K + TY ALL Y ++++ ++L +K E N+ S ++YN+L++++ ++ + + A
Sbjct: 121 KNLRTYGALLNCYCKELMTEEAEALIEKMK-ELNLGLSSMSYNSLMTLYTKVGQPERIPA 179
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK-AGPVMPDTNTYLLLLRGY 306
QE+K N+ P+ +TYN + VE + + MK G V + TY L Y
Sbjct: 180 IIQEMKADNVMPDSYTYNVWMRALAAVNDISGVERVIEEMKRDGRVAANWTTYSNLASIY 239
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL-IPEKEY 365
+G + EK + ++ K+ + +I Y + + +I +RL P+
Sbjct: 240 VDAGYFDKAEKALKELEKINANKDLFAFQFLITLYGRTGKLIEVYRIWRSLRLAFPKTAN 299
Query: 366 RPWLNVLLIRVYAK-----EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420
+LN++ + V K E C E +E S +R+ ++S+Y + VD
Sbjct: 300 ISYLNMIQVLVNLKDVPGAEKCFRE--------WESGCSTYDIRVANVVISAYAKEGLVD 351
Query: 421 KLANFVKRAESAG 433
K +RA G
Sbjct: 352 KAEELKERARRRG 364
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 93/408 (22%), Positives = 161/408 (39%), Gaps = 30/408 (7%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C + N Y +M Q G + R + Y G+ AGRI
Sbjct: 238 GHCRNKGVDNAYEVFLIMPQKGCQ-----------RNEVSY------TNLIHGLCEAGRI 280
Query: 170 NNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
N A LFA+ + T+ TY L+ A +G + +LF ++K E P++ T
Sbjct: 281 NE---ALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMK-EKGCEPNVHT 336
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y LI + +D E+ + L P+V TYN LI GY M EI +M+
Sbjct: 337 YTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLME 396
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP-LIRAMICAYSKCSVT 347
+ P+T TY L+ G ++ K L+ ++ K P LI + +C V
Sbjct: 397 SNSCGPNTRTYNELICGLCKK---RKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVN 453
Query: 348 DRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRI 405
D ++ L+ L+ E P W + I KE +EE ++ D+ + K I
Sbjct: 454 D-LESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEE-AGTLFDSVKAKGVKANEVI 511
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
++ Y + +D + ++R + Y+ + +++++E S++ +M
Sbjct: 512 YTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKML 571
Query: 466 NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
+ + T+ I+ G +V M GY V + +
Sbjct: 572 TMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTA 619
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 92/413 (22%), Positives = 157/413 (38%), Gaps = 18/413 (4%)
Query: 96 VDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMT 155
+++ K+F + E C R + L+ L R +E LN G
Sbjct: 280 INEALKLFADMTEDNCCPTVR-----TYTVLIYALSGSGR-KVEALNLFNEMKEKGCEPN 333
Query: 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFR 214
YT I + N +D A + +E + K L ++ TYNAL+ Y G+ D +
Sbjct: 334 VHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEIL- 392
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
DL + + P+ TYN LI + V A ++ + LSP++ TYN LI G
Sbjct: 393 DLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKV 452
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
+ +M ++PD TY + + G + +++ VK +
Sbjct: 453 NDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIY 512
Query: 335 RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSIND 392
A+I Y K +I +L+ + P + +LI KE ++E +
Sbjct: 513 TALIDGYCK---VGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAK 569
Query: 393 AFEH--KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450
K +V T I+ + + A D S G++ Y + + Y S
Sbjct: 570 MLTMGVKPTVVTYTIL---IGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFS 626
Query: 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
Q +EE++ V+ +M I T+ ++ YA G + L M G
Sbjct: 627 QGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTG 679
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 141/333 (42%), Gaps = 47/333 (14%)
Query: 212 LFRDLKK--EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+FR + E P++ YNT++ + LL+D M+ + E+ ++ +SPN++T+N ++
Sbjct: 143 VFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVN 202
Query: 270 GYMTAWMWGKVE-EIY--QMMKAGPVMPDTNTYLLLLRGYAHSG---------------- 310
GY + VE E+Y ++++AG + PDT TY L+ G+ +
Sbjct: 203 GYCK--IGNVVEAELYASKIVQAG-LHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKG 259
Query: 311 -------------NLPRMEKIYELVKHHVDGKE---FPLIRAMICAYSKCSVTDRIKKIE 354
L +I E +K D E P +R S + R K+E
Sbjct: 260 CQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGR--KVE 317
Query: 355 A--LMRLIPEKEYRPWLN--VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV 410
A L + EK P ++ +LI KE+ ++E K +++ E K + +V ++
Sbjct: 318 ALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSE-KGLIPSVVTYNALI 376
Query: 411 SSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID 470
Y + +D + ES Y+ + +R+V + ++L +M K+
Sbjct: 377 DGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLS 436
Query: 471 CSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
S T+ + + ++L LM +NG
Sbjct: 437 PSLITYNSLIHGQCKVNDLESAYRLLSLMNENG 469
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 85/410 (20%), Positives = 158/410 (38%), Gaps = 41/410 (10%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRP-----RLALEVL--NWRRRQAGY--------GTPM 154
G C + Y + LM + G P + ++ L R +AG G
Sbjct: 448 GQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKA 507
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLF 213
+ YT I ++ +D+A L N L TYN L+ + SL
Sbjct: 508 NEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLV 567
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+ + P++VTY LI + DH F + P+V TY + Y +
Sbjct: 568 AKMLT-MGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFS 626
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
M +V+++ M ++PD TY +L+ GYA G + ++ +K VD P
Sbjct: 627 QGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLG---LTHRAFDFLKCMVDTGCKPS 683
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA 393
+ + S +R+K+ + + + + + E L+ EK +
Sbjct: 684 LYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMV--- 740
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS------KMVM 447
EH ++ V I +++ + + +++ V + G +Y+S K+ +
Sbjct: 741 -EHGCTI-DVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGV 798
Query: 448 YA-SQRRVEEM--ESVLKEMENYK-------IDCSKKTFWIMYYAYATCG 487
YA + R V+ M +L +E+YK I+ S + +++ +CG
Sbjct: 799 YAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCG 848
>gi|168012907|ref|XP_001759143.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689842|gb|EDQ76212.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 103/208 (49%), Gaps = 12/208 (5%)
Query: 123 FVELMKQLGSRPR--LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
++ L++ L ++ + L LEV W +RQ Y Y K I +G+ ++ +A LF
Sbjct: 81 WLSLLEGLANQSKWALTLEVFRWMQRQKWYNH--DDGFYAKLIVISGKARDLRMAVWLFN 138
Query: 181 EAANKHLKTIGT-YNALLGAYMYN-----GLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234
E + + YNAL+ AY+++ G + LF +K++ P++VTYN L+
Sbjct: 139 EVKRSGSRPDSSLYNALITAYLHSRDKGRGF-EAAMKLFEKMKQKPKCQPNLVTYNILLR 197
Query: 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE-EIYQMMKAGPVM 293
+L V ++ F+E++ + + P++ TYN +I Y A + ++E ++ M +
Sbjct: 198 ASAQLGDVVQVDRFFKEMEAAKIYPDLVTYNGVIGAYAEAGDYVQMEMTLFVMRIQKHIK 257
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYEL 321
PD T L+ Y + +ME++ L
Sbjct: 258 PDNVTSNTLIGAYGRGKDFVKMEQVVSL 285
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Query: 182 AANKHLKTIGTYNALLGAYM-YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
+ +KH + TYN L+ +Y + + S R +EA+ P+ ++ L+ FG +
Sbjct: 296 SKSKHRPDLKTYNLLMSSYARAQDMENMLWSFSR--MEEASFKPNFRSFEILMYGFGGVG 353
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
+ M F ++ ++++ P T N +I+ Y + + EE+ + + P T++YL
Sbjct: 354 DFEKMRECFHQMLEASIKPQTSTLNTMISAYCKHNFFEEAEELLKEALEWQIHPRTSSYL 413
Query: 301 LLLRGYAHSGNLPRMEKIYE 320
++LR YA L ME++ E
Sbjct: 414 IILRAYARDNRLNDMERLIE 433
Score = 42.0 bits (97), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 27/195 (13%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVF------GRLLLVDHMEAA---FQEIKDS-NLSPNV 261
LF ++K+ + P YN LI+ + GR EAA F+++K PN+
Sbjct: 136 LFNEVKRSGS-RPDSSLYNALITAYLHSRDKGR-----GFEAAMKLFEKMKQKPKCQPNL 189
Query: 262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321
TYN L+ +V+ ++ M+A + PD TY ++ YA +G+ +ME +
Sbjct: 190 VTYNILLRASAQLGDVVQVDRFFKEMEAAKIYPDLVTYNGVIGAYAEAGDYVQMEMTLFV 249
Query: 322 --VKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI------PEKEYRPWLNV-- 371
++ H+ +I AY + +++++ +L + + ++RP L
Sbjct: 250 MRIQKHIKPDNV-TSNTLIGAYGRGKDFVKMEQVVSLFTAVLKSMTGSKSKHRPDLKTYN 308
Query: 372 LLIRVYAKEDCLEEM 386
LL+ YA+ +E M
Sbjct: 309 LLMSSYARAQDMENM 323
>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/300 (21%), Positives = 126/300 (42%), Gaps = 5/300 (1%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN LL A GL D+ + +FR + E I P I TY+ L+ FG+L ++ +
Sbjct: 10 IVTYNTLLSACARRGLGDEAEMVFRTMN-EGGILPDITTYSYLVETFGKLNRLEKVSELL 68
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E++ P++ +YN L+ + + + +++ M+ +P+ TY +LL Y
Sbjct: 69 KEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRH 128
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G + ++ +K +I + + K++ L + E+ P +
Sbjct: 129 GRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGY---FKEVVTLFHDMVEENVEPNM 185
Query: 370 NVLLIRVYA-KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
++A + L E K I K V + + ++ +Y + ++
Sbjct: 186 ETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNT 245
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
G + Y+S + M+A +E E++L +M + ++ TF + A+ GQ
Sbjct: 246 MNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQ 305
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ I IVTYNTL+S R L D E F+ + + + P++ TY+YL+ +
Sbjct: 2 RHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRL 61
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
KV E+ + M++G PD +Y +LL +A SG++ ++
Sbjct: 62 EKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVF 103
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 82/393 (20%), Positives = 147/393 (37%), Gaps = 59/393 (15%)
Query: 62 LVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGY 121
+ R ++E PD L +T L ++ + ++ + ++ GS F ++
Sbjct: 32 VFRTMNEGGILPDITTYSYLVETFGKLN-----RLEKVSELLKEMESGGS--FPDITSYN 84
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
+E Q GS E + R+ G G Y+ + GR D DLF E
Sbjct: 85 VLLEAHAQSGSIK----EAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDLFLE 140
Query: 182 AANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI------- 233
+ + TYN L+ + G + +LF D+ +E N+ P++ TY LI
Sbjct: 141 MKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEE-NVEPNMETYEGLIFACGKGG 199
Query: 234 ----------------------------SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
+G+ L + AF + + P V TYN
Sbjct: 200 LHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTVETYN 259
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKH 324
LI + ++ + E I M V + +T+ ++ + G K Y E+ K
Sbjct: 260 SLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKA 319
Query: 325 HVDGKEFPLIRAMICAYSKCSVT----DRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKE 380
D E L A++ Y + ++ +I+AL L Y +++ VYAK
Sbjct: 320 RCDPDEQTL-EAVLSVYCFAGLVEESEEQFGEIKALGILPSVMCY-----CMMLAVYAKA 373
Query: 381 DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY 413
D ++ + +++ F ++ S I + I Y
Sbjct: 374 DRWDDAHQLLDEMFTNRVSNIHQVIGQMIRGDY 406
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + ++ TYN L++ + + E +++ M G ++PD TY L+ + G
Sbjct: 1 MRHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETF---GK 57
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
L R+EK+ EL+K G FP I + + + IK+ + R
Sbjct: 58 LNRLEKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFR 104
>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Brachypodium distachyon]
Length = 637
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 5/216 (2%)
Query: 113 LFRRHSNGY--AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN 170
++ H +G AF+ +++ L + + LE ++ G Y G++
Sbjct: 384 MWNSHESGDRDAFISMLEVLCNSGK-TLEAIDLLHMMPEKGIDTDIGMYNMVFSALGKLK 442
Query: 171 NVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
V + LF + A+ + TYN ++ +Y GL DK LF +++ ++ P ++TY
Sbjct: 443 QVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEMEA-SSCKPDVITY 501
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
NTLI+ G+ +D F+E+++ P+VFTY+ LI + + ++ M A
Sbjct: 502 NTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEMIA 561
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
+P+ TY +LL G K YE +K
Sbjct: 562 EGCIPNIVTYNILLDCLERRGKTAEAHKHYETMKQQ 597
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 76/388 (19%), Positives = 145/388 (37%), Gaps = 59/388 (15%)
Query: 142 NWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYM 201
+ R R+ G + +E + KG K D+FA YN LL A
Sbjct: 196 HLRSREVSKGFEVYEEMHRKGYKL-----------DIFA------------YNMLLDALA 232
Query: 202 YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV 261
G+ D+ +F D+K++ + P TY LI + G+ + F E+ + N+
Sbjct: 233 KAGMVDQAYQVFEDMKQKYCV-PDAYTYTILIRMSGKTGQTYKFLSFFDEMVSRGCALNL 291
Query: 262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321
YN +I M KV + M P+ TY L L A G L R+ ++ ++
Sbjct: 292 IAYNTVIEALGKNKMVDKVIFVLSKMIESDCQPNQFTYSLTLDILATEGQLHRLNEVLDI 351
Query: 322 VKHHVDGKEFPLIRAMICAYSKCSVTDRI---------------------------KKIE 354
+++ + + +C S + K +E
Sbjct: 352 CDRYLNKSIYSYLVKSLCKSGHASEAHNVFCRMWNSHESGDRDAFISMLEVLCNSGKTLE 411
Query: 355 A--LMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME--KSINDAFEHKTSVTTVRIMRCIV 410
A L+ ++PEK + + + V++ L+++ ++ D + + ++
Sbjct: 412 AIDLLHMMPEKGIDTDIGMYNM-VFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMI 470
Query: 411 SSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID 470
SSY R VDK + + E++ + Y++ + ++E + KEM+ D
Sbjct: 471 SSYGRVGLVDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYD 530
Query: 471 CSKKTFWIMYYAYATCGQRRKVNQVLGL 498
T+ + + G+ KV+ L
Sbjct: 531 PDVFTYSTLIECF---GKSNKVDMACSL 555
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I G+ ++D A LF E K + + TY+ L+ + + D SLF ++
Sbjct: 501 YNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLIECFGKSNKVDMACSLFDEMI 560
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
E I P+IVTYN L+ R ++ +K L+P+ TY+ L
Sbjct: 561 AEGCI-PNIVTYNILLDCLERRGKTAEAHKHYETMKQQGLTPDSITYSIL 609
>gi|449017269|dbj|BAM80671.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 686
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 16/190 (8%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAE-------------AANKHL-KTIGTYNAL 196
G+P E YT I GR+ D A ++ E + N L ++ TYNA+
Sbjct: 227 GSP-NIECYTTLIVAYGRLRQADKAVEILNELQARCRTLNNEEQSDNLALCPSLRTYNAV 285
Query: 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256
+ A + G DK +F ++ I+P+ V+YN L+ R V+ M+ +++ +
Sbjct: 286 MNACVAAGDVDKAHQVFGEMVDAQGIAPNEVSYNILLKSHARRGRVEAMQLVLDQMRAAG 345
Query: 257 LSPNVFTYNYLIAGYMTAWMWGKVEEIYQ-MMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
+P++ TY L+ GY+TA K EE+ ++ + PD++ + LL GY + + +
Sbjct: 346 CAPSLVTYTTLVKGYVTANKLEKAEEVLNDILYKKRLEPDSHLFNCLLEGYVRANDWKKA 405
Query: 316 EKIYELVKHH 325
K+ + ++ H
Sbjct: 406 LKLADTMRQH 415
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 10/157 (6%)
Query: 170 NNVDLAADLFAEAANKHLKTIG--TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+VD A +F E + +YN LL ++ G + Q L D + A +PS+V
Sbjct: 293 GDVDKAHQVFGEMVDAQGIAPNEVSYNILLKSHARRGRVEAMQ-LVLDQMRAAGCAPSLV 351
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKD----SNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
TY TL+ + + + +E A + + D L P+ +N L+ GY+ A W K ++
Sbjct: 352 TYTTLVKGY---VTANKLEKAEEVLNDILYKKRLEPDSHLFNCLLEGYVRANDWKKALKL 408
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
M+ MPD T L++ +G EKI E
Sbjct: 409 ADTMRQHGTMPDGYTNTQLVKVCIQAGRFDLAEKIVE 445
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 95/241 (39%), Gaps = 50/241 (20%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
G N L+ A + D +F +L+ SP+I Y TLI +GRL D
Sbjct: 196 GQLNTLMMACIRRKKPDVAIRIFHELEPLVLGSPNIECYTTLIVAYGRLRQADKAVEILN 255
Query: 251 EI-----------KDSNLS--PNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDT 296
E+ + NL+ P++ TYN ++ + A K +++ +M+ A + P+
Sbjct: 256 ELQARCRTLNNEEQSDNLALCPSLRTYNAVMNACVAAGDVDKAHQVFGEMVDAQGIAPNE 315
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
+Y +LL+ +A G + M+ + + +RA CA S + T
Sbjct: 316 VSYNILLKSHARRGRVEAMQLVLD------------QMRAAGCAPSLVTYTT-------- 355
Query: 357 MRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC 416
L++ Y + LE+ E+ +ND K + C++ Y R
Sbjct: 356 ----------------LVKGYVTANKLEKAEEVLNDILYKKRLEPDSHLFNCLLEGYVRA 399
Query: 417 N 417
N
Sbjct: 400 N 400
>gi|242054627|ref|XP_002456459.1| hypothetical protein SORBIDRAFT_03g036700 [Sorghum bicolor]
gi|241928434|gb|EES01579.1| hypothetical protein SORBIDRAFT_03g036700 [Sorghum bicolor]
Length = 429
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 28/193 (14%)
Query: 155 TKEEYT-KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLF 213
+ E++T + ++ GR + AA F KH K++ +NALL AY+ G D
Sbjct: 128 SNEDFTVRILRLYGRASMPSHAAATFVGLPPKH-KSVAAFNALLAAYVDTGDFDSLAIAL 186
Query: 214 RD-----------------LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256
+ L + ++P +V++N+L++ F D E ++ +K+ N
Sbjct: 187 DEIPGSQKAEPSAALDVISLMDKCGLTPDMVSFNSLLNGFYNNGRFDKAEKIWEMMKERN 246
Query: 257 LSPNVFTYNYLIAGYMTAWMWGKVEE----IYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
L PN TYN + G + G++E+ I +M+K GP PD+ +Y L+RGY G L
Sbjct: 247 LQPNAKTYNAKLRGLVAE---GRMEDAAAVIQRMLKEGP-KPDSVSYNELIRGYCKEGRL 302
Query: 313 PRMEKIY-ELVKH 324
+K+Y ELVK+
Sbjct: 303 DESKKVYDELVKN 315
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
++N+LL + NG DK + ++ ++ KE N+ P+ TYN + ++ A Q
Sbjct: 218 SFNSLLNGFYNNGRFDKAEKIW-EMMKERNLQPNAKTYNAKLRGLVAEGRMEDAAAVIQR 276
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ P+ +YN LI GY + +++Y + P+ T+ L+ G
Sbjct: 277 MLKEGPKPDSVSYNELIRGYCKEGRLDESKKVYDELVKNGYAPNKGTFETLIPCLVEVGE 336
Query: 312 L 312
L
Sbjct: 337 L 337
>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
Length = 790
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 2/147 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I GR V+ A +F E N K I ++N+L+ NG D+ F++++
Sbjct: 539 YNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMR 598
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+E +SP +VTY+TLI FG+ V+ F E+ SPN+ TYN L+ +
Sbjct: 599 EEG-LSPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRT 657
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLR 304
+ ++Y +K + PD+ TY +L R
Sbjct: 658 AEAVDLYAKLKQQGLTPDSITYAVLER 684
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 2/147 (1%)
Query: 175 AADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A DL ++ K + T YN +L A + L+ +K++ SP I +YN LI
Sbjct: 485 ALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGP-SPDIFSYNILI 543
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
S FGR V+ F+E+++S+ P++ ++N LI + ++ M+ +
Sbjct: 544 SSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLS 603
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYE 320
PD TY L+ + + + ++++
Sbjct: 604 PDVVTYSTLIECFGKTDKVEMACRLFD 630
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/263 (18%), Positives = 110/263 (41%), Gaps = 10/263 (3%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
D+ +F+D+K++ + P TY +I + G++ D FQE+ + +PN+ YN
Sbjct: 309 DQVYMVFKDMKRK-HCEPDEYTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNT 367
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
+I M K ++ M P+ T+ ++L G L R++++ E+ +
Sbjct: 368 MIQALANNRMVDKTIFLFSKMVENNCRPNGFTFSVILNVLVAEGQLGRLDEVVEVSNKFM 427
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLE 384
+ + + + S R+ ++ E + ++++L L + L+
Sbjct: 428 NKSIYAYLVRTLSKLGHASEAHRLLHLQYDWSFHDEGDRDAYMSMLESLCDAGKTTEALD 487
Query: 385 EMEKSINDAFEHKTSVTTVRIM-RCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
+ K H+ ++T +M ++S+ + L + ++ + G Y+
Sbjct: 488 LLSKI------HEKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNI 541
Query: 444 KMVMYASQRRVEEMESVLKEMEN 466
+ + RVEE + +E+EN
Sbjct: 542 LISSFGRAGRVEEAVKIFEELEN 564
>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 5/155 (3%)
Query: 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
++D A DLF + K +K + TYN+L+ G L D+ E I+P++VT+
Sbjct: 271 HMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMI-ERKINPNVVTF 329
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
N+LI F + + E F E+ ++ PN+ TYN LI G+ + ++I+ +M +
Sbjct: 330 NSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS 389
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
+PD TY L++G+ + R+E+ EL +
Sbjct: 390 KDCLPDVVTYNTLIKGFCKA---KRVEEGMELFRE 421
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 2/150 (1%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A LF E + + I TYN+L+ + + D+ Q +F L + P +VTYNTLI
Sbjct: 345 AEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFT-LMVSKDCLPDVVTYNTLI 403
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
F + V+ F+E+ L N TYN LI G A ++I++ M + V
Sbjct: 404 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVP 463
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
PD TY +LL G G L + ++E ++
Sbjct: 464 PDIITYSILLDGLCKYGKLEKALVVFEYLQ 493
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 114/279 (40%), Gaps = 27/279 (9%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C +R S A V+ M ++G +P + + + G + ++ + R+
Sbjct: 160 GYCHGKRISEAVALVDQMVEMGYKP----DTVTFNTLIHGL---FLHNKASEAVALIDRM 212
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
DLF TY ++ G D SL + ++K I ++V Y
Sbjct: 213 VARGCQPDLF------------TYGTVVNGLCKRGDIDLALSLLKKMEK-GKIEANVVIY 259
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
NT+I + +D F +++ + P+VFTYN LI+ W + M
Sbjct: 260 NTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIE 319
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+ P+ T+ L+ +A G L EK++ E+++ +D P I + + D
Sbjct: 320 RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID----PNIVTYNSLINGFCMHD 375
Query: 349 RIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEE 385
R+ + + + L+ K+ P + LI+ + K +EE
Sbjct: 376 RLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEE 414
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 8/156 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y IK + V+ +LF E + + L TYN L+ G D Q +F+ +
Sbjct: 399 YNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMV 458
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + P I+TY+ L+ + ++ F+ ++ S + PN++TYN +I G A
Sbjct: 459 SDG-VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKA--- 514
Query: 278 GKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
GKVE +++ + V P+ Y ++ G+ G
Sbjct: 515 GKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKG 550
>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
Length = 734
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 5/169 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANIS--PSIVTYNTLISVFGRLLLVDHMEAAF 249
+Y+ LL + +++ L R + + S P++VTY T+I + L D E F
Sbjct: 171 SYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVF 230
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
Q++ D+ + PN TYN LI GY++ W +V ++ + M A + PD TY LL +
Sbjct: 231 QQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLN---YL 287
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
L M +L+ + + + AY+KC + D+ I MR
Sbjct: 288 CALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMR 336
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N AY G+ DK +F +++ +SP++V Y LI +L VD E F ++
Sbjct: 312 FNIFFSAYAKCGMIDKAMDIFNKMRQHG-LSPNVVNYGALIDALCKLGRVDDAEVKFNQM 370
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ ++PN+ +N L+ G T W + EE +Y+M+ G + P+ + L+ + G
Sbjct: 371 INEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQG-ICPNAVFFNTLICNLCNVGR 429
Query: 312 LPRMEKIYELVKH 324
+ ++ +L++H
Sbjct: 430 VMEGRRLIDLMEH 442
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y L+ Y G +D+ + +F D +SP+ VTYNTL+ + +D F+E
Sbjct: 451 SYTPLISGYCLAGRTDEAEKVF-DGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFRE 509
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ ++P V TYN ++ G + + +E+Y M D TY ++L G S
Sbjct: 510 MLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNC 569
Query: 312 LPRMEKIYE 320
+ K+++
Sbjct: 570 VDEAFKMFQ 578
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 95/271 (35%), Gaps = 41/271 (15%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TI 190
+R ALE+L G P YT I + D A +F + + +K
Sbjct: 183 NRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNN 242
Query: 191 GTYNALLGAYMY----------------NGLSDKCQSL---------------FRDLKKE 219
TYN L+ Y+ GL C + F DL E
Sbjct: 243 DTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMHSFLDLMVE 302
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
+SP +N S + + ++D F +++ LSPNV Y LI
Sbjct: 303 NGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDD 362
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP---LIRA 336
E + M V P+ + L+ G + + E+ ELV +D P
Sbjct: 363 AEVKFNQMINEGVTPNIVVFNSLVYGLC---TVDKWERAEELVYEMLDQGICPNAVFFNT 419
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
+IC + C+V R+ + L+ L+ RP
Sbjct: 420 LIC--NLCNV-GRVMEGRRLIDLMEHVGVRP 447
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 114/298 (38%), Gaps = 44/298 (14%)
Query: 211 SLFRDLKKEANI--SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
SLF + +E +I +P+ TY+ LI R+ + H A F I + N N L+
Sbjct: 81 SLFNRMVRECSIKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLL 140
Query: 269 AGYMTAWMWGKVEEI-YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
G G+ ++ Q M PDT +Y +LL+G+ N R E+ EL++ +
Sbjct: 141 KGLCDGKRVGEAMDVLLQRMPELGCTPDTVSYSILLKGFC---NENRAEEALELLRMMAN 197
Query: 328 --GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE 385
G+ P + Y+ +V D + K + R E ++ ++
Sbjct: 198 DHGRSCP---PNVVTYT--TVIDGLCKAQLFDR--AEGVFQQM--------------IDN 236
Query: 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445
K ND + C++ Y ++ +++ + G + Y S +
Sbjct: 237 GVKPNNDTYN------------CLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLL 284
Query: 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ + EM S L M + F I + AYA CG K + M ++G
Sbjct: 285 NYLCA---LSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 339
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 52/263 (19%), Positives = 94/263 (35%), Gaps = 57/263 (21%)
Query: 112 CLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN 171
C R G ++LM+ +G RP A TP+ G AGR
Sbjct: 425 CNVGRVMEGRRLIDLMEHVGVRP------------DAFSYTPLIS-----GYCLAGR--- 464
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
D A +F + L T TYN LL Y D LFR++ ++ ++P +VTYN
Sbjct: 465 TDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKG-VTPGVVTYN 523
Query: 231 T-----------------------------------LISVFGRLLLVDHMEAAFQEIKDS 255
T +++ + VD FQ +
Sbjct: 524 TILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSK 583
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
L N+ T+ +I + +++ + A ++P+ TY L+ G+L
Sbjct: 584 GLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEF 643
Query: 316 EKIYELVKHHVDGKEFPLIRAMI 338
+ ++ ++ + ++ A++
Sbjct: 644 DSLFSAMEKNGTAPNSQMLNALV 666
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 8/144 (5%)
Query: 175 AADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +L+ N K I TYN +L + D+ +F+ L + + +I+T+ +I
Sbjct: 538 AKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKG-LQLNIITFTIMI 596
Query: 234 SVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
G LL E A F I + L PNV TY + + + + ++ M+
Sbjct: 597 ---GALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKN 653
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPR 314
P++ L+R H G++ R
Sbjct: 654 GTAPNSQMLNALVRRLLHRGDISR 677
>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Glycine max]
Length = 911
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 7/197 (3%)
Query: 172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
+D A +F NK+ I +N+L+ Y Y GL D + L +K+E I P +VT+N+
Sbjct: 419 LDKAEVVFHHTKNKN---ICAWNSLISGYTYKGLFDNAEKLLNQMKEEG-IKPDLVTWNS 474
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L+S + + A IK L+PNV ++ +I+G + + + M+
Sbjct: 475 LVSGYSMSGRSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEEN 534
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351
V P++ T LLR A S L E+I+ H + + A+I Y K ++K
Sbjct: 535 VKPNSTTICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGK---GGKLK 591
Query: 352 KIEALMRLIPEKEYRPW 368
+ R I EK W
Sbjct: 592 VAHEVFRNIKEKTLPCW 608
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 100/250 (40%), Gaps = 36/250 (14%)
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
N+++S++ R ++ AF +D N + ++N +I+ Y ++ Q M++
Sbjct: 271 NSIVSMYSRNNRLELARVAFDSTEDHNSA----SWNSIISSYAVNDCLNGAWDLLQEMES 326
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
V PD T+ LL G+ G+ YE V F +++ CS+T
Sbjct: 327 SGVKPDIITWNSLLSGHLLQGS-------YENVL-----TNFRSLQSAGFKPDSCSITSA 374
Query: 350 IKKIEAL-------------MRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396
++ + L MR + EY ++ L+ Y K DCL++ E H
Sbjct: 375 LQAVIGLGCFNLGKEIHGYIMR--SKLEYDVYVCTSLVDKYIKNDCLDKAEVVF-----H 427
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
T + ++S Y D + + + G + ++S + Y+ R EE
Sbjct: 428 HTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRSEE 487
Query: 457 MESVLKEMEN 466
+V+ +++
Sbjct: 488 ALAVINRIKS 497
>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial; Flags: Precursor
Length = 602
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAY-MYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
A +L+ E + + I TYN L+ Y M N LS+ L DL SP IVT+ +L
Sbjct: 317 ANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML--DLMVRNKCSPDIVTFTSL 374
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I + + VD F+ I L N TY+ L+ G+ + EE++Q M + V
Sbjct: 375 IKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV 434
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHVD 327
+PD TY +LL G +G L + +I+E L K +D
Sbjct: 435 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 470
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I R +D A LF E K +K+ + TYN+L+ G + L +D+
Sbjct: 231 YSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMV 290
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
I P+++T+N L+ VF + + ++E+ +SPN+ TYN L+ GY
Sbjct: 291 SR-EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 349
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
+ + +M PD T+ L++GY
Sbjct: 350 SEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 3/160 (1%)
Query: 161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
KG+ G+++ + D E N + TYN+++ +G + L R ++ E
Sbjct: 166 KGLFLEGKVSEAVVLVDRMVE--NGCQPDVVTYNSIVNGICRSGDTSLALDLLRKME-ER 222
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
N+ + TY+T+I R +D + F+E++ + +V TYN L+ G A W
Sbjct: 223 NVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDG 282
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ + M + ++P+ T+ +LL + G L ++Y+
Sbjct: 283 ALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYK 322
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%)
Query: 168 RINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R + LA DL + +++K + TY+ ++ + +G D SLF++++ + I S+
Sbjct: 205 RSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG-IKSSV 263
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTYN+L+ + + +++ + PNV T+N L+ ++ + E+Y+
Sbjct: 264 VTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKE 323
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
M + P+ TY L+ GY L + +L+
Sbjct: 324 MITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 22/216 (10%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR 168
KG C+ +R +G +++ + + R +A +T +G +G+
Sbjct: 376 KGYCMVKRVDDG---MKVFRNISKRGLVA--------------NAVTYSILVQGFCQSGK 418
Query: 169 INNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
I LA +LF E ++ L + TY LL NG +K +F DL+K + + IV
Sbjct: 419 IK---LAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQK-SKMDLGIV 474
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
Y T+I + V+ F + + PNV TY +I+G + + + M
Sbjct: 475 MYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM 534
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+ P+ TY L+R + G+L K+ E +K
Sbjct: 535 EEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 570
>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63080, mitochondrial; Flags: Precursor
gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 614
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 5/179 (2%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TI 190
P LAL +LN + + Y+ I + +VD A +LF E NK ++ +
Sbjct: 219 GEPDLALNLLNKMEKGKIEADVVI---YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDV 275
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TY++L+ G L D+ E I+P++VT+N+LI F + + E F
Sbjct: 276 FTYSSLISCLCNYGRWSDASRLLSDML-ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFD 334
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
E+ ++ PN+ TYN LI G+ + ++I+ +M + +PD TY L+ G+ +
Sbjct: 335 EMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKA 393
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 4/151 (2%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A LF E + + I TYN+L+ + + D+ Q +F L + P +VTYNTLI
Sbjct: 329 AEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFT-LMVSKDCLPDVVTYNTLI 387
Query: 234 SVFGRL-LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
+ F + +VD ME F+++ L N TY LI G+ A + +++ M + V
Sbjct: 388 NGFCKAKKVVDGME-LFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGV 446
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
P+ TY LL G +G L + ++E ++
Sbjct: 447 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 477
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/301 (19%), Positives = 121/301 (40%), Gaps = 11/301 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY A++ G D +L ++K I +V Y+T+I + VD F E
Sbjct: 207 TYGAVINGLCKRGEPDLALNLLNKMEK-GKIEADVVIYSTVIDSLCKYRHVDDALNLFTE 265
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + + P+VFTY+ LI+ W + M + P+ T+ L+ +A G
Sbjct: 266 MDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK 325
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL- 369
L EK++ E+++ +D P I + + DR+ + + + L+ K+ P +
Sbjct: 326 LIEAEKLFDEMIQRSID----PNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVV 381
Query: 370 --NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
N L+ + ++ ME + + V ++ +F+ + D K
Sbjct: 382 TYNTLINGFCKAKKVVDGME--LFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFK 439
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+ S G Y++ + ++E+ V + ++ K++ T+ IM G
Sbjct: 440 QMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAG 499
Query: 488 Q 488
+
Sbjct: 500 K 500
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 7/122 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ + D Q +F+ + + + P+I+TYNTL+ + ++ F+
Sbjct: 417 TYTTLIHGFFQASDCDNAQMVFKQMVSDG-VHPNIMTYNTLLDGLCKNGKLEKAMVVFEY 475
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAH 308
++ S + P+++TYN + G A GKVE +++ + V PD Y ++ G+
Sbjct: 476 LQKSKMEPDIYTYNIMSEGMCKA---GKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCK 532
Query: 309 SG 310
G
Sbjct: 533 KG 534
Score = 39.3 bits (90), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN + G + LF L + + P ++ YNT+IS F + L + F
Sbjct: 485 IYTYNIMSEGMCKAGKVEDGWDLFCSLSLKG-VKPDVIAYNTMISGFCKKGLKEEAYTLF 543
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
++K+ P+ TYN LI ++ E+ + M++ D +TY L+ H
Sbjct: 544 IKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTY-GLVTDMLHD 602
Query: 310 GNLPR 314
G L +
Sbjct: 603 GRLDK 607
>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
Length = 754
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 130/334 (38%), Gaps = 58/334 (17%)
Query: 52 APATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGS 111
+P H F RL S TL DAR L DELL D R L+E S
Sbjct: 35 SPPAHAAFRE--RLRSGTLGPDDAR----------HLFDELLLR-RDAPAPARGLNELLS 81
Query: 112 CLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN 171
L R + P LA+E+ R A T Y I R
Sbjct: 82 ALARAPPSA--------ACRDVPALAVELFKRMDRCACPEAAPTIYTYNILINCYRRARR 133
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
DL +F L + +YNAL+ + G DK LF ++ E I P++VTY+
Sbjct: 134 PDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAHDLFYKME-EQGIMPNVVTYS 192
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
+LI+ + +D E +++ + + PN TYN LI GY T+ MW + +++ M +
Sbjct: 193 SLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSS 252
Query: 291 PVMPDTN-----------------------------------TYLLLLRGYAHSGNLPRM 315
++PD +Y LL GYA +G + M
Sbjct: 253 LLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGM 312
Query: 316 EKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
+ ++ ++ + + +I AY++ + D+
Sbjct: 313 DNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDK 346
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+N L+ AY G+ DK +F D+ K+ ++P I+T++T+IS F RL +D F
Sbjct: 330 VFNTLINAYARLGMMDKSLLMFEDMTKQG-VNPDIITFSTVISAFCRLGRLDDAMEKFNH 388
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ D+ + P+ Y+ LI G K +E I M+ G P + ++ G
Sbjct: 389 MIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEG 448
Query: 311 NLPRMEKIYELVKH 324
+ + + +L+ H
Sbjct: 449 RVAEGKDVVDLIIH 462
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 9/205 (4%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
GRI A D+F K K + +Y ALL Y G +LF + E + P
Sbjct: 272 GRIKE---ARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEG-VVPD 327
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+NTLI+ + RL ++D F+++ ++P++ T++ +I+ + E +
Sbjct: 328 RHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFN 387
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD-GKEFPLIRAMICAYSKC 344
M V PDT Y L++G + +L K EL+ + G P I+ +
Sbjct: 388 HMIDTGVPPDTAVYSCLIQGQCNRRDL---VKAKELISDMLSKGIPPPCIKFFTSIINNL 444
Query: 345 SVTDRIKKIEALMRLIPEKEYRPWL 369
R+ + + ++ LI RP L
Sbjct: 445 CKEGRVAEGKDVVDLIIHTGQRPNL 469
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/357 (16%), Positives = 132/357 (36%), Gaps = 37/357 (10%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ Y +G+ + +F+++ + P + N+ ++ + + F
Sbjct: 225 TYNCLIHGYSTSGMWKESVRVFKEMSSSL-LVPDVGNCNSFMTALCKHGRIKEARDIFDS 283
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG- 310
+ P+V +Y L+ GY TA ++ ++ +M V+PD + + L+ YA G
Sbjct: 284 MVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGM 343
Query: 311 -------------------------------NLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
L R++ E H +D P C
Sbjct: 344 MDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSC 403
Query: 340 -AYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEH 396
+C+ D +K E + ++ + P + +I KE + E K + D H
Sbjct: 404 LIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAE-GKDVVDLIIH 462
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
+ +V Y + + + ES G Y++ + Y R+++
Sbjct: 463 TGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDD 522
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
++ ++M + ++ + ++ I+ + + ++ M ++G V ++ + +
Sbjct: 523 ALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYAT 579
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 2/142 (1%)
Query: 174 LAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
+A ++F E + +I TY +LG N +D+ L L N+ I+T+N +
Sbjct: 557 VAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLF-SMNVKFDILTFNIV 615
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I ++ + F I L P + TY +I + + + ++ M+
Sbjct: 616 IRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEKSSC 675
Query: 293 MPDTNTYLLLLRGYAHSGNLPR 314
PD+ ++R + G + +
Sbjct: 676 TPDSRILNEIIRMLLNKGEVAK 697
>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
[Arabidopsis thaliana]
Length = 602
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAY-MYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
A +L+ E + + I TYN L+ Y M N LS+ L DL SP IVT+ +L
Sbjct: 317 ANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNML--DLMVRNKCSPDIVTFTSL 374
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I + + VD F+ I L N TY+ L+ G+ + EE++Q M + V
Sbjct: 375 IKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGV 434
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHVD 327
+PD TY +LL G +G L + +I+E L K +D
Sbjct: 435 LPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 470
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 17/214 (7%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLAL--EVLNWRRRQA----GYGTPMTKEE----- 158
G CL + S V+ M + G +P + ++N R + EE
Sbjct: 167 GLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKA 226
Query: 159 ----YTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLF 213
Y+ I R +D A LF E K +K+ + TYN+L+ G + L
Sbjct: 227 DVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLL 286
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+D+ I P+++T+N L+ VF + + ++E+ +SPN+ TYN L+ GY
Sbjct: 287 KDMVSR-EIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCM 345
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
+ + +M PD T+ L++GY
Sbjct: 346 QNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 74/159 (46%), Gaps = 3/159 (1%)
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
G+ G+++ + D E N + TYN+++ +G + + R ++ E N
Sbjct: 167 GLCLEGKVSKAVVLVDRMVE--NGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKME-ERN 223
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
+ + TY+T+I R +D + F+E++ + +V TYN L+ G A W
Sbjct: 224 VKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGA 283
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ + M + ++P+ T+ +LL + G L ++Y+
Sbjct: 284 LLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYK 322
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 22/216 (10%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR 168
KG C+ +R +G +++ + + R +A +T +G +G+
Sbjct: 376 KGYCMVKRVDDG---MKVFRNISKRGLVA--------------NAVTYSILVQGFCQSGK 418
Query: 169 INNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
I LA +LF E ++ L + TY LL NG +K +F DL+K + + IV
Sbjct: 419 IK---LAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQK-SKMDLGIV 474
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
Y T+I + V+ F + + PNV TY +I+G + + + M
Sbjct: 475 MYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKM 534
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+ P+ TY L+R + G+L K+ E +K
Sbjct: 535 EEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMK 570
>gi|225454795|ref|XP_002274101.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like
[Vitis vinifera]
Length = 1071
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 96/208 (46%), Gaps = 3/208 (1%)
Query: 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI 190
G + A+E+ N + R +G G + ++ YT I + G+ A+ LF E + +K
Sbjct: 827 GRKLDKAVEMFN-KARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPG 885
Query: 191 G-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+YN ++ Y GL + Q LF+ + ++ SP +TY LI + + E
Sbjct: 886 KVSYNIMINVYATAGLHHEAQELFQAMLRDG-CSPDSLTYLALIRAYTQSFKFLEAEETI 944
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+++ + P+ +N L++ + A + E +Y + + + PD Y +LRGY
Sbjct: 945 MSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGYLDY 1004
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAM 337
G + + +E ++ V+ F + A+
Sbjct: 1005 GCVEKGITFFEQIRESVEPDRFIMSSAV 1032
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 10/180 (5%)
Query: 146 RQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG------TYNALLGA 199
R G + + Y I GR +D A ++F +A +G TY L+
Sbjct: 804 RMVSLGVAPSIQTYNTMISVYGRGRKLDKAVEMFNKA---RCSGVGVSLDEKTYTNLISY 860
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
Y G S + LFR++++E I P V+YN +I+V+ L + FQ + SP
Sbjct: 861 YGKAGKSHEASLLFREMQEEG-IKPGKVSYNIMINVYATAGLHHEAQELFQAMLRDGCSP 919
Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ TY LI Y ++ + + EE M+ V+P + LL +A +G E++Y
Sbjct: 920 DSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERVY 979
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 114/269 (42%), Gaps = 25/269 (9%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK----TI 190
R A + W + Q Y + YT ++ G++ + LA F E +
Sbjct: 173 RQARDFFGWMKLQLSYQPSVIV--YTILLRVYGQVGKIKLAEQAFLEMLEAGCEPDEVAC 230
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
GT +L Y G S + ++ E I PSI +N ++S + L + ++
Sbjct: 231 GT---MLCTYARWGRHKAMLSFYSAVQ-ERGIIPSIAVFNFMLSSLQKKSLHGKVIDLWR 286
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE----IYQMMKAGPVMPDTNTYLLLLRGY 306
E+ D + PN FTY +I+ + G VEE Y+M G V P+ TY LL+
Sbjct: 287 EMVDKGVVPNSFTYTVVISSLVKD---GLVEESFKTFYEMKNLGFV-PEEVTYSLLISLS 342
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM---RLIPEK 363
+ +GN K+YE +++ +++ Y K R + + M +++ ++
Sbjct: 343 SKTGNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNGDYSRAVSLFSEMEKNKIVADE 402
Query: 364 EYRPWLNVLLIRVYAKEDCLEEMEKSIND 392
+ LLIR+Y K E+ EK+ +
Sbjct: 403 ----VIYGLLIRIYGKLGLYEDAEKTFKE 427
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 2/163 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I + + N D A L+ + + + T +LL Y NG + SLF +++
Sbjct: 335 YSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNGDYSRAVSLFSEME 394
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K ++ ++ Y LI ++G+L L + E F+E + L N TY + ++ + +
Sbjct: 395 KNKIVADEVI-YGLLIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIAMAQVHLNSGNF 453
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
K I ++M++ + +Y++LL+ Y +L E ++
Sbjct: 454 EKALTIMELMRSRNIWFSRFSYIVLLQCYVMKEDLASAEATFQ 496
>gi|297737325|emb|CBI26526.3| unnamed protein product [Vitis vinifera]
Length = 1005
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 94/202 (46%), Gaps = 3/202 (1%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNA 195
A+E+ N + R +G G + ++ YT I + G+ A+ LF E + +K +YN
Sbjct: 767 AVEMFN-KARCSGVGVSLDEKTYTNLISYYGKAGKSHEASLLFREMQEEGIKPGKVSYNI 825
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
++ Y GL + Q LF+ + ++ SP +TY LI + + E +++
Sbjct: 826 MINVYATAGLHHEAQELFQAMLRDG-CSPDSLTYLALIRAYTQSFKFLEAEETIMSMQNE 884
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
+ P+ +N L++ + A + E +Y + + + PD Y +LRGY G + +
Sbjct: 885 GVLPSCVHFNQLLSAFAKAGFTEEAERVYHTLLSAGLSPDVACYRTMLRGYLDYGCVEKG 944
Query: 316 EKIYELVKHHVDGKEFPLIRAM 337
+E ++ V+ F + A+
Sbjct: 945 ITFFEQIRESVEPDRFIMSSAV 966
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 10/180 (5%)
Query: 146 RQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG------TYNALLGA 199
R G + + Y I GR +D A ++F +A +G TY L+
Sbjct: 738 RMVSLGVAPSIQTYNTMISVYGRGRKLDKAVEMFNKA---RCSGVGVSLDEKTYTNLISY 794
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
Y G S + LFR++++E I P V+YN +I+V+ L + FQ + SP
Sbjct: 795 YGKAGKSHEASLLFREMQEEG-IKPGKVSYNIMINVYATAGLHHEAQELFQAMLRDGCSP 853
Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ TY LI Y ++ + + EE M+ V+P + LL +A +G E++Y
Sbjct: 854 DSLTYLALIRAYTQSFKFLEAEETIMSMQNEGVLPSCVHFNQLLSAFAKAGFTEEAERVY 913
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/372 (20%), Positives = 155/372 (41%), Gaps = 29/372 (7%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I + + N D A L+ + + + T +LL Y NG + SLF +++
Sbjct: 314 YSLLISLSSKTGNRDEAIKLYEDMRYRRIVPSNYTCASLLTLYYKNGDYSRAVSLFSEME 373
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K ++ ++ Y LI ++G+L L + E F+E + L N TY + ++ + +
Sbjct: 374 KNKIVADEVI-YGLLIRIYGKLGLYEDAEKTFKETEQLGLLTNEKTYIAMAQVHLNSGNF 432
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
K I ++M++ + +Y++LL+ Y +L E ++ + + M
Sbjct: 433 EKALTIMELMRSRNIWFSRFSYIVLLQCYVMKEDLASAEATFQALS-KTGLPDAGSCNDM 491
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI-----ND 392
+ Y K + ++ K +R P E+ L +++VY K+ L + ++ I N
Sbjct: 492 LNLYIKLDLLEKAKDFIFQIRKDP-VEFDMELCKTVMKVYCKKGMLRDAKQLIQEMGTNG 550
Query: 393 AFEHKTSVTTVRIM--------------RCIVSSYFRCNAVDKLANFVKRAESAGWRLCR 438
F+ + T+ ++ ++S + R + K N + G
Sbjct: 551 LFKDSEFIQTLSLILKMLLKTAGGLSVASHLISKFTREGDISKAQNLNDQLVKLGRGAED 610
Query: 439 SLYHSKMVMYASQRRVEEMESVLKEMENYKIDC-SKKTFWI-MYYAYATCGQRRKVNQVL 496
+ S + +Y Q ++++ V +E C S K +I M AYA CG+ + +
Sbjct: 611 ASIASLITLYGKQHKLKKAIEVFSAIEG----CTSGKLIYISMIDAYAKCGKAEEAYHLY 666
Query: 497 GLMCKNGYDVPV 508
+ G ++ V
Sbjct: 667 EEVTGKGIELGV 678
>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 634
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ ++G +K LF+++K+ I+P + TY TL+ F ++ L++ F E
Sbjct: 124 TYSKVIGYLCNASKVEKAFQLFQEMKRNG-ITPDVYTYTTLLDRFCKVGLIEQARNWFDE 182
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ +PNV TY LI Y+ + EI++MM + +P+ TY L+ G+ +G
Sbjct: 183 MQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGE 242
Query: 312 LPRMEKIYELVKH 324
+ +IY +K+
Sbjct: 243 TEKACQIYARMKN 255
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 1/155 (0%)
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G +K ++ R++ + I P TY+ +I V+ FQE+K + ++P+V+T
Sbjct: 101 GKFEKAYNVIREMMSKGFI-PDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYT 159
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
Y L+ + + + + M+ P+ TY L+ Y + L R +I+E++
Sbjct: 160 YTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMML 219
Query: 324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
+ A+I + K T++ +I A M+
Sbjct: 220 SNGCVPNIVTYTALIDGHCKAGETEKACQIYARMK 254
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 14/155 (9%)
Query: 199 AYMYNGLSDKCQSLFRD---------LKK--EANISPSIVTYNTLISVFGRLLLVDHMEA 247
Y Y+ L DK LF+D L K E + +P++V Y ++ ++ D
Sbjct: 349 VYTYSSLIDK---LFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYR 405
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
+++ PNV TY +I G+ A + E+ Q+M + P+ TY +L+
Sbjct: 406 LMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCC 465
Query: 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342
+G L K+ E +K K + R +I +S
Sbjct: 466 AAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFS 500
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 56/283 (19%), Positives = 99/283 (34%), Gaps = 34/283 (12%)
Query: 37 TLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANV 96
L K +FTR LC ++R + PD+ + L N
Sbjct: 84 VLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIG--------YLCNA 135
Query: 97 DDLDKVFRVLDEKGSCLFRRHS---NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTP 153
++K F++ E +R+ + Y + L+ + + L + NW G
Sbjct: 136 SKVEKAFQLFQE-----MKRNGITPDVYTYTTLLDRF-CKVGLIEQARNWFDEMQQDGCA 189
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDK-CQS 211
YT I + + A ++F +N + I TY AL+ + G ++K CQ
Sbjct: 190 PNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQI 249
Query: 212 LFRDLKKEANI---------------SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256
R + +I P++VTY L+ + V + +
Sbjct: 250 YARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEG 309
Query: 257 LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
PN Y+ LI G+ + +E++ M P+ TY
Sbjct: 310 CEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTY 352
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 4/136 (2%)
Query: 177 DLFAEAANKHLKTIGTYNALLGAYMYNGLS--DKCQSLFRDL--KKEANISPSIVTYNTL 232
DL + K L+ N ++ M +GL K +R + +E P++VTY +
Sbjct: 366 DLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAM 425
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I FG+ VD Q + +PN TY LI A + ++ + MK
Sbjct: 426 IDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYW 485
Query: 293 MPDTNTYLLLLRGYAH 308
Y ++ G++H
Sbjct: 486 PKHIGMYRKVIEGFSH 501
>gi|356512321|ref|XP_003524868.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Glycine max]
Length = 733
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 96/206 (46%), Gaps = 5/206 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N LL + D + D+K I P +VTYNTLI+ + R VD E F E
Sbjct: 229 TFNILLWGMFLSLRLDTAVRFYEDMKSRG-ILPDVVTYNTLINGYFRFKKVDEAEKLFVE 287
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K ++ PNV ++ ++ GY+ A ++++ MK V P+ T+ LL G +
Sbjct: 288 MKGRDIVPNVISFTTMLKGYVAAGRIDDALKVFEEMKGCGVKPNVVTFSTLLPGLCDAEK 347
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRLIPEKEYRPWL 369
+ + E+V+ ++ K+ L M+ K D + +A++RL E +
Sbjct: 348 MAEARDVLGEMVERYIAPKDNALFMKMMSCQCKAGDLDAAADVLKAMVRLSIPTEAGHY- 406
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFE 395
+LI + K + ++ EK ++ E
Sbjct: 407 -GVLIESFCKANVYDKAEKLLDKLIE 431
>gi|326503836|dbj|BAK02704.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 399
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 132/313 (42%), Gaps = 17/313 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANIS--PSIVTYNTLISVFGRLLLVDHMEAAF 249
TY ++ Y G S + S + K+ +I +I TY L++ F R L + E F
Sbjct: 86 TYTLMINVY---GKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFAREGLCEKAEEVF 142
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E++ + P+V+ YN L+ Y A EI+ +M+ PD +Y +L+ Y +
Sbjct: 143 EEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGCEPDRASYNILVDAYGRA 202
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP-- 367
G E ++E +K P +++ + + + + + + E +M + + P
Sbjct: 203 GLHREAEAVFESLKRQ---GMAPTMKSHMLLLAAHARSGNVARCEEVMAQLHKSGLAPDT 259
Query: 368 -WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
LN +L Y + L++ME+ + A + V V++Y R ++++
Sbjct: 260 IALNAML-NAYGRAGRLDDMERLL--AAMERRGTRDVGTYNVAVNAYGRAGYLERMEAAF 316
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
E G + S+M YA ++ + +EM + T ++ A C
Sbjct: 317 ASLERRGLAADVVTWTSRMGAYARKKEYRRCLEIFEEMVDAGCYPDAGTAKVL---VAAC 373
Query: 487 GQRRKVNQVLGLM 499
R+V QV ++
Sbjct: 374 SDERQVEQVTAIV 386
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/277 (19%), Positives = 117/277 (42%), Gaps = 3/277 (1%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T TY LL AY G + + + +++ E I PS YN + + +
Sbjct: 13 TEDTYALLLRAYCTAGSLHRAEGVISEMR-EHGIPPSATVYNAYLDGLLKARCAEKAVEV 71
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+Q +K N TY +I Y + ++++ M++ + TY L+ +A
Sbjct: 72 YQRMKRERCRTNTETYTLMINVYGKSKQPMSAMKVFKEMQSIGCKANICTYTALVNAFAR 131
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G + E+++E ++ + A++ AYS+ +I +LM+ + + R
Sbjct: 132 EGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGFPQAASEIFSLMQHMGCEPDRAS 191
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
N+ L+ Y + E E ++ ++ + + T++ +++++ R V + + +
Sbjct: 192 YNI-LVDAYGRAGLHREAE-AVFESLKRQGMAPTMKSHMLLLAAHARSGNVARCEEVMAQ 249
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+G ++ + Y R+++ME +L ME
Sbjct: 250 LHKSGLAPDTIALNAMLNAYGRAGRLDDMERLLAAME 286
>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
Length = 700
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 134/326 (41%), Gaps = 33/326 (10%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLK---------KEANISPSIVTYNTLISVFGRLLLVD 243
YN L+ Y CQ RDL+ K +I P +TYN LI+ +L +V
Sbjct: 372 YNTLINGY--------CQ--VRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVT 421
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
E E++ S + P+V T+N LI Y TA K + M+ + D ++ ++
Sbjct: 422 KAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVV 481
Query: 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
+ + +G +P I + + + + ++I AY + T++ L+ EK
Sbjct: 482 KAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQ-------AFLLVEK 534
Query: 364 EYRPWLNV------LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN 417
++ LL++ + ++E E+ I ++ V I+S+
Sbjct: 535 MKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIY-TLRNQGLRPDVVSYNTIISACCNKG 593
Query: 418 AVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW 477
DK ++ G R YH+ + AS RV +ME + ++M + ++ S +
Sbjct: 594 DTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYG 653
Query: 478 IMYYAYATCGQRRKVNQVLGLMCKNG 503
IM AY C KV + M + G
Sbjct: 654 IMVDAYVRCENDSKVASLKKEMSEKG 679
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 144/358 (40%), Gaps = 21/358 (5%)
Query: 165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDL-KKEANIS 223
F GR +V A L A + +N ++ A + G D ++ R + + E
Sbjct: 134 FVGRHADVRAAFGLLVAAGAR--PDTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPP 191
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P +YN +I+ R F E+ D + PN TYN +I G++ G +E
Sbjct: 192 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKG---GDLEAG 248
Query: 284 Y----QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
+ QM+ GP P+ TY +LL G +G RM++ L+ FP
Sbjct: 249 FRLRDQMLHDGP-KPNIVTYNVLLSGLCRAG---RMDETRVLMDEMASHSMFPDGFTYSI 304
Query: 340 AYSKCSVTDRIKKIEALMRLIPEKEY--RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397
+ + T + + +L +K + +L+ K+ + + E+ + + H
Sbjct: 305 LFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVL-EMLVHT 363
Query: 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFV--KRAESAGWRLCRSLYHSKMVMYASQRRVE 455
V T I +++ Y C D F ++ +S R Y++ + V
Sbjct: 364 GLVPTTVIYNTLINGY--CQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVT 421
Query: 456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
+ E ++ EME +D S +TF + AY T GQ K VL M + G V +F S
Sbjct: 422 KAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGS 479
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/310 (21%), Positives = 122/310 (39%), Gaps = 23/310 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ ++ G + L RD P+IVTYN L+S R +D E
Sbjct: 231 TYNTMIDGHVKGGDLEAGFRL-RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDE 289
Query: 252 IKDSNLSPNVFTYNYLIAGYM-TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ ++ P+ FTY+ L G T + + +K G VM T +LL G G
Sbjct: 290 MASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKG-VMLGAYTCSILLNGLCKDG 348
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--- 367
+ + E++ E++ H + +I Y C V D ++ + + + RP
Sbjct: 349 KVAKAEQVLEMLVHTGLVPTTVIYNTLINGY--CQVRD-LRGAFCIFEQMKSRHIRPDHI 405
Query: 368 ----WLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
+N L L V ED + EMEKS D +V ++ +Y ++K
Sbjct: 406 TYNALINGLCKLEMVTKAEDLVMEMEKSGVDP--------SVETFNTLIDAYGTAGQLEK 457
Query: 422 LANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYY 481
+ + G + + S + + ++ E ++L +M + + + + +
Sbjct: 458 CFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIID 517
Query: 482 AYATCGQRRK 491
AY G +
Sbjct: 518 AYIESGDTEQ 527
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 72.0 bits (175), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 109/223 (48%), Gaps = 8/223 (3%)
Query: 102 VFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTK 161
+F+ + ++G L R N A V+ + + G + A EVL + + + T T
Sbjct: 582 IFQAMSQQGFALDARAYN--AVVDGLCKSGKVDK-AYEVLEEMKVKHVHPTVATYGSIVD 638
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G+ +I+ +D A LF EA +K ++ + Y++L+ + G D+ + ++ K+
Sbjct: 639 GL---AKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKG 695
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
++P++ T+N+L+ + +D FQ +K+ SPN +TY+ LI G + K
Sbjct: 696 -LTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKA 754
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+Q M+ ++P+ TY ++ G A GN+ ++E K
Sbjct: 755 FVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFK 797
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 2/163 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I G++ +D A + E K L + T+N+L+ A + D+ F+ +K
Sbjct: 668 YSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMK 727
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E SP+ TY+ LI+ R+ + +QE++ L PNV TY +I+G
Sbjct: 728 -EMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNI 786
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+++ K +PD+ ++ L+ G +++ +++E
Sbjct: 787 TDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFE 829
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 4/135 (2%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ + L+ A G + +L ++K + P IV YN I FG+ VD
Sbjct: 210 SVPLFTTLVRALAREGQMEPALALVDEVKGSC-LEPDIVLYNVCIDCFGKAGSVDMAWKF 268
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F E+K L P+ +Y ++ A G+ EE++ M+A +P Y ++ GY
Sbjct: 269 FHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGY-- 326
Query: 309 SGNLPRMEKIYELVK 323
G+ R + Y+L++
Sbjct: 327 -GSAERFDDAYKLLE 340
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 90/225 (40%), Gaps = 25/225 (11%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I G+ +D A LF + + H Y +L+ + +G + +++++
Sbjct: 458 YCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMI 517
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ P + NT + + V+ A F+++K P+V +Y+ LI G A
Sbjct: 518 RRGG-RPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQA 576
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL-----VKHHVDGKEFP 332
+ I+Q M D Y ++ G SG +++K YE+ VKH
Sbjct: 577 RETSNIFQAMSQQGFALDARAYNAVVDGLCKSG---KVDKAYEVLEEMKVKH-------- 625
Query: 333 LIRAMICAYSKCSVTDRIKKI----EALMRLIPEKEYRPWLNVLL 373
+ + Y S+ D + KI EA M K LNV+L
Sbjct: 626 -VHPTVATYG--SIVDGLAKIDRLDEAYMLFEEAKSKGIELNVIL 667
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
+ ++ ++N++L D+ +LF +KK+A P+I TYN +I + V+
Sbjct: 348 IPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDAK--PNISTYNIIIDMLCMAGRVNEAY 405
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
E++ + L PN+ + N ++ A + I++ P++ TY L+ G
Sbjct: 406 KIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGL 465
Query: 307 AHSGNLPRMEKIYE 320
G + +++E
Sbjct: 466 GKKGKIDDAYRLFE 479
>gi|255660934|gb|ACU25636.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 484
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 137/322 (42%), Gaps = 13/322 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + G + F D+K ISP ++TYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLCGKVETANRFFEDMKXR-EISPDVITYNTMINGYYRVKKIEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDRVDDALTLLEEMKGFGIKPNAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRLIPEKEYRPWL 369
+ I E+V ++ K+ + +I K D + +A++RL E +
Sbjct: 271 MSEASGILKEMVDKYIAPKDNSIFLRLISGQCKAGNLDAAADVLKAMIRLSVPTEAGHY- 329
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY-----FRCN--AVDKL 422
+LI Y K E+ K ++ E + + S+Y + CN K
Sbjct: 330 -GVLIENYCKAGDYEKAIKLLDKLIEKDIVLRPQSSLHMEPSAYNPLVEYLCNNGQTAKA 388
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482
V++ G + +L ++ + ++ + + +LK M KID K ++ + +
Sbjct: 389 ETLVRQLMKLGVQDPTAL-NTLIRGHSQEGSPDSAFELLKIMLRRKIDSEKSSYDSLVQS 447
Query: 483 YATCGQRRKVNQVLGLMCKNGY 504
Y + L M +NG+
Sbjct: 448 YLKKSEPADAKAALDSMIENGH 469
>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12775, mitochondrial; Flags: Precursor
gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
multiple PPR PF|01535 repeats. EST gb|AI999079 comes
from this gene [Arabidopsis thaliana]
gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 644
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 29/225 (12%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPR------------------LALEVLNWRRRQAGYG 151
G CL + S+ ++ M + G +P LA+E+L R+
Sbjct: 202 GLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELL---RKMEERN 258
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQ 210
+ +Y+ I + ++D A +LF E K K I TYN L+G + G D
Sbjct: 259 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGA 318
Query: 211 SLFRDLKKEANISPSIVTYNTLISVF---GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
L RD+ K ISP++VT++ LI F G+L D + +E+ ++PN TYN L
Sbjct: 319 KLLRDMIKR-KISPNVVTFSVLIDSFVKEGKLREADQL---LKEMMQRGIAPNTITYNSL 374
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
I G+ + ++ +M + PD T+ +L+ GY + +
Sbjct: 375 IDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRI 419
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Query: 192 TYNALLGAYMY-NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TYN+L+ + N L + Q + DL P I+T+N LI+ + + +D F+
Sbjct: 370 TYNSLIDGFCKENRLEEAIQMV--DLMISKGCDPDIMTFNILINGYCKANRIDDGLELFR 427
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+ + N TYN L+ G+ + ++++Q M + V PD +Y +LL G +G
Sbjct: 428 EMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNG 487
Query: 311 NLPRMEKIY---ELVKHHVDGKEFPLIRAMICAYSK 343
L + +I+ E K +D + +I +C SK
Sbjct: 488 ELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASK 523
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 105/235 (44%), Gaps = 24/235 (10%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I T+N L+ Y D LFR++ I+ + VTYNTL+ F + ++ + F
Sbjct: 403 IMTFNILINGYCKANRIDDGLELFREMSLRGVIANT-VTYNTLVQGFCQSGKLEVAKKLF 461
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
QE+ + P++ +Y L+ G K EI+ ++ + D Y++++ G ++
Sbjct: 462 QEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNA 521
Query: 310 GNLPRMEKIY---ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
+ ++ L +D + + ++ + +C D + K + L R + E+ +
Sbjct: 522 SKVDDAWDLFCSLPLKGVKLDARAYNIMISELCR------KDSLSKADILFRKMTEEGHA 575
Query: 367 P--WLNVLLIRVYAKED-------CLEEMEKSINDAFEHKTSVTTVRIMRCIVSS 412
P +LIR + +D +EEM+ S V+TV+++ ++SS
Sbjct: 576 PDELTYNILIRAHLGDDDATTAAELIEEMKSS-----GFPADVSTVKMVINMLSS 625
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 100/255 (39%), Gaps = 17/255 (6%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALE-------VLNWR--------RRQAGYGTPM 154
G CL R S V+ M ++G +P L LN + R G
Sbjct: 167 GLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQP 226
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLF 213
+ Y + + LA +L + +++K Y+ ++ +G D +LF
Sbjct: 227 NEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLF 286
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+++ + I+TYNTLI F D +++ +SPNV T++ LI ++
Sbjct: 287 NEMEIKG-FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVK 345
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
+ +++ + M + P+T TY L+ G+ L ++ +L+ +
Sbjct: 346 EGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMT 405
Query: 334 IRAMICAYSKCSVTD 348
+I Y K + D
Sbjct: 406 FNILINGYCKANRID 420
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 63/314 (20%), Positives = 131/314 (41%), Gaps = 35/314 (11%)
Query: 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
+D LFRD+ + + P+++ +N L S + + + A ++++ ++ +++T +
Sbjct: 69 ADDAVDLFRDMIQSRPL-PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVM-----PDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+I + Y G +M PDT + LL G R+ + E
Sbjct: 128 IMINCFCRCRKLS-----YAFSTMGKIMKLGYEPDTVIFNTLLNGLCLE---CRVSEALE 179
Query: 321 LVKHHVDGKEFPLIRAM------ICAYSKCSVTDRIKKIEALMR--LIP-EKEYRPWLNV 371
LV V+ P + + +C K V+D + I+ ++ P E Y P LNV
Sbjct: 180 LVDRMVEMGHKPTLITLNTLVNGLCLNGK--VSDAVVLIDRMVETGFQPNEVTYGPVLNV 237
Query: 372 LLI--RVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
+ + + L +ME E + V+ I+ + ++D N
Sbjct: 238 MCKSGQTALAMELLRKME-------ERNIKLDAVK-YSIIIDGLCKDGSLDNAFNLFNEM 289
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
E G++ Y++ + + + R ++ +L++M KI + TF ++ ++ G+
Sbjct: 290 EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKL 349
Query: 490 RKVNQVLGLMCKNG 503
R+ +Q+L M + G
Sbjct: 350 READQLLKEMMQRG 363
>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Brachypodium distachyon]
Length = 1285
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 79/353 (22%), Positives = 146/353 (41%), Gaps = 41/353 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ Y G D L+ +++ +P VTY LI G++ + +E
Sbjct: 242 TYNTMIHMYGKMGRLDLALGLYDEMRA-LGCTPDAVTYTVLIDSLGKMDRISDAGKVLEE 300
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ D+ L P + T++ LI Y + + M A V PD YL++L A SG+
Sbjct: 301 MADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARSGD 360
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL-N 370
+ ++ +Y+ + + + L + M+ A +K + D I+ + M ++ + P L +
Sbjct: 361 MRKLMALYQTMMNDGYRPDNALYQVMLAALAKGNEYDEIEAVVQDMEVVC--QMNPQLVS 418
Query: 371 VLLIRVYA--------KEDCLEEMEK------SINDAFE----HKTSVTTVRIMRCIVSS 412
+LI+ K+ CL+ E SI DA+E H+ ++ ++ +R V S
Sbjct: 419 SILIKAECISQGAKLLKKACLQGHEPDSKSLLSILDAYETTGKHEEGLSLLQFIREHVPS 478
Query: 413 YFRCNAV-----------DKLANFVKRAESAGWRLCRS------LYHSKMVMYASQRRVE 455
CN + K+A ++ S C S LY +
Sbjct: 479 --SCNLISECSIMLLCKNQKIAAAMQEYSSMQMLKCGSFGQDCNLYEYLITCLEEAEFFP 536
Query: 456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV 508
E V +M+ I+ S+K + M AY G +Q++ ++G + +
Sbjct: 537 EASQVFSDMQFIGIEPSRKIYESMISAYCKLGFPETAHQLMDEAVQSGISLNI 589
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/327 (20%), Positives = 133/327 (40%), Gaps = 10/327 (3%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA- 247
T+ +NA++G Y +G D + L D + + P +V++NTLI+ + + A
Sbjct: 62 TVQVFNAMMGVYARSGRFDDVRQLL-DAMRGQELEPDLVSFNTLINARAKSGCLAPGSAF 120
Query: 248 -AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
E++ L P+V TYN LI+ +++ M A PD TY ++ +
Sbjct: 121 DLLLEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVSVH 180
Query: 307 AHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRLIPEKE 364
G E+++ ELV+ + +++ A++K D ++++ E L+R +K+
Sbjct: 181 GRCGKAQDAERMFRELVEKGFK-PDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKKD 239
Query: 365 YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
+ +I +Y K L ++ + D ++ S + + +
Sbjct: 240 GITYNT--MIHMYGKMGRL-DLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGK 296
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
++ AG + + + + YA R EE M + + + +M A
Sbjct: 297 VLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIA 356
Query: 485 TCGQRRKVNQVLGLMCKNGYDVPVNAF 511
G RK+ + M +GY P NA
Sbjct: 357 RSGDMRKLMALYQTMMNDGYR-PDNAL 382
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 120/306 (39%), Gaps = 32/306 (10%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A DL E L+ + TYN L+ A D ++F ++ + P + TYN ++
Sbjct: 119 AFDLLLEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMA-SECRPDLWTYNAMV 177
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
SV GR E F+E+ + P+ TYN L+ + VE + + +
Sbjct: 178 SVHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFK 237
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT------ 347
D TY ++ Y G L +Y+ +RA+ C + T
Sbjct: 238 KDGITYNTMIHMYGKMGRLDLALGLYD------------EMRALGCTPDAVTYTVLIDSL 285
Query: 348 ---DRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEH--KTSV 400
DRI ++ + + +P L LI YAK EE ++ F H + V
Sbjct: 286 GKMDRISDAGKVLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRT----FSHMVASGV 341
Query: 401 TTVRIMRCIVSSYF-RCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES 459
R+ ++ R + KL + + G+R +LY + A +E+E+
Sbjct: 342 KPDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRPDNALYQVMLAALAKGNEYDEIEA 401
Query: 460 VLKEME 465
V+++ME
Sbjct: 402 VVQDME 407
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 7/163 (4%)
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
N LL Y NG DK ++ + EA + P+ TYNTLI ++ R L + E+
Sbjct: 768 NTLLLMYTGNGNFDKTVEVYHSIL-EAGLEPNEDTYNTLIVMYSRNLRPEEGFTLLNEMG 826
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
L+P + +Y L+A A +W + E++++ +++ + + Y +L++ Y + N
Sbjct: 827 KKGLTPKLESYKSLLAASGKAKLWEQAEQLFEEIRSKGYRLNRSLYHMLMKIYRDACNHS 886
Query: 314 RMEKIYELVKHHVDGKEFPLIRAM---ICAYSKCSVTDRIKKI 353
+ E++ +K DG E P I M + +Y D +K+
Sbjct: 887 KAEQLLASMKE--DGIE-PTIATMHILMTSYGTAGHPDEAEKV 926
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/319 (20%), Positives = 135/319 (42%), Gaps = 13/319 (4%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLLLVDHMEAAF 249
+NAL+ AY +GL + +++F D+ E P+I + N ++ GRL D +
Sbjct: 627 WNALIHAYAESGLYEHARAVF-DIMIEKGPLPTIDSVNGMMRALIIDGRL---DELYVIV 682
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
QE++D + T ++ + A +V +IY MK +P+ + Y ++ +
Sbjct: 683 QELQDMGFKISKSTVILMLDAFTKAGDIFEVMKIYNGMKEAGYLPNMHIYRSMISLLCRN 742
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
+E + ++ + ++ ++ Y+ D+ ++ I E P
Sbjct: 743 KRYRDVELMVVEMERAGFEPDLTILNTLLLMYTGNGNFDKTVEV---YHSILEAGLEPNE 799
Query: 370 NV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
+ LI +Y++ EE +N+ K + + ++++ + ++ +
Sbjct: 800 DTYNTLIVMYSRNLRPEEGFTLLNE-MGKKGLTPKLESYKSLLAASGKAKLWEQAEQLFE 858
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
S G+RL RSLYH M +Y + E +L M+ I+ + T I+ +Y T G
Sbjct: 859 EIRSKGYRLNRSLYHMLMKIYRDACNHSKAEQLLASMKEDGIEPTIATMHILMTSYGTAG 918
Query: 488 QRRKVNQVLGLMCKNGYDV 506
+ +VL + + +V
Sbjct: 919 HPDEAEKVLNSLKSSSLEV 937
>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 530
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 74/357 (20%), Positives = 154/357 (43%), Gaps = 15/357 (4%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
+L NW G+ P + E Y + I AG++ + DLA L ++ ++ T+ T++
Sbjct: 126 SLAFFNWATTLEGF--PSSPEPYNEMIDLAGKLRHFDLAWHLIDLMKSRGVRITVSTFSV 183
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ Y+ GL+ + F + ++ P V+++ +IS + E F +K
Sbjct: 184 LVRRYVRAGLAAEAVHAFNRM-EDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLK-H 241
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
P+V Y L+ G+ A K EE++ MK V P+ TY +++ G + R
Sbjct: 242 KFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSLCRCGQITRA 301
Query: 316 EKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI 374
++ E++ D +++ + K T+++ ++ M+ + N LI
Sbjct: 302 HDVFSEMIDAGCDPNAVTF-NSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYN-FLI 359
Query: 375 RVYAKEDCLEEMEKSINDAFEH---KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
+ K++ L+E K ++ + + T I CI + N ++ +K +
Sbjct: 360 ESHCKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELH-DVNGAHRMYAKMKELKC 418
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
L Y+ M M+A + ++ + + KEM+ +++ + T+ I+ + G
Sbjct: 419 MPNTLT---YNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGH 472
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 1/188 (0%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT 192
R LA E ++ R YG K ++ I + A F +K +
Sbjct: 190 RAGLAAEAVHAFNRMEDYGCKPDKVSFSIVISSLCKKRRASEAELFFDSLKHKFEPDVIV 249
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y +L+ + G K + +F D+K EA + P++ TY+ +I R + F E+
Sbjct: 250 YTSLVHGWCRAGDIAKAEEVFSDMK-EAGVKPNVYTYSIVIDSLCRCGQITRAHDVFSEM 308
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
D+ PN T+N L+ ++ A KV ++Y MK DT +Y L+ + NL
Sbjct: 309 IDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENL 368
Query: 313 PRMEKIYE 320
K+ +
Sbjct: 369 DEAVKVLD 376
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN L+ ++ + D+ + + K+ ++P+ T+N++ L V+ + +
Sbjct: 354 SYNFLIESHCKDENLDEAVKVLDTMVKKG-VAPNASTFNSIFGCIAELHDVNGAHRMYAK 412
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K+ PN TYN L+ + + V ++ + M V P+ NTY +L+ + G+
Sbjct: 413 MKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFCEKGH 472
Query: 312 LPRMEKIYELVKHHVDGK 329
Y L+K V+ K
Sbjct: 473 ---WNNAYNLMKEMVEEK 487
>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 566
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 5/186 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N L+ K + + R L+++ P++VTY ++IS + + ++ A + +
Sbjct: 271 THNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYND 330
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ SPNV TYN LI GY A G +YQ M +PD T+ L+ GY G
Sbjct: 331 MVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQ 390
Query: 312 LPRMEKIY-ELVKHHV--DGKEFPLIRAMICAYSKCS-VTDRIKKIEALMRLIPEK-EYR 366
L KI+ E+ ++H+ + F +I C ++ +KK+ + P+ Y
Sbjct: 391 LDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFIYN 450
Query: 367 PWLNVL 372
P ++VL
Sbjct: 451 PVIDVL 456
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YN L+ ++ +G +LF + SP + ++N +I ++ V +
Sbjct: 200 AYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVER 259
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + SP+ T+N L+ G A K E+ ++ + G MP+ TY ++ GY +G
Sbjct: 260 MDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAG 319
Query: 311 NLPRMEKIY 319
+ +Y
Sbjct: 320 RMEDAMAVY 328
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 69/159 (43%), Gaps = 12/159 (7%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R +D A ++ E A H++ T+ ++ + S + + + +I+P
Sbjct: 387 RCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQA 446
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---- 282
YN +I V + VD E+++ P+ +TY LI G+ M G++ E
Sbjct: 447 FIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHC---MKGRIAEAVTF 503
Query: 283 IYQMMKAGPVMPDT---NTYLLLLRGYAHSGNLPRMEKI 318
++M++ G PD+ N+++ L G + + +I
Sbjct: 504 FHKMVETG-CSPDSIVVNSFISCLLKSGMPGEVDHIMRI 541
>gi|255660922|gb|ACU25630.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 484
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP ++TYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVITYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ PNV TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGKNIEPNVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E++ ++ + + +I + K D + +A++RL
Sbjct: 271 MSEARSILKEMLDKYIAPTDNSIFMRLISSQCKAGNLDAAADVLKAMIRL 320
>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 135/317 (42%), Gaps = 9/317 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+++AL+G NG D+ FRD+K A ++P V Y LI F R ++ E
Sbjct: 500 SFSALIGLLSKNGCLDQALKYFRDMKN-AGLAPDNVIYTILIGGFCRNGVMSEALKVRDE 558
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + +V TYN ++ G M + +E++ M V PD T+ L+ GY GN
Sbjct: 559 MLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGN 618
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ + ++E++ + +I + K S +++ E +I + Y ++
Sbjct: 619 MNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVN--ELWNDMISRRIYPNHISY 676
Query: 372 -LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC--IVSSYFRCNAVDKLANFVKR 428
+LI Y C+ E + ++ E T I+ C IV Y R K F+
Sbjct: 677 GILINGYCNMGCVSEAFRLWDEMVEKGFEAT---IITCNTIVKGYCRAGNAVKADEFLSN 733
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
G Y++ + + + ++ +++ +MEN + T+ ++ ++ G+
Sbjct: 734 MLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGR 793
Query: 489 RRKVNQVLGLMCKNGYD 505
++ ++ M + G +
Sbjct: 794 MQEAELIMLKMIERGVN 810
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 4/183 (2%)
Query: 172 VDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
VDLA +++ E ++ + T N ++ A N + +S D++ E + P +VTYN
Sbjct: 339 VDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDME-EKGVFPDVVTYN 397
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKA 289
TLI+ + R L++ + L P VFTYN +I G + + + + +M+K
Sbjct: 398 TLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI 457
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
G + PDT TY +LL + N+ E+I++ + + A+I SK D+
Sbjct: 458 G-MSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQ 516
Query: 350 IKK 352
K
Sbjct: 517 ALK 519
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 4/162 (2%)
Query: 162 GIKFAGRINN--VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218
GI G N V A L+ E K + TI T N ++ Y G + K ++
Sbjct: 677 GILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLL 736
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
+ I P +TYNTLI+ F + +D A ++++S L P+V TYN ++ G+
Sbjct: 737 KG-IVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQ 795
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ E I M V PD +TY L+ G+ NL ++++
Sbjct: 796 EAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHD 837
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264
L + C++ FR LK + + SI N+L+ ++ VD +QE+ S + NV+T
Sbjct: 304 LREGCEA-FRVLKSKG-LCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTL 361
Query: 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
N +I + M+ V PD TY L+ Y G L E+ +EL+
Sbjct: 362 NIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLL---EEAFELM 416
Score = 38.5 bits (88), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ ++ D+ +L ++ + + P ++TYN +++ F R + E +
Sbjct: 745 TYNTLINGFIKEENMDRAFALVNKMEN-SGLLPDVITYNVILNGFSRQGRMQEAELIMLK 803
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
+ + ++P+ TY LI G++T + ++ M +PD
Sbjct: 804 MIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 847
>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
Length = 540
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 105/252 (41%), Gaps = 33/252 (13%)
Query: 125 ELMKQLGSRPRLALEVLNWRRRQAGYG--------------------------------T 152
E++K L + LAL W RQ G+ +
Sbjct: 125 EVLKNLSNAGILALAFFRWAERQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRS 184
Query: 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQS 211
++K+ + ++ R V A + F + ++ LKT + YN L+ + K +
Sbjct: 185 CLSKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHA 244
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F+++K++ P + TY L+ +G + ++A +QE+ D+ + P+V Y LI+ +
Sbjct: 245 IFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAF 304
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
+ + +++ M+ MP + Y +L+ G L K ++L K E
Sbjct: 305 CKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEV 364
Query: 332 PLIRAMICAYSK 343
P A+I AY +
Sbjct: 365 PTCNAVIGAYCR 376
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
N+ A +F E ++ LK T+ TYN+L+ G ++ + L ++ +N+ P+++TY
Sbjct: 318 NLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEML-SSNLKPNVITY 376
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY---QM 286
N LI+ + + L++ F I L+PNV T+N L+ GY +GK+EE + ++
Sbjct: 377 NALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCK---FGKMEEAFLLQKV 433
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
M +P+ +TY L+ G+ G +ME++ L+
Sbjct: 434 MLEKGFLPNASTYNCLIVGFCREG---KMEEVKNLL 466
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/353 (20%), Positives = 158/353 (44%), Gaps = 22/353 (6%)
Query: 174 LAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
L + F A + K ++ + N LL A + + +++++ + ISP+++T+NT+
Sbjct: 178 LGLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRK-ISPNLITFNTV 236
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV---EEIYQMMKA 289
I+ ++ ++ ++K PNV TYN LI GY GK+ + I + M
Sbjct: 237 INGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVE 296
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
V P++ T+ +L+ G+ NL K++E ++ G + ++ C+ +
Sbjct: 297 NKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQ--GLKPTVVTYNSLVNGLCN-EGK 353
Query: 350 IKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRI 405
+ + + L+ + +P NV+ LI Y K+ LEE + + D + V
Sbjct: 354 LNEAKVLLDEMLSSNLKP--NVITYNALINGYCKKKLLEE-ARELFDNIGKQGLTPNVIT 410
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
++ Y + +++ K G+ S Y+ +V + + ++EE++++L EM+
Sbjct: 411 FNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQ 470
Query: 466 NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG-------YDVPVNAF 511
+ T+ I+ A+ + +K +++ M G Y++ +N +
Sbjct: 471 CRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGY 523
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 92/218 (42%), Gaps = 52/218 (23%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
AL+V + Q T +T G+ G++N + D E + +LK + TYNA
Sbjct: 322 ALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLD---EMLSSNLKPNVITYNA 378
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF---QEI 252
L+ Y L ++ + LF ++ K+ ++P+++T+NTL+ + + ME AF + +
Sbjct: 379 LINGYCKKKLLEEARELFDNIGKQG-LTPNVITFNTLLHGYCKF---GKMEEAFLLQKVM 434
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM--------KAGPVM----------- 293
+ PN TYN LI G+ GK+EE+ ++ KA V
Sbjct: 435 LEKGFLPNASTYNCLIVGFCRE---GKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEK 491
Query: 294 -------------------PDTNTYLLLLRGYAHSGNL 312
P TY +LL GY GNL
Sbjct: 492 KEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNL 529
Score = 39.3 bits (90), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF-- 249
TYN L+ A+ K L ++ + + PS +TYN L++ + + ++ AA
Sbjct: 480 TYNILISAWCEKKEPKKAARLIDEMLDKG-LKPSHLTYNILLNGY---CMEGNLRAALNL 535
Query: 250 -QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE----IYQMMKAGPVMPDTNTYLLLLR 304
++++ NV TYN LI GY GK+E+ + +M++ G ++P+ TY ++
Sbjct: 536 RKQMEKEGRWANVVTYNVLIQGYCRK---GKLEDANGLLNEMLEKG-LIPNRTTYEIIKE 591
Query: 305 GYAHSGNLPRME 316
G LP +E
Sbjct: 592 EMMEKGFLPDIE 603
>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
Length = 540
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 105/252 (41%), Gaps = 33/252 (13%)
Query: 125 ELMKQLGSRPRLALEVLNWRRRQAGYG--------------------------------T 152
E++K L + LAL W RQ G+ +
Sbjct: 125 EVLKNLSNAGILALAFFRWAERQQGFRYSAEGFHNLIEALGKIKQFRLVWSLVEAMRCRS 184
Query: 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQS 211
++K+ + ++ R V A + F + ++ LKT + YN L+ + K +
Sbjct: 185 CLSKDTFKIIVRRYARARKVKEAVETFEKMSSFGLKTDLSDYNWLIDILSKSKQVKKAHA 244
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F+++K++ P + TY L+ +G + ++A +QE+ D+ + P+V Y LI+ +
Sbjct: 245 IFKEMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAF 304
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
+ + +++ M+ MP + Y +L+ G L K ++L K E
Sbjct: 305 CKSGKCDEAIKVFHEMEESGCMPSPHVYCMLINGLGSMERLDEALKYFQLSKESGFPMEV 364
Query: 332 PLIRAMICAYSK 343
P A+I AY +
Sbjct: 365 PTCNAVIGAYCR 376
>gi|168052517|ref|XP_001778696.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669911|gb|EDQ56489.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 799
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 126/308 (40%), Gaps = 8/308 (2%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
TI T+N LLGAY G+ + + L K A P +V+Y++L++ FG+ + +
Sbjct: 299 TIVTFNTLLGAYASQGMYTEALQVVGLLVK-AKFEPDVVSYSSLLNAFGKAGYPEKAQEV 357
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F +K + PN+ T+N L+ Y +A + + E+ M + P+ T L A
Sbjct: 358 FDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEARIEPNVVTICSLFAACAR 417
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ ++ ++ K P A I AY + D K AL+ ++ E+ RP
Sbjct: 418 ARCPEKVRDVFHEAKVRQIALNVPAFNAAITAYIEAGQFDEAK---ALLEVMEEQNLRPN 474
Query: 369 LNVLLIRVYAKEDCLEEME-KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
L+ + A + E +++ D TV +++++ + ++
Sbjct: 475 GVTFLLLINAAGSLGDYREARTLYDKMVDLGIPLTVEPCSALINAFAKHGMYNEARTIFD 534
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
AG + Y S M+ Y R ++ + +EM I F ++ A
Sbjct: 535 DMRKAGCKANVVTYTSLMIAY---RMYDDAQLACEEMVAAGITPDSIAFGTLFVALNKAN 591
Query: 488 QRRKVNQV 495
+ KV Q+
Sbjct: 592 RSEKVLQI 599
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/248 (18%), Positives = 106/248 (42%), Gaps = 10/248 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
++N +L G + +LF++++K P +VT+N L+ V+ + + F
Sbjct: 231 SHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQETFDM 290
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ ++P + T+N L+ Y + M+ + ++ ++ PD +Y LL + +G
Sbjct: 291 MIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGY 350
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ +++++L+K ++ AY+ +R ++ L+ + E P NV
Sbjct: 351 PEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARE---LLHDMAEARIEP--NV 405
Query: 372 L----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
+ L A+ C E++ ++A + ++ V +++Y D+ ++
Sbjct: 406 VTICSLFAACARARCPEKVRDVFHEAKVRQIAL-NVPAFNAAITAYIEAGQFDEAKALLE 464
Query: 428 RAESAGWR 435
E R
Sbjct: 465 VMEEQNLR 472
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR-------LLLVDHM 245
YN ++ + + +D+ + LF ++K P + TYN L++V GR L + D M
Sbjct: 90 YNCMIWLHARHQRADQARGLFYEMKV-WRCKPDVETYNALMNVHGRAGQWRWALQIFDDM 148
Query: 246 EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
A + I +P+ +YN LI ++ W K EI + M V PD TY ++L
Sbjct: 149 LQAPKPI-----APSRSSYNNLINACGSSGQWFKALEICKRMTDNGVGPDLMTYNIILSA 203
Query: 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
+ SG PR Y H+ K+ PL R
Sbjct: 204 F-KSGGQPRHAVAY---YDHLISKKVPLDR 229
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 82/210 (39%), Gaps = 10/210 (4%)
Query: 120 GYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF 179
G FV L K S L +E + G YT+ + R+ + + A L+
Sbjct: 581 GTLFVALNKANRSEKVLQIE-----KSSRARGILFDDVAYTETLLACSRLKDWETALFLY 635
Query: 180 AEAANKHLKTIGTYNA-LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238
+ L+ T LL A +G D+ +F +L+++ P++ YN LI + R
Sbjct: 636 EGMKKRRLRLTNTMVINLLSAVGRSGKLDRLHKVFLELQQQIGFVPTLQMYNILIDSYSR 695
Query: 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298
L IK L PN TY +++ +W EIY + A + PD N
Sbjct: 696 GLKWRKCLEVLGCIKKDILEPNWKTYEPILSCLSQLELWETYLEIYGEVLAQGMEPDYNI 755
Query: 299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
+ + Y G ME+ L + + G
Sbjct: 756 LKISVTAYTSLG----MEEEASLTEARLQG 781
>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
Length = 1048
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 56/256 (21%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPR------------------LALEVLNWRRRQAGYG 151
G CL R + ++ V LM + G P +ALE+LN ++
Sbjct: 150 GFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGA 209
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQ 210
+T G+ ++GR ++ AA + + + + + T+ AL+ ++ G D+ Q
Sbjct: 210 DVVTYNTLLTGLCYSGRWSD---AARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQ 266
Query: 211 SLFR----------------------------------DLKKEANISPSIVTYNTLISVF 236
L++ DL P++VTYNTLIS F
Sbjct: 267 ELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGF 326
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
+ +VD FQ + + ++FTYN LI GY +I+ M + V PD
Sbjct: 327 CKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDI 386
Query: 297 NTYLLLLRGYAHSGNL 312
T+ +LL G +G +
Sbjct: 387 ITHCILLHGLCVNGEI 402
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 7/195 (3%)
Query: 175 AADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +L+ E + + + TYN+L+ + +G + +F DL P +VTYNTLI
Sbjct: 798 ARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMF-DLMVSKGCFPDVVTYNTLI 856
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F + V+ F E+ L + FTYN LI GY A ++++ M V
Sbjct: 857 TGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVS 916
Query: 294 PDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352
PD TY +LL ++G + + + + +L K +D +I I C TD++K+
Sbjct: 917 PDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMD---VDIITYNIIIQGLCR-TDKLKE 972
Query: 353 IEALMRLIPEKEYRP 367
L R + K +P
Sbjct: 973 AWCLFRSLTRKGVKP 987
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 189 TIGTYNALL-GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+I T+ +LL G + N + D + L ++ P++V YNTLI + ++
Sbjct: 140 SIVTFGSLLHGFCLVNRIGDAFSLVI--LMVKSGYEPNVVVYNTLIDGLCKNGELNIALE 197
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
E++ L +V TYN L+ G + W + + M + PD T+ L+ +
Sbjct: 198 LLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFV 257
Query: 308 HSGNLPRMEKIY-ELVKHHVD 327
GNL +++Y E+++ VD
Sbjct: 258 KQGNLDEAQELYKEMIQSSVD 278
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 9/194 (4%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG 191
SR AL VL + + +T G RI + L ++ + +
Sbjct: 120 SRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSG--YEPNVV 177
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLLLVDHMEAA 248
YN L+ NG + L +++K+ + +VTYNTL++ GR M
Sbjct: 178 VYNTLIDGLCKNGELNIALELLNEMEKKG-LGADVVTYNTLLTGLCYSGRWSDAARM--- 233
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+++ +++P+V T+ LI ++ + +E+Y+ M V P+ TY ++ G
Sbjct: 234 LRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCM 293
Query: 309 SGNLPRMEKIYELV 322
G L +K ++L+
Sbjct: 294 HGRLYDAKKTFDLM 307
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 5/164 (3%)
Query: 147 QAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGL 205
Q G T G AG++N +A +F + + I TYN LL NG
Sbjct: 878 QGLVGDAFTYNTLIHGYCQAGKLN---VAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGK 934
Query: 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
+K + DL+K + + I+TYN +I R + F+ + + P+ Y
Sbjct: 935 IEKALVMVEDLQK-SEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYI 993
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+I+G + + +++ + MK MP Y LR + S
Sbjct: 994 TMISGLCRKGLQREADKLCRRMKEDGFMPSERIYDETLRDHYTS 1037
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 19/211 (9%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218
+ +G +F ++ VD + D F N + YN ++ N + +F ++K
Sbjct: 684 FCQGNRFQEAVSLVD-SMDGFGFVPN-----VVIYNTVINGLCKNRDLNNALEVFYCMEK 737
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
+ I VTYNTLIS +++ + PNV + LI ++
Sbjct: 738 KG-IRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLL 796
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI---R 335
+ +Y+ M V+P+ TY L+ G+ G L + +++L+ V FP +
Sbjct: 797 EARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLM---VSKGCFPDVVTYN 853
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
+I + K K++E M+L E Y+
Sbjct: 854 TLITGFCKS------KRVEDGMKLFCEMTYQ 878
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 28/210 (13%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C+ R + +LM G P V+ + +G+ +E G+K R+
Sbjct: 290 GLCMHGRLYDAKKTFDLMASKGCFP----NVVTYNTLISGFCKFRMVDE---GMKLFQRM 342
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
+ AD+F TYN L+ Y G +F + ++P I+T+
Sbjct: 343 SCEGFNADIF------------TYNTLIHGYCQVGKLRVALDIFCWMVSR-RVTPDIITH 389
Query: 230 NTLISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
L+ L + +E+A F ++++S + YN +I G A K E++
Sbjct: 390 CILLH---GLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCR 446
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
+ V PD TY +++ G +G PR E
Sbjct: 447 LPVEGVKPDARTYTIMILGLCKNG--PRRE 474
>gi|356528212|ref|XP_003532699.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37230-like [Glycine max]
Length = 738
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 122/277 (44%), Gaps = 7/277 (2%)
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
AFV L+ G R + E + ++ G T + Y K R +A +
Sbjct: 159 AFVSLIDSYG-RAGIVQESVKLFKKMKELGVDRTVKSYDALFKVILRRGRYMMAKRYYNA 217
Query: 182 AANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
N+ ++ T TYN LL + D + D+K I P +VTYNTLI+ + R
Sbjct: 218 MLNESVEPTRHTYNILLWGMFLSLRLDTAVRFYEDMKSRG-ILPDVVTYNTLINGYFRFK 276
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
V+ E F E+K ++ PNV ++ ++ GY+ A ++++ MK V P+ T+
Sbjct: 277 KVEEAEKLFVEMKGRDIVPNVISFTTMLKGYVAAGQIDDALKVFEEMKGCGVKPNAVTFS 336
Query: 301 LLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMR 358
LL G + + + E+V+ ++ K+ + ++ K D + +A++R
Sbjct: 337 TLLPGLCDAEKMAEARDVLGEMVERYIAPKDNAVFMKLMSCQCKAGDLDAAGDVLKAMIR 396
Query: 359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE 395
L E + +LI + K + ++ EK ++ E
Sbjct: 397 LSIPTEAGHY--GVLIENFCKANLYDKAEKLLDKMIE 431
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 93/408 (22%), Positives = 161/408 (39%), Gaps = 30/408 (7%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C + N Y +M Q G + R + Y G+ AGRI
Sbjct: 238 GHCRNKGVDNAYEVFLIMPQKGCQ-----------RNEVSY------TNLIHGLCEAGRI 280
Query: 170 NNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
N A LFA+ + T+ TY L+ A +G + +LF ++K E P++ T
Sbjct: 281 NE---ALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMK-EKGCEPNVHT 336
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y LI + +D E+ + L P+V TYN LI GY M EI +M+
Sbjct: 337 YTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLME 396
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP-LIRAMICAYSKCSVT 347
+ P+T TY L+ G ++ K L+ ++ K P LI + +C V
Sbjct: 397 SNSCGPNTRTYNELICGLCKK---RKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVN 453
Query: 348 DRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRI 405
D ++ L+ L+ E P W + I KE +EE ++ D+ + K I
Sbjct: 454 D-LESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEE-AGTLFDSVKAKGVKANEVI 511
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
++ Y + +D + ++R + Y+ + +++++E S++ +M
Sbjct: 512 YTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKML 571
Query: 466 NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
+ + T+ I+ G +V M GY V + +
Sbjct: 572 TMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTA 619
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 92/413 (22%), Positives = 157/413 (38%), Gaps = 18/413 (4%)
Query: 96 VDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMT 155
+++ K+F + E C R + L+ L R +E LN G
Sbjct: 280 INEALKLFADMTEDNCCPTVR-----TYTVLIYALSGSGR-KVEALNLFNEMKEKGCEPN 333
Query: 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFR 214
YT I + N +D A + +E + K L ++ TYNAL+ Y G+ D +
Sbjct: 334 VHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEIL- 392
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
DL + + P+ TYN LI + V A ++ + LSP++ TYN LI G
Sbjct: 393 DLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKV 452
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
+ +M ++PD TY + + G + +++ VK +
Sbjct: 453 NDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIY 512
Query: 335 RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSIND 392
A+I Y K +I +L+ + P + +LI KE ++E +
Sbjct: 513 TALIDGYCK---VGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAK 569
Query: 393 AFEH--KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450
K +V T I+ + + A D S G++ Y + + Y S
Sbjct: 570 MLTMGVKPTVVTYTIL---IGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFS 626
Query: 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
Q +EE++ V+ +M I T+ ++ YA G + L M G
Sbjct: 627 QGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTG 679
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 141/333 (42%), Gaps = 47/333 (14%)
Query: 212 LFRDLKK--EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+FR + E P++ YNT++ + LL+D M+ + E+ ++ +SPN++T+N ++
Sbjct: 143 VFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVN 202
Query: 270 GYMTAWMWGKVE-EIY--QMMKAGPVMPDTNTYLLLLRGYAHSG---------------- 310
GY + VE E+Y ++++AG + PDT TY L+ G+ +
Sbjct: 203 GY--CKIGNVVEAELYASKIVQAG-LHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKG 259
Query: 311 -------------NLPRMEKIYELVKHHVDGKE---FPLIRAMICAYSKCSVTDRIKKIE 354
L +I E +K D E P +R S + R K+E
Sbjct: 260 CQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGR--KVE 317
Query: 355 A--LMRLIPEKEYRPWLN--VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV 410
A L + EK P ++ +LI KE+ ++E K +++ E K + +V ++
Sbjct: 318 ALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSE-KGLIPSVVTYNALI 376
Query: 411 SSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID 470
Y + +D + ES Y+ + +R+V + ++L +M K+
Sbjct: 377 DGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLS 436
Query: 471 CSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
S T+ + + ++L LM +NG
Sbjct: 437 PSLITYNSLIHGQCKVNDLESAYRLLSLMNENG 469
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 91/411 (22%), Positives = 159/411 (38%), Gaps = 54/411 (13%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRP-----RLALEVL--NWRRRQAGY--------GTPM 154
G C + Y + LM + G P + ++ L R +AG G
Sbjct: 448 GQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKA 507
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLF 213
+ YT I ++ +D+A L N L TYN L+ + SL
Sbjct: 508 NEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLV 567
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+ + P++VTY LI + DH F + P+V TY + Y +
Sbjct: 568 AKMLT-MGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFS 626
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
M +V+++ M ++PD TY +L+ GYA G R ++ +K VD
Sbjct: 627 QGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRA---FDFLKCMVDTG---- 679
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI-RVYAKEDCLEEMEKSIND 392
C S V+ IK + R+ KE R + + + E L+ EK +
Sbjct: 680 -----CKPSLYIVSILIKNLSHENRM---KETRSEIGIDSVSNTLEYEIALKLFEKMV-- 729
Query: 393 AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS------KMV 446
EH ++ V I +++ + + +++ V + G +Y+S K+
Sbjct: 730 --EHGCTI-DVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLG 786
Query: 447 MYA-SQRRVEEM--ESVLKEMENYK-------IDCSKKTFWIMYYAYATCG 487
+YA + R V+ M +L +E+YK I+ S + +++ +CG
Sbjct: 787 VYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCG 837
>gi|255542890|ref|XP_002512508.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548469|gb|EEF49960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 444
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 4/159 (2%)
Query: 157 EEYTKGIKFAGRIN--NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLF 213
E T I G N NV +A +FAE + +K + TYN+L+ NG ++ +L
Sbjct: 214 NEVTFNILIDGFCNDKNVSVAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTL- 272
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
RD + + P+I+T+N L++ F + +V F+++ ++PNV TYN LI Y
Sbjct: 273 RDQMVNSCLEPNIITHNALLNGFCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCK 332
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+Y++M V PD +TY L+ G G+L
Sbjct: 333 DENMEDAFALYRIMLGKGVYPDVSTYNCLIVGLCRKGDL 371
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 48/217 (22%)
Query: 136 LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYN 194
+A++V RQ +T G+ G++N A L + N L+ I T+N
Sbjct: 233 VAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNE---ATTLRDQMVNSCLEPNIITHN 289
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK- 253
ALL + N + + LF D+ K+ I+P++ TYN LI + + ++ME AF +
Sbjct: 290 ALLNGFCKNKMVKQAGELFEDMPKQ-RITPNVTTYNILIDAYCK---DENMEDAFALYRI 345
Query: 254 --DSNLSPNVFTYNYLIAGYM------------------------------------TAW 275
+ P+V TYN LI G
Sbjct: 346 MLGKGVYPDVSTYNCLIVGLCRKGDLEGARNRVSEMDTKHLKADLITYNILMDSLCNKGE 405
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
M + + +M K G + P TY ++ GY+ GNL
Sbjct: 406 MKKTLRLLDEMCKKG-LKPSQLTYNTMIDGYSKEGNL 441
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 91/214 (42%), Gaps = 15/214 (7%)
Query: 174 LAADLFAEAANKHLK-TIGTYNALLGAY--MYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
L + F A++ LK ++ + N L+ MY K ++ +++K + I P+ VT+N
Sbjct: 166 LGFEAFKRASDYGLKLSVTSCNPLMSGLVKMY-----KADAILKEMKADG-ICPNEVTFN 219
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
LI F V F E+ + PNV TYN LI G + + M
Sbjct: 220 ILIDGFCNDKNVSVAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTLRDQMVNS 279
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI 350
+ P+ T+ LL G+ + + + +++E + +I AY K + +
Sbjct: 280 CLEPNIITHNALLNGFCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCK---DENM 336
Query: 351 KKIEALMRLIPEKEYRPWL---NVLLIRVYAKED 381
+ AL R++ K P + N L++ + K D
Sbjct: 337 EDAFALYRIMLGKGVYPDVSTYNCLIVGLCRKGD 370
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 110/287 (38%), Gaps = 56/287 (19%)
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
S+ + N L+S ++ D A +E+K + PN T+N LI G+ +++
Sbjct: 182 SVTSCNPLMSGLVKMYKAD---AILKEMKADGICPNEVTFNILIDGFCNDKNVSVAMKVF 238
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC 344
M V P+ TY L+ G ++G + + + + + A++ + K
Sbjct: 239 AEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNGFCK- 297
Query: 345 SVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFE------H 396
+K+ L +P++ P + +LI Y K++ +E DAF
Sbjct: 298 --NKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCKDENME-------DAFALYRIMLG 348
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
K V C++ LCR K + ++ RV E
Sbjct: 349 KGVYPDVSTYNCLIVG-----------------------LCR-----KGDLEGARNRVSE 380
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
M++ ++ K D T+ I+ + G+ +K ++L MCK G
Sbjct: 381 MDT-----KHLKADLI--TYNILMDSLCNKGEMKKTLRLLDEMCKKG 420
>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic [Vitis vinifera]
Length = 701
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/307 (24%), Positives = 138/307 (44%), Gaps = 18/307 (5%)
Query: 95 NVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPM 154
N+D +K+F + E+G + + ++ + ++ S P A+E W + +G
Sbjct: 191 NLDRAEKLFDEMLERG---VKPDNITFSTIISCARVSSLPNKAVE---WFEKMPEFGCHP 244
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLF 213
Y+ I GR NVD+A L+ A + + T++ L+ Y +G D C +++
Sbjct: 245 DDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVY 304
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
++K + P++V YNTL+ GR + ++E+ ++ L P+ TY L+ Y
Sbjct: 305 EEMKA-LGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGR 363
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP- 332
A +Y+ MK + Y LL A G I+E +K G P
Sbjct: 364 ARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKS--SGNCMPD 421
Query: 333 --LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEK 388
++I YS CS ++ + EA++ + E + P + VL LI+ Y K + +E+ +
Sbjct: 422 SWTFSSLITIYS-CS--GKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVR 478
Query: 389 SINDAFE 395
+ + E
Sbjct: 479 TFDRLLE 485
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 16/187 (8%)
Query: 125 ELMKQLGSRPRLAL---------------EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
E MK LG +P L + + N + G + Y ++ GR
Sbjct: 305 EEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRA 364
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ A ++ E K L+ ++ YN LL G +++ ++F D+K N P T
Sbjct: 365 RYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWT 424
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
+++LI+++ V EA + ++ PN+F LI Y A +V + +
Sbjct: 425 FSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLL 484
Query: 289 AGPVMPD 295
+ PD
Sbjct: 485 ELDITPD 491
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 127/304 (41%), Gaps = 23/304 (7%)
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
F +K S ++ YN + VF + +D E F E+ + + P+ T++ +I+
Sbjct: 163 FGFFRKRLKPSREVILYNVTLKVFRKCRNLDRAEKLFDEMLERGVKPDNITFSTIISCAR 222
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV---KHHVDGK 329
+ + K E ++ M PD TY ++ Y +GN+ K+Y+ K +D
Sbjct: 223 VSSLPNKAVEWFEKMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPV 282
Query: 330 EFP-LIR--AMICAYSKC-SVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCL 383
F LIR M + C +V + +K + L+ Y L+ + R + ++
Sbjct: 283 TFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVI---YNTLLDAMGRAKRPWQAKNIY 339
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
+EM N+ + T ++R +Y R + K + G L LY++
Sbjct: 340 KEM---TNNGLQPSWG-TYAALLR----AYGRARYAEDALIVYKEMKEKGLELSVVLYNT 391
Query: 444 KMVMYASQRRVEEMESVLKEMENYKIDCSKK--TFWIMYYAYATCGQRRKVNQVLGLMCK 501
+ M A EE ++ ++M++ +C TF + Y+ G+ + +L M +
Sbjct: 392 LLAMCADVGYTEEAAAIFEDMKSSG-NCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLE 450
Query: 502 NGYD 505
G++
Sbjct: 451 AGFE 454
>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like, partial [Cucumis sativus]
Length = 594
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 133/308 (43%), Gaps = 17/308 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+ +++ Y G + C+++F + E I P+IV+YN LIS + + + F E
Sbjct: 114 TFTSIIHLYSVRGQIEDCKAVFSTMLAEG-IKPNIVSYNALISAYASHGMDKEAFSVFDE 172
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S P+V +Y LI+ + + + E++ MMK P+ +Y L+ Y +G
Sbjct: 173 MKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGY 232
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP-WLN 370
LP+ I L + DG P + ++ + C + I++++ E R LN
Sbjct: 233 LPQAVDI--LREMEQDGIH-PNVVSICTLLAACGRFGQKVNIDSVL---SAAELRGIHLN 286
Query: 371 VL----LIRVYAKEDCLEEMEKSIN--DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
+ I Y + E EK+IN + E+KT+ ++S R + ++
Sbjct: 287 TIACNSAIGSYMN---IGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALC 343
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
F K L +Y S + Y+ Q ++ + ES+ ++ T+ M AY+
Sbjct: 344 FFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYS 403
Query: 485 TCGQRRKV 492
KV
Sbjct: 404 ASEMWEKV 411
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 10/190 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAA-NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I GR A ++F NK + +YNAL+ AY NG + + R+++
Sbjct: 185 YTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREME 244
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ I P++V+ TL++ GR ++++ + + N N I YM +
Sbjct: 245 QDG-IHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEY 303
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL---- 333
K +Y+ M+ PD+ T+ +L+ G + + E+ K +D + PL
Sbjct: 304 EKAINLYRSMENKTTKPDSVTFTILISGCCR---MSKYEEALCFFKEMLDLR-IPLSSEI 359
Query: 334 IRAMICAYSK 343
+MICAYSK
Sbjct: 360 YSSMICAYSK 369
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I +YNAL+ AY +G+ + S+F ++K+ + P +V+Y +LIS FGR F
Sbjct: 147 IVSYNALISAYASHGMDKEAFSVFDEMKR-SGFCPDVVSYTSLISTFGRSQQPARAREVF 205
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+K + PN+ +YN L+ Y + + +I + M+ + P+ + LL
Sbjct: 206 DMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRF 265
Query: 310 GNLPRMEKI 318
G ++ +
Sbjct: 266 GQKVNIDSV 274
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 54/109 (49%)
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
+K + P +VT+ ++I ++ ++ +A F + + PN+ +YN LI+ Y + M
Sbjct: 103 EKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGM 162
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
+ ++ MK PD +Y L+ + S R ++++++K +
Sbjct: 163 DKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRN 211
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 85/220 (38%), Gaps = 48/220 (21%)
Query: 180 AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR- 238
AE HL TI N+ +G+YM G +K +L+R ++ + P VT+ LIS R
Sbjct: 278 AELRGIHLNTIAC-NSAIGSYMNIGEYEKAINLYRSMENKTT-KPDSVTFTILISGCCRM 335
Query: 239 ------LLLVDHM----------------------------EAAFQEIKDSNLSPNVFTY 264
L M E+ F +K S P++ TY
Sbjct: 336 SKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTY 395
Query: 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
+I Y + MW KV +YQ M+A + D+ L++ + + + E++K
Sbjct: 396 TAMINAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAFNKGNQASNVLILAEIMKE 455
Query: 325 HV----DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI 360
D F ++ A CS+ +K L+ L+
Sbjct: 456 KGIPFNDANFFEMLSA-------CSILRDWRKATDLINLM 488
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 56/293 (19%), Positives = 116/293 (39%), Gaps = 36/293 (12%)
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
I PS T+N LI+ G +++ D+ + P++ T+N +++ Y + + K
Sbjct: 1 IPPSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKAL 60
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAY 341
+++MK + PDT T ++ I+ L+K G+ + +M
Sbjct: 61 SYFELMKGTNIRPDTTTLNIV---------------IHCLIKVKQYGQAIEIFSSMREKR 105
Query: 342 SKC--------------SVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCL 383
S+C SV +I+ +A+ + + +P N++ LI YA +
Sbjct: 106 SECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKP--NIVSYNALISAYASHG-M 162
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
++ S+ D + V ++S++ R + + + Y++
Sbjct: 163 DKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNA 222
Query: 444 KMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
M Y S + + +L+EME I + + + A GQ+ ++ VL
Sbjct: 223 LMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVL 275
>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
Length = 468
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 98/234 (41%), Gaps = 6/234 (2%)
Query: 93 LANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRL--ALEVLNWRRRQAGY 150
LA + LD+ ++L E N F L+ L L ALEV
Sbjct: 196 LAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEA--- 252
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKC 209
G K YT I R V A +LF + + YN+L+ Y G D+
Sbjct: 253 GCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEA 312
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+ L+R++ A + P+IVT+NTLI F +L + E+ L+ + TY LIA
Sbjct: 313 EKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIA 372
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
G A + E+Y+ M+ + D + + + G +GN+ + ++E +
Sbjct: 373 GLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATR 426
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 11/140 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ + G K LF+ +K+E + P TYNTLIS + E
Sbjct: 47 TYNVLINSRCNAGEFGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSE 106
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY----QMMKAGPVMPDTNTYLLLLRGYA 307
++D N++ NVFTY+ +I + K EE Y +MM AG PD + +++G+A
Sbjct: 107 MRDKNIAANVFTYSSIIKSLVK---EAKPEESYKVLEEMMAAG-CNPDVFAFNGVMQGFA 162
Query: 308 HSGNLPRMEKIYELVKHHVD 327
S N MEK E+ +H V+
Sbjct: 163 RSNN---MEKAREVYQHMVE 179
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 63/127 (49%), Gaps = 1/127 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ +G ++ + L +++ + NI+ ++ TY+++I + + +E
Sbjct: 83 TYNTLISGLCSSGNTEGARKLLSEMR-DKNIAANVFTYSSIIKSLVKEAKPEESYKVLEE 141
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + +P+VF +N ++ G+ + K E+YQ M PD +Y +L+ G A G
Sbjct: 142 MMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGK 201
Query: 312 LPRMEKI 318
L KI
Sbjct: 202 LDESLKI 208
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y+ ++ + ++ F+ +K + P++ TYN LI A +GK +++Q MK
Sbjct: 13 YDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSMK 72
Query: 289 -AGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
V PD TY L+ G SGN K+
Sbjct: 73 REKRVEPDRWTYNTLISGLCSSGNTEGARKL 103
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/163 (19%), Positives = 69/163 (42%), Gaps = 3/163 (1%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N ++ + + +K + +++ + E+ P V+Y+ LI ++ +D E+
Sbjct: 154 FNGVMQGFARSNNMEKAREVYQHMV-ESGYKPDNVSYHILIHGLAKIGKLDESLKILSEM 212
Query: 253 --KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + PNV T++ LI G K E++ M P+ TY L+ G +
Sbjct: 213 AMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAE 272
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
+ + +++E + + ++I Y K D +K+
Sbjct: 273 KVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKL 315
>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
Length = 1202
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 117/263 (44%), Gaps = 10/263 (3%)
Query: 175 AADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A LF E A + L ++ TYN L+ Y +G +K + R+ K NI PS++T+NTL+
Sbjct: 606 AEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKV-RERMKADNIEPSLITFNTLL 664
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ +V+ E E+KD P+ FT++ L GY + +Y+ +
Sbjct: 665 KGLFKAGMVEDAENVLTEMKDQGFVPDAFTFSILFDGYSSNDKADAALGVYETAVDSGLK 724
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIY--ELVKHHVDGKEFPLIRAMICAYS-KCSVTDRI 350
+ T +LL G + + E+I E+ K V + L MI YS K +
Sbjct: 725 MNAYTCSILLNALCKEGQIEKAEEILGREMAKGLVPNE--VLYNTMIDGYSRKGDLVGAR 782
Query: 351 KKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV 410
KI+A+ + + ++ + LIR + + +E E+ +N + K +V ++
Sbjct: 783 MKIDAMEKQGMKPDHLAY--NCLIRTFCELGDMENAEQEVN-KMKLKGVSPSVETYNILI 839
Query: 411 SSYFRCNAVDKLANFVKRAESAG 433
Y R DK + +K E G
Sbjct: 840 GGYGRKYEFDKCFDLLKEMEDNG 862
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 136/298 (45%), Gaps = 21/298 (7%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ TYN L+G Y DKC L ++++ + P++V+Y TLI+ + + +
Sbjct: 831 SVETYNILIGGYGRKYEFDKCFDLLKEMEDNGTM-PNVVSYGTLINCLCKGSKLLEAQIV 889
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY----QMMKAGPVMPDTNTYLLLLR 304
++++D +SPNV YN LI G + GK+E+ + +M K G + + TY L+
Sbjct: 890 KRDMEDRGVSPNVRIYNMLIDGCCSK---GKIEDAFRFSEEMFKKG-IELNLVTYNTLID 945
Query: 305 GYAHSGNLPRMEK-IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
G + +G L E + E+ + + F ++I Y +++ AL +
Sbjct: 946 GLSMNGKLAEAEDMLLEISRKGLKPDVFTY-NSLISGYR---FAGNVQRCIALYEEMKTS 1001
Query: 364 EYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
+P L LLI + KE E+ K I F + + + ++ Y +DK
Sbjct: 1002 GIKPTLKTYHLLISLCTKEGI--ELTKKI---FGEMSLQPDLLVYNGVLHCYAVHGDMDK 1056
Query: 422 LANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
N K+ L ++ Y+S ++ ++ E+ S++ EM+ +++ T+ I+
Sbjct: 1057 AFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMKAREMEPEADTYDII 1114
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 36/179 (20%)
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G+ G++ A D+ E + K LK + TYN+L+ Y + G +C +L+ ++K +
Sbjct: 946 GLSMNGKLAE---AEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMKT-S 1001
Query: 221 NISPSIVTYNTLIS------------VFGRL-----LLV-----------DHMEAAF--- 249
I P++ TY+ LIS +FG + LLV M+ AF
Sbjct: 1002 GIKPTLKTYHLLISLCTKEGIELTKKIFGEMSLQPDLLVYNGVLHCYAVHGDMDKAFNLQ 1061
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+++ + ++ + TYN LI G + +V + MKA + P+ +TY ++++G+
Sbjct: 1062 KQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMKAREMEPEADTYDIIVKGHCE 1120
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 205 LSD--KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF 262
LSD K LF +K + ISP++ YN LI ++ + E F E+ L P++
Sbjct: 565 LSDVGKGLELFNRMKHD-RISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLI 623
Query: 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
TYN LI GY K ++ + MKA + P T+ LL+G +G + E +
Sbjct: 624 TYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENV 679
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E++ PS Y I +L V F +K +SP VF YN LI G
Sbjct: 545 ESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQMK 604
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
E+++ M A ++P TY L+ GY GN + K+ E +K
Sbjct: 605 DAEQLFDEMLARRLLPSLITYNTLIDGYCKDGNPEKSFKVRERMK 649
>gi|147778634|emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
Length = 1494
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 134/318 (42%), Gaps = 45/318 (14%)
Query: 79 KDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG-SRPRLA 137
KD Q V L D +L + + V VLD++ + + FV +K +G S + A
Sbjct: 150 KDWRQRVQFLTDRILG-LKSEEFVADVLDDRK---VQMTPTDFCFV--VKWVGQSSWQRA 203
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALL 197
LEV W + Y +P + T + G+ N LA ++FA A T+ YNA++
Sbjct: 204 LEVYEWLNLRHWY-SPNARMLATI-LSVLGKANQEALAVEIFARAEAAXGNTVQVYNAMM 261
Query: 198 GAYMYNGLSDKCQSLFRDLK------------------------------------KEAN 221
G Y G K Q L ++ + +
Sbjct: 262 GVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSG 321
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
I P I+TYNTLIS R ++ + ++ P+++TYN +I+ Y M +
Sbjct: 322 IQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAG 381
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAY 341
+++ +++ +PD TY LL +A GN+ ++++I E + GK+ +I Y
Sbjct: 382 RLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMY 441
Query: 342 SKCSVTDRIKKIEALMRL 359
K D ++ + M+L
Sbjct: 442 GKRGQHDLAFQLYSDMKL 459
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/307 (25%), Positives = 130/307 (42%), Gaps = 14/307 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I GR A LF + +K L TYN+LL A+ G DK + + D+
Sbjct: 364 YNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMV 423
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K +TYNT+I ++G+ D + ++K S SP+ TY LI A M
Sbjct: 424 K-MGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMI 482
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHV--DGKEFPLI 334
+ E+ M V P T+ L+ GYA +G E+ ++ +++ + D + ++
Sbjct: 483 KEAAEVMSEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVM 542
Query: 335 RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAF 394
++ +++ ++ + L P+ L +++RV KE+ E++ K + D
Sbjct: 543 LDILLRFNESGKAMKLYQEMVLHSFKPDHA----LYEVMLRVLGKENREEDVHKVVKDME 598
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454
E + V I S + D AN ++ A S G L R S + Y S R
Sbjct: 599 ELCGMNSQV-----ICSILVKGECFDHAANMLRLAISQGCELDRENLLSILGSYGSSGRH 653
Query: 455 EEMESVL 461
E +L
Sbjct: 654 LEARELL 660
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 14/184 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ Y + ++ SL ++++ + P + TY +LIS FG+L +V+ E F+
Sbjct: 991 TYNTLILMYCRDRRPEEGLSLMHEMRR-VGLEPKLDTYKSLISAFGKLQMVEQAEELFEG 1049
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + Y+ ++ + + K E++ +MK V P T LL+ Y+ SG
Sbjct: 1050 LLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQ 1109
Query: 312 LPRMEKIYELVKHHVDGKEFPL----IRAMICAYSKCSVTDRIKKIEALMRLIP---EKE 364
EK+ + +K V+G PL ++I AY K D I+ LM + E +
Sbjct: 1110 PEEAEKVLDNLK--VEG--LPLSTLPYSSVIDAYLKNG--DHNVAIQKLMEMKKDGLEPD 1163
Query: 365 YRPW 368
+R W
Sbjct: 1164 HRIW 1167
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 76/359 (21%), Positives = 149/359 (41%), Gaps = 20/359 (5%)
Query: 7 LSDAAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLL 66
+ A + LL + H+ + L ++ +S S R C V+ L+
Sbjct: 766 IDQAEEKGLLFDDVSIHTGVIEAYGKLKLWQKAESLVGSL-RQKCTMVDRKVWNALIHAY 824
Query: 67 SETLTYPDAR------VRKDLTQTVSALRDELLANVDD--LDKVFRVLDEKGSCLFRRHS 118
+ + Y AR +R + TV ++ + A + D LD+++ V+ E F+
Sbjct: 825 AASGCYERARAIFNTMMRDGPSPTVDSVNGLMQALIVDGRLDELYVVIQELQDMGFKISK 884
Query: 119 NGYAFVELMKQLGSRPRLALEV--LNWRRRQAGYGTPMTKEEYTKGIKFAG-RINNVDLA 175
+ + LM + EV + + AGY M G+ G R+ +V+
Sbjct: 885 SS---ITLMLDAFAHAGNIFEVKKIYQGMKAAGYFPTMHLYRIMIGLLAKGKRVRDVEAM 941
Query: 176 ADLFAEAANKHLKTIGTYNALLGAYMYNGLSD-KCQSLFRDLKKEANISPSIVTYNTLIS 234
A K + +N++L +Y G+ D K L +EA + P TYNTLI
Sbjct: 942 VSEMEVAXFK--PDLSIWNSVLK--LYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLIL 997
Query: 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294
++ R + + E++ L P + TY LI+ + M + EE+++ + +
Sbjct: 998 MYCRDRRPEEGLSLMHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKL 1057
Query: 295 DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
D + Y ++++ + +SGN + EK+ ++K + ++ +YS + +K+
Sbjct: 1058 DRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKV 1116
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 106/284 (37%), Gaps = 42/284 (14%)
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEI---KDSNLSPNVFTYNYLIAGYMTAWMWGK 279
SP+ T++SV G+ + EA EI ++ V YN ++ Y + K
Sbjct: 217 SPNARMLATILSVLGKA----NQEALAVEIFARAEAAXGNTVQVYNAMMGVYARTGRFTK 272
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
V+E+ +M++ PD ++ L+ SG + I L + G I+ I
Sbjct: 273 VQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSG-----IQPDII 327
Query: 340 AYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS 399
Y+ LI ++E LEE K ND H+
Sbjct: 328 TYNT-----------------------------LISACSRESNLEEAVKVYNDMVAHRCQ 358
Query: 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES 459
+ ++S Y RC + K ES G+ Y+S + +A + V++++
Sbjct: 359 -PDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKE 417
Query: 460 VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ ++M + T+ + + Y GQ Q+ M +G
Sbjct: 418 ICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSG 461
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/325 (21%), Positives = 140/325 (43%), Gaps = 16/325 (4%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y L+ Y NG+ + + RD E + +V YNT+++ + L+ A F E+
Sbjct: 363 YTILINGYCRNGMMSEALEI-RDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEM 421
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ + P+ T+ LI G+ GK ++ +M + PD TY +L+ G+ +
Sbjct: 422 VERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKT--- 478
Query: 313 PRMEKIYELVKHHVDGKEFP-LIRAMICAYSKCS---VTDRIKKIEALMRLIPEKEYRPW 368
MEK EL + K FP I I C+ V++ + + ++R K +P
Sbjct: 479 TEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIR----KGIKPT 534
Query: 369 LNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L +I+ Y + L + ++ + ++ +++ + + +DK +
Sbjct: 535 LVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSI-TYNTLINGFVKGEYMDKAFFLI 593
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
+ E+ G + Y+ + + Q R++E E +L++M ID + T+ + Y +
Sbjct: 594 NKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQ 653
Query: 487 GQRRKVNQVLGLMCKNGYDVPVNAF 511
++ + M + G+ VP + F
Sbjct: 654 DNLKEAFRFHDEMLQRGF-VPDDDF 677
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 2/154 (1%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
VDLA +++ E A ++ + T N ++ A + D + D++++ I IVTYN
Sbjct: 166 VDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKG-IFADIVTYN 224
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
TLI+ + R L+ + L P +FTYN +I G + + + ++ M +
Sbjct: 225 TLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSI 284
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
+ PDT TY LL + N + I+ + H
Sbjct: 285 GLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLH 318
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
V A L+ E K +K T+ T N ++ Y +G K + E + P +TYN
Sbjct: 516 VSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEG-VGPDSITYN 574
Query: 231 TLISVFGRLLLVDHMEAAF---QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TLI+ F + ++M+ AF +++ L P+V TYN ++ G+ + E I + M
Sbjct: 575 TLINGFVK---GEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKM 631
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNL 312
+ PD +TY L+ GY NL
Sbjct: 632 IERGIDPDRSTYTTLINGYVSQDNL 656
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+ L+ + G K SLF + + NI P IVTYN LI F + ++ + E
Sbjct: 432 TFTTLIHGHCKEGNMGKALSLF-GIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNE 490
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + PN +Y L+ GY + ++ M + P T +++GY SG+
Sbjct: 491 MISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGD 550
Query: 312 LPRMEK 317
L + ++
Sbjct: 551 LSKADE 556
>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic [Vitis vinifera]
Length = 867
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 94/408 (23%), Positives = 167/408 (40%), Gaps = 71/408 (17%)
Query: 118 SNGYAFVELMKQLGSRPRLALEVLNW---------RRRQAGYGTPMTKEEYTKGIKFAGR 168
S+ Y F L+++LG+R A + + R Q + M I GR
Sbjct: 148 SDDYTF--LLRELGNRGEWAKAIRCFEFAVRREQRRNEQGKLASAM--------ISILGR 197
Query: 169 INNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+ V+LA ++F A N+ + T+ ++AL+ AY +G D+ +F +K + + P++V
Sbjct: 198 LGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKS-SGLKPNLV 256
Query: 228 TYNTLISVFGRLLLVDHMEAA--FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
TYN +I G+ VD AA F E+ + + P+ T+N L+A +W ++
Sbjct: 257 TYNAVIDACGKGG-VDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFS 315
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
M + D TY LL G +M+ +++
Sbjct: 316 EMLYRGIEQDIFTYNTLLDAVCKGG---QMDLAFQI------------------------ 348
Query: 346 VTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVT 401
M +P K P NV+ +I YAK L+E N+ S+
Sbjct: 349 -----------MSEMPRKHIMP--NVVTYSTVIDGYAKAGRLDEALNLFNEM--KFASIG 393
Query: 402 TVRIM-RCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESV 460
R+ ++S Y + ++ N K ES+G + Y++ + Y Q + EE++ V
Sbjct: 394 LDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRV 453
Query: 461 LKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV 508
+EM+ +I + T+ + Y+ G ++ +V K G V
Sbjct: 454 FEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADV 501
>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
Length = 668
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 102/226 (45%), Gaps = 9/226 (3%)
Query: 145 RRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYN 203
R G + Y I G+ N + A D F + ++ + T+N L+ A+
Sbjct: 393 REMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKG 452
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G D+ LF +++ E+N P TYN +I++ G + +EA E+K+ L PN+ T
Sbjct: 453 GRHDRAMELFEEMR-ESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIIT 511
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
Y L+ Y + + + + + MKA + P Y L+ YA G + + +K
Sbjct: 512 YTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMK 571
Query: 324 HHVDGKEFPL--IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
DG E + + ++I A+ + R+ + ++++ + E RP
Sbjct: 572 --ADGLEVSILVLNSLINAFGE---DRRVVEAFSVLQFMKENGLRP 612
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 79/377 (20%), Positives = 155/377 (41%), Gaps = 18/377 (4%)
Query: 134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE--AANKHLKTIG 191
P ALE+L QA TP + T I G V A LF E A +
Sbjct: 244 PDAALELLA--SAQAIGLTPRSNA-VTALISALGSAGRVAEAEALFLEFFLAGEIKPRTR 300
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YNALL Y+ G + + D + ++P TY+ L+ + R + +E
Sbjct: 301 AYNALLKGYVRIGSLKNAEQVL-DEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKE 359
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + P+ + ++ ++AG+ W K + + M+A V PD + Y +++ +
Sbjct: 360 MEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNC 419
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
L ++ ++ + +I A+ K DR ++ MR E P
Sbjct: 420 LGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMR---ESNCPPGTTT 476
Query: 372 --LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
++I + +++ E +E +++ E V + +V Y R + + ++
Sbjct: 477 YNIMINLLGEQERWEGVEAMLSEMKEQGL-VPNIITYTTLVDVYGRSGRYKEAIDCIEAM 535
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
++ G + ++YH+ + YA + + +V+K M K D + + ++ G+
Sbjct: 536 KADGLKPSPTMYHALVNAYAQRGLADHALNVVKAM---KADGLEVSILVLNSLINAFGED 592
Query: 490 RKVNQ---VLGLMCKNG 503
R+V + VL M +NG
Sbjct: 593 RRVVEAFSVLQFMKENG 609
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 106/470 (22%), Positives = 188/470 (40%), Gaps = 41/470 (8%)
Query: 47 TRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVL 106
TRD P + L+ L E+ PDA + DL +SA L D +L
Sbjct: 203 TRD---PPDAALLERLLGDLRESRLEPDAPLFSDL---ISAFARAALP-----DAALELL 251
Query: 107 DEKGSCLFRRHSNGYAFVELMKQLGSRPRLA-LEVLNWRRRQAGYGTPMTKEEYTKGIKF 165
+ SN A L+ LGS R+A E L AG P T+ Y +K
Sbjct: 252 ASAQAIGLTPRSN--AVTALISALGSAGRVAEAEALFLEFFLAGEIKPRTRA-YNALLKG 308
Query: 166 AGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
RI ++ A + E + + TY+ L+ AY G + + L ++++ + + P
Sbjct: 309 YVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEAD-GVKP 367
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
S ++ +++ F A +E++ S + P+ YN +I + G + +
Sbjct: 368 SSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAF 427
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC 344
M+ + PD T+ L+ + G R ++ EL + + P +
Sbjct: 428 DRMREEEIEPDVVTWNTLIDAHCKGG---RHDRAMELFEEMRESNCPPGTTTYNIMINLL 484
Query: 345 SVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKE-------DCLEEMEKSINDA 393
+R + +EA++ + E+ P N++ L+ VY + DC+E M+ D
Sbjct: 485 GEQERWEGVEAMLSEMKEQGLVP--NIITYTTLVDVYGRSGRYKEAIDCIEAMKA---DG 539
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
K S T + +V++Y + D N VK ++ G + + +S + + RR
Sbjct: 540 L--KPSPT---MYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDRR 594
Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
V E SVL+ M+ + T+ + A Q KV + M +G
Sbjct: 595 VVEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSG 644
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 2/145 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLK 217
YT + GR A D LK T Y+AL+ AY GL+D ++ + +K
Sbjct: 512 YTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMK 571
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + SI+ N+LI+ FG V + Q +K++ L P+V TY L+ + +
Sbjct: 572 AD-GLEVSILVLNSLINAFGEDRRVVEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQF 630
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLL 302
KV IY+ M PD +L
Sbjct: 631 DKVPVIYEEMITSGCAPDRKARAML 655
>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Brachypodium distachyon]
Length = 651
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 99/237 (41%), Gaps = 25/237 (10%)
Query: 88 LRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQ 147
+RDE++A D V G C RR S+ + MK+ G P L
Sbjct: 356 VRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLC---------- 405
Query: 148 AGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLS 206
+T I R N++ A F +++ L+ I TYN L+ G
Sbjct: 406 ----------TFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDL 455
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
K L+ D+ I P+ VTY+ LI VD+ A E+ + + PN+ TYN
Sbjct: 456 GKANELWDDMHSR-EIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNS 514
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+I GY + K ++ M+ VMPD TY L+ GY G +M + + L+K
Sbjct: 515 IIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEG---KMHEAFNLLK 568
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 8/146 (5%)
Query: 170 NNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
VD A E NK + I TYN+++ Y +G K Q ++ + + P ++T
Sbjct: 488 GQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHD-KVMPDLIT 546
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIK---DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
YNTLI + + M AF +K + N+ P+ TYN +I+G+ + + +Y+
Sbjct: 547 YNTLIHGY---VKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYK 603
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGN 311
M A + PD TY+ ++ G+ +GN
Sbjct: 604 KMGARGIEPDRYTYMSMINGHVVAGN 629
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/350 (18%), Positives = 135/350 (38%), Gaps = 40/350 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
++N L+G + G ++ +++++ ++P +V+++ LI +F R +DH +E
Sbjct: 266 SFNMLIGGFCRAGELEEALRFYKEMRGR-RVTPDVVSFSCLIGLFTRRGEMDHAAEYLRE 324
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ L P+ Y +I G+ A + + + M A +PD TY LL G
Sbjct: 325 MREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERR 384
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL-- 369
L E++ +K + +I Y + I+K I ++ RP +
Sbjct: 385 LSDAEELLNEMKERGVPPDLCTFTTLIHGYCR---DGNIEKALQFFDTISDQRLRPDIVT 441
Query: 370 -NVLLIRVYAKEDCLEEME---------------------------KSINDAFE------ 395
N L+ + + D + E +++AF
Sbjct: 442 YNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMV 501
Query: 396 HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVE 455
+K V + I+ Y R V K F+ + Y++ + Y + ++
Sbjct: 502 NKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMH 561
Query: 456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
E ++LK MEN + T+ ++ ++ G ++ + V M G +
Sbjct: 562 EAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIE 611
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 182 AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241
++N + T T N ++ +Y + ++ +++K + P +VT+N ++ R
Sbjct: 152 SSNSEVNTY-TLNIMVHSYCKTLQFGEVDTVISEMEKRC-VFPDVVTHNVMVDARFRAGD 209
Query: 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301
V+ A + + P + TYN ++ G + W K E+++ M A V PD ++ +
Sbjct: 210 VEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNM 269
Query: 302 LLRGYAHSGNLPRMEKIYE 320
L+ G+ +G L + Y+
Sbjct: 270 LIGGFCRAGELEEALRFYK 288
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 121/296 (40%), Gaps = 37/296 (12%)
Query: 6 KLSDAAQTELLLQRLQRHSSKPKTLPP-LSVFTLTKSPNHSFTRDLCAPATHTVFPTLV- 63
+LSDA E LL + K + +PP L FT H + RD F T+
Sbjct: 384 RLSDA---EELLNEM-----KERGVPPDLCTFTTLI---HGYCRDGNIEKALQFFDTISD 432
Query: 64 -RLLSETLTYP---DARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSN 119
RL + +TY D R+ + L D++ + + V + C + N
Sbjct: 433 QRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDN 492
Query: 120 GYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF 179
+AF++ M G P ++ + GY +KG +F ++ + + DL
Sbjct: 493 AFAFLDEMVNKGIVP----NIMTYNSIIKGY---CRSGNVSKGQQFLPKMRHDKVMPDLI 545
Query: 180 AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
TYN L+ Y+ G + +L + ++ E N+ P VTYN +IS F
Sbjct: 546 ------------TYNTLIHGYVKEGKMHEAFNLLKIMENE-NVQPDAVTYNMIISGFSVH 592
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
+ + ++++ + P+ +TY +I G++ A K +++ M + PD
Sbjct: 593 GNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPD 648
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 61/316 (19%), Positives = 122/316 (38%), Gaps = 11/316 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ A G + +L + + I P +VTYN+++ R D F+
Sbjct: 196 THNVMVDARFRAGDVEAAMALIDSMVSKG-IKPGLVTYNSVLKGLLRNGRWDKAREVFRA 254
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ ++P+V ++N LI G+ A + Y+ M+ V PD ++ L+ + G
Sbjct: 255 MDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGE 314
Query: 312 LPR-MEKIYELVKHHV--DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE-KEYRP 367
+ E + E+ + + DG + ++ C R++ +P+ Y
Sbjct: 315 MDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNT 374
Query: 368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
LN L KE L + E+ +N+ E + ++ Y R ++K F
Sbjct: 375 LLNGL-----CKERRLSDAEELLNEMKERGVP-PDLCTFTTLIHGYCRDGNIEKALQFFD 428
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
R Y++ + Q + + + +M + +I + T+ I+ ++ G
Sbjct: 429 TISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKG 488
Query: 488 QRRKVNQVLGLMCKNG 503
Q L M G
Sbjct: 489 QVDNAFAFLDEMVNKG 504
>gi|449502417|ref|XP_004161634.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15980-like [Cucumis sativus]
Length = 499
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 114/263 (43%), Gaps = 5/263 (1%)
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
C+ +K + +SP++ T+NTL+ F R V ++ + ++ DSN +PN ++Y+ L+
Sbjct: 239 CEIEEEHVKLKGRVSPNVHTFNTLMDCFYRDGFVGRVKEIWDQLADSNSTPNSYSYSILM 298
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
G+ EE+++ MK + PD Y ++ G+ +G+ R E+ Y ++
Sbjct: 299 TVLCEEKRTGEAEELWEEMKMKKLEPDVVAYNTIIGGFCKAGHTHRAEEFYREMELSGIE 358
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEM 386
F + +I Y D + MR K++ + L LIR+ E L E
Sbjct: 359 STFSTLEHLINGYCDTGDVDSALLVYKDMR---RKQFSLNASTLEGLIRMLCAERRLLEA 415
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446
A E+ + T+ +++ + ++ + G++ +Y S +
Sbjct: 416 LDVFGFAIEYSSFCPTMETFEILINELCQEGKIEGAFKLQAQMVGKGFKPNLKIYQSFID 475
Query: 447 MYASQRRVEEMESVLKEMENYKI 469
Y + E +E + KEM ++
Sbjct: 476 AYTKEGNAEMVEKLWKEMHEIQL 498
>gi|255660918|gb|ACU25628.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 484
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP ++TYNT+I+ + R+ +D E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFDDMKSR-EISPDVITYNTMINGYYRVKKMDEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G N
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLC---N 267
Query: 312 LPRMEKIYELVKHHVD 327
+M + ++K VD
Sbjct: 268 AEKMSEARSVLKEMVD 283
>gi|255660904|gb|ACU25621.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 484
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++G
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAGK 270
Query: 312 L 312
+
Sbjct: 271 M 271
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+TI +YNAL A + G + F + E I P+ T+N +I F V+
Sbjct: 113 RTIKSYNALFKAILRRGRYMMAKRYFNKMLSEG-IEPARHTFNVMIWGFFLSGKVETANR 171
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
F+++K +SP+V TYN +I GY + E+ + MK + P TY L++GY
Sbjct: 172 FFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGY 230
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G +G+ V+ A F + ++ + + TYN ++ Y ++ + F ++K
Sbjct: 159 GFFLSGK---VETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGR- 214
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
NI P++VTY TLI + + VD +E+K + PN TY+ L+ G A +
Sbjct: 215 NIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAGKMIEA 274
Query: 281 EEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNL 312
I + M + P D + ++ L+ +SGNL
Sbjct: 275 RSILKEMMDKYLAPTDNSIFMRLISSQCNSGNL 307
>gi|359490016|ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Vitis vinifera]
Length = 1442
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 134/318 (42%), Gaps = 45/318 (14%)
Query: 79 KDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG-SRPRLA 137
KD Q V L D +L + + V VLD++ + + FV +K +G S + A
Sbjct: 118 KDWRQRVQFLTDRILG-LKSEEFVADVLDDRK---VQMTPTDFCFV--VKWVGQSSWQRA 171
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALL 197
LEV W + Y +P + T + G+ N LA ++FA A T+ YNA++
Sbjct: 172 LEVYEWLNLRHWY-SPNARMLATI-LSVLGKANQEALAVEIFARAEAASGNTVQVYNAMM 229
Query: 198 GAYMYNGLSDKCQSLFRDLK------------------------------------KEAN 221
G Y G K Q L ++ + +
Sbjct: 230 GVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSG 289
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
I P I+TYNTLIS R ++ + ++ P+++TYN +I+ Y M +
Sbjct: 290 IQPDIITYNTLISACSRESNLEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAG 349
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAY 341
+++ +++ +PD TY LL +A GN+ ++++I E + GK+ +I Y
Sbjct: 350 RLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMY 409
Query: 342 SKCSVTDRIKKIEALMRL 359
K D ++ + M+L
Sbjct: 410 GKRGQHDLAFQLYSDMKL 427
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 131/307 (42%), Gaps = 14/307 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I GR A LF + +K L TYN+LL A+ G DK + + D+
Sbjct: 332 YNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKEICEDMV 391
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K +TYNT+I ++G+ D + ++K S SP+ TY LI A M
Sbjct: 392 K-MGFGKDEMTYNTIIHMYGKRGQHDLAFQLYSDMKLSGRSPDAVTYTVLIDSLGKANMI 450
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHV--DGKEFPLI 334
+ E+ M V P T+ L+ GYA +G E+ ++ +++ + D + ++
Sbjct: 451 KEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSVM 510
Query: 335 RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAF 394
++ +++ ++ + L P+ L +++RV KE+ E++ K + D
Sbjct: 511 LDILLRFNESGKAMKLYQEMVLHSFKPDHA----LYEVMLRVLGKENREEDVHKVVKD-M 565
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454
E + + + I S + D AN ++ A S G L R S + Y S R
Sbjct: 566 EELCGMNS----QVICSILVKGECFDHAANMLRLAISQGCELDRENLLSILGSYGSSGRH 621
Query: 455 EEMESVL 461
E +L
Sbjct: 622 LEARELL 628
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 14/184 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ Y + ++ SL ++++ + P + TY +LIS FG+L +V+ E F+
Sbjct: 959 TYNTLILMYCRDRRPEEGLSLMHEMRR-VGLEPKLDTYKSLISAFGKLQMVEQAEELFEG 1017
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + Y+ ++ + + K E++ +MK V P T LL+ Y+ SG
Sbjct: 1018 LLSKECKLDRSFYHIMMKMFRNSGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQ 1077
Query: 312 LPRMEKIYELVKHHVDGKEFPL----IRAMICAYSKCSVTDRIKKIEALMRLIP---EKE 364
EK+ + +K V+G PL ++I AY K D I+ LM + E +
Sbjct: 1078 PEEAEKVLDNLK--VEG--LPLSTLPYSSVIDAYLKNG--DHNVAIQKLMEMKKDGLEPD 1131
Query: 365 YRPW 368
+R W
Sbjct: 1132 HRIW 1135
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 3/165 (1%)
Query: 190 IGTYNALLGAYMYNGLSD-KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+ +N++L +Y G+ D K L +EA + P TYNTLI ++ R + +
Sbjct: 922 LSIWNSVL--KLYTGIGDFKKTGQVYQLIQEAGLKPDEDTYNTLILMYCRDRRPEEGLSL 979
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
E++ L P + TY LI+ + M + EE+++ + + D + Y ++++ + +
Sbjct: 980 MHEMRRVGLEPKLDTYKSLISAFGKLQMVEQAEELFEGLLSKECKLDRSFYHIMMKMFRN 1039
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
SGN + EK+ ++K + ++ +YS + +K+
Sbjct: 1040 SGNHSKAEKLLGVMKEAGVEPTIATMHLLMVSYSGSGQPEEAEKV 1084
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 101/269 (37%), Gaps = 42/269 (15%)
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEI---KDSNLSPNVFTYNYLIAGYMTAWMWGK 279
SP+ T++SV G+ + EA EI ++ V YN ++ Y + K
Sbjct: 185 SPNARMLATILSVLGKA----NQEALAVEIFARAEAASGNTVQVYNAMMGVYARTGRFTK 240
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
V+E+ +M++ PD ++ L+ SG + I L + G I+ I
Sbjct: 241 VQELLDLMRSRGCEPDLVSFNTLINARLKSGTMVTNLAIELLNEVRRSG-----IQPDII 295
Query: 340 AYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS 399
Y+ LI ++E LEE K ND H+
Sbjct: 296 TYNT-----------------------------LISACSRESNLEEAVKVYNDMVAHRCQ 326
Query: 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES 459
+ ++S Y RC + K ES G+ Y+S + +A + V++++
Sbjct: 327 -PDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNSLLYAFAREGNVDKVKE 385
Query: 460 VLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+ ++M + T+ + + Y GQ
Sbjct: 386 ICEDMVKMGFGKDEMTYNTIIHMYGKRGQ 414
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 104/237 (43%), Gaps = 7/237 (2%)
Query: 93 LANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGT 152
LA ++LDK + S FR Y L+ L RL E + + YG
Sbjct: 868 LAKSNNLDKALDFFYDLVSSDFRPTPRTYG--PLIDGLAKVGRLE-EAMRLFEEMSDYGC 924
Query: 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQS 211
+ I G+I + + A LF N+ ++ + +Y L+ G D+
Sbjct: 925 KPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALY 984
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
F +LK + P + YN +I+ G+ ++ A + E+++ + P+++TYN L+
Sbjct: 985 YFNELKS-TGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNL 1043
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
A M + + +Y+ ++ + PD TY L+RGY+ S N +Y+ VDG
Sbjct: 1044 GLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYK--NMMVDG 1098
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 123/274 (44%), Gaps = 34/274 (12%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLI 268
+F K+ ISP++ +YN LI G LL V + E A F+++K+ +P+ FT+N L+
Sbjct: 774 IFDKFTKKLGISPTLASYNCLI---GELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHVD 327
A + + ++ E+Y+ M + PD TY +++ A S NL + ++ Y+LV
Sbjct: 831 AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFR 890
Query: 328 GKE---FPLIRAMICAYSKCSVTDRIKKIEALMRLIPE-KEY--RPWLNV--LLIRVYAK 379
PLI + ++ ++E MRL E +Y +P + +LI Y K
Sbjct: 891 PTPRTYGPLIDGLA----------KVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGK 940
Query: 380 ----EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR 435
E + ++ +N+ T+ ++ C+ + VD+ + +S G
Sbjct: 941 IGDTETACQLFKRMVNEGIRPDLKSYTI-LVDCLCLA----GRVDEALYYFNELKSTGLD 995
Query: 436 LCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI 469
Y+ + +R+EE ++ EM N I
Sbjct: 996 PDFIAYNRIINGLGKSQRMEEALALYNEMRNRGI 1029
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 86/416 (20%), Positives = 164/416 (39%), Gaps = 24/416 (5%)
Query: 96 VDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRP--RLALEVLNWRRRQAGYGTP 153
V+D+ VF + +K + RR + Y + + K L R R VLN + R+AG+
Sbjct: 138 VEDMAAVFEFMQKK---IIRRDLDTY--LTIFKALSIRGGLRQMTTVLN-KMRKAGF--V 189
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL 212
+ Y I + A +++ ++ LK ++ TY+AL+ A S+ L
Sbjct: 190 LNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVL 249
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
++++ + + P++ T+ I V GR +D F+ + D P++ TY LI
Sbjct: 250 LKEME-DLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALC 308
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
A +E++ MKA PD Y+ LL + G+L ++ + + DG
Sbjct: 309 NAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWS--QMEADGYMPD 366
Query: 333 LIRAMICAYSKCSVTDRIKKIEA--LMR---LIPEKEYRPWLNVLLIRVYAKEDCLEEME 387
++ I C D + +MR ++P L L+R ED L+ +
Sbjct: 367 VVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLL- 425
Query: 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVM 447
E T + + + K ++ ++ G ++ +
Sbjct: 426 ----GTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYS 481
Query: 448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
A R+ E +++ + + T+ +M Y+ GQ + +L M +NG
Sbjct: 482 LAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNG 537
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 8/195 (4%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ +YN L+G + ++K LF+D+K +P T+N L++V G+ + +
Sbjct: 787 TLASYNCLIGELLEVHYTEKAWDLFKDMKN-VGCAPDAFTFNMLLAVHGKSGKITELFEL 845
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
++E+ P+ TYN +I+ + K + + + + P TY L+ G A
Sbjct: 846 YKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAK 905
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G L +++E + + + +I Y K + D + R++ E RP
Sbjct: 906 VGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGK--IGDTETACQLFKRMVNEG-IRPD 962
Query: 369 LNVLLIRVYAKEDCL 383
L I V DCL
Sbjct: 963 LKSYTILV----DCL 973
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 101/248 (40%), Gaps = 18/248 (7%)
Query: 91 ELLANVDDLDKVFRVLD--EKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQA 148
++L D D+ F D K L H+ L++ R AL++L
Sbjct: 375 DVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLR--AGRIEDALKLLG---TME 429
Query: 149 GYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSD 207
G T Y I + G+ A + F + K + I NA L + G
Sbjct: 430 SVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLR 489
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+ +++F L+ E ++P VTYN ++ + ++ VD E+ + P+V N L
Sbjct: 490 EAKTMFNGLR-ENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSL 548
Query: 268 IAGYMTAWMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
I A G+V+E +QM MK + P TY LL G G R++K EL +
Sbjct: 549 IDSLYKA---GRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEG---RVQKAIELFES 602
Query: 325 HVDGKEFP 332
++ K P
Sbjct: 603 MIEKKCSP 610
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 1/128 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ Y G D+ +L ++ + P ++ N+LI + VD F
Sbjct: 509 TYNMMMKCYSKVGQVDEAVNLLSEMIRNG-CEPDVIVVNSLIDSLYKAGRVDEAWQMFDR 567
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+KD LSP V TYN L++G K E+++ M P+T ++ LL + +
Sbjct: 568 MKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDE 627
Query: 312 LPRMEKIY 319
+ K++
Sbjct: 628 VELALKMF 635
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 6/148 (4%)
Query: 166 AGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
AGR VD A +F + L T+ TYN LL G K LF + E SP
Sbjct: 555 AGR---VDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMI-EKKCSP 610
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
+ +++NTL+ F + V+ F ++ + P+V TYN +I G + +
Sbjct: 611 NTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFF 670
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+K + PD T LL G G +
Sbjct: 671 HQLKKS-MHPDHVTICTLLPGLVKCGQI 697
>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 532
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 89/186 (47%), Gaps = 1/186 (0%)
Query: 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF-AEAANKHLKTIGTYNALL 197
E + + + +P + I+ R+ V+ +LF A + L + TYN L+
Sbjct: 181 EAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLI 240
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
D+ L ++++ + SP ++TY ++IS F +L ++ F+E+ S +
Sbjct: 241 SGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGI 300
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
P V T+N LI G+ E +++ M + +PD T+ L+ GY +G++ K
Sbjct: 301 EPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLK 360
Query: 318 IYELVK 323
+++++K
Sbjct: 361 VWDVMK 366
>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
Length = 581
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 132/309 (42%), Gaps = 28/309 (9%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI-KDSNLSPNVFTYNYLIAGYMTAWM 276
E SP VT+N ++ R V + + +D PNV T+ +I+GY A
Sbjct: 276 NEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKA-- 333
Query: 277 WGKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
GK+E+ +Y M A +MP+T TY +L+ GY G+L ++Y+ + +
Sbjct: 334 -GKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVT 392
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV----LLIRVYAKEDCLEEMEKS 389
++I Y +C D +I + M ++R NV ++I K++ +E +
Sbjct: 393 FSSLIDGYCRCGQLDDALRIWSDM-----AQHRIQPNVYTFSIIIHSLCKQNRSDEAIRL 447
Query: 390 INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA-ESAGWRLCRSLYHSKMVMY 448
+N+ I ++ +C VD+ AN +++ E G R + Y ++ Y
Sbjct: 448 LNELNLRPDIAPQAFIYNPVIDVLCKCGKVDE-ANLIRKGMEEKGCRPDKYTYTILIIGY 506
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC----GQRRKVNQVLGLMCKNGY 504
+ R+ E EM + CS + I + +C G +V+ V+ L +G
Sbjct: 507 CMKSRISEAIMFFHEM--VEAGCSPDS--ITVNCFISCLLKAGMPNEVDHVMRL--ASGG 560
Query: 505 DVPVNAFPS 513
+ FPS
Sbjct: 561 ASSIQEFPS 569
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 14/217 (6%)
Query: 119 NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADL 178
NGY V LGS A+EV R P ++ I R +D A +
Sbjct: 363 NGYGKV---GDLGS----AVEVYQQMTR---LRCPPDVVTFSSLIDGYCRCGQLDDALRI 412
Query: 179 FAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
+++ A ++ + T++ ++ + SD+ L +L +I+P YN +I V
Sbjct: 413 WSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNPVIDVLC 472
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY-MTAWMWGKVEEIYQMMKAGPVMPDT 296
+ VD + +++ P+ +TY LI GY M + + + ++M++AG PD+
Sbjct: 473 KCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAG-CSPDS 531
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG-KEFP 332
T + +G ++ + L +EFP
Sbjct: 532 ITVNCFISCLLKAGMPNEVDHVMRLASGGASSIQEFP 568
>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 754
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 3/165 (1%)
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLS-D 207
+G P + YT I GR +++ +L + + +I TYN ++ + GL+ +
Sbjct: 171 HGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWE 230
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
SLF +++ E I P I+TYNTL++ L D E F+ + + + P++ TY L
Sbjct: 231 GLLSLFAEMRHEG-IQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNL 289
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ + KV E+ + M++ +PD ++Y +LL YA G++
Sbjct: 290 VETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDI 334
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 154/364 (42%), Gaps = 37/364 (10%)
Query: 167 GRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G++N ++ ++L E ++ +L I +YN LL AY G +FR + +EA P+
Sbjct: 294 GKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQM-QEARCVPN 352
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
VTY+ L++++G D + F E+K SN P+V TYN LI + + +V ++
Sbjct: 353 AVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFH 412
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF-PLIRA---MICAY 341
M V P+ TY L+ G +KI H+D K P +A +I AY
Sbjct: 413 DMVEENVEPNMGTYEGLIYACGKGGLHEDAKKIL----LHMDEKGIVPSTKAYTGVIEAY 468
Query: 342 SKCSVTDRIKKIEALMRL--IPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHK 397
+ + + EAL+ + E +P + LI ++A+ +E E + E
Sbjct: 469 GQAASYE-----EALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGE-- 521
Query: 398 TSVTTVR-IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
+ V R ++ Y + ++ E A ++ + + + +Y + V+E
Sbjct: 522 SGVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDE 581
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYA---------------TCGQRRKVNQVLGLMCK 501
E +E+ I S + +M YA + ++QV+G M K
Sbjct: 582 SEEQFREIRASGILPSVMCYCMMIAVYARSNRWDDAYEVLDEMVTNKVSNIHQVVGKMMK 641
Query: 502 NGYD 505
YD
Sbjct: 642 GDYD 645
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 136/355 (38%), Gaps = 57/355 (16%)
Query: 178 LFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFR---------------------- 214
LFAE ++ ++ I TYN LL A GL D+ + +FR
Sbjct: 235 LFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFG 294
Query: 215 ---------DLKKEANIS---PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF 262
+L KE S P I +YN L+ + + H F++++++ PN
Sbjct: 295 KLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAV 354
Query: 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-EL 321
TY+ L+ Y + V E++ MK PD TY +L+ + G + ++ ++
Sbjct: 355 TYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDM 414
Query: 322 VKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAK 379
V+ +V+ +I A K + + KKI + + EK P +I Y +
Sbjct: 415 VEENVE-PNMGTYEGLIYACGKGGLHEDAKKI---LLHMDEKGIVPSTKAYTGVIEAYGQ 470
Query: 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC-- 437
EE N E S TV +++ + R K +E+ W++
Sbjct: 471 AASYEEALVMFNTMNEM-GSKPTVETYNSLINMFAR-------GGLYKESEAIMWKMGES 522
Query: 438 -----RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
R ++ + Y + EE E+E + ++TF + Y T G
Sbjct: 523 GVARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAG 577
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 57/286 (19%), Positives = 116/286 (40%), Gaps = 38/286 (13%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
LF+ ++++ P+ Y +IS+ GR L++ F+E+ + +VF+Y LI Y
Sbjct: 128 LFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTEIFEEMPTHGVPRSVFSYTALINSY 187
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKE 330
+ E+ + MK V P TY ++ A G N + ++ ++H +G +
Sbjct: 188 GRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRH--EGIQ 245
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI 390
+I Y LN R E E + +++
Sbjct: 246 PDIIT-----------------------------YNTLLNACANRGLGDE--AEMVFRTM 274
Query: 391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450
N+ V + R +V ++ + N ++K++ +K ES+G S Y+ + YAS
Sbjct: 275 NEG----GMVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYAS 330
Query: 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
+ + V ++M+ + + T+ ++ Y G+ V ++
Sbjct: 331 KGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELF 376
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 104/237 (43%), Gaps = 7/237 (2%)
Query: 93 LANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGT 152
LA ++LDK + S FR Y L+ L RL E + + YG
Sbjct: 868 LAKSNNLDKALDFFYDLVSSDFRPTPRTYG--PLIDGLAKVGRLE-EAMRLFEEMSDYGC 924
Query: 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQS 211
+ I G+I + + A LF N+ ++ + +Y L+ G D+
Sbjct: 925 KPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALY 984
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
F +LK + P + YN +I+ G+ ++ A + E+++ + P+++TYN L+
Sbjct: 985 YFNELKS-TGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNL 1043
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
A M + + +Y+ ++ + PD TY L+RGY+ S N +Y+ VDG
Sbjct: 1044 GLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYK--NMMVDG 1098
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 89/416 (21%), Positives = 167/416 (40%), Gaps = 24/416 (5%)
Query: 96 VDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRP--RLALEVLNWRRRQAGYGTP 153
V+D+ VF + +K + RR + Y + + K L R R VLN + R+AG+
Sbjct: 138 VEDMAAVFEFMQKK---IIRRDLDTY--LTIFKALSIRGGLRQMTTVLN-KMRKAGF--V 189
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL 212
+ Y I + A +++ ++ LK ++ TY+AL+ A S+ L
Sbjct: 190 LNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVL 249
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
++++ + + P++ T+ I V GR +D F+ + D P++ TY LI
Sbjct: 250 LKEME-DLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALC 308
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
A +E++ MKA PD Y+ LL + G+L ++ + + DG
Sbjct: 309 NAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWS--QMEADGYMPD 366
Query: 333 LIRAMICAYSKCSVTDRIKKIEA--LMR---LIPEKEYRPWLNVLLIRVYAKEDCLEEME 387
++ I C D + +MR ++P L L+R ED L+ ++
Sbjct: 367 VVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLD 426
Query: 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVM 447
++ T+ T + + S AV+ + C + +S
Sbjct: 427 -TMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYS---- 481
Query: 448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
A R+ E +++ + + T+ +M Y+ GQ + +L M +NG
Sbjct: 482 LAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNG 537
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 123/274 (44%), Gaps = 34/274 (12%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLI 268
+F K+ ISP++ +YN LI G LL V + E A F+++K+ +P+ FT+N L+
Sbjct: 774 IFDKFTKKLGISPTLASYNCLI---GELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHVD 327
A + + ++ E+Y+ M + PD TY +++ A S NL + ++ Y+LV
Sbjct: 831 AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFR 890
Query: 328 GKE---FPLIRAMICAYSKCSVTDRIKKIEALMRLIPE-KEY--RPWLNV--LLIRVYAK 379
PLI + ++ ++E MRL E +Y +P + +LI Y K
Sbjct: 891 PTPRTYGPLIDGLA----------KVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGK 940
Query: 380 ----EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR 435
E + ++ +N+ T+ ++ C+ + VD+ + +S G
Sbjct: 941 IGDTETACQLFKRMVNEGIRPDLKSYTI-LVDCLCLA----GRVDEALYYFNELKSTGLD 995
Query: 436 LCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI 469
Y+ + +R+EE ++ EM N I
Sbjct: 996 PDFIAYNRIINGLGKSQRMEEALALYNEMRNRGI 1029
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 8/195 (4%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ +YN L+G + ++K LF+D+K +P T+N L++V G+ + +
Sbjct: 787 TLASYNCLIGELLEVHYTEKAWDLFKDMKN-VGCAPDAFTFNMLLAVHGKSGKITELFEL 845
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
++E+ P+ TYN +I+ + K + + + + P TY L+ G A
Sbjct: 846 YKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAK 905
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G L +++E + + + +I Y K + D + R++ E RP
Sbjct: 906 VGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGK--IGDTETACQLFKRMVNEG-IRPD 962
Query: 369 LNVLLIRVYAKEDCL 383
L I V DCL
Sbjct: 963 LKSYTILV----DCL 973
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 101/248 (40%), Gaps = 18/248 (7%)
Query: 91 ELLANVDDLDKVFRVLD--EKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQA 148
++L D D+ F D K L H+ L++ R AL++L+
Sbjct: 375 DVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLR--AGRIEDALKLLD---TME 429
Query: 149 GYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSD 207
G T Y I + G+ A + F + K + I NA L + G
Sbjct: 430 SVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLR 489
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+ +++F L+ E ++P VTYN ++ + ++ VD E+ + P+V N L
Sbjct: 490 EAKTMFNGLR-ENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSL 548
Query: 268 IAGYMTAWMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
I A G+V+E +QM MK + P TY LL G G R++K EL +
Sbjct: 549 IDSLYKA---GRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEG---RVQKAIELFES 602
Query: 325 HVDGKEFP 332
+ K P
Sbjct: 603 MIXKKCSP 610
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 1/128 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ Y G D+ +L ++ + P ++ N+LI + VD F
Sbjct: 509 TYNMMMKCYSKVGQVDEAVNLLSEMIRNG-CEPDVIVVNSLIDSLYKAGRVDEAWQMFDR 567
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+KD LSP V TYN L++G K E+++ M P+T ++ LL + +
Sbjct: 568 MKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDE 627
Query: 312 LPRMEKIY 319
+ K++
Sbjct: 628 VELALKMF 635
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 6/148 (4%)
Query: 166 AGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
AGR VD A +F + L T+ TYN LL G K LF + + SP
Sbjct: 555 AGR---VDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXK-KCSP 610
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
+ +++NTL+ F + V+ F ++ + P+V TYN +I G + +
Sbjct: 611 NTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFF 670
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+K + PD T LL G G +
Sbjct: 671 HQLKKS-MHPDHVTICTLLPGLVKCGQI 697
>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 136/317 (42%), Gaps = 9/317 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+++AL+G NG D+ FRD+K A ++P V Y LI F R ++ E
Sbjct: 396 SFSALIGLLSKNGCLDQALKYFRDMKN-AGLAPDNVIYTILIGGFCRNGVMSEALKVRDE 454
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + +V TYN ++ G M + +E++ M V PD T+ L+ GY+ GN
Sbjct: 455 MLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGN 514
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ + ++E++ + +I + K S +++ E +I + Y ++
Sbjct: 515 MNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVN--ELWNDMISRRIYPNHISY 572
Query: 372 -LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC--IVSSYFRCNAVDKLANFVKR 428
+LI Y C+ E + ++ E T I+ C IV Y R K F+
Sbjct: 573 GILINGYCNMGCVSEAFRLWDEMVEKGFEAT---IITCNTIVKGYCRAGNAVKADEFLSN 629
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
G Y++ + + + ++ +++ +MEN + T+ ++ ++ G+
Sbjct: 630 MLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGR 689
Query: 489 RRKVNQVLGLMCKNGYD 505
++ ++ M + G +
Sbjct: 690 MQEAELIMLKMIERGVN 706
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 4/183 (2%)
Query: 172 VDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
VDLA +++ E ++ + T N ++ A N + +S D++ E + P +VTYN
Sbjct: 235 VDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDME-EKGVFPDVVTYN 293
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKA 289
TLI+ + R L++ + L P VFTYN +I G + + + + +M+K
Sbjct: 294 TLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI 353
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
G + PDT TY +LL + N+ E+I++ + + A+I SK D+
Sbjct: 354 G-MSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQ 412
Query: 350 IKK 352
K
Sbjct: 413 ALK 415
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
TI T N ++ Y G + K ++ + I P +TYNTLI+ F + +D A
Sbjct: 603 TIITCNTIVKGYCRAGNAVKADEFLSNMLLKG-IVPDGITYNTLINGFIKEENMDRAFAL 661
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
++++S L P+V TYN ++ G+ + E I M V PD +TY L+ G+
Sbjct: 662 VNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVT 721
Query: 309 SGNLPRMEKIYE 320
NL ++++
Sbjct: 722 QNNLKEAFRVHD 733
Score = 38.5 bits (88), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264
L + C++ FR LK + + SI N+L+ ++ VD +QE+ S + NV+T
Sbjct: 200 LREGCEA-FRVLKSKG-LCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTL 257
Query: 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
N +I + M+ V PD TY L+ Y G L E+ +EL+
Sbjct: 258 NIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLL---EEAFELM 312
>gi|255552808|ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543458|gb|EEF44989.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 654
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/340 (22%), Positives = 142/340 (41%), Gaps = 19/340 (5%)
Query: 175 AADLFAE--AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
A +FAE AN L + T N ++ Y + + LF ++K I P++V+YNTL
Sbjct: 293 ALSVFAEMNEANCSLDLM-TCNIMIDVYGQLDMVKEADRLFWSMRK-MGIEPNVVSYNTL 350
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
+ V+G L F+ ++ + NV TYN +I Y + K + Q M+ +
Sbjct: 351 LKVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQKRGI 410
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352
P+ TY ++ + +G L R +++ ++ + L + MI AY + + K+
Sbjct: 411 EPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKR 470
Query: 353 IEALMR---LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCI 409
+ ++ +IP I++ A+ +EE AF+ V + + RC+
Sbjct: 471 LLHDLKCPDIIPRDT--------AIKILARAGRIEEATWVFRQAFD-AGEVKDISVFRCM 521
Query: 410 VSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI 469
+ + R + ++ AG+ + + Y R E+ ++V +EM+ +
Sbjct: 522 IELFSRNKRPANVVEVFEKMRGAGYFPDSDVIALVLNAYGKLREFEKADAVYREMQEEEC 581
Query: 470 DCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVN 509
+ + M Y G R+ V L K D +N
Sbjct: 582 VFPDEVHFQMLSLY---GARKDFIMVESLFEKLDSDPNIN 618
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 74/364 (20%), Positives = 151/364 (41%), Gaps = 48/364 (13%)
Query: 124 VELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA 183
V L+ Q R +L +L+W A Y + Y ++ R DLA LF E
Sbjct: 105 VSLISQEADWQR-SLALLDWINEVARYSPSVFA--YNVVLRNVLRAKKWDLAHGLFDEMR 161
Query: 184 NKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
+ L TY+ L+ ++ G+ D+ + ++++ +S +V Y+ LI + +L
Sbjct: 162 QRALSPDRYTYSTLITSFGKAGMFDESLFWLQQMEQD-RVSGDLVLYSNLIELSRKLCDY 220
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
+ F +K S ++P++ YN +I + A ++ + + M+ V+PDT +Y L
Sbjct: 221 SKAISIFMRLKRSGITPDLVAYNSMINVFGKARLFREARMLVHEMREVGVLPDTVSYSTL 280
Query: 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE 362
L Y + ++ + + MI Y + D +K+ + L + +
Sbjct: 281 LSVYVENEKFVEALSVFAEMNEANCSLDLMTCNIMIDVYGQL---DMVKEADRLFWSMRK 337
Query: 363 KEYRPWLNVL----LIRVYAKEDCL------------EEMEKSI----------NDAFEH 396
P NV+ L++VY + + +E+E+++ + EH
Sbjct: 338 MGIEP--NVVSYNTLLKVYGEAELFGEAIHLFRLMQRKEIEQNVVTYNTMIKIYGKSLEH 395
Query: 397 KTSVTTVRIMR------------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSK 444
+ + V+ M+ I+S + + +D+ A ++ S+G + + LY +
Sbjct: 396 EKATNLVQEMQKRGIEPNAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTM 455
Query: 445 MVMY 448
+V Y
Sbjct: 456 IVAY 459
>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
Length = 617
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 2/188 (1%)
Query: 145 RRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYN 203
R G + Y I G+ N + A D F + + ++ + T+N L+ A+
Sbjct: 393 REMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKG 452
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G D+ LF +++ E+N P TYN +I++ G + +EA E+K+ L PN+ T
Sbjct: 453 GRHDRAAELFEEMR-ESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIIT 511
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
Y L+ Y + + + + + MKA + P Y L+ YA G P + L+K
Sbjct: 512 YTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLRPDVITYTTLMK 571
Query: 324 HHVDGKEF 331
+ ++F
Sbjct: 572 ALIRVEQF 579
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/347 (19%), Positives = 128/347 (36%), Gaps = 45/347 (12%)
Query: 173 DLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
D A +L A A L AL+ A G + ++LF + I P YN
Sbjct: 245 DAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRAYNA 304
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L+ + R+ + + E E+ ++P+ TY+ L+ Y A W + + M+A
Sbjct: 305 LLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADG 364
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351
V P + + +L G+ G+ K F ++R M + +
Sbjct: 365 VKPSSYVFSRILAGFRDRGDW---------------QKAFAVLREMQASGVR-------- 401
Query: 352 KIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVS 411
P++ + NV +I + K +CL + N E V ++
Sbjct: 402 ---------PDRHF---YNV-MIDTFGKYNCLGHAMDAFNKMREEGIEPDVV-TWNTLID 447
Query: 412 SYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC 471
++ + D+ A + + + Y+ + + Q E +E++L EM+ +
Sbjct: 448 AHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVP 507
Query: 472 SKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG-------YDVPVNAF 511
+ T+ + Y G+ ++ + M +G Y VNA+
Sbjct: 508 NIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAY 554
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 131/323 (40%), Gaps = 14/323 (4%)
Query: 134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE--AANKHLKTIG 191
P ALE+L QA TP + T I G V A LF E A +
Sbjct: 244 PDAALELLA--SAQAIGLTPRSNA-VTALISALGTAGRVAEAEALFLEFFLAGEIKPRTR 300
Query: 192 TYNALLGAYM-YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
YNALL Y+ L + Q L D + ++P TY+ L+ + R + +
Sbjct: 301 AYNALLKGYVRIASLKNAEQVL--DEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLK 358
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E++ + P+ + ++ ++AG+ W K + + M+A V PD + Y +++ +
Sbjct: 359 EMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYN 418
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
L + ++ + +I A+ K DR ++ MR E P
Sbjct: 419 CLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMR---ESNCPPGTT 475
Query: 371 V--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
++I + +++ E +E +++ E V + +V Y R + + ++
Sbjct: 476 TYNIMINLLGEQEHWEGVEAMLSEMKEQGL-VPNIITYTTLVDVYGRSGRYKEAIDCIEA 534
Query: 429 AESAGWRLCRSLYHSKMVMYASQ 451
++ G + ++YH+ + YA +
Sbjct: 535 MKADGLKPSPTMYHALVNAYAQR 557
>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g64583, mitochondrial; Flags: Precursor
gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
Length = 512
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 102/256 (39%), Gaps = 56/256 (21%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPR------------------LALEVLNWRRRQAGYG 151
G CL R + ++ V LM + G P +ALE+LN ++
Sbjct: 150 GFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGA 209
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQ 210
+T G+ ++GR ++ AA + + + + + T+ AL+ ++ G D+ Q
Sbjct: 210 DVVTYNTLLTGLCYSGRWSD---AARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQ 266
Query: 211 SLFR----------------------------------DLKKEANISPSIVTYNTLISVF 236
L++ DL P++VTYNTLIS F
Sbjct: 267 ELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGF 326
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
+ +VD FQ + + ++FTYN LI GY +I+ M + V PD
Sbjct: 327 CKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDI 386
Query: 297 NTYLLLLRGYAHSGNL 312
T+ +LL G +G +
Sbjct: 387 ITHCILLHGLCVNGEI 402
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 189 TIGTYNALL-GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+I T+ +LL G + N + D + L ++ P++V YNTLI + ++
Sbjct: 140 SIVTFGSLLHGFCLVNRIGDAFSLVI--LMVKSGYEPNVVVYNTLIDGLCKNGELNIALE 197
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
E++ L +V TYN L+ G + W + + M + PD T+ L+ +
Sbjct: 198 LLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFV 257
Query: 308 HSGNLPRMEKIY-ELVKHHVD 327
GNL +++Y E+++ VD
Sbjct: 258 KQGNLDEAQELYKEMIQSSVD 278
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 9/194 (4%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG 191
SR AL VL + + +T G RI + L ++ + +
Sbjct: 120 SRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYE--PNVV 177
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLLLVDHMEAA 248
YN L+ NG + L +++K+ + +VTYNTL++ GR M
Sbjct: 178 VYNTLIDGLCKNGELNIALELLNEMEKKG-LGADVVTYNTLLTGLCYSGRWSDAARM--- 233
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+++ +++P+V T+ LI ++ + +E+Y+ M V P+ TY ++ G
Sbjct: 234 LRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCM 293
Query: 309 SGNLPRMEKIYELV 322
G L +K ++L+
Sbjct: 294 HGRLYDAKKTFDLM 307
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 28/210 (13%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C+ R + +LM G P V+ + +G+ +E G+K R+
Sbjct: 290 GLCMHGRLYDAKKTFDLMASKGCFP----NVVTYNTLISGFCKFRMVDE---GMKLFQRM 342
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
+ AD+F TYN L+ Y G +F + ++P I+T+
Sbjct: 343 SCEGFNADIF------------TYNTLIHGYCQVGKLRVALDIFCWMVSR-RVTPDIITH 389
Query: 230 NTLISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
L+ L + +E+A F ++++S + YN +I G A K E++
Sbjct: 390 CILLH---GLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCR 446
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
+ V PD TY +++ G +G PR E
Sbjct: 447 LPVEGVKPDARTYTIMILGLCKNG--PRRE 474
>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Cucumis sativus]
Length = 707
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/307 (23%), Positives = 132/307 (42%), Gaps = 15/307 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+ +++ Y G + C+++F + E I P+IV+YN LIS + + + F E
Sbjct: 209 TFTSIIHLYSVRGQIEDCKAVFSTMLAEG-IKPNIVSYNALISAYASHGMDKEAFSVFDE 267
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S P+V +Y LI+ + + + E++ MMK P+ +Y L+ Y +G
Sbjct: 268 MKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGY 327
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
LP+ I L + DG P + ++ + C + I++++ + LN
Sbjct: 328 LPQAVDI--LREMEQDGIH-PNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIH--LNT 382
Query: 372 L----LIRVYAKEDCLEEMEKSIN--DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
+ I Y + E EK+IN + E+KT+ ++S R + ++ F
Sbjct: 383 IACNSAIGSYMN---IGEYEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCF 439
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
K L +Y S + Y+ Q ++ + ES+ ++ T+ M AY+
Sbjct: 440 FKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSA 499
Query: 486 CGQRRKV 492
KV
Sbjct: 500 SEMWEKV 506
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 10/190 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAA-NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I GR A ++F NK + +YNAL+ AY NG + + R+++
Sbjct: 280 YTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREME 339
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ I P++V+ TL++ GR ++++ + + N N I YM +
Sbjct: 340 QDG-IHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEY 398
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL---- 333
K +Y+ M+ PD+ T+ +L+ G + + E+ K +D + PL
Sbjct: 399 EKAINLYRSMENKTTKPDSVTFTILISGCCR---MSKYEEALCFFKEMLDLR-IPLSSEI 454
Query: 334 IRAMICAYSK 343
+MICAYSK
Sbjct: 455 YSSMICAYSK 464
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
I +YNAL+ AY +G+ + S+F ++K+ + P +V+Y +LIS FGR
Sbjct: 241 NIVSYNALISAYASHGMDKEAFSVFDEMKR-SGFCPDVVSYTSLISTFGRSQQPARAREV 299
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F +K + PN+ +YN L+ Y + + +I + M+ + P+ + LL
Sbjct: 300 FDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGR 359
Query: 309 SGNLPRMEKI 318
G ++ +
Sbjct: 360 FGQKVNIDSV 369
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 54/109 (49%)
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
+K + P +VT+ ++I ++ ++ +A F + + PN+ +YN LI+ Y + M
Sbjct: 198 EKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGM 257
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
+ ++ MK PD +Y L+ + S R ++++++K +
Sbjct: 258 DKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRN 306
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 84/217 (38%), Gaps = 42/217 (19%)
Query: 180 AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR- 238
AE HL TI N+ +G+YM G +K +L+R ++ + P VT+ LIS R
Sbjct: 373 AELRGIHLNTIAC-NSAIGSYMNIGEYEKAINLYRSMENKTT-KPDSVTFTILISGCCRM 430
Query: 239 ------LLLVDHM----------------------------EAAFQEIKDSNLSPNVFTY 264
L M E+ F +K S P++ TY
Sbjct: 431 SKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTY 490
Query: 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
+I Y + MW KV +YQ M+A + D+ L++ + + + E++K
Sbjct: 491 TAMINAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAFNKGNQASNVLILAEIMKE 550
Query: 325 HVDGKEFPLIRA-MICAYSKCSVTDRIKKIEALMRLI 360
K P A S CS+ +K L+ L+
Sbjct: 551 ----KGIPFNDANFFEMLSACSILRDWRKATDLINLM 583
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%)
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G + C +F +K + N YN +I + R +D F E++ P+V T
Sbjct: 8 GSIEHCVQVFDWMKNQRNYCARNDIYNMMIRLHARHNRIDQARGLFFEMQKWRCKPDVET 67
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
YN LI + A W I + M + P +T+ L+ GN
Sbjct: 68 YNALINAHGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLINACGSCGN 115
>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 477
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 94/199 (47%), Gaps = 5/199 (2%)
Query: 145 RRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYN 203
R+ G+ YT I + V A DL++E K + + TYN L+ +
Sbjct: 222 RKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIM 281
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G + SL ++K + NI+P + T+N LI G+ +D + F+E+K N+ PN+ T
Sbjct: 282 GNLKEAFSLLNEMKLK-NINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVT 340
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE--L 321
Y LI G + + + MK + PD +Y +LL G L ++ ++ L
Sbjct: 341 YTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLL 400
Query: 322 VK-HHVDGKEFPLIRAMIC 339
VK +H++ + + ++ +C
Sbjct: 401 VKGYHLNVRTYNVMINGLC 419
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
Query: 167 GRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G+ +D A LF E +K++ I TY +L+ N ++ +L + +K E I P
Sbjct: 314 GKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMK-EQGIQPD 372
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+ +Y L+ + +++ + FQ + NV TYN +I G A ++G V ++
Sbjct: 373 VYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKS 432
Query: 286 MMKAGPVMPDTNTY 299
M+ MPD T+
Sbjct: 433 KMEGKGCMPDAITF 446
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 169 INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+ N+ A L E K++ + T+N L+ A G D+ SLF ++K + N+ P+IV
Sbjct: 281 MGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHK-NMFPNIV 339
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TY +LI + ++ A +++K+ + P+V++Y L+ ++ +Q +
Sbjct: 340 TYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHL 399
Query: 288 KAGPVMPDTNTYLLLLRGYAHSG 310
+ TY +++ G +G
Sbjct: 400 LVKGYHLNVRTYNVMINGLCKAG 422
>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
Length = 1283
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 141/351 (40%), Gaps = 73/351 (20%)
Query: 186 HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK---------------------------- 217
HL T+ +NA++G Y +G D + L ++
Sbjct: 57 HLPTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGV 116
Query: 218 --------KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
++A + P +TYNTLIS + +D A F+E+ S P+++TYN +++
Sbjct: 117 ALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVS 176
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI-YELVKH---- 324
+ + E +++ + PD TY LL +A G++ R+E++ ELVK
Sbjct: 177 VHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRK 236
Query: 325 ---------HVDGKEFPL---------IRAMICAYSKCSVT---------DRIKKIEALM 357
H+ GK L +RA+ C + T DRI + ++
Sbjct: 237 DGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVL 296
Query: 358 RLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF- 414
+ + +P L LI YAK ++ E++ + E + V R+ ++ F
Sbjct: 297 EEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVE--SGVKPDRLAYLVMLDVFA 354
Query: 415 RCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
R + KL + G++ LY + A +E+E V+++ME
Sbjct: 355 RSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDME 405
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 146/317 (46%), Gaps = 29/317 (9%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS---VFGRLLLVDHMEAAF 249
+NAL+ AY +GL + +++F + K+ + P++ + N ++ V GRL D +
Sbjct: 625 WNALIHAYAESGLYEHARAIFDIMIKKGPL-PTVESVNGMMRALIVDGRL---DELYVVV 680
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
QE++D ++ + T ++ + A +V +IY MKA +P+ + Y +++ H+
Sbjct: 681 QELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHN 740
Query: 310 GNLPRMEKIYELVKHHVDGKEFP----LIRAMICAYSKCSVTDR-IKKIEALMR--LIPE 362
+ EL+ ++G F ++ ++ Y+ DR I+ +++ L P+
Sbjct: 741 KRF----RDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPD 796
Query: 363 KEYRPWLNVLLIRVYAKED---CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
++ L V+ R + E+ L EM K + + + ++++ +
Sbjct: 797 EDTYNTLIVMYSRNFRPEEGFTLLYEMGK--------RGLTPKLESYKILLAASGKAKLW 848
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
++ + + G+RL RS+YH M +Y + R + E +L M+ I+ + T I+
Sbjct: 849 EQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHIL 908
Query: 480 YYAYATCGQRRKVNQVL 496
+Y T G + +VL
Sbjct: 909 MTSYGTSGHPDEAEKVL 925
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 85/195 (43%), Gaps = 8/195 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ Y G D L+ +++ +P VTY L+ G++ + +E
Sbjct: 240 TYNTMIHMYGKMGRLDLALGLYDEMRA-IGCTPDAVTYTVLVDSLGKMDRISEAGKVLEE 298
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ D+ L P + T++ LI Y + E + M V PD YL++L +A S
Sbjct: 299 MADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDE 358
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ +Y + + L + ++ A +K + D I+ + M + E +N
Sbjct: 359 TRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFE------MNP 412
Query: 372 LLI-RVYAKEDCLEE 385
L+I + K +C+ +
Sbjct: 413 LVISSILIKAECISQ 427
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ Y N ++ +L ++ K ++P + +Y L++ G+ L + + F+E
Sbjct: 799 TYNTLIVMYSRNFRPEEGFTLLYEMGKRG-LTPKLESYKILLAASGKAKLWEQADLLFEE 857
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ N Y+ ++ Y A K E + MK + P T +L+ Y SG+
Sbjct: 858 MRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGH 917
Query: 312 LPRMEKIYELVK 323
EK+ +K
Sbjct: 918 PDEAEKVLNSLK 929
>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
Length = 720
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/383 (21%), Positives = 160/383 (41%), Gaps = 25/383 (6%)
Query: 144 RRRQAGYGTPMTKEEYTKGIKFAGRINNVD--LAADLFAEAANKHLKTIGTY-NALLGAY 200
R RQ G+ + Y+ I+ R N +D L L+ E + ++ G N ++ +
Sbjct: 234 RMRQDGFQSDFIN--YSLIIQSLTRTNKIDIPLLQKLYEEIESDKIELDGLLLNDIILGF 291
Query: 201 MYNGLSDKCQSL-FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
G D ++L F + + + ++P T+ +IS G + EA F+E+K+ L P
Sbjct: 292 AKAG--DPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKP 349
Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ +N L+ GY + E I M+ + PD +TY LL+ YA+ G R E
Sbjct: 350 RIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVG---RWESAR 406
Query: 320 ELVKH----HVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIR 375
L+K +V F R ++ +Y + ++ M+ K R + NV +I
Sbjct: 407 HLLKQMEARNVQPNTFIFSR-ILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNV-MID 464
Query: 376 VYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR 435
+ K +CL+ ++ + V ++ + + D+ A + + G+
Sbjct: 465 TFGKFNCLDHAMETYDRMLSEGIEPDVV-TWNTLIDCHRKHGYHDRAAELFEEMQERGYL 523
Query: 436 LCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQV 495
C + Y+ + Q + +E++ +L +M++ + + T+ + Y G+
Sbjct: 524 PCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDC 583
Query: 496 LGLMCKNG-------YDVPVNAF 511
L M G Y+ +NAF
Sbjct: 584 LEAMKSAGLKPSATMYNALINAF 606
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 2/153 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I G+ N +D A + + ++ ++ + T+N L+ + +G D+ LF +++
Sbjct: 459 YNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQ 518
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + P TYN +I+ G D ++ +++ L PNV TY L+ Y + +
Sbjct: 519 ERGYL-PCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRF 577
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + MK+ + P Y L+ +A G
Sbjct: 578 NDAIDCLEAMKSAGLKPSATMYNALINAFAQRG 610
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 6/156 (3%)
Query: 187 LKTIGTYNALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM 245
L + TY L+ Y ++G +D L + K A + PS YN LI+ F + L +
Sbjct: 558 LPNVVTYTTLVDIYGHSGRFNDAIDCL--EAMKSAGLKPSATMYNALINAFAQRGLSEQA 615
Query: 246 EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
A++ + L P++ N LI + + I Q MK V PD TY L++
Sbjct: 616 VNAYRVMISDGLRPSLLALNSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKA 675
Query: 306 YAHSGNLPRMEKIYE---LVKHHVDGKEFPLIRAMI 338
++ +YE L DGK ++R+ +
Sbjct: 676 LIRVDKFDKVPAVYEEMILSGCTPDGKARAMLRSAL 711
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 57/299 (19%), Positives = 117/299 (39%), Gaps = 40/299 (13%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
+ K T TYNAL+GA N +K +L ++++ + Y+ +I R +
Sbjct: 202 SQKQTLTPLTYNALIGACARNNDLEKALNLMSRMRQDG-FQSDFINYSLIIQSLTRTNKI 260
Query: 243 D--HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
D ++ ++EI+ + + N +I G+ A + M++A + P T+T++
Sbjct: 261 DIPLLQKLYEEIESDKIELDGLLLNDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFV 320
Query: 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI 360
++ + G E I+E +K + + RIK AL++
Sbjct: 321 AVISALGNHGRTEEAEAIFEEMK-------------------EGGLKPRIKAFNALLKGY 361
Query: 361 PEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420
K + E + EMEKS EH + +V +Y +
Sbjct: 362 ARKG----------SLKEAESIISEMEKSGLSPDEHTYGL--------LVDAYANVGRWE 403
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
+ +K+ E+ + ++ + Y + ++ VL+EM+N + + + +M
Sbjct: 404 SARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVM 462
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 173 DLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
D AA+LF E + +L TYN ++ + D+ + L ++ + + P++VTY T
Sbjct: 508 DRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQG-LLPNVVTYTT 566
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L+ ++G + + +K + L P+ YN LI + + + Y++M +
Sbjct: 567 LVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVMISDG 626
Query: 292 VMP 294
+ P
Sbjct: 627 LRP 629
>gi|326524964|dbj|BAK04418.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 565
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 89/193 (46%), Gaps = 1/193 (0%)
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSL 212
++K+ + ++ R V A + F + A LK + YN L+ + K ++
Sbjct: 211 LSKDTFRLIVRRYARARKVKEAVETFEKMAGFGLKADLSDYNWLIDVLSKSKQVKKAHAI 270
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
F+++K+ P + TY L+ +G + +++ +QE+ D+ L P+V Y LI+ +
Sbjct: 271 FKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGLQPDVVAYGMLISSFC 330
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
+ + ++++ M+ MP + Y +L+ G L K +EL K E P
Sbjct: 331 KSGKCDEAIKVFREMETNGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVP 390
Query: 333 LIRAMICAYSKCS 345
A++ AY + S
Sbjct: 391 TCNAVVGAYCRSS 403
>gi|297834130|ref|XP_002884947.1| hypothetical protein ARALYDRAFT_897532 [Arabidopsis lyrata subsp.
lyrata]
gi|297330787|gb|EFH61206.1| hypothetical protein ARALYDRAFT_897532 [Arabidopsis lyrata subsp.
lyrata]
Length = 528
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 116/245 (47%), Gaps = 6/245 (2%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+T+ ++NALL AY+ + D+ + F++L ++ I+P +VTYNT+I R +D + +
Sbjct: 158 RTVKSFNALLSAYVNSRKLDEAKKAFKELPEKLGITPDLVTYNTMIKALCRTGSMDDILS 217
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
F+E++ + P++ ++N L+ + ++ + + I+ +MK+ + P+ +Y +RG
Sbjct: 218 IFEELEKNGFEPDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLAPNIRSYNSRVRGLT 277
Query: 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
+ + ++K + A I AY + + + K M+ EK P
Sbjct: 278 RNKKFTDAIDLINVMKTEGISPDVHTYNAFITAYRGDNNLEEVMKWYNEMK---EKGLTP 334
Query: 368 --WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
LLI + K+ L+ + +A +HK ++ + + +V +D+
Sbjct: 335 DTVTYCLLIPLLCKKGDLDRAVEISEEAIKHKL-LSRPNMYKPVVERLMGAGKIDEATQL 393
Query: 426 VKRAE 430
VK +
Sbjct: 394 VKNGK 398
>gi|357125122|ref|XP_003564244.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Brachypodium distachyon]
Length = 502
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/325 (22%), Positives = 129/325 (39%), Gaps = 9/325 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y K I G+ A +LF ++ + +Y AL+ AY +G D+ SL +K
Sbjct: 154 YIKLITMLGKCKQPGKAHELFQAMVDEGCAPNLESYTALVSAYSRSGSFDRAFSLLDRMK 213
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P + TY+ LI D ++ ++ + PN TYN L+ Y A +
Sbjct: 214 ATPGCRPDVQTYSILIKSCLHAYDFDKVKDLLADMACGGIRPNTVTYNTLVDAYGKAGRF 273
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
++E M + PD T LR + SG + ME YE + +
Sbjct: 274 AEMESTLLEMLSEKCKPDVWTMNSTLRAFGSSGQIEMMESCYEKFQASGISPNIKTYNIL 333
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV---LLIRVYAKEDCLEEMEKSINDAF 394
+ +Y K + +++ + M +K Y W V ++I + + LE+ME
Sbjct: 334 LDSYGKAKMYEKMGAVMEYM----QKYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMK 389
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454
+ V + ++ +Y R + V K+ ++ E++ L ++ + Y +
Sbjct: 390 SDRIKPNCVTLC-SLIRAYGRADQVKKIETVLRIIENSDTTLDIVFFNCLVDAYGRVGCL 448
Query: 455 EEMESVLKEMENYKIDCSKKTFWIM 479
EM VL M+ ++ K T M
Sbjct: 449 AEMWDVLNMMKLERVSPDKVTCTTM 473
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/295 (20%), Positives = 128/295 (43%), Gaps = 15/295 (5%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F ++ + P + Y LI++ G+ FQ + D +PN+ +Y L++ Y
Sbjct: 137 VFELMRDQVWYRPYVGIYIKLITMLGKCKQPGKAHELFQAMVDEGCAPNLESYTALVSAY 196
Query: 272 MTAWMWGKVEEIYQMMKAGP-VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+ + + + MKA P PD TY +L++ H+ + +K+ +L+ G
Sbjct: 197 SRSGSFDRAFSLLDRMKATPGCRPDVQTYSILIKSCLHAYDF---DKVKDLLADMACGGI 253
Query: 331 FP---LIRAMICAYSKCSVTDRIKKIEA-LMRLIPEKEYRP--WLNVLLIRVYAKEDCLE 384
P ++ AY K R ++E+ L+ ++ EK +P W +R + +E
Sbjct: 254 RPNTVTYNTLVDAYGKAG---RFAEMESTLLEMLSEK-CKPDVWTMNSTLRAFGSSGQIE 309
Query: 385 EMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSK 444
ME S + F+ ++ ++ SY + +K+ ++ + + Y+
Sbjct: 310 MME-SCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVV 368
Query: 445 MVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
+ + +E+ME + + M++ +I + T + AY Q +K+ VL ++
Sbjct: 369 IDAFGRAGDLEQMEYIFRLMKSDRIKPNCVTLCSLIRAYGRADQVKKIETVLRII 423
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
TI TYN ++ A+ G ++ + +FR L K I P+ VT +LI +GR V +E
Sbjct: 361 TIVTYNVVIDAFGRAGDLEQMEYIFR-LMKSDRIKPNCVTLCSLIRAYGRADQVKKIETV 419
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ I++S+ + ++ +N L+ Y ++ ++ MMK V PD T +++ +
Sbjct: 420 LRIIENSDTTLDIVFFNCLVDAYGRVGCLAEMWDVLNMMKLERVSPDKVTCTTMIKWFLV 479
Query: 309 SG 310
G
Sbjct: 480 KG 481
>gi|255660866|gb|ACU25602.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 484
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+T TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNTITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E++ ++ + + +I ++ K D + +A++RL
Sbjct: 271 MSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNPDAAADVLKAMIRL 320
>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
Length = 817
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 17/247 (6%)
Query: 88 LRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPR------LALEVL 141
++ E+L +D+V G C ++ + F++ M + G +P L +L
Sbjct: 519 IQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLL 578
Query: 142 NWRRRQAG---YG----TPMTKEEYTKGIKFAG--RINNVDLAADLFAEAANKHLK-TIG 191
N + + +G M + YT + G + + LF E + +L+
Sbjct: 579 NMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTV 638
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YN L+GAY +G L D+K + ISP+ TY +LI + V+ + +E
Sbjct: 639 VYNHLIGAYCRSGRLSMALELREDMKHKG-ISPNSATYTSLIKGMSIISRVEEAKLLLEE 697
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ L PNVF Y LI GY KVE + + M + V P+ TY +++ GYA GN
Sbjct: 698 MRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGN 757
Query: 312 LPRMEKI 318
+ ++
Sbjct: 758 VTEASRL 764
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 86/187 (45%), Gaps = 5/187 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
+T I + V+ A +LF++ + + TYN ++ +G D+ +F++
Sbjct: 255 FTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDE-AFMFKEKM 313
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E + P+++TY+ L+ + + +E+ + PNV YN LI + A
Sbjct: 314 VERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSL 373
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE---LVKHHVDGKEFPLI 334
K EI +M + + ++TY L++GY SG E++ + + +V+ F +
Sbjct: 374 NKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSV 433
Query: 335 RAMICAY 341
++C++
Sbjct: 434 ICLLCSH 440
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY +L+ ++ + L +++ E + P++ Y LI +G+L + +E +E
Sbjct: 674 TYTSLIKGMSIISRVEEAKLLLEEMRMEG-LEPNVFHYTALIDGYGKLGQMVKVECLLRE 732
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ N+ PN TY +I GY + + M+ ++PD+ TY + GY G
Sbjct: 733 MHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIYGYLKQGG 792
Query: 312 L 312
+
Sbjct: 793 V 793
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 174 LAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
LA D+F ANK + + T N LL + + KC F + K +SP + + T
Sbjct: 201 LALDVFPVLANKGMFPSKTTCNILLTSLVRATEFQKCCEAFHVVCK--GVSPDVYLFTTA 258
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY----QMMK 288
I+ F + V+ F +++++ + PNV TYN +I G M G+ +E + +M++
Sbjct: 259 INAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGL---GMSGRYDEAFMFKEKMVE 315
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
G V P TY +L++G + R+ Y ++K + K FP
Sbjct: 316 RG-VEPTLITYSILVKGLTKA---KRIGDAYCVLKEMTE-KGFP 354
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ- 250
+YN L+ N D+ +F D + + P TY+ LI LL ++ +E A Q
Sbjct: 534 SYNTLISGCCGNKKLDE-AFMFMDEMVKKGLKPDNYTYSILIR---GLLNMNKVEEAIQF 589
Query: 251 --EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ K + + P+V+TY+ +I G A + ++++ M + + P+T Y L+ Y
Sbjct: 590 WGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCR 649
Query: 309 SGNLPRMEKIYELVKH 324
SG L ++ E +KH
Sbjct: 650 SGRLSMALELREDMKH 665
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/377 (18%), Positives = 141/377 (37%), Gaps = 44/377 (11%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
G+ D + AE + Y+ ++ + G +K LF+++ + I P
Sbjct: 196 GKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRG-IPPDF 254
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTY++++ + +D EA +++ + + PN +TYN LI GY + W + +++
Sbjct: 255 VTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKE 314
Query: 287 MKAGPVMPDTNT-----------------------------------YLLLLRGYAHSGN 311
M+ ++PD T Y ++L GYA G
Sbjct: 315 MRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGC 374
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR---LIPEKEYRPW 368
L M +++L+ + +I AY+ C + D+ I MR + P+
Sbjct: 375 LVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRT 434
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+ L R+ +D +E+ + I+ C++ + ++ K +
Sbjct: 435 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYA-----YHCLIQGFCTHGSLLKAKELISE 489
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+ G L + S + RV + +++ N + + + ++ Y G+
Sbjct: 490 IMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGK 549
Query: 489 RRKVNQVLGLMCKNGYD 505
K +V M G +
Sbjct: 550 MEKALRVFDAMVSAGIE 566
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/328 (18%), Positives = 130/328 (39%), Gaps = 13/328 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANI-SPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
+Y+ LL + G S + L R + + + SP +V Y+T+I F + V+ F+
Sbjct: 184 SYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFK 243
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+ + P+ TY+ ++ A K E + M V+P+ TY L+ GY+ +G
Sbjct: 244 EMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTG 303
Query: 311 NLPRMEKIYELVKHHV---DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
++++ ++ H D ++ +C Y K IK+ + + K P
Sbjct: 304 QWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGK------IKEARDVFDTMAMKGQNP 357
Query: 368 --WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
+ +++ YA + CL +M + D + ++ +Y C +DK
Sbjct: 358 NVFSYTIMLNGYATKGCLVDM-TDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMII 416
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
G + Y + + ++++ +M + + K + + + T
Sbjct: 417 FNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCT 476
Query: 486 CGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
G K +++ + NG + + F S
Sbjct: 477 HGSLLKAKELISEIMNNGMHLDIVFFSS 504
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN +L N D+ LF++L+ N+ +I+T NT+I+ + V+ + F
Sbjct: 641 TYNIVLRGLFKNRCFDEAIFLFKELRA-MNVKINIITLNTMIAGMFQTRRVEEAKDLFAS 699
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
I S L P V TY+ +I + + + E+++ M+ PD+
Sbjct: 700 ISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDS 744
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 12/150 (8%)
Query: 165 FAGRINN------VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
F+ INN V A ++F N L T Y+ L+ Y G +K +F D
Sbjct: 502 FSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVF-DAM 560
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW-- 275
A I P+ V Y TL++ + ++ +D + F+E+ + P+ YN +I G A
Sbjct: 561 VSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRT 620
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ KV + ++M ++G M + TY ++LRG
Sbjct: 621 VPAKV-KFHEMTESGIAM-NKCTYNIVLRG 648
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 2/153 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+I +D LF E K +K + YN ++ G + + F ++ E+ I+ +
Sbjct: 581 KIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMT-ESGIAMNK 639
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TYN ++ + D F+E++ N+ N+ T N +IAG + ++++
Sbjct: 640 CTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFAS 699
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ ++P TY +++ G + E ++
Sbjct: 700 ISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMF 732
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 60/303 (19%), Positives = 116/303 (38%), Gaps = 59/303 (19%)
Query: 175 AADLFAEAANK--HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
A +L +E N HL + +++++ G Q++F DL + P+ V Y+ L
Sbjct: 483 AKELISEIMNNGMHLDIV-FFSSIINNLCKLGRVMDAQNIF-DLTVNVGLHPTAVVYSML 540
Query: 233 ISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQM 286
+ + LV ME A F + + + PN Y L+ GY G+++E +++
Sbjct: 541 MDGY---CLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCK---IGRIDEGLSLFRE 594
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
M + P T Y +++ G +G +P K +E+ + + A +KC+
Sbjct: 595 MLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGI-------------AMNKCT 641
Query: 346 VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIND--AFEHKTSVTTV 403
+++R K C +E + A K ++ T+
Sbjct: 642 YN------------------------IVLRGLFKNRCFDEAIFLFKELRAMNVKINIITL 677
Query: 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463
M ++ F+ V++ + +G C Y + + VEE E +
Sbjct: 678 NTM---IAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSS 734
Query: 464 MEN 466
M+N
Sbjct: 735 MQN 737
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 100/250 (40%), Gaps = 10/250 (4%)
Query: 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM--PDTNTYLLLLRGYAHSGNLPRME 316
P+VF+Y+ L+ G+ +++ +MM G + PD Y ++ G+ G++ +
Sbjct: 180 PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKAC 239
Query: 317 KIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLL 373
++ E+V+ + +F +++ A K D K EA +R + K P W L
Sbjct: 240 DLFKEMVQRGIP-PDFVTYSSVVHALCKARAMD---KAEAFLRQMVNKGVLPNNWTYNNL 295
Query: 374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
I Y+ +E + + H + V + ++ S + + + + G
Sbjct: 296 IYGYSSTGQWKEAVRVFKEMRRHSI-LPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKG 354
Query: 434 WRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVN 493
Y + YA++ + +M + M I TF ++ AYA CG K
Sbjct: 355 QNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAM 414
Query: 494 QVLGLMCKNG 503
+ M +G
Sbjct: 415 IIFNEMRDHG 424
>gi|168047776|ref|XP_001776345.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672305|gb|EDQ58844.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 503
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 121/287 (42%), Gaps = 40/287 (13%)
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA---WMW 277
N+ ++V YN LI +GR+ ++ E E+++ + PNV TYN LI GY+ A +
Sbjct: 204 NVPFNVVIYNILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQF 263
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
E + + M+A + PD T+ +LL Y H G + E+++ +K A+
Sbjct: 264 VVAEGLIEEMEASGLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTAL 323
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397
I AY++ R PEK R + +IR ++ +N E
Sbjct: 324 INAYAE--------------RRCPEKAARAF---EMIR-----------KQGVNPTVETY 355
Query: 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
T+ ++ +Y R ++ + K + G R Y + + + Q R +E
Sbjct: 356 TA---------LLDAYRRAGDLEMVQAVWKSMKVEGCVATRVTYMTILDAFQKQGRYKEA 406
Query: 458 ESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
+++E +N + ++ +Y G+ K + +L M G+
Sbjct: 407 RDLIEEFKNQGHKPDLMVYNMLLNSYMRGGRHVKASDILLEMKTAGF 453
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 5/161 (3%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDK---CQSLFRDLKKEANI 222
GR+ ++ A L E + ++ +GTYNAL+ Y+ + + L +++ + +
Sbjct: 220 GRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEA-SGL 278
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
P +VT+ L+ +G L + E F +K + PN ++Y LI Y K
Sbjct: 279 YPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKAAR 338
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
++M++ V P TY LL Y +G+L ++ +++ +K
Sbjct: 339 AFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMK 379
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ TY ALL AY G + Q++++ +K E ++ + VTY T++ F +
Sbjct: 351 TVETYTALLDAYRRAGDLEMVQAVWKSMKVEGCVA-TRVTYMTILDAFQKQGRYKEARDL 409
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
+E K+ P++ YN L+ YM K +I MK +PD+ TY L+ G+
Sbjct: 410 IEEFKNQGHKPDLMVYNMLLNSYMRGGRHVKASDILLEMKTAGFLPDSFTYCTLIYGF 467
>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
gi|219887141|gb|ACL53945.1| unknown [Zea mays]
Length = 522
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 134/326 (41%), Gaps = 33/326 (10%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLK---------KEANISPSIVTYNTLISVFGRLLLVD 243
YN L+ Y CQ RDL+ K +I P +TYN LI+ +L +V
Sbjct: 194 YNTLINGY--------CQ--VRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVT 243
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
E E++ S + P+V T+N LI Y TA K + M+ + D ++ ++
Sbjct: 244 KAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVV 303
Query: 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
+ + +G +P I + + + + ++I AY + T++ L+ EK
Sbjct: 304 KAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQ-------AFLLVEK 356
Query: 364 EYRPWLNV------LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN 417
++ LL++ + ++E E+ I ++ V I+S+
Sbjct: 357 MKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIY-TLRNQGLRPDVVSYNTIISACCNKG 415
Query: 418 AVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW 477
DK ++ G R YH+ + AS RV +ME + ++M + ++ S +
Sbjct: 416 DTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYG 475
Query: 478 IMYYAYATCGQRRKVNQVLGLMCKNG 503
IM AY C KV + M + G
Sbjct: 476 IMVDAYVRCENDSKVASLKKEMSEKG 501
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 134/329 (40%), Gaps = 52/329 (15%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN ++ +G +F ++ + + P+ +TYNT+I G + D +EA F+
Sbjct: 18 SYNVVIAGLWRSGKGSDALKVFDEMV-DMGVVPNWITYNTMID--GHVKGGD-LEAGFR- 72
Query: 252 IKDSNL----SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
++D L PN+ TYN L++G A + + M + + PD TY +L G
Sbjct: 73 LRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLT 132
Query: 308 HSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
+G M ++ E +K V M+ AY+ CS+
Sbjct: 133 RTGESRTMLSLFAESLKKGV----------MLGAYT-CSI-------------------- 161
Query: 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L+ K+ + + E+ + + H V T I +++ Y C D F
Sbjct: 162 ------LLNGLCKDGKVAKAEQVL-EMLVHTGLVPTTVIYNTLINGY--CQVRDLRGAFC 212
Query: 427 --KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
++ +S R Y++ + V + E ++ EME +D S +TF + AY
Sbjct: 213 IFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYG 272
Query: 485 TCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
T GQ K VL M + G V +F S
Sbjct: 273 TAGQLEKCFTVLSDMQQKGIKSDVISFGS 301
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 113/283 (39%), Gaps = 23/283 (8%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ ++ G + L RD P+IVTYN L+S R +D E
Sbjct: 53 TYNTMIDGHVKGGDLEAGFRL-RDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDE 111
Query: 252 IKDSNLSPNVFTYNYLIAGYM-TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ ++ P+ FTY+ L G T + + +K G VM T +LL G G
Sbjct: 112 MASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKG-VMLGAYTCSILLNGLCKDG 170
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--- 367
+ + E++ E++ H + +I Y C V D ++ + + + RP
Sbjct: 171 KVAKAEQVLEMLVHTGLVPTTVIYNTLINGY--CQVRD-LRGAFCIFEQMKSRHIRPDHI 227
Query: 368 ----WLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
+N L L V ED + EMEKS D +V ++ +Y ++K
Sbjct: 228 TYNALINGLCKLEMVTKAEDLVMEMEKSGVDP--------SVETFNTLIDAYGTAGQLEK 279
Query: 422 LANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
+ + G + + S + + ++ E ++L +M
Sbjct: 280 CFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDM 322
>gi|302819015|ref|XP_002991179.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
gi|300141007|gb|EFJ07723.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
Length = 561
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 135/332 (40%), Gaps = 18/332 (5%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y +L AY +G DK + +F+ + E ++ +I Y I +GR D EA FQ +
Sbjct: 157 YFLVLLAYCKDGQVDKTEGIFQRMA-ELGVAANIEMYTLQIEGYGRRRSFDKAEAVFQRL 215
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP---VMPDTNTYLLLLRGYAHS 309
+ SP TY ++ Y A V+ I++++ P V PD Y L++ Y
Sbjct: 216 LTTGPSPTAQTYQTMMKSYSEAGRLDDVQRIFKLVTDSPSPTVKPDARMYNLMIHTYGKQ 275
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMI-CAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G + + +Y+ +K +++ C + D +K++A +L P+ +
Sbjct: 276 GKVEQAMSVYQSMKRERVALTIVTFNSLLACQKTWKDAEDVFRKLQA-AKLDPDV----F 330
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
L+ YAK E + +D T V ++++Y +C + +K+
Sbjct: 331 SYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQV-AYNALINAYAKCKDPEGARAVLKQ 389
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+ G Y S + Y S + + E + M+ + + +TF I+ YA +
Sbjct: 390 MKQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLRMKEADLQPNLQTFCILMTGYANGNK 449
Query: 489 RRKVNQVLGLMCKNG-------YDVPVNAFPS 513
+ + M G Y V VNA+ S
Sbjct: 450 LDNMMRSFETMKLAGLEPNRHVYTVLVNAYGS 481
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
Query: 175 AADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A D+F + A K + +Y AL+ AY ++ + F D+ A I P+ V YN LI
Sbjct: 313 AEDVFRKLQAAKLDPDVFSYTALVNAYAKARRAECAHAAFDDMIA-AGIRPTQVAYNALI 371
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ + + + A +++K + +P V +Y LI+ Y++ + K E+ MK +
Sbjct: 372 NAYAKCKDPEGARAVLKQMKQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLRMKEADLQ 431
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
P+ T+ +L+ GYA+ L M + +E +K
Sbjct: 432 PNLQTFCILMTGYANGNKLDNMMRSFETMK 461
>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
Length = 547
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 106/259 (40%), Gaps = 43/259 (16%)
Query: 125 ELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDL---------- 174
E++K L + LAL W RQ G+ T E + I+ G+I L
Sbjct: 132 EVLKNLSNAGMLALAFFRWAERQEGFS--YTAEGFHNLIEALGKIKQFRLVWSLVETMRC 189
Query: 175 ------------------------AADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKC 209
A + F + + LKT + YN L+ + K
Sbjct: 190 RGLLSKDTFKLIVRRYARARKVKEAVETFEKMSIFGLKTELSDYNWLIDTLSKSKQVKKA 249
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGR---LLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
Q++++++K++ P + TY L+ +G LL+V M +QE+ D+ + P+V Y
Sbjct: 250 QAIYKEMKRKGKFVPDLKTYTVLMEGWGHEKDLLMVKTM---YQEMIDAGIRPDVVAYGM 306
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
LI+ + + + +++ M+A MP + Y +L+ G L K +E K
Sbjct: 307 LISAFCKSGKCDEAIKVFYEMEASGCMPSPHVYCMLINGLGSEERLDEALKYFEHYKKSG 366
Query: 327 DGKEFPLIRAMICAYSKCS 345
E P A++ AY + S
Sbjct: 367 FPMEVPTCNAVVGAYCRAS 385
>gi|116789832|gb|ABK25404.1| unknown [Picea sitchensis]
Length = 278
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K A I PS+ TYNT+ISV+G+ + + F ++ S LS + TY+ +I+ Y A +
Sbjct: 2 KAAGIVPSLQTYNTMISVYGKARELQNAVQIFNSLQKSGLSVDEKTYSNMISCYGKAGFF 61
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+++ M+ + P TY +L YA SG R E+++ ++ + ++
Sbjct: 62 QDAAKLFSRMQQEGIKPGKVTYNTMLDAYARSGLHTRAEEVFNDMQDEGYSPDSYTYLSL 121
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
ICAY+ C R ++ E L++ + + P L
Sbjct: 122 ICAYTNCQ---RFQEAEDLLKRMHRQGLAPGL 150
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ ++ Y G LF +++E I P VTYNT++ + R L E F +
Sbjct: 47 TYSNMISCYGKAGFFQDAAKLFSRMQQEG-IKPGKVTYNTMLDAYARSGLHTRAEEVFND 105
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++D SP+ +TY LI Y + + E++ + M + P + L+ + +G
Sbjct: 106 MQDEGYSPDSYTYLSLICAYTNCQRFQEAEDLLKRMHRQGLAPGLVHFNHLVFAFGKAGL 165
Query: 312 LPRMEKIY 319
+ ++Y
Sbjct: 166 VEDATRLY 173
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 86/192 (44%), Gaps = 5/192 (2%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNA 195
A+++ N ++ G + ++ Y+ I G+ AA LF+ + +K TYN
Sbjct: 29 AVQIFNSLQKS---GLSVDEKTYSNMISCYGKAGFFQDAAKLFSRMQQEGIKPGKVTYNT 85
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
+L AY +GL + + +F D++ E SP TY +LI + E + +
Sbjct: 86 MLDAYARSGLHTRAEEVFNDMQDEG-YSPDSYTYLSLICAYTNCQRFQEAEDLLKRMHRQ 144
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
L+P + +N+L+ + A + +Y + + D + +L+ Y +G
Sbjct: 145 GLAPGLVHFNHLVFAFGKAGLVEDATRLYMEIGKAGLKSDLACHRTMLKIYRDNGRTHEG 204
Query: 316 EKIYELVKHHVD 327
++E ++++++
Sbjct: 205 ILLFEKLQNYIE 216
>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
Length = 457
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 3/195 (1%)
Query: 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALL 197
E ++ R G P Y I + ++ A LF E K + T+ TYN+LL
Sbjct: 140 EAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLL 199
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
+ G + QSLF+D+ ++ + P+I T+N L+ F ++ + F E++
Sbjct: 200 SGFSRKGEFGRVQSLFKDMLRQGCV-PNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGC 258
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
P+V +YN L+ G + + + + + M V PD +Y +L+ GY+ SG L K
Sbjct: 259 PPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIK 318
Query: 318 I-YELVKHHVDGKEF 331
+ YE+ K ++ F
Sbjct: 319 LFYEIPKSGLEPDAF 333
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 130/321 (40%), Gaps = 42/321 (13%)
Query: 51 CAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKG 110
C P T+T + L+R L + + +AR VFR + +G
Sbjct: 48 CVPNTYT-YGYLLRSLCQAQRFEEAR------------------------SVFRGMAAQG 82
Query: 111 SCLFRRHSNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR 168
N +++ L+ L G + A E+LN +T G+ G+
Sbjct: 83 C-----SPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137
Query: 169 INNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+ A DLF+ + G YN L+ + G + LF ++ ++ I P++
Sbjct: 138 LKE---AVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCI-PTVF 193
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TYN+L+S F R +++ F+++ PN+FT+N L+ G+ + ++ M
Sbjct: 194 TYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEM 253
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSV 346
++ PD +Y L+RG G +++ E+++ V G + +I YSK
Sbjct: 254 RSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGV-GPDIVSYNILIDGYSKSGA 312
Query: 347 TDRIKKIEALMRLIPEKEYRP 367
D K L IP+ P
Sbjct: 313 LDHAIK---LFYEIPKSGLEP 330
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 65/143 (45%), Gaps = 4/143 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN L+ G + Q L R++ + + + P IV+YN LI + + +DH F E
Sbjct: 264 SYNTLMRGMCSKGKPHEAQRLLREMIR-SGVGPDIVSYNILIDGYSKSGALDHAIKLFYE 322
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
I S L P+ F+Y+ +I A G +++ M A PD + L+ G
Sbjct: 323 IPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRG-- 380
Query: 312 LPRMEKIYELVKHHVDGKEFPLI 334
R+ + EL + V + PLI
Sbjct: 381 -ERLTESCELFQAMVKFECVPLI 402
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 16/145 (11%)
Query: 191 GTYNALLGA------YMYNGL-SDKCQ--------SLFRDLKKEANISPSIVTYNTLISV 235
GTYN +LGA Y Y L CQ S+FR + + SP++ +Y+ LI+
Sbjct: 38 GTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQG-CSPNVFSYSILIAG 96
Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
R VD E+ D PNV TY L++G + +++ M PD
Sbjct: 97 LCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPD 156
Query: 296 TNTYLLLLRGYAHSGNLPRMEKIYE 320
Y +L+ G++ G++ +++E
Sbjct: 157 GVVYNVLIDGFSKKGDMGEAYRLFE 181
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 96/222 (43%), Gaps = 12/222 (5%)
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+ F+ + + + ++YN L+ V + DH+ + ++ + PN +TY YL+
Sbjct: 2 AFFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRS 61
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
A + + +++ M A P+ +Y +L+ G ++++ EL+ +DG
Sbjct: 62 LCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRG---QKVDEAAELLNEMIDGGH 118
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR--PWLNV---LLIRVYAKEDCLEE 385
P + + S S ++ K++ + L YR P V +LI ++K+ + E
Sbjct: 119 QPNV---VTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGE 175
Query: 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
+ + E K + TV ++S + R ++ + K
Sbjct: 176 AYRLFEEMLE-KGCIPTVFTYNSLLSGFSRKGEFGRVQSLFK 216
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 123/301 (40%), Gaps = 18/301 (5%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
N+D A F N + TY L+ G ++ +F ++K E N SP +
Sbjct: 336 GNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMK-ENNCSPDAIA 394
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YNTLI G+ D F+E+KD L PN+ TYN +I+ A + +++ +K
Sbjct: 395 YNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLK 454
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+PD TY L+ G +M+K+ ++K V+ + C S+ S
Sbjct: 455 EQGAVPDVFTYNTLIDVLGKGG---QMDKVLAIIKEMVE-------KGGECIISRDSNAG 504
Query: 349 RIKKIEALMRLI--PEKEYRPWLNV---LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV 403
IE R + P ++ + L+ + ++E K + +H+ + TV
Sbjct: 505 HEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHEC-IPTV 563
Query: 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463
+V + +D+ + ++ E G Y S M + + + EE S+ E
Sbjct: 564 VTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDE 623
Query: 464 M 464
M
Sbjct: 624 M 624
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 95/200 (47%), Gaps = 9/200 (4%)
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
A+ LM LG +L+ ++ +R P Y+ I G+ V+ A F
Sbjct: 775 AYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVT-YSSLIDSLGKEGRVEEAYYFFEN 833
Query: 182 AANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
+ +K +G Y++L+ ++ G+ D+ LF ++++ P+IVTYN L+S +
Sbjct: 834 SISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRR-QCPPNIVTYNNLLSGLAKAG 892
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
++ E +E++ P++ TYN LI G M + E ++ MK ++PD T+
Sbjct: 893 RLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFT 952
Query: 301 LLLRGYAHSGNLPRMEKIYE 320
L+ +L +++K+ E
Sbjct: 953 SLIE------SLGKVDKLLE 966
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 111/257 (43%), Gaps = 9/257 (3%)
Query: 121 YAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
+ + L+ LG RL E N + G YT + G+ + A +F
Sbjct: 739 FTYTSLLDGLGKSGRLE-EAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFR 797
Query: 181 EAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
A K + + TY++L+ + G ++ F + +P++ Y++LI FG+
Sbjct: 798 AMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFEN-SISKGCTPNVGVYSSLIDSFGKK 856
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
+VD F+E++ PN+ TYN L++G A E++ + M+ +PD TY
Sbjct: 857 GMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTY 916
Query: 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359
+L+ G G + E ++ +K + ++I + K D++ + L
Sbjct: 917 NILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGK---VDKLLEACELFDS 973
Query: 360 IPEKEYRPWL---NVLL 373
+ E+ Y P + NVL+
Sbjct: 974 MEEEGYNPSVVTYNVLI 990
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 125/301 (41%), Gaps = 18/301 (5%)
Query: 178 LFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
LF E K + + TY+ ++ + D+ +F +K+E + P + Y TL+S
Sbjct: 620 LFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEG-MEPLLGNYKTLLSSL 678
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
+ +D F E+++S+L P+ F YN ++ G + + + ++ MK ++PD
Sbjct: 679 VKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDL 738
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
TY LL G SG R+E+ + + + P + A ++ +
Sbjct: 739 FTYTSLLDGLGKSG---RLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALII 795
Query: 357 MRLIPEKEYRPWLNVL--LIRVYAKEDCLEE----MEKSINDAFEHKTSVTTVRIMRCIV 410
R + +K P + LI KE +EE E SI+ K V + ++
Sbjct: 796 FRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSIS-----KGCTPNVGVYSSLI 850
Query: 411 SSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID 470
S+ + VD+ + + Y++ + A R+ E +L+EME K+
Sbjct: 851 DSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEME--KVG 908
Query: 471 C 471
C
Sbjct: 909 C 909
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 27/180 (15%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG----- 191
ALE+ +R+ +T G+ AGR+N AE + ++ +G
Sbjct: 862 ALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLN--------VAEKLLEEMEKVGCVPDL 913
Query: 192 -TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA-- 248
TYN L+ G+ D+ +S F+ +K E I P ++T+ +LI G+ VD + A
Sbjct: 914 VTYNILIDGVGKMGMVDEAESYFKRMK-EKGIVPDVITFTSLIESLGK---VDKLLEACE 969
Query: 249 -FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLR 304
F +++ +P+V TYN LI A GKV E I+ MK MPD T ++ R
Sbjct: 970 LFDSMEEEGYNPSVVTYNVLIDILGRA---GKVHEAAMIFHEMKVKGCMPDGITIGIMKR 1026
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+ + ++ +G D +++ K + I P + T+ LI + +D F
Sbjct: 289 TFRIFVHSFNRSGRLDPAAEPIQEMIK-SGIDPGVHTFTVLIDALVKSGNIDEACKFFNG 347
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+K+ SPNV TY L+ G A + E++ MK PD Y L+ G +G
Sbjct: 348 MKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAG 406
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 12/159 (7%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGT------YNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G NNV A ++F +K+ G YN +L + G +F L +
Sbjct: 228 GSTNNVSGALEIF-----NQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLG-QF 281
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
I P T+ + F R +D QE+ S + P V T+ LI + + +
Sbjct: 282 RIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEA 341
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ + MK P+ TY L+ G A +G L +++
Sbjct: 342 CKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVF 380
>gi|449530158|ref|XP_004172063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Cucumis sativus]
Length = 608
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 95/195 (48%), Gaps = 8/195 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY + + AY GL K + +F +++ E +V Y++LIS++G+ + +
Sbjct: 402 TYASAINAYCRVGLYSKAEDIFGEME-EKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAK 460
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K+ PNV+ YN L+ + A +VE++++ MK + PD +Y ++ Y +
Sbjct: 461 MKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVKASE 520
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL----IPEKEYRP 367
+ E+ Y + + + M+ +SK S D + K+ M+L + E+ YR
Sbjct: 521 FEKCEQYYREFRMNGGTIDKAFGGIMVGVFSKTSRVDELVKLLRDMKLEGTRLDERLYRT 580
Query: 368 WLNVLL---IRVYAK 379
LN L+ ++V AK
Sbjct: 581 ALNALMDAGLQVQAK 595
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 130/312 (41%), Gaps = 16/312 (5%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT--YNTLISVFGRLLLVDHMEAA 248
G Y ++ AY+ G S++ LF +++ + S T Y L + V
Sbjct: 223 GCYCRVMEAYLKLGDSERVMELFNEVESRISDSTPFSTKIYGILCESLAKSGRVFESLEF 282
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F++++ ++ + Y+ LI + + E++Y KA ++ D +L L+ Y
Sbjct: 283 FRDMRKKGIAEDYTIYSALICTFASIQEVKLAEDLYNEAKAKKLLRDPAMFLKLILMYVQ 342
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAY-SKCSVTDRIKKIEALMRLIPEK---E 364
G+L + +I E++K G + A++ Y ++ +K E L+ E
Sbjct: 343 QGSLEKALEIVEVMKDFKIGVSDCIFCAIVNGYATRRGYEAAVKVYEKLIEDGCEPGQVT 402
Query: 365 YRPWLNVLL-IRVYAK-EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
Y +N + +Y+K ED EME+ D V ++S Y + +
Sbjct: 403 YASAINAYCRVGLYSKAEDIFGEMEEKGFD--------KCVVAYSSLISMYGKTGRLKDA 454
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482
+ + + G + +Y+ M M+ + ++++E + KEM+ KI K ++ + A
Sbjct: 455 MRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISA 514
Query: 483 YATCGQRRKVNQ 494
Y + K Q
Sbjct: 515 YVKASEFEKCEQ 526
>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 85/401 (21%), Positives = 157/401 (39%), Gaps = 27/401 (6%)
Query: 41 SPNHSFT------RDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLA 94
S NH+F R+LC + + + PD+ + + L + A
Sbjct: 104 SINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSS--------YA 155
Query: 95 NVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPM 154
+ LD L+E + + + + L+ L + + VL +R Y P
Sbjct: 156 RMGKLDSAKNFLNEVHC--YGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVP- 212
Query: 155 TKEEYTKGIKFAG--RINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQS 211
+ Y+ I G RI +D A + F N I +YN L+ + K
Sbjct: 213 --DVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHD 270
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
L ++ +SP ++TY ++IS + +L + F E+ S + PN FT+N LI G+
Sbjct: 271 LLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGF 330
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
+Y+ M +PD T+ L+ GY G + + K++E +K
Sbjct: 331 GKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNV 390
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY--RPWLNVLLIRVYAKEDCLEEMEKS 389
+I A K +RI++ +R + E +P++ +I + K ++E
Sbjct: 391 YTYAVLINALCK---ENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFI 447
Query: 390 INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
+ + E K + I+ + + V+ ++ F K E
Sbjct: 448 VAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIE 488
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 88/225 (39%), Gaps = 35/225 (15%)
Query: 113 LFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV 172
FR HS F L + L P +A EV+ + P+ G+KF
Sbjct: 57 FFRSHSLNACFGYLSRNL--NPSIAFEVIKR------FSDPLL------GLKFF------ 96
Query: 173 DLAADLFAEAANKHLK---TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
E + HL T TY+ L+ GL+D + +F D + I P
Sbjct: 97 --------EFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVF-DCMRSDGILPDSSIL 147
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
L+S + R+ +D + E+ + + F YN L+ + + + +++
Sbjct: 148 ELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLE 207
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
+PD ++ +L+RG G ++K +E ++ + FP I
Sbjct: 208 PYFVPDVYSFNILIRGLCRIG---EIDKAFEFFQNMGNFGCFPDI 249
>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Cucumis sativus]
Length = 548
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 85/401 (21%), Positives = 157/401 (39%), Gaps = 27/401 (6%)
Query: 41 SPNHSFT------RDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLA 94
S NH+F R+LC + + + PD+ + + L + A
Sbjct: 104 SINHTFNTYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSS--------YA 155
Query: 95 NVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPM 154
+ LD L+E + + + + L+ L + + VL +R Y P
Sbjct: 156 RMGKLDSAKNFLNEVHC--YGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVP- 212
Query: 155 TKEEYTKGIKFAG--RINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQS 211
+ Y+ I G RI +D A + F N I +YN L+ + K
Sbjct: 213 --DVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHD 270
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
L ++ +SP ++TY ++IS + +L + F E+ S + PN FT+N LI G+
Sbjct: 271 LLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGF 330
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
+Y+ M +PD T+ L+ GY G + + K++E +K
Sbjct: 331 GKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNV 390
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY--RPWLNVLLIRVYAKEDCLEEMEKS 389
+I A K +RI++ +R + E +P++ +I + K ++E
Sbjct: 391 YTYAVLINALCK---ENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFI 447
Query: 390 INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
+ + E K + I+ + + V+ ++ F K E
Sbjct: 448 VAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIE 488
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 88/225 (39%), Gaps = 35/225 (15%)
Query: 113 LFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV 172
FR HS F L + L P +A EV+ + P+ G+KF
Sbjct: 57 FFRSHSLNACFGYLSRNL--NPSIAFEVIKR------FSDPLL------GLKFF------ 96
Query: 173 DLAADLFAEAANKHLK---TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
E + HL T TY+ L+ GL+D + +F D + I P
Sbjct: 97 --------EFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAKIVF-DCMRSDGILPDSSIL 147
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
L+S + R+ +D + E+ + + F YN L+ + + + +++
Sbjct: 148 ELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLE 207
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
+PD ++ +L+RG G ++K +E ++ + FP I
Sbjct: 208 PYFVPDVYSFNILIRGLCRIG---EIDKAFEFFQNMGNFGCFPDI 249
>gi|255660862|gb|ACU25600.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 484
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E++ ++ + +I +I ++ K D + +A++RL
Sbjct: 271 MSEARVILKEMMDKYLAPTDNSIIMRLISSHCKSGNLDAAADVLKAMIRL 320
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Query: 170 NNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
N VD A L E A L I TYN L+ G + + LF D+K + +P ++T
Sbjct: 301 NGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKF-CNPDVIT 359
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y+ LI F +L +D F ++ + P+V T++ L+ GY A + E + + M
Sbjct: 360 YSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMV 419
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
A PD TY L+ G+ G + ++
Sbjct: 420 ASDCSPDVYTYTSLVDGFCKVGRMVEARRV 449
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+G + D ++LF D+ K+A + P +VT++TL+ + LVD E +E
Sbjct: 359 TYSCLIGGFCKLERIDMARTLFDDMLKQA-VLPDVVTFSTLVEGYCNAGLVDDAERLLEE 417
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ S+ SP+V+TY L+ G+ + + + M P+ TY L+ + +G
Sbjct: 418 MVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAG 476
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ + + L +++K E+ ++P++VTY+T+I F R VD F++
Sbjct: 44 TYNVLINGFCKVHKVHRAYLLLKEMK-ESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQ 102
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ ++ PN+ TYN L++G + + E+ M+ + PD +Y L+ G +G
Sbjct: 103 MVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGK 162
Query: 312 LPRMEKIYE 320
+ K++E
Sbjct: 163 IDMALKVFE 171
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 4/176 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ ++ + D LFR + E P++VTYNTL+S R L+D E
Sbjct: 79 TYSTVIHGFCRQTKVDTAYKLFRQMV-ENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDE 137
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ L P+ F+Y+ L+AG ++++ G PD Y L+ G +G
Sbjct: 138 MRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGR 197
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
L K++E ++ + + A++ K DR+++ + ++ + ++ P
Sbjct: 198 LDEACKLFEKMRENSCEPDVVTFTALMDGLCK---GDRLQEAQQVLETMEDRNCTP 250
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 9/202 (4%)
Query: 123 FVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
F LM L G R + A +VL + +T G+ G++ + A ++F
Sbjct: 220 FTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRD---AQEVFK 276
Query: 181 EAANKHLK-TIGTYNALL-GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238
+ ++ + TYN+L+ G M NG+ D L ++ + P I+TYNTLI +
Sbjct: 277 RMIVRGIEPNVVTYNSLIHGFCMTNGV-DSALLLMEEMTATGCL-PDIITYNTLIDGLCK 334
Query: 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298
F ++K +P+V TY+ LI G+ ++ M V+PD T
Sbjct: 335 TGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVT 394
Query: 299 YLLLLRGYAHSGNLPRMEKIYE 320
+ L+ GY ++G + E++ E
Sbjct: 395 FSTLVEGYCNAGLVDDAERLLE 416
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 2/154 (1%)
Query: 168 RINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
++ +D+A LF + + L + T++ L+ Y GL D + L ++ ++ SP +
Sbjct: 369 KLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVA-SDCSPDV 427
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TY +L+ F ++ + + + PNV TY LI + A ++ +
Sbjct: 428 YTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEE 487
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
M V P+ TY L+ G+ +G+L K+ E
Sbjct: 488 MVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLE 521
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 79/197 (40%), Gaps = 35/197 (17%)
Query: 159 YTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I R VD A LF + N + + TYN LL NGL D+ L +++
Sbjct: 80 YSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMR 139
Query: 218 K----------------------------------EANISPSIVTYNTLISVFGRLLLVD 243
+ + P +V Y+TLI+ + +D
Sbjct: 140 ERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLD 199
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
F+++++++ P+V T+ L+ G + +++ + M+ P+ TY L+
Sbjct: 200 EACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLI 259
Query: 304 RGYAHSGNLPRMEKIYE 320
G +G + +++++
Sbjct: 260 DGLCKTGQVRDAQEVFK 276
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 2/130 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY AL+ A+ G L ++ + P+++TY +LI F ++ +
Sbjct: 464 TYTALIDAFCRAGKPTVAYKLLEEMVGNG-VQPNVITYRSLIGGFCGTGDLEEARKMLER 522
Query: 252 I-KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ +D N ++F Y ++ G E+ + +K P + Y+ L+RG
Sbjct: 523 LERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGK 582
Query: 311 NLPRMEKIYE 320
L + ++ E
Sbjct: 583 ELGKAMEVLE 592
>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial [Vitis vinifera]
gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 85/392 (21%), Positives = 163/392 (41%), Gaps = 30/392 (7%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVD--LAADLFAEAANKHLKTIGTY- 193
AL +++ RR G P Y+ I+ R N D + ++AE + ++ G
Sbjct: 203 ALNLMSRMRRD---GFPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLL 259
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
N ++ + +G ++ S F + + +SP T +I+ G + EA F+E+K
Sbjct: 260 NDIIVGFAKSGDVNRAMS-FLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELK 318
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
+ L P YN L+ GY+ E I M+ PD +TY LL+ YA++G
Sbjct: 319 EGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAG--- 375
Query: 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSK--CSVTDRIK-----KIEALMRLIPEKEYR 366
R E ++K E +R +S+ S DR K ++ MR R
Sbjct: 376 RWESARIVLKEM----EASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDR 431
Query: 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
+ NV +I + K +CL+ + D + ++ + + +K
Sbjct: 432 HFYNV-MIDTFGKCNCLDHALATF-DRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELF 489
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
+ + +G C + Y+ + + Q R E+++++L +M++ + + T+ + Y
Sbjct: 490 EAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQS 549
Query: 487 GQRRKVNQVLGLMCKNG-------YDVPVNAF 511
G+ + + L +M G Y+ +NA+
Sbjct: 550 GRFKDAIECLEVMKSVGLKPSSTMYNALINAY 581
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YNAL+ AY GLS++ + FR ++ + + PS++ N+LI+ FG + Q +
Sbjct: 574 YNALINAYAQRGLSEQAINAFRVMRADG-LKPSVLVLNSLINAFGEDRRDAEAFSVLQYM 632
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
K+++L P+V TY L+ + + KV +Y+ M PD
Sbjct: 633 KENDLKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPD 675
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 7/195 (3%)
Query: 119 NGYAFVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAA 176
N Y F ++ R + + +VL R G + Y I G+ N +D A
Sbjct: 395 NSYVFSRILASYRDRGKWQKSFQVL---REMRNSGVSPDRHFYNVMIDTFGKCNCLDHAL 451
Query: 177 DLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
F + ++ T+N L+ + +G +K + LF ++ E+ SP TYN +I+
Sbjct: 452 ATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQ-ESGCSPCTTTYNIMINS 510
Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
FG + ++ +++ L NV TY L+ Y + + E ++MK+ + P
Sbjct: 511 FGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKSVGLKPS 570
Query: 296 TNTYLLLLRGYAHSG 310
+ Y L+ YA G
Sbjct: 571 STMYNALINAYAQRG 585
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 3/135 (2%)
Query: 187 LKTIGTYNALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM 245
L + TY L+ Y +G D + L ++ K + PS YN LI+ + + L +
Sbjct: 533 LANVVTYTTLVDIYGQSGRFKDAIECL--EVMKSVGLKPSSTMYNALINAYAQRGLSEQA 590
Query: 246 EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
AF+ ++ L P+V N LI + + + Q MK + PD TY L++
Sbjct: 591 INAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKA 650
Query: 306 YAHSGNLPRMEKIYE 320
++ +YE
Sbjct: 651 LIRVEKFDKVPAVYE 665
>gi|357128238|ref|XP_003565781.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Brachypodium distachyon]
Length = 547
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 91/193 (47%), Gaps = 1/193 (0%)
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSL 212
++K+ + ++ R V A + F + ++ LK + YN L+ + K ++
Sbjct: 193 LSKDTFRLIVRRYARARKVKEAVETFEKMSSFGLKADLSDYNWLIDVLSKSKQVKKAHAI 252
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
F+++K+ P + TY L+ +G + +++ +QE+ D+ + P+V Y LI+ +
Sbjct: 253 FKEMKRNGRFVPDLKTYTVLMEGWGHEKDLLMLKSVYQEMLDAGIKPDVVAYGTLISSFC 312
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
+ + ++++ M+A MP + Y +L+ G L K +EL K E P
Sbjct: 313 KSGKCDEAIKVFREMEANGCMPSPHVYCMLINGLGSEERLDEALKYFELSKASGFPMEVP 372
Query: 333 LIRAMICAYSKCS 345
A++ AY + S
Sbjct: 373 TCNAVVGAYCRSS 385
>gi|297736801|emb|CBI26002.3| unnamed protein product [Vitis vinifera]
Length = 469
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/362 (22%), Positives = 140/362 (38%), Gaps = 43/362 (11%)
Query: 137 ALEVLNWRRRQAGYGTPMTKE-EYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYN 194
ALEV R Q Y KE Y K + G+ A +LF + + T Y
Sbjct: 127 ALEVFEMLREQPFY---QPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYT 183
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
ALL +Y + L D+ S+ +K P + TY+TL+ + +E+ ++E+
Sbjct: 184 ALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEMDV 243
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ-MMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
+++PN T N +++GY A + ++E++ M+++ PD T +L + + G +
Sbjct: 244 RSITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIE 303
Query: 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL- 372
MEK YE ++ E +I AY K + D++ + MR K PW
Sbjct: 304 IMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMR----KLQFPWTTSTY 359
Query: 373 --LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
+I ++ + ME + D + + C++ Y K + +
Sbjct: 360 NNVIEAFSDVGDAKNMEYTF-DQMRAEGMKADTKTFCCLIRGYANAGLFHKAEDLI---- 414
Query: 431 SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRR 490
EME V M++ T+ IM AY G
Sbjct: 415 -------------------------EMERVFNRMKDKHCQPDSTTYSIMVEAYKKEGMND 449
Query: 491 KV 492
K+
Sbjct: 450 KI 451
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/307 (20%), Positives = 117/307 (38%), Gaps = 38/307 (12%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
GTY LL +G + LF D E P+ Y L++ + R L+D +
Sbjct: 145 GTYMKLLVLLGKSGQPLRAHELF-DTMVEEGCEPTTELYTALLASYCRSNLIDEAFSILN 203
Query: 251 EIKD-SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
++K P+VFTY+ L+ + A + VE +Y+ M + P+T T ++L GY +
Sbjct: 204 QMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPNTVTQNIVLSGYGKA 263
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G MEK+ L + SK V W
Sbjct: 264 GKFDEMEKV--------------LSGMLESTSSKPDV---------------------WT 288
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
++ ++ + +E MEK + F + R ++ +Y + DK+++ ++
Sbjct: 289 MNTILSLFGNKGQIEIMEKWY-EKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYM 347
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
+ S Y++ + ++ + ME +M + KTF + YA G
Sbjct: 348 RKLQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGLF 407
Query: 490 RKVNQVL 496
K ++
Sbjct: 408 HKAEDLI 414
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 10/136 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N L+GAY + DK S+ ++K + TYN +I F + +ME F +
Sbjct: 323 TFNILIGAYGKKRMYDKMSSVMEYMRK-LQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQ 381
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM------MKAGPVMPDTNTYLLLLRG 305
++ + + T+ LI GY A ++ K E++ +M MK PD+ TY +++
Sbjct: 382 MRAEGMKADTKTFCCLIRGYANAGLFHKAEDLIEMERVFNRMKDKHCQPDSTTYSIMVEA 441
Query: 306 YAHSGNLPRMEKIYEL 321
Y G +KIY+L
Sbjct: 442 YKKEG---MNDKIYDL 454
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 41/225 (18%), Positives = 99/225 (44%), Gaps = 6/225 (2%)
Query: 277 WGKVEEIYQMMKAGPV-MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
W + E+++M++ P P TY+ LL SG R ++++ + L
Sbjct: 124 WLQALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYT 183
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE 395
A++ +Y + ++ D I M+ +P + + L++ E +E S+ + +
Sbjct: 184 ALLASYCRSNLIDEAFSILNQMKTLPRCQPDVFTYSTLLKACVDASRFELVE-SLYEEMD 242
Query: 396 HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA-ESAGWRLCRSLYHSKMVMYASQRRV 454
++ ++S Y + D++ + ES + ++ + ++ ++ ++
Sbjct: 243 VRSITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQI 302
Query: 455 EEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
E ME ++ N+ I+ +TF I+ AY G++R +++ +M
Sbjct: 303 EIMEKWYEKFRNFGIEPETRTFNILIGAY---GKKRMYDKMSSVM 344
>gi|297827231|ref|XP_002881498.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327337|gb|EFH57757.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 756
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 2/155 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN +L + + + F D+K ISP VTYNT+I+ + R +D E F E
Sbjct: 256 TYNLMLWGFFLSLRLETALRFFDDMKTRG-ISPDAVTYNTIINGYCRFKKMDEAEKLFVE 314
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K +N P+V TY +I GY++ I++ M++ + P+ TY LL G G
Sbjct: 315 MKGNNSEPSVVTYTTMIKGYLSVDRVDDGLRIFEEMRSFGIEPNATTYSTLLPGLCDVGK 374
Query: 312 LPRMEKIYE-LVKHHVDGKEFPLIRAMICAYSKCS 345
+ + I + ++ H+ K+ + ++ + SK
Sbjct: 375 MVEAKNILKNMMAKHIAPKDNSIFLKLLVSQSKAG 409
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 10/226 (4%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
AL+ W R ++ + K IK G + ++ A + + K + +
Sbjct: 132 ALQFFRWTERSGL--IRHDRDTHMKMIKMLGEVQKLNHARCILLDMPEKGVPWDEDMFVV 189
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLLLVDHMEAAFQEI 252
L+ +Y G+ + +F+ +K + + +I +YNTL V GR ++ F ++
Sbjct: 190 LIESYGKAGIVQESVKIFQKMK-DLGVERTIKSYNTLFKVILRRGRYMMAKRY---FNKM 245
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ P TYN ++ G+ + + MK + PD TY ++ GY +
Sbjct: 246 VSEGVEPTRHTYNLMLWGFFLSLRLETALRFFDDMKTRGISPDAVTYNTIINGYCRFKKM 305
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
EK++ +K + MI Y D +I MR
Sbjct: 306 DEAEKLFVEMKGNNSEPSVVTYTTMIKGYLSVDRVDDGLRIFEEMR 351
>gi|449466949|ref|XP_004151188.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Cucumis sativus]
Length = 608
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 95/195 (48%), Gaps = 8/195 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY + + AY GL K + +F +++ E +V Y++LIS++G+ + +
Sbjct: 402 TYASAINAYCRVGLYSKAEDIFGEME-EKGFDKCVVAYSSLISMYGKTGRLKDAMRLLAK 460
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K+ PNV+ YN L+ + A +VE++++ MK + PD +Y ++ Y +
Sbjct: 461 MKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISAYVKASE 520
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL----IPEKEYRP 367
+ E+ Y + + + M+ +SK S D + K+ M+L + E+ YR
Sbjct: 521 FEKCEQYYREFRMNGGTIDKAFGGIMVGVFSKTSRVDELVKLLRDMKLEGTRLDERLYRT 580
Query: 368 WLNVLL---IRVYAK 379
LN L+ ++V AK
Sbjct: 581 ALNALMDAGLQVQAK 595
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/312 (20%), Positives = 131/312 (41%), Gaps = 16/312 (5%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT--YNTLISVFGRLLLVDHMEAA 248
G Y ++ AY+ G S++ LF +++ ++S T Y L + V
Sbjct: 223 GCYCRVMEAYLKLGDSERVMELFNEVESRISVSTPFSTKIYGILCESLAKSGRVFESLEF 282
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F++++ ++ + Y+ LI + + E++Y KA ++ D +L L+ Y
Sbjct: 283 FRDMRKKGIAEDYTIYSALICTFASIQEVKLAEDLYNEAKAKKLLRDPAMFLKLILMYVQ 342
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAY-SKCSVTDRIKKIEALMRLIPEK---E 364
G+L + +I E++K G + A++ Y ++ +K E L+ E
Sbjct: 343 QGSLEKALEIVEVMKDFKIGVSDCIFCAIVNGYATRRGYEAAVKVYEKLIEDGCEPGQVT 402
Query: 365 YRPWLNVLL-IRVYAK-EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
Y +N + +Y+K ED EME+ D V ++S Y + +
Sbjct: 403 YASAINAYCRVGLYSKAEDIFGEMEEKGFD--------KCVVAYSSLISMYGKTGRLKDA 454
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482
+ + + G + +Y+ M M+ + ++++E + KEM+ KI K ++ + A
Sbjct: 455 MRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKRKKIAPDKVSYTSIISA 514
Query: 483 YATCGQRRKVNQ 494
Y + K Q
Sbjct: 515 YVKASEFEKCEQ 526
>gi|255660928|gb|ACU25633.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 481
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 98/215 (45%), Gaps = 5/215 (2%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G T + Y K R ++ F + N+ ++ T T+N L+ + +G +
Sbjct: 110 GVERTIKSYDALFKVISRRGRYMMSKRYFNKMVNEGIEPTRHTFNVLIWGFFLSGKVETA 169
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
F DLK I+P +VTYNT+I+ + R+ ++ E F E+K+ + P V TY LI
Sbjct: 170 NRFFEDLKSR-EITPDVVTYNTMINGYTRVKKMEEAEKYFLEMKEKKIDPTVVTYTTLIK 228
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDG 328
GY + + + MK + P+ TY LL G + + + E+V ++
Sbjct: 229 GYASIDRVDDALRLVEEMKGLGIKPNAITYSTLLPGLCDAEKMSEARSLLKEMVDKYIAP 288
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKI-EALMRL-IP 361
K+ + +I + K D + +A++RL IP
Sbjct: 289 KDNSIFIRLISSQCKAGNLDAAADVLKAMIRLSIP 323
>gi|449438238|ref|XP_004136896.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
mitochondrial-like [Cucumis sativus]
gi|449478839|ref|XP_004155431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
mitochondrial-like [Cucumis sativus]
Length = 406
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 143/300 (47%), Gaps = 15/300 (5%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT 192
R + ALE+L W + ++ ++ I ++ VD AA+ + E KT T
Sbjct: 103 RYKHALEILEWMVSHNQ--SELSDSDFAIRIDLMTKVFGVD-AAERYFEGLPIDAKTCET 159
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y ALL ++ + L+DK ++L+ +K E++I + + +N +++++ + V+ + + ++
Sbjct: 160 YTALLHSFAGSKLTDKAETLYEKMK-ESDIPLTALPFNEMMTLYTSIGQVEKVSSIVDDL 218
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT-YLLLLRGYAHSGN 311
K + P++FTYN I+ A V++I M P + Y+ L+ Y S N
Sbjct: 219 KQRMVHPDIFTYNLWISSLAAALNIDGVKQILNEMNHNPNSNENWVRYIELVNIYVKSAN 278
Query: 312 LPRME--KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK-EYRPW 368
L E + E V + +E+ +I Y+ D+I +I +R+ +K R +
Sbjct: 279 LLHSESNSVVESVS-GISQREWITYDLLIILYAGLGNKDKIDQIWRSLRMTKQKMTSRNY 337
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC--IVSSYFRCNAVDKLANFV 426
+ ++ Y D L+E+ + I D ++ T+ T I C +V+++ +K +FV
Sbjct: 338 --ICIVSCYLMLDDLKEIGEVI-DQWKQSTT-TDFDISSCNRLVNAFIEAGLHEKANSFV 393
>gi|302765661|ref|XP_002966251.1| hypothetical protein SELMODRAFT_85839 [Selaginella moellendorffii]
gi|300165671|gb|EFJ32278.1| hypothetical protein SELMODRAFT_85839 [Selaginella moellendorffii]
Length = 358
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 181 EAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
EA +G ++AL+ +Y +G + QS + + + I P++VTY LI +G+
Sbjct: 19 EAMQVRPSVVG-FSALVQSYAESGEVEGAQSAMKRML-DTGIQPNVVTYGGLIRAYGKRG 76
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
L D M +K P+ F Y +I Y + + G++++ ++ M+A +PD++
Sbjct: 77 LFDEMAKVVNTMKTVRCEPDFFVYKNVIEAYASGGLVGRMDKAFKAMRADGWIPDSDILN 136
Query: 301 LLLRGYAHSGNLPRME 316
LL +GYA G + ME
Sbjct: 137 LLAQGYASMGMIKEME 152
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G Q +F D + + PS+V ++ L+ + V+ ++A + + D+ + PNV T
Sbjct: 6 GQPHAAQGVF-DGMEAMQVRPSVVGFSALVQSYAESGEVEGAQSAMKRMLDTGIQPNVVT 64
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
Y LI Y ++ ++ ++ MK PD Y ++ YA G + RM+K ++ ++
Sbjct: 65 YGGLIRAYGKRGLFDEMAKVVNTMKTVRCEPDFFVYKNVIEAYASGGLVGRMDKAFKAMR 124
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 10/186 (5%)
Query: 246 EAAFQEIKDSNLSPNVFTYNYLIAGYM-TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304
+ F ++ + P+V ++ L+ Y + + G + +M+ G + P+ TY L+R
Sbjct: 12 QGVFDGMEAMQVRPSVVGFSALVQSYAESGEVEGAQSAMKRMLDTG-IQPNVVTYGGLIR 70
Query: 305 GYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL---IP 361
Y G M K+ +K +F + + +I AY+ + R+ K MR IP
Sbjct: 71 AYGKRGLFDEMAKVVNTMKTVRCEPDFFVYKNVIEAYASGGLVGRMDKAFKAMRADGWIP 130
Query: 362 EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
+ + LN LL + YA ++EME + + K + C + +Y R N +
Sbjct: 131 DSDI---LN-LLAQGYASMGMIKEMEGAQGELRRIKGWPREESVRACAL-AYIRHNQFYQ 185
Query: 422 LANFVK 427
+ FVK
Sbjct: 186 MEGFVK 191
>gi|302801133|ref|XP_002982323.1| hypothetical protein SELMODRAFT_116308 [Selaginella moellendorffii]
gi|300149915|gb|EFJ16568.1| hypothetical protein SELMODRAFT_116308 [Selaginella moellendorffii]
Length = 358
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Query: 181 EAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
EA +G ++AL +Y +G + QS R + + I P++VTY LI +G+
Sbjct: 19 EAMQVRPSVVG-FSALAQSYAESGDVEGAQSAMRRML-DTGIQPNVVTYGGLIRAYGKRG 76
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
L D M +K P+ F Y +I Y + + G++++ ++ M+A +PD++
Sbjct: 77 LFDDMAKVVNTMKTVRCEPDFFVYKNVIEAYASGGLVGRMDKAFKAMRADGWIPDSDILN 136
Query: 301 LLLRGYAHSGNLPRME 316
LL +GYA G + ME
Sbjct: 137 LLAQGYASMGMIKEME 152
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G Q +F D + + PS+V ++ L + V+ ++A + + D+ + PNV T
Sbjct: 6 GQPHAAQGVF-DGMEAMQVRPSVVGFSALAQSYAESGDVEGAQSAMRRMLDTGIQPNVVT 64
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
Y LI Y ++ + ++ MK PD Y ++ YA G + RM+K ++ ++
Sbjct: 65 YGGLIRAYGKRGLFDDMAKVVNTMKTVRCEPDFFVYKNVIEAYASGGLVGRMDKAFKAMR 124
>gi|387219093|gb|AFJ69255.1| hypothetical protein NGATSA_2006000, partial [Nannochloropsis
gaditana CCMP526]
Length = 479
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 129/316 (40%), Gaps = 29/316 (9%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+LL AY G Q + + + +A +SP T+NTLI+ F V E
Sbjct: 32 TYNSLLTAYTNAGDMAGAQQVLKRMV-QAGLSPDTYTFNTLIAAFVARREVRAAEKMVAY 90
Query: 252 IKDSNLSPNVFTYNYLIAGYMT-AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+++ + +V TY+ L+ GY T GK EE+ + M V P++ TY L+ GY +G
Sbjct: 91 MQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLIEGYVKAG 150
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-------CSVTDRIKK--IEALMRLIP 361
+ E + E ++ ++ AY++ + DR+KK ++A +++
Sbjct: 151 EMDWAEDVLERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQANVQVF- 209
Query: 362 EKEYRPWLNVLLIRVYAKEDCLEEMEKSI--------NDAFEHKTSVTTVRIMRCIVSSY 413
L+ YAK +E E + + K V +++ Y
Sbjct: 210 ---------TTLMNAYAKRGDVEGAEGVLARMLAVAEEEGGGSKDCEPNVHTYSTLMNVY 260
Query: 414 FRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSK 473
R + R +AGW + + M Y+ E E VLK ME + +
Sbjct: 261 ARAGLAAGAEGVLTRMTAAGWAPNVITFTTLMTAYSRAGDPEGAELVLKRMEAAGVSPNV 320
Query: 474 KTFWIMYYAYATCGQR 489
T+ + A + G R
Sbjct: 321 LTYNTLLSATSRMGLR 336
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 119/298 (39%), Gaps = 20/298 (6%)
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
N+ P+ +TYN+L++ + + + + + + LSP+ +T+N LIA ++
Sbjct: 24 GNLKPNAITYNSLLTAYTNAGDMAGAQQVLKRMVQAGLSPDTYTFNTLIAAFVARREVRA 83
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYA-HSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338
E++ M+ V+ D TY LL+GYA G++ + E++ E + +I
Sbjct: 84 AEKMVAYMQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLI 143
Query: 339 CAYSKCSVTDRIKKIEALMR---LIPEKEYRPWLN-VLLIRVYAKEDCLEEMEKSINDAF 394
Y K D + + MR L P +N +L+ Y + EK I D
Sbjct: 144 EGYVKAGEMDWAEDVLERMRTVGLAPTS-----MNYCVLMDAYTRRRDARGAEK-ILDRM 197
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR------AESAGWRLCRS---LYHSKM 445
+ + V++ ++++Y + V+ + R E G + C Y + M
Sbjct: 198 KKEGVQANVQVFTTLMNAYAKRGDVEGAEGVLARMLAVAEEEGGGSKDCEPNVHTYSTLM 257
Query: 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+YA E VL M + TF + AY+ G VL M G
Sbjct: 258 NVYARAGLAAGAEGVLTRMTAAGWAPNVITFTTLMTAYSRAGDPEGAELVLKRMEAAG 315
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 21/130 (16%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ Y GL+ + + + A +P+++T+ TL++ + R + E +
Sbjct: 252 TYSTLMNVYARAGLAAGAEGVLTRMTA-AGWAPNVITFTTLMTAYSRAGDPEGAELVLKR 310
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMW---GKVEE--------IYQMM-----KAGPV--M 293
++ + +SPNV TYN L++ T+ M G+VEE +Y M K G +
Sbjct: 311 MEAAGVSPNVLTYNTLLSA--TSRMGLREGEVEERRAKRVLQVYDTMRRSAGKGGGLEKA 368
Query: 294 PDTNTYLLLL 303
PD TY +LL
Sbjct: 369 PDEATYTVLL 378
>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 575
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 97/201 (48%), Gaps = 12/201 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ + G K SL RDLK +SPS+VTYN L+S F R +E
Sbjct: 340 TYNTLIDGFCSVGKLGKALSLCRDLKSRG-LSPSLVTYNVLVSGFCRKGDTSGAAKMVKE 398
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ + P+ TY LI + + ++ M+ ++PD +TY +L+ G+ G
Sbjct: 399 MEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQ 458
Query: 312 LPRMEKIYE-LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+ ++++ +V+ ++ E + MI Y K + R + L R + EKE P N
Sbjct: 459 MNEASRLFKSMVEKMLEPNEV-IYNTMILGYCKEGSSYRALR---LFRDMEEKELAP--N 512
Query: 371 V----LLIRVYAKEDCLEEME 387
V LIRV KE L+E E
Sbjct: 513 VASYSYLIRVLCKERKLKEAE 533
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 1/127 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ +G + +F +++ E +S +IVTYNTLI R + + +
Sbjct: 270 TYNCVMNQLCKDGRTKDAFKVFDEMR-ERGVSCNIVTYNTLIGGLCREMKANEANKVMDQ 328
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K ++PN+ TYN LI G+ + GK + + +K+ + P TY +L+ G+ G+
Sbjct: 329 MKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGD 388
Query: 312 LPRMEKI 318
K+
Sbjct: 389 TSGAAKM 395
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 2/157 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I + ++ A DLF E L TY L+ NG+ + ++ ++
Sbjct: 201 YTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQ 260
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E + P++ TYN +++ + F E+++ +S N+ TYN LI G
Sbjct: 261 -EHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKA 319
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ ++ MK+ + P+ TY L+ G+ G L +
Sbjct: 320 NEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGK 356
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 1/143 (0%)
Query: 178 LFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
F E+ K + + ++ ++ G +K L +L+ E SP++V Y TLI
Sbjct: 151 FFNESKIKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELR-EFGFSPNVVIYTTLIDGCC 209
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN 297
+ ++ + F E+ L N +TY LI G + + E+Y+ M+ V P+
Sbjct: 210 KKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLY 269
Query: 298 TYLLLLRGYAHSGNLPRMEKIYE 320
TY ++ G K+++
Sbjct: 270 TYNCVMNQLCKDGRTKDAFKVFD 292
>gi|255660924|gb|ACU25631.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 484
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP ++TYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVITYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G N
Sbjct: 211 MKGKNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLC---N 267
Query: 312 LPRMEKIYELVKHHVD 327
+M + ++K VD
Sbjct: 268 AEKMSEARSILKEMVD 283
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+TI +Y+AL M G + F + I P+ T+N +I F V+
Sbjct: 113 RTIKSYDALFKVIMRRGRFMMAKRYFNKMLSXG-IEPTRHTFNVMIWGFFLSGKVETANR 171
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
F+++K +SP+V TYN +I GY + E+ + MK + P TY L++GY
Sbjct: 172 FFEDMKSREISPDVITYNTMINGYYRVKKMEEAEKYFVEMKGKNIEPTVVTYTTLIKGY 230
>gi|227202654|dbj|BAH56800.1| AT2G41720 [Arabidopsis thaliana]
Length = 815
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/340 (21%), Positives = 146/340 (42%), Gaps = 18/340 (5%)
Query: 175 AADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
A DLF K + + T+ +++ Y G + C+++F + E + P+IV+YN
Sbjct: 302 ALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEG-LKPNIVSYNA 360
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L+ + + + +IK + + P+V +Y L+ Y + GK +E++ MM+
Sbjct: 361 LMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKER 420
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351
P+ TY L+ Y +G L +I+ ++ DG + P + ++ + CS + +
Sbjct: 421 RKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQ--DGIK-PNVVSVCTLLAACSRSKKKV 477
Query: 352 KIEALMRLIPEKEYRPWLNVLL----IRVYAKEDCLEEMEKSIN--DAFEHKTSVTTVRI 405
++ ++ + LN I Y E+EK+I + K
Sbjct: 478 NVDTVLSAAQSRGIN--LNTAAYNSAIGSYINA---AELEKAIALYQSMRKKKVKADSVT 532
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
++S R + + +++K E L + +Y S + Y+ Q +V E ES+ +M+
Sbjct: 533 FTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMK 592
Query: 466 NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
+ + M +AY + K ++L M NG +
Sbjct: 593 MAGCEPDVIAYTSMLHAYNASEKWGKACELLLEMEANGIE 632
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 76/166 (45%), Gaps = 11/166 (6%)
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
Y++++ + + V E+ F ++K + P+V Y ++ Y + WGK E+ M
Sbjct: 567 VYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELLLEM 626
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA-YSKCSV 346
+A + PD+ L+R + G + + +L++ KE P A+ +S C+
Sbjct: 627 EANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMRE----KEIPFTGAVFFEIFSACNT 682
Query: 347 TDRIKKIEALMRLIPEKEYRPWLNVLL----IRVYAKEDCLEEMEK 388
K+ L++++ Y P L++ L + ++ K +E M K
Sbjct: 683 LQEWKRAIDLIQMM--DPYLPSLSIGLTNQMLHLFGKSGKVEAMMK 726
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 110/303 (36%), Gaps = 41/303 (13%)
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G + C ++F+ +K + N YN +I + R VD F E++ + P+ T
Sbjct: 121 GCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAET 180
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
Y+ LI + A W + M + P +TY L+ SGN + E+ K
Sbjct: 181 YDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNW---REALEVCK 237
Query: 324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL 383
D P + S + K + L+ + RP I +Y CL
Sbjct: 238 KMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIY----CL 293
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS---L 440
++ +S ++ MR KRAE CR
Sbjct: 294 SKLGQS-------SQALDLFNSMR------------------EKRAE------CRPDVVT 322
Query: 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
+ S M +Y+ + +E +V + M + + ++ + AYA G VLG +
Sbjct: 323 FTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIK 382
Query: 501 KNG 503
+NG
Sbjct: 383 QNG 385
>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
Length = 844
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 127/296 (42%), Gaps = 10/296 (3%)
Query: 131 GSRPRLALEVLNWRRRQA-GYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT 189
G P LA+E+ R A +P T Y I R++ DL + L
Sbjct: 150 GDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGP 209
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+L+ ++ +G DK LF ++ E + P I+ N++I ++ +D E+
Sbjct: 210 DDFSYSLIYGFVKDGEVDKAHCLFLEMM-EQGVLPKILICNSIIKELCKMKEMDKAESIV 268
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
Q++ DS ++P++FTY+ +I G + K E + + M P++ TY L+ GY+ S
Sbjct: 269 QKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSIS 328
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKI-EALMRLIPEKEY 365
G +++ K P + + I A K T+ K I ++++ P+ +
Sbjct: 329 GMWNESVRVF---KQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDI 385
Query: 366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
+ +L A + CL ++ N K + ++++Y RC +DK
Sbjct: 386 ISYSTMLHGYATATDSCLADVHNIFNLMLT-KGIAPNKHVFNILINAYARCGMMDK 440
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 58/332 (17%), Positives = 129/332 (38%), Gaps = 14/332 (4%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL---LLVD 243
+ T+ N+ + A +G +++ + +F + + P I++Y+T++ + L D
Sbjct: 347 IPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGP-KPDIISYSTMLHGYATATDSCLAD 405
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
+ F + ++PN +N LI Y M K I++ M+ ++PDT T+ ++
Sbjct: 406 -VHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 464
Query: 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
G R++ H VD P C C + K + L+ + K
Sbjct: 465 SSLCRIG---RLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNK 521
Query: 364 EYRP----WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
+ P + + +I KE + E K I D V ++ Y +
Sbjct: 522 DIPPPGVKYFSS-IINNLCKEGRVAE-GKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNM 579
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
++ + S G +Y + + Y R+++ +V ++M + + + + I+
Sbjct: 580 EEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSII 639
Query: 480 YYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
+ + ++ M ++G V ++ +
Sbjct: 640 LHGLFQARRTTAAKKMFHEMIESGTTVSIHTY 671
>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
Length = 814
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 129/337 (38%), Gaps = 64/337 (18%)
Query: 45 SFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRD--------EL---- 92
SFT +C +H +F + +R + E L + LT +S L EL
Sbjct: 426 SFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQF 485
Query: 93 ------------------LANVDDLDKVFRVLDE-----------------KGSCLFRRH 117
L LD+ FR+ E G C ++
Sbjct: 486 LNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKL 545
Query: 118 SNGYAFVELMKQLGSRPR------LALEVLNWRRRQAGYG-------TPMTKEEYTKGIK 164
+ F++ M + G +P L + N + + M + YT +
Sbjct: 546 DEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVM 605
Query: 165 FAG--RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
G + + + F E +K+++ YN L+ AY +G L D+K +
Sbjct: 606 IDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG- 664
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
ISP+ TY +LI + V+ + F+E++ L PNVF Y LI GY KVE
Sbjct: 665 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVE 724
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
+ + M + V P+ TY +++ GYA GN+ ++
Sbjct: 725 CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRL 761
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 84/187 (44%), Gaps = 5/187 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
+T I + V+ A LF++ + + T+N ++ G D+ +F++
Sbjct: 252 FTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDE-AFMFKEKM 310
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E + P+++TY+ L+ R + +E+ PNV YN LI ++ A
Sbjct: 311 VERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSL 370
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG---NLPRMEKIYELVKHHVDGKEFPLI 334
K EI +M + + ++TY L++GY +G N R+ K + +V+ F +
Sbjct: 371 NKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSV 430
Query: 335 RAMICAY 341
++C++
Sbjct: 431 ICLLCSH 437
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY +L+ ++ + LF +++ E + P++ Y LI +G+L + +E +E
Sbjct: 671 TYTSLIKGMSIISRVEEAKLLFEEMRMEG-LEPNVFHYTALIDGYGKLGQMVKVECLLRE 729
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ N+ PN TY +I GY + + M+ ++PD+ TY + GY G
Sbjct: 730 MHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGG 789
Query: 312 L 312
+
Sbjct: 790 V 790
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F D + + P TY+ LI + V+ + + K + + P+V+TY+ +I G
Sbjct: 550 MFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGC 609
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
A + +E + M + V P+T Y L+R Y SG L ++ E +KH
Sbjct: 610 CKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKH 662
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 174 LAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
LA D+F ANK + + T N LL + + KC F + K +SP + + T
Sbjct: 198 LALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK--GVSPDVYLFTTA 255
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY----QMMK 288
I+ F + V+ F +++++ ++PNV T+N +I G M G+ +E + +M++
Sbjct: 256 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGL---GMCGRYDEAFMFKEKMVE 312
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
G + P TY +L++G + R+ Y ++K K FP
Sbjct: 313 RG-MEPTLITYSILVKGLTRA---KRIGDAYFVLKEMTK-KGFP 351
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Query: 170 NNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
N VD A L E A L I TYN L+ G + + LF D+K + +P ++T
Sbjct: 420 NGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKF-CNPDVIT 478
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y+ LI F +L +D F ++ + P+V T++ L+ GY A + E + + M
Sbjct: 479 YSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMV 538
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
A PD TY L+ G+ G + ++
Sbjct: 539 ASDCSPDVYTYTSLVDGFCKVGRMVEARRV 568
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+G + D ++LF D+ K+A + P +VT++TL+ + LVD E +E
Sbjct: 478 TYSCLIGGFCKLERIDMARTLFDDMLKQA-VLPDVVTFSTLVEGYCNAGLVDDAERLLEE 536
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ S+ SP+V+TY L+ G+ + + + M P+ TY L+ + +G
Sbjct: 537 MVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAG 595
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ + + L +++K E+ ++P++VTY+T+I F R VD F++
Sbjct: 163 TYNVLINGFCKVHKVHRAYLLLKEMK-ESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQ 221
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ ++ PN+ TYN L++G + + E+ M+ + PD +Y L+ G +G
Sbjct: 222 MVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGK 281
Query: 312 LPRMEKIYE 320
+ K++E
Sbjct: 282 IDMALKVFE 290
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 4/176 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ ++ + D LFR + E P++VTYNTL+S R L+D E
Sbjct: 198 TYSTVIHGFCRQTKVDTAYKLFRQMV-ENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDE 256
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ L P+ F+Y+ L+AG ++++ G PD Y L+ G +G
Sbjct: 257 MRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGR 316
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
L K++E ++ + + A++ K DR+++ + ++ + ++ P
Sbjct: 317 LDEACKLFEKMRENSCEPDVVTFTALMDGLCK---GDRLQEAQQVLETMEDRNCTP 369
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 9/202 (4%)
Query: 123 FVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
F LM L G R + A +VL + +T G+ G++ + A ++F
Sbjct: 339 FTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRD---AQEVFK 395
Query: 181 EAANKHLK-TIGTYNALL-GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238
+ ++ + TYN+L+ G M NG+ D L ++ + P I+TYNTLI +
Sbjct: 396 RMIVRGIEPNVVTYNSLIHGFCMTNGV-DSALLLMEEMTATGCL-PDIITYNTLIDGLCK 453
Query: 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298
F ++K +P+V TY+ LI G+ ++ M V+PD T
Sbjct: 454 TGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVT 513
Query: 299 YLLLLRGYAHSGNLPRMEKIYE 320
+ L+ GY ++G + E++ E
Sbjct: 514 FSTLVEGYCNAGLVDDAERLLE 535
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 2/154 (1%)
Query: 168 RINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
++ +D+A LF + + L + T++ L+ Y GL D + L ++ ++ SP +
Sbjct: 488 KLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVA-SDCSPDV 546
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TY +L+ F ++ + + + PNV TY LI + A + +
Sbjct: 547 YTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEE 606
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
M V P+ TY L+ G+ +G+L KI E
Sbjct: 607 MVGNGVQPNVITYRSLIGGFCGTGDLEEARKILE 640
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 79/197 (40%), Gaps = 35/197 (17%)
Query: 159 YTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I R VD A LF + N + + TYN LL NGL D+ L +++
Sbjct: 199 YSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMR 258
Query: 218 K----------------------------------EANISPSIVTYNTLISVFGRLLLVD 243
+ + P +V Y+TLI+ + +D
Sbjct: 259 ERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLD 318
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
F+++++++ P+V T+ L+ G + +++ + M+ P+ TY L+
Sbjct: 319 EACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLI 378
Query: 304 RGYAHSGNLPRMEKIYE 320
G +G + +++++
Sbjct: 379 DGLCKTGQVRDAQEVFK 395
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 2/130 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY AL+ A+ G L ++ + P+++TY +LI F ++ +
Sbjct: 583 TYTALIDAFCRAGKPTVAYRLLEEMVGNG-VQPNVITYRSLIGGFCGTGDLEEARKILER 641
Query: 252 I-KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ +D N ++F Y ++ G E+ + +K P + Y+ L+RG
Sbjct: 642 LERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGK 701
Query: 311 NLPRMEKIYE 320
L + ++ E
Sbjct: 702 ELGKAMEVLE 711
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 77/187 (41%), Gaps = 10/187 (5%)
Query: 149 GYGTPMTKEEYTKGIKFAG--RINNVDLAADLFAEA-ANKHLKTIGTYNALLGAYMYNGL 205
G+ +T +T + G + ++D A +L E + + YN ++ A
Sbjct: 50 GWPPGITPNVFTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARN 109
Query: 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
+ K FR ++ E N+ +T+ +I + + F ++K PN +TYN
Sbjct: 110 TAKALDYFRSMECEKNV----ITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYN 165
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
LI G+ + + + MK + P+ TY ++ G+ +++ Y+L +
Sbjct: 166 VLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQ---TKVDTAYKLFRQM 222
Query: 326 VDGKEFP 332
V+ P
Sbjct: 223 VENGCMP 229
>gi|255550708|ref|XP_002516403.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544501|gb|EEF46020.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 502
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/258 (24%), Positives = 118/258 (45%), Gaps = 15/258 (5%)
Query: 106 LDEKGSCLFRRHSNG--------YAFVELMKQLGSRPRLALEVLN-WRRRQAGYGTPMTK 156
L++KGSC + + +A + ++ SR L+V + W+ + + + +
Sbjct: 78 LNKKGSCPLQMLQDDADWSKDHFWAVIRFLRH-SSRSDEILQVFDMWKDIEK---SRINE 133
Query: 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRD 215
Y K I+ G ++ A F E L ++ YN+L+ Y NG D
Sbjct: 134 FNYEKVIEILGEEGLIEDAYSAFIEMKTLCLSPSLQVYNSLIHGYARNGKFDDAVFYLNH 193
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
LK E N+SP TYN LI +G+ + D M ++++ SP+ TYN LI A
Sbjct: 194 LK-EINLSPVSDTYNGLIQAYGKYKMYDEMGMCLKKMEMEGCSPDHVTYNLLIQELAEAG 252
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
+ ++E++YQ + + + T +L YA+ G + +ME I + ++ + LI+
Sbjct: 253 LLTRMEKVYQTTRMNRMDLKSTTLTAMLEAYANFGIVEKMELILKRTRNSKALLKEDLIK 312
Query: 336 AMICAYSKCSVTDRIKKI 353
+ Y + + R++K+
Sbjct: 313 KIALVYIENFMFSRLEKL 330
>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
Length = 864
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 127/296 (42%), Gaps = 10/296 (3%)
Query: 131 GSRPRLALEVLNWRRRQA-GYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT 189
G P LA+E+ R A +P T Y I R++ DL + L
Sbjct: 130 GDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGP 189
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+L+ ++ +G DK LF ++ E + P I+ N++I ++ +D E+
Sbjct: 190 DDFSYSLIYGFVKDGEVDKAHCLFLEMM-EQGVLPKILICNSIIKELCKMKEMDKAESIV 248
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
Q++ DS ++P++FTY+ +I G + K E + + M P++ TY L+ GY+ S
Sbjct: 249 QKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSIS 308
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKI-EALMRLIPEKEY 365
G +++ K P + + I A K T+ K I ++++ P+ +
Sbjct: 309 GMWNESVRVF---KQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDI 365
Query: 366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
+ +L A + CL ++ N K + ++++Y RC +DK
Sbjct: 366 ISYSTMLHGYATATDSCLADVHNIFNLMLT-KGIAPNKHVFNILINAYARCGMMDK 420
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 58/332 (17%), Positives = 129/332 (38%), Gaps = 14/332 (4%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL---LLVD 243
+ T+ N+ + A +G +++ + +F + + P I++Y+T++ + L D
Sbjct: 327 IPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGP-KPDIISYSTMLHGYATATDSCLAD 385
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
+ F + ++PN +N LI Y M K I++ M+ ++PDT T+ ++
Sbjct: 386 -VHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 444
Query: 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
G R++ H VD P C C + K + L+ + K
Sbjct: 445 SSLCRIG---RLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNK 501
Query: 364 EYRP----WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
+ P + + +I KE + E K I D V ++ Y +
Sbjct: 502 DIPPPGVKYFSS-IINNLCKEGRVAE-GKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNM 559
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
++ + S G +Y + + Y R+++ +V ++M + + + + I+
Sbjct: 560 EEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSII 619
Query: 480 YYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
+ + ++ M ++G V ++ +
Sbjct: 620 LHGLFQARRTTAAKKMFHEMIESGTTVSIHTY 651
>gi|357116849|ref|XP_003560189.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Brachypodium distachyon]
Length = 737
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 4/172 (2%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN ++ AY ++ + LF ++K E + P+IVTYN L+ + R L + +E+ E+
Sbjct: 392 YNEIVNAYCKCSQIEEAEGLFVEMK-EKGLKPTIVTYNILMDAYSRRLQPEVVESLLLEM 450
Query: 253 KDSNLSPNVFTYNYLIAGY-MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
D L PN +YN LI+ Y M K E+ + MKA + P +++Y LL YA +G
Sbjct: 451 HDLGLQPNARSYNCLISAYGRQKKMSEKAEDAFLRMKADGIKPTSSSYTSLLCAYAVNGQ 510
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
+ Y +K A++ + + TD++ +E +I EK
Sbjct: 511 YEKAHITYVDMKKERLKPSLETYTALLDIFRRAGDTDKL--METWRSMINEK 560
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 10/174 (5%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A D F +K T +Y +LL AY NG +K + D+KKE + PS+ TY L+
Sbjct: 479 AEDAFLRMKADGIKPTSSSYTSLLCAYAVNGQYEKAHITYVDMKKE-RLKPSLETYTALL 537
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPV 292
+F R D + ++ + + + T++ ++ G ++ + + IY+ G +
Sbjct: 538 DIFRRAGDTDKLMETWRSMINEKVGGTRVTFHMVLDGLAKYGLYVQARDVIYEFGNIG-L 596
Query: 293 MPDTNTYLLLLRGYAHSGN---LPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
P T TY +L+ YA G LP++ K ++ D + MI AY++
Sbjct: 597 PPTTMTYNILMNTYAKGGQHYKLPQLLKEMSALELKPDSVTYS---TMIYAYAR 647
>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
Length = 852
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 128/300 (42%), Gaps = 7/300 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLK-KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
T N ++ + G + K +F +K K + P +VT+ T+I ++ +++ + AF
Sbjct: 304 TLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFN 363
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ L PN+ +YN LI Y + M + ++ +K PD +Y LL Y SG
Sbjct: 364 TMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSG 423
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAY-SKCSVTDRIKKIEALMRLIPEKEYRPWL 369
+ K++EL++ + A+I AY SK +T+ ++ + + R +P +
Sbjct: 424 KPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMER----NGVQPNI 479
Query: 370 NVLLIRVYAKEDCLEEME-KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+ + A C ++++ KS+ A E + + SY DK + +
Sbjct: 480 VSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRA 539
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+ + Y+ + + E L EM + KI SK+ + + AY+ GQ
Sbjct: 540 MRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQ 599
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 90/410 (21%), Positives = 163/410 (39%), Gaps = 41/410 (10%)
Query: 123 FVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEA 182
+ + Q+GS +++V W + Q Y + Y I+ R N VD A LF E
Sbjct: 132 LIREITQIGSLEH-SVQVFRWMKNQKNYCA--RNDIYNMMIRLHARHNIVDQARGLFFEM 188
Query: 183 ANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241
K TYNAL+ A+ G ++ D+ + A I PS TYN LI+ G
Sbjct: 189 QKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAA-IPPSRSTYNNLINACGSSGN 247
Query: 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301
+++ ++ + P++ T+N +++ Y + KV +++MK + PDT T +
Sbjct: 248 WKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNI 307
Query: 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC--------------SVT 347
+ IY LVK +GK + +M S+C SV
Sbjct: 308 V---------------IYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVC 352
Query: 348 DRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTV 403
+I+ + + + +P N++ LI YA +E N+ ++ V
Sbjct: 353 GQIENCQTAFNTMLAEGLKP--NIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVV 410
Query: 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463
++++Y + +K + + Y++ + Y S+ + E +L E
Sbjct: 411 SYTS-LLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHE 469
Query: 464 MENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
ME + + + + A CGQ+ K+ VL G + A+ S
Sbjct: 470 MERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNS 519
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 85/204 (41%), Gaps = 41/204 (20%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV------FGRLL-LVDHM 245
YN+ +G+Y+ G DK SL+R ++ + + P VTYN LIS +G L +D M
Sbjct: 517 YNSAIGSYLSVGEYDKALSLYRAMRTK-KVKPDPVTYNVLISGCCKMSKYGEALGFLDEM 575
Query: 246 ----------------------------EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E+ F ++K P+V TY +I Y A W
Sbjct: 576 MDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENW 635
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
K ++ M+ V PD+ L+R + G ++ + E ++ K+ P +
Sbjct: 636 EKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMRE----KKIPFNNSS 691
Query: 338 ICA-YSKCSVTDRIKKIEALMRLI 360
S CS+ ++I L++L+
Sbjct: 692 FFEMVSACSLLREWREIIGLIKLM 715
>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
Length = 592
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 13/187 (6%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y+ ++ A+ +G+ D SL ++K+++ I P I TY+TLI +L +++ F E+
Sbjct: 216 YSIVIDAFCKDGMLDGATSLLNEMKQKS-IPPDIFTYSTLIDALCKLSQWENVRTLFLEM 274
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
N+ PNV T+N +I G EEI + M V PD TY +++ GY G +
Sbjct: 275 IHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQV 334
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM---RLIPEKEYRPWL 369
R +I++ + + +I Y+ R KKI+ M R I +K +P +
Sbjct: 335 DRAREIFDSMINKSIEPNIISYNILINGYA------RQKKIDEAMQVCREISQKGLKPSI 388
Query: 370 ---NVLL 373
NVLL
Sbjct: 389 VTCNVLL 395
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 11/189 (5%)
Query: 175 AADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A + F E + H+ + T+ LLG Y NGL ++ S F L++ +I Y +I
Sbjct: 407 AQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRRE-DTNIQIYTAVI 465
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ +D A F+++ L P+V TY +I+GY + + +++ + M+ +
Sbjct: 466 DGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGCL 525
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
D TY +++RG+ S + M+ E + GK F A + + D I +
Sbjct: 526 ADNRTYNVIVRGFLRSNKVSEMKAFLE----EIAGKSFSFEAATVEL-----LMDIIAED 576
Query: 354 EALMRLIPE 362
+L+ +IPE
Sbjct: 577 PSLLNMIPE 585
>gi|422294671|gb|EKU21971.1| hypothetical protein NGA_2006000, partial [Nannochloropsis gaditana
CCMP526]
Length = 472
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 129/316 (40%), Gaps = 29/316 (9%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+LL AY G Q + + + +A +SP T+NTLI+ F V E
Sbjct: 25 TYNSLLTAYTNAGDMAGAQQVLKRMV-QAGLSPDTYTFNTLIAAFVARREVRAAEKMVAY 83
Query: 252 IKDSNLSPNVFTYNYLIAGYMT-AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+++ + +V TY+ L+ GY T GK EE+ + M V P++ TY L+ GY +G
Sbjct: 84 MQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLIEGYVKAG 143
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-------CSVTDRIKK--IEALMRLIP 361
+ E + E ++ ++ AY++ + DR+KK ++A +++
Sbjct: 144 EMDWAEDVLERMRTVGLAPTSMNYCVLMDAYTRRRDARGAEKILDRMKKEGVQANVQVF- 202
Query: 362 EKEYRPWLNVLLIRVYAKEDCLEEMEKSI--------NDAFEHKTSVTTVRIMRCIVSSY 413
L+ YAK +E E + + K V +++ Y
Sbjct: 203 ---------TTLMNAYAKRGDVEGAEGVLARMLAVAEEEGGGSKDCEPNVHTYSTLMNVY 253
Query: 414 FRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSK 473
R + R +AGW + + M Y+ E E VLK ME + +
Sbjct: 254 ARAGLAAGAEGVLTRMTAAGWAPNVITFTTLMTAYSRAGDPEGAELVLKRMEAAGVSPNV 313
Query: 474 KTFWIMYYAYATCGQR 489
T+ + A + G R
Sbjct: 314 LTYNTLLSATSRMGLR 329
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 119/298 (39%), Gaps = 20/298 (6%)
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
N+ P+ +TYN+L++ + + + + + + LSP+ +T+N LIA ++
Sbjct: 17 GNLKPNAITYNSLLTAYTNAGDMAGAQQVLKRMVQAGLSPDTYTFNTLIAAFVARREVRA 76
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYA-HSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338
E++ M+ V+ D TY LL+GYA G++ + E++ E + +I
Sbjct: 77 AEKMVAYMQEHGVLADVVTYSQLLQGYATKEGDMGKAEEVLERMARDGVAPNSYTYNYLI 136
Query: 339 CAYSKCSVTDRIKKIEALMR---LIPEKEYRPWLN-VLLIRVYAKEDCLEEMEKSINDAF 394
Y K D + + MR L P +N +L+ Y + EK I D
Sbjct: 137 EGYVKAGEMDWAEDVLERMRTVGLAPTS-----MNYCVLMDAYTRRRDARGAEK-ILDRM 190
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR------AESAGWRLCRS---LYHSKM 445
+ + V++ ++++Y + V+ + R E G + C Y + M
Sbjct: 191 KKEGVQANVQVFTTLMNAYAKRGDVEGAEGVLARMLAVAEEEGGGSKDCEPNVHTYSTLM 250
Query: 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+YA E VL M + TF + AY+ G VL M G
Sbjct: 251 NVYARAGLAAGAEGVLTRMTAAGWAPNVITFTTLMTAYSRAGDPEGAELVLKRMEAAG 308
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 21/130 (16%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ Y GL+ + + + A +P+++T+ TL++ + R + E +
Sbjct: 245 TYSTLMNVYARAGLAAGAEGVLTRMTA-AGWAPNVITFTTLMTAYSRAGDPEGAELVLKR 303
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMW---GKVEE--------IYQMM-----KAGPV--M 293
++ + +SPNV TYN L++ T+ M G+VEE +Y M K G +
Sbjct: 304 MEAAGVSPNVLTYNTLLSA--TSRMGLREGEVEERRAKRVLQVYDTMRRSAGKGGGLEKA 361
Query: 294 PDTNTYLLLL 303
PD TY +LL
Sbjct: 362 PDEATYTVLL 371
>gi|199601721|dbj|BAG70980.1| pentatricopeptide (PPR) repeat-containing protein [Musa balbisiana]
Length = 788
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 6/165 (3%)
Query: 123 FVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF-AE 181
F L++ G R+ E + RR G T Y K R V +A LF A
Sbjct: 216 FASLIEGYGC-ARIPQEAVKIFRRLPELGVTRTVRSYDAVFKAILRSGRVAMARRLFNAM 274
Query: 182 AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241
A L + TYN LL + + + Q F D+ KE I+P +VTYNT+++ + R
Sbjct: 275 IAEGVLPVLSTYNTLLWGFCLSIKMETAQRFFADM-KERGIAPDLVTYNTILNGWARAKK 333
Query: 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
+D E F E+ + +PN +YN +I GY+ + G+V++ +M
Sbjct: 334 MDDAEKVFAEMTAAGFAPNSISYNIMIKGYVCS---GRVDDGLRM 375
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+T+ +Y+A+ A + +G + LF + E + P + TYNTL+ F + ++ +
Sbjct: 246 RTVRSYDAVFKAILRSGRVAMARRLFNAMIAEG-VLPVLSTYNTLLWGFCLSIKMETAQR 304
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
F ++K+ ++P++ TYN ++ G+ A E+++ M A P++ +Y ++++GY
Sbjct: 305 FFADMKERGIAPDLVTYNTILNGWARAKKMDDAEKVFAEMTAAGFAPNSISYNIMIKGYV 364
Query: 308 HSGNL 312
SG +
Sbjct: 365 CSGRV 369
Score = 38.9 bits (89), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 1/127 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+ +L+ Y + + +FR L E ++ ++ +Y+ + R V F +
Sbjct: 216 FASLIEGYGCARIPQEAVKIFRRLP-ELGVTRTVRSYDAVFKAILRSGRVAMARRLFNAM 274
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ P + TYN L+ G+ + + + MK + PD TY +L G+A + +
Sbjct: 275 IAEGVLPVLSTYNTLLWGFCLSIKMETAQRFFADMKERGIAPDLVTYNTILNGWARAKKM 334
Query: 313 PRMEKIY 319
EK++
Sbjct: 335 DDAEKVF 341
>gi|359496212|ref|XP_003635178.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Vitis vinifera]
Length = 379
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 4/157 (2%)
Query: 167 GRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G D A LF E + +T+ ++NALL A + + DK F++L I P
Sbjct: 103 GTAGMFDHAHKLFDELPKLNCERTVMSFNALLSACVNSKKFDKIDGFFQELPGNLGIVPD 162
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+V+YN L++ F + +D + E++ L P++ T+N L+ + + E+I+
Sbjct: 163 VVSYNILVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWD 222
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
+MK V P+ +Y LRG RM + EL+
Sbjct: 223 LMKKNNVAPNVRSYNAKLRGVISEN---RMSEAVELI 256
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 75/145 (51%), Gaps = 5/145 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN L+ A+ G D S+ +++K + P ++T+NTL++ F + E +
Sbjct: 165 SYNILVNAFCEMGSLDSALSVLDEMEK-VGLEPDLITFNTLLNAFYQNGSYADGEKIWDL 223
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K +N++PNV +YN + G ++ + E+ MK + PD T L++G+ ++GN
Sbjct: 224 MKKNNVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGN 283
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRA 336
L ++ Y + + E P +RA
Sbjct: 284 LEEAKRWYSEIARN----ELPPVRA 304
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT-LISVFGRLLLVDHMEAAFQ 250
T+N LL A+ NG + ++ DL K+ N++P++ +YN L V + + +E
Sbjct: 200 TFNTLLNAFYQNGSYADGEKIW-DLMKKNNVAPNVRSYNAKLRGVISENRMSEAVEL-ID 257
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+K S + P+VFT N L+ G+ A + + Y + + P TY+ L+ G
Sbjct: 258 EMKTSGIKPDVFTLNSLMKGFCNAGNLEEAKRWYSEIARNELPPVRATYMTLIPFLVEKG 317
Query: 311 NL 312
+
Sbjct: 318 DF 319
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ Y G+ D LF +L K N +++++N L+S D ++ FQE+ +
Sbjct: 98 LMTLYGTAGMFDHAHKLFDELPK-LNCERTVMSFNALLSACVNSKKFDKIDGFFQELPGN 156
Query: 256 -NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ P+V +YN L+ + + M+ + PD T+ LL + +G+
Sbjct: 157 LGIVPDVVSYNILVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYAD 216
Query: 315 MEKIYELVKHH 325
EKI++L+K +
Sbjct: 217 GEKIWDLMKKN 227
>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
Length = 592
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN ++ A+ +G+ D SL ++K++ NI P I+TY +LI G+L + + F E+
Sbjct: 216 YNIVIDAFCKDGMLDGATSLLNEMKQK-NIPPDIITYTSLIDGLGKLSQWEKVRTLFLEM 274
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
N+ P+V T+N +I G EEI M V P+ TY +++ GY G +
Sbjct: 275 IHLNIYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQM 334
Query: 313 PRMEKIYE 320
R +I++
Sbjct: 335 GRARRIFD 342
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 11/196 (5%)
Query: 168 RINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+ + A F E A H+ + T+ LLG Y NGL ++ S F L++ +I
Sbjct: 400 EVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRRE-DTNI 458
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
Y +I+ + +D A F+++ L P+V TY +I+GY + + +++ +
Sbjct: 459 QIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRK 518
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346
M+ +PD TY +++RG+ S + M+ + + GK F A + +
Sbjct: 519 MEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLK----EIAGKSFSFEAATVEL-----L 569
Query: 347 TDRIKKIEALMRLIPE 362
D I + +L+ +IPE
Sbjct: 570 MDIIAEDPSLLNMIPE 585
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 77/191 (40%), Gaps = 6/191 (3%)
Query: 130 LGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT 189
L R L VL ++ G P + +T I+ N V A LF + +++
Sbjct: 119 LMHRTDLGFSVLAIHFKK---GIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENICE 175
Query: 190 IG--TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
Y ++ G + K L R L ++ P YN +I F + ++D +
Sbjct: 176 PDEVMYGTVMDGLCKKGHTQKAFDLLR-LMEQGITKPDTCIYNIVIDAFCKDGMLDGATS 234
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
E+K N+ P++ TY LI G W KV ++ M + PD T+ ++ G
Sbjct: 235 LLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLC 294
Query: 308 HSGNLPRMEKI 318
G + E+I
Sbjct: 295 KEGKVEDAEEI 305
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 124/305 (40%), Gaps = 22/305 (7%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
+D A L E K++ I TY +L+ +K ++LF ++ NI P + T+N
Sbjct: 229 LDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMI-HLNIYPDVCTFN 287
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
++I + V+ E + + + PN TYN ++ GY G+ I+ M
Sbjct: 288 SVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDK 347
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR- 349
+ PD +Y L+ GY +M+K +L + P I CSV R
Sbjct: 348 GIEPDIISYTALINGYVEK---KKMDKAMQLFREISQNGLKPSIVT-------CSVLLRG 397
Query: 350 ---IKKIEALMRLIPEKE---YRP--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT 401
+ + E E + + P + + L+ Y K +EE + E + T
Sbjct: 398 LFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFH-KLERRREDT 456
Query: 402 TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL 461
++I +++ + +DK ++ G Y + + Y + ++E + +L
Sbjct: 457 NIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDML 516
Query: 462 KEMEN 466
++ME+
Sbjct: 517 RKMED 521
>gi|255660930|gb|ACU25634.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 484
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 4/212 (1%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G T + Y K R ++ F + N+ ++ T T+N L+ + +G +
Sbjct: 110 GVERTIKSYDALFKVISRRGRYMMSKRYFNKMVNEGIEPTRHTFNVLIWGFFLSGKVETA 169
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
F D+K I+P ++TYNT+I+ + R+ ++ E F E+K+ + P V TY LI
Sbjct: 170 NRFFEDMKSR-EITPDVITYNTMINGYNRVKKMEEAEKYFLEMKERKIDPTVVTYTTLIK 228
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDG 328
GY + + + MK + P+ TY LL G ++ + I E+V +V
Sbjct: 229 GYASVDRVDDALRLVEEMKGLGIKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYVAP 288
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ + +I + K D + +A++RL
Sbjct: 289 TDNSIFMRLISSQCKAGNLDAAADVLKAMIRL 320
>gi|9755888|emb|CAC01941.1| RSP67.2 [Raphanus sativus]
Length = 700
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 88/375 (23%), Positives = 154/375 (41%), Gaps = 35/375 (9%)
Query: 42 PNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDAR--VRKDLTQTVSALRDELLANV--- 96
PN + D+ A +F + +T P+ V +L +T+ R+ +L NV
Sbjct: 122 PNEADVSDVIAKFGSKLFEQDAVVALNNMTNPETAPLVLNNLLETLKPTREVILYNVTMK 181
Query: 97 -----DDLDKVFRVLDEKGSCLFRR-----HSNGYAFVELMKQLGSRPRLALEVLNWRRR 146
DL+K ++ DE + +R ++ + +Q G P A+E W +
Sbjct: 182 VFRKSKDLEKSEKLFDE----MLQRGVKPDNATFTTLISCARQCG-LPNRAVE---WFEK 233
Query: 147 QAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGL 205
+G I GR NV++A L+ A + + T++ L+ Y Y G
Sbjct: 234 MPSFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGN 293
Query: 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
D C +++ ++K + P++V YN L+ G+ +++ + PN TY
Sbjct: 294 YDGCLNIYEEMKS-LGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYA 352
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
LI Y A IY+ MK + Y LL A G + +I++ +K
Sbjct: 353 ALIRAYGRARYGEDALVIYRQMKGKGMELTVLLYNTLLSMCADIGYVDEAFEIFQDMKS- 411
Query: 326 VDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKE 380
G P ++I YS C R+ + EA +R + E + P L VL LI+ Y K
Sbjct: 412 -SGTCEPDSWTFSSLITVYSCCG---RVSEAEAALREMREAGFEPTLFVLTSLIQCYGKA 467
Query: 381 DCLEEMEKSINDAFE 395
++++ ++ E
Sbjct: 468 KQVDDVVRTFEQVLE 482
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I+ GR + A ++ + K ++ T+ YN LL G D+ +F+D+K
Sbjct: 351 YAALIRAYGRARYGEDALVIYRQMKGKGMELTVLLYNTLLSMCADIGYVDEAFEIFQDMK 410
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P T+++LI+V+ V EAA +E++++ P +F LI Y A
Sbjct: 411 SSGTCEPDSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQV 470
Query: 278 GKVEEIYQMMKAGPVMPD 295
V ++ + + PD
Sbjct: 471 DDVVRTFEQVLELGIEPD 488
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 58/296 (19%), Positives = 117/296 (39%), Gaps = 33/296 (11%)
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
++ YN + VF + ++ E F E+ + P+ T+ LI+ + + E ++
Sbjct: 173 VILYNVTMKVFRKSKDLEKSEKLFDEMLQRGVKPDNATFTTLISCARQCGLPNRAVEWFE 232
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV---KHHVDGKEFP-LIRAMICA- 340
M + + PD T ++ Y +GN+ +Y+ K +D F LIR A
Sbjct: 233 KMPSFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAG 292
Query: 341 -YSKC-SVTDRIKKIEALMRLIP--------EKEYRPWLNVLLIRVYAKEDCLEEMEKSI 390
Y C ++ + +K + L+ K RPW ++ + I
Sbjct: 293 NYDGCLNIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHK------------DLI 340
Query: 391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450
++ FE S ++ +Y R + ++ + G L LY++ + M A
Sbjct: 341 SNGFEPNWSTYAA-----LIRAYGRARYGEDALVIYRQMKGKGMELTVLLYNTLLSMCAD 395
Query: 451 QRRVEEMESVLKEMENYKI-DCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
V+E + ++M++ + TF + Y+ CG+ + L M + G++
Sbjct: 396 IGYVDEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGRVSEAEAALREMREAGFE 451
>gi|255660920|gb|ACU25629.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
Length = 484
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N ++ + +G + F D+K ISP ++TYNT+I+ + R+ +D E F E+
Sbjct: 153 FNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVITYNTMINGYYRVKKMDEAEKYFVEM 211
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
K N+ P V TY LI GY++ + + MK + P+ TY LL G N
Sbjct: 212 KGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLC---NA 268
Query: 313 PRMEKIYELVKHHVD 327
+M + ++K VD
Sbjct: 269 EKMSEARSILKEMVD 283
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 6/153 (3%)
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G +G+ V+ A F + ++ + + TYN ++ Y D+ + F ++K
Sbjct: 159 GFFLSGK---VETANRFFEDMKSREISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGR- 214
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
NI P++VTY TLI + + VD +E+K + PN TY+ L+ G A +
Sbjct: 215 NIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLLPGLCNAEKMSEA 274
Query: 281 EEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNL 312
I + M + P D + + L+ +GNL
Sbjct: 275 RSILKEMVDKYMAPTDNSIFXRLISSQCKTGNL 307
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+TI +Y+AL + G + F + E I P+ +N +I F V+
Sbjct: 113 RTIKSYDALFKVILRRGRFMMAKRYFNKMLSEG-IEPTRHXFNVMIWGFFLSGKVETANR 171
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
F+++K +SP+V TYN +I GY + E+ + MK + P TY L++GY
Sbjct: 172 FFEDMKSREISPDVITYNTMINGYYRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGY 230
>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 129/337 (38%), Gaps = 64/337 (18%)
Query: 45 SFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRD--------EL---- 92
SFT +C +H +F + +R + E L + LT +S L EL
Sbjct: 437 SFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQF 496
Query: 93 ------------------LANVDDLDKVFRVLDE-----------------KGSCLFRRH 117
L LD+ FR+ E G C ++
Sbjct: 497 LNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKL 556
Query: 118 SNGYAFVELMKQLGSRPR------LALEVLNWRRRQAGYG-------TPMTKEEYTKGIK 164
+ F++ M + G +P L + N + + M + YT +
Sbjct: 557 DEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVM 616
Query: 165 FAG--RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
G + + + F E +K+++ YN L+ AY +G L D+K +
Sbjct: 617 IDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG- 675
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
ISP+ TY +LI + V+ + F+E++ L PNVF Y LI GY KVE
Sbjct: 676 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVE 735
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
+ + M + V P+ TY +++ GYA GN+ ++
Sbjct: 736 CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRL 772
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 84/187 (44%), Gaps = 5/187 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
+T I + V+ A LF++ + + T+N ++ G D+ +F++
Sbjct: 263 FTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDE-AFMFKEKM 321
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E + P+++TY+ L+ R + +E+ PNV YN LI ++ A
Sbjct: 322 VERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSL 381
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG---NLPRMEKIYELVKHHVDGKEFPLI 334
K EI +M + + ++TY L++GY +G N R+ K + +V+ F +
Sbjct: 382 NKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSV 441
Query: 335 RAMICAY 341
++C++
Sbjct: 442 ICLLCSH 448
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 2/155 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I+ R + +A +L + +K + TY +L+ ++ + LF +++
Sbjct: 648 YNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR 707
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E + P++ Y LI +G+L + +E +E+ N+ PN TY +I GY
Sbjct: 708 MEG-LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNV 766
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ + M+ ++PD+ TY + GY G +
Sbjct: 767 TEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGV 801
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F D + + P TY+ LI + V+ + + K + + P+V+TY+ +I G
Sbjct: 561 MFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGC 620
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
A + +E + M + V P+T Y L+R Y SG L ++ E +KH
Sbjct: 621 CKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKH 673
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 174 LAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
LA D+F ANK + + T N LL + + KC F + K +SP + + T
Sbjct: 209 LALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK--GVSPDVYLFTTA 266
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY----QMMK 288
I+ F + V+ F +++++ ++PNV T+N +I G M G+ +E + +M++
Sbjct: 267 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGL---GMCGRYDEAFMFKEKMVE 323
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
G + P TY +L++G + R+ Y ++K K FP
Sbjct: 324 RG-MEPTLITYSILVKGLTRA---KRIGDAYFVLKEMTK-KGFP 362
>gi|297741611|emb|CBI32743.3| unnamed protein product [Vitis vinifera]
Length = 772
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 93/181 (51%), Gaps = 10/181 (5%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
+ T TYN ++ + + + F ++K E ISP +VTYNT+I+ + R+ ++ E
Sbjct: 254 MPTCHTYNIMIWGFFLSLKVETANRFFEEMK-ERRISPDVVTYNTMINGYYRIKKMEEAE 312
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLL 303
F E+K N+ P V +Y +I GY++ G+V++ +++ MK+ + P+ TY LL
Sbjct: 313 KFFVEMKGRNIEPTVISYTTMIKGYVSV---GRVDDGLRLFEEMKSFGIKPNAVTYSTLL 369
Query: 304 RGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL-I 360
G + + + E+V+ ++ K+ + +I K D + +A++RL I
Sbjct: 370 PGLCDGEKMLEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAADVLKAMIRLSI 429
Query: 361 P 361
P
Sbjct: 430 P 430
>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
Length = 668
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 9/226 (3%)
Query: 145 RRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYN 203
R G + Y I G+ N + A D F + + ++ + T+N L+ A+
Sbjct: 393 REMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKG 452
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G D+ LF +++ E+N P TYN +I++ G + +EA E+K+ L PN+ T
Sbjct: 453 GRHDRAAELFEEMR-ESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIIT 511
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
Y L+ Y + + + + + MKA + P Y L+ YA G + + +K
Sbjct: 512 YTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMK 571
Query: 324 HHVDGKEFPL--IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
DG E + + ++I A+ + R+ + ++++ + E RP
Sbjct: 572 --ADGLEVSILVLNSLINAFGE---DRRVVEAFSVLQFMRENGLRP 612
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/378 (21%), Positives = 155/378 (41%), Gaps = 20/378 (5%)
Query: 134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE--AANKHLKTIG 191
P ALE+L QA TP + T I G V A LF E A +
Sbjct: 244 PDAALELLA--SAQAIGLTPRSNA-VTALISALGTAGRVAEAEALFLEFFLAGEIKPRTR 300
Query: 192 TYNALLGAYM-YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
YNALL Y+ L + Q L D + ++P TY+ L+ + R + +
Sbjct: 301 AYNALLKGYVRIASLKNAEQVL--DEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLK 358
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E++ + P+ + ++ ++AG+ W K + + M+A V PD + Y +++ +
Sbjct: 359 EMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYN 418
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
L + ++ + +I A+ K DR ++ MR E P
Sbjct: 419 CLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMR---ESNCPPGTT 475
Query: 371 V--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
++I + +++ E +E +++ E V + +V Y R + + ++
Sbjct: 476 TYNIMINLLGEQEHWEGVEAMLSEMKEQGL-VPNIITYTTLVDVYGRSGRYKEAIDCIEA 534
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
++ G + ++YH+ + YA + + +V+K M K D + + ++ G+
Sbjct: 535 MKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAM---KADGLEVSILVLNSLINAFGE 591
Query: 489 RRKVNQ---VLGLMCKNG 503
R+V + VL M +NG
Sbjct: 592 DRRVVEAFSVLQFMRENG 609
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 2/148 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLK 217
YT + GR A D LK T Y+AL+ AY GL+D ++ + +K
Sbjct: 512 YTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMK 571
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + SI+ N+LI+ FG V + Q ++++ L P+V TY L+ + +
Sbjct: 572 AD-GLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQF 630
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
KV IY+ M PD +L G
Sbjct: 631 DKVPVIYEEMITSGCAPDRKARAMLRSG 658
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/313 (21%), Positives = 128/313 (40%), Gaps = 40/313 (12%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
++ +L + G K ++ R+++ + + P YN +I FG+ + H AF +
Sbjct: 371 VFSRILAGFRDRGDWQKAFAVLREMQA-SGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNK 429
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ + P+V T+N LI + + E+++ M+ P T TY +++ N
Sbjct: 430 MREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMI-------N 482
Query: 312 LPRMEKIYELVKHHV-DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
L ++ +E V+ + + KE L+ +I + V R + + +
Sbjct: 483 LLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAI------------- 529
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
DC+E M+ D K S T + +V++Y + D N VK +
Sbjct: 530 ----------DCIEAMKA---DGL--KPSPT---MYHALVNAYAQRGLADHALNVVKAMK 571
Query: 431 SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRR 490
+ G + + +S + + RRV E SVL+ M + T+ + A Q
Sbjct: 572 ADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFD 631
Query: 491 KVNQVLGLMCKNG 503
KV + M +G
Sbjct: 632 KVPVIYEEMITSG 644
>gi|225440005|ref|XP_002276355.1| PREDICTED: pentatricopeptide repeat-containing protein At2g37230
[Vitis vinifera]
Length = 763
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 93/181 (51%), Gaps = 10/181 (5%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
+ T TYN ++ + + + F ++K E ISP +VTYNT+I+ + R+ ++ E
Sbjct: 254 MPTCHTYNIMIWGFFLSLKVETANRFFEEMK-ERRISPDVVTYNTMINGYYRIKKMEEAE 312
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLL 303
F E+K N+ P V +Y +I GY++ G+V++ +++ MK+ + P+ TY LL
Sbjct: 313 KFFVEMKGRNIEPTVISYTTMIKGYVSV---GRVDDGLRLFEEMKSFGIKPNAVTYSTLL 369
Query: 304 RGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL-I 360
G + + + E+V+ ++ K+ + +I K D + +A++RL I
Sbjct: 370 PGLCDGEKMLEAQNVVKEMVERYIAPKDNSIFMRLITCQCKAGQLDAAADVLKAMIRLSI 429
Query: 361 P 361
P
Sbjct: 430 P 430
>gi|356554511|ref|XP_003545589.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 421
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/333 (19%), Positives = 148/333 (44%), Gaps = 10/333 (3%)
Query: 140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLG 198
+L W + ++ +++ I G++ +V L +F+ +K +N+L+
Sbjct: 89 ILEWILEKMLKENEKDRDLFSELIFLCGKVKDVMLGMRVFSSMEATGVKPNSLVFNSLIS 148
Query: 199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS 258
+ + SLF ++ + P TYN IS F + VD M A + K + L
Sbjct: 149 VCLSSHDIVTAVSLFEIMESSESYKPDFHTYNIFISAFSKSGNVDAMLAWYSAKKAARLG 208
Query: 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
P++ + LI+G + + + + I++ M ++P + +L G L R E+
Sbjct: 209 PDLQMFESLISGCVNSRKFKIADRIFEEMMISGIVPSASIIESMLNGICKQKRLGRAEEF 268
Query: 319 YELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR-----LIPEKEYRPWLNVLL 373
+ ++ ++ Y + + +++E L++ + ++ +
Sbjct: 269 FTFAMDSGWEINENMVDKLVAMYLQLG---KAEEMEGLLKTMMKPCVTTTGVLTRIHCGI 325
Query: 374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
+++YA D L+++E ++ + S T+ + ++ SYFR A D+L F++ +
Sbjct: 326 VKMYAMVDRLDDIEFAVGRMLKQGLSFTSADDVEKVICSYFRREAYDRLDIFLECLKRC- 384
Query: 434 WRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466
+ L +S Y + Y R +E++E V+++M++
Sbjct: 385 YVLNKSTYDLLISGYKRARLLEKVERVMEDMKS 417
>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g19440, chloroplastic; Flags: Precursor
Length = 838
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 129/337 (38%), Gaps = 64/337 (18%)
Query: 45 SFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRD--------EL---- 92
SFT +C +H +F + +R + E L + LT +S L EL
Sbjct: 450 SFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQF 509
Query: 93 ------------------LANVDDLDKVFRVLDE-----------------KGSCLFRRH 117
L LD+ FR+ E G C ++
Sbjct: 510 LNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKL 569
Query: 118 SNGYAFVELMKQLGSRPR------LALEVLNWRRRQAGYG-------TPMTKEEYTKGIK 164
+ F++ M + G +P L + N + + M + YT +
Sbjct: 570 DEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVM 629
Query: 165 FAG--RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
G + + + F E +K+++ YN L+ AY +G L D+K +
Sbjct: 630 IDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG- 688
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
ISP+ TY +LI + V+ + F+E++ L PNVF Y LI GY KVE
Sbjct: 689 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVE 748
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
+ + M + V P+ TY +++ GYA GN+ ++
Sbjct: 749 CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRL 785
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 84/187 (44%), Gaps = 5/187 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
+T I + V+ A LF++ + + T+N ++ G D+ +F++
Sbjct: 276 FTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDE-AFMFKEKM 334
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E + P+++TY+ L+ R + +E+ PNV YN LI ++ A
Sbjct: 335 VERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSL 394
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG---NLPRMEKIYELVKHHVDGKEFPLI 334
K EI +M + + ++TY L++GY +G N R+ K + +V+ F +
Sbjct: 395 NKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSV 454
Query: 335 RAMICAY 341
++C++
Sbjct: 455 ICLLCSH 461
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 2/155 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I+ R + +A +L + +K + TY +L+ ++ + LF +++
Sbjct: 661 YNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR 720
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E + P++ Y LI +G+L + +E +E+ N+ PN TY +I GY
Sbjct: 721 MEG-LEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNV 779
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ + M+ ++PD+ TY + GY G +
Sbjct: 780 TEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGV 814
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F D + + P TY+ LI + V+ + + K + + P+V+TY+ +I G
Sbjct: 574 MFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGC 633
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
A + +E + M + V P+T Y L+R Y SG L ++ E +KH
Sbjct: 634 CKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKH 686
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 174 LAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
LA D+F ANK + + T N LL + + KC F + K +SP + + T
Sbjct: 222 LALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK--GVSPDVYLFTTA 279
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY----QMMK 288
I+ F + V+ F +++++ ++PNV T+N +I G M G+ +E + +M++
Sbjct: 280 INAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGL---GMCGRYDEAFMFKEKMVE 336
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
G + P TY +L++G + R+ Y ++K K FP
Sbjct: 337 RG-MEPTLITYSILVKGLTRA---KRIGDAYFVLKEMTK-KGFP 375
>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
Length = 668
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 9/226 (3%)
Query: 145 RRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYN 203
R G + Y I G+ N + A D F + + ++ + T+N L+ A+
Sbjct: 393 REMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKG 452
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G D+ LF +++ E+N P TYN +I++ G + +EA E+K+ L PN+ T
Sbjct: 453 GRHDRAAELFEEMR-ESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIIT 511
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
Y L+ Y + + + + + MKA + P Y L+ YA G + + +K
Sbjct: 512 YTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMK 571
Query: 324 HHVDGKEFPL--IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
DG E + + ++I A+ + R+ + ++++ + E RP
Sbjct: 572 --ADGLEVSILVLNSLINAFGE---DRRVVEAFSVLQFMRENGLRP 612
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 79/377 (20%), Positives = 154/377 (40%), Gaps = 18/377 (4%)
Query: 134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE--AANKHLKTIG 191
P ALE+L QA TP + T I G V A LF E A +
Sbjct: 244 PDAALELLA--SAQAIGLTPRSNA-VTALISALGTAGRVAEAEALFLEFFLAGEIKPRTR 300
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YNALL Y+ G + + D + ++P TY+ L+ + R + +E
Sbjct: 301 AYNALLKGYVRIGSLKNAEQVL-DEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKE 359
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + P+ + ++ ++AG+ W K + + M+A V PD + Y +++ +
Sbjct: 360 MEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNC 419
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
L + ++ + +I A+ K DR ++ MR E P
Sbjct: 420 LGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMR---ESNCPPGTTT 476
Query: 372 --LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
++I + +++ E +E +++ E V + +V Y R + + ++
Sbjct: 477 YNIMINLLGEQEHWEGVEAMLSEMKEQGL-VPNIITYTTLVDVYGRSGRYKEAIDCIEAM 535
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
++ G + ++YH+ + YA + + +V+K M K D + + ++ G+
Sbjct: 536 KADGLKPSPTMYHALVNAYAQRGLADHALNVVKAM---KADGLEVSILVLNSLINAFGED 592
Query: 490 RKVNQ---VLGLMCKNG 503
R+V + VL M +NG
Sbjct: 593 RRVVEAFSVLQFMRENG 609
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 2/148 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLK 217
YT + GR A D LK T Y+AL+ AY GL+D ++ + +K
Sbjct: 512 YTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMK 571
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + SI+ N+LI+ FG V + Q ++++ L P+V TY L+ + +
Sbjct: 572 AD-GLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQF 630
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
KV IY+ M PD +L G
Sbjct: 631 DKVPVIYEEMITSGCAPDRKARAMLRSG 658
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/313 (21%), Positives = 128/313 (40%), Gaps = 40/313 (12%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
++ +L + G K ++ R+++ + + P YN +I FG+ + H AF +
Sbjct: 371 VFSRILAGFRDRGDWQKAFAVLREMQA-SGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNK 429
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ + P+V T+N LI + + E+++ M+ P T TY +++ N
Sbjct: 430 MREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYNIMI-------N 482
Query: 312 LPRMEKIYELVKHHV-DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
L ++ +E V+ + + KE L+ +I + V R + + +
Sbjct: 483 LLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAI------------- 529
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
DC+E M+ D K S T + +V++Y + D N VK +
Sbjct: 530 ----------DCIEAMKA---DGL--KPSPT---MYHALVNAYAQRGLADHALNVVKAMK 571
Query: 431 SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRR 490
+ G + + +S + + RRV E SVL+ M + T+ + A Q
Sbjct: 572 ADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFD 631
Query: 491 KVNQVLGLMCKNG 503
KV + M +G
Sbjct: 632 KVPVIYEEMITSG 644
>gi|168063537|ref|XP_001783727.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664733|gb|EDQ51441.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 445
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 121/251 (48%), Gaps = 20/251 (7%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAAN--KHLKTIGTYNALLGAYMYNGLSDK 208
G P+ Y IK G + A L E A T+N L+ A+ ++ +K
Sbjct: 90 GCPLITSSYNTLIKGYGLDGQPEEAMKLLQEMAKDVNSKPNDRTFNMLIKAWAHDKNPEK 149
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
+++ + + A + P +V+YNTL +F +L E E+++ L PN TY +I
Sbjct: 150 ARNVI-SMMRAAGVGPDVVSYNTLAQLFAKLGKPWDAENVITEMQNVYLRPNERTYGIVI 208
Query: 269 AGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH- 324
GY+ A G+++E + + MK + P + L++GY+ S +++K+++L+++
Sbjct: 209 NGYIAA---GQIDESLRLIERMKMDGISPTIAVFNHLVKGYSESMKPHKVDKVFKLMENF 265
Query: 325 --HVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKE 380
D + F LI C+ T I + +A++ + E + +P + +L++ Y+++
Sbjct: 266 GVKPDVQTFGLIMNAWCS------TGLIDEAKAVLLRMKEYDLQPDVMAYSILVKGYSRQ 319
Query: 381 DCLEEMEKSIN 391
EE E +N
Sbjct: 320 GRPEEGEAFLN 330
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ T+ ++ A+ GL D+ +++ +K E ++ P ++ Y+ L+ + R + EA
Sbjct: 271 VQTFGLIMNAWCSTGLIDEAKAVLLRMK-EYDLQPDVMAYSILVKGYSRQGRPEEGEAFL 329
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ D NL PNV TY +I+GY + ++Q M++ V P+ T+ L+ G+ +
Sbjct: 330 NIMIDENLKPNVITYTTVISGYCSLAQMDDAMRVFQEMRSRSVFPNMQTFRTLIWGFKEA 389
Query: 310 GNLPRMEKIYELVK 323
R E+I E ++
Sbjct: 390 RWPRRAEEILEYIR 403
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
R+ DL D+ A Y+ L+ Y G ++ ++ F ++ + N+ P+++
Sbjct: 296 RMKEYDLQPDVMA------------YSILVKGYSRQGRPEEGEA-FLNIMIDENLKPNVI 342
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TY T+IS + L +D FQE++ ++ PN+ T+ LI G+ A + EEI + +
Sbjct: 343 TYTTVISGYCSLAQMDDAMRVFQEMRSRSVFPNMQTFRTLIWGFKEARWPRRAEEILEYI 402
Query: 288 KAGPVMPD 295
+ PD
Sbjct: 403 RKAGFTPD 410
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/308 (20%), Positives = 130/308 (42%), Gaps = 26/308 (8%)
Query: 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLLLVDHMEAAFQEIKDSNL 257
M G + +S ++L+++ + P+ TY L+S GRL Q++++ N+
Sbjct: 1 MSRGDHRQVRSTLKNLRRDGH-RPAKETYTLLLSSLISDGRL---GEGPLLLQQMEEDNV 56
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
P+ +N L+ GY A + E + MK T++Y L++GY G K
Sbjct: 57 IPDAIFFNTLLNGYCEAGKMKEAEALVLEMKERGCPLITSSYNTLIKGYGLDGQPEEAMK 116
Query: 318 IYELVKHHVDGKEFPLIRA---MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL-- 372
+ + + V+ K P R +I A++ ++ + + ++MR N L
Sbjct: 117 LLQEMAKDVNSK--PNDRTFNMLIKAWAHDKNPEKARNVISMMRAAGVGPDVVSYNTLAQ 174
Query: 373 ----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
L + + E+ + EM+ E R +++ Y +D+ ++R
Sbjct: 175 LFAKLGKPWDAENVITEMQNVYLRPNE--------RTYGIVINGYIAAGQIDESLRLIER 226
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+ G ++++ + Y+ + +++ V K MEN+ + +TF ++ A+ + G
Sbjct: 227 MKMDGISPTIAVFNHLVKGYSESMKPHKVDKVFKLMENFGVKPDVQTFGLIMNAWCSTGL 286
Query: 489 RRKVNQVL 496
+ VL
Sbjct: 287 IDEAKAVL 294
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 73/170 (42%), Gaps = 1/170 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
TI +N L+ Y + K +F+ L + + P + T+ +++ + L+D +A
Sbjct: 235 TIAVFNHLVKGYSESMKPHKVDKVFK-LMENFGVKPDVQTFGLIMNAWCSTGLIDEAKAV 293
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+K+ +L P+V Y+ L+ GY + E +M + P+ TY ++ GY
Sbjct: 294 LLRMKEYDLQPDVMAYSILVKGYSRQGRPEEGEAFLNIMIDENLKPNVITYTTVISGYCS 353
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
+ ++++ ++ R +I + + R ++I +R
Sbjct: 354 LAQMDDAMRVFQEMRSRSVFPNMQTFRTLIWGFKEARWPRRAEEILEYIR 403
>gi|255660872|gb|ACU25605.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 484
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + Z MK + P+ TY LL G N
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVZEMKGXGIKPNAITYSTLLPGLC---N 267
Query: 312 LPRMEKIYELVKHHVD 327
+M + J+K +D
Sbjct: 268 AEKMSEARVJLKEMMD 283
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+TI +YNAL + G + F + E I P+ T+N +I F V+
Sbjct: 113 RTIKSYNALFKVILRRGRYMMAKRYFNKMLSEG-IEPTRHTFNVMIWGFFLSGKVETANR 171
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
F+++K +SP+V TYN +I GY + E+ + MK + P TY L++GY
Sbjct: 172 FFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYV 231
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G +G+ V+ A F + ++ + + TYN ++ Y ++ + F ++K
Sbjct: 159 GFFLSGK---VETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGR- 214
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
NI P++VTY TLI + + VD ZE+K + PN TY+ L+ G A +
Sbjct: 215 NIEPTVVTYTTLIKGYVSVDQVDDALRLVZEMKGXGIKPNAITYSTLLPGLCNAEKMSEA 274
Query: 281 EEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNL 312
J + M + P D + ++ L+ + SGNL
Sbjct: 275 RVJLKEMMDKYLAPTDNSIFMRLIXSHCKSGNL 307
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 85/190 (44%), Gaps = 16/190 (8%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
AL+ W R + +E + K I+ GR + ++ A + + K L+ +
Sbjct: 28 ALQFFRWVERSNLF--EHNRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVM 85
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLLLVDHMEAAFQEI 252
++ +Y G+ + +F+ ++ E + +I +YN L V GR ++ F ++
Sbjct: 86 MIDSYGKEGIVQESVKMFQKME-ELXVERTIKSYNALFKVILRRGRYMMAKRY---FNKM 141
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ P T+N +I G+ ++ GKVE ++ MK+ + PD TY ++ GY
Sbjct: 142 LSEGIEPTRHTFNVMIWGF---FLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRV 198
Query: 310 GNLPRMEKIY 319
+ EK +
Sbjct: 199 KKMEEAEKYF 208
>gi|225452658|ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic [Vitis vinifera]
gi|296087770|emb|CBI35026.3| unnamed protein product [Vitis vinifera]
Length = 675
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 148/364 (40%), Gaps = 39/364 (10%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNA 195
+L +L+W +A Y + Y I+ R +LA LF E + L TY+
Sbjct: 138 SLALLDWINEEASYSPSVFA--YNVVIRNVLRAKQWELAHGLFEEMRQRALAPDRYTYST 195
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ + G+ D S + ++++ +S +V Y+ LI + +L + F +K S
Sbjct: 196 LITHFGKEGMFDSALSWLQKMEQD-RVSGDLVLYSNLIELSRKLCDYSKAISIFSRLKRS 254
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
+SP++ YN +I + A ++ + + M+AG VMPDT +Y LL Y +G
Sbjct: 255 GISPDLVAYNSMINVFGKAKLFREARLLLPEMRAGGVMPDTVSYSTLLSMYVENGKYVEA 314
Query: 316 EKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIR 375
++ + + MI Y + + ++ MR + + N LL R
Sbjct: 315 LSVFSEMNEVRCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPGIVSYNTLL-R 373
Query: 376 VYAKEDCLEE----------------------MEKSINDAFEHKTSVTTVRIMR------ 407
VY + + E M K + EH+ + V+ M+
Sbjct: 374 VYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQNRGIEP 433
Query: 408 ------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL 461
I+S + + +D+ A ++ S+G + + LY + +V Y V + +L
Sbjct: 434 NAITYSTIISIWDKAGKLDRAAMLFQKLRSSGIEIDQVLYQTMIVAYERAGLVAHAKRLL 493
Query: 462 KEME 465
E++
Sbjct: 494 HELK 497
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 20/174 (11%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN ++ Y + +K +L ++++ I P+
Sbjct: 378 AELFGEAI--HLFRLMQRKDIEQNVVTYNTMIKIYGKSLEHEKATNLVQEMQNRG-IEPN 434
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++ + +D FQ+++ S + + Y +I Y A + + +
Sbjct: 435 AITYSTIISIWDKAGKLDRAAMLFQKLRSSGIEIDQVLYQTMIVAYERAGLVAHAKRLLH 494
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
+K +P T + +L G R+E+ + + D E I C
Sbjct: 495 ELKRPDNIP-RETAITILAGAG------RIEEATWVFRQAFDAGEVKDITVFGC 541
>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 136/317 (42%), Gaps = 9/317 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+++AL+G NG D+ FRD+K A ++P V Y LI F R ++ E
Sbjct: 239 SFSALIGLLSKNGCLDQALKYFRDMKN-AGLAPDNVIYTILIGGFCRNGVMSEALKVRDE 297
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + +V TYN ++ G M + +E++ M V PD T+ L+ GY+ GN
Sbjct: 298 MLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGN 357
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ + ++E++ + +I + K S +++ E +I + Y ++
Sbjct: 358 MNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVN--ELWNDMISRRIYPNHISY 415
Query: 372 -LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC--IVSSYFRCNAVDKLANFVKR 428
+LI Y C+ E + ++ E T I+ C IV Y R K F+
Sbjct: 416 GILINGYCNMGCVSEAFRLWDEMVEKGFEAT---IITCNTIVKGYCRAGNAVKADEFLSN 472
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
G Y++ + + + ++ +++ +MEN + T+ ++ ++ G+
Sbjct: 473 MLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGR 532
Query: 489 RRKVNQVLGLMCKNGYD 505
++ ++ M + G +
Sbjct: 533 MQEAELIMLKMIERGVN 549
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 4/183 (2%)
Query: 172 VDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
VDLA +++ E ++ + T N ++ A N + +S D++ E + P +VTYN
Sbjct: 78 VDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDME-EKGVFPDVVTYN 136
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKA 289
TLI+ + R L++ + L P VFTYN +I G + + + + +M+K
Sbjct: 137 TLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKI 196
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
G + PDT TY +LL + N+ E+I++ + + A+I SK D+
Sbjct: 197 G-MSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQ 255
Query: 350 IKK 352
K
Sbjct: 256 ALK 258
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 2/150 (1%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
V A L+ E K + TI T N ++ Y G + K ++ + I P +TYN
Sbjct: 428 VSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKG-IVPDGITYN 486
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
TLI+ F + +D A ++++S L P+V TYN ++ G+ + E I M
Sbjct: 487 TLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIER 546
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
V PD +TY L+ G+ NL ++++
Sbjct: 547 GVNPDRSTYTSLINGHVTQNNLKEAFRVHD 576
Score = 38.5 bits (88), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264
L + C++ FR LK + + SI N+L+ ++ VD +QE+ S + NV+T
Sbjct: 43 LREGCEA-FRVLKSKG-LCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTL 100
Query: 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
N +I + M+ V PD TY L+ Y G L E+ +EL+
Sbjct: 101 NIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLL---EEAFELM 155
>gi|255660876|gb|ACU25607.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 484
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGSGIKPNAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E++ ++ + + +I ++ K D + +A++RL
Sbjct: 271 MSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 127/295 (43%), Gaps = 24/295 (8%)
Query: 59 FPTLVRLLSE---TLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFR 115
F +RLL+E PD R L T+ + + +F + E+G C+
Sbjct: 95 FDEALRLLAEMRDNGCVPDVRTYNCLISTLGKA-----GRLSEAFTLFAEMRERG-CV-- 146
Query: 116 RHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVD 173
+ + + L+ LG R + A+E+L R +G P Y+ I G+
Sbjct: 147 --PDTFTYNSLIYGLGKVGRSQKAMELLEEMER---HGCPPDVMTYSSLITGLGKDGETV 201
Query: 174 LAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
A LF E + K T+ AL+ A G D L ++K E + P +VTYN L
Sbjct: 202 KAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMK-ERGVKPGVVTYNAL 260
Query: 233 ISVFGRLLLVDHMEA--AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
I+ FG++ D +EA E+K + P+V TY+ LI G + A + ++ + M+
Sbjct: 261 IAGFGKV--GDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKE 318
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
PDT TY L+ G +G L ++++ +K + +I A K +
Sbjct: 319 GCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAA 373
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 114/279 (40%), Gaps = 10/279 (3%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I GR + A ++ AE K K + TYN L+ G D+ L +++
Sbjct: 47 YSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMR 106
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ P + TYN LIS G+ + F E+++ P+ FTYN LI G
Sbjct: 107 DNGCV-PDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRS 165
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
K E+ + M+ PD TY L+ G G + K+++ +K + A+
Sbjct: 166 QKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTAL 225
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL---NVLLIRVYAKEDCLEEMEKSINDAF 394
+ A K R+ L+ + E+ +P + N L+ D +E ++ D
Sbjct: 226 MDALGKAG---RVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAY--NLLDEM 280
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
+ V C+++ + + +D+ +K+ E G
Sbjct: 281 KRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEG 319
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ GL + LF D K +P +VTY+TLI+ G+ V+ F+E
Sbjct: 326 TYNTLINGLGKAGLLNDAGRLF-DRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEE 384
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + P++FTY +I A + ++ M+ + PD TY L G
Sbjct: 385 MESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGR 444
Query: 312 LPRMEKIYELVKHH 325
KI+E +K
Sbjct: 445 FKEARKIFEDMKES 458
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ- 250
TYN+LL A G ++ Q LF +LK A +P +V+Y+ LI+ GR EAA +
Sbjct: 11 TYNSLLNALAKAGQCEEAQLLFEELKA-AKWTPDVVSYSCLINSLGR---AGKWEAALEV 66
Query: 251 --EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
E++ PN++TYN L+ A + + + M+ +PD TY L+
Sbjct: 67 VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGK 126
Query: 309 SGNL 312
+G L
Sbjct: 127 AGRL 130
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 3/145 (2%)
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
SP++VTYN+L++ + + + F+E+K + +P+V +Y+ LI A W E
Sbjct: 6 SPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALE 65
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342
+ M+A P+ TY L+ +G + ++ L+ D P +R C S
Sbjct: 66 VVAEMQAKGCKPNLWTYNTLVDCLGKAG---QFDEALRLLAEMRDNGCVPDVRTYNCLIS 122
Query: 343 KCSVTDRIKKIEALMRLIPEKEYRP 367
R+ + L + E+ P
Sbjct: 123 TLGKAGRLSEAFTLFAEMRERGCVP 147
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 85/194 (43%), Gaps = 8/194 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I G+ VD A LF+E K L + TYNA L + G + + +F D+K
Sbjct: 397 YCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMK 456
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E+ + P + TY+ L+ + VD +E+ + + + ++ + +T+ W
Sbjct: 457 -ESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLE-ILTS--W 512
Query: 278 GKVEEIYQMMK---AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
G V+E +++++ + + P ++Y L+ A +G + E +K +
Sbjct: 513 GNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSY 572
Query: 335 RAMICAYSKCSVTD 348
++I A + D
Sbjct: 573 SSLISALGQTGQID 586
Score = 41.6 bits (96), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 170 NNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
NVD A +L A +K L +YNAL+ A G + + DLK++ P IV+
Sbjct: 513 GNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGG-KPDIVS 571
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
Y++LIS G+ +D +E+ L + +Y+ L+
Sbjct: 572 YSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLV 611
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/395 (21%), Positives = 160/395 (40%), Gaps = 26/395 (6%)
Query: 94 ANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALE--VLNWRRRQAGYG 151
V + ++V RV+ + R + + L+ G +++E + + +R+
Sbjct: 336 GRVVEAEQVLRVMKNQ-----RIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVP 390
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQ 210
+T G+ AG++ A LF+E +K LK TY AL+ Y G +
Sbjct: 391 DFVTYTSMIHGLCQAGKVVE---ARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAF 447
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
SL + E ++P++VTY L+ + VD E+ + L PNV TYN LI G
Sbjct: 448 SLHNQMV-EKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALING 506
Query: 271 YMTAWMWGKVEEIYQMMKA---GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
G +E+ ++M+ PDT TY ++ Y G M K +EL++ +D
Sbjct: 507 LCKV---GNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMG---EMAKAHELLRIMLD 560
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME 387
P I + ++ ++ E L++ + +K P N K+ C+
Sbjct: 561 KGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMP--NATTFNSLMKQYCIRNNM 618
Query: 388 KS---INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSK 444
++ I + V ++ + + + + K G+ L + Y+S
Sbjct: 619 RATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSL 678
Query: 445 MVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
+ + +++ EE + +EM + K+ + I
Sbjct: 679 IKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIF 713
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 107/236 (45%), Gaps = 26/236 (11%)
Query: 168 RINNVDLAADLFAEA--ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
++ N++ A L E A TI TY ++ AY G K L R + + + P+
Sbjct: 509 KVGNIEQAVKLMEEMDLAGFFPDTI-TYTTIMDAYCKMGEMAKAHELLR-IMLDKGLQPT 566
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
IVT+N L++ F +++ E + + D + PN T+N L+ Y EIY+
Sbjct: 567 IVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYK 626
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA----MICAY 341
M A V+PDTNTY +L++G+ + N M++ + L K V+ K F L A +I +
Sbjct: 627 GMHAQGVVPDTNTYNILIKGHCKARN---MKEAWFLHKEMVE-KGFSLTAASYNSLIKGF 682
Query: 342 SKCSVTDRIKKIEALMR---LIPEKEYRP-----------WLNVLLIRVYAKEDCL 383
K + +K+ MR I EKE W N L + A E CL
Sbjct: 683 YKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLELCDEAIEKCL 738
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/329 (20%), Positives = 136/329 (41%), Gaps = 14/329 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN +L G + SL ++ N+ P +V+Y+ ++ + ++ + + +E
Sbjct: 254 SYNIILHLLCQLGKVKEAHSLLIQMEFRGNV-PDVVSYSVIVDGYCQVEQLGKVLKLMEE 312
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ L PN +TYN +I+ + E++ ++MK + PD Y L+ G+ SGN
Sbjct: 313 LQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGN 372
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI--EALMRLIPEKEYRPWL 369
+ K+++ +K +F +MI + +K+ E L + + E
Sbjct: 373 VSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVT--- 429
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
LI Y K ++E S+++ K V +V +C VD +
Sbjct: 430 YTALIDGYCKAGEMKE-AFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEM 488
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
G + Y++ + +E+ +++EM+ T+ + AY G+
Sbjct: 489 SEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEM 548
Query: 490 RKVNQVLGLMCKNG-------YDVPVNAF 511
K +++L +M G ++V +N F
Sbjct: 549 AKAHELLRIMLDKGLQPTIVTFNVLMNGF 577
>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 5/223 (2%)
Query: 136 LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK-HLKTIGTYN 194
A+ +L + + T T G+ G+I A +LF E + H + +YN
Sbjct: 141 FAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKE---AVELFNEMVRRGHEPNVISYN 197
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
++ G + +F+ +++ P +VTYNT+I + LV+ E+ D
Sbjct: 198 TIINGLCKTGNTSMAVDVFKKMEQNG-CKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLD 256
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ PNVFTYN ++ G+ + +++ M VMPDT T +L+ G G +
Sbjct: 257 RGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSE 316
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357
++E + A++ Y + + KK+ +M
Sbjct: 317 ARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIM 359
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
V+ A + +E ++ + + TYN ++ + G ++ LF+++ ++ P VT
Sbjct: 244 VNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGR-DVMPDTVTLT 302
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
L+ + +V F+ + + + PN+ TYN L+ GY + + ++++++M
Sbjct: 303 ILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQ 362
Query: 291 PVMPDTNTYLLLLRGYAHS 309
P ++Y +L+ G+ S
Sbjct: 363 GCAPGVHSYNILINGFCKS 381
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 23/259 (8%)
Query: 82 TQTVSALRDELLAN--VDDLDKVFRVLDEKGS----CLFRRHSNGYAFVELMKQLGSRPR 135
T T++ L D L V + VF + EKG + +GY LM +
Sbjct: 298 TVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNE------ 351
Query: 136 LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK--TIGTY 193
A +V RQ G Y I + +D A L AE +K L T+ TY
Sbjct: 352 -AKKVFEIMIRQ---GCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTV-TY 406
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
+ L+ G + ++F+++ + P++VTY+ L+ F + +D + ++
Sbjct: 407 STLMQGLCQFGRPKEALNIFKEMCSYG-LLPNLVTYSILLDGFCKHGHLDEALKLLKSMQ 465
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
+ L PN+ + LI G A +E++ + A + P TY ++++G G
Sbjct: 466 EKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEG--- 522
Query: 314 RMEKIYELVKHHVDGKEFP 332
++ Y+L + D P
Sbjct: 523 LSDEAYDLFRKMEDDGFLP 541
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 8/182 (4%)
Query: 133 RPRLALEVLNWRRRQAGYGTP---MTKEEYTKGIKFAGRINNVDLAADLFAEAANKH-LK 188
+ RL + + + G P T G G++N A LF E + +
Sbjct: 240 KDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNE---ATRLFKEMVGRDVMP 296
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T L+ G+ + + +F + E + P+I TYN L+ + L++ +
Sbjct: 297 DTVTLTILVDGLCKEGMVSEARLVFETMT-EKGVEPNISTYNALMDGYCLQRLMNEAKKV 355
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F+ + +P V +YN LI G+ + + + + M + PDT TY L++G
Sbjct: 356 FEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQ 415
Query: 309 SG 310
G
Sbjct: 416 FG 417
>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Vitis vinifera]
Length = 848
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 128/300 (42%), Gaps = 7/300 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLK-KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
T N ++ + G + K +F +K K + P +VT+ T+I ++ +++ + AF
Sbjct: 304 TLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFN 363
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ L PN+ +YN LI Y + M + ++ +K PD +Y LL Y SG
Sbjct: 364 TMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSG 423
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAY-SKCSVTDRIKKIEALMRLIPEKEYRPWL 369
+ K++EL++ + A+I AY SK +T+ ++ + + R +P +
Sbjct: 424 KPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMER----NGVQPNI 479
Query: 370 NVLLIRVYAKEDCLEEME-KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+ + A C ++++ KS+ A E + + SY DK + +
Sbjct: 480 VSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRA 539
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+ + Y+ + + E L EM + KI SK+ + + AY+ GQ
Sbjct: 540 MRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQ 599
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 90/406 (22%), Positives = 162/406 (39%), Gaps = 41/406 (10%)
Query: 127 MKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH 186
+ Q+GS +++V W + Q Y + Y I+ R N VD A LF E
Sbjct: 136 ITQIGSLEH-SVQVFRWMKNQKNYCA--RNDIYNMMIRLHARHNIVDQARGLFFEMQKWR 192
Query: 187 LKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM 245
K TYNAL+ A+ G ++ D+ + A I PS TYN LI+ G
Sbjct: 193 CKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAA-IPPSRSTYNNLINACGSSGNWKEA 251
Query: 246 EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+++ ++ + P++ T+N +++ Y + KV +++MK + PDT T ++
Sbjct: 252 LNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIV--- 308
Query: 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC--------------SVTDRIK 351
IY LVK +GK + +M S+C SV +I+
Sbjct: 309 ------------IYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIE 356
Query: 352 KIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMR 407
+ + + +P N++ LI YA +E N+ ++ V
Sbjct: 357 NCQTAFNTMLAEGLKP--NIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTS 414
Query: 408 CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467
++++Y + +K + + Y++ + Y S+ + E +L EME
Sbjct: 415 -LLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEMERN 473
Query: 468 KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
+ + + + A CGQ+ K+ VL G + A+ S
Sbjct: 474 GVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNS 519
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 41/205 (20%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV------FGRLL-LVDH 244
YN+ +G+Y+ G DK SL+R ++ + + P VTYN LIS +G L +D
Sbjct: 516 AYNSAIGSYLSVGEYDKALSLYRAMRTK-KVKPDPVTYNVLISGCCKMSKYGEALGFLDE 574
Query: 245 M----------------------------EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
M E+ F ++K P+V TY +I Y A
Sbjct: 575 MMDLKIPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAEN 634
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336
W K ++ M+ V PD+ L+R + G ++ + E ++ K+ P +
Sbjct: 635 WEKASALFLEMETDDVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMRE----KKIPFNNS 690
Query: 337 MICA-YSKCSVTDRIKKIEALMRLI 360
S CS+ ++I L++L+
Sbjct: 691 SFFEMVSACSLLREWREIIGLIKLM 715
>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/353 (21%), Positives = 145/353 (41%), Gaps = 9/353 (2%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
+K G+ V+ A +F + ++ K T TYN+++ M G +K L+ ++ E +
Sbjct: 138 VKILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEGHHEKIHELYHEMCNEGD 197
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
P +TY+ L+S F +L D+ F E+K + L P Y L+A Y + K
Sbjct: 198 CFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIYTTLLAIYFKSGDE-KAL 256
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-DG--KEFPLIRAMI 338
+ Q MK P TY L++G SG R+E Y + + + DG + LI +I
Sbjct: 257 GLVQEMKDKGCAPTVFTYTELIKGLGKSG---RVEDAYSVFLNMLKDGCKPDVVLINNLI 313
Query: 339 CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT 398
+ K + K+ MR + N ++ ++ + E S + +
Sbjct: 314 NIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASE-AASWFEKMKANG 372
Query: 399 SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEME 458
+ ++ + + N V+K ++ + G+ C + Y S + +R E
Sbjct: 373 VTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAAN 432
Query: 459 SVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
+ E++ S + + +M CG+ + + M K G + V A+
Sbjct: 433 ELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAY 485
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 107/269 (39%), Gaps = 13/269 (4%)
Query: 51 CAPATHTVFPTLVRLLSETLTYPDA-----RVRKDLTQTVSALRDELL---ANVDDLDKV 102
CAP T + L++ L ++ DA + KD + L + L+ L+
Sbjct: 267 CAPTVFT-YTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDA 325
Query: 103 FRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKG 162
++ D+ S + N + ++K L A E +W + G + Y+
Sbjct: 326 LKLFDQMRS--LKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSIL 383
Query: 163 IKFAGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
I + N V+ A L E K Y +L+ A + LF +LK+
Sbjct: 384 IDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCG 443
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
S + + Y +I G+ F E+K +P+V+ YN L++G + A M +
Sbjct: 444 RSSARI-YAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAF 502
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ M+ PD N++ ++L G A +G
Sbjct: 503 SALRTMEENGCTPDLNSHNIILNGLARTG 531
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 12/153 (7%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG------TYNALLGAYMYNGLSDKCQSL 212
Y IK G+ A DLF E +K IG YNAL+ + G+ ++ S
Sbjct: 450 YAVMIKNLGKCGRPSEAVDLFNE-----MKKIGCNPDVYAYNALMSGLVRAGMIEEAFSA 504
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
R ++ E +P + ++N +++ R + F ++KDS + P+ +YN ++
Sbjct: 505 LRTME-ENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLS 563
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ M+ + ++ + M + D TY +L
Sbjct: 564 RSGMFEEAAKLMREMGSRGFEYDHITYSSILEA 596
>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 819
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 106/244 (43%), Gaps = 33/244 (13%)
Query: 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAA 176
H+ + +L+KQ G RP + YT + GR + A
Sbjct: 381 HTEAFGIFKLLKQNGLRPDVV--------------------SYTTLLNAYGRSAQPEKAR 420
Query: 177 DLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
++F E K +YNAL+ AY G+ + SL +++K+ I P +V+ +TL++
Sbjct: 421 EVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEKDG-IPPDVVSISTLLAA 479
Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
GR ++ + K + N+ YN I Y++ + K ++Y M A V PD
Sbjct: 480 CGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDYEKALKLYATMMASNVNPD 539
Query: 296 TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR----AMICAYSKCSVTDRIK 351
TY +L+ G G K +E VD + PL + ++IC+Y K D++
Sbjct: 540 AVTYNILISGLCKLGKYAESLKFFE---DMVDLR-IPLTKEVYSSLICSYVK---QDKLA 592
Query: 352 KIEA 355
+ E+
Sbjct: 593 EAES 596
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 5/189 (2%)
Query: 137 ALEVLNWRRRQAGYGTP--MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYN 194
A+++LN R + +P +T G++ N D+ K I +YN
Sbjct: 312 AVDLLNSMREKRVQCSPDVVTYTSIIHSYYVCGQVENCKAVFDMMVAEGVK--PNIVSYN 369
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
ALLGAY +G+ + +F+ LK+ + P +V+Y TL++ +GR + F E++
Sbjct: 370 ALLGAYASHGMHTEAFGIFKLLKQNG-LRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRK 428
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
++ PN +YN LI Y +A M+ + + M+ + PD + LL +
Sbjct: 429 NSCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLAACGRCRQTTK 488
Query: 315 MEKIYELVK 323
++ + E K
Sbjct: 489 IDTVLEAAK 497
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 70/163 (42%), Gaps = 13/163 (7%)
Query: 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
+YTK + + ++A D F T N ++ + G L ++
Sbjct: 273 QYTKATGYFEMMKGANIAPDTF------------TLNIVIHCLVKVGQHGDAVDLLNSMR 320
Query: 218 -KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
K SP +VTY ++I + V++ +A F + + PN+ +YN L+ Y + M
Sbjct: 321 EKRVQCSPDVVTYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGM 380
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ I++++K + PD +Y LL Y S + +++
Sbjct: 381 HTEAFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVF 423
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 74/324 (22%), Positives = 137/324 (42%), Gaps = 19/324 (5%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA-NKHLKTIGTY 193
R A+ +++ R A P ++ Y + G N A +L + N + T+
Sbjct: 205 RWAINIMDDMLRAA---IPPSRATYNNVVNACGAAGNWKKALELCKKMIRNGVGPDLVTH 261
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL----LVDHMEAAF 249
N +L A+ NG + + ++ K ANI+P T N +I ++ VD + +
Sbjct: 262 NIVLSAFK-NGFQYTKATGYFEMMKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMR 320
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGY 306
+ K SP+V TY +I Y ++ G+VE ++ MM A V P+ +Y LL Y
Sbjct: 321 E--KRVQCSPDVVTYTSIIHSY---YVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAY 375
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
A G I++L+K + + ++ AY + + ++ +++ MR K +
Sbjct: 376 ASHGMHTEAFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNK 435
Query: 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
N LI Y +E +++ + V I ++++ RC K+ +
Sbjct: 436 VSYNA-LIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSI-STLLAACGRCRQTTKIDTVL 493
Query: 427 KRAESAGWRLCRSLYHSKMVMYAS 450
+ A+ G L Y+S + Y S
Sbjct: 494 EAAKFRGIELNIVAYNSGIGSYLS 517
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 6/152 (3%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
I YN+ +G+Y+ G +K L+ + +N++P VTYN LIS +L
Sbjct: 504 NIVAYNSGIGSYLSFGDYEKALKLYATMMA-SNVNPDAVTYNILISGLCKLGKYAESLKF 562
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F+++ D + Y+ LI Y+ + E + MKA PD TY +++ Y
Sbjct: 563 FEDMVDLRIPLTKEVYSSLICSYVKQDKLAEAESTFINMKASGCFPDVLTYTAMIQAYTD 622
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340
G+ +++L K P A+IC+
Sbjct: 623 HGSW---TSVWDLFKEMEGNAILP--DAIICS 649
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 60/307 (19%), Positives = 108/307 (35%), Gaps = 12/307 (3%)
Query: 202 YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV 261
++G + +F +K + N Y +I + R VD F E+++ P+
Sbjct: 129 FSGSLEHAVYVFCWMKNQENYCARNDIYGMMIQLHARHNQVDQARGLFFEMQEWRCKPDA 188
Query: 262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321
YN LI + A +W I M + P TY ++ +GN +K EL
Sbjct: 189 DIYNSLINAHARAGLWRWAINIMDDMLRAAIPPSRATYNNVVNACGAAGNW---KKALEL 245
Query: 322 VKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP---WLNVL---LIR 375
K + P + S + K ++ P LN++ L++
Sbjct: 246 CKKMIRNGVGPDLVTHNIVLSAFKNGFQYTKATGYFEMMKGANIAPDTFTLNIVIHCLVK 305
Query: 376 VYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR 435
V D ++ + + V T I+ SY+ C V+ + G +
Sbjct: 306 VGQHGDAVDLLNSMREKRVQCSPDVVT---YTSIIHSYYVCGQVENCKAVFDMMVAEGVK 362
Query: 436 LCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQV 495
Y++ + YAS E + K ++ + ++ + AY Q K +V
Sbjct: 363 PNIVSYNALLGAYASHGMHTEAFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREV 422
Query: 496 LGLMCKN 502
M KN
Sbjct: 423 FNEMRKN 429
>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
Length = 888
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 97/414 (23%), Positives = 170/414 (41%), Gaps = 35/414 (8%)
Query: 124 VELMKQLGSRPRLALEVLNWRRRQAGYG--------TPMTKEEYTK-----GIKFAGRIN 170
VE MK G L + V+ + AGYG + KE TK GI ++ I+
Sbjct: 311 VEEMKSEG----LEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNGIIYSNIIH 366
Query: 171 ------NVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANIS 223
N+D A +L E + I Y++++ Y KC +F LK E
Sbjct: 367 AHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLK-ECGFR 425
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
PSI++Y LI+++ ++ V A +E++ + N TY+ LI G++ + I
Sbjct: 426 PSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSI 485
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
++ M + PD Y LL+ + GN+ R +I+E +K R +I ++
Sbjct: 486 FEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAV 545
Query: 344 CSVTDRIKKIEALMRLIPEKEYRPWLNVL---LIRVYAKEDCLEEMEK-SINDAFEHKTS 399
R LMR N L LIR + E + ++K SI ++ +
Sbjct: 546 AGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHT 605
Query: 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES 459
T IMR Y + K + + + +G +L +Y + + R++ +
Sbjct: 606 YTI--IMR----GYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALA 659
Query: 460 VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
V +EM KI + + I+ +A G + ++ M ++G ++ F S
Sbjct: 660 VTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTS 713
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L+ + G + L + +K E I P+I T+ + I+ + + E QE+
Sbjct: 676 YNILIDGWARRGDVWEAADLMKQMK-EDGIPPNIHTFTSYINACCKAGDMQRAENVIQEM 734
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
D L PNV T+ LI G+ + + + ++ MK+ + PD Y L+
Sbjct: 735 ADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSAGLKPDEAAYHCLV 785
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 2/174 (1%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G + YT ++ ++ A + F + LK + Y LL A +G
Sbjct: 598 GIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSA 657
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
++ R++ + I + YN LI + R V +++K+ + PN+ T+ I
Sbjct: 658 LAVTREMSFQ-KIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYIN 716
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
A + E + Q M + P+ T+ L++G+A R K +E +K
Sbjct: 717 ACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMK 770
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R +V AADL + + I T+ + + A G + +++ +++ + + P++
Sbjct: 685 RRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMA-DVGLKPNV 743
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
T+ TLI + ++ L D F+E+K + L P+ Y+ L+ ++
Sbjct: 744 KTFTTLIKGWAKVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSLLS 790
>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 73/165 (44%), Gaps = 4/165 (2%)
Query: 157 EEYTKGIKFAG--RINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLF 213
+ YT GI G + N V+ LF E ++ Y L+ AY NG + L
Sbjct: 546 DAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRL- 604
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
RD + I + TY++LI + LVD E++ LSPNV Y LI GY
Sbjct: 605 RDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCK 664
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
KV+ I Q M V P+ TY +++ G+ GN+ K+
Sbjct: 665 LGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKL 709
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+T TY++L+ GL D L +++KE +SP++V Y LI + +L + +++
Sbjct: 615 QTSATYSSLIHGLSNIGLVDSANQLLDEMRKEG-LSPNVVCYTALIGGYCKLGQMHKVDS 673
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
QE+ +N+ PN TY +I G+ ++ M ++PD TY L G+
Sbjct: 674 ILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFC 733
Query: 308 HSGNLPRMEKIYELV 322
G + K+ +L+
Sbjct: 734 KEGKMEEALKVCDLM 748
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 2/150 (1%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
VD A +LF + + + TYN ++ NG D+ ++KE + PS+VTY
Sbjct: 213 VDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKE-RVKPSLVTYG 271
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
LI+ +L D +E+ D +PN YN LI GY +I M +
Sbjct: 272 VLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISN 331
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ P++ T L++GY S + E + E
Sbjct: 332 GISPNSVTCNSLIQGYCKSNQMEHAEHLLE 361
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 14/175 (8%)
Query: 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALL 197
E R G P T Y+ I I VD A L E + L + Y AL+
Sbjct: 600 EAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALI 659
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA---FQEIKD 254
G Y G K S+ +++ N+ P+ +TY +I+ +L +M+AA E+
Sbjct: 660 GGYCKLGQMHKVDSILQEMSIN-NVHPNKITYTIMINGHCKL---GNMKAAAKLLNEMAQ 715
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGY 306
+ P+ TYN L G+ GK+EE + +M G + D TY L+ G+
Sbjct: 716 KGIVPDAVTYNALTNGFCKE---GKMEEALKVCDLMSTGGISLDDITYTTLIDGW 767
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 63/306 (20%), Positives = 119/306 (38%), Gaps = 21/306 (6%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E + + VT N LI + +E+ + L + +YN LI + G
Sbjct: 435 EKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLI---LACCKEG 491
Query: 279 KVEEIY----QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
KVEE + +M++ G + PD TY +LL G + G + ++ K + + +
Sbjct: 492 KVEEGFKLKEEMVRRG-IQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTY 550
Query: 335 RAMICAYSKCSVTDRIKKIEALMR--LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIND 392
MI Y K +R+++ E L + + + E + LIR Y + + E + + D
Sbjct: 551 GIMIDGYCK---ANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFR-LRD 606
Query: 393 AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452
+ T ++ VD + G Y + + Y
Sbjct: 607 DMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLG 666
Query: 453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG-------YD 505
++ +++S+L+EM + +K T+ IM + G + ++L M + G Y+
Sbjct: 667 QMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYN 726
Query: 506 VPVNAF 511
N F
Sbjct: 727 ALTNGF 732
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEA---NISPSIVTYNTLISVFGRLLLVDHMEAA 248
+YN L+ A G K + F+ LK+E I P + TYN L+ + ++
Sbjct: 479 SYNTLILACCKEG---KVEEGFK-LKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGL 534
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ E K + P+ +TY +I GY A + E+++Q M + + Y L+R Y
Sbjct: 535 WHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCE 594
Query: 309 SGNL 312
+GN+
Sbjct: 595 NGNM 598
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 177 DLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
+LF+ ANK L ++ T N LL + + +F D+ ++P + ++T+++
Sbjct: 148 ELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVF-DIMCHCGVTPDVYLFSTMVNA 206
Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM---MKAGPV 292
F VD F++++ ++PNV TYN +I G G+++E +Q M+ V
Sbjct: 207 FCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKN---GRLDEAFQFKEKMEKERV 263
Query: 293 MPDTNTYLLLLRG 305
P TY +L+ G
Sbjct: 264 KPSLVTYGVLING 276
>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
Length = 481
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 99/219 (45%), Gaps = 14/219 (6%)
Query: 186 HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM 245
H T+ TYN L+ GL ++ + F + E N SP I+TYNTL++ + +VD
Sbjct: 263 HPPTVVTYNILINGLCKCGLVERAINFFVQMVSE-NCSPDIITYNTLLTALCKEGMVDEA 321
Query: 246 EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
F + DSN SP + TYN +I G + ++Y M + PD T+ L+ G
Sbjct: 322 LQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWG 381
Query: 306 YAHSGNLPRMEKIYELVK------HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359
+ + ++E E+++ H ++ + L+ +C + + ++ ++ R
Sbjct: 382 FCW---IDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGRY 438
Query: 360 IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT 398
P++E + LI+ A +EE ++ E K
Sbjct: 439 KPDEE----IYSTLIKSVADAGMVEEADELHQKLIERKV 473
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 5/184 (2%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNA 195
ALEVL + Y +T Y + FA + + AA + + ++ TYN+
Sbjct: 181 ALEVLEDMAIEGCYPDLVT---YNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNS 237
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
LL + GL D+ + +KK ++ P++VTYN LI+ + LV+ F ++
Sbjct: 238 LLHSLCSCGLWDEVDEILAIMKKTSH-PPTVVTYNILINGLCKCGLVERAINFFVQMVSE 296
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
N SP++ TYN L+ M + +++ ++ P TY ++ G G +
Sbjct: 297 NCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEA 356
Query: 316 EKIY 319
K+Y
Sbjct: 357 LKLY 360
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 4/159 (2%)
Query: 164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANIS 223
K G + +++ D+ E L T YN+L+ G + + ++ +
Sbjct: 174 KHCGTVRALEVLEDMAIEGCYPDLVT---YNSLVNFASKEGKYEDAALIIYNILSHG-ME 229
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P+ +TYN+L+ L D ++ +K ++ P V TYN LI G + +
Sbjct: 230 PNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVERAINF 289
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
+ M + PD TY LL G + +++ L+
Sbjct: 290 FVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLL 328
>gi|15222796|ref|NP_175985.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174230|sp|Q9LG23.1|PPR82_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g55890, mitochondrial; Flags: Precursor
gi|8778306|gb|AAF79315.1|AC002304_8 F14J16.14 [Arabidopsis thaliana]
gi|18650654|gb|AAL75896.1| At1g55890/F14J16_4 [Arabidopsis thaliana]
gi|53828645|gb|AAU94432.1| At1g55890 [Arabidopsis thaliana]
gi|332195194|gb|AEE33315.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 398
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 40/226 (17%)
Query: 154 MTKEEYT-KGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQS 211
M+KE + + I G+ + A +F E N+ K ++ ++NALL AY + D +
Sbjct: 106 MSKEGFAARIISLYGKAGMFENAQKVFEEMPNRDCKRSVLSFNALLSAYRLSKKFDVVEE 165
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN-YLIAG 270
LF +L + +I P IV+YNTLI + A EI++ L P++ T+N L++
Sbjct: 166 LFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALLDEIENKGLKPDIVTFNTLLLSS 225
Query: 271 YMTAW------MWGKVEE----------------------------IYQMMKAGPVMPDT 296
Y+ +W K+ E ++ +KA + PD
Sbjct: 226 YLKGQFELGEEIWAKMVEKNVAIDIRTYNARLLGLANEAKSKELVNLFGELKASGLKPDV 285
Query: 297 NTYLLLLRGYAHSGNLPRMEKIY-ELVKH--HVDGKEFPLIRAMIC 339
++ ++RG + G + E Y E+VKH D F L+ +C
Sbjct: 286 FSFNAMIRGSINEGKMDEAEAWYKEIVKHGYRPDKATFALLLPAMC 331
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 5/151 (3%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A L E NK LK I T+N LL + G + + ++ + E N++ I TYN +
Sbjct: 199 AVALLDEIENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKMV-EKNVAIDIRTYNARL 257
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F E+K S L P+VF++N +I G + + E Y+ +
Sbjct: 258 LGLANEAKSKELVNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHGYR 317
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
PD T+ LLL +G+ E EL K
Sbjct: 318 PDKATFALLLPAMCKAGDF---ESAIELFKE 345
>gi|359486048|ref|XP_002270184.2| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
chloroplastic [Vitis vinifera]
gi|298204537|emb|CBI23812.3| unnamed protein product [Vitis vinifera]
Length = 659
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 92/432 (21%), Positives = 172/432 (39%), Gaps = 49/432 (11%)
Query: 111 SCLFR--RHSNGYAFVELMKQLGSRPRL-------------------ALEVLNWRRRQAG 149
SCL R + N MKQ G RP ALE++ R
Sbjct: 178 SCLIRNGKFENSLKLFHQMKQDGLRPDAVTYSTLLAGCMKVKHGYSKALELVQEMERSR- 236
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDK 208
PM Y + N A + F + ++ HL + Y++LL AY +G K
Sbjct: 237 --LPMDSVIYGTLLAVCASNNRCKEAENYFNQMKDEGHLPNVFHYSSLLNAYSADGDYKK 294
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
L +D+ K A + P+ V TL+ V+ R L + E++D + + Y L+
Sbjct: 295 ADMLVQDM-KSAGLVPNKVILTTLLKVYVRGGLFEKSRELLAELEDLGYAEDEMPYCLLM 353
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
G + + + I++ MK V D Y +++ + SG L +++ + D
Sbjct: 354 DGLAKSRRILEAKSIFEEMKKKQVKSDGYCYSIMISAFCRSGLLKEAKQLARDFEATYDK 413
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKED----- 381
+ ++ M+CAY + ++ + +MR + E P N +LI+ + KE
Sbjct: 414 YDLVMLNTMLCAYCRAG---EMESVMQMMRKMDELAISPDWNTFHILIKYFCKEKLYLLA 470
Query: 382 --CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
+E+M + E S + + + ++ + +V + + KR +C++
Sbjct: 471 YRTMEDMHNKGHQPEEELCSSLISHLGK--IRAHSQAFSVYNMLRYSKRT------MCKA 522
Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
L+ + + + R +++ V+K+ E S K F A+ G +N V+ +
Sbjct: 523 LHEKILHILVAGRLLKDAYVVVKDNEGLISKPSIKKFAT---AFMKFGNVNLINDVMKAI 579
Query: 500 CKNGYDVPVNAF 511
+GY + F
Sbjct: 580 HGSGYKIDQELF 591
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 120/291 (41%), Gaps = 17/291 (5%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
LF ++K I+ S +Y+T I G+ L + I+D ++ NV N +++
Sbjct: 123 LFDWMQKHEKITFS--SYSTYIKFMGKSLNPIKALEIYNSIQDESVRNNVSVCNSVLSCL 180
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
+ + +++ MK + PD TY LL G + K ELV+ ++
Sbjct: 181 IRNGKFENSLKLFHQMKQDGLRPDAVTYSTLLAGCMKVKH--GYSKALELVQE-MERSRL 237
Query: 332 PL---IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLE 384
P+ I + A C+ +R K+ E + ++ + P NV L+ Y+ + +
Sbjct: 238 PMDSVIYGTLLAV--CASNNRCKEAENYFNQMKDEGHLP--NVFHYSSLLNAYSADGDYK 293
Query: 385 EMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSK 444
+ + + D + V I+ ++ Y R +K + E G+ Y
Sbjct: 294 KADMLVQD-MKSAGLVPNKVILTTLLKVYVRGGLFEKSRELLAELEDLGYAEDEMPYCLL 352
Query: 445 MVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQV 495
M A RR+ E +S+ +EM+ ++ + IM A+ G ++ Q+
Sbjct: 353 MDGLAKSRRILEAKSIFEEMKKKQVKSDGYCYSIMISAFCRSGLLKEAKQL 403
>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
Length = 862
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G + Y+ I + VD A + +K +K + TYN ++ D+
Sbjct: 229 GVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRA 288
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+ + + + + + P +VTYNT+I + VD + Q + D ++ P++ TYN LI
Sbjct: 289 EGVLQHMIDKG-VKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIH 347
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
GY++ W +V + M A + PD TY LLL +G KI+
Sbjct: 348 GYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEARKIF 397
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 115/272 (42%), Gaps = 16/272 (5%)
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
N +P++VTYNT+I + VD E Q + D + +V TY+ +I G A +
Sbjct: 193 GNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDR 252
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI---RA 336
E + Q M V PD TY ++ G + + R E + ++H +D P +
Sbjct: 253 AEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGV---LQHMIDKGVKPDVVTYNT 309
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAF 394
+I K DR + +++ + +K+ +P + LI Y +E+ + + + +
Sbjct: 310 IIDGLCKAQAVDR---ADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMY 366
Query: 395 EH--KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452
V T ++ + +C K+ + R G + ++Y + YA++
Sbjct: 367 ARGLDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIR---KGIKPNVTIYGILLHGYAARG 423
Query: 453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
+ ++ +L M I + F I+ AYA
Sbjct: 424 AIADLTDLLDLMVANGISPNNYIFNIVLCAYA 455
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/300 (20%), Positives = 118/300 (39%), Gaps = 9/300 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ D+ + + + + + + +VTY+T+I + VD E Q
Sbjct: 201 TYNTIIDGLCKAQAVDRAEGVLQHMIDKG-VKLDVVTYSTIIDGLCKAQAVDRAEGVLQH 259
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ D + P+V TYN +I G A + E + Q M V PD TY ++ G +
Sbjct: 260 MIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQA 319
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL-- 369
+ R + + ++H +D P I+ C T K++ + + + P +
Sbjct: 320 VDRADGV---LQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVT 376
Query: 370 -NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
++LL + C E + I K V I ++ Y A+ L + +
Sbjct: 377 YSLLLDYLCKNGKCTE--ARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDL 434
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+ G +++ + YA + ++E + M + + T+ I+ A G+
Sbjct: 435 MVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGR 494
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N +L AY + D+ +F + + +SP +VTY LI +L VD F ++
Sbjct: 447 FNIVLCAYAKKAMIDEAMHIFSRMSQHG-LSPDVVTYGILIDALCKLGRVDDAVLKFNQM 505
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ ++PN +N L+ G T W K EE++ M V P+ + ++ + G +
Sbjct: 506 INDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQV 565
Query: 313 PRMEKIYE 320
+++ +
Sbjct: 566 MVAQRLID 573
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN L+G + G +D+ L D+ + P +++Y+TL+ + + +D+ F+E
Sbjct: 586 SYNTLIGGHCLAGRTDEAAQLL-DVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFRE 644
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ ++P TY+ ++ G + + +E+Y M+K+G D TY ++L G +
Sbjct: 645 MLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQ-QWDIYTYNIILNGLCKTN 703
Query: 311 NLPRMEKIYE 320
+ KI++
Sbjct: 704 CVDEAFKIFQ 713
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLLLVDHMEAAFQEIKDSNLSPNVFT 263
+K + LF ++ + + P++V +NT++ G++++ + + + + + PNV +
Sbjct: 531 EKAEELFFEMWDQG-VRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERV---GVRPNVIS 586
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
YN LI G+ A + ++ +M + + PD +Y LLRGY +G R++ Y L +
Sbjct: 587 YNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTG---RIDNAYCLFR 643
Query: 324 H 324
Sbjct: 644 E 644
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 86/212 (40%), Gaps = 24/212 (11%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G CL R +++M +G +P L ++ + +G GRI
Sbjct: 593 GHCLAGRTDEAAQLLDVMVSVGLKPDL-----------------ISYDTLLRGYCKTGRI 635
Query: 170 NNVDLAADLFAEAANKHLKTIG--TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+N A LF E K + T G TY+ +L + + + L+ ++ K I
Sbjct: 636 DN---AYCLFREMLRKGV-TPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQ-QWDIY 690
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TYN +++ + VD FQ + +L PN+ T+ +I +++ +
Sbjct: 691 TYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASI 750
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ ++P+ TY ++++ G L + ++
Sbjct: 751 PSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLF 782
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 53/276 (19%), Positives = 106/276 (38%), Gaps = 9/276 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ LL NG + + +F + ++ I P++ Y L+ + + +
Sbjct: 376 TYSLLLDYLCKNGKCTEARKIFYCMIRKG-IKPNVTIYGILLHGYAARGAIADLTDLLDL 434
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + +SPN + +N ++ Y M + I+ M + PD TY +L+ G
Sbjct: 435 MVANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGR 494
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ + + + + DG + Y C+V DR +K E L + ++ RP NV
Sbjct: 495 VD--DAVLKFNQMINDGVTPNSVVFNSLVYGLCTV-DRWEKAEELFFEMWDQGVRP--NV 549
Query: 372 LLIRVYAKEDCLEE---MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+ C E + + + D+ E V ++ + D+ A +
Sbjct: 550 VFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDV 609
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
S G + Y + + Y R++ + +EM
Sbjct: 610 MVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREM 645
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 65/310 (20%), Positives = 121/310 (39%), Gaps = 20/310 (6%)
Query: 211 SLFRDLKKEAN--ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
SLF + + + + P + TY+ L F RL ++H AAF I + N N L+
Sbjct: 73 SLFNRMARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLL 132
Query: 269 AGYMTAWMWGKVEEI-YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
G A + +I + M MP+ + LL+G N R+E+ EL+ +
Sbjct: 133 NGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLC---NEKRVEEALELLHTMAE 189
Query: 328 ---GKEFPLI---RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED 381
G P + +I K DR E +++ + +K + L+V+
Sbjct: 190 DGGGNCTPNVVTYNTIIDGLCKAQAVDR---AEGVLQHMIDKGVK--LDVVTYSTIIDGL 244
Query: 382 CLEEMEKSINDAFEH---KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR 438
C + +H K V I+ + AVD+ ++ G +
Sbjct: 245 CKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDV 304
Query: 439 SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL 498
Y++ + + V+ + VL+ M + + +T+ + + Y + G+ ++V + L
Sbjct: 305 VTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEE 364
Query: 499 MCKNGYDVPV 508
M G D V
Sbjct: 365 MYARGLDPDV 374
>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
Length = 1443
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/363 (22%), Positives = 146/363 (40%), Gaps = 74/363 (20%)
Query: 174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK---------------- 217
LA D+F A + T+ +NA++G Y +G D + L ++
Sbjct: 206 LAEDVFLRFAREG-ATVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLIN 264
Query: 218 --------------------KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
++A + P +TYNTLIS + +D A F+E+ S
Sbjct: 265 ARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASEC 324
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
P+++TYN +++ + + E +++ + PD TY LL +A G++ R+E+
Sbjct: 325 RPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVER 384
Query: 318 I-YELVKH-------------HVDGKEFPL---------IRAMICAYSKCSVT------- 347
+ ELVK H+ GK L +RA+ C + T
Sbjct: 385 VCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLG 444
Query: 348 --DRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTV 403
DRI + ++ + + +P L LI YAK ++ E++ + E + V
Sbjct: 445 KMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVE--SGVKPD 502
Query: 404 RIMRCIVSSYF-RCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
R+ ++ F R + KL + G++ LY + A +E+E V++
Sbjct: 503 RLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQ 562
Query: 463 EME 465
+ME
Sbjct: 563 DME 565
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/317 (21%), Positives = 146/317 (46%), Gaps = 29/317 (9%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS---VFGRLLLVDHMEAAF 249
+NAL+ AY +GL + +++F + K+ + P++ + N ++ V GRL D +
Sbjct: 785 WNALIHAYAESGLYEHARAIFDIMIKKGPL-PTVESVNGMMRALIVDGRL---DELYVVV 840
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
QE++D ++ + T ++ + A +V +IY MKA +P+ + Y +++ H+
Sbjct: 841 QELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHN 900
Query: 310 GNLPRMEKIYELVKHHVDGKEFP----LIRAMICAYSKCSVTDR-IKKIEALMR--LIPE 362
+ EL+ ++G F ++ ++ Y+ DR I+ +++ L P+
Sbjct: 901 KRF----RDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPD 956
Query: 363 KEYRPWLNVLLIRVYAKED---CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
++ L V+ R + E+ L EM K + + + ++++ +
Sbjct: 957 EDTYNTLIVMYSRNFRPEEGFTLLYEMGK--------RGLTPKLESYKILLAASGKAKLW 1008
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
++ + + G+RL RS+YH M +Y + R + E +L M+ I+ + T I+
Sbjct: 1009 EQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHIL 1068
Query: 480 YYAYATCGQRRKVNQVL 496
+Y T G + +VL
Sbjct: 1069 MTSYGTSGHPDEAEKVL 1085
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 85/195 (43%), Gaps = 8/195 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ Y G D L+ +++ +P VTY L+ G++ + +E
Sbjct: 400 TYNTMIHMYGKMGRLDLALGLYDEMRA-IGCTPDAVTYTVLVDSLGKMDRISEAGKVLEE 458
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ D+ L P + T++ LI Y + E + M V PD YL++L +A S
Sbjct: 459 MADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDE 518
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ +Y + + L + ++ A +K + D I+ + M + E +N
Sbjct: 519 TRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFE------MNP 572
Query: 372 LLI-RVYAKEDCLEE 385
L+I + K +C+ +
Sbjct: 573 LVISSILIKAECISQ 587
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ Y N ++ +L ++ K ++P + +Y L++ G+ L + + F+E
Sbjct: 959 TYNTLIVMYSRNFRPEEGFTLLYEMGKRG-LTPKLESYKILLAASGKAKLWEQADLLFEE 1017
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ N Y+ ++ Y A K E + MK + P T +L+ Y SG+
Sbjct: 1018 MRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGH 1077
Query: 312 LPRMEKIYELVK 323
EK+ +K
Sbjct: 1078 PDEAEKVLNSLK 1089
>gi|255660908|gb|ACU25623.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 481
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N L+ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E+
Sbjct: 153 FNVLIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVEM 211
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
K N+ P V TY LI GY++ + + MK + P+ TY LL G N
Sbjct: 212 KGRNIEPTVVTYTTLIKGYVSVDQVDDALRLXEEMKGFGIKPNAITYSTLLPGLC---NA 268
Query: 313 PRMEKIYELVKHHVD 327
+M + ++K VD
Sbjct: 269 EKMSEARSILKEMVD 283
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 6/153 (3%)
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G +G+ V+ A F + ++ + + TYN ++ Y ++ + F ++K
Sbjct: 159 GFFLSGK---VETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGR- 214
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
NI P++VTY TLI + + VD +E+K + PN TY+ L+ G A +
Sbjct: 215 NIEPTVVTYTTLIKGYVSVDQVDDALRLXEEMKGFGIKPNAITYSTLLPGLCNAEKMSEA 274
Query: 281 EEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNL 312
I + M + P D + ++ L+ SG+L
Sbjct: 275 RSILKEMVDKYLAPTDNSIFMRLITSQCTSGHL 307
>gi|168012346|ref|XP_001758863.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690000|gb|EDQ76369.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 367
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/358 (22%), Positives = 152/358 (42%), Gaps = 23/358 (6%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT + GR A +LF E + ++ + ++N+++GAY GL K ++ D+
Sbjct: 13 YTLVLGVLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGLFKKAWRMYEDM- 71
Query: 218 KEANISPSIVTYNTLISVFGRLLL-VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
E+ I +T +TL+S G+ L V+ E F +IK++ + P V TYN L++
Sbjct: 72 VESGIQADEITLSTLLSGVGKTQLPVETAEKIFSKIKENGILPRVETYNTLLSVLSRGGH 131
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI-- 334
+ +E+ M+ V+P+ T+ LL + G L ++Y+ + +D P +
Sbjct: 132 TERCKELEIEMQRLEVVPNIITFNTLLMMHVQGGRLKEAAEVYQRI---LDAGLKPTVVT 188
Query: 335 -RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEE----ME 387
++ Y + S ++ MR + K P L + L+I VY K EE
Sbjct: 189 YTGLVQMYCRASKHKEAIEVFLEMRRVGCK---PDLMIYSLMISVYGKAGSAEEAALVFR 245
Query: 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVM 447
+ ND + + V C++ ++ + ++ F ++G +LY+ M
Sbjct: 246 QLQNDGY-----IPNVVTWCCLIQAFGWQGKMQEIGAFFNEMLASGCLPDLTLYNVMMGA 300
Query: 448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
Y + + + M+ I + ++ M AY Q VL M + G+
Sbjct: 301 YGRYGHSVQAAILFRRMQAQGISPNAVSYDTMIQAYCHSKQAADAQIVLDQMTRAGFS 358
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 121/306 (39%), Gaps = 18/306 (5%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ + P+ TY ++ V GR L F E+ S + + ++N +I Y ++
Sbjct: 2 QKGRLKPNGHTYTLVLGVLGRAGLTIQARELFDEMLSSGVEVGLHSFNSMIGAYARKGLF 61
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP--RMEKIYELVKHHVDGKEFPLIR 335
K +Y+ M + D T LL G + LP EKI+ +K +
Sbjct: 62 KKAWRMYEDMVESGIQADEITLSTLLSGVGKT-QLPVETAEKIFSKIKENGILPRVETYN 120
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLE---EMEKSIND 392
++ S+ T+R K++E M+ + N LL+ ++ + L+ E+ + I D
Sbjct: 121 TLLSVLSRGGHTERCKELEIEMQRLEVVPNIITFNTLLM-MHVQGGRLKEAAEVYQRILD 179
Query: 393 AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452
A T VT +V Y R + + G + +Y + +Y
Sbjct: 180 AGLKPTVVTYT----GLVQMYCRASKHKEAIEVFLEMRRVGCKPDLMIYSLMISVYGKAG 235
Query: 453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG-------YD 505
EE V ++++N + T+ + A+ G+ +++ M +G Y+
Sbjct: 236 SAEEAALVFRQLQNDGYIPNVVTWCCLIQAFGWQGKMQEIGAFFNEMLASGCLPDLTLYN 295
Query: 506 VPVNAF 511
V + A+
Sbjct: 296 VMMGAY 301
Score = 42.7 bits (99), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/145 (19%), Positives = 63/145 (43%), Gaps = 2/145 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I G+ + + AA +F + N ++ + T+ L+ A+ + G + + F ++
Sbjct: 224 YSLMISVYGKAGSAEEAALVFRQLQNDGYIPNVVTWCCLIQAFGWQGKMQEIGAFFNEML 283
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ P + YN ++ +GR F+ ++ +SPN +Y+ +I Y +
Sbjct: 284 ASGCL-PDLTLYNVMMGAYGRYGHSVQAAILFRRMQAQGISPNAVSYDTMIQAYCHSKQA 342
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLL 302
+ + M PD ++ +L
Sbjct: 343 ADAQIVLDQMTRAGFSPDRSSRAML 367
>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
Length = 866
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 3/179 (1%)
Query: 148 AGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLS 206
+G + YT I GR +++ +L + + +I TYN ++ + GL
Sbjct: 170 GAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGGLD 229
Query: 207 -DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
+ LF +++ E I P IVTYNTL+ L D E F+ + + + P++ TY
Sbjct: 230 WEGLLGLFAEMRHEG-IQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYT 288
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
YL+ + KV E+ + M + +P+ ++Y +LL YA GN+ ++ L++
Sbjct: 289 YLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQE 347
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/284 (18%), Positives = 117/284 (41%), Gaps = 7/284 (2%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
LF+ ++++ P+ Y +IS+ GR L++ F+E+ +S +VF+Y LI Y
Sbjct: 129 LFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTALINSY 188
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKE 330
+ E+ + MK V P TY ++ A G + + ++ ++H +
Sbjct: 189 GRNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGGLDWEGLLGLFAEMRHEGIQPD 248
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN--VLLIRVYAKEDCLEEMEK 388
++CA S + D + E + R + E P + L+ + K + L+++ +
Sbjct: 249 IVTYNTLLCACSNRGLGD---EAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSE 305
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
+ + +V + ++ +Y R ++ + + AG Y + +Y
Sbjct: 306 LLKE-MASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLY 364
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKV 492
R +E+ + EM+ + T+ + + G ++V
Sbjct: 365 GKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEV 408
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 68/321 (21%), Positives = 131/321 (40%), Gaps = 35/321 (10%)
Query: 93 LANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPR--------LALEVLNWR 144
+ N++D VFR++ E G C+ N + L+ G R L ++V N
Sbjct: 332 IGNIEDATGVFRLMQEAG-CV----PNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTE 386
Query: 145 RRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYN 203
A Y T + + + +G F + LF + A ++++ + TY L+ A
Sbjct: 387 PDAATYNTLI--DVFGEGGYFKEVVT-------LFHDMAEENVEPNMETYEGLIFACGKG 437
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
GL D + + + ++ I PS Y +I +G+ + + + + P + T
Sbjct: 438 GLHDDAKKILLHMSEKGMI-PSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIET 496
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELV 322
YN LI + ++ + E I M V + +++ ++ G+ G K Y E+
Sbjct: 497 YNTLIYMFARGGLYKETEAILLKMGDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEME 556
Query: 323 KHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV----LLIRVYA 378
K + E L A++ Y + D E++ + K NV +++ VYA
Sbjct: 557 KSRLVPDERTL-EAVLSVYCIAGLVD-----ESVEQFQEIKASGILPNVMCYCMMLAVYA 610
Query: 379 KEDCLEEMEKSINDAFEHKTS 399
K D E + +++ ++ S
Sbjct: 611 KSDRWNEAYELLDEMLTNRAS 631
>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Cucumis sativus]
Length = 857
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/348 (21%), Positives = 145/348 (41%), Gaps = 21/348 (6%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
+ K I + NV + LF++ + + + T+N + G D+ L +
Sbjct: 219 FNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIV 278
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E ++P +++YNTLI F + + E ++ +S + PN FTYN +I G+ A M
Sbjct: 279 SEG-LTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMM 337
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELV----KHHVDGKEFP 332
++I + +PD TY L+ G + G++ R M YE + KH +
Sbjct: 338 QNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSI-----I 392
Query: 333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSI 390
L ++ SK + + + LM+ + E P W L++ K CL + +
Sbjct: 393 LYNTLVKGLSKQGL---VLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGIL 449
Query: 391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450
NDA K + + ++ Y + +DK + S G Y++ +
Sbjct: 450 NDAIA-KGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCK 508
Query: 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL 498
R+++ + K M + T+ I+ ++ + RKV++ + L
Sbjct: 509 ARKLDNVVDTFKAMLEKGCTPNIITYNILIESFC---KDRKVSEAMEL 553
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 6/197 (3%)
Query: 126 LMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK 185
L+K L S+ L L+ L + +G Y + ++ + A + +A K
Sbjct: 397 LVKGL-SKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAK 455
Query: 186 H-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDH 244
+ I T+N L+ Y DK + D I+P ++TYNTL++ + +D+
Sbjct: 456 GCIPDIFTFNTLIDGYCKQRNMDKAIEIL-DTMLSHGITPDVITYNTLLNGLCKARKLDN 514
Query: 245 MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304
+ F+ + + +PN+ TYN LI + + E+++ MK + PD T L+
Sbjct: 515 VVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLIC 574
Query: 305 GYAHSGNLPRMEKIYEL 321
G +G L +K YEL
Sbjct: 575 GLCSNGEL---DKAYEL 588
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 7/186 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y A++ + + LF ++ K+ I P I+T+N LI V + V E F +
Sbjct: 183 SYCAVISGFYKENCQIEAYHLFDEMLKQG-ICPDILTFNKLIHVLCKKGNVQESEKLFSK 241
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + PN+FT+N I G + + + + + + PD +Y L+ G+
Sbjct: 242 VMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSK 301
Query: 312 LPRME-KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI--EALMR-LIPEK-EYR 366
L E ++++V V+ EF +I + K + KI +A+ + IP++ Y
Sbjct: 302 LVEAECYLHKMVNSGVEPNEFTY-NTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYS 360
Query: 367 PWLNVL 372
+N L
Sbjct: 361 SLINGL 366
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/251 (21%), Positives = 100/251 (39%), Gaps = 16/251 (6%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN ++ G + D + I P I T+NTLI + + +D
Sbjct: 426 IWTYNLVVNGLCKMGCLSDANGILNDAIAKGCI-PDIFTFNTLIDGYCKQRNMDKAIEIL 484
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ ++P+V TYN L+ G A V + ++ M P+ TY +L+ +
Sbjct: 485 DTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKD 544
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
+ ++++ +K + + +IC CS + K E + + EKEY+
Sbjct: 545 RKVSEAMELFKEMKTRGLTPDIVTLCTLICGL--CSNGELDKAYELFVTI--EKEYKFSY 600
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT-------TVRIMRCIVSSYFRCNAVDKL 422
+ + + C E++ S+ + HK + T R+M + SY + +D
Sbjct: 601 STAIFNIMINAFC-EKLNVSMAEKLFHKMGGSDCAPDNYTYRVM---IDSYCKTGNIDLA 656
Query: 423 ANFVKRAESAG 433
F+ S G
Sbjct: 657 HTFLLENISKG 667
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
V A +LF E + L I T L+ NG DK LF ++KE S S +N
Sbjct: 547 VSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFN 606
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+I+ F L V E F ++ S+ +P+ +TY +I Y
Sbjct: 607 IMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSY 647
>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 104/231 (45%), Gaps = 9/231 (3%)
Query: 97 DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTK 156
D+ + +F+ + EKG C +N + L+ R +L + ++ + G +T
Sbjct: 383 DEAELLFKEMGEKGLC-----ANDVTYSILIDSFCRRGKLDTAI-HFLGKMIMAGIKITV 436
Query: 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRD 215
Y I ++ N+ A F E +K LK T+ +Y +L+ Y G + L+ +
Sbjct: 437 YPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHE 496
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ + I+P+ T+ TLIS R + F E+ + N+ PN TYN +I G+
Sbjct: 497 MTGKG-IAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEG 555
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK-IYELVKHH 325
K E+ M ++PDT TY L+ +G + +K I +L + H
Sbjct: 556 NTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREH 606
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 5/140 (3%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y +++ Y G K ++ D+ + +P+IVTY TLI+ + L+D E ++E+
Sbjct: 684 YTSMIDGYSKAGSVKKAFGIW-DIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEM 742
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
SN +PN TY + K +++ M G ++ +T +Y +L+RG+ G
Sbjct: 743 LVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKG-LLANTVSYNILVRGFCKLG-- 799
Query: 313 PRMEKIYELVKHHVDGKEFP 332
R+E+ +L+ +D FP
Sbjct: 800 -RVEEATKLLDEMIDNAIFP 818
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 88/406 (21%), Positives = 148/406 (36%), Gaps = 46/406 (11%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRP-RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR 168
G C + G ++ M +LG P AL L R+ G + R
Sbjct: 305 GLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKG--------KVVDAFDLVNR 356
Query: 169 INNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ V LF YNAL+ + +G D+ + LF+++ E + + VT
Sbjct: 357 VKKVGAMPSLF------------VYNALINSLCKDGKFDEAELLFKEM-GEKGLCANDVT 403
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y+ LI F R +D ++ + + V+ YN LI G+ + M
Sbjct: 404 YSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMI 463
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF-PLIRAMICAYSKCSVT 347
+ P +Y L+ GY + G L ++Y H + GK P S
Sbjct: 464 DKGLKPTVVSYTSLISGYCNKGKLHEAFRLY----HEMTGKGIAPNTYTFTTLISALFRA 519
Query: 348 DRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE------HKTSVT 401
+R+ L + E+ P N + V + C E + AFE K V
Sbjct: 520 NRMTDAFRLFDEMLEQNMMP--NEVTYNVMIEGHC---KEGNTVKAFELLNQMVQKGLVP 574
Query: 402 TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL 461
R ++SS V + F+ ++L Y + + Y + R+ + V
Sbjct: 575 DTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVC 634
Query: 462 KEMENYKIDCSKKTFWIMYYAYATCG--QRRKVNQVLGLMCKNGYD 505
+EM +D ++ YA G + + + V GL+ KN +D
Sbjct: 635 REMVKRGVDMD-----LVCYAVLIDGTIKEQDTSAVFGLL-KNMHD 674
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 12/128 (9%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TY L+ GL DK + L++++ +N +P+ VTY + R ME A
Sbjct: 716 IVTYTTLINELCKAGLMDKAELLWKEMLV-SNSTPNHVTYCCFLDHLAR---EGSMEKAV 771
Query: 250 QEIKD--SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM---MKAGPVMPDTNTYLLLLR 304
Q D L N +YN L+ G+ G+VEE ++ M + PD TY ++
Sbjct: 772 QLHNDMLKGLLANTVSYNILVRGFCK---LGRVEEATKLLDEMIDNAIFPDCITYSTIIY 828
Query: 305 GYAHSGNL 312
GNL
Sbjct: 829 QCCRRGNL 836
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 2/165 (1%)
Query: 141 LNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAY 200
L W+ TP Y + R +++ A L + L +YN L+ +
Sbjct: 737 LLWKEMLVSNSTP-NHVTYCCFLDHLAREGSMEKAVQLHNDMLKGLLANTVSYNILVRGF 795
Query: 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN 260
G ++ L ++ A I P +TY+T+I R +D + + + L P+
Sbjct: 796 CKLGRVEEATKLLDEMIDNA-IFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPD 854
Query: 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
YN+LI G A GK E+ M V P+ T+ L G
Sbjct: 855 TLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSLSHG 899
>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
[Vitis vinifera]
Length = 990
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 2/139 (1%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
GR V+ A +F E N K I ++N+L+ NG D+ F+++++E +SP
Sbjct: 330 GRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEG-LSPD 388
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+VTY+TLI FG+ V+ F E+ SPN+ TYN L+ + + ++Y
Sbjct: 389 VVTYSTLIECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCLERSGRTAEAVDLYA 448
Query: 286 MMKAGPVMPDTNTYLLLLR 304
+K + PD+ TY +L R
Sbjct: 449 KLKQQGLTPDSITYAVLER 467
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 2/155 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R NN + A +++ E + K I YN LL A + D+ +F+D+K++ + P
Sbjct: 54 RSNNSNKAFEVYVELRRRGYKLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRK-HCEPDE 112
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TY +I + G++ D FQE+ + +PN+ YN +I M K ++
Sbjct: 113 YTYTIMIRMTGKIGKADESLTLFQEMTEKGYTPNLIAYNTMIQALANNRMVDKTIFLFSK 172
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321
M P+ T+ ++L G L R++++ E+
Sbjct: 173 MVENNCRPNGFTFSVILNVLVAEGQLGRLDEVVEV 207
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E IS V YNT++S G+L + ++++K SP++F+YN LI+ + A G
Sbjct: 277 EKRISTDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRA---G 333
Query: 279 KVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+VEE I++ ++ PD ++ L+ +G++
Sbjct: 334 RVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDI 370
>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
Length = 797
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y ++ + G DK +LF ++ I P++VTY T+I + +VD E FQ+
Sbjct: 205 SYATVINGFFTEGQVDKAYNLFLEMMDRG-IQPNVVTYTTVIDGLCKAQVVDRAEGVFQQ 263
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ D + P+ TYN LI GY++ W +V + + M A + PD TY LL ++G
Sbjct: 264 MIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNG 322
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 105/249 (42%), Gaps = 14/249 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANIS--PSIVTYNTLISVFGRLLLVDHMEAAF 249
+YN LL + +++ L + S P++V+Y T+I+ F VD F
Sbjct: 167 SYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLF 226
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
E+ D + PNV TY +I G A + + E ++Q M V PD +TY L+ GY
Sbjct: 227 LEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSI 286
Query: 310 GNLPRMEKIYELVKHHV---DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
G + ++ E + H D + + +C +C ++ + K +
Sbjct: 287 GKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRC------REARFFFDSMIRKGIK 340
Query: 367 PWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
P + + +LI YA + L EM +N E+ S I I ++Y + +D+ +
Sbjct: 341 PNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDH-HIFNIIFTAYAKKAMIDEAMH 399
Query: 425 FVKRAESAG 433
+ + G
Sbjct: 400 IFNKMKQQG 408
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 36/160 (22%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N + AY + D+ +F +K++ +SP +V + LI +L VD F ++
Sbjct: 381 FNIIFTAYAKKAMIDEAMHIFNKMKQQG-LSPDVVNFGALIDALCKLGRVDDAVLKFNQM 439
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY--------------------------QM 286
+ ++PN+F +N L+ G T W K +E Y Q+
Sbjct: 440 MNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQV 499
Query: 287 MKAGPVM---------PDTNTYLLLLRGYAHSGNLPRMEK 317
MKA ++ PD +Y L+ G+ G + K
Sbjct: 500 MKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAK 539
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 66/309 (21%), Positives = 119/309 (38%), Gaps = 18/309 (5%)
Query: 206 SDKCQSLFRDLKKEANI--SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
S+ SLF + +E I +P + TY+ LI F R+ ++H A F I S N
Sbjct: 72 SELVVSLFNRMIRECTIKVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIV 131
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVM---PDTNTYLLLLRGYAHSGNLPRMEKIYE 320
N L+ G A + +I ++K P + PD +Y LL+G+ N R E+ E
Sbjct: 132 INQLLKGLCDAKRLREAMDI--LIKRMPELGCTPDVVSYNTLLKGFC---NEKRAEEALE 186
Query: 321 LVKHHVDGKEF---PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVY 377
L+ D + P + + + ++ K L + ++ +P NV+
Sbjct: 187 LLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQP--NVVTYTTV 244
Query: 378 AKEDCLEEMEKSINDAFEH---KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW 434
C ++ F+ K C++ Y ++ ++ + G
Sbjct: 245 IDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGL 304
Query: 435 RLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQ 494
+ Y S + + R E M I + + I+ + YAT G +++
Sbjct: 305 KPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHD 364
Query: 495 VLGLMCKNG 503
+L LM +NG
Sbjct: 365 LLNLMVENG 373
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Query: 192 TYNALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
+Y L+G + G + + +SL D+ + P TYNTL+ + R +D F+
Sbjct: 520 SYTTLIGGHCLVGRIDEAAKSL--DVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFR 577
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+ + ++P V TY+ ++ G T + + +E+Y M + Y ++L G + +
Sbjct: 578 EMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNN 637
Query: 311 NLPRMEKIYE 320
+ K+++
Sbjct: 638 CVDEAFKLFQ 647
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 10/150 (6%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A + + E N+ ++ + +N +L G K Q L DL + P +++Y TLI
Sbjct: 467 AKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLI-DLMERVGTRPDVISYTTLI 525
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY----QMMKA 289
+ +D + + L P+ +TYN L+ GY A G++++ Y +M++
Sbjct: 526 GGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRA---GRIDDAYGVFREMLRN 582
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
G + P TY +L G + +++Y
Sbjct: 583 G-ITPGVVTYSTILHGLFTTRRFSEAKELY 611
>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
nagariensis]
gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
nagariensis]
Length = 961
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 4/143 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY AL+ AY G +K +FRD+ + +++TY++LIS + + F +
Sbjct: 418 TYTALISAYGKKGQVEKALEIFRDMIRRG-CERNVITYSSLISACEKAGRWEMALELFSK 476
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ N PNV T+N LIA W K E+++ M+ PD+ TY L+ Y G
Sbjct: 477 MHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQ 536
Query: 312 LPRMEKIYELVKH---HVDGKEF 331
R K +E ++ H D F
Sbjct: 537 WRRALKAFEQMQTQGCHPDAAVF 559
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 7/207 (3%)
Query: 119 NGYAFVELMKQLGSRPRL--ALEVLNWRRR---QAGYGTPMTKEEYTKGIKFAGRINNVD 173
+ A L+K+L + L A+E+ +W R + YT I G +
Sbjct: 234 DSSAMAALLKELAKQGYLKRAVEIFDWLRNLEPSHELSSLCDLYTYTTMISQCGSHQQLR 293
Query: 174 LAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
A +L AE ++ + + TY+AL+ + D Q +++ + +E SP++VTYN L
Sbjct: 294 RALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEG-CSPNLVTYNIL 352
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I V+ + + ++ + V TYN +I+ + + ++Y+ M A V
Sbjct: 353 IDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGV 412
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIY 319
P TY L+ Y G + + +I+
Sbjct: 413 KPSATTYTALISAYGKKGQVEKALEIF 439
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 5/191 (2%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTI 190
+P AL+V + G + YT I G+ V+ A ++F + + + +
Sbjct: 395 GQPEQALKVY---EKMLAAGVKPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNV 451
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TY++L+ A G + LF + KE N P++VT+N+LI+ + F+
Sbjct: 452 ITYSSLISACEKAGRWEMALELFSKMHKE-NCKPNVVTFNSLIAACSHGGHWEKASELFE 510
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+++ P+ TY LI Y W + + ++ M+ PD + L+ SG
Sbjct: 511 QMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQTQGCHPDAAVFNSLMEVLWQSG 570
Query: 311 NLPRMEKIYEL 321
L K +L
Sbjct: 571 VLLAQSKALQL 581
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 74/167 (44%), Gaps = 8/167 (4%)
Query: 185 KHLKTIGTYNALLGAYMYNGLSDKC---QSLFRDLK-----KEANISPSIVTYNTLISVF 236
++L+ ++L Y Y + +C Q L R L+ + I ++ TY+ L++V
Sbjct: 262 RNLEPSHELSSLCDLYTYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVC 321
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
+ +D + ++++ + SPN+ TYN LI Y+ W + ++ ++ + +
Sbjct: 322 IKANELDLAQDVYKQMLEEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEV 381
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
TY ++ SG + K+YE + A+I AY K
Sbjct: 382 RTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGK 428
>gi|255573975|ref|XP_002527905.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532680|gb|EEF34462.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 490
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 90/374 (24%), Positives = 158/374 (42%), Gaps = 53/374 (14%)
Query: 160 TKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219
T+GI A I +DL E + HL TY ALL Y ++++ ++L +K E
Sbjct: 103 TRGIP-AAEIFFIDLP-----ETSKNHL----TYGALLNCYCNQLMTEEAEALMEKMK-E 151
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN-YLIAGYMTAWMWG 278
N+ S ++YN+L++++ ++ + + QE+K ++ P+ +TYN ++ A + G
Sbjct: 152 LNLGLSSMSYNSLMTLYTKIGQPERIPGIIQEMKSDSIMPDSYTYNVWMRALAAVNDISG 211
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK-IYELVKH--HVDGKEFPLI- 334
I +M + G V D TY L Y + + EK + EL K H D F +
Sbjct: 212 AERVIEEMKRDGRVAADWTTYSNLASIYVDAQLFEKAEKTLKELEKRNVHRDHSAFQFLI 271
Query: 335 ----------------RAMICAYSKCSVTDRIKKIEALMRL--IP--EKEYRPW------ 368
R++ A+ K S + I+ L+ L +P EK +R W
Sbjct: 272 TLYGRIGNLHELYRIWRSLRLAFPKTSNISYLNMIQVLVNLKDLPGAEKCFREWESNCSG 331
Query: 369 ----LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN----AVD 420
+ +LI+ YAK+ LE+ E+ A + + + YF +V+
Sbjct: 332 YDIRVANVLIKAYAKKGLLEKAEELKERAI-GRGAKPNAKTWEIFSDYYFENGDIKLSVE 390
Query: 421 KLANFVKRAESAG--WRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWI 478
LAN + + G W + S M + Q+ V+ E ++ ++ D F
Sbjct: 391 CLANAISKGRGDGQKWIPSPEVVASFMAHFEQQKDVDGAEGFIEILKKATDDVEANVFES 450
Query: 479 MYYAYATCGQRRKV 492
+ YA G+ +V
Sbjct: 451 LIRTYAAAGRTSQV 464
>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
Length = 648
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ + + +F DL P IVTY+ LI+ + + VD F+E
Sbjct: 381 TYNSLIDGFCKENCLHEANQMF-DLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE 439
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
I L PN TYN L+ G+ + +E++Q M + V P TY +LL G +G
Sbjct: 440 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE 499
Query: 312 LPRMEKIYE 320
L + +I+E
Sbjct: 500 LNKALEIFE 508
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 115/269 (42%), Gaps = 23/269 (8%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLAL---------------EVLNWRRRQAGYGTPM 154
G CL R S A V+ M ++ RP L E L R YG
Sbjct: 178 GFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQP 237
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLF 213
+ Y + + N LA DLF + +++K ++ Y+ ++ + +G D SLF
Sbjct: 238 DEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLF 297
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+++ + I +VTY++LI D +E+ N+ P+V T++ LI ++
Sbjct: 298 NEMEMKG-IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 356
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
+ +E+Y M + PDT TY L+ G+ L ++++L+ G E +
Sbjct: 357 EGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSK--GCEPDI 414
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPE 362
+ I S C + K+++ MRL E
Sbjct: 415 VTYSILINSYC----KAKRVDDGMRLFRE 439
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 6/158 (3%)
Query: 166 AGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
+G++N A +LF E ++ + ++ TY LL NG +K +F ++K + ++
Sbjct: 462 SGKLN---AAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQK-SRMTL 517
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
I YN +I VD + F + D + P+V TYN +I G + + ++
Sbjct: 518 GIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLF 577
Query: 285 QMMKAGPVMPDTNTYLLLLRGY-AHSGNLPRMEKIYEL 321
+ MK PD TY +L+R + SG + +E I E+
Sbjct: 578 RKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEM 615
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TY+ L+ +Y D LFR++ + I P+ +TYNTL+ F + ++ + F
Sbjct: 414 IVTYSILINSYCKAKRVDDGMRLFREISSKGLI-PNTITYNTLVLGFCQSGKLNAAKELF 472
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
QE+ + P+V TY L+ G K EI++ M+ + Y +++ G ++
Sbjct: 473 QEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNA 532
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 4/155 (2%)
Query: 172 VDLAADLFAEAANKHL--KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
VD LF E ++K L TI TYN L+ + +G + + LF+++ + PS+VTY
Sbjct: 430 VDDGMRLFREISSKGLIPNTI-TYNTLVLGFCQSGKLNAAKELFQEMVSRG-VPPSVVTY 487
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
L+ ++ F++++ S ++ + YN +I G A ++ +
Sbjct: 488 GILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSD 547
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
V PD TY +++ G G+L + ++ +K
Sbjct: 548 KGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 582
>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
Length = 905
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYNAL+ AY G DK +F+++ + S++TY++LIS + + F E
Sbjct: 352 TYNALISAYGKAGQLDKVMEVFQEMVHKG-CERSVITYSSLISACEKAGQWELALELFNE 410
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ PN TYN LI W K E+++ M+ G PD T+ L+ Y G
Sbjct: 411 MAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKGGCTPDVVTFTALISSYEKGGQ 470
Query: 312 LPRMEKIYELVK 323
R YE ++
Sbjct: 471 WRRALGAYEQMR 482
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 1/168 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ A G + ++++ + E SP+ TYN LIS +G+ +D + FQE
Sbjct: 317 TYNTLIIACNMCGQPREAMAVYKRMLDEG-YSPNATTYNALISAYGKAGQLDKVMEVFQE 375
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +V TY+ LI+ A W E++ M +P+T TY L+ A
Sbjct: 376 MVHKGCERSVITYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQ 435
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359
+ +++E ++ + A+I +Y K R MRL
Sbjct: 436 WEKASEVFEQMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRL 483
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 87/201 (43%), Gaps = 5/201 (2%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTI 190
+PR A+ V R GY T Y I G+ +D ++F E +K +++
Sbjct: 329 GQPREAMAVYK-RMLDEGYSPNATT--YNALISAYGKAGQLDKVMEVFQEMVHKGCERSV 385
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TY++L+ A G + LF ++ E I P+ VTYN+LI+ + + F+
Sbjct: 386 ITYSSLISACEKAGQWELALELFNEMAGEGCI-PNTVTYNSLITACAQGAQWEKASEVFE 444
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+++ +P+V T+ LI+ Y W + Y+ M+ PD + ++ +G
Sbjct: 445 QMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAIIDTLWETG 504
Query: 311 NLPRMEKIYELVKHHVDGKEF 331
+ K L + V+ F
Sbjct: 505 VIWAQRKALALFQQAVEDGHF 525
>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22470, mitochondrial; Flags: Precursor
gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ + + +F DL P IVTY+ LI+ + + VD F+E
Sbjct: 352 TYNSLIDGFCKENCLHEANQMF-DLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFRE 410
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
I L PN TYN L+ G+ + +E++Q M + V P TY +LL G +G
Sbjct: 411 ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE 470
Query: 312 LPRMEKIYE 320
L + +I+E
Sbjct: 471 LNKALEIFE 479
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 115/269 (42%), Gaps = 23/269 (8%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLAL---------------EVLNWRRRQAGYGTPM 154
G CL R S A V+ M ++ RP L E L R YG
Sbjct: 149 GFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQP 208
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLF 213
+ Y + + N LA DLF + +++K ++ Y+ ++ + +G D SLF
Sbjct: 209 DEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLF 268
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+++ + I +VTY++LI D +E+ N+ P+V T++ LI ++
Sbjct: 269 NEMEMKG-IKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 327
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
+ +E+Y M + PDT TY L+ G+ L ++++L+ G E +
Sbjct: 328 EGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSK--GCEPDI 385
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPE 362
+ I S C + K+++ MRL E
Sbjct: 386 VTYSILINSYC----KAKRVDDGMRLFRE 410
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 6/158 (3%)
Query: 166 AGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
+G++N A +LF E ++ + ++ TY LL NG +K +F ++K + ++
Sbjct: 433 SGKLNA---AKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQK-SRMTL 488
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
I YN +I VD + F + D + P+V TYN +I G + + ++
Sbjct: 489 GIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLF 548
Query: 285 QMMKAGPVMPDTNTYLLLLRGY-AHSGNLPRMEKIYEL 321
+ MK PD TY +L+R + SG + +E I E+
Sbjct: 549 RKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEM 586
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TY+ L+ +Y D LFR++ + I P+ +TYNTL+ F + ++ + F
Sbjct: 385 IVTYSILINSYCKAKRVDDGMRLFREISSKGLI-PNTITYNTLVLGFCQSGKLNAAKELF 443
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
QE+ + P+V TY L+ G K EI++ M+ + Y +++ G ++
Sbjct: 444 QEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNA 503
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 25/199 (12%)
Query: 172 VDLAADLFAEAANKHL--KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
VD LF E ++K L TI TYN L+ + +G + + LF+++ + PS+VTY
Sbjct: 401 VDDGMRLFREISSKGLIPNTI-TYNTLVLGFCQSGKLNAAKELFQEMVSRG-VPPSVVTY 458
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
L+ ++ F++++ S ++ + YN +I G A ++ +
Sbjct: 459 GILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSD 518
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE----------------LVKHHVDG----K 329
V PD TY +++ G G+L + ++ L++ H+ G
Sbjct: 519 KGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLIS 578
Query: 330 EFPLIRAM-ICAYSKCSVT 347
LI M +C +S S T
Sbjct: 579 SVELIEEMKVCGFSADSST 597
>gi|224131534|ref|XP_002321108.1| predicted protein [Populus trichocarpa]
gi|222861881|gb|EEE99423.1| predicted protein [Populus trichocarpa]
Length = 419
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 2/168 (1%)
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQ 210
T + + Y K I G ++ A F E + L ++ YN+++ Y NG D
Sbjct: 56 TRINEFNYEKIIGLLGEEGLMEDAVTAFMEMKSFGLCLSLEVYNSIIHGYARNGKFDDAL 115
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+ + E N+SP TY+ LI +G + D M ++++ SP+ +TYN LI
Sbjct: 116 -FYLNQMNEMNLSPESDTYDGLIEAYGTYRMYDEMAMCLKKMELDGCSPDRYTYNLLIQK 174
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
+ + ++E +YQ M+ + ++T + +L YA+ G + +MEKI
Sbjct: 175 FAQGGLLTRMERVYQSMRTKRMKLQSSTLISMLEAYANFGIVEKMEKI 222
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 1/162 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y ++G GL + + F ++K + S+ YN++I + R D +
Sbjct: 62 NYEKIIGLLGEEGLMEDAVTAFMEMKS-FGLCLSLEVYNSIIHGYARNGKFDDALFYLNQ 120
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + NLSP TY+ LI Y T M+ ++ + M+ PD TY LL++ +A G
Sbjct: 121 MNEMNLSPESDTYDGLIEAYGTYRMYDEMAMCLKKMELDGCSPDRYTYNLLIQKFAQGGL 180
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
L RME++Y+ ++ + + +M+ AY+ + ++++KI
Sbjct: 181 LTRMERVYQSMRTKRMKLQSSTLISMLEAYANFGIVEKMEKI 222
>gi|255580313|ref|XP_002530985.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529437|gb|EEF31397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 753
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 105/231 (45%), Gaps = 8/231 (3%)
Query: 121 YAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
Y FV L++ G + + E + + G + + Y K R +A +F
Sbjct: 178 YMFVVLIESYG-KAGIVQEAVKIFNKMNELGVERSIKSYDALFKVILRRGRYMMAKRVFN 236
Query: 181 EAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
+ N ++ T TYN +L + + + + D+K ISP +VTYNT+I+ F R
Sbjct: 237 KMLNDGIQPTRHTYNIMLWGFFLSLRLETAMRFYDDMKNRG-ISPDVVTYNTMINGFYRF 295
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
++ E F E+K N++P V +Y +I GY+ + + MK+ + P+ +TY
Sbjct: 296 KKMEEAEKLFVEMKGKNIAPTVISYTTMIKGYVAVDRVDDGLRLLEEMKSFNIKPNVHTY 355
Query: 300 LLLLRGYAHSGNLPRMEKI-YELVKHHVDGKEFPL-IRAMICAYSKCSVTD 348
LL G + + + I E+V H+ K+ + +R + C +C D
Sbjct: 356 STLLPGLCDAWKMTEAKDILIEMVARHLAPKDNSIFLRLLSC---QCKAGD 403
>gi|422294672|gb|EKU21972.1| putative udp-glucosyltransferase, partial [Nannochloropsis gaditana
CCMP526]
Length = 535
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 69/320 (21%), Positives = 122/320 (38%), Gaps = 47/320 (14%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRD-LKKEAN---------ISPSIVTYNTLISVF 236
L + TY L+ AY G ++ +++ R L+ E + P+++TY TL++ +
Sbjct: 239 LPDVVTYTTLMHAYAGRGDTEGAEAVLRRMLEGEGGRVREEEVLRVLPNVMTYTTLMTAY 298
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
V+ EA + ++++ ++PNV TY L+ Y E + + M + V P+
Sbjct: 299 AAGGDVEGSEAVLERMEEACIAPNVMTYTVLMTAYTLRGDVKGAEGVLRRMISAYVAPNA 358
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
NTY LL Y +GN E++ + ++EA
Sbjct: 359 NTYTTLLHAYTVNGNAAGAEEV-------------------------------LARMEAA 387
Query: 357 MRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC 416
L + L+ VYA +E K + E T ++++Y
Sbjct: 388 GVLPTALTF-----ATLMTVYAARGEVESA-KGVLARMEAAGVGPTAMAFDTLLNAYVVA 441
Query: 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476
V ++R E+ + Y++ M YA + V E VL M + + T
Sbjct: 442 GDVGGAEQVLRRREAEAYPDFPLTYNTLMNGYADKGDVAGAEGVLARMRAKGVGPDETTL 501
Query: 477 WIMYYAYATCGQRRKVNQVL 496
+ +AYA G VL
Sbjct: 502 STLLHAYAEAGDPLGAEAVL 521
>gi|30688764|ref|NP_850356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75158748|sp|Q8RWS8.1|PP199_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g41720; AltName: Full=Protein EMBRYO DEFECTIVE 2654
gi|20268762|gb|AAM14084.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|21436141|gb|AAM51317.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330254931|gb|AEC10025.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/340 (21%), Positives = 145/340 (42%), Gaps = 18/340 (5%)
Query: 175 AADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
A DLF K + + T+ +++ Y G + C+++F + E + P+IV+YN
Sbjct: 302 ALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEG-LKPNIVSYNA 360
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L+ + + + +IK + + P+V +Y L+ Y + GK +E++ MM+
Sbjct: 361 LMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKER 420
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351
P+ TY L+ Y +G L +I+ ++ DG + P + ++ + CS + +
Sbjct: 421 RKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQ--DGIK-PNVVSVCTLLAACSRSKKKV 477
Query: 352 KIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSIN--DAFEHKTSVTTVRI 405
++ ++ + LN I Y E+EK+I + K
Sbjct: 478 NVDTVLSAAQSRGIN--LNTAAYNSAIGSYINA---AELEKAIALYQSMRKKKVKADSVT 532
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
++S R + + +++K E L + +Y S + Y+ Q +V E ES+ +M+
Sbjct: 533 FTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMK 592
Query: 466 NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
+ + M +AY + K ++ M NG +
Sbjct: 593 MAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIE 632
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 77/166 (46%), Gaps = 11/166 (6%)
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
Y++++ + + V E+ F ++K + P+V Y ++ Y + WGK E++ M
Sbjct: 567 VYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEM 626
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA-YSKCSV 346
+A + PD+ L+R + G + + +L++ KE P A+ +S C+
Sbjct: 627 EANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMRE----KEIPFTGAVFFEIFSACNT 682
Query: 347 TDRIKKIEALMRLIPEKEYRPWLNVLL----IRVYAKEDCLEEMEK 388
K+ L++++ Y P L++ L + ++ K +E M K
Sbjct: 683 LQEWKRAIDLIQMM--DPYLPSLSIGLTNQMLHLFGKSGKVEAMMK 726
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 110/303 (36%), Gaps = 41/303 (13%)
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G + C ++F+ +K + N YN +I + R VD F E++ + P+ T
Sbjct: 121 GCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAET 180
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
Y+ LI + A W + M + P +TY L+ SGN + E+ K
Sbjct: 181 YDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNW---REALEVCK 237
Query: 324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL 383
D P + S + K + L+ + RP I +Y CL
Sbjct: 238 KMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIY----CL 293
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS---L 440
++ +S ++ MR KRAE CR
Sbjct: 294 SKLGQS-------SQALDLFNSMR------------------EKRAE------CRPDVVT 322
Query: 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
+ S M +Y+ + +E +V + M + + ++ + AYA G VLG +
Sbjct: 323 FTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIK 382
Query: 501 KNG 503
+NG
Sbjct: 383 QNG 385
>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 5/194 (2%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R V A L H+ T T+N L+ G DK S LK + P++
Sbjct: 259 RKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKL-IGLCPTL 317
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTYN LIS F ++ + +E++D +SP+ TY L+ ++ + K E++ +
Sbjct: 318 VTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHL 377
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHVDGKEFPLIRAMICAYSK-C 344
MK ++PD +TY +L+ G GN+ K+Y+ +V+ H+ + + MI Y K C
Sbjct: 378 MKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDV-IYNTMINGYCKEC 436
Query: 345 SVTDRIKKIEALMR 358
+ +K +E +++
Sbjct: 437 NSYKALKFLEEMVK 450
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 159 YTKGIKFAGRINNVDLAADLFAE------AANKHLKTIGTYNALLGAYMYNGLSDKCQSL 212
YT I+ R ++D A +F+ AAN+++ TI ++ + G L
Sbjct: 145 YTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTI-----MINGFFKKGYKKDGFEL 199
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
++ +K + P++ TYN+LI+ + R + F EI ++ N TYN LI G
Sbjct: 200 YQKMKL-VGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLC 258
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
K E + + MK + P T T+ +L+ G ++G L +
Sbjct: 259 RKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDK 300
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ Y +G +F ++ K ++ + VTYN LI R V E +
Sbjct: 214 TYNSLITEYCRDGKLSLAFKVFDEISKRG-VACNAVTYNILIGGLCRKGQVSKAEGLLER 272
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K ++++P T+N L+ G K + +K + P TY +L+ G++ GN
Sbjct: 273 MKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGN 332
Query: 312 LPRMEKIYELVKHHVD 327
+ ELV+ D
Sbjct: 333 ---SSVVSELVREMED 345
>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
Length = 1429
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 116/276 (42%), Gaps = 6/276 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN LL A + + +F D++ P + TYN +ISV+GR L E F E
Sbjct: 299 TYNTLLSACSRDSNLEGAVKVFEDMEAH-RCQPDLWTYNAMISVYGRCGLAAEAERLFIE 357
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ SP+ TYN L+ + KV+E+YQ M+ D TY ++ Y G
Sbjct: 358 LELKGFSPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQ 417
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
L ++Y+ +K + G+ I + S +R + ALM + + +P L
Sbjct: 418 LDLALQLYKDMK-GLSGRNPDAITYTVLIDS-LGKANRSVEAAALMSEMLDVGIKPTLQT 475
Query: 372 --LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
LI YAK EE E + + T + ++ R N K +
Sbjct: 476 YSALICGYAKAGKREEAEDTFSCMLRSGTKPDNL-AYSVMLDVLLRGNETRKAWVLYRDM 534
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
S G SLY ++ + R ++++ +++ME
Sbjct: 535 ISDGHTPSHSLYELMILGLMKENRSDDVQKTIRDME 570
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 83/388 (21%), Positives = 150/388 (38%), Gaps = 48/388 (12%)
Query: 121 YAFVELMKQLGSRP-RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF 179
Y FV +K +G + ALEV W + + G+ GR N LA ++F
Sbjct: 159 YCFV--VKSVGQESWQRALEVFEWLNLRHWHSPNARMVAAILGV--LGRWNQESLAVEIF 214
Query: 180 AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
A + YNA++G Y +G K Q L D ++ P ++++NTLI+
Sbjct: 215 TRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELL-DAMRQRGCVPDLISFNTLINA---- 269
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
+K L+PN+ V E+ M++ + PD TY
Sbjct: 270 -----------RLKSGGLTPNL------------------VVELLDMVRNSGLRPDAITY 300
Query: 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359
LL + NL K++E ++ H + AMI Y +C + +++ + L
Sbjct: 301 NTLLSACSRDSNLEGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFIELEL 360
Query: 360 IPEKEYRP---WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC 416
K + P N LL +A+E E++ K + + I+ Y +
Sbjct: 361 ---KGFSPDAVTYNSLLY-AFARERNTEKV-KEVYQQMQKMGFGKDEMTYNTIIHMYGKQ 415
Query: 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMV-MYASQRRVEEMESVLKEMENYKIDCSKKT 475
+D K + R ++ ++ ++ R E +++ EM + I + +T
Sbjct: 416 GQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRSVEAAALMSEMLDVGIKPTLQT 475
Query: 476 FWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ + YA G+R + M ++G
Sbjct: 476 YSALICGYAKAGKREEAEDTFSCMLRSG 503
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 74/359 (20%), Positives = 151/359 (42%), Gaps = 52/359 (14%)
Query: 180 AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
AE H Y ++ AY L K +S+ +L++ +P + T+N+L+S +
Sbjct: 742 AETKGFHFACSPMYTDIIEAYGKLKLWQKAESVVGNLRQSGR-TPDLKTWNSLMSAYAEC 800
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP---DT 296
+ A F + SP V + N L+ G++EE+Y +++ M
Sbjct: 801 GCYERARAIFNTMMRDGPSPTVESINKLLHALCVD---GRLEELYVVVEELQDMGFKISK 857
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
++ LL+L +A +GN+ + KIY +K L R MI K R++ E +
Sbjct: 858 SSILLMLDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMIELLCK---GKRVRDAEIM 914
Query: 357 MRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSIN-------DAFE-HKTSVTTVRIM 406
+ + E ++ L + ++++Y +E+ +K++ E +T+ T+ IM
Sbjct: 915 VSEMEEANFKVELAIWNSMLKMYT---VIEDYKKTVQVYQRIKESGLEPDETTYNTLIIM 971
Query: 407 RC-----------------------------IVSSYFRCNAVDKLANFVKRAESAGWRLC 437
C ++S++ + +++ + S G +L
Sbjct: 972 YCRDRRPEEGYSLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLD 1031
Query: 438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
RS YH+ M + + E +L+ M+N I+ + T ++ +Y++ G ++ +VL
Sbjct: 1032 RSFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVL 1090
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 20/228 (8%)
Query: 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDL 216
E+Y K ++ RI L D TYN L+ Y + ++ SL + +
Sbjct: 941 EDYKKTVQVYQRIKESGLEPDE------------TTYNTLIIMYCRDRRPEEGYSLMQQM 988
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
+ + P + TY +LIS FG+ ++ E F+E+ L + Y+ ++ +
Sbjct: 989 RN-LGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGS 1047
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH-HVDGKEFPLIR 335
K E++ QMMK + P T LL+ Y+ SGN EK+ +K+ V+ P
Sbjct: 1048 DSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKNTEVELTTLP-YS 1106
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEK---EYRPWLNVLLIRVYAKE 380
++I AY + D IE L+ + E ++R W + ++KE
Sbjct: 1107 SVIDAYLRSK--DYKSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKE 1152
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 82/200 (41%), Gaps = 24/200 (12%)
Query: 112 CLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN 171
C RR GY+ ++ M+ LG P+L + Y I G+
Sbjct: 973 CRDRRPEEGYSLMQQMRNLGLDPKL--------------------DTYKSLISAFGKQKC 1012
Query: 172 VDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
++ A LF E +K LK + Y+ ++ +G K + L + + K A I P++ T +
Sbjct: 1013 LEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQ-MMKNAGIEPTLATMH 1071
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW-GKVEEIYQMMKA 289
L+ + E +K++ + Y+ +I Y+ + + +E + +M K
Sbjct: 1072 LLMVSYSSSGNPQEAEKVLSNLKNTEVELTTLPYSSVIDAYLRSKDYKSGIERLLEMKKE 1131
Query: 290 GPVMPDTNTYLLLLRGYAHS 309
G + PD + +R + S
Sbjct: 1132 G-LEPDHRIWTCFVRAASFS 1150
>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
Length = 500
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 92/231 (39%), Gaps = 22/231 (9%)
Query: 112 CLFRRHSNGYAFVELMKQLGSRPRL------------------ALEVLNWRRRQAGYGTP 153
C RR G E M+ G P + ALEV G
Sbjct: 231 CKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEA---GCK 287
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSL 212
K YT I R V A +LF + + YN+L+ Y G D+ + L
Sbjct: 288 PNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKL 347
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
+R++ A + P+IVT+NTLI F +L + E+ L+ + TY LIAG
Sbjct: 348 YREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLS 407
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
A + E+Y+ M+ + D + + + G +GN+ + ++E +
Sbjct: 408 RATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATR 458
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 114/265 (43%), Gaps = 11/265 (4%)
Query: 93 LANVDDLDKVFRVLDEKGSCLFRRHSNGY-AFVELMKQLGSRPRL--ALEVLNWRRRQAG 149
LA + LD+ ++L E + R + A+ L++ L R+ A + + R
Sbjct: 90 LAKIGKLDESLKILSEM---VMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGH 146
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDK 208
+ + E G+ AG++ + A++ F + + + YN LL +G ++
Sbjct: 147 HPDRLMFYELILGLCQAGKVKD---ASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQ 203
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
+LF ++K + SP +VTYNTL+ + V+ F+ ++ + PNV T++ LI
Sbjct: 204 ANTLFAEMKSHS-CSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLI 262
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
G K E++ M P+ TY L+ G + + + +++E +
Sbjct: 263 HGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIP 322
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKI 353
+ ++I Y K D +K+
Sbjct: 323 PDAVAYNSLIAGYCKRGSMDEAEKL 347
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 2/151 (1%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
++ A LFAE + + TYN LL A ++ LF ++ A P+++T
Sbjct: 199 GQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRA-AGYVPNVIT 257
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
++TLI R ++ F + ++ PN +TY LI+G A + E+++ M
Sbjct: 258 FSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMT 317
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ PD Y L+ GY G++ EK+Y
Sbjct: 318 QACIPPDAVAYNSLIAGYCKRGSMDEAEKLY 348
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 50/101 (49%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ NI+ ++ TY+++I + + +E+ + +P+VF +N ++ G+ +
Sbjct: 2 RDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNM 61
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
K E+YQ M PD +Y +L+ G A G L KI
Sbjct: 62 EKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKI 102
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 11/80 (13%)
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY----QMMKAGPVMPDTNTYLLLLRGYA 307
++D N++ NVFTY+ +I + K EE Y +MM AG PD + +++G+A
Sbjct: 1 MRDKNIAANVFTYSSIIKSLVK---EAKPEESYKVLEEMMAAG-CNPDVFAFNGVMQGFA 56
Query: 308 HSGNLPRMEKIYELVKHHVD 327
S N MEK E+ +H V+
Sbjct: 57 RSNN---MEKAREVYQHMVE 73
>gi|387219245|gb|AFJ69331.1| putative udp-glucosyltransferase, partial [Nannochloropsis gaditana
CCMP526]
Length = 521
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/324 (21%), Positives = 123/324 (37%), Gaps = 47/324 (14%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRD-LKKEAN---------ISPSIVTYNTL 232
A L + TY L+ AY G ++ +++ R L+ E + P+++TY TL
Sbjct: 221 ARGLLPDVVTYTTLMHAYAGRGDTEGAEAVLRRMLEGEGGRVREEEVLRVLPNVMTYTTL 280
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
++ + V+ EA + ++++ ++PNV TY L+ Y E + + M + V
Sbjct: 281 MTAYAAGGDVEGSEAVLERMEEACIAPNVMTYTVLMTAYTLRGDVKGAEGVLRRMISAYV 340
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352
P+ NTY LL Y +GN E++ + +
Sbjct: 341 APNANTYTTLLHAYTVNGNAAGAEEV-------------------------------LAR 369
Query: 353 IEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS 412
+EA L + L+ VYA +E K + E T ++++
Sbjct: 370 MEAAGVLPTALTF-----ATLMTVYAARGEVESA-KGVLARMEAAGVGPTAMAFDTLLNA 423
Query: 413 YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS 472
Y V ++R E+ + Y++ M YA + V E VL M +
Sbjct: 424 YVVAGDVGGAEQVLRRREAEAYPDFPLTYNTLMNGYADKGDVAGAEGVLARMRAKGVGPD 483
Query: 473 KKTFWIMYYAYATCGQRRKVNQVL 496
+ T + +AYA G VL
Sbjct: 484 ETTLSTLLHAYAEAGDPLGAEAVL 507
>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
Length = 648
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 52/239 (21%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ +YN L+ + G DK LF + E ++SP +VTYN+LI + + E
Sbjct: 64 VCSYNTLIDGFSKEGEVDKAYELFYKMI-EQSVSPDVVTYNSLIDGLCKTKEMVKSERVL 122
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP---DTNTYLLLLRGY 306
+++ D+ + PN TYN LI GY TA MW + +++ M + ++P + N++
Sbjct: 123 EQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSF------- 175
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
I+ L +H +RIK+ + + + K +
Sbjct: 176 -----------IHALCRH-----------------------NRIKEAKDIFDSMVLKGPK 201
Query: 367 PWLNVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
P N++ L+ YA E C M +N K V R ++++Y RC +DK
Sbjct: 202 P--NIISYSTLLHGYAAEGCFANMNSLVN-LMVSKGIVPNHRFFNILINAYARCGMMDK 257
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 113/291 (38%), Gaps = 8/291 (2%)
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
+ ++++ + P LAL V R + G G + Y I + VD A +LF +
Sbjct: 33 SLIDVLPAECTGPELALAVFG-RLLRTGLGPDVCS--YNTLIDGFSKEGEVDKAYELFYK 89
Query: 182 AANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
+ + + TYN+L+ K + + + +A I P+ TYN+LI +
Sbjct: 90 MIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMV-DAGIRPNNKTYNSLIYGYSTAG 148
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
+ F+E+ S L P V N I + ++I+ M P+ +Y
Sbjct: 149 MWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYS 208
Query: 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR-- 358
LL GYA G M + L+ +I AY++C + D+ I M+
Sbjct: 209 TLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNK 268
Query: 359 -LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC 408
+IP+ + L R+ +D L + ++ +V I C
Sbjct: 269 GMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGC 319
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/328 (19%), Positives = 133/328 (40%), Gaps = 26/328 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ Y G+ + +F+++ I P +V N+ I R + + F
Sbjct: 136 TYNSLIYGYSTAGMWKESVRVFKEMSSSGLI-PCVVNCNSFIHALCRHNRIKEAKDIFDS 194
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ PN+ +Y+ L+ GY + + + +M + ++P+ + +L+ YA G
Sbjct: 195 MVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGM 254
Query: 312 LPRMEKIYELVKHH---VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL-IPEKE--Y 365
+ + I+E +++ D F + + +C + + D + K ++ + +P E Y
Sbjct: 255 MDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGR--LDDALHKFNHMVDIGVPPSEAVY 312
Query: 366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
R LI+ L + ++ I++ V+ I+++ F+ V + +
Sbjct: 313 R-----CLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSSIINNLFKEGRVAEGKDI 367
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEM--------ESVLKEMENY---KIDCSKK 474
+ G R ++S M Y +EE + L + Y + +KK
Sbjct: 368 MDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEALHYLMLWHQLALNRIVTYMARRTTAAKK 427
Query: 475 TFWIMYYAYATCGQRRKVNQVLGLMCKN 502
F M + T + VLG +C+N
Sbjct: 428 MFHEMIESGTTV-SIQTYGVVLGGLCRN 454
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 22/199 (11%)
Query: 113 LFR--RHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEE------------ 158
LF+ R + G ++LM Q G RP V+ + GY EE
Sbjct: 355 LFKEGRVAEGKDIMDLMVQTGQRPN----VVTFNSLMEGYCLVGNMEEALHYLMLWHQLA 410
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
+ + + R A +F E +I TY +LG N +D+ L L
Sbjct: 411 LNRIVTYMAR--RTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLF 468
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
N+ I+T+N +IS ++ + F I L P V TYN +I+ + +
Sbjct: 469 A-MNVKFDIITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNLIKEESY 527
Query: 278 GKVEEIYQMMKAGPVMPDT 296
+ + ++ ++ PD+
Sbjct: 528 EEADNLFISVEKSGRAPDS 546
>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 5/194 (2%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R V A L H+ T T+N L+ G DK S LK + P++
Sbjct: 259 RKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKL-IGLCPTL 317
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTYN LIS F ++ + +E++D +SP+ TY L+ ++ + K E++ +
Sbjct: 318 VTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHL 377
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHVDGKEFPLIRAMICAYSK-C 344
MK ++PD +TY +L+ G GN+ K+Y+ +V+ H+ + + MI Y K C
Sbjct: 378 MKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDV-IYNTMINGYCKEC 436
Query: 345 SVTDRIKKIEALMR 358
+ +K +E +++
Sbjct: 437 NSYKALKFLEEMVK 450
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 159 YTKGIKFAGRINNVDLAADLFAE------AANKHLKTIGTYNALLGAYMYNGLSDKCQSL 212
YT I+ R ++D A +F+ AAN+++ TI ++ + G L
Sbjct: 145 YTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTI-----MINGFFKKGYKKDGFEL 199
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
++ +K + P++ TYN+LI+ + R + F EI ++ N TYN LI G
Sbjct: 200 YQKMKL-VGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLC 258
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
K E + + MK + P T T+ +L+ G ++G L +
Sbjct: 259 RKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDK 300
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ Y +G +F ++ K ++ + VTYN LI R V E +
Sbjct: 214 TYNSLITEYCRDGKLSLAFKVFDEISKRG-VACNAVTYNILIGGLCRKGQVSKAEGLLER 272
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K ++++P T+N L+ G K + +K + P TY +L+ G++ GN
Sbjct: 273 MKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGN 332
Query: 312 LPRMEKIYELVKHHVD 327
+ ELV+ D
Sbjct: 333 ---SSVVSELVREMED 345
>gi|297820746|ref|XP_002878256.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324094|gb|EFH54515.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 582
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 98/195 (50%), Gaps = 9/195 (4%)
Query: 168 RINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+ N D A +F+ K + ++ TYN+L+ ++ N K S D + + I P +
Sbjct: 259 KAGNYDKARKVFSSMVGKGVPQSTVTYNSLM-SFETN---YKEVSKIYDQMQRSGIQPDV 314
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
V+Y LI +GR + + F+E+ D+ + P YN L+ + + M + + +++
Sbjct: 315 VSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKS 374
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR--AMICAYSKC 344
M+ + PD +Y +L Y ++ ++ EK ++ +K VDG E ++ MI Y+K
Sbjct: 375 MRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIK--VDGFEPNIVTYGTMIKGYAKA 432
Query: 345 SVTDRIKKIEALMRL 359
+ +++ ++ MRL
Sbjct: 433 NDVEKMMEVYEKMRL 447
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/330 (20%), Positives = 138/330 (41%), Gaps = 46/330 (13%)
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ AY G + + + L K + SP++++Y L+ +GR ++ EA F+ ++ S
Sbjct: 145 LITAYGKLGNFNGAERVLSVLSKMGS-SPNVISYTALMESYGRGGKCNNAEAIFRRMQSS 203
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM---KAGPVMPDTNTYLLLLRGYAHSGNL 312
P+ TY ++ ++ + + EE+++ + K P+ PD Y +++ Y +GN
Sbjct: 204 GPEPSAVTYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNY 263
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL--N 370
+ K++ + GK P ++ + S S K++ + + +P +
Sbjct: 264 DKARKVF----SSMVGKGVP--QSTVTYNSLMSFETNYKEVSKIYDQMQRSGIQPDVVSY 317
Query: 371 VLLIRVYAK----EDCLEEMEKSIN--------------DAF-------EHKTSVTTVRI 405
LLI+ Y + E+ L E+ ++ DAF + KT ++R
Sbjct: 318 ALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRR 377
Query: 406 MR---------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
R ++S+Y + ++ F KR + G+ Y + + YA VE+
Sbjct: 378 DRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTMIKGYAKANDVEK 437
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATC 486
M V ++M I ++ + A C
Sbjct: 438 MMEVYEKMRLSGIKANQTILTTIMDASGRC 467
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 111/282 (39%), Gaps = 18/282 (6%)
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
LI+ +G+L + E + SPNV +Y L+ Y E I++ M++
Sbjct: 145 LITAYGKLGNFNGAERVLSVLSKMGSSPNVISYTALMESYGRGGKCNNAEAIFRRMQSSG 204
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL------IRAMICAYSKCS 345
P TY ++L+ + E+++E + +D K+ PL MI Y K
Sbjct: 205 PEPSAVTYQIILKTFVEGDKFKEAEEVFETL---LDEKKSPLKPDQKMYHMMIYMYKKAG 261
Query: 346 VTDRIKKIEALM--RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV 403
D+ +K+ + M + +P+ V + + E +E+ K I D + V
Sbjct: 262 NYDKARKVFSSMVGKGVPQS------TVTYNSLMSFETNYKEVSK-IYDQMQRSGIQPDV 314
Query: 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463
++ +Y R ++ + + AG R Y+ + +A VE+ ++V K
Sbjct: 315 VSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKS 374
Query: 464 MENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
M +I ++ M AY + + +G++
Sbjct: 375 MRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFE 416
>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
Length = 773
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 124/269 (46%), Gaps = 10/269 (3%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
AL + + +RQ + P T+ YT I GR ++ +++F + +K + + A
Sbjct: 65 ALRLFKYMQRQQ-WCKP-TEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTA 122
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV-DHMEAAFQEIKD 254
L+ AY NG + L +KKE + P+++TYNT+++ + L + + F +++
Sbjct: 123 LINAYGRNGQYEASLHLLARMKKE-RVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRH 181
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ P++ TYN L++ + + + +++ M V+ D TY L+ +A S L R
Sbjct: 182 EGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGR 241
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--L 372
+E++ ++ + + ++I AY+ + + + + P +
Sbjct: 242 VEELLREMEDEGNSPDIAGYNSLIEAYADAG---NVHGAAGVFKQMQRGGCAPDVETYST 298
Query: 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVT 401
L+R+Y + C E++ +D E T T
Sbjct: 299 LLRIYGNQGCFEQVRSLFSDMKELSTPPT 327
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 9/186 (4%)
Query: 165 FAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANIS 223
FAG N + +L E ++ + I YN+L+ AY G +F+ +++ +
Sbjct: 233 FAGS-NQLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQMQR-GGCA 290
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P + TY+TL+ ++G + + + F ++K+ + P V TYN LI + + + +
Sbjct: 291 PDVETYSTLLRIYGNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQESINL 350
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA---MICA 340
+ M V PD TY LL G KI++ H + + P + A +I +
Sbjct: 351 FHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQ---HMLTNESTPSLEASAGLISS 407
Query: 341 YSKCSV 346
Y K ++
Sbjct: 408 YGKMAM 413
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQ 210
TP T Y I+ G + +LF + + +K TY+ALL GL+ +
Sbjct: 324 TPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAA 383
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+ + + + +PS+ LIS +G++ + ++ I+++ L P V Y+ LI G
Sbjct: 384 KIHQHMLTNES-TPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQG 442
Query: 271 YMTAWMWGKV-EEIYQMMKAGPVMP 294
Y ++ + +Y M KAG P
Sbjct: 443 YAKGGLYVEAGSTLYAMNKAGFQAP 467
>gi|255660864|gb|ACU25601.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 484
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTD-RIKKIEALMRL 359
+ I E++ ++ + + +I ++ K D + ++A++RL
Sbjct: 271 MSEARVILKEMMDKYLAPTDNSIFLRLISSHCKSGNLDAAVDVLKAMIRL 320
>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
Length = 797
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y ++ + G DK +LF ++ I P++VTY T+I + +VD E FQ+
Sbjct: 205 SYAIVINGFFTEGQVDKAYNLFLEMMDRG-IQPNVVTYTTVIDGLCKAQVVDRAEGVFQQ 263
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ D + P+ TYN LI GY++ W +V + + M A + PD TY LL ++G
Sbjct: 264 MIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNG 322
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 105/249 (42%), Gaps = 14/249 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANIS--PSIVTYNTLISVFGRLLLVDHMEAAF 249
+YN LL + +++ L + S P++V+Y +I+ F VD F
Sbjct: 167 SYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLF 226
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
E+ D + PNV TY +I G A + + E ++Q M V PD +TY L+ GY
Sbjct: 227 LEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSI 286
Query: 310 GNLPRMEKIYELVKHHV---DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
G + ++ E + H D + + +C +C ++ L + K +
Sbjct: 287 GKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRC------REARFLFDSMIRKGIK 340
Query: 367 PWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
P + + +LI YA + L EM +N E+ S I I ++Y + +D+ +
Sbjct: 341 PNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDH-HIFNIIFTAYAKKAMIDEAMH 399
Query: 425 FVKRAESAG 433
+ + G
Sbjct: 400 IFNKMKQQG 408
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
Query: 192 TYNALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
+Y L+G + G + + +SL D+ + P TYNTL+ + R +D F+
Sbjct: 520 SYTTLIGGHCLVGRIDEAAKSL--DVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFR 577
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+ + ++P V TY+ ++ G T + + +E+Y M + Y ++L G + +
Sbjct: 578 EMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNN 637
Query: 311 NLPRMEKIYE 320
+ K+++
Sbjct: 638 CVDEAFKLFQ 647
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 10/150 (6%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A + + E N+ ++ + +N +L G K Q L DL + P +++Y TLI
Sbjct: 467 AKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLI-DLMERVGTRPGVISYTTLI 525
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY----QMMKA 289
+ +D + + L P+ +TYN L+ GY A G++++ Y +M++
Sbjct: 526 GGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRA---GRIDDAYGVFREMLRN 582
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
G + P TY +L G + +++Y
Sbjct: 583 G-ITPGVVTYSTILHGLFTTRRFSEAKELY 611
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 81/221 (36%), Gaps = 17/221 (7%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRP------RLALEVLNWRRRQAGYGT--PMTKEEYTK 161
G CL R +++M +G +P L R YG M + T
Sbjct: 527 GHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITP 586
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLKTIGT--------YNALLGAYMYNGLSDKCQSLF 213
G+ I + F+EA +L I + YN +L N D+ LF
Sbjct: 587 GVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLF 646
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+ L + + I T+N +I + + F I L P+VFTY + +
Sbjct: 647 QSLCSK-DFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIE 705
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ ++++ M+ P++ L+R H G++ R
Sbjct: 706 EGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITR 746
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 59/318 (18%), Positives = 118/318 (37%), Gaps = 46/318 (14%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+G + G + + F + K +IV L + L + M+ +
Sbjct: 96 TYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMDILVKR 155
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM---KAGPVMPDTNTYLLLLRGYAH 308
+ + +P+V +YN L+ G+ + E+ MM + P+ +Y +++ G+
Sbjct: 156 MPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFT 215
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALMRLIPEKEY 365
G +++K Y L +D P + +I K V DR E + + + +K
Sbjct: 216 EG---QVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDR---AEGVFQQMIDKGV 269
Query: 366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
+P ND + C++ Y ++
Sbjct: 270 KP----------------------DNDTYN------------CLIHGYLSIGKWKEVVRM 295
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
++ + G + Y S + + R E + M I + + I+ + YAT
Sbjct: 296 LEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYAT 355
Query: 486 CGQRRKVNQVLGLMCKNG 503
G +++ +L LM +NG
Sbjct: 356 KGALSEMHDLLNLMVENG 373
>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Glycine max]
Length = 911
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 4/181 (2%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
K I +N+L+ Y Y GL D + L +K+E I +VT+N+L+S + + A
Sbjct: 432 KNICAWNSLISGYTYKGLFDNAEKLLIQMKEEG-IKADLVTWNSLVSGYSMSGCSEEALA 490
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
IK L+PNV ++ +I+G + + + M+ V P++ T LLR A
Sbjct: 491 VINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRACA 550
Query: 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
L + E+I+ H + + A+I YSK ++K + R I EK
Sbjct: 551 GPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMYSK---GGKLKVAHEVFRNIKEKTLPC 607
Query: 368 W 368
W
Sbjct: 608 W 608
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 102/230 (44%), Gaps = 21/230 (9%)
Query: 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
R N ++LA +F + +L ++N+++ +Y NG + LFR+++ ++I P I+
Sbjct: 279 RNNRLELARAVFDSTEDHNL---ASWNSIISSYAVNGCLNGAWDLFREMES-SSIKPDII 334
Query: 228 TYNTLISVFGRLLL--VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
T+N+L+S G LL +++ + ++ + P+ + + + + +EI+
Sbjct: 335 TWNSLLS--GHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHG 392
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
+ + D L+ Y + L + E ++ HH K ++I Y+
Sbjct: 393 YIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVF----HHTKNKNICAWNSLISGYTYKG 448
Query: 346 VTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSIN 391
+ D +K+ LI KE +++ L+ Y+ C EE IN
Sbjct: 449 LFDNAEKL-----LIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVIN 493
>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 999
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 3/166 (1%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI 222
I G+ N++ A LF EA K + ++ +N+L+ ++ +G + + LF D+ + +
Sbjct: 740 IDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMV-DKKL 798
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
+P+IVTY LI +G+ +++ E F +++ N+ PN TY L+ Y K+
Sbjct: 799 TPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMIS 858
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
+++ M+A + D Y ++ Y G +E + L K V+G
Sbjct: 859 LFKDMEARGIACDAIAYGVMASAYCKEGK--SLEALKLLNKSLVEG 902
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 3/152 (1%)
Query: 170 NNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
N+ A LF E +K + G Y L+ G +K SLF + ++++ S+
Sbjct: 712 GNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKS--VGSLSA 769
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
+N+LI F + V F ++ D L+PN+ TY LI Y A M + E+++ M+
Sbjct: 770 FNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDME 829
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
++P+T TY LL Y GN +M +++
Sbjct: 830 TRNIIPNTLTYTSLLLSYNQIGNRFKMISLFK 861
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY AL+ ++ G ++ + +D + ++VTYN +I + + + F E
Sbjct: 348 TYTALIDGFIKEGNIEEALRI-KDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNE 406
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + + P+ +TYN LI GY+ + K E+ MKA + P TY +L+ G HS +
Sbjct: 407 MLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSD 466
Query: 312 LPRMEKIY-ELVKHHVDGKEF---PLIRAMI 338
L + ++ +++++ V F LI+A +
Sbjct: 467 LQKANEVLDQMIRNGVKPNVFMYGTLIKAYV 497
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 76/345 (22%), Positives = 136/345 (39%), Gaps = 50/345 (14%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT IK + N A F K L I Y+A++ + NG + + +F
Sbjct: 594 YTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFL 653
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA--GYMTAW 275
K + P + YN+LIS F + ++ + E+ + ++PN+ YN LI GY +
Sbjct: 654 K-TGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSG 712
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
+ +++ M + + PD Y +L+ G GNL + ++ + G
Sbjct: 713 NLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVG-SLSAFN 771
Query: 336 AMICAYSKCSVTDRIKKIEA--LMRLIPEKEYRPWL--NVLLIRVYAKEDCLEEMEKSIN 391
++I ++ K K IEA L + +K+ P + +LI Y K + +EE E+
Sbjct: 772 SLIDSFCKHG-----KVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFL 826
Query: 392 DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451
D E + + ++ SY +++ N K
Sbjct: 827 D-METRNIIPNTLTYTSLLLSY------NQIGNRFK------------------------ 855
Query: 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
M S+ K+ME I C + +M AY G+ + ++L
Sbjct: 856 -----MISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLL 895
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 36/191 (18%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218
YT IK ++ +V + +E + + TYNA +G G D+ + + L
Sbjct: 245 YTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEV-KKLMM 303
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW--- 275
E + P TY L+ F + + F+ + S L+PN FTY LI G++
Sbjct: 304 EKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIE 363
Query: 276 -----------------------MWGKVEEIYQMMKA---------GPVMPDTNTYLLLL 303
M G + + +M KA + PDT TY LL+
Sbjct: 364 EALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLI 423
Query: 304 RGYAHSGNLPR 314
GY S ++ +
Sbjct: 424 DGYLKSHDMAK 434
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 16/127 (12%)
Query: 209 CQSLFRDLKK---------------EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
C +L RDL K EA I P + TY +I ++ V + E+
Sbjct: 210 CNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM- 268
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
+ PN+FTYN I G + E+ ++M + PD +TY LL+ G+
Sbjct: 269 EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSK 328
Query: 314 RMEKIYE 320
+ I+E
Sbjct: 329 EAKLIFE 335
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ A+ G K + + +++KE P++ TYN I + VD +
Sbjct: 244 TYTNVIKAHCKVGDVIKGKMVLSEMEKEC--KPNLFTYNAFIGGLCQTGAVDEALEVKKL 301
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + L P+ TY L+ G+ + + I++ M + + P+ TY L+ G+ GN
Sbjct: 302 MMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGN 361
Query: 312 LPRMEKI 318
+ +I
Sbjct: 362 IEEALRI 368
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 68/161 (42%), Gaps = 4/161 (2%)
Query: 154 MTKEEYTKGIKFAGRINNVDL--AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQ 210
+T +T + +G ++ DL A ++ + +K + Y L+ AY+ +
Sbjct: 447 LTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAI 506
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
L + + + P + YN LI R V+ + ++ + + PN TY I
Sbjct: 507 ELLKIMIANG-VLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINL 565
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
Y + E ++ M + ++P+ Y +L++G+ GN
Sbjct: 566 YSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGN 606
>gi|307105412|gb|EFN53661.1| hypothetical protein CHLNCDRAFT_58444 [Chlorella variabilis]
Length = 1131
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 106/214 (49%), Gaps = 12/214 (5%)
Query: 118 SNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTK--EEYTKGIKFAGRINNVD 173
S G A V +K LG P ++ + RR G G+P+ +E+T + + D
Sbjct: 250 SRGLAMV--IKDLGKGGLPHRGAQLFDLLRR-LGPGSPLAPLLDEFTFTSMISNCVAQQD 306
Query: 174 L--AADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
L A L E ++ + + + T++AL+ + G ++RD++ A ++VTYN
Sbjct: 307 LGRAMALAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVYRDMQA-AGCPANVVTYN 365
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
TLI V+G+ + A +++K + P T+N L+ T+ W + +Y+ M A
Sbjct: 366 TLIDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVYEQMAAS 425
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVK 323
P+T TY L+ ++ G+LP++ ++ E+V+
Sbjct: 426 SHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQ 459
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
Query: 182 AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV---FGR 238
AA+ H TYNAL+ A+ G K ++F+++ ++ S++TY++LIS G
Sbjct: 423 AASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQK-GCERSVITYSSLISACEKAGE 481
Query: 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298
L + F+E++ PNV +YN LI W K E+++ M+ PD +
Sbjct: 482 WKLALQL---FEEMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQGCRPDVVS 538
Query: 299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340
Y L++ Y G R +E +IRA CA
Sbjct: 539 YTALIQAYERGGQWRRALAAFE-----------EMIRARPCA 569
>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g74580-like [Cucumis
sativus]
Length = 877
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 130/314 (41%), Gaps = 18/314 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
+ K I + NV + LF++ + + + T+N + G D+ L +
Sbjct: 219 FNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIV 278
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E ++P +++YNTLI F + + E ++ +S + PN FTYN +I G+ A M
Sbjct: 279 SEG-LTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMM 337
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELV----KHHVDGKEFP 332
++I + +PD TY L+ G + G++ R M YE + KH +
Sbjct: 338 QNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSI-----I 392
Query: 333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSI 390
L ++ SK + + + LM+ + E P W L++ K CL + +
Sbjct: 393 LYNTLVKGLSKQGL---VLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGIL 449
Query: 391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450
NDA K + + ++ Y + +DK + S G Y++ +
Sbjct: 450 NDAIA-KGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCK 508
Query: 451 QRRVEEMESVLKEM 464
R+++ + K M
Sbjct: 509 ARKLDNVVDTFKAM 522
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I T+N L+ Y DK + D I+P ++TYNTL++ + +D++ F
Sbjct: 461 IFTFNTLIDGYCKQRNMDKAIEIL-DTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTF 519
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + + +PN+ TYN LI + + E+++ MK + PD T L+ G +
Sbjct: 520 KAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSN 579
Query: 310 GNLPRMEKIYEL 321
G L +K YEL
Sbjct: 580 GEL---DKAYEL 588
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 7/186 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y A++ + + LF ++ K+ I P I+T+N LI V + V E F +
Sbjct: 183 SYCAVISGFYKENCQIEAYHLFDEMLKQG-ICPDILTFNKLIHVLCKKGNVQESEKLFSK 241
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + PN+FT+N I G + + + + + + PD +Y L+ G+
Sbjct: 242 VMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSK 301
Query: 312 LPRME-KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI--EALMR-LIPEK-EYR 366
L E ++++V V+ EF +I + K + KI +A+ + IP++ Y
Sbjct: 302 LVEAECYLHKMVNSGVEPNEFTY-NTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYS 360
Query: 367 PWLNVL 372
+N L
Sbjct: 361 SLINGL 366
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 99/251 (39%), Gaps = 16/251 (6%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN ++ G + D + I P I T+NTLI + + +D
Sbjct: 426 IWTYNLVVNGLCKMGCLSDANGILNDAIAKGCI-PDIFTFNTLIDGYCKQRNMDKAIEIL 484
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ ++P+V TYN L+ G A V + ++ M P+ TY +L+ +
Sbjct: 485 DTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKD 544
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
+ ++++ +K + + +IC CS + K E + + EKEY+
Sbjct: 545 RKVSEAMELFKEMKTRGLTPDIVTLCTLICGL--CSNGELDKAYELFVTI--EKEYKFSY 600
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT-------TVRIMRCIVSSYFRCNAVDKL 422
+ + + C ++ S+ + HK + T R+M + SY + +D
Sbjct: 601 STAIFNIMINAFC-XKLNVSMAEKLFHKMGGSDCAPDNYTYRVM---IDSYCKTGNIDLA 656
Query: 423 ANFVKRAESAG 433
F+ S G
Sbjct: 657 HTFLLENISKG 667
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
V A +LF E + L I T L+ NG DK LF ++KE S S +N
Sbjct: 547 VSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFN 606
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+I+ F L V E F ++ S+ +P+ +TY +I Y
Sbjct: 607 IMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSY 647
>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
Length = 700
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 76/326 (23%), Positives = 135/326 (41%), Gaps = 33/326 (10%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLK---------KEANISPSIVTYNTLISVFGRLLLVD 243
YN L+ Y CQ RDL+ K +I P +TYN LI+ +L +V
Sbjct: 372 YNTLINGY--------CQ--VRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVT 421
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
E E++ S + P+V T+N LI Y TA K + M+ + D ++ ++
Sbjct: 422 KAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVV 481
Query: 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
+ + +G +P I + + + + ++I AY + T+ +AL L+ EK
Sbjct: 482 KAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTE-----QAL--LLVEK 534
Query: 364 EYRPWLNV------LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN 417
++ LL++ + ++E E+ I ++ V I+S+
Sbjct: 535 MKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIY-TLRNQGLRPDVVSYNTIISACCNKG 593
Query: 418 AVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW 477
DK ++ G R H+ + AS RV +ME + ++M + ++ S +
Sbjct: 594 DTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYG 653
Query: 478 IMYYAYATCGQRRKVNQVLGLMCKNG 503
IM AY C KV + M + G
Sbjct: 654 IMVDAYVRCENDSKVASLKKEMSEKG 679
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 141/363 (38%), Gaps = 31/363 (8%)
Query: 165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDL-KKEANIS 223
F GR +V A L A + +N ++ A + G D ++ R + + E
Sbjct: 134 FVGRHADVRAAFGLLVAAGAR--PDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAPP 191
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P +YN +I+ R F E+ D ++PN TYN +I G++ G +E
Sbjct: 192 PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKG---GDLEAG 248
Query: 284 Y----QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV---DGKEFPLIRA 336
+ QM+ GP P+ TY +LL G +G + + + + H DG + ++
Sbjct: 249 FRLRDQMLHDGP-KPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFD 307
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRP-WLNVLLIRVYAKEDCLEEMEKSINDAFE 395
+ R + + ++ L E + L + C + FE
Sbjct: 308 GLT---------RTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFE 358
Query: 396 ---HKTSVTTVRIMRCIVSSYFRCNAVDKLANFV--KRAESAGWRLCRSLYHSKMVMYAS 450
H V T I +++ Y C D F ++ +S R Y++ +
Sbjct: 359 MLVHTGLVPTTVIYNTLINGY--CQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCK 416
Query: 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNA 510
V + E ++ EME +D S +TF + AY T GQ K VL M + G V +
Sbjct: 417 LEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVIS 476
Query: 511 FPS 513
F S
Sbjct: 477 FGS 479
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 124/310 (40%), Gaps = 23/310 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ ++ G + L RD P++VTYN L+S R +D A E
Sbjct: 231 TYNTMIDGHVKGGDLEAGFRL-RDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDE 289
Query: 252 IKDSNLSPNVFTYNYLIAGYM-TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ ++ P+ FTY+ L G T + + +K G VM T +LL G G
Sbjct: 290 MASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKG-VMLGAYTCSILLNGLCKDG 348
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--- 367
+ + ++++E++ H + +I Y C V D ++ + + + RP
Sbjct: 349 KVAKAKQVFEMLVHTGLVPTTVIYNTLINGY--CQVRD-LRGAFCIFEQMKSRHIRPDHI 405
Query: 368 ----WLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
+N L L V ED + EMEKS D +V ++ +Y ++K
Sbjct: 406 TYNALINGLCKLEMVTKAEDLVMEMEKSGVDP--------SVETFNTLIDAYGTAGQLEK 457
Query: 422 LANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYY 481
+ + G + + S + + ++ E ++L +M + + + + +
Sbjct: 458 CFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIID 517
Query: 482 AYATCGQRRK 491
AY G +
Sbjct: 518 AYIESGDTEQ 527
>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 90/180 (50%), Gaps = 2/180 (1%)
Query: 170 NNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+DLA ++ +E K+ L + TY+ ++ Y G D ++F ++K + V+
Sbjct: 345 GQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKF-LGVGLDRVS 403
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YNTL+SV+ +L + +E++++ + +V TYN L+AGY + + +V +++ MK
Sbjct: 404 YNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMK 463
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
G V P+ TY L+ Y+ G +++ K + L A+I A K + +
Sbjct: 464 RGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVE 523
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 86/388 (22%), Positives = 162/388 (41%), Gaps = 61/388 (15%)
Query: 121 YAFVELMKQLGSRPRLALEVLNWR---RRQAGYGTPMTKEEYTK----GIKFAGRINNVD 173
Y F L+++LG+R A V + RR++G K E K I GR+ V+
Sbjct: 156 YTF--LLRELGNRGDSAKAVRCFEFAVRRESG------KNEQGKLASAMISTLGRLGKVE 207
Query: 174 LAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
LA +F A + + KT+ ++AL+ AY +G ++ +F +K + P++VTYN +
Sbjct: 208 LAKAVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNG-LMPNLVTYNAV 266
Query: 233 ISVFGRLLL-VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
I G+ + + F + + + P+ T+N L+A +W ++ M
Sbjct: 267 IDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKG 326
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTD 348
+ D TY LL G +M+ +E++ P + MI Y+K
Sbjct: 327 IDQDIFTYNTLLDAVCKGG---QMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAK----- 378
Query: 349 RIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC 408
+ +++ + + E ++ L V L RV S N
Sbjct: 379 -VGRLDDALNMFNEMKF---LGVGLDRV------------SYN----------------T 406
Query: 409 IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK 468
++S Y + ++ + K E+AG R Y++ + Y Q R +E+ V +EM+ +
Sbjct: 407 LLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGR 466
Query: 469 IDCSKKTFWIMYYAYATCGQRRKVNQVL 496
+ + T+ + Y+ G ++ +V
Sbjct: 467 VSPNLLTYSTLIDVYSKGGLYKEAMEVF 494
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 12/158 (7%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG------TYNALLGAYMYNGLSDKCQSL 212
Y+ I ++ +D A ++F E +K +G +YN LL Y G ++ +
Sbjct: 369 YSTMIDGYAKVGRLDDALNMFNE-----MKFLGVGLDRVSYNTLLSVYAKLGRFEQALDV 423
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
++++ A I +VTYN L++ +G+ D + F+E+K +SPN+ TY+ LI Y
Sbjct: 424 CKEMEN-AGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYS 482
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
++ + E+++ K + D Y L+ +G
Sbjct: 483 KGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNG 520
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 66/169 (39%), Gaps = 37/169 (21%)
Query: 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALL 197
+ LN G + + Y + ++ + A D+ E N + K + TYNALL
Sbjct: 384 DALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALL 443
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
Y D+ + +F ++K+ +SP+++TY+TLI V+ + L F+E K + L
Sbjct: 444 AGYGKQYRYDEVRRVFEEMKR-GRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGL 502
Query: 258 S-----------------------------------PNVFTYNYLIAGY 271
PNV TYN +I +
Sbjct: 503 KADVVLYSALIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAF 551
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 175 AADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A ++F E LK + Y+AL+ A NGL + +L ++ KE I P++VTYN++I
Sbjct: 490 AMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSVTLLDEMTKEG-IRPNVVTYNSII 548
Query: 234 SVFGR 238
FGR
Sbjct: 549 DAFGR 553
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 2/172 (1%)
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDK 208
YG Y + G++ +VD A + F + ++ + +Y L+ G D
Sbjct: 924 YGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDD 983
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
F LK +A + P +V YN +I+ GR + + F E+++ + P+++TYN LI
Sbjct: 984 ALHYFEKLK-QAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLI 1042
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
M + +IY+ ++ + P+ TY L+RGY SGN IY+
Sbjct: 1043 LNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYK 1094
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 94/418 (22%), Positives = 173/418 (41%), Gaps = 32/418 (7%)
Query: 96 VDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRL-----ALEVLNWRRRQAGY 150
V+D+ VF ++ + + RR+ + Y + K L R L ALE + R+AG+
Sbjct: 140 VEDMAFVFDLMQRQ---IIRRNVDTYLII--FKSLFIRGGLRQAPSALE----KMREAGF 190
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
+ Y I F + A +++ ++ LK ++ T++AL+ A
Sbjct: 191 --VLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTV 248
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
L +++ + P+I TY I V GR +D + + D P+V TY LI
Sbjct: 249 MGLLEEMES-MGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLID 307
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329
TA ++ MK+ PD TY+ LL ++ G+L ++EKI+ + DG
Sbjct: 308 ALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIW--TEMEADGY 365
Query: 330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL---NVL---LIRVYAKEDCL 383
++ I + C RI + L+ + ++ P L N L L+R +D L
Sbjct: 366 APDVVTFTILVNALCK-AGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDAL 424
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
+ + E T+ T + ++ S A++ R + C + +S
Sbjct: 425 DLFSNMESLGVE-PTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYS 483
Query: 444 KMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501
A R+ E +++ E+++ + T+ +M Y+ GQ + ++L M K
Sbjct: 484 ----LAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSK 537
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 90/208 (43%), Gaps = 14/208 (6%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ YN L+ ++ + +LF ++K A +P TYN+LI G+ ++ +
Sbjct: 789 TLKVYNLLIDGFLEVHNVEVAWNLFEEMKS-AGCAPDTFTYNSLIDAHGKSGKINELFDL 847
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ E+ PN TYN +I+ + + K ++Y + +G P T+ L+ G
Sbjct: 848 YDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLK 907
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE------ 362
SG L ++++ + H+ + ++ Y K D E R++ E
Sbjct: 908 SGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVD--TACEFFKRMVKEGIRPDL 965
Query: 363 KEYRPWLNVLLI--RVYAKEDCLEEMEK 388
K Y +++L I RV +D L EK
Sbjct: 966 KSYTILVDILCIAGRV---DDALHYFEK 990
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 8/191 (4%)
Query: 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALL 197
+ L+ G T Y I + G+ + A + F + + + I NA L
Sbjct: 422 DALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASL 481
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
+ G + +++F +LK + ++P VTYN ++ + ++ VD E+
Sbjct: 482 YSLAEMGRLGEAKAMFNELKS-SGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQC 540
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
P+V N LI T + G+VEE +QM M+ + P TY +LL G G + +
Sbjct: 541 EPDVIVINSLID---TLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQK 597
Query: 315 MEKIYELVKHH 325
+++E + H
Sbjct: 598 AVQLFESMNGH 608
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 111/270 (41%), Gaps = 22/270 (8%)
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNY 266
+++F KE + P++ YN LI F L V ++E A F+E+K + +P+ FTYN
Sbjct: 774 RNVFVKFTKELGVKPTLKVYNLLIDGF---LEVHNVEVAWNLFEEMKSAGCAPDTFTYNS 830
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
LI + + ++ ++Y M P+T TY +++ S R++K +L + V
Sbjct: 831 LIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSN---RLDKAMDLYYNLV 887
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAK----E 380
G P + R+ + + RP + +L+ Y K +
Sbjct: 888 SGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVD 947
Query: 381 DCLEEMEKSINDAFEHKTSVTTVRI-MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
E ++ + + T+ + + CI VD ++ ++ + AG
Sbjct: 948 TACEFFKRMVKEGIRPDLKSYTILVDILCIAGR------VDDALHYFEKLKQAGLDPDLV 1001
Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKI 469
Y+ + +R EE S+ EM+N I
Sbjct: 1002 AYNLMINGLGRSQRTEEALSLFHEMQNRGI 1031
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 180 AEAANKHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A+A LK+ G TYN ++ Y G D+ L ++ K P ++ N+LI
Sbjct: 493 AKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSK-VQCEPDVIVINSLI 551
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ V+ F +++ NL+P V TYN L+AG K ++++ M
Sbjct: 552 DTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCS 611
Query: 294 PDTNTYLLLL 303
P+T T+ LL
Sbjct: 612 PNTITFNTLL 621
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 6/156 (3%)
Query: 166 AGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
AGR V+ A +F +L T+ TYN LL G K LF + SP
Sbjct: 557 AGR---VEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHG-CSP 612
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
+ +T+NTL+ + VD F ++ N P+V T+N +I G++ ++
Sbjct: 613 NTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLF 672
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
MK + PD T LL G SG + +I E
Sbjct: 673 HQMKK-LLRPDHVTLCTLLPGVIKSGQIEDAFRITE 707
>gi|449455312|ref|XP_004145397.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15980-like [Cucumis sativus]
gi|449472579|ref|XP_004153637.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15980-like [Cucumis sativus]
Length = 499
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 113/263 (42%), Gaps = 5/263 (1%)
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
C+ +K + +SP++ T+NTL+ F R ++ + ++ DSN +PN ++Y+ L+
Sbjct: 239 CEIEEEHVKLKGRVSPNVHTFNTLMDCFYRDGFAGRVKEIWDQLADSNSTPNSYSYSILM 298
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
G+ EE+++ MK + PD Y ++ G+ +G+ R E+ Y ++
Sbjct: 299 TVLCEEKRTGEAEELWEEMKMKKLEPDVVAYNTIIGGFCKAGHTHRAEEFYREMELSGIE 358
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEM 386
F + +I Y D + MR K++ + L LIR+ E L E
Sbjct: 359 STFSTLEHLINGYCDTGDVDSALLVYKDMR---RKQFSLNASTLEGLIRMLCAERRLLEA 415
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446
A E+ + T+ +++ + ++ + G++ +Y S +
Sbjct: 416 LDVFGFAIEYSSFCPTMETFEILINELCQEGKIEGAFKLQAQMVGRGFKPNLKIYQSFID 475
Query: 447 MYASQRRVEEMESVLKEMENYKI 469
Y + E +E + KEM ++
Sbjct: 476 AYTKEGNAEMVEKLWKEMHEIQL 498
>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
Length = 563
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 8/202 (3%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G++NN A +LF E + + + TYN L+G + + L +K++ +SP+
Sbjct: 283 GKLNN---AFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDG-LSPN 338
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+++YNTLI + + +D + F ++K S SP++ TYN LIAG+ A V ++ +
Sbjct: 339 LISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVR 398
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
M+A + P TY +L+ S N+ + +IY ++ + + +I + C
Sbjct: 399 EMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLI--HGLCV 456
Query: 346 VTDRIKKIEALMRLIPEKEYRP 367
V D +K+ L + + E +P
Sbjct: 457 VGD-MKEASKLFKSLDEMHLKP 477
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 68/353 (19%), Positives = 137/353 (38%), Gaps = 16/353 (4%)
Query: 159 YTKGIKFAG--RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRD 215
Y+ GI G + +D ++ + L + Y L+ NG ++ + LF
Sbjct: 165 YSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYK 224
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ E ++ + TY LI+ F ++ L ++++K + + PNV+TYN +I
Sbjct: 225 MG-ELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDG 283
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
E++ M+ V + TY L+ G + E++ + + DG LI
Sbjct: 284 KLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERL--MCRMKRDGLSPNLIS 341
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL---NVLLIRVYAKEDC--LEEMEKSI 390
CS+ + + K +L + P L N+L+ ++ + +M + +
Sbjct: 342 YNTLIDGYCSIGN-LDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREM 400
Query: 391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450
+ VT +M +V R + ++K E AG +Y +
Sbjct: 401 EARGLSPSKVTYTILMDALV----RSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCV 456
Query: 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
++E + K ++ + + + M Y Y G + ++L M +NG
Sbjct: 457 VGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENG 509
>gi|242091740|ref|XP_002436360.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
gi|241914583|gb|EER87727.1| hypothetical protein SORBIDRAFT_10g001070 [Sorghum bicolor]
Length = 999
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 2/204 (0%)
Query: 146 RQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNG 204
R GT + + + I G+ +D A ++FA A L Y +L Y G
Sbjct: 737 RMISSGTSQSMQTFNLMISVFGKGGKLDKAVEMFAAAQELGLPIDEKMYTNMLSLYGKAG 796
Query: 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264
+ +F+ +K E I P +++N++I+ + L ++ F E++D +P+ F+Y
Sbjct: 797 RHQEASLMFKRMK-EDGIRPGKISFNSMINAYATSGLCSEAKSTFHEMQDCGHAPDSFSY 855
Query: 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
LI Y A ++ + EE +MM P + L+ + G + ++IY +K
Sbjct: 856 LALIRAYTEAKLYMEAEEAIRMMLNSSTTPSCPHFSHLIFAFLKEGQIGEAQRIYNQMKE 915
Query: 325 HVDGKEFPLIRAMICAYSKCSVTD 348
+ R M+ Y + + D
Sbjct: 916 ASVAPDLACCRTMMRVYMEHGLMD 939
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 86/192 (44%), Gaps = 12/192 (6%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG------TYNALLGAYMYNG 204
G P+ ++ YT + G+ A+ +F K +K G ++N+++ AY +G
Sbjct: 777 GLPIDEKMYTNMLSLYGKAGRHQEASLMF-----KRMKEDGIRPGKISFNSMINAYATSG 831
Query: 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264
L + +S F +++ + +P +Y LI + L E A + + +S+ +P+ +
Sbjct: 832 LCSEAKSTFHEMQ-DCGHAPDSFSYLALIRAYTEAKLYMEAEEAIRMMLNSSTTPSCPHF 890
Query: 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
++LI ++ G+ + IY MK V PD ++R Y G + +YE +
Sbjct: 891 SHLIFAFLKEGQIGEAQRIYNQMKEASVAPDLACCRTMMRVYMEHGLMDEGITLYETTRG 950
Query: 325 HVDGKEFPLIRA 336
+ F L A
Sbjct: 951 SLKPDSFILSAA 962
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 121/297 (40%), Gaps = 12/297 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ +++ L +K +F +++ + P TY+ LIS R + F+E
Sbjct: 281 TYTVVISSFVKEDLLEKAMDVFGEMR-QCRFVPEEATYSLLISASSRHGKGEQALRLFEE 339
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K + P+ +T L+A Y + K + M+ V+PD Y +L+R Y G
Sbjct: 340 MKAQGIVPSNYTCASLLALYYKNEDYSKALSLLSEMENSKVIPDEVIYGILIRIYGKLGL 399
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR-IKKIEALMRLIPEKEYRPWLN 370
E+ +E ++ + AM + DR ++ +E++M + + +
Sbjct: 400 YEEAEQTFEKIEKAGLLSDEQTYVAMAQVHLNAGDYDRALEVLESMMMRNVKPSHFSYSA 459
Query: 371 VLLIRVY-AKEDCLEEMEKSINDAFEHKTSVTTVRIMRC--IVSSYFRCNAVDKLANFVK 427
+L R Y AKED + + D F + + C ++ Y R ++K V
Sbjct: 460 IL--RCYVAKEDIV-----AAEDTFRALSQHGLPDVFCCNDLLRLYMRLGHLEKARALVL 512
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
+ +RL L + M Y + + E + K+++ T ++ YA
Sbjct: 513 KMREDDFRLDEDLSMTVMKFYCKSNMINDAEKIFKDIQRNNKTVKIPTMLLLIEMYA 569
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 112/264 (42%), Gaps = 17/264 (6%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE----AANKHLKTI 190
R A + W + Q Y + YT ++ G++ + LA + F E
Sbjct: 155 RQARDFFAWMKLQLCYEPSVVA--YTILLRLYGKVGKIKLAEETFLEMLQVGCEPDAVAC 212
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
GT LL Y G K LF + ++ P + YN +IS + L + ++
Sbjct: 213 GT---LLCMYARWG-RHKDMMLFYSAVRRRDLVPPVSVYNYMISSLQKQKLHGKVIHVWK 268
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+++++ PN FTY +I+ ++ + K +++ M+ +P+ TY LL+ + G
Sbjct: 269 QMREAGALPNQFTYTVVISSFVKEDLLEKAMDVFGEMRQCRFVPEEATYSLLISASSRHG 328
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM---RLIPEKEYRP 367
+ +++E +K +++ Y K + + + M ++IP++
Sbjct: 329 KGEQALRLFEEMKAQGIVPSNYTCASLLALYYKNEDYSKALSLLSEMENSKVIPDE---- 384
Query: 368 WLNVLLIRVYAKEDCLEEMEKSIN 391
+ +LIR+Y K EE E++
Sbjct: 385 VIYGILIRIYGKLGLYEEAEQTFE 408
>gi|168054024|ref|XP_001779433.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669118|gb|EDQ55711.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 570
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 108/240 (45%), Gaps = 8/240 (3%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I A R N D A F + + TY+ ++ Y G D+ +L+ +K
Sbjct: 81 YSTLISCANRCNYQDAAMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAIALYERVK 140
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+A P VTY T++ +FGR + + F+E+K S + P+ YN +IA A
Sbjct: 141 -QAGWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAGRM 199
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
G ++++ M+ V P+ T ++ Y+ GN+ ++++ ++ V + + A+
Sbjct: 200 GHALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRLRQGV-ACDVIVYNAV 258
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSINDAFE 395
+ C + E +R + E ++P W +I VYAK+ E ++ + E
Sbjct: 259 L---KMCREAGLASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAVEAHRTFSQMVE 315
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/325 (21%), Positives = 124/325 (38%), Gaps = 41/325 (12%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN +L + Q + D+ A++ P +TY+TLIS R D A F
Sbjct: 43 IYTYNVMLKVLRRGRQWEFSQQIAEDMAN-ADVRPDNITYSTLISCANRCNYQDAAMAWF 101
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ ++ P+V TY+ +I Y + + +Y+ +K PD TY ++R + +
Sbjct: 102 DRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAIALYERVKQAGWKPDKVTYGTMVRLFGRA 161
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G + I+E +K + + MI + K+
Sbjct: 162 GYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAGRMGHALKV---------------- 205
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC-NAVDKLANFVKR 428
EEME+ + +++TV + +Y RC N ++ L F +
Sbjct: 206 -------------FEEMER--EGVKPNAVTLSTV------METYSRCGNVMEGLEVFQRL 244
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+ + +Y++ + M E E L+EM + T+ M YA G
Sbjct: 245 RQGVACDVI--VYNAVLKMCREAGLASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGM 302
Query: 489 RRKVNQVLGLMCKNGYDVPVNAFPS 513
+ ++ M + GY + V A+ S
Sbjct: 303 AVEAHRTFSQMVEAGYQIDVMAYTS 327
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Query: 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
R NV ++F + YNA+L GL+ + + R++ E+ P+
Sbjct: 230 RCGNVMEGLEVFQRLRQGVACDVIVYNAVLKMCREAGLASEAEQYLREMT-ESGHQPNDW 288
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TY +ISV+ + + F ++ ++ +V Y L+ Y A + KV+EI M
Sbjct: 289 TYRNMISVYAKKGMAVEAHRTFSQMVEAGYQIDVMAYTSLLQAYGNAKEYNKVQEILDEM 348
Query: 288 KAGPVMPDTNTYLLLL 303
+ PD ++L
Sbjct: 349 TSVNCAPDERLCCVIL 364
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 67/165 (40%), Gaps = 6/165 (3%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I GR + A +F E + +K T + ++ Y G + +F+ L+
Sbjct: 186 YNIMIACLGRAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRLR 245
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ ++ ++ YN ++ + L E +E+ +S PN +TY +I+ Y M
Sbjct: 246 Q--GVACDVIVYNAVLKMCREAGLASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMA 303
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
+ + M D Y LL+ Y GN K+ E++
Sbjct: 304 VEAHRTFSQMVEAGYQIDVMAYTSLLQAY---GNAKEYNKVQEIL 345
>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
Length = 586
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 131/309 (42%), Gaps = 28/309 (9%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI-KDSNLSPNVFTYNYLIAGYMTAWM 276
E SP VT+N ++ R V + + +D PNV T+ +I+GY A
Sbjct: 281 NEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKA-- 338
Query: 277 WGKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
GK+E+ +Y M A +MP+T TY +L+ GY G+L ++Y+ + +
Sbjct: 339 -GKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVT 397
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV----LLIRVYAKEDCLEEMEKS 389
++I Y +C D +I + M ++R NV ++I K++ +E
Sbjct: 398 FSSLIDGYCRCGQLDDALRIWSDM-----AQHRIQPNVYTFSIIIHSLCKQNRSDEAICL 452
Query: 390 INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA-ESAGWRLCRSLYHSKMVMY 448
+N+ I ++ +C VD+ AN +++ E G R + Y ++ Y
Sbjct: 453 LNELNLRPDIAPQAFIYNPVIDVLCKCGKVDE-ANLIRKGMEEKGCRPDKYTYTILIIGY 511
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC----GQRRKVNQVLGLMCKNGY 504
+ R+ E EM + CS + I + +C G +V+ V+ L +G
Sbjct: 512 CMKSRISEAIMFFHEM--VEAGCSPDS--ITVNCFISCLLKAGMPNEVDHVMRL--ASGG 565
Query: 505 DVPVNAFPS 513
+ FPS
Sbjct: 566 ASSIQEFPS 574
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + + R L+++ P++VT+ ++IS + + ++ A + +
Sbjct: 291 THNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYND 350
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ S + PN TYN LI GY G E+YQ M PD T+ L+ GY G
Sbjct: 351 MVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQ 410
Query: 312 LPRMEKIYELVKHH 325
L +I+ + H
Sbjct: 411 LDDALRIWSDMAQH 424
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 14/217 (6%)
Query: 119 NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADL 178
NGY V LGS A+EV R P ++ I R +D A +
Sbjct: 368 NGYGKV---GDLGS----AVEVYQQMTR---LRCPPDVVTFSSLIDGYCRCGQLDDALRI 417
Query: 179 FAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
+++ A ++ + T++ ++ + SD+ L +L +I+P YN +I V
Sbjct: 418 WSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLNELNLRPDIAPQAFIYNPVIDVLC 477
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY-MTAWMWGKVEEIYQMMKAGPVMPDT 296
+ VD + +++ P+ +TY LI GY M + + + ++M++AG PD+
Sbjct: 478 KCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAG-CSPDS 536
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG-KEFP 332
T + +G ++ + L +EFP
Sbjct: 537 ITVNCFISCLLKAGMPNEVDHVMRLASGGASSIQEFP 573
>gi|302819136|ref|XP_002991239.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
gi|300140950|gb|EFJ07667.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
Length = 561
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 73/332 (21%), Positives = 134/332 (40%), Gaps = 18/332 (5%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y +L AY +G DK + +F+ + E + +I Y I +GR D EA FQ +
Sbjct: 157 YFLVLLAYCKDGQVDKTEGIFQRMA-ELGVVANIEMYTLQIEGYGRRRSFDKAEAVFQRL 215
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP---VMPDTNTYLLLLRGYAHS 309
+ SP TY ++ Y A V+ I++++ P V PD Y L++ Y
Sbjct: 216 LTTGPSPTAQTYQTMMKSYSEAGRLDDVQRIFKLVTDSPSPTVKPDARMYNLMIHTYGKQ 275
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMI-CAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G + + +Y+ +K +++ C + D +K++A +L P+ +
Sbjct: 276 GKVEQAMSVYQSMKRERVALTIVTFNSLLACQKTWKDAEDVFRKLQA-AKLDPDV----F 330
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
L+ YAK E + +D T V ++++Y +C + +K+
Sbjct: 331 SYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQV-AYNALINAYAKCKDPEGARAVLKQ 389
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+ G Y S + Y S + + E + M+ + + +TF ++ YA +
Sbjct: 390 MKQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLRMKEADLQPNLQTFCVLMTGYANGNK 449
Query: 489 RRKVNQVLGLMCKNG-------YDVPVNAFPS 513
+ + M G Y V VNA+ S
Sbjct: 450 LDNMMRSFETMKLAGLEPNRHVYTVLVNAYGS 481
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
Query: 175 AADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A D+F + A K + +Y AL+ AY ++ + F D+ A I P+ V YN LI
Sbjct: 313 AEDVFRKLQAAKLDPDVFSYTALVNAYAKARRAECAHAAFDDMIA-AGIRPTQVAYNALI 371
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ + + + A +++K + +P V +Y LI+ Y++ + K E+ MK +
Sbjct: 372 NAYAKCKDPEGARAVLKQMKQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLRMKEADLQ 431
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
P+ T+ +L+ GYA+ L M + +E +K
Sbjct: 432 PNLQTFCVLMTGYANGNKLDNMMRSFETMK 461
>gi|297842914|ref|XP_002889338.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335180|gb|EFH65597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 712
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 77/144 (53%), Gaps = 16/144 (11%)
Query: 176 ADLFAEAAN--KHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
A LF E+ N + +K +G T+N+LL + G + +F ++++ ++P
Sbjct: 154 AGLFQESVNLFQTMKKMGISPSVLTFNSLLSILLKRGRTGMAHDMFDEMRRTYGVTPDSY 213
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
T+NTLIS F + +VD F+E++ + +P+V TYN +I G A GKV+ + ++
Sbjct: 214 TFNTLISGFCKNSMVDQAFTIFKEMELYSCNPDVVTYNTIIDGLCRA---GKVKIAHNLL 270
Query: 288 -----KAGPVMPDTNTYLLLLRGY 306
KA V P+ +Y LLRGY
Sbjct: 271 NGMLKKATAVHPNIVSYTTLLRGY 294
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 97/187 (51%), Gaps = 15/187 (8%)
Query: 134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAAD-LFA--EAANKHLKTI 190
P L +W + G ++ + ++F GR N++ A + LF+ + +N +K
Sbjct: 84 PADGLRFFDWVYNK---GFSHKEQSFFLMLEFLGRARNLNAARNFLFSIEKRSNGCVKLQ 140
Query: 191 GTY-NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLLLVDHME 246
Y N+L+ +Y GL + +LF+ +KK ISPS++T+N+L+S+ GR + M
Sbjct: 141 DRYFNSLIRSYGNAGLFQESVNLFQTMKK-MGISPSVLTFNSLLSILLKRGRTGMAHDM- 198
Query: 247 AAFQEIKDS-NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
F E++ + ++P+ +T+N LI+G+ M + I++ M+ PD TY ++ G
Sbjct: 199 --FDEMRRTYGVTPDSYTFNTLISGFCKNSMVDQAFTIFKEMELYSCNPDVVTYNTIIDG 256
Query: 306 YAHSGNL 312
+G +
Sbjct: 257 LCRAGKV 263
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 102/244 (41%), Gaps = 24/244 (9%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN--VDLAADLFAEAANKHLK- 188
R +A ++ + RR G +T + YT +G N VD A +F E
Sbjct: 190 GRTGMAHDMFDEMRRTYG----VTPDSYTFNTLISGFCKNSMVDQAFTIFKEMELYSCNP 245
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRD-LKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+ TYN ++ G +L LKK + P+IV+Y TL+ + +D
Sbjct: 246 DVVTYNTIIDGLCRAGKVKIAHNLLNGMLKKATAVHPNIVSYTTLLRGYCMKQEIDEALL 305
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM----PDTNTYLLLL 303
F E+ L PN TYN LI G A + +EI + G PD T+ +L+
Sbjct: 306 VFHEMLTRGLKPNAVTYNTLIKGLSEAHRY---DEIKGFLIGGDAFTTFSPDACTFNILI 362
Query: 304 RGYAHSGNLPRMEKIYEL---VKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI 360
+ + +G+L K+++ +K H D + ++ +C + + K E L +
Sbjct: 363 KAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIRTLC------LRNEFDKAETLFNEL 416
Query: 361 PEKE 364
EKE
Sbjct: 417 FEKE 420
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 23/144 (15%)
Query: 200 YMYN-GLSDKCQSLF---------RDLKKEANISPSIVT------------YNTLISVFG 237
++YN G S K QS F R+L N SI +N+LI +G
Sbjct: 93 WVYNKGFSHKEQSFFLMLEFLGRARNLNAARNFLFSIEKRSNGCVKLQDRYFNSLIRSYG 152
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDT 296
L FQ +K +SP+V T+N L++ + G +++ +M + V PD+
Sbjct: 153 NAGLFQESVNLFQTMKKMGISPSVLTFNSLLSILLKRGRTGMAHDMFDEMRRTYGVTPDS 212
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYE 320
T+ L+ G+ + + + I++
Sbjct: 213 YTFNTLISGFCKNSMVDQAFTIFK 236
>gi|255660888|gb|ACU25613.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 481
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E++ ++ + + +I ++ K D + +A++RL
Sbjct: 271 MSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320
>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
Length = 550
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 8/202 (3%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G++NN A +LF E + + + TYN L+G + + L +K++ +SP+
Sbjct: 270 GKLNN---AFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDG-LSPN 325
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+++YNTLI + + +D + F ++K S SP++ TYN LIAG+ A V ++ +
Sbjct: 326 LISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVR 385
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
M+A + P TY +L+ S N+ + +IY ++ + + +I + C
Sbjct: 386 EMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLI--HGLCV 443
Query: 346 VTDRIKKIEALMRLIPEKEYRP 367
V D +K+ L + + E +P
Sbjct: 444 VGD-MKEASKLFKSLDEMHLKP 464
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 70/363 (19%), Positives = 141/363 (38%), Gaps = 16/363 (4%)
Query: 159 YTKGIKFAG--RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRD 215
Y+ GI G + +D ++ + L + Y L+ NG ++ + LF
Sbjct: 152 YSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYK 211
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ E ++ + TY LI+ F ++ L ++++K + + PNV+TYN +I
Sbjct: 212 MG-ELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDG 270
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
E++ M+ V + TY L+ G + E++ + + DG LI
Sbjct: 271 KLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERL--MCRMKRDGLSPNLIS 328
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL---NVLLIRVYAKEDC--LEEMEKSI 390
CS+ + + K +L + P L N+L+ ++ + +M + +
Sbjct: 329 YNTLIDGYCSIGN-LDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREM 387
Query: 391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450
+ VT +M +V R + ++K E AG +Y +
Sbjct: 388 EARGLSPSKVTYTILMDALV----RSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCV 443
Query: 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNA 510
++E + K ++ + + + M Y Y G + ++L M +NG V +
Sbjct: 444 VGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVAS 503
Query: 511 FPS 513
+ S
Sbjct: 504 YNS 506
>gi|15228104|ref|NP_181260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216851|sp|Q9ZUU3.1|PP190_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37230
gi|4056478|gb|AAC98044.1| unknown protein [Arabidopsis thaliana]
gi|28973644|gb|AAO64144.1| unknown protein [Arabidopsis thaliana]
gi|110736716|dbj|BAF00321.1| hypothetical protein [Arabidopsis thaliana]
gi|330254276|gb|AEC09370.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 757
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 2/155 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN +L + + + F D+K ISP T+NT+I+ F R +D E F E
Sbjct: 257 TYNLMLWGFFLSLRLETALRFFEDMKTRG-ISPDDATFNTMINGFCRFKKMDEAEKLFVE 315
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K + + P+V +Y +I GY+ I++ M++ + P+ TY LL G +G
Sbjct: 316 MKGNKIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGK 375
Query: 312 LPRMEKIYE-LVKHHVDGKEFPLIRAMICAYSKCS 345
+ + I + ++ H+ K+ + ++ + SK
Sbjct: 376 MVEAKNILKNMMAKHIAPKDNSIFLKLLVSQSKAG 410
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
T+N ++ + D+ + LF ++K I PS+V+Y T+I + + VD F+
Sbjct: 291 ATFNTMINGFCRFKKMDEAEKLFVEMKGN-KIGPSVVSYTTMIKGYLAVDRVDDGLRIFE 349
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHS 309
E++ S + PN TY+ L+ G A + + I + M A + P D + +L LL + +
Sbjct: 350 EMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMAKHIAPKDNSIFLKLLVSQSKA 409
Query: 310 GNL 312
G++
Sbjct: 410 GDM 412
>gi|255660912|gb|ACU25625.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 481
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N L+ + +G + F D+K ISP +VTYNT+I+ + R+ + E F E
Sbjct: 152 TFNVLIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMXEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G N
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLC---N 267
Query: 312 LPRMEKIYELVKHHVD 327
+M + ++K +D
Sbjct: 268 AEKMSEARSILKEMMD 283
>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 78/142 (54%), Gaps = 2/142 (1%)
Query: 170 NNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+D+A ++ +E K+ L + TY+ ++ Y G D ++LF ++K IS V+
Sbjct: 232 GQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKF-LGISLDRVS 290
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YNTL+S++ +L + +E+++S + +V TYN L+ GY + + V ++++ MK
Sbjct: 291 YNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMK 350
Query: 289 AGPVMPDTNTYLLLLRGYAHSG 310
A V P+ TY L+ Y+ G
Sbjct: 351 ARHVSPNLLTYSTLIDVYSKGG 372
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 15/186 (8%)
Query: 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI 190
G + +A E+++ + +T G AGR+++ A +LF E +K +
Sbjct: 231 GGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDD---ARNLFNE-----MKFL 282
Query: 191 G------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDH 244
G +YN LL Y G ++ + R+++ + I +VTYN L+ +G+ D
Sbjct: 283 GISLDRVSYNTLLSIYAKLGRFEEAMDVCREMEN-SGIRKDVVTYNALLGGYGKQYKYDV 341
Query: 245 MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304
+ F+E+K ++SPN+ TY+ LI Y ++ + ++++ K + D Y L+
Sbjct: 342 VRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALID 401
Query: 305 GYAHSG 310
+G
Sbjct: 402 ALCKNG 407
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/284 (22%), Positives = 115/284 (40%), Gaps = 55/284 (19%)
Query: 86 SALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRP---------RL 136
+++ E L NV + K R L+ R S +V L+++LG+R
Sbjct: 6 TSVAQEALQNVIEYGKDERALENVLLNFESRLSGSDDYVFLLRELGNRGDCKKAICCFEF 65
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK-HLKTIGTYNA 195
A++ + Q + M I GR+ V++A +F A + + T+ ++A
Sbjct: 66 AVKRERKKNEQGKLASAM--------ISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSA 117
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR--------LLLVDHM-- 245
++ AY +G ++ +F +K + + P++VTYN +I G+ L + D M
Sbjct: 118 IISAYGRSGYCNEAIKIFYSMK-DYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLR 176
Query: 246 -----------------------EAAFQ---EIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
EAA E+ + + ++FTYN L+
Sbjct: 177 NGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDM 236
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
EI M A ++P+ TY ++ GYA +G L ++ +K
Sbjct: 237 AFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMK 280
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 2/170 (1%)
Query: 175 AADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A L E N+ + + I TYN LL A G D + ++ + NI P++VTY+T+I
Sbjct: 202 ARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAK-NILPNVVTYSTMI 260
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ + +D F E+K +S + +YN L++ Y + + ++ + M+ +
Sbjct: 261 DGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIR 320
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
D TY LL GY + K++E +K +I YSK
Sbjct: 321 KDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSK 370
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 1/162 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N+LL GL + +SL ++ I I TYNTL+ + +D E
Sbjct: 185 TFNSLLAVCSKGGLWEAARSLSCEMVNRG-IDQDIFTYNTLLDAVCKGGQLDMAFEIMSE 243
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ N+ PNV TY+ +I GY A ++ MK + D +Y LL YA G
Sbjct: 244 MPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGR 303
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
+ +++ K+ A++ Y K D ++K+
Sbjct: 304 FEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKV 345
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G+ D+ +F E +H+ + TY+ L+ Y GL + +FR+ KK A +
Sbjct: 334 GKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKK-AGLKAD 392
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+V Y+ LI + LV+ + E+ + PNV TYN +I +
Sbjct: 393 VVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAF 438
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 175 AADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A D+F E LK + Y+AL+ A NGL + SL ++ KE I P++VTYN++I
Sbjct: 377 AMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEG-IRPNVVTYNSII 435
Query: 234 SVFGR 238
FGR
Sbjct: 436 DAFGR 440
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 91/247 (36%), Gaps = 40/247 (16%)
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM-WGKVEEI 283
++ ++ +IS +GR + F +KD L PN+ TYN +I + + +V EI
Sbjct: 111 TVYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEI 170
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYS 342
+ M + PD T+ LL + G + E+V +D F ++ A
Sbjct: 171 FDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVNRGIDQDIFTY-NTLLDAVC 229
Query: 343 KCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTT 402
K D +I M +P K P +V T
Sbjct: 230 KGGQLDMAFEI---MSEMPAKNILP-------------------------------NVVT 255
Query: 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
M + Y + +D N + G L R Y++ + +YA R EE V +
Sbjct: 256 YSTM---IDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCR 312
Query: 463 EMENYKI 469
EMEN I
Sbjct: 313 EMENSGI 319
>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g12100, mitochondrial; Flags: Precursor
gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 816
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 130/303 (42%), Gaps = 17/303 (5%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEA-ANKHLKTIGTYNA 195
LE+ N + Y + G+ R+N+ A LF E A + L ++ TYN
Sbjct: 198 GLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMND---AEQLFDEMLARRLLPSLITYNT 254
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ Y G +K + R+ K +I PS++T+NTL+ + +V+ E +E+KD
Sbjct: 255 LIDGYCKAGNPEKSFKV-RERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDL 313
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
P+ FT++ L GY + +Y+ V + T +LL G + +
Sbjct: 314 GFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKA 373
Query: 316 EKIY--ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK---KIEALMRLIPEKEYRPWLN 370
E+I E+ K V + + MI Y C D + KIEA+ + + ++ +
Sbjct: 374 EEILGREMAKGLVPNE--VIYNTMIDGY--CRKGDLVGARMKIEAMEKQGMKPDHLAY-- 427
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
LIR + + +E EK +N + K +V ++ Y R DK + +K E
Sbjct: 428 NCLIRRFCELGEMENAEKEVN-KMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEME 486
Query: 431 SAG 433
G
Sbjct: 487 DNG 489
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 36/179 (20%)
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G+ G+++ A DL E + K LK + TYN+L+ Y + G +C +L+ ++K+ +
Sbjct: 573 GLSMTGKLSE---AEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKR-S 628
Query: 221 NISPSIVTYNTLISV------------FGRL-----LLV-----------DHMEAAF--- 249
I P++ TY+ LIS+ FG + LLV ME AF
Sbjct: 629 GIKPTLKTYHLLISLCTKEGIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQ 688
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+++ + ++ + TYN LI G + +V + M A + P+ +TY ++++G+
Sbjct: 689 KQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCE 747
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 201 MYNGLSDKC------QSLFRDLKK--EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+YN L D C + FR K+ + I ++VTYNTLI + E EI
Sbjct: 531 IYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEI 590
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
L P+VFTYN LI+GY A + +Y+ MK + P TY LL+
Sbjct: 591 SRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLI 641
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 102/240 (42%), Gaps = 48/240 (20%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLL----- 240
++ TYN L+G Y DKC + ++++ + P++V+Y TLI+ +LL
Sbjct: 458 SVETYNILIGGYGRKYEFDKCFDILKEMEDNGTM-PNVVSYGTLINCLCKGSKLLEAQIV 516
Query: 241 ------------------LVD------HMEAAF---QEIKDSNLSPNVFTYNYLIAGYMT 273
L+D +E AF +E+ + N+ TYN LI G
Sbjct: 517 KRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSM 576
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
+ E++ + + PD TY L+ GY +GN+ R +YE +K G + P
Sbjct: 577 TGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRS--GIK-PT 633
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSIN 391
++ S C+ + IE RL E +P L V ++ YA +MEK+ N
Sbjct: 634 LKTYHLLISLCTK----EGIELTERLFGEMSLKPDLLVYNGVLHCYAVHG---DMEKAFN 686
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 205 LSD--KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF 262
LSD K LF +K + I PS+ YN LI + ++ E F E+ L P++
Sbjct: 192 LSDVGKGLELFNRMKHD-RIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLI 250
Query: 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
TYN LI GY A K ++ + MKA + P T+ LL+G +G + E + + +
Sbjct: 251 TYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEM 310
Query: 323 K 323
K
Sbjct: 311 K 311
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E++ PS Y I +L V F +K + P+VF YN LI G
Sbjct: 172 ESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMN 231
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK-HHVD 327
E+++ M A ++P TY L+ GY +GN + K+ E +K H++
Sbjct: 232 DAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIE 281
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN ++ Y G + ++K+ + P + YN LI F L +++ E ++
Sbjct: 392 YNTMIDGYCRKGDLVGARMKIEAMEKQG-MKPDHLAYNCLIRRFCELGEMENAEKEVNKM 450
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
K +SP+V TYN LI GY + + K +I + M+ MP+ +Y L+
Sbjct: 451 KLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLI 501
>gi|255660886|gb|ACU25612.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 484
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E++ ++ + + +I ++ K D + +A++RL
Sbjct: 271 MSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320
>gi|255660880|gb|ACU25609.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 484
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E++ ++ + + +I ++ K D + +A++RL
Sbjct: 271 MSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320
>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 80/381 (20%), Positives = 155/381 (40%), Gaps = 21/381 (5%)
Query: 144 RRRQAGYGTPMTKEEYTKGIKFAGRINNVD--LAADLFAEAANKHLK-TIGTYNALLGAY 200
R RQ GY P Y+ I+ R N +D + L++E L+ + N ++ +
Sbjct: 209 RMRQDGY--PSDFVNYSLIIQSLVRSNRIDSPILQKLYSEIQCDKLELDVQLSNDIIVGF 266
Query: 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN 260
G +K F + + + +SP T +IS G + EA F+E+KD+ L P
Sbjct: 267 AKAGDPNKAME-FLGMVQASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPK 325
Query: 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
YN L+ GY+ A M E I M+ V PD TY LL+ Y+++G R E
Sbjct: 326 TRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAG---RWESARI 382
Query: 321 LVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVY 377
++K P + ++ +Y + ++ M+ + R + NV +I +
Sbjct: 383 VLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNV-MIDTF 441
Query: 378 AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC 437
K CL+ + + TV ++ + + ++ + G+ C
Sbjct: 442 GKFSCLDHAMDTFDKMLSEGIQPDTV-TWNTLIDCHCKAELHERAEELFEEMMEKGFSPC 500
Query: 438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLG 497
+ ++ + + Q R +++++++ M + + + T+ + Y G+ + L
Sbjct: 501 VTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLE 560
Query: 498 LMCKNG-------YDVPVNAF 511
M G Y+ +NA+
Sbjct: 561 DMKSAGLKPSSTMYNALINAY 581
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 2/138 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLK 217
YT I G+ A + + + LK T YNAL+ AY GLS++ + FR L
Sbjct: 539 YTTLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFR-LM 597
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ ++ PS++ N+LI+ FG + + +K+++L P+V TY L+ + +
Sbjct: 598 RADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKALIRVDKF 657
Query: 278 GKVEEIYQMMKAGPVMPD 295
KV +Y+ M PD
Sbjct: 658 NKVPSVYEEMILAGCTPD 675
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 2/153 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I G+ + +D A D F + ++ ++ T+N L+ + L ++ + LF ++
Sbjct: 434 YNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMM 493
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E SP + T+N +I+ FG D ++ ++ L PNV TY LI Y + +
Sbjct: 494 -EKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRF 552
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E + MK+ + P + Y L+ YA G
Sbjct: 553 SDAIECLEDMKSAGLKPSSTMYNALINAYAQKG 585
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Query: 187 LKTIGTYNALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM 245
L + TY L+ Y +G SD + L D+K A + PS YN LI+ + + L +
Sbjct: 533 LPNVVTYTTLIDIYGKSGRFSDAIECL-EDMKS-AGLKPSSTMYNALINAYAQKGLSEQA 590
Query: 246 EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
AF+ ++ +L P++ N LI + + + + MK + PD TY L++
Sbjct: 591 VNAFRLMRADSLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKA 650
Query: 306 YAHSGNLPRMEKIYE 320
++ +YE
Sbjct: 651 LIRVDKFNKVPSVYE 665
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 175 AADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +LF E K + T+N ++ ++ D ++L +++ + P++VTY TLI
Sbjct: 485 AEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRS-LGLLPNVVTYTTLI 543
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
++G+ +++K + L P+ YN LI Y + + +++M+A +
Sbjct: 544 DIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLK 603
Query: 294 P 294
P
Sbjct: 604 P 604
>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74750-like [Glycine max]
Length = 873
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 96/237 (40%), Gaps = 40/237 (16%)
Query: 119 NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADL 178
+ Y +++KQL P +AL +W RRQ G+ YT + GR D + L
Sbjct: 343 DAYQANQILKQL-QDPSVALGFFDWLRRQPGF--RHDGHTYTTMVGILGRARRFDSISKL 399
Query: 179 FAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
+ + + TYN L+ Y + ++F ++ +E P VTY TLI +
Sbjct: 400 LEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNEM-QEVGCEPDRVTYCTLIDIHA 458
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI-----AGYMTAWMWGKVE----------- 281
+ +D + ++ ++++ LSP+ FTY+ +I AG + A W E
Sbjct: 459 KAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLV 518
Query: 282 -------------------EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
++Y M+ PD TY +++ H G L E ++
Sbjct: 519 TYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVF 575
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 6/185 (3%)
Query: 143 WRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYM 201
++R Q +P T Y+ I G+ N+ A LF E + + TYN ++
Sbjct: 470 YKRMQEAGLSPDTFT-YSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQA 528
Query: 202 YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV 261
+ L+ D++ A P VTY+ ++ G ++ E+ F E++ N P+
Sbjct: 529 KARNYEMALKLYHDMQN-AGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDE 587
Query: 262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321
Y L+ + A K E YQ M ++P+ T LL + L R+ Y L
Sbjct: 588 PVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLPNVPTCNSLLSAFLR---LHRLPDAYNL 644
Query: 322 VKHHV 326
V+ V
Sbjct: 645 VQSMV 649
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I + N ++A L+ + N + TY+ ++ A + G ++ +S+F +++
Sbjct: 520 YNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQ 579
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ N P Y L+ ++G+ V+ +Q + ++ L PNV T N L++ ++
Sbjct: 580 QK-NWVPDEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLPNVPTCNSLLSAFLRLHRL 638
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLL 303
+ Q M A + P TY LLL
Sbjct: 639 PDAYNLVQSMVALGLRPSLQTYTLLL 664
>gi|255660906|gb|ACU25622.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 484
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTIINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G N
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLC---N 267
Query: 312 LPRMEKIYELVKHHVD 327
+M + ++K +D
Sbjct: 268 AEKMTEARSILKEMMD 283
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G +G+ V+ A F + ++ + + TYN ++ Y ++ + F ++K
Sbjct: 159 GFFLSGK---VETANRFFEDMKSREISPDVVTYNTIINGYYRVKKMEEAEKYFVEMKGR- 214
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
NI P++VTY TLI + + VD +E+K + PN TY+ L+ G A +
Sbjct: 215 NIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMTEA 274
Query: 281 EEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNL 312
I + M + P D + ++ L+ +SGNL
Sbjct: 275 RSILKEMMDKYLAPTDNSIFMRLISSQCNSGNL 307
>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 988
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 7/115 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI---SVFGRLLLVDHMEAA 248
TY +++ A++ +GL K + +F D+ K+ I PS+VTY LI +V GRL D +
Sbjct: 524 TYTSIIHAHLISGLLRKAEEVFSDMLKKG-IHPSVVTYTVLIHSYAVRGRL---DFAKKY 579
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
F E++D +SPNV TYN LI G M ++ M++ V P+ TY +L+
Sbjct: 580 FDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILI 634
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 2/154 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
++ N+ +A +LF E ++ LK Y + + G K + ++K E P +
Sbjct: 429 QMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEG-FPPDL 487
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
+TYN LI+ +L D Q+++ + P+ TY +I ++ + + K EE++
Sbjct: 488 ITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSD 547
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
M + P TY +L+ YA G L +K ++
Sbjct: 548 MLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFD 581
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A ++F++ K + ++ TY L+ +Y G D + F +++ + +SP+++TYN LI
Sbjct: 541 AEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQ-DKGVSPNVITYNALI 599
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ ++D F E++ +SPN +TY LI W ++Y+ M +
Sbjct: 600 YGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIK 659
Query: 294 PDTNTYLLLLR 304
PD+ T+ L++
Sbjct: 660 PDSCTHSALMK 670
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 5/177 (2%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
A+EVL+ R ++ G+ G D A +L + + LK + TYN
Sbjct: 226 AVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEF---DRAKELIEQMSMLGLKVSAHTYNP 282
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ + + ++ L R++ + P++VTYNT++ RL V + +
Sbjct: 283 LIRGFCKKEMFEEANDLRREMLGRGAL-PTVVTYNTIMYSLCRLGRVSDARRYLDVMVNE 341
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+L P++ +YN LI GY + + ++ +++ ++P TY L+ G +GNL
Sbjct: 342 DLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNL 398
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 2/174 (1%)
Query: 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALL 197
E + RR G G T Y + R+ V A N+ L + +YN L+
Sbjct: 295 EANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLI 354
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
Y G + LF +L+ + N+ PS+VTYNTLI R +D + ++ L
Sbjct: 355 YGYSRLGNFAEALLLFSELRSK-NLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGL 413
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
P+V T+ L+ G+ +E++ M + + PD Y + G GN
Sbjct: 414 CPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGN 467
>gi|255660950|gb|ACU25644.1| pentatricopeptide repeat-containing protein [Casselia glaziovii]
Length = 481
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 78/364 (21%), Positives = 153/364 (42%), Gaps = 14/364 (3%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G T + Y K R +A F + N+ ++ T T+N ++ + +G +
Sbjct: 110 GVERTIKSYDALFKVILRRGRFMMAKRYFNKMLNEGIEPTRHTFNVMIWGFFLSGKVETA 169
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
F D+K +I+P ++TYNTLI+ + R+ ++ E F E+K N+ P V TY LI
Sbjct: 170 NXFFEDMKSR-DITPDVITYNTLINGYYRVKKMEEAERYFVEMKGRNIEPTVITYTTLIK 228
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDG 328
GY++ + + MK + P+ TY LL G ++ + + I E+V ++
Sbjct: 229 GYVSVDRVDDALSLMEEMKGFGIKPNAITYSTLLPGLCNAEKMSEAQSILKEMVDKYIAP 288
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKI-EALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME 387
+ + +I K D + +A++RL E + +LI Y K + ++
Sbjct: 289 TDNSIFLKLISGQCKAGNLDAAADVLKAMIRLSVPTEAGHY--GVLIENYCKAEKYDKAV 346
Query: 388 KSINDAFEHKTSVTTVRIMRCIVSSY-----FRCN--AVDKLANFVKRAESAGWRLCRSL 440
++ E + + S+Y + C+ K V++ G + +L
Sbjct: 347 NLLDKLIEKDIILRPQSTLHMEPSAYNPMIEYLCDNGQTAKAETLVRQLMKLGVQEPTAL 406
Query: 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
++ + ++ + + +LK M K+D K + + +Y + L M
Sbjct: 407 -NTLIRGHSQEGSPDSAFELLKIMLRRKVDSEKSAYDSLVQSYLKKNEPADAKAALDSMI 465
Query: 501 KNGY 504
+NG+
Sbjct: 466 ENGH 469
>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
Length = 977
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ + NG + + +F +++ + I+P + +Y TLI F +L + + F E
Sbjct: 597 TYTVLMNGLVKNGKVNDAEEIFHEMRGKG-IAPDVFSYGTLIDGFSKLGNMQKASSIFDE 655
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + L+ NV YN L+ G+ + K +E+ M P+ TY ++ GY SG+
Sbjct: 656 MVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGD 715
Query: 312 LPRMEKIYELVK 323
L ++++ +K
Sbjct: 716 LAEAFQLFDEMK 727
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 5/176 (2%)
Query: 146 RQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNG 204
Q G T G+ G++N+ A ++F E K + + +Y L+ + G
Sbjct: 588 EQGILGDAKTYTVLMNGLVKNGKVND---AEEIFHEMRGKGIAPDVFSYGTLIDGFSKLG 644
Query: 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264
K S+F ++ +A ++ +++ YN L+ F R ++ + E+ PN TY
Sbjct: 645 NMQKASSIFDEMV-QAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTY 703
Query: 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+I GY + + +++ MK ++PD+ Y L+ G ++ R I+E
Sbjct: 704 CTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFE 759
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 5/138 (3%)
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
L+ Y G + S FR + E I TY L++ + V+ E F E++
Sbjct: 565 GLINEYCKKGKVIEACSAFRSMV-EQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRG 623
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
++P+VF+Y LI G+ K I+ M + + Y +LL G+ SG
Sbjct: 624 KGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSG---E 680
Query: 315 MEKIYELVKHHVDGKEFP 332
+EK EL+ + GK FP
Sbjct: 681 IEKAKELL-DEMSGKGFP 697
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 9/226 (3%)
Query: 98 DLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMT 155
DLD + ++ E G+ R N + L+K + R A+ VL R Q G
Sbjct: 435 DLDGAYNIVKEMGASGCR--PNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQ---GIAPD 489
Query: 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFR 214
Y I + +D A E K TY A + Y+ G +
Sbjct: 490 TFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVK 549
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
++ E + P+ V LI+ + + V +AF+ + + + + TY L+ G +
Sbjct: 550 EML-ECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKN 608
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
EEI+ M+ + PD +Y L+ G++ GN+ + I++
Sbjct: 609 GKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFD 654
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 91/215 (42%), Gaps = 11/215 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFR---D 215
YT + R+N+V+ A +F + +NAL+ G ++ + D
Sbjct: 738 YTTLVDGCCRLNDVERAITIFETNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMD 797
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ P+ VTYN +I + ++ + F ++ +NL P V TY L+ GY
Sbjct: 798 GSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMG 857
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE--LVKHHVDGK---E 330
++ ++ + A + PD Y +++ + G + + + K+ VD
Sbjct: 858 RRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLS 917
Query: 331 FPLIRAMICAYSKCSVTDRIKK-IEALMRL--IPE 362
RA++ ++K + +K +E ++RL IP+
Sbjct: 918 ISTCRALLSGFAKVGEMEVAEKVVENMVRLKYIPD 952
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 39/147 (26%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+E I+P YN+LI + +D + E+ ++ P+ FTY I+GY+ A +
Sbjct: 482 REQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEF 541
Query: 278 GKVEE-IYQMMKAG----------------------------------PVMPDTNTYLLL 302
++ + +M++ G ++ D TY +L
Sbjct: 542 ASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVL 601
Query: 303 LRGYAHSGNLPRMEKIYELVKHHVDGK 329
+ G +G + E+I+ H + GK
Sbjct: 602 MNGLVKNGKVNDAEEIF----HEMRGK 624
>gi|2244996|emb|CAB10416.1| salt-inducible protein homolog [Arabidopsis thaliana]
gi|7268388|emb|CAB78681.1| salt-inducible protein homolog [Arabidopsis thaliana]
Length = 777
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 27/371 (7%)
Query: 42 PNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDAR--VRKDLTQTVSALRDELLANV--- 96
PN + D+ +F + +T P+ V +L +T+ R+ +L NV
Sbjct: 199 PNEADVCDVITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMK 258
Query: 97 -----DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYG 151
DL+K ++ DE + + + + + P+ A+E W + + +G
Sbjct: 259 VFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVE---WFEKMSSFG 315
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQ 210
I GR NVD+A L+ A + + T++ L+ Y +G D C
Sbjct: 316 CEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCL 375
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+++ ++K + P++V YN LI GR + ++++ + +PN TY L+
Sbjct: 376 NIYEEMKA-LGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRA 434
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH----HV 326
Y A IY+ MK + Y LL A + ++ +I++ +K+
Sbjct: 435 YGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRHVDEAFEIFQDMKNCETCDP 494
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLE 384
D F ++I Y+ CS R+ K EA + I E + P L VL +I+ Y K ++
Sbjct: 495 DSWTF---SSLITVYA-CS--GRVSKAEAALLQIREAGFEPTLFVLTSVIQCYGKAKQVD 548
Query: 385 EMEKSINDAFE 395
++ ++ + E
Sbjct: 549 DVVRTFDQVLE 559
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 1/138 (0%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y ++ GR D A ++ E K L T+ YN LL N D+ +F+D+K
Sbjct: 428 YAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRHVDEAFEIFQDMK 487
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P T+++LI+V+ V EAA +I+++ P +F +I Y A
Sbjct: 488 NCETCDPDSWTFSSLITVYACSGRVSKAEAALLQIREAGFEPTLFVLTSVIQCYGKAKQV 547
Query: 278 GKVEEIYQMMKAGPVMPD 295
V + + + PD
Sbjct: 548 DDVVRTFDQVLELGITPD 565
>gi|255660902|gb|ACU25620.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 484
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G N
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLC---N 267
Query: 312 LPRMEKIYELVKHHVD 327
+M + ++K +D
Sbjct: 268 AEKMTEARSILKEMMD 283
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+TI +YNAL + G + F + E I P+ T+N +I F V+
Sbjct: 113 RTIKSYNALFXVILRRGRYMMAKRYFNKMLSEG-IEPTRHTFNVMIWGFFLSGKVETANR 171
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
F+++K +SP+V TYN +I GY + E+ + MK + P TY L++GY
Sbjct: 172 FFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGY 230
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G +G+ V+ A F + ++ + + TYN ++ Y ++ + F ++K
Sbjct: 159 GFFLSGK---VETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGR- 214
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
NI P++VTY TLI + + VD +E+K + PN TY+ L+ G A +
Sbjct: 215 NIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMTEA 274
Query: 281 EEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNL 312
I + M + P D + ++ L+ +SGNL
Sbjct: 275 RSILKEMMDKYLAPTDNSIFMRLISSQCNSGNL 307
>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
Length = 528
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 78/393 (19%), Positives = 151/393 (38%), Gaps = 37/393 (9%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C RR + F+E M G P +++ + G+ + +G++ G +
Sbjct: 153 GFCRARRVDEAHGFMEQMVAEGCHP----DIITYTALIGGF---CKSRDVGRGLELLGEV 205
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVT 228
D+ TY+ ++ G L D D+ +E + +P+ +T
Sbjct: 206 TRRGFTPDIV------------TYSTVIDGLCKAGRLRDAV-----DIFEEMSCAPTAIT 248
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN+LI + R +D ++ D +P+V TY L++ + E++Q M
Sbjct: 249 YNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMV 308
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
A + PD T+ L+ G G RME EL++ P I C +
Sbjct: 309 ANKLSPDVVTFTSLVDGLCGEG---RMEDALELLEEITRRGCPPTIYTYNCVVDGYCKAN 365
Query: 349 RIKKIEALMRLIPEKEYRP---WLNVLL---IRVYAKEDCLEEMEKSINDAFEHKTSVTT 402
+++K E L+ + + P N+L+ R + L+ +++ ++ TSV
Sbjct: 366 QVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAM 425
Query: 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
I I+ + R D F + G+ + + + + + ++ +L+
Sbjct: 426 YAI---ILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLE 482
Query: 463 EMENYKIDCSKKTFWIMYYAYATCGQRRKVNQV 495
EM Y T + AY G +K +++
Sbjct: 483 EMIKYGHTPGPGTCDAVVSAYCRAGMIQKADEL 515
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 10/156 (6%)
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL-----FRDLKKEANISP 224
+ VD A +L E ++ + NA+ + + +GL KC+ L + E +P
Sbjct: 88 DRVDDARELVEEMLHRGMAA----NAITYSALVDGLC-KCERLDEAVALVETMAERGCAP 142
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
++VTYN++I+ F R VD +++ P++ TY LI G+ + G+ E+
Sbjct: 143 TVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELL 202
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ PD TY ++ G +G L I+E
Sbjct: 203 GEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFE 238
>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 2/152 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R NV A +F E + L+ + TYN+L+ NG D+ L +D + P++
Sbjct: 311 RDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGL-QDKMSGMGLKPNV 369
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTYN LI+ F + ++ +I L+PNV T+N LI Y A + M
Sbjct: 370 VTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSM 429
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
M V P+ +TY L+ G+ GN+ K+
Sbjct: 430 MLDTGVCPNVSTYNCLIVGFCREGNVKEARKL 461
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/320 (20%), Positives = 127/320 (39%), Gaps = 50/320 (15%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T++ ++ G K + D+K SPS++TYNT+I + + + +A +E
Sbjct: 231 TFDVVINGLCKVGKFQKAGDVVEDMKAWG-FSPSVITYNTIIDGYCKAGKMFKADALLKE 289
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + PN T+N LI G+ +++++ M+ + P+ TY L+ G +G
Sbjct: 290 MVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGK 349
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
L + D++ M L P NV
Sbjct: 350 LDE----------------------------ALGLQDKMSG----MGLKP--------NV 369
Query: 372 L----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
+ LI + K+ L+E + ++D + V ++ +Y + +D F+
Sbjct: 370 VTYNALINGFCKKKMLKEAREMLDD-IGKRGLAPNVITFNTLIDAYGKAGRMDDA--FLL 426
Query: 428 RAESAGWRLCR--SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
R+ +C S Y+ +V + + V+E + KEME + T+ I+ A
Sbjct: 427 RSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCK 486
Query: 486 CGQRRKVNQVLGLMCKNGYD 505
G+ RK ++L M + G +
Sbjct: 487 KGETRKAVRLLDEMFEVGLN 506
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 168 RINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R NV A L E LK + TYN L+ A G + K L ++ E ++PS
Sbjct: 451 REGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMF-EVGLNPSH 509
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQE---IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE- 282
+TYN LI + R + AA ++ N+ TYN LI G+ GK+EE
Sbjct: 510 LTYNALIDGYFR---EGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNK---GKLEEA 563
Query: 283 ---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
+ +M++ G ++P+ TY +L G +P ++
Sbjct: 564 NRLLNEMLEKG-LIPNRTTYDILRDEMMEKGFIPDID 599
>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
Length = 730
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 76/140 (54%), Gaps = 2/140 (1%)
Query: 172 VDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
+DLA + +E KH + + TY+ ++ Y G D+ +LF ++K A+I V+YN
Sbjct: 228 MDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKF-ASIGLDRVSYN 286
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
TL+S++ +L + +E++ S + + TYN L+ GY + +V+ +++ MKA
Sbjct: 287 TLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAE 346
Query: 291 PVMPDTNTYLLLLRGYAHSG 310
+ P+ TY L+ Y+ G
Sbjct: 347 RIFPNLLTYSTLIDVYSKGG 366
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 120/276 (43%), Gaps = 24/276 (8%)
Query: 45 SFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFR 104
+F LC +T LL E D+ ++ +L T +A+ D D ++
Sbjct: 140 NFESRLCGSDDYTF------LLRELGNRGDSGLKPNLV-TYNAVIDACGKGGVDFNRAAE 192
Query: 105 VLDEK---GSCLFRR-HSNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEE 158
+ DE L+R + + + L+ + G + LA ++++ R+ +T
Sbjct: 193 IFDEMNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYST 252
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG----TYNALLGAYMYNGLSDKCQSLFR 214
G AGR+ D A +LF E +IG +YN LL Y G ++ ++ +
Sbjct: 253 VIDGYAKAGRL---DEALNLFNEM---KFASIGLDRVSYNTLLSIYAKLGRFEEALNVCK 306
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
+++ + I VTYN L+ +G+ + ++ F+E+K + PN+ TY+ LI Y
Sbjct: 307 EMES-SGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKG 365
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
++ + E+++ K + D Y L+ +G
Sbjct: 366 GLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNG 401
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 123/292 (42%), Gaps = 23/292 (7%)
Query: 192 TYNALLGAYMYNGLS-DKCQSLFRDLKKEA-----NISPSIVTYNTLISVFGRLLLVDHM 245
TYNA++ A G+ ++ +F ++ + I I TYNTL+ + M
Sbjct: 172 TYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAVCK---GGQM 228
Query: 246 EAAFQ---EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
+ AFQ E+ ++ PNV TY+ +I GY A + ++ MK + D +Y L
Sbjct: 229 DLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTL 288
Query: 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE 362
L YA G + + ++ K+ A++ Y K + +K++ M
Sbjct: 289 LSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEM----- 343
Query: 363 KEYRPWLNVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA 418
K R + N+L LI VY+K +E + + F+ V + ++ + +
Sbjct: 344 KAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFRE-FKKAGLKADVVLYSALIDALCKNGL 402
Query: 419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE-MESVLKEMENYKI 469
V+ +F+ G R Y+S + + VE+ ES + + E+ +I
Sbjct: 403 VESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATESEVGDKEDNQI 454
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 175 AADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A ++F E LK + Y+AL+ A NGL + S ++ KE I P++VTYN++I
Sbjct: 371 AMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEG-IRPNVVTYNSII 429
Query: 234 SVFGRLLLVDHMEAAFQEIKD 254
FGR +V+ +A E+ D
Sbjct: 430 DAFGRSGIVE--DATESEVGD 448
>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
Query: 159 YTKGIKFAG--RINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRD 215
YT G+ G + + ++ LF E ++L+ YN L+ AY NG + + L D
Sbjct: 597 YTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDD 656
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
++ + I P+ TY++LI + ++ + E++ L PNV Y LI GY
Sbjct: 657 MRSKG-IPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLG 715
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK-IYELVKHHV 326
KV + Q M + + P+ TY +++ GY+ SG++ K ++E+V +
Sbjct: 716 QMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGI 767
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T TY++L+ G + + L +++KE + P++V Y LI + +L +D +
Sbjct: 665 TTATYSSLIHGMCNIGRMEDAKCLIDEMRKEG-LLPNVVCYTALIGGYCKLGQMDKVVNV 723
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
QE+ ++ PN TY +I GY + ++ M ++PDT TY +L G+
Sbjct: 724 LQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCK 783
Query: 309 SGNLPRMEKI 318
G + KI
Sbjct: 784 EGKIEEGFKI 793
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ G ++ L ++ K+ I P TYN LI R+ +D + E
Sbjct: 528 TYNTLISGCCKEGKVEEGFKLRGEMVKQG-IEPDTFTYNLLIHGMCRIGKLDEAVNLWNE 586
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
K +L PNV+TY +I GY A + E+++ + + ++ Y L+R Y +GN
Sbjct: 587 CKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGN 646
Query: 312 LPRMEKIYE 320
K+++
Sbjct: 647 TVEAFKLHD 655
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 7/165 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ G D+ +L+ + K ++ P++ TY +I + + ++ E F E
Sbjct: 563 TYNLLIHGMCRIGKLDEAVNLWNECKSR-DLVPNVYTYGVMIDGYCKADKIEEGEKLFTE 621
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ NL N YN LI Y + +++ M++ + P T TY L+ G N
Sbjct: 622 LLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMC---N 678
Query: 312 LPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKI 353
+ RME L+ P + A+I Y K D++ +
Sbjct: 679 IGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNV 723
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 56/300 (18%), Positives = 116/300 (38%), Gaps = 9/300 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ +G D+ + K+ ++ +++TY+ LI+ +L + + +E
Sbjct: 283 TYNNLIHGLCKHGNLDEAFRFKEKMVKDG-VNATLITYSVLINGLMKLEKFNEANSVLKE 341
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +PN YN LI GY G I M + + P++ T +++G+ G
Sbjct: 342 TLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQ 401
Query: 312 LPRMEKIYELV---KHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ + E I E + ++ F I +C S+ R + L + P
Sbjct: 402 MEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTT 461
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
L L + D +E + + F T ++ + + + +K+
Sbjct: 462 LVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNA-----LIHGLCKTGNMQEAVRLLKK 516
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
G+ L + Y++ + + +VEE + EM I+ T+ ++ + G+
Sbjct: 517 MLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGK 576
>gi|255660868|gb|ACU25603.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 484
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E++ ++ + + +I ++ K D + +A++RL
Sbjct: 271 MSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320
>gi|147819856|emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]
Length = 494
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 121/263 (46%), Gaps = 23/263 (8%)
Query: 166 AGRINNVDLAA--DLFAEAAN------KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
A R +DL A + A+A N + KT TY ALL Y + DK LF+ LK
Sbjct: 97 ADRAIRIDLLAKTEGIAQAENYFNSLQESAKTNKTYGALLNCYCKENMVDKAVELFKKLK 156
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E N S ++YN +IS++ R+ + + + E+++ ++ +++TYN L+ Y + +
Sbjct: 157 -ELNFVSSALSYNNMISLYLRVGQPEKVPSLVHEMEEKDIPADLYTYNLLMNSYASVKDF 215
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
VE++ + MK V D TY L Y +G+ + + ++ + + + R +
Sbjct: 216 EAVEQVLEKMKKRGVERDWFTYGNLANIYVDAGHTKKANYALQKLEQNKNLHDPEAFRML 275
Query: 338 ICAYSKCSVTDRIKKI-EALMRLIPEKEYRPWLNVLLI-----RVYAKEDCLEEMEKSIN 391
I Y++ S + + + E+L P+ + +L +LL V E C +E
Sbjct: 276 INLYARTSNLEGVNRAWESLKLAHPKINNKSYLIMLLALSKLGDVAGLEKCFKE------ 329
Query: 392 DAFEHKTSVTTVRIMRCIVSSYF 414
+E S VR+ ++ SY
Sbjct: 330 --WESGCSTYDVRLSNVMLESYL 350
>gi|115473997|ref|NP_001060597.1| Os07g0671200 [Oryza sativa Japonica Group]
gi|22831126|dbj|BAC15987.1| putative crp1(chloroplast RNA processing 1) protein [Oryza sativa
Japonica Group]
gi|113612133|dbj|BAF22511.1| Os07g0671200 [Oryza sativa Japonica Group]
Length = 551
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 74/353 (20%), Positives = 140/353 (39%), Gaps = 42/353 (11%)
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQ 210
TP++ G +GR+ + A L E +K YN+LL AY D+
Sbjct: 142 TPLSASVVVDGYCKSGRVAH---ARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVA 198
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+ + ++ E I P++ TY L+ + +EA F+E+K NLS +V+ Y+ +I
Sbjct: 199 EMLKVMENEG-IEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINA 257
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
Y A + E++ + P+ +TY L+ G+ G + E + ++ G
Sbjct: 258 YCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGIN 317
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI 390
+ MI Y + ++ D+ +I+ +M E+M +
Sbjct: 318 QIVFNTMIDGYCRKNMVDKALEIKMIM--------------------------EKMGIEL 351
Query: 391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450
D + + T +R R N +D+ N ++ G R Y + + ++ +
Sbjct: 352 -DVYTYNTLACGLR----------RANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCN 400
Query: 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ + E + +EM + S T+ +M Y G R+ + M K G
Sbjct: 401 EGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKG 453
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 1/152 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L D+ ++L R + E + P+ V+Y TLIS+ + F+E
Sbjct: 355 TYNTLACGLRRANRMDEAKNLLR-IMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFRE 413
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + P++ TYN ++ GY+ + E M+ ++PD +Y L+ G+ +G
Sbjct: 414 MAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGK 473
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+ +++E +K A+I +K
Sbjct: 474 VDVALRLFEEMKQRGSKPNLVAYTALISGLAK 505
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y L+ + G + + LFR++ PS+VTYN ++ + + + E E
Sbjct: 390 SYTTLISIHCNEGDMVEARRLFREMAGNG-AEPSLVTYNVMMDGYIKKGSIREAERFKNE 448
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAH 308
++ L P++++Y L+ G+ + GKV+ +++ MK P+ Y L+ G A
Sbjct: 449 MEKKGLVPDIYSYAALVHGH---CVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAK 505
Query: 309 SGNLPRMEKIYEL 321
G R E+ ++L
Sbjct: 506 EG---RSEEAFQL 515
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 9/136 (6%)
Query: 178 LFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS-- 234
LF E A N ++ TYN ++ Y+ G + + +++K+ + P I +Y L+
Sbjct: 410 LFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKG-LVPDIYSYAALVHGH 468
Query: 235 -VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V G+ VD F+E+K PN+ Y LI+G + ++Y M +
Sbjct: 469 CVNGK---VDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLT 525
Query: 294 PDTNTYLLLLRGYAHS 309
PD Y L+ G H+
Sbjct: 526 PDDALYSALV-GSLHT 540
>gi|357499665|ref|XP_003620121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495136|gb|AES76339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 408
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 106/243 (43%), Gaps = 27/243 (11%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
VD A DL+ E K + + TYNA++ + G LF D+K E N+ T+N
Sbjct: 170 VDDAFDLYTEMVAKRVSPDVFTYNAMIYGFCVVGRLKDAIGLFNDMKLE-NVEADEYTFN 228
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI------- 283
TL+S F + V +A + + P++ TYN L+ GY K + I
Sbjct: 229 TLVSAFCKEGNVREGKAVVAVMMKEGVKPDIITYNSLMDGYCLVKEVDKAKNIFNTMVQR 288
Query: 284 -----------YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHVDGKEF 331
+Q M ++PDT Y L+ G+ SG +P+ +E + E+ H G+
Sbjct: 289 GVTANVRTMNLFQEMHCKEIIPDTIAYSSLIDGFCKSGRIPQALELVDEM---HDRGQPP 345
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKS 389
+I Y+ C + ++K AL+R I K +P + +L K+ LEE +
Sbjct: 346 NIITYNSILYALCKI-HHVEKTIALLRKIKVKGIQPDAYTYTILTNGLFKDGRLEEAREI 404
Query: 390 IND 392
D
Sbjct: 405 FPD 407
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 1/140 (0%)
Query: 173 DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
++ + F++ + H +Y L+ G + L +++ E + +V Y +
Sbjct: 102 NVLINCFSQLGHTHFLDRVSYETLINGLCKVGETRAALRLLKEVN-EKIVQYDVVMYTAI 160
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I+ + LVD + E+ +SP+VFTYN +I G+ ++ MK V
Sbjct: 161 INGLCKDKLVDDAFDLYTEMVAKRVSPDVFTYNAMIYGFCVVGRLKDAIGLFNDMKLENV 220
Query: 293 MPDTNTYLLLLRGYAHSGNL 312
D T+ L+ + GN+
Sbjct: 221 EADEYTFNTLVSAFCKEGNV 240
>gi|255660882|gb|ACU25610.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
Length = 484
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E++ ++ + + +I ++ K D + +A++RL
Sbjct: 271 MSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320
>gi|255660884|gb|ACU25611.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 484
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEX 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E++ ++ + + +I ++ K D + +A++RL
Sbjct: 271 MSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 107/225 (47%), Gaps = 8/225 (3%)
Query: 102 VFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTK 161
+F + ++G L R N A V+ + G + A EVL + + P T Y
Sbjct: 588 IFHAMKQQGFALDARAYN--AVVDGFCKSGKLDK-AYEVLEEMKVKR---VPPTVATYGS 641
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
I +I+ +D A LF EA +K ++ + Y++L+ + G D+ + ++ K+
Sbjct: 642 IIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKG 701
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
++P++ T+N+L+ + ++ FQ +K+ SPN +TY+ LI G + K
Sbjct: 702 -LTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKA 760
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
+Q M+ ++P+ TY ++ G A GN+ ++E K +
Sbjct: 761 FVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKAN 805
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 74/163 (45%), Gaps = 2/163 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I G++ +D A + E K L + T+N+L+ A + ++ F+ +K
Sbjct: 674 YSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMK 733
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E SP+ TY+ LI+ R+ + +QE++ L PNV TY +IAG
Sbjct: 734 -EMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNI 792
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+++ KA PD ++ L+ G +H+ ++E
Sbjct: 793 TDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFE 835
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 84/199 (42%), Gaps = 11/199 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I G+ NVD A LF + H Y +L+ + +G + +F+++
Sbjct: 464 YCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMN 523
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ P + NT + + V+ A F++IK P+V +Y+ LI G A
Sbjct: 524 RRG-CQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQA 582
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+ I+ MK D Y ++ G+ SG +++K YE++ +E + R
Sbjct: 583 RETSSIFHAMKQQGFALDARAYNAVVDGFCKSG---KLDKAYEVL------EEMKVKRVP 633
Query: 338 ICAYSKCSVTDRIKKIEAL 356
+ S+ D + KI+ L
Sbjct: 634 PTVATYGSIIDGLAKIDRL 652
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 90/464 (19%), Positives = 167/464 (35%), Gaps = 73/464 (15%)
Query: 99 LDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGY--GTPMTK 156
LD RV+ FR + Y + +P ALE+L + ++ GY G P+
Sbjct: 163 LDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALELLR-QMQEVGYEVGVPL-- 219
Query: 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRD 215
+T ++ R V+ A L E L+ I YN + + G D F +
Sbjct: 220 --FTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHE 277
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
LK + + P V+Y ++I V + + E F +++ P + YN +I GY +A
Sbjct: 278 LKSQG-LKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAG 336
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD--GKEFPL 333
+ ++ +K +P ++ +L + ++E +K + + +
Sbjct: 337 QFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAEPNSSTYNI 396
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA 393
I M+C K I+ L P N+L + + C + + +
Sbjct: 397 IIDMLCMAGKVEEAYMIRDEMEHAGLFP--------NLLTVNIMVDRLCKAKKFEPAYEM 448
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL----YHSKMVMYA 449
FE T C +S C+ +D L K +RL ++ +++ V+Y
Sbjct: 449 FE------TASQRGCNPNSVTYCSLIDGLGK--KGNVDDAYRLFENMLDTGHNANPVVYT 500
Query: 450 S-------QRRVEEMESVLKEME-----------NYKIDCSKK----------------- 474
S R E+ + KEM N +DC K
Sbjct: 501 SLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGY 560
Query: 475 -------TFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
++ I+ + GQ R+ + + M + G+ + A+
Sbjct: 561 GFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAY 604
>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 805
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 12/194 (6%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN-----VDLAADLFAEAANKHLKTIG 191
AL + + RR+ G T+ Y + GR+ V L AD+ A T
Sbjct: 202 ALRLFDELRRE---GVAPTRVTYNVVLDVYGRMGRSWPRVVALLADMRAAGVEPDGFTAS 258
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T A G +GL D+ + F DLK + +P +VTYN L+ VFG+ +E
Sbjct: 259 TVIAAAG---RDGLVDEAVAFFEDLKARGH-APCVVTYNALLQVFGKAGNYTEALRVLRE 314
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++D+ P+ TYN L Y A + + + M ++P+T TY ++ Y ++G
Sbjct: 315 MEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNAGK 374
Query: 312 LPRMEKIYELVKHH 325
+ +++ +K +
Sbjct: 375 VDEALALFDRMKKN 388
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 66/145 (45%), Gaps = 8/145 (5%)
Query: 163 IKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
I AGR VD A F + A H + TYNALL + G + + R+++ +A
Sbjct: 261 IAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLREME-DAG 319
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
P VTYN L + R + L PN FTYN ++ Y A GKV+
Sbjct: 320 CKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTIMTAYGNA---GKVD 376
Query: 282 E---IYQMMKAGPVMPDTNTYLLLL 303
E ++ MK +P TNTY L+L
Sbjct: 377 EALALFDRMKKNGFIPYTNTYNLVL 401
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 12/193 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N LL G+ + +K + TYNTLI +GR + + E
Sbjct: 431 TWNTLLAVCGKRGMESYVTRVLEGMKS-CKVELCRDTYNTLICAYGRCGSRANAFKMYDE 489
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + +P + TYN L+ W I MK+ P+ +Y LLL+ +A GN
Sbjct: 490 MTAAGFAPCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPNDMSYSLLLQCHAKGGN 549
Query: 312 LPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+E I K G FP ++R ++ A KC R++ IE + + + ++P
Sbjct: 550 AAGIEAIE---KEVYQGNIFPSWVILRTLVIANFKCR---RLEGIERAFQEVKARGHKPD 603
Query: 369 LNVL--LIRVYAK 379
L +L ++ +YAK
Sbjct: 604 LVILNSMLSIYAK 616
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 20/159 (12%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218
Y+K ++ I + L+ DL TYN+L+ Y + + + + L+
Sbjct: 620 YSKAMEMFESIEQLGLSPDLI------------TYNSLMDMYAKSNEPWEAEKILNRLRS 667
Query: 219 EAN--------ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+ + P +V+YNT+I+ F + L+ + E+ ++P V TY+ L+ G
Sbjct: 668 SQSQQQQQQQQLKPDVVSYNTVINGFCKEGLIKEAQRVLSEMIADGVAPCVITYHTLVGG 727
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
Y + M+ + E+ M + P TY ++ Y +
Sbjct: 728 YASREMFAEAREVVGYMIQRKLKPMELTYRRVVDSYCRA 766
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 64/127 (50%), Gaps = 1/127 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y+ LL + G + +++ +++ + NI PS V TL+ + ++ +E AFQE
Sbjct: 536 SYSLLLQCHAKGGNAAGIEAIEKEVY-QGNIFPSWVILRTLVIANFKCRRLEGIERAFQE 594
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K P++ N +++ Y ++ K E+++ ++ + PD TY L+ YA S
Sbjct: 595 VKARGHKPDLVILNSMLSIYAKNGLYSKAMEMFESIEQLGLSPDLITYNSLMDMYAKSNE 654
Query: 312 LPRMEKI 318
EKI
Sbjct: 655 PWEAEKI 661
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 61/158 (38%), Gaps = 9/158 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L G+Y G + D + P+ TYNT+++ +G VD A F
Sbjct: 326 TYNELAGSYARAGFYQEAAKCI-DTMIGKGLLPNTFTYNTIMTAYGNAGKVDEALALFDR 384
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K + P TYN ++ + + E+ M P+ T+ LL G
Sbjct: 385 MKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCGKRG- 443
Query: 312 LPRMEKIYELVKHHVDGKEFPLIR----AMICAYSKCS 345
ME V + + L R +ICAY +C
Sbjct: 444 ---MESYVTRVLEGMKSCKVELCRDTYNTLICAYGRCG 478
>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic [Vitis vinifera]
Length = 1022
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
Query: 159 YTKGIKFAG--RINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRD 215
YT G+ G + + ++ LF E ++L+ YN L+ AY NG + + L D
Sbjct: 664 YTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDD 723
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
++ + I P+ TY++LI + ++ + E++ L PNV Y LI GY
Sbjct: 724 MRSKG-IPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLG 782
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK-IYELVKHHV 326
KV + Q M + + P+ TY +++ GY+ SG++ K ++E+V +
Sbjct: 783 QMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGI 834
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T TY++L+ G + + L +++KE + P++V Y LI + +L +D +
Sbjct: 732 TTATYSSLIHGMCNIGRMEDAKCLIDEMRKEG-LLPNVVCYTALIGGYCKLGQMDKVVNV 790
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
QE+ ++ PN TY +I GY + ++ M ++PDT TY +L G+
Sbjct: 791 LQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCK 850
Query: 309 SGNL 312
G +
Sbjct: 851 EGKI 854
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ G ++ L ++ K+ I P TYN LI R+ +D + E
Sbjct: 595 TYNTLISGCCKEGKVEEGFKLRGEMVKQG-IEPDTFTYNLLIHGMCRIGKLDEAVNLWNE 653
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
K +L PNV+TY +I GY A + E+++ + + ++ Y L+R Y +GN
Sbjct: 654 CKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGN 713
Query: 312 LPRMEKIYE 320
K+++
Sbjct: 714 TVEAFKLHD 722
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 7/165 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ G D+ +L+ + K ++ P++ TY +I + + ++ E F E
Sbjct: 630 TYNLLIHGMCRIGKLDEAVNLWNECKSR-DLVPNVYTYGVMIDGYCKADKIEEGEKLFTE 688
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ NL N YN LI Y + +++ M++ + P T TY L+ G N
Sbjct: 689 LLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMC---N 745
Query: 312 LPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKI 353
+ RME L+ P + A+I Y K D++ +
Sbjct: 746 IGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNV 790
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 56/300 (18%), Positives = 116/300 (38%), Gaps = 9/300 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ +G D+ + K+ ++ +++TY+ LI+ +L + + +E
Sbjct: 350 TYNNLIHGLCKHGNLDEAFRFKEKMVKDG-VNATLITYSVLINGLMKLEKFNEANSVLKE 408
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +PN YN LI GY G I M + + P++ T +++G+ G
Sbjct: 409 TLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQ 468
Query: 312 LPRMEKIYELV---KHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ + E I E + ++ F I +C S+ R + L + P
Sbjct: 469 MEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTT 528
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
L L + D +E + + F T ++ + + + +K+
Sbjct: 529 LVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNA-----LIHGLCKTGNMQEAVRLLKK 583
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
G+ L + Y++ + + +VEE + EM I+ T+ ++ + G+
Sbjct: 584 MLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGK 643
Score = 38.5 bits (88), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 17/151 (11%)
Query: 175 AADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F ANK + T+ T LL + + +K +F +++ +SP + ++T I
Sbjct: 263 AIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQ--GVSPDVYLFSTAI 320
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY----QMMKA 289
+ F + V+ F +++ +SPNV TYN LI G G ++E + +M+K
Sbjct: 321 NAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKH---GNLDEAFRFKEKMVKD 377
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
G V TY +L+ G L ++EK E
Sbjct: 378 G-VNATLITYSVLING------LMKLEKFNE 401
>gi|15240649|ref|NP_199839.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170477|sp|Q9FGR7.1|PP426_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g50280, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 1006; Flags: Precursor
gi|9759030|dbj|BAB09399.1| unnamed protein product [Arabidopsis thaliana]
gi|332008538|gb|AED95921.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 723
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 5/156 (3%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
N+++ LF E +K LK + TYN L+ AY D ++L R+++ + + P++ +
Sbjct: 393 NHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREME-DLGLEPNVKS 451
Query: 229 YNTLISVFGRLLLVDHMEA-AFQEIKDSNLSPNVFTYNYLIAGY-MTAWMWGKVEEIYQM 286
Y LIS +GR + M A AF +K L P+ +Y LI Y ++ W +M
Sbjct: 452 YTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEM 511
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
K G + P TY +L + SG+ ++ +I++L+
Sbjct: 512 CKEG-IKPSVETYTSVLDAFRRSGDTGKLMEIWKLM 546
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 133/334 (39%), Gaps = 56/334 (16%)
Query: 177 DLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
++F + + K +K + + L+ ++ GL ++ + +++K+ S +IV YNTL+
Sbjct: 330 EIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIV-YNTLMDA 388
Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
+ + ++ +E F E++D L P+ TYN L+ Y VE + + M+ + P+
Sbjct: 389 YNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPN 448
Query: 296 TNTYLLLLRGYAHSGNLP--------RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347
+Y L+ Y + + RM+K+ H A+I AYS
Sbjct: 449 VKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHS-------YTALIHAYSVSG-- 499
Query: 348 DRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM-EKSINDAFEHKTSVTTVRIM 406
W + YA EEM ++ I + E TSV
Sbjct: 500 --------------------WHE----KAYA---SFEEMCKEGIKPSVETYTSV------ 526
Query: 407 RCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466
+ ++ R KL K + R Y++ + +A Q E V+ E
Sbjct: 527 ---LDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSK 583
Query: 467 YKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
+ S T+ ++ AYA GQ K+ Q+L M
Sbjct: 584 MGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMA 617
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
Query: 179 FAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
F E + +K ++ TY ++L A+ +G + K +++ + +E I + +TYNTL+ F
Sbjct: 508 FEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLRE-KIKGTRITYNTLLDGFA 566
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN 297
+ L E L P+V TYN L+ Y K+ ++ + M A + PD+
Sbjct: 567 KQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSI 626
Query: 298 TYLLLLRGYAHSGNLPR 314
TY ++ + + R
Sbjct: 627 TYSTMIYAFVRVRDFKR 643
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN LL + GL + + + + K + PS++TYN L++ + R + +E
Sbjct: 557 TYNTLLDGFAKQGLYIEARDVVSEFSK-MGLQPSVMTYNMLMNAYARGGQDAKLPQLLKE 615
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
+ NL P+ TY+ +I ++ + + ++MM +PD +Y
Sbjct: 616 MAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPDPRSY 663
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 59/291 (20%), Positives = 114/291 (39%), Gaps = 14/291 (4%)
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
+ L ++ GR + D++ + D +V YN I+G + + E+Y+ M
Sbjct: 242 SVLFTLLGRERMADYILLLLSNLPDKEEFRDVRLYNAAISGLSASQRYDDAWEVYEAMDK 301
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
V PD T +L+ +G + +++E+ + + K + + K S D
Sbjct: 302 INVYPDNVTCAILITTLRKAGRSAK--EVWEIFEKMSE-KGVKWSQDVFGGLVK-SFCDE 357
Query: 350 IKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDAFEH--KTSVTTV 403
K EAL+ ++ N + L+ Y K + +EE+E + + K S T
Sbjct: 358 GLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATY 417
Query: 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES-VLK 462
I+ + +Y R D + ++ E G Y + Y +++ +M +
Sbjct: 418 NIL---MDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFL 474
Query: 463 EMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
M+ + S ++ + +AY+ G K MCK G V + S
Sbjct: 475 RMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYTS 525
>gi|255660890|gb|ACU25614.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 484
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E++ ++ + + +I ++ K D + +A++RL
Sbjct: 271 MSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMVRL 320
>gi|302817236|ref|XP_002990294.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
gi|300141856|gb|EFJ08563.1| hypothetical protein SELMODRAFT_131439 [Selaginella moellendorffii]
Length = 1139
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 4/164 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y IK R + A D ++ N L+ ++ TY+ ++ + +G + + +F+DLK
Sbjct: 864 YNTIIKADLRPGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFKDLK 923
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
A P Y+ +++ + + + +H F+ +K L P+ +YN LI Y A +
Sbjct: 924 S-AGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMKLRGLRPHEVSYNNLIDAYARAGQF 982
Query: 278 GKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
K E++ +M KAG P + T+LLL+ YAH G E E
Sbjct: 983 AKAEQLLVEMAKAG-CPPSSVTFLLLISAYAHRGKCNEAENALE 1025
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 132/310 (42%), Gaps = 24/310 (7%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+ Q F +K + + PS++ Y+ L+ V+GR + EAAFQE+ D L P+ ++ +
Sbjct: 254 EAQEFFAWMKLQLSYIPSVIVYSMLLKVYGRDKQIGLAEAAFQEMLDQKLDPDEVAFSTM 313
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHV 326
I Y A M+ ++ +Y+ M + ++P + TY +L + L ++E LV+ V
Sbjct: 314 ILNYANAEMFDEMLTMYEAMMSRGIVPSSVTYTTMLIHLNKAERLADAALLWEDLVEESV 373
Query: 327 DGKEFPLIRA-MICAYSKCS-VTDRIKKIEALMRL--IPEKE-YRPWLNVL--LIRVYAK 379
+ PL A MI Y K + ++ EA++ P+ Y L++L L R
Sbjct: 374 ELS--PLAYALMITIYRKLGRFEEALEVFEAMLGAGYYPDSLIYNMVLHMLGKLGRYDEA 431
Query: 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC-- 437
D M++ E TS + M I C DK + C
Sbjct: 432 VDVFTAMQRQ-----ELCTSKYSYATMLHI------CEKADKFELAASIFSDMQMKRCPV 480
Query: 438 -RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
+Y S + +Y +E E + +EM ++ KTF +M G+ + QV+
Sbjct: 481 DEVVYTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKYNEAVQVM 540
Query: 497 GLMCKNGYDV 506
+ G ++
Sbjct: 541 EELLAKGLNL 550
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 80/175 (45%), Gaps = 6/175 (3%)
Query: 166 AGRINN-VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
AG+ N V + +L A+ N L + + LL Y+ G ++ F+ L E+ I+
Sbjct: 530 AGKYNEAVQVMEELLAKGLN--LDDMA-WKTLLHCYVKAGNVERATKTFKTLV-ESGIA- 584
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
++ YN ++S++ +++ + FQ++K S++ P+ + ++ Y A M EE+
Sbjct: 585 DLMAYNDVLSLYAEFDMLEDAKLLFQQLKSSSIQPDQVWFGTMVKLYCNANMVAAAEEVL 644
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
+ M+ PD T +L+ Y + + + E + + + R +C
Sbjct: 645 RQMREKGFTPDHITQGILINAYGEANRIEEAAGLLEASAKEDESEAAAISRIYLC 699
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 175 AADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
AADLF + L+ +YN L+ AY G K + L ++ K A PS VT+ LI
Sbjct: 950 AADLFEAMKLRGLRPHEVSYNNLIDAYARAGQFAKAEQLLVEMAK-AGCPPSSVTFLLLI 1008
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
S + + E A + ++ + + P V YN ++ + A + + E Y M+ +
Sbjct: 1009 SAYAHRGKCNEAENALERMQTAAIRPTVRHYNEVMLAFSRARLPRQAMESYLKMERSGIQ 1068
Query: 294 PDTNTYLLLLR 304
PD + ++R
Sbjct: 1069 PDVVSSRTMIR 1079
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 74/163 (45%), Gaps = 2/163 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLK 217
Y + G++ D A D+F + L T +Y +L + S+F D++
Sbjct: 415 YNMVLHMLGKLGRYDEAVDVFTAMQRQELCTSKYSYATMLHICEKADKFELAASIFSDMQ 474
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ +V Y ++IS++G+ L D E FQE+ + L +V T++ + + A +
Sbjct: 475 MKRCPVDEVV-YTSVISIYGKAGLYDEAEKLFQEMNELRLLVDVKTFSVMANVRLKAGKY 533
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ ++ + + A + D + LL Y +GN+ R K ++
Sbjct: 534 NEAVQVMEELLAKGLNLDDMAWKTLLHCYVKAGNVERATKTFK 576
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 46/98 (46%)
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
IV YNT+I R + + + + L P++ TY+ +I+ + + E++++
Sbjct: 861 IVAYNTIIKADLRPGRLKKAIDTYSSLTNLGLRPSLQTYDTMISVFAKSGRTRDAEKMFK 920
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+K+ PD Y ++ YA SG ++E +K
Sbjct: 921 DLKSAGFQPDEKVYSQMMNCYAKSGMYEHAADLFEAMK 958
>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
Length = 1114
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G+ D A LF + ++ + TY+ L+ G D+ FR+LK E+ ++P
Sbjct: 939 GKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFRELK-ESGLNPD 997
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDS-NLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
+V YN +I+ G+ ++ F E+K S ++P+++TYN LI A M + +IY
Sbjct: 998 VVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIY 1057
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
++ + P+ T+ L+RGY+ SG + E Y + + V G P
Sbjct: 1058 NEIQRAGLEPNVFTFNALIRGYSLSG---KPEHAYAVYQTMVTGGFSP 1102
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
LF ++KK I+P + TYN+LI G +V+ + EI+ + L PNVFT+N LI GY
Sbjct: 1020 LFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGY 1079
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
+ +YQ M G P+T TY
Sbjct: 1080 SLSGKPEHAYAVYQTMVTGGFSPNTGTY 1107
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/356 (22%), Positives = 145/356 (40%), Gaps = 27/356 (7%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219
I+++ + NN A LF E K L + TYN L+G + + + Q +F +K
Sbjct: 758 IRYSFKHNNASGARMLF-EKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNT 816
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
I P + TYN L+ +G+ +D + ++E+ PN T+N +I+G + A G
Sbjct: 817 GCI-PDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKA---GN 872
Query: 280 VEEI----YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
V++ Y +M P TY L+ G + SG L ++++E + + +
Sbjct: 873 VDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYN 932
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE 395
+I + K D AL + + ++ RP L + V DCL M +++
Sbjct: 933 ILINGFGKAGEADAAC---ALFKRMVKEGVRPDLKTYSVLV----DCLC-MVGRVDEGLH 984
Query: 396 HKTSVTTVRIMRCIVSSYFRCNAVDK-------LANFVKRAESAGWRLCRSLYHSKMVMY 448
+ + + +V N + K L F + +S G Y+S ++
Sbjct: 985 YFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNL 1044
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
VEE + E++ ++ + TF + Y+ G+ V M G+
Sbjct: 1045 GIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGF 1100
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/374 (19%), Positives = 157/374 (41%), Gaps = 19/374 (5%)
Query: 98 DLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMT 155
D++ V +L E + + N Y F ++ LG ++ A E+L R G G +
Sbjct: 240 DIESVMGLLKEMETLGLK--PNVYTFTICIRVLGRAGKINEAYEILK-RMDDEGCGPDVV 296
Query: 156 KEEYTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFR 214
YT I +D A ++FA+ +H TY LL + N D +
Sbjct: 297 T--YTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWS 354
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
+++K+ ++ P +VT+ L+ + A ++D + PN+ TYN LI G +
Sbjct: 355 EMEKDGHV-PDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRV 413
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
EI+ M++ V P TY++ + Y SG+ + +E +K
Sbjct: 414 HRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVAC 473
Query: 335 RAMICAYSKCSVTDRIKKIEALMR---LIPEK-EYRPWLNVLLIRVYAKEDCLEEMEKSI 390
A + + +K K+I ++ L+P+ Y ++++ Y+K ++E K +
Sbjct: 474 NASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYN-----MMMKCYSKVGEIDEAIKLL 528
Query: 391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450
++ E+ + ++ ++++ ++ + VD+ R + + Y++ +
Sbjct: 529 SEMVENCCEPDVI-VVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGK 587
Query: 451 QRRVEEMESVLKEM 464
+++E + + M
Sbjct: 588 NGKIQEAIELFEGM 601
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 68/156 (43%), Gaps = 4/156 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y +K ++ +D A L +E + + N+L+ D+ +F +K
Sbjct: 508 YNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMK 567
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM-TAWM 276
E + P++VTYNTL++ G+ + F+ + PN T+N L +
Sbjct: 568 -EMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEV 626
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
++ +++MM G V PD TY ++ G +G +
Sbjct: 627 TLALKMLFKMMDMGCV-PDVFTYNTIIFGLVKNGQV 661
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 65/146 (44%), Gaps = 10/146 (6%)
Query: 187 LKTIGTYNALLGAYMYNGL---------SDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
L+ + + +L AY YNGL + ++R + + PS+ TY++L+ G
Sbjct: 178 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILDG-FRPSLQTYSSLMVGLG 236
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN 297
+ ++ + +E++ L PNV+T+ I A + EI + M PD
Sbjct: 237 KRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVV 296
Query: 298 TYLLLLRGYAHSGNLPRMEKIYELVK 323
TY +L+ + L ++++ +K
Sbjct: 297 TYTVLIDALCTARKLDCAKEVFAKMK 322
>gi|297792331|ref|XP_002864050.1| EMB1006 [Arabidopsis lyrata subsp. lyrata]
gi|297309885|gb|EFH40309.1| EMB1006 [Arabidopsis lyrata subsp. lyrata]
Length = 723
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 3/155 (1%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
N+++ LFAE K LK T TYN L+ AY D ++L R+++ + + P++ +
Sbjct: 393 NHIEEVEGLFAEIKAKGLKPTAATYNILMDAYARRMQPDIVETLLREME-DLGLEPNVKS 451
Query: 229 YNTLISVFGRLLLVDHMEA-AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
+ LIS +GR + M A AF +K L P+ +Y LI Y + K ++ M
Sbjct: 452 FTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEM 511
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
+ P TY LL + SG+ ++ +I++L+
Sbjct: 512 WMEGIKPSVETYTSLLDAFRRSGDTEKLMEIWKLM 546
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ TY +LL A+ +G ++K +++ + +E I + +TYNTL+ F + L
Sbjct: 519 SVETYTSLLDAFRRSGDTEKLMEIWKLMLRE-KIKGTRITYNTLLDGFAKQGLYIEARDV 577
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
E L P+V TYN L+ Y K+ ++ + M A + PD+ TY ++ +
Sbjct: 578 VSEFGKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVR 637
Query: 309 SGNLPR 314
+ R
Sbjct: 638 VRDFKR 643
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 132/334 (39%), Gaps = 56/334 (16%)
Query: 177 DLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
++F + ++K +K + + L+ ++ GL ++ + +++K+ S +IV YNTL+
Sbjct: 330 EIFEKMSDKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIV-YNTLMDA 388
Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
+ + ++ +E F EIK L P TYN L+ Y VE + + M+ + P+
Sbjct: 389 YNKSNHIEEVEGLFAEIKAKGLKPTAATYNILMDAYARRMQPDIVETLLREMEDLGLEPN 448
Query: 296 TNTYLLLLRGYAHSGNLP--------RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347
++ L+ Y + + RM+K+ H A+I AYS
Sbjct: 449 VKSFTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHS-------YTALIHAYSVSG-- 499
Query: 348 DRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM-EKSINDAFEHKTSVTTVRIM 406
W + YA EEM + I + E TS
Sbjct: 500 --------------------WHE----KAYA---SFEEMWMEGIKPSVETYTS------- 525
Query: 407 RCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466
++ ++ R +KL K + R Y++ + +A Q E V+ E
Sbjct: 526 --LLDAFRRSGDTEKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFGK 583
Query: 467 YKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
+ S T+ ++ AYA GQ K+ Q+L M
Sbjct: 584 MGLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMA 617
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN LL + GL + + + + K + PS++TYN L++ + R + +E
Sbjct: 557 TYNTLLDGFAKQGLYIEARDVVSEFGK-MGLQPSVMTYNMLMNAYARGGQDAKLPQLLKE 615
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
+ NL P+ TY+ +I ++ + + ++MM +PD +Y
Sbjct: 616 MAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPDPRSY 663
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G+ +V+ A +LF + ++ + +Y+ ++ G D F +LK + + P
Sbjct: 939 GKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKL-SGLDPD 997
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+V YN +I+ GR V+ + F E+++ ++P+++TYN LI A M + ++Y+
Sbjct: 998 LVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYE 1057
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
++ + P+ TY L+RG++ SGN R +Y+
Sbjct: 1058 ELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYK 1092
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 201 MYNGLS-----DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
M NGL ++ SLF +++ I+P + TYN LI G +V+ ++E++
Sbjct: 1004 MINGLGRSQRVEEALSLFDEMRNRG-ITPDLYTYNALILNLGIAGMVEEAGKMYEELQLK 1062
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
L PNVFTYN LI G+ + + +Y+ M G P+T T+
Sbjct: 1063 GLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTF 1106
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/326 (20%), Positives = 135/326 (41%), Gaps = 15/326 (4%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ TY+AL+ A + L ++++ + P+I T+ I + GR +D
Sbjct: 226 SLKTYSALMVALGKRRDIETVMGLLQEME-SLGLRPNIYTFTICIRILGRAGKIDEAYGI 284
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ + D+ P+V TY LI A +E++ MKA PD TY+ LL ++
Sbjct: 285 LKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSD 344
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G+L +++ + + DG ++ I + C V ++ + + ++ ++ P
Sbjct: 345 HGDLDAIKEFWS--EMEADGYLPDVVTFTILIDALCKV-GKVDEAFGTLDVMKKQGVAPN 401
Query: 369 L---NVL---LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
L N L L+R+ ++ LE + ++ E TT + Y + K
Sbjct: 402 LHTYNTLICGLLRLNRLDEALE-----LFNSMESLGLETTAYTYILFIDYYGKSGESGKA 456
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482
++ ++ G ++ + A Q R+EE + ++ + T+ I+
Sbjct: 457 IKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRC 516
Query: 483 YATCGQRRKVNQVLGLMCKNGYDVPV 508
Y G+ ++L M +NG D V
Sbjct: 517 YGKAGRVDDAIKLLSEMEENGCDPEV 542
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 9/208 (4%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ YN+L+ + L++ LF +K A +P + TYN + G+ + +
Sbjct: 787 SLEAYNSLIDGLLKARLTEMAWGLFYKMKN-AGCTPDVFTYNLFLDALGKSGKIKELFDL 845
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
++E+ PN T+N +I G + + K ++Y + +G P TY L+ G
Sbjct: 846 YEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLK 905
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G L ++ +E + + PL ++ + K ++ L R + ++ RP
Sbjct: 906 LGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGK---QGDVETACELFRRMVKEGIRPD 962
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEH 396
L I V DCL M ++DA +
Sbjct: 963 LKSYSIMV----DCL-CMVGKVDDALHY 985
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ Y G D L +++ E P +V N+LI + VD FQ
Sbjct: 509 TYNILMRCYGKAGRVDDAIKLLSEME-ENGCDPEVVIINSLIDTLYKADRVDEAWKMFQR 567
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAH 308
+K+ L+P V TYN L+AG G+V+E +++ M A P+T ++ LL
Sbjct: 568 MKEMKLAPTVVTYNTLLAGLGKE---GRVQEATALFKGMIADDCPPNTISFNTLLDCLCK 624
Query: 309 SGNL 312
+G +
Sbjct: 625 NGEV 628
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 86/228 (37%), Gaps = 23/228 (10%)
Query: 112 CLFRRHSNGYAFVELMKQLGSRPRL------------------ALEVLNWRRRQAGYGTP 153
C + + +++MK+ G P L ALE+ N G
Sbjct: 378 CKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFN---SMESLGLE 434
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSL 212
T Y I + G+ A F + N + I NA L + G ++ +
Sbjct: 435 TTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEF 494
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
F LKK ++P +TYN L+ +G+ VD E++++ P V N LI
Sbjct: 495 FNGLKK-CGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLY 553
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
A + +++Q MK + P TY LL G G + +++
Sbjct: 554 KADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFK 601
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 9/132 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y L+ + +G + ++R + E I PS+ TY+ L+ G+ ++ + QE
Sbjct: 194 SYIGLIHLLLKSGFCREALKVYRRMVSEG-IKPSLKTYSALMVALGKRRDIETVMGLLQE 252
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK----AGPVMPDTNTYLLLLRGYA 307
++ L PN++T+ I A GK++E Y ++K AG PD TY +L+
Sbjct: 253 MESLGLRPNIYTFTICIRILGRA---GKIDEAYGILKRMDDAG-CGPDVVTYTVLIDALC 308
Query: 308 HSGNLPRMEKIY 319
++G L ++++
Sbjct: 309 NAGKLNNAKELF 320
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 56/109 (51%)
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
++F L K I+PS+ YN+LI + L + F ++K++ +P+VFTYN +
Sbjct: 773 NVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDA 832
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ ++ ++Y+ M P+T T+ +++ G S +L + +Y
Sbjct: 833 LGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLY 881
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 17/167 (10%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+ + VD A +F L T+ TYN LL G + +LF+ + + + P+
Sbjct: 554 KADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIAD-DCPPNT 612
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA-------WMWGK 279
+++NTL+ + VD + + N P+V TYN +I G + W++
Sbjct: 613 ISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLF-- 670
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
+QM K + PD T LL G G + ++ + HHV
Sbjct: 671 ----HQMKKV--IYPDYVTLCTLLPGVIKDGRIEDAFRVAKEFVHHV 711
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 48/234 (20%), Positives = 92/234 (39%), Gaps = 40/234 (17%)
Query: 170 NNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
++D + ++E A+ +L + T+ L+ A G D+ D+ K+ ++P++ T
Sbjct: 346 GDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTL-DVMKKQGVAPNLHT 404
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YNTLI RL +D F ++ L +TY I Y + GK + ++ MK
Sbjct: 405 YNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMK 464
Query: 289 AGPVMP-----------------------------------DTNTYLLLLRGYAHSGNLP 313
++P D TY +L+R Y +G +
Sbjct: 465 TNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVD 524
Query: 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
K+ ++ + E +I ++I K DR+ + + + + E + P
Sbjct: 525 DAIKLLSEMEENGCDPEVVIINSLIDTLYK---ADRVDEAWKMFQRMKEMKLAP 575
>gi|390474529|ref|XP_003734795.1| PREDICTED: LOW QUALITY PROTEIN: leucine-rich PPR motif-containing
protein, mitochondrial [Callithrix jacchus]
Length = 1722
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 77/320 (24%), Positives = 139/320 (43%), Gaps = 37/320 (11%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ YNALL Y+ N Q+ F +EANI P+ VTY LI+ + + ++
Sbjct: 486 VSHYNALLKVYLQNEYK-FSQTDFLAKMEEANIQPNRVTYQRLIASYCNMGDIEGASKIL 544
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+K +L +N LI G+ A E I +M+ + P +TYL LL YA
Sbjct: 545 GFMKTKDLPITEAVFNSLIRGHARAGDMENAENILTVMREAGIEPGPDTYLALLNAYAEK 604
Query: 310 GNLPRMEKIYELV-KHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP- 367
G++ +++ E V K + + L++ +I +++K + I L +L E+ Y P
Sbjct: 605 GDIDHVKQTLEKVEKSELYLTDRDLLQ-IIFSFAKAGYPQYVSGI--LEKLTCERRYIPD 661
Query: 368 WLNVLLIRVYAK-ED--------CLEEMEKSIND----AFEHKTSVTT------------ 402
+N++L+ V K ED C E S+ND H ++ T
Sbjct: 662 AINLILLLVTEKLEDTALQILLACPVSKEDSLNDFGNFFLRHCVTMNTPVEKLSDYCKKL 721
Query: 403 --VRIMRCIVSSYFRC----NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
V++ C + C N D + +K + G+ + + +V + ++ V+
Sbjct: 722 KEVQMHSCPLQFTLSCALLANKTDLAKDLMKAMKEEGFPIRTHYFWPLLVGHQKEKNVQG 781
Query: 457 MESVLKEMENYKIDCSKKTF 476
+ VLK M+ + +++T+
Sbjct: 782 IIEVLKGMQELGVHPNQETY 801
>gi|255660878|gb|ACU25608.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 484
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDXLRLVEEMKGFGIKPNAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E++ ++ + + +I ++ K D + +A++RL
Sbjct: 271 MSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320
>gi|297847954|ref|XP_002891858.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337700|gb|EFH68117.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 395
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 40/226 (17%)
Query: 154 MTKEEYT-KGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQS 211
M+KE + + I G+ + A +F E +++ K ++ ++NALL AY + D +
Sbjct: 103 MSKEGFAARIISLYGKAGMFENAQKVFDEMPDRNCKRSVLSFNALLSAYGLSKKFDVVEQ 162
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN-YLIAG 270
LF +L + +I P IV+YNTLI + A E ++ L P++ T+N L++
Sbjct: 163 LFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALLDEFENKGLKPDIVTFNTLLLSS 222
Query: 271 YMTAW------MWGKVEE----------------------------IYQMMKAGPVMPDT 296
Y+ +W K+ E +++ +KA + PD
Sbjct: 223 YLKGQFELGEEIWAKLVEKNVPIDIRTYNARLLGLASEVKSKELVSLFEELKASGIKPDV 282
Query: 297 NTYLLLLRGYAHSGNLPRMEKIY-ELVKH--HVDGKEFPLIRAMIC 339
++ ++RG + G + E Y E+VKH D F L+ +C
Sbjct: 283 FSFNAMIRGSINQGKMDEAESWYKEIVKHGYRPDKATFALLLPAMC 328
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 2/139 (1%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A L E NK LK I T+N LL + G + + ++ L E N+ I TYN +
Sbjct: 196 AVALLDEFENKGLKPDIVTFNTLLLSSYLKGQFELGEEIWAKLV-EKNVPIDIRTYNARL 254
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ + + F+E+K S + P+VF++N +I G + + E Y+ +
Sbjct: 255 LGLASEVKSKELVSLFEELKASGIKPDVFSFNAMIRGSINQGKMDEAESWYKEIVKHGYR 314
Query: 294 PDTNTYLLLLRGYAHSGNL 312
PD T+ LLL +G+
Sbjct: 315 PDKATFALLLPAMCKAGDF 333
>gi|255660874|gb|ACU25606.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 484
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E++ ++ + + +I ++ K D + +A++RL
Sbjct: 271 MSEARVILKEMMDKYLAPTDNSIFLRLISSHCKSGNLDAAADVLKAMIRL 320
>gi|357113402|ref|XP_003558492.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Brachypodium distachyon]
Length = 688
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 13/264 (4%)
Query: 134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTY 193
PR A+E W + G G Y+ I GR + D+A L+ A + +
Sbjct: 212 PRKAVE---WFEKMPGLGCSPDMLTYSAVIDAYGRAGDADMALRLYDRARAEKCQLDPVI 268
Query: 194 NA-LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
A ++ + +G ++F ++K + P++V YNT++ GR + ++ +E+
Sbjct: 269 CATVIKVHSTSGNFAGALNVFEEMKA-VGVKPNLVVYNTVLDAMGRAMRPWVVKTIHREM 327
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ PN TY L+ Y A +Y+MMK + D Y +LL A G +
Sbjct: 328 VSQQVQPNRATYCCLLQAYTRARYGEDAMVVYRMMKDEVMDIDVVLYNMLLSMCADIGYI 387
Query: 313 PRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
E+I+ +K H D + P +M+ Y S T + E +++ + E ++P +
Sbjct: 388 DEAEEIFRDMKAHTDTRFKPDSWTYSSMVTLY---SCTGNVLGAEGILKEMAEAGFKPNI 444
Query: 370 NVL--LIRVYAKEDCLEEMEKSIN 391
+L LIR Y K +++ +S
Sbjct: 445 FILTSLIRCYGKAGHTDDVVRSFG 468
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEAN--ISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
YN LL G D+ + +FRD+K + P TY+++++++ V E +
Sbjct: 374 YNMLLSMCADIGYIDEAEEIFRDMKAHTDTRFKPDSWTYSSMVTLYSCTGNVLGAEGILK 433
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
E+ ++ PN+F LI Y A V + M++ + PD
Sbjct: 434 EMAEAGFKPNIFILTSLIRCYGKAGHTDDVVRSFGMLEDLNIRPD 478
>gi|297836334|ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331889|gb|EFH62308.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 755
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 10/136 (7%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y ++ Y G +DK F L K N PS++TY LI + + E+ F+ +
Sbjct: 478 YTTMIDGYCTLGRTDKAFQFFGALLKSGN-PPSLITYTLLIGACSKFGSISDAESVFRIM 536
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL-----RGYA 307
K L P+V TYN L+ GY KV E+ M++ + PD TY +L+ RGY
Sbjct: 537 KTEGLHPDVVTYNNLMYGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYV 596
Query: 308 HSGNLPRMEKIYELVK 323
N E I EL++
Sbjct: 597 DEAN----EIISELIR 608
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 88/214 (41%), Gaps = 45/214 (21%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+GA G +S+FR +K E + P +VTYN L+ +G+ ++ + E
Sbjct: 512 TYTLLIGACSKFGSISDAESVFRIMKTEG-LHPDVVTYNNLMYGYGKTHQLNKVFELIDE 570
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAG-------------------- 290
++ + +SP+V TYN LI + + EI ++++ G
Sbjct: 571 MRSAGISPDVATYNILIHSMVVRGYVDEANEIISELIRRGFVPSALAFTDVIGGLSKRGD 630
Query: 291 --------------PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP---L 333
V PD T LL GY + RMEK L +D P L
Sbjct: 631 FQEAFILWFYMADLRVKPDVVTCSALLHGYCRA---QRMEKAIVLFDKLLDAGLKPDVVL 687
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
+I Y CSV D I+K L+ L+ ++ P
Sbjct: 688 YNTLIHGY--CSVGD-IEKACELIGLMVQRGMLP 718
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 4/133 (3%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I Y++ L G + ++F+++ E + P Y T+I + L D F
Sbjct: 440 IFVYSSFLSNICSTGDMLRASTIFQEIF-ELGLLPDCYCYTTMIDGYCTLGRTDKAFQFF 498
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ S P++ TY LI E ++++MK + PD TY L+ GY
Sbjct: 499 GALLKSGNPPSLITYTLLIGACSKFGSISDAESVFRIMKTEGLHPDVVTYNNLMYGY--- 555
Query: 310 GNLPRMEKIYELV 322
G ++ K++EL+
Sbjct: 556 GKTHQLNKVFELI 568
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 88/231 (38%), Gaps = 38/231 (16%)
Query: 110 GSCL-FRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR 168
G+C F S+ + +MK G P +V+ + GYG + K +
Sbjct: 518 GACSKFGSISDAESVFRIMKTEGLHP----DVVTYNNLMYGYGKT---HQLNKVFELIDE 570
Query: 169 INNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ + ++ D + TYN L+ + + G D+ + +L + + PS +
Sbjct: 571 MRSAGISPD------------VATYNILIHSMVVRGYVDEANEIISELIRRGFV-PSALA 617
Query: 229 YNTLISVFGRLLLVDHMEAAFQE-------IKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
+ +I + FQE + D + P+V T + L+ GY A K
Sbjct: 618 FTDVIGGLSK-------RGDFQEAFILWFYMADLRVKPDVVTCSALLHGYCRAQRMEKAI 670
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
++ + + PD Y L+ GY G++ EK EL+ V P
Sbjct: 671 VLFDKLLDAGLKPDVVLYNTLIHGYCSVGDI---EKACELIGLMVQRGMLP 718
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%)
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
+ P +VT + L+ + R ++ F ++ D+ L P+V YN LI GY + K
Sbjct: 646 VKPDVVTCSALLHGYCRAQRMEKAIVLFDKLLDAGLKPDVVLYNTLIHGYCSVGDIEKAC 705
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRG 305
E+ +M ++P+ +T+ L+ G
Sbjct: 706 ELIGLMVQRGMLPNESTHHALVVG 729
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 76/167 (45%), Gaps = 12/167 (7%)
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
+ P+I Y++ +S + FQEI + L P+ + Y +I GY T G+ +
Sbjct: 436 LRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCYCYTTMIDGYCT---LGRTD 492
Query: 282 EIYQ----MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+ +Q ++K+G P TY LL+ + G++ E ++ ++K + +
Sbjct: 493 KAFQFFGALLKSGNP-PSLITYTLLIGACSKFGSISDAESVFRIMKTEGLHPDVVTYNNL 551
Query: 338 ICAYSKCSVTDRIKKIEALMR---LIPE-KEYRPWLNVLLIRVYAKE 380
+ Y K +++ ++ MR + P+ Y ++ +++R Y E
Sbjct: 552 MYGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYVDE 598
>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
Length = 504
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+G NG + F ++ + NI P +TYN LI+ F + VD +
Sbjct: 228 TYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRARTILEF 287
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K + SPNVF Y+ L+ GY + +E++ +K+ + PDT +Y L+ +G
Sbjct: 288 MKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLCRTG- 346
Query: 312 LPRMEKIYELVKHHVD 327
R+++ EL++ D
Sbjct: 347 --RVDEATELLQQMKD 360
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 15/161 (9%)
Query: 172 VDLAADLFAEAANK-HLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK--KEANIS-PSI 226
VDLA L A +K +L+ +N L+ + NG Q+ F +K K A +S P++
Sbjct: 170 VDLARKLLVNARSKLNLRPNTCIFNILVKHHCRNG---DLQAAFEVVKEMKSARVSYPNL 226
Query: 227 VTYNTLISVFGRLLLVDHMEAA---FQE-IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
VTY+TLI G L ++ A F+E + N+ P+ TYN LI G+ +
Sbjct: 227 VTYSTLI---GGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRGKVDRART 283
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
I + MK+ P+ Y +L+ GY G L ++++ +K
Sbjct: 284 ILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIK 324
>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
Length = 665
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 3/157 (1%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
G++ N DL K I YN+LLGAY G+ + ++F +KK + P I
Sbjct: 202 GQVENCKAIFDLMVAEGVK--PNIVAYNSLLGAYASRGMHREALAIFNLIKKNG-LRPDI 258
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
V+Y +L++ +GR + F ++K ++ PN +YN LI Y +A M + +
Sbjct: 259 VSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHE 318
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
M+ + PD + LL + R+E I E +
Sbjct: 319 MEKDGIQPDVVSISTLLAACGRCRQITRIETILEAAR 355
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 23/228 (10%)
Query: 112 CLFRRHSNGYAFVELMKQLGSRP------------------RLALEVLNWRRRQAGYGTP 153
C++ + N A +LM G +P R AL + N ++ G
Sbjct: 199 CIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKN---GLR 255
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL 212
YT + GR + A ++F + K +YNAL+ AY G+ + L
Sbjct: 256 PDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGL 315
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
+++K+ I P +V+ +TL++ GR + +E + + + N YN I Y+
Sbjct: 316 LHEMEKDG-IQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYL 374
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ + K E+Y M+ V PD TY +L+ G + G + +E
Sbjct: 375 SFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFE 422
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 28/164 (17%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL-----------L 241
YN+ + +Y+ G +K L+ ++ E+N+ P VTYN LIS +L +
Sbjct: 366 YNSGIKSYLSFGDYEKALELYTSMR-ESNVKPDAVTYNILISGSSKLGKYTESLRFFEDM 424
Query: 242 VD------------HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
VD E+ F +K S P+V TY LI Y W + ++++ M+
Sbjct: 425 VDSKVSSTKEGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEV 484
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
+ PD L+ + G R+ ++ E +K K PL
Sbjct: 485 NGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKK----KSIPL 524
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 73/169 (43%), Gaps = 13/169 (7%)
Query: 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
+Y+K I + + ++ +D F T N ++ + G + LF ++
Sbjct: 131 QYSKAISYFEIMKGANVTSDTF------------TLNIIIHCLVKIGQCGEAIELFNSMR 178
Query: 218 -KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
+ P +VTY +++ + V++ +A F + + PN+ YN L+ Y + M
Sbjct: 179 ERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGM 238
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
+ I+ ++K + PD +Y LL Y S + +++ +K +
Sbjct: 239 HREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKN 287
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 75/360 (20%), Positives = 144/360 (40%), Gaps = 15/360 (4%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTY 193
R A+ ++ R A P T+ Y I G N A +L + + + T+
Sbjct: 63 RWAINIMEDMLRAA---IPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTH 119
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
N +L A K S F ++ K AN++ T N +I ++ F ++
Sbjct: 120 NIVLSALKNGAQYSKAISYF-EIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMR 178
Query: 254 D--SNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ + P+V TY ++ Y ++G+VE I+ +M A V P+ Y LL YA
Sbjct: 179 ERRTKCPPDVVTYTSIMHSYC---IYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYAS 235
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G I+ L+K + + +++ AY + + ++ +++ M+ K +
Sbjct: 236 RGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVS 295
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
N L I Y L+E +++ + V I ++++ RC + ++ ++
Sbjct: 296 YNAL-IDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSI-STLLAACGRCRQITRIETILEA 353
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
A S G L Y+S + Y S E+ + M + T+ I+ + G+
Sbjct: 354 ARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGK 413
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 68/360 (18%), Positives = 142/360 (39%), Gaps = 10/360 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I+ R N VD A LF E K YN+L+ A+ G ++ D+
Sbjct: 14 YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDML 73
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ A I P+ TYN +I+ G +++ ++ + P++ T+N +++ +
Sbjct: 74 RAA-IPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQY 132
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
K +++MK V DT T +++ G +++ ++ ++
Sbjct: 133 SKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYT 192
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDA 393
+S C + +++ +A+ L+ + +P N++ L+ YA E N
Sbjct: 193 SIMHSYC-IYGQVENCKAIFDLMVAEGVKP--NIVAYNSLLGAYASRGMHREALAIFNLI 249
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
++ V ++++Y R +K + + + + Y++ + Y S
Sbjct: 250 KKNGLRPDIVSYTS-LLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGM 308
Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
++E +L EME I + + A C Q ++ +L G D+ A+ S
Sbjct: 309 LKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNS 368
>gi|255660896|gb|ACU25617.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 484
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E++ ++ + + +I ++ K D + +A++RL
Sbjct: 271 MSEARVILKEMMDKYLAPTDNXIFMRLISSHCKSGNLDAAADVLKAMIRL 320
>gi|42570403|ref|NP_850357.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330254930|gb|AEC10024.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 683
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/340 (21%), Positives = 145/340 (42%), Gaps = 18/340 (5%)
Query: 175 AADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
A DLF K + + T+ +++ Y G + C+++F + E + P+IV+YN
Sbjct: 170 ALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEG-LKPNIVSYNA 228
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L+ + + + +IK + + P+V +Y L+ Y + GK +E++ MM+
Sbjct: 229 LMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKER 288
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351
P+ TY L+ Y +G L +I+ ++ DG + P + ++ + CS + +
Sbjct: 289 RKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQ--DGIK-PNVVSVCTLLAACSRSKKKV 345
Query: 352 KIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSIN--DAFEHKTSVTTVRI 405
++ ++ + LN I Y E+EK+I + K
Sbjct: 346 NVDTVLSAAQSRGIN--LNTAAYNSAIGSYINA---AELEKAIALYQSMRKKKVKADSVT 400
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
++S R + + +++K E L + +Y S + Y+ Q +V E ES+ +M+
Sbjct: 401 FTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMK 460
Query: 466 NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
+ + M +AY + K ++ M NG +
Sbjct: 461 MAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIE 500
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 2/146 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I+ R N VD A LF E K TY+AL+ A+ G +L D+
Sbjct: 14 YNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDML 73
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ A I+PS TYN LI+ G +++ D+ + P++ T+N +++ Y + +
Sbjct: 74 RAA-IAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQY 132
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLL 303
K +++MK V PDT T+ +++
Sbjct: 133 SKALSYFELMKGAKVRPDTTTFNIII 158
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 77/166 (46%), Gaps = 11/166 (6%)
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
Y++++ + + V E+ F ++K + P+V Y ++ Y + WGK E++ M
Sbjct: 435 VYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEM 494
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA-YSKCSV 346
+A + PD+ L+R + G + + +L++ KE P A+ +S C+
Sbjct: 495 EANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMRE----KEIPFTGAVFFEIFSACNT 550
Query: 347 TDRIKKIEALMRLIPEKEYRPWLNVLL----IRVYAKEDCLEEMEK 388
K+ L++++ Y P L++ L + ++ K +E M K
Sbjct: 551 LQEWKRAIDLIQMM--DPYLPSLSIGLTNQMLHLFGKSGKVEAMMK 594
>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
Length = 677
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 3/157 (1%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
G++ N DL K I YN+LLGAY G+ + ++F +KK + P I
Sbjct: 202 GQVENCKAIFDLMVAEGVK--PNIVAYNSLLGAYASRGMHREALAIFNLIKKNG-LRPDI 258
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
V+Y +L++ +GR + F ++K ++ PN +YN LI Y +A M + +
Sbjct: 259 VSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHE 318
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
M+ + PD + LL + R+E I E +
Sbjct: 319 MEKDGIQPDVVSISTLLAACGRCRQITRIETILEAAR 355
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 1/166 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN+ + +Y+ G +K L+ ++ E+N+ P VTYN LIS +L F+++
Sbjct: 366 YNSGIKSYLSFGDYEKALELYTSMR-ESNVKPDAVTYNILISGSSKLGKYTESLRFFEDM 424
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
DS +S Y+ LI Y+ + E + MK PD TY L++ Y G
Sbjct: 425 VDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGW 484
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
R +++ ++ + + + +++ A++K +R+ ++ M+
Sbjct: 485 KRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMK 530
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 73/169 (43%), Gaps = 13/169 (7%)
Query: 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
+Y+K I + + ++ +D F T N ++ + G + LF ++
Sbjct: 131 QYSKAISYFEIMKGANVTSDTF------------TLNIIIHCLVKIGQCGEAIELFNSMR 178
Query: 218 -KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
+ P +VTY +++ + V++ +A F + + PN+ YN L+ Y + M
Sbjct: 179 ERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGM 238
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
+ I+ ++K + PD +Y LL Y S + +++ +K +
Sbjct: 239 HREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKN 287
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 68/360 (18%), Positives = 142/360 (39%), Gaps = 10/360 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I+ R N VD A LF E K YN+L+ A+ G ++ D+
Sbjct: 14 YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDML 73
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ A I P+ TYN +I+ G +++ ++ + P++ T+N +++ +
Sbjct: 74 RAA-IPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQY 132
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
K +++MK V DT T +++ G +++ ++ ++
Sbjct: 133 SKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYT 192
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDA 393
+S C + +++ +A+ L+ + +P N++ L+ YA E N
Sbjct: 193 SIMHSYC-IYGQVENCKAIFDLMVAEGVKP--NIVAYNSLLGAYASRGMHREALAIFNLI 249
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
++ V ++++Y R +K + + + + Y++ + Y S
Sbjct: 250 KKNGLRPDIVSYTS-LLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGM 308
Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
++E +L EME I + + A C Q ++ +L G D+ A+ S
Sbjct: 309 LKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNS 368
>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 7/195 (3%)
Query: 175 AADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +L+ E + + + TYN+L+ + +G + +F DL P +VTYNTLI
Sbjct: 273 ARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMF-DLMVSKGCFPDVVTYNTLI 331
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F + V+ F E+ L + FTYN LI GY A ++++ M V
Sbjct: 332 TGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVS 391
Query: 294 PDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352
PD TY +LL ++G + + + + +L K +D +I I C TD++K+
Sbjct: 392 PDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMD---VDIITYNIIIQGLCR-TDKLKE 447
Query: 353 IEALMRLIPEKEYRP 367
L R + K +P
Sbjct: 448 AWCLFRSLTRKGVKP 462
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 5/164 (3%)
Query: 147 QAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGL 205
Q G T G AG++N +A +F + + I TYN LL NG
Sbjct: 353 QGLVGDAFTYNTLIHGYCQAGKLN---VAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGK 409
Query: 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
+K + DL+K + + I+TYN +I R + F+ + + P+ Y
Sbjct: 410 IEKALVMVEDLQK-SEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYI 468
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+I+G + + +++ + MK MP Y LR + S
Sbjct: 469 TMISGLCRKGLQREADKLCRRMKEDGFMPSERIYDETLRDHYTS 512
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 19/211 (9%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218
+ +G +F ++ VD + D F N + YN ++ N + +F ++K
Sbjct: 159 FCQGNRFQEAVSLVD-SMDGFGFVPN-----VVIYNTVINGLCKNRDLNNALEVFYCMEK 212
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
+ I VTYNTLIS +++ + PNV + LI ++
Sbjct: 213 KG-IRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLL 271
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI---R 335
+ +Y+ M V+P+ TY L+ G+ G L + +++L+ V FP +
Sbjct: 272 EARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLM---VSKGCFPDVVTYN 328
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
+I + K K++E M+L E Y+
Sbjct: 329 TLITGFCKS------KRVEDGMKLFCEMTYQ 353
>gi|388512253|gb|AFK44188.1| unknown [Medicago truncatula]
Length = 376
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 39/216 (18%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
I G+ N A LF E ++ +++ + NALL AY+++ D + LF+ L + +
Sbjct: 95 ITLYGKSNMHRHAQKLFDEMPQRNCERSVLSLNALLAAYLHSKQYDVVERLFKKLPVQLS 154
Query: 222 ISPSIVTYNTLIS----------------------------VFGRLL-------LVDHME 246
+ P +V+YNT I F LL + E
Sbjct: 155 VKPDLVSYNTYIKALLEKGSFDSAVSVLEEMEKDGVESDLITFNTLLDGLYSKGRFEDGE 214
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
++++ + N+ PN+ TYN + G A G+ E Y+ M+ V PD ++ L++G+
Sbjct: 215 KLWEKLGEKNVVPNIRTYNARLLGLAVAKRAGEAVEFYEEMEKKGVKPDLFSFNALIKGF 274
Query: 307 AHSGNLPRMEKIY---ELVKHHVDGKEFPLIRAMIC 339
A+ GNL +K + E +H + + +I +C
Sbjct: 275 ANEGNLDEAKKWFGEIEKSEHDPSKRTYAIIVPFLC 310
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 125/326 (38%), Gaps = 13/326 (3%)
Query: 50 LCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEK 109
LC T +V ++E PD T T+ R VD+ D++F + E+
Sbjct: 20 LCKTGKVTEALEMVEEMTEKGVNPDVA-----TYTIIVDRLCRAGKVDEADELFHKMIER 74
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G +N A+ L+ L + A G Y + R+
Sbjct: 75 GC-----SANTVAYNALINGLCKDENIE-RAYKLLEEMASKGYEPDNITYNTILSGLCRM 128
Query: 170 NNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK-KEANISPSIV 227
V A F ++ + + YN LL A G + LF+ + + ++P ++
Sbjct: 129 GKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLI 188
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TYNTLI F R+ D F+++ P+ TYN ++ G + EE+++ M
Sbjct: 189 TYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKM 248
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347
P+ TY ++L G+ GN+ R ++YE + + L A+I K
Sbjct: 249 VDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKV 308
Query: 348 DRIKKIEALMRLIPEKEYRPWLNVLL 373
D K+ M I N+LL
Sbjct: 309 DDAHKVLEEMSKIGAVPDVVTYNILL 334
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 168 RINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R +N+D A ++F + + G TY+ +L + G +C L+ ++ E SP +
Sbjct: 234 RKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMT-EKRFSPDV 292
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
+ N +I + + VD +E+ P+V TYN L+ G + K E++
Sbjct: 293 LLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFST 352
Query: 287 MKAGPVMPDTNTYLLLLRG 305
M PD +Y ++L G
Sbjct: 353 MVDNGCAPDIVSYSVVLNG 371
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 44/221 (19%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ + +D+ LF+D+ + + P VTYN+++ R +D E F++
Sbjct: 189 TYNTLIDGFCRVEKTDEAMKLFKDVIAKGYM-PDTVTYNSILLGLARKSNMDEAEEMFKK 247
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ-------------------------- 285
+ DS +PN TY+ +++G+ + E+Y+
Sbjct: 248 MVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKK 307
Query: 286 ----------MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
M K G V PD TY +LL G + NL ++K +EL VD P I
Sbjct: 308 VDDAHKVLEEMSKIGAV-PDVVTYNILLDGLCKT-NL--VDKAHELFSTMVDNGCAPDIV 363
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRP---WLNVLL 373
+ + T+++ L + E++ P N+L+
Sbjct: 364 SYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILM 404
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN LL L DK LF + + +P IV+Y+ +++ + V F
Sbjct: 329 TYNILLDGLCKTNLVDKAHELFSTMV-DNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDR 387
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ + L P+V T+N L+ G A + +++ +M V+PD T L+ G
Sbjct: 388 MIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHG 441
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/278 (19%), Positives = 112/278 (40%), Gaps = 16/278 (5%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E P +VTY+T+IS + V +E+ + ++P+V TY ++ A
Sbjct: 3 EKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVD 62
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK---HHVDGKEFPLIR 335
+ +E++ M +T Y L+ G N+ R K+ E + + D + I
Sbjct: 63 EADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTIL 122
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL---NVLLIRVYAKEDCLEE--MEKSI 390
+ +C K S + + +P + Y P + N LL +Y + E + K++
Sbjct: 123 SGLCRMGKVS------EAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTM 176
Query: 391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450
D + K + + ++ + R D+ K + G+ Y+S ++ A
Sbjct: 177 -DMADRKVAPDLI-TYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLAR 234
Query: 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+ ++E E + K+M + + T+ I+ + G
Sbjct: 235 KSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGN 272
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+K + SP +VTY TL++ VD FQ++ S +P+ YN L+ G
Sbjct: 494 VKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQG 553
Query: 276 MWGKVEEIYQMMKAGPVMPD 295
+ + + Q MK + D
Sbjct: 554 RHIQADRLTQAMKEKGFLSD 573
>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
Length = 738
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 121/285 (42%), Gaps = 12/285 (4%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K P+I TY L++ F R L + E F+E++ + P+V+ YN L+ Y A +
Sbjct: 450 KSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLP 509
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
EI+ +M+ PD +Y +L+ Y +G E ++E +K +
Sbjct: 510 QGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHMLL 569
Query: 338 ICAYSKCSVTDRIKKIEALMR---LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAF 394
+ A+++ R +++ A + L P+ LN +L YA+ L++ME+ + A
Sbjct: 570 LAAHARSGNATRCEEVMAQLHKSGLTPDTFA---LNAML-NAYARAGRLDDMERLL--AA 623
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454
+ V V++Y R V ++ + G + ++M YA ++
Sbjct: 624 MERRGDADVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEY 683
Query: 455 EEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
+++EM + T ++ A C R+V QV ++
Sbjct: 684 GRCVGMVEEMVDAGCYPDAGTARVL---LAACSDERQVEQVTAIV 725
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/333 (19%), Positives = 132/333 (39%), Gaps = 39/333 (11%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I YN L+ +Y +K +S++ L EA P+ TY L+ + + E
Sbjct: 318 IICYNLLIESYGKKRQLNKAESIYMALL-EAQCVPTEDTYALLLRAYCNAGSLHRAEGVI 376
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM----------------------- 286
E+++ + PN YN + G + A K E+YQ
Sbjct: 377 SEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKA 436
Query: 287 ------------MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
MK+ P+ TY L+ +A G + E+++E ++ +
Sbjct: 437 KQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAY 496
Query: 335 RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAF 394
A++ AYS+ + +I +LM+ + + R N+ L+ Y + E+ E ++ +
Sbjct: 497 NALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNI-LVDAYGRAGLHEDAE-AVFEEL 554
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454
+ + T++ +++++ R + + + +G ++ + YA R+
Sbjct: 555 KQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRL 614
Query: 455 EEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
++ME +L ME + D T+ + AY G
Sbjct: 615 DDMERLLAAMER-RGDADVGTYNVAVNAYGRAG 646
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 99/252 (39%), Gaps = 8/252 (3%)
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
S+ P++ YN LI Y K E IY + +P +TY LLLR Y ++G+L R
Sbjct: 312 SSFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHR 371
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK-EYRPWLNVLL 373
E + ++ H + A + K T+ K +E R+ E+ L+
Sbjct: 372 AEGVISEMREHGIPPNATVYNAYLDGLLKARCTE--KAVEVYQRMKRERCRANTETFTLM 429
Query: 374 IRVYAKEDCLEEMEKSIND--AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
I VY K K N+ + K ++ T +V+++ R +K + +
Sbjct: 430 INVYGKAKQPMSSMKVFNEMKSIGCKPNICTY---TALVNAFAREGLCEKAEEVFEEMQQ 486
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
AG Y++ M Y+ + + M++ + + ++ I+ AY G
Sbjct: 487 AGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHED 546
Query: 492 VNQVLGLMCKNG 503
V + + G
Sbjct: 547 AEAVFEELKQRG 558
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/288 (18%), Positives = 113/288 (39%), Gaps = 10/288 (3%)
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
++ P I+ YN LI +G+ ++ E+ + + ++ P TY L+ Y A +
Sbjct: 312 SSFRPDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHR 371
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
E + M+ + P+ Y L G + + ++Y+ +K MI
Sbjct: 372 AEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMIN 431
Query: 340 AYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDAFE 395
Y K K+ M+ I K N+ L+ +A+E E+ E+ + + +
Sbjct: 432 VYGKAKQPMSSMKVFNEMKSIGCKP-----NICTYTALVNAFAREGLCEKAEE-VFEEMQ 485
Query: 396 HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVE 455
V ++ +Y R + + G R+ Y+ + Y E
Sbjct: 486 QAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHE 545
Query: 456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ E+V +E++ + + K+ ++ A+A G + +V+ + K+G
Sbjct: 546 DAEAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSG 593
>gi|9755886|emb|CAC01940.1| 67kD chloroplastic RNA-binding protein, P67.1 [Raphanus sativus]
Length = 700
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 89/374 (23%), Positives = 155/374 (41%), Gaps = 35/374 (9%)
Query: 43 NHSFTRDLCAPATHTVFPTLVRLLSETLTYPDAR--VRKDLTQTVSALRDELLANV---- 96
N + D+ A +F + +T P+ V +L +T+ R+ +L NV
Sbjct: 123 NEADVSDVIAKFGSKLFEQDAVVTLNNMTNPETAPLVLNNLLETLKPTREVILYNVTMKV 182
Query: 97 ----DDLDKVFRVLDEKGSCLFRR--HSNGYAFVELM---KQLGSRPRLALEVLNWRRRQ 147
DL+K ++ DE + +R + F L+ +Q G P+ A+E W +
Sbjct: 183 FRKSKDLEKSEKLFDE----MLQRGVKPDNATFTTLISCARQCG-LPKRAVE---WFEKM 234
Query: 148 AGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLS 206
+G I GR NV++A L+ A + + T++ L+ Y Y G
Sbjct: 235 PSFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNY 294
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
D C +++ ++K + P++V YN L+ G+ +++ + PN TY
Sbjct: 295 DGCLNIYEEMKS-LGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAA 353
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
LI Y A IY+ MK + Y LL A G + +I++ +K
Sbjct: 354 LIRAYGRARYGEDALVIYRQMKGKGLELTVILYNTLLSMCADIGYVDEAFEIFQDMKS-- 411
Query: 327 DGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKED 381
G P ++I YS C R+ + EA +R + E + P L VL LI+ Y K
Sbjct: 412 SGTCEPDSWTFSSLITVYSCCG---RVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAK 468
Query: 382 CLEEMEKSINDAFE 395
++++ ++ E
Sbjct: 469 QVDDVVRTFEQVLE 482
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I+ GR + A ++ + K L+ T+ YN LL G D+ +F+D+K
Sbjct: 351 YAALIRAYGRARYGEDALVIYRQMKGKGLELTVILYNTLLSMCADIGYVDEAFEIFQDMK 410
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P T+++LI+V+ V EAA +E++++ P +F LI Y A
Sbjct: 411 SSGTCEPDSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQV 470
Query: 278 GKVEEIYQMMKAGPVMPD 295
V ++ + + PD
Sbjct: 471 DDVVRTFEQVLELGIEPD 488
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 58/296 (19%), Positives = 117/296 (39%), Gaps = 33/296 (11%)
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
++ YN + VF + ++ E F E+ + P+ T+ LI+ + + E ++
Sbjct: 173 VILYNVTMKVFRKSKDLEKSEKLFDEMLQRGVKPDNATFTTLISCARQCGLPKRAVEWFE 232
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV---KHHVDGKEFP-LIRAMICA- 340
M + + PD T ++ Y +GN+ +Y+ K +D F LIR A
Sbjct: 233 KMPSFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAG 292
Query: 341 -YSKC-SVTDRIKKIEALMRLIP--------EKEYRPWLNVLLIRVYAKEDCLEEMEKSI 390
Y C ++ + +K + L+ K RPW ++ + I
Sbjct: 293 NYDGCLNIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHK------------DLI 340
Query: 391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450
++ FE S ++ +Y R + ++ + G L LY++ + M A
Sbjct: 341 SNGFEPNWSTYAA-----LIRAYGRARYGEDALVIYRQMKGKGLELTVILYNTLLSMCAD 395
Query: 451 QRRVEEMESVLKEMENYKI-DCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
V+E + ++M++ + TF + Y+ CG+ + L M + G++
Sbjct: 396 IGYVDEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGRVSEAEAALREMREAGFE 451
>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63070, mitochondrial; Flags: Precursor
gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 67/131 (51%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+NAL+ A++ G + + L+ ++ K + P +V YNTLI F + V+ F+E+
Sbjct: 323 FNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREM 382
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
L N TY LI G+ A + +++ M + V PD TY +LL G ++GN+
Sbjct: 383 SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNV 442
Query: 313 PRMEKIYELVK 323
++E ++
Sbjct: 443 ETALVVFEYMQ 453
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY A++ G D +L ++K I +V YNT+I + +D F +
Sbjct: 217 TYGAVINGLCKRGEPDLALNLLNKMEK-GKIEADVVIYNTIIDGLCKYKHMDDAFDLFNK 275
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + P+VFTYN LI+ W + M + PD + L+ + G
Sbjct: 276 METKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGK 335
Query: 312 LPRMEKIY-ELVK 323
L EK+Y E+VK
Sbjct: 336 LVEAEKLYDEMVK 348
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 5/180 (2%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIG 191
R +EV ++ G +T YT I + + D A +F + + + I
Sbjct: 371 RVEEGMEVFREMSQRGLVGNTVT---YTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIM 427
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN LL NG + +F ++K ++ IVTY T+I + V+ F
Sbjct: 428 TYNILLDGLCNNGNVETALVVFEYMQKR-DMKLDIVTYTTMIEALCKAGKVEDGWDLFCS 486
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + PNV TY +++G+ + + + ++ MK +P++ TY L+R G+
Sbjct: 487 LSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGD 546
>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
Length = 583
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 3/157 (1%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
G++ N DL K I YN+LLGAY G+ + ++F +KK + P I
Sbjct: 202 GQVENCKAIFDLMVAEGVK--PNIVAYNSLLGAYASRGMHREALAIFNLIKKNG-LRPDI 258
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
V+Y +L++ +GR + F ++K ++ PN +YN LI Y +A M + +
Sbjct: 259 VSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHE 318
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
M+ + PD + LL + R+E I E +
Sbjct: 319 MEKDGIQPDVVSISTLLAACGRCRQITRIETILEAAR 355
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 101/241 (41%), Gaps = 25/241 (10%)
Query: 112 CLFRRHSNGYAFVELMKQLGSRP------------------RLALEVLNWRRRQAGYGTP 153
C++ + N A +LM G +P R AL + N ++ G
Sbjct: 199 CIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKN---GLR 255
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL 212
YT + GR + A ++F + K +YNAL+ AY G+ + L
Sbjct: 256 PDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGL 315
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
+++K+ I P +V+ +TL++ GR + +E + + + N YN I Y+
Sbjct: 316 LHEMEKDG-IQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYL 374
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHVDG-KE 330
+ + K E+Y M+ V PD TY +L+ G + G + +E +V V KE
Sbjct: 375 SFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKE 434
Query: 331 F 331
F
Sbjct: 435 F 435
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 73/169 (43%), Gaps = 13/169 (7%)
Query: 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
+Y+K I + + ++ +D F T N ++ + G + LF ++
Sbjct: 131 QYSKAISYFEIMKGANVTSDTF------------TLNIIIHCLVKIGQCGEAIELFNSMR 178
Query: 218 -KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
+ P +VTY +++ + V++ +A F + + PN+ YN L+ Y + M
Sbjct: 179 ERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGM 238
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
+ I+ ++K + PD +Y LL Y S + +++ +K +
Sbjct: 239 HREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKN 287
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/342 (20%), Positives = 137/342 (40%), Gaps = 12/342 (3%)
Query: 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQS 211
P T+ Y I G N A +L + + + T+N +L A K S
Sbjct: 78 PPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAIS 137
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD--SNLSPNVFTYNYLIA 269
F ++ K AN++ T N +I ++ F +++ + P+V TY ++
Sbjct: 138 YF-EIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMH 196
Query: 270 GYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
Y ++G+VE I+ +M A V P+ Y LL YA G I+ L+K +
Sbjct: 197 SYC---IYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNG 253
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM 386
+ +++ AY + + ++ +++ M+ K + N L I Y L+E
Sbjct: 254 LRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNAL-IDAYGSAGMLKEA 312
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446
+++ + V I ++++ RC + ++ ++ A S G L Y+S +
Sbjct: 313 VGLLHEMEKDGIQPDVVSI-STLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIK 371
Query: 447 MYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
Y S E+ + M + T+ I+ + G+
Sbjct: 372 SYLSFGDYEKALELYTSMRESNVKPDAVTYNILISGSSKLGK 413
Score = 45.8 bits (107), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 68/360 (18%), Positives = 142/360 (39%), Gaps = 10/360 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I+ R N VD A LF E K YN+L+ A+ G ++ D+
Sbjct: 14 YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDML 73
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ A I P+ TYN +I+ G +++ ++ + P++ T+N +++ +
Sbjct: 74 RAA-IPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQY 132
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
K +++MK V DT T +++ G +++ ++ ++
Sbjct: 133 SKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYT 192
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDA 393
+S C + +++ +A+ L+ + +P N++ L+ YA E N
Sbjct: 193 SIMHSYC-IYGQVENCKAIFDLMVAEGVKP--NIVAYNSLLGAYASRGMHREALAIFNLI 249
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
++ V ++++Y R +K + + + + Y++ + Y S
Sbjct: 250 KKNGLRPDIVSYTS-LLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGM 308
Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
++E +L EME I + + A C Q ++ +L G D+ A+ S
Sbjct: 309 LKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNS 368
>gi|255660898|gb|ACU25618.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 484
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G N
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLC---N 267
Query: 312 LPRMEKIYELVKHHVD 327
+M + ++K +D
Sbjct: 268 AEKMSEARVILKEMMD 283
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G +G+ V+ A F + ++ + + TYN ++ Y ++ + F ++K
Sbjct: 159 GFFLSGK---VETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGR- 214
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
NI P++VTY TLI + + VD +E+K + PN TY+ L+ G A +
Sbjct: 215 NIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEA 274
Query: 281 EEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNL 312
I + M + P D + ++ L+ + SGNL
Sbjct: 275 RVILKEMMDKYLAPTDNSIFMRLISSHCKSGNL 307
>gi|255660894|gb|ACU25616.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 481
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETXNRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E++ ++ + + +I ++ K D + +A++RL
Sbjct: 271 MSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 320
>gi|222637660|gb|EEE67792.1| hypothetical protein OsJ_25528 [Oryza sativa Japonica Group]
Length = 475
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 74/353 (20%), Positives = 140/353 (39%), Gaps = 42/353 (11%)
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQ 210
TP++ G +GR+ + A L E +K YN+LL AY D+
Sbjct: 66 TPLSASVVVDGYCKSGRVAH---ARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVA 122
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+ + ++ E I P++ TY L+ + +EA F+E+K NLS +V+ Y+ +I
Sbjct: 123 EMLKVMENEG-IEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINA 181
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
Y A + E++ + P+ +TY L+ G+ G + E + ++ G
Sbjct: 182 YCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGIN 241
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI 390
+ MI Y + ++ D+ +I+ +M E+M +
Sbjct: 242 QIVFNTMIDGYCRKNMVDKALEIKMIM--------------------------EKMGIEL 275
Query: 391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450
D + + T +R R N +D+ N ++ G R Y + + ++ +
Sbjct: 276 -DVYTYNTLACGLR----------RANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCN 324
Query: 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ + E + +EM + S T+ +M Y G R+ + M K G
Sbjct: 325 EGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKG 377
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 1/152 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L D+ ++L R + E + P+ V+Y TLIS+ + F+E
Sbjct: 279 TYNTLACGLRRANRMDEAKNLLR-IMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFRE 337
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + P++ TYN ++ GY+ + E M+ ++PD +Y L+ G+ +G
Sbjct: 338 MAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKGLVPDIYSYAALVHGHCVNGK 397
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+ +++E +K A+I +K
Sbjct: 398 VDVALRLFEEMKQRGSKPNLVAYTALISGLAK 429
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 10/133 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y L+ + G + + LFR++ PS+VTYN ++ + + + E E
Sbjct: 314 SYTTLISIHCNEGDMVEARRLFREMAGNG-AEPSLVTYNVMMDGYIKKGSIREAERFKNE 372
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAH 308
++ L P++++Y L+ G+ + GKV+ +++ MK P+ Y L+ G A
Sbjct: 373 MEKKGLVPDIYSYAALVHGH---CVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAK 429
Query: 309 SGNLPRMEKIYEL 321
G R E+ ++L
Sbjct: 430 EG---RSEEAFQL 439
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 9/136 (6%)
Query: 178 LFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS-- 234
LF E A N ++ TYN ++ Y+ G + + +++K+ + P I +Y L+
Sbjct: 334 LFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKNEMEKKG-LVPDIYSYAALVHGH 392
Query: 235 -VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V G+ VD F+E+K PN+ Y LI+G + ++Y M +
Sbjct: 393 CVNGK---VDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLT 449
Query: 294 PDTNTYLLLLRGYAHS 309
PD Y L+ G H+
Sbjct: 450 PDDALYSALV-GSLHT 464
>gi|403269599|ref|XP_003926809.1| PREDICTED: leucine-rich PPR motif-containing protein, mitochondrial
[Saimiri boliviensis boliviensis]
Length = 1395
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 139/322 (43%), Gaps = 41/322 (12%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA- 248
+ YNALL Y+ N Q+ F +EANI P+ VTY LI+ + V +E A
Sbjct: 162 VSHYNALLKVYLQNEYK-FSQTDFLAKMEEANIQPNRVTYQRLIASYCN---VGDIEGAS 217
Query: 249 ----FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304
F + KD ++ VF + LI G+ A + I +M+ + P +TYL LL
Sbjct: 218 KILGFMKTKDLPITEAVF--DSLITGHARAGDMENAKNILTVMREAGIEPGPDTYLALLN 275
Query: 305 GYAHSGNLPRMEKIYELVK----HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI 360
YA G++ +++ E V+ + +D F +I + A V++ ++K+ R I
Sbjct: 276 AYAEKGDIDHVKQTLEKVEKSELYLMDRDLFQIIFSFAKAGYPQYVSEILEKVSRERRYI 335
Query: 361 P-----------EKEYRPWLNVLLIRVYAKEDCLEE-----------MEKSINDAFEHKT 398
P EK L +LL +KED L + M + ++
Sbjct: 336 PDAMNLILLLVTEKLEDTALQILLACPVSKEDGLSDFGNFFLRHCVTMNTPVEKLTDYCK 395
Query: 399 SVTTVRI----MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454
+ V++ ++ +S R N D + +K E G+ + + +V + ++ V
Sbjct: 396 KLKQVQMHSSPLQFTLSCALRDNKTDLAKDLMKAMEEEGFPIRTHYFWPLLVGHQKEKNV 455
Query: 455 EEMESVLKEMENYKIDCSKKTF 476
+ + VLK M+ + ++ T+
Sbjct: 456 QGIIEVLKGMQELGVHPNQDTY 477
>gi|115529197|dbj|BAF34331.1| pentatricopeptide repeat protein [Physcomitrella patens]
Length = 728
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 129/295 (43%), Gaps = 41/295 (13%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
D +S+F++++ A ++PS+ + T+I V+G V E F ++ S ++F YN
Sbjct: 363 DGAKSVFKEMQV-AGVTPSLESSCTMIYVYGMNGDVKEAEGLFHSLRSSVKRLDIFAYNV 421
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR------------ 314
+I YM M ++Y++M+ ++PD TY +LR NLP
Sbjct: 422 MINVYMRCDMPEGAIKVYKLMEEDHLLPDAYTYHSMLR-MCQKCNLPAQAEEIYWRLRNS 480
Query: 315 ---------------------MEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRI 350
+E++++L + +D P MI Y K + +R
Sbjct: 481 DVELDEVMCNCVLNTCAKFLPLEEMHKLFQEMIDVGYVPYNITFNVMIDLYGKAGMPERA 540
Query: 351 KKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV 410
K L + + + L+ YAK+ ME ++ + ++ +++ I+
Sbjct: 541 HKALKLAQQFGSADKISFST--LVHAYAKKQDFPNMEAALWE-MQNAGYGSSLEAYNSIL 597
Query: 411 SSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+Y + ++K+++ + R E++G R+ + Y+ + Y + EME++ + M+
Sbjct: 598 DAYGKAGQMEKVSDVLARMENSGMRMDLASYNILINTYGKNYMIAEMETLFRTMQ 652
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 75/146 (51%), Gaps = 7/146 (4%)
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNAL 196
+E W + AGYG+ + E Y + G+ ++ +D+ A N ++ + +YN L
Sbjct: 574 MEAALWEMQNAGYGSSL--EAYNSILDAYGKAGQMEKVSDVLARMENSGMRMDLASYNIL 631
Query: 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256
+ Y N + + ++LFR +++E + P TYNT+I +G D F+ ++D+
Sbjct: 632 INTYGKNYMIAEMETLFRTMQEEG-VVPDRWTYNTIIRTYGFADYPDRAVYWFKAMQDAG 690
Query: 257 LSPNVFTYNYLIAGYMTAWMWGKVEE 282
+SP+ TY L++ + A G ++E
Sbjct: 691 ISPDRVTYMILVSTFERA---GNIDE 713
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 76/148 (51%), Gaps = 1/148 (0%)
Query: 165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
+A + + ++ A L+ + ++ YN++L AY G +K + ++ + +
Sbjct: 565 YAKKQDFPNMEAALWEMQNAGYGSSLEAYNSILDAYGKAGQMEKVSDVLARMEN-SGMRM 623
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
+ +YN LI+ +G+ ++ ME F+ +++ + P+ +TYN +I Y A + +
Sbjct: 624 DLASYNILINTYGKNYMIAEMETLFRTMQEEGVVPDRWTYNTIIRTYGFADYPDRAVYWF 683
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ M+ + PD TY++L+ + +GN+
Sbjct: 684 KAMQDAGISPDRVTYMILVSTFERAGNI 711
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 5/193 (2%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
G+I + D E+ L +G YN+++ AY L DK L +++E ++ P
Sbjct: 150 GKIEEAERIMDTVEESG-MSLGLVG-YNSMITAYGKACLYDKAARLVEKMREE-DLVPDS 206
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW-MWGKVEEIYQ 285
+TY+ +I GR+ + + F E+K + P +N LI+ Y A + G V I +
Sbjct: 207 ITYSCMIGACGRVGKLKEALSWFAEMKRLEIKPASSNFNTLISPYGKAKDVEGIVRVITE 266
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
M K G PD T +R Y +G + + +I L++ +E ++ Y KC+
Sbjct: 267 MKKYG-CKPDWQTLDAAVRAYDRAGLIKDVTEILNLLRDAGWVEETGSYGTLLHVYLKCN 325
Query: 346 VTDRIKKIEALMR 358
+ +I MR
Sbjct: 326 LPKEALRIFLAMR 338
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 58/281 (20%), Positives = 117/281 (41%), Gaps = 30/281 (10%)
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
+ + +G+ ++ E +++S +S + YN +I Y A ++ K + + M+
Sbjct: 140 SNVADTYGQQGKIEEAERIMDTVEESGMSLGLVGYNSMITAYGKACLYDKAARLVEKMRE 199
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
++PD+ TY ++ G R+ K+ E + + K + A + S +
Sbjct: 200 EDLVPDSITYSCMI------GACGRVGKLKEALSWFAEMKRLEIKPASSNFNTLISPYGK 253
Query: 350 IKKIEALMRLIPE-KEY--RPWLNVL--LIRVYAKEDCLEEMEKSIN---DA--FEHKTS 399
K +E ++R+I E K+Y +P L +R Y + ++++ + +N DA E S
Sbjct: 254 AKDVEGIVRVITEMKKYGCKPDWQTLDAAVRAYDRAGLIKDVTEILNLLRDAGWVEETGS 313
Query: 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR----LCRSLYHSKMVMYASQRRVE 455
T ++ Y +CN + AG +CRSL + + +
Sbjct: 314 YGT------LLHVYLKCNLPKEALRIFLAMRKAGMAPKEYMCRSL----ICTFRDAEMFD 363
Query: 456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
+SV KEM+ + S ++ M Y Y G ++ +
Sbjct: 364 GAKSVFKEMQVAGVTPSLESSCTMIYVYGMNGDVKEAEGLF 404
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/134 (18%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ Y G+ ++ + ++ S ++++TL+ + + +MEAA E
Sbjct: 523 TFNVMIDLYGKAGMPERAHKALKLAQQFG--SADKISFSTLVHAYAKKQDFPNMEAALWE 580
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++++ ++ YN ++ Y A KV ++ M+ + D +Y +L+ Y +
Sbjct: 581 MQNAGYGSSLEAYNSILDAYGKAGQMEKVSDVLARMENSGMRMDLASYNILINTYGKNYM 640
Query: 312 LPRMEKIYELVKHH 325
+ ME ++ ++
Sbjct: 641 IAEMETLFRTMQEE 654
>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 608
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 20/202 (9%)
Query: 123 FVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEA 182
FV MK+LG P L + N KG + VD A L E
Sbjct: 291 FVYRMKELGVHPNLV--IFN---------------SLIKGFLDITDTDGVDEALTLMEEY 333
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
K + T++ ++ A+ GL DKCQ +F D+ K A I P I ++ L + R
Sbjct: 334 GVK--PDVITFSTIMNAWSSAGLMDKCQEIFNDMAK-AGIEPDIHAFSILAKGYVRAGET 390
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
++ E+ + S + PNV +I+G+ +A + +Y+ M + P+ T+ L
Sbjct: 391 ENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKMENAKMVYEKMCEIGISPNLKTFETL 450
Query: 303 LRGYAHSGNLPRMEKIYELVKH 324
+ GYA + + E++ +L++
Sbjct: 451 IWGYAEARQPGKAEELLQLMEE 472
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 71/337 (21%), Positives = 148/337 (43%), Gaps = 28/337 (8%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+T+ + L+ + G + +F +L ++ + P+++TY TL++ +L H E+
Sbjct: 56 RTVHSRTKLMNILIGKGKPHEANLIFDNLVEDGH-RPTLITYTTLVAALTKL---KHFES 111
Query: 248 AF---QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304
F +++++ + P+ YN +I + + + +I+Q MK P T+T+ L++
Sbjct: 112 IFLLISKVEENGMKPDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIK 171
Query: 305 GYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM-ICAYSKCSVTDRIKKIEALMRLIPEK 363
GY ++G K+ L+ +DG P R I + CS + + L +++
Sbjct: 172 GYGNAGKPEEGLKMLHLMS--LDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASG 229
Query: 364 EYRPWLNV--LLIRVYAK-------EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF 414
+P + +L R YA+ ED + EM +++ R IV+ Y
Sbjct: 230 -IQPDVVTYNILARAYAQKGETLRAEDLILEM--------QYEKVAPNERTCGIIVNGYC 280
Query: 415 RCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKK 474
+ + + FV R + G +++S + + + ++ L ME Y +
Sbjct: 281 KEGNMIEALRFVYRMKELGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVI 340
Query: 475 TFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
TF + A+++ G K ++ M K G + ++AF
Sbjct: 341 TFSTIMNAWSSAGLMDKCQEIFNDMAKAGIEPDIHAF 377
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/339 (18%), Positives = 137/339 (40%), Gaps = 11/339 (3%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
NV A +F + + K T T+N L+ Y G ++ + + + ++ P+ T
Sbjct: 142 GNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLMSLDGSVKPNDRT 201
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN L+ + ++ ++ S + P+V TYN L Y + E++ M+
Sbjct: 202 YNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYAQKGETLRAEDLILEMQ 261
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
V P+ T +++ GY GN+ + +K + ++I + + TD
Sbjct: 262 YEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLIKGFLDITDTD 321
Query: 349 RIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR 404
+ + LM +EY +V+ ++ ++ +++ ++ ND + +
Sbjct: 322 GVDEALTLM-----EEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIE-PDIH 375
Query: 405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
+ Y R + + + +G R + + + + S ++E + V ++M
Sbjct: 376 AFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKMENAKMVYEKM 435
Query: 465 ENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
I + KTF + + YA Q K ++L LM + G
Sbjct: 436 CEIGISPNLKTFETLIWGYAEARQPGKAEELLQLMEEKG 474
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/175 (18%), Positives = 77/175 (44%), Gaps = 4/175 (2%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N+L+ ++ +D L +E + P ++T++T+++ + L+D + F ++
Sbjct: 307 FNSLIKGFLDITDTDGVDEAL-TLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDM 365
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ + P++ ++ L GY+ A E + M V P+ ++ G+ +G +
Sbjct: 366 AKAGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKM 425
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
+ +YE + +I Y++ + K E L++L+ EK P
Sbjct: 426 ENAKMVYEKMCEIGISPNLKTFETLIWGYAE---ARQPGKAEELLQLMEEKGVFP 477
>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
gi|223948163|gb|ACN28165.1| unknown [Zea mays]
gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
Length = 786
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 69/330 (20%), Positives = 136/330 (41%), Gaps = 14/330 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ AY G D+ +LF +KK + P++ TYN ++ + G+ M E
Sbjct: 352 TYNTVMTAYGNVGKVDEALALFDQMKKTGFV-PNVNTYNLVLGMLGKKSRFTVMLEMLGE 410
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ S +PN T+N ++A M V + + M++ V +TY L+ Y G+
Sbjct: 411 MSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGS 470
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN- 370
K+Y + A++ S+ + I + MR K ++P
Sbjct: 471 RTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMR---TKGFKPNEQS 527
Query: 371 -VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
LL++ YAK + + N+ + + I+R +V + F+C +D + +
Sbjct: 528 YSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVILRTLVIANFKCRRLDGMETAFQEV 587
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
++ G+ +++S + +YA + V ++ + T+ + YA C +
Sbjct: 588 KARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSES 647
Query: 490 RKVNQVLG-LMCKN-------GYDVPVNAF 511
+ ++L L C Y+ +N F
Sbjct: 648 WEAEKILNQLKCSQTMKPDVVSYNTVINGF 677
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 120/318 (37%), Gaps = 46/318 (14%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N +L G+ D + ++ + S TYNTLI+ +GR + + E
Sbjct: 422 TWNTMLAVCGKRGMEDYVTRVLEGMRS-CGVELSRDTYNTLIAAYGRCGSRTNAFKMYNE 480
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + +P + TYN L+ W + I M+ P+ +Y LLL+ YA GN
Sbjct: 481 MTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGN 540
Query: 312 LPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ + I V + G FP ++R ++ A KC R+ +E + + + Y P
Sbjct: 541 VAGIAAIENEV--YGSGAVFPSWVILRTLVIANFKCR---RLDGMETAFQEVKARGYNPD 595
Query: 369 LNVL--LIRVYAKED---------------------------------CLE--EMEKSIN 391
L + ++ +YAK C E E EK +N
Sbjct: 596 LVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILN 655
Query: 392 DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451
+T V +++ + + V + + + G C YH+ + Y+S
Sbjct: 656 QLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSL 715
Query: 452 RRVEEMESVLKEMENYKI 469
E V+ M + +
Sbjct: 716 EMFSEAREVIGYMVQHGL 733
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/334 (19%), Positives = 128/334 (38%), Gaps = 49/334 (14%)
Query: 172 VDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
VD A F + A H + TYNALL + G + + ++++ P VTYN
Sbjct: 261 VDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNG-CQPDAVTYN 319
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMM 287
L + R + + L PN FTYN ++ Y GKV+E ++ M
Sbjct: 320 ELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNV---GKVDEALALFDQM 376
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347
K +P+ NTY L+L G L + + F ++ M+ S+ T
Sbjct: 377 KKTGFVPNVNTYNLVL------GMLGKKSR-------------FTVMLEMLGEMSRSGCT 417
Query: 348 DRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMR 407
++ + ++ ++ +L C E+ + +
Sbjct: 418 PNRVTWNTMLAVCGKRGMEDYVTRVL---EGMRSCGVELSRDTYNT-------------- 460
Query: 408 CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467
++++Y RC + SAG+ C + Y++ + + + Q +S++ +M
Sbjct: 461 -LIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKMRTK 519
Query: 468 KIDCSKKTFWIMYYAYATCGQRRKV----NQVLG 497
+++++ ++ YA G + N+V G
Sbjct: 520 GFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYG 553
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 6/226 (2%)
Query: 100 DKVFRVLDEKGSCLFRRHSNGY-AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEE 158
D V RVL+ SC + Y + + GSR A ++ N AG+ +T
Sbjct: 437 DYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTN-AFKMYN-EMTSAGFTPCITT-- 492
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y + R + A + ++ K K +Y+ LL Y G ++ ++
Sbjct: 493 YNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVY 552
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ PS V TL+ + +D ME AFQE+K +P++ +N +++ Y M+
Sbjct: 553 GSGAVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMY 612
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
K E++ +K + PD TY L+ YA EKI +K
Sbjct: 613 SKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLK 658
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 115/294 (39%), Gaps = 50/294 (17%)
Query: 39 TKSPNHSFTRD-----LCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALR---- 89
T +P HSF + A ++H + PTL L+ + D +R D+T + AL
Sbjct: 64 TPTPPHSFLSPDAQVLVLAISSHPL-PTLAAFLA---SRRDELLRADITSLLKALELSGH 119
Query: 90 ------------DELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLA 137
E A+ L+ V R L +G +H A L+ + P
Sbjct: 120 WEWALALLRWAGKEGAADASALEMVVRALGREG-----QHD---AVCALLDETPLPPGSR 171
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNAL 196
L+V YT + R + A +LFAE + + T+ TYN +
Sbjct: 172 LDV----------------RAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVV 215
Query: 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256
L Y G S D + A + P T +T+I+ R LVD A F+++K
Sbjct: 216 LDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARG 275
Query: 257 LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+P V TYN L+ + A + + + M+ PD TY L YA +G
Sbjct: 276 HAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAG 329
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218
Y+K + I L+ DL TYN+L+ Y S + + + LK
Sbjct: 612 YSKATEVFDSIKRSGLSPDLI------------TYNSLMDMYAKCSESWEAEKILNQLKC 659
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
+ P +V+YNT+I+ F + LV + E+ ++P TY+ L+ GY + M+
Sbjct: 660 SQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMFS 719
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ E+ M + P TY ++ Y +
Sbjct: 720 EAREVIGYMVQHGLKPMELTYRRVVESYCRA 750
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV-DHMEAAFQE 251
Y +L A G ++ LF +L+++ ++P++VTYN ++ V+GR+ + A E
Sbjct: 177 YTTVLHALSRAGRYERALELFAELRRQG-VAPTLVTYNVVLDVYGRMGRSWPRIVALLDE 235
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + + P+ FT + +IA + + ++ +KA P TY LL+ + +GN
Sbjct: 236 MRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGN 295
>gi|297835316|ref|XP_002885540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331380|gb|EFH61799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 841
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 73/342 (21%), Positives = 146/342 (42%), Gaps = 16/342 (4%)
Query: 142 NWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYM 201
+W +R G M+ E Y+ I G + A +F + +T+ YN ++ AY
Sbjct: 457 SWFKRFHVAGN-MSSEGYSANIDAYGERGYLSEAERVFICCQEVNKRTVLEYNVMIKAY- 514
Query: 202 YNGLSDKCQ---SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS 258
G+S C+ LF + ++P TYNTL+ + + D + ++++++
Sbjct: 515 --GISKSCEKACELFESMMS-YGVTPDKCTYNTLVQILASADMPDKAKCYLEKMRETGYV 571
Query: 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
+ Y +I+ ++ EE+Y+ M + PD Y +L+ +A +GN+ +
Sbjct: 572 SDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQQAMSY 631
Query: 319 YELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRLIPEKEYRP-WLNVLLIRV 376
E +K + + ++I Y+K D + I L+R E +Y + + +I +
Sbjct: 632 VEAMKEAGIPENSVIYNSLIKLYTKVGYLDEAEAIYRKLLRSCNETQYPDVYTSNCMINL 691
Query: 377 YAKEDCLEEMEKSINDAFEHKTSVT--TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW 434
Y++ + + E +I ++ + + T +M C+ R ++A ++
Sbjct: 692 YSQRSMVRKAE-AIFESMKQRREANEFTFAMMLCMYKKNGRFEEATQIAKQMREMRILTD 750
Query: 435 RLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476
L Y+S + +YA R +E KEM + I TF
Sbjct: 751 PLS---YNSVLGLYALDGRFKEAVETFKEMVSSGIQPDDSTF 789
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 80/171 (46%), Gaps = 6/171 (3%)
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
K ++++ S TYNT+I +G+ + F+ + + + P T+N +I Y
Sbjct: 288 KADSHVCLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHVYGNNGQ 347
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336
+G+V + + MK PDT TY +L+ + + ++ R ++ +K + R
Sbjct: 348 FGEVTSLMKTMKF-HCAPDTRTYNILISLHTKNNDIERAGTYFKEMKGAGLKPDPVSYRT 406
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEK--EYRPWLNVLLIRVYAKEDCLEE 385
++ A+ S+ +K+ E L+ + + E + L R+Y + + LE+
Sbjct: 407 LLYAF---SIRHMVKEAEELIAEMDDNDVEIDEYTQSALTRMYIEAEMLEK 454
>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1084
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ ++G +K SLF ++K+ I PS+ TY LI F + L+ F E
Sbjct: 462 TYSKVIGFLCDASKVEKAFSLFEEMKRNG-IVPSVYTYTILIDSFCKAGLIQQARKWFDE 520
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +PNV TY LI Y+ A +E+++MM P+ TY L+ G+ +G
Sbjct: 521 MLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQ 580
Query: 312 LPRMEKIYELVKHHVDGKE 330
+ + +IY ++ ++ +
Sbjct: 581 IEKACQIYARMRGDIESSD 599
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
Query: 149 GYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA-NKHLKTIGTYNALLGAYMYNGLSD 207
G G Y+K I F + V+ A LF E N + ++ TY L+ ++ GL
Sbjct: 453 GKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQ 512
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+ + F ++ + +P++VTY LI + + + + F+ + PNV TY L
Sbjct: 513 QARKWFDEMLHKG-CTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTAL 571
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
I G+ A K +IY M+ D + Y L
Sbjct: 572 IDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKL 606
Score = 45.4 bits (106), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 48/113 (42%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
KC+ F + + + P V YN ++S L + ++ S+ PNV TY L
Sbjct: 261 KCREAFDLIDEAEDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRIL 320
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
++G + G+ + I MM P+ + L+ Y S + K+++
Sbjct: 321 LSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFK 373
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 60/135 (44%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P TY+ +I V+ + F+E+K + + P+V+TY LI + A + + +
Sbjct: 458 PDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKW 517
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+ M P+ TY L+ Y + +P ++++E++ A+I + K
Sbjct: 518 FDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCK 577
Query: 344 CSVTDRIKKIEALMR 358
++ +I A MR
Sbjct: 578 AGQIEKACQIYARMR 592
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E + +P++V Y ++ ++ D ++++ +PNV TY +I G+ + G
Sbjct: 714 ENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKS---G 770
Query: 279 KVE---EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
K+E E+++ M + P+ TY +L+ +G L K+ + +K K R
Sbjct: 771 KIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHR 830
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW--LNVLLIRVYAKE-------DCLEEM 386
+I +S+ +T L+ + E E P L +LI Y K D LEE+
Sbjct: 831 KIIEGFSQEFITSI-----GLLDELSENESVPVDSLYRILIDNYIKAGRLEVALDLLEEI 885
Query: 387 EKSINDAFEHK 397
S + A +K
Sbjct: 886 SSSPSHAVSNK 896
>gi|125559559|gb|EAZ05095.1| hypothetical protein OsI_27286 [Oryza sativa Indica Group]
Length = 551
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 74/353 (20%), Positives = 140/353 (39%), Gaps = 42/353 (11%)
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQ 210
TP++ G +GR+ + A L E +K YN+LL AY D+
Sbjct: 142 TPLSASVVVDGYCKSGRVAH---ARQLLDEMPRHGVKVNALCYNSLLDAYTREKDDDRVA 198
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+ + ++ E I P++ TY L+ + +EA F+E+K NLS +V+ Y+ +I
Sbjct: 199 EMLKVMENEG-IEPTVGTYTILVDGLSAARDITKVEAVFEEMKSKNLSGDVYFYSSVINA 257
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
Y A + E++ + P+ +TY L+ G+ G + E + ++ G
Sbjct: 258 YCRAGNVRRASEVFDECVGNGIEPNEHTYGALINGFCKIGQMEAAEMLVTDMQVRGVGIN 317
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI 390
+ MI Y + ++ D+ +I+ +M E+M +
Sbjct: 318 QIVFNTMIDGYCRKNMVDKALEIKMIM--------------------------EKMGIEL 351
Query: 391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450
D + + T +R R N +D+ N ++ G R Y + + ++ +
Sbjct: 352 -DVYTYNTLACGLR----------RANRMDEAKNLLRIMIEKGVRPNHVSYTTLISIHCN 400
Query: 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ + E + +EM + S T+ +M Y G R+ + M K G
Sbjct: 401 EGDMVEARRLFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKKEMEKKG 453
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 1/152 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L D+ ++L R + E + P+ V+Y TLIS+ + F+E
Sbjct: 355 TYNTLACGLRRANRMDEAKNLLR-IMIEKGVRPNHVSYTTLISIHCNEGDMVEARRLFRE 413
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + P++ TYN ++ GY+ + E + M+ ++PD +Y L+ G+ +G
Sbjct: 414 MAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKKEMEKKGLVPDIYSYAALVHGHCVNGK 473
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+ +++E +K A+I +K
Sbjct: 474 VDVALRLFEEMKQRGSKPNLVAYTALISGLAK 505
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 65/133 (48%), Gaps = 10/133 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y L+ + G + + LFR++ PS+VTYN ++ + + + E +E
Sbjct: 390 SYTTLISIHCNEGDMVEARRLFREMAGNG-AEPSLVTYNVMMDGYIKKGSIREAERFKKE 448
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAH 308
++ L P++++Y L+ G+ + GKV+ +++ MK P+ Y L+ G A
Sbjct: 449 MEKKGLVPDIYSYAALVHGH---CVNGKVDVALRLFEEMKQRGSKPNLVAYTALISGLAK 505
Query: 309 SGNLPRMEKIYEL 321
G R E+ ++L
Sbjct: 506 EG---RSEEAFQL 515
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 178 LFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS-- 234
LF E A N ++ TYN ++ Y+ G + + ++++K+ + P I +Y L+
Sbjct: 410 LFREMAGNGAEPSLVTYNVMMDGYIKKGSIREAERFKKEMEKKG-LVPDIYSYAALVHGH 468
Query: 235 -VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V G+ VD F+E+K PN+ Y LI+G + ++Y M +
Sbjct: 469 CVNGK---VDVALRLFEEMKQRGSKPNLVAYTALISGLAKEGRSEEAFQLYDNMLGDGLT 525
Query: 294 PDTNTYLLLLRGYAHS 309
PD Y L+ G H+
Sbjct: 526 PDDALYSALV-GSLHT 540
>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Vitis vinifera]
Length = 1045
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ ++G D LF ++K ++ P + TY LI F ++ L+ F E
Sbjct: 482 TYSKVIGLLCNASKVDNAFLLFEEMKSN-HVVPDVFTYTILIDSFCKVGLLQQARKWFDE 540
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +PNV TY LI Y+ A E+++MM + +P+ TY L+ G+ SG
Sbjct: 541 MVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQ 600
Query: 312 LPRMEKIYELVKHHVD 327
+ + +IY ++ + D
Sbjct: 601 IEKACQIYARMRGNAD 616
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 2/155 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+K I + VD A LF E + H+ + TY L+ ++ GL + + F ++
Sbjct: 483 YSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMV 542
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ +P++VTY LI + + + F+ + PNV TY LI G+ +
Sbjct: 543 RDG-CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQI 601
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
K +IY M+ +PD + Y + G N+
Sbjct: 602 EKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNI 636
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 109/541 (20%), Positives = 204/541 (37%), Gaps = 78/541 (14%)
Query: 24 SSKPKTLPPLSVFTLTKSPNHSF----TRDLCAPATHTV-------FPTLVRLLSETLTY 72
+SKP + +S F T S + D P + V F L L ET +
Sbjct: 22 ASKPFKISTISRFICTSSSEDNLHGLVDSDFSVPESSRVESFLAEEFAFLRDSLLETGSD 81
Query: 73 PDARVRKDLTQTVS---ALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQ 129
A V K ++ S L +++ N D F +K FR N V+++
Sbjct: 82 TGASVNKSVSGRCSNDAVLISDVIRNTGD---GFGHKTQKFLRQFREKLNETLVVDVL-S 137
Query: 130 LGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT 189
L P L ++ W RQ GYG T Y ++ G N + E ++ +
Sbjct: 138 LVKNPELGVKFFIWAGRQIGYGH--TGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEI 195
Query: 190 IGTY-NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+G N L+ NGL + LK + PS +TYN L+ VF L D ++ A
Sbjct: 196 LGKLLNVLIRKCCRNGLWNVALEELGRLK-DLGYKPSRLTYNALVRVF---LEADRLDTA 251
Query: 249 F---QEIKDSNLSPNVFT--------------------------------YNYLIAGYMT 273
+ +E+ DS + + +T Y +I+G
Sbjct: 252 YLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCE 311
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
A ++ + + M++ +P+ TY +LL G L R ++I ++ +
Sbjct: 312 ASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRI 371
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW---LNVLLIRVYAKE-----DCLEE 385
++I AY + K L++ + + +P N+L+ + E D LE
Sbjct: 372 FNSLIHAYCRSGDYSYAYK---LLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLEL 428
Query: 386 MEKSINDAFEHKTSVTTVRI---MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYH 442
EK+ + + + V + RC+ + +K + ++ S G+ S Y
Sbjct: 429 AEKAYGEMLDAHVVLNKVNVSNLARCLCGA----GKFEKAYSIIREMMSKGFIPDTSTYS 484
Query: 443 SKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502
+ + + +V+ + +EM++ + T+ I+ ++ G ++ + M ++
Sbjct: 485 KVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRD 544
Query: 503 G 503
G
Sbjct: 545 G 545
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y+AL+ + G D+ Q +F + E P++ TY++LI + +D
Sbjct: 673 VYDALIDGFCKVGKLDEAQMVFTKMS-ERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSR 731
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ---MMKAGPVMPDTNTYLLLLRGYAH 308
+ +++ +PNV Y +I G GK +E Y+ MM+ P+ TY ++ G+
Sbjct: 732 MLENSCAPNVIIYTEMIDGLCKV---GKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGK 788
Query: 309 SGNLPRMEKIYELVKH 324
+G +++K EL++
Sbjct: 789 AG---KVDKCLELMRQ 801
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 23/147 (15%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ- 250
TY AL+ AY+ LF + E I P++VTY LI + +E A Q
Sbjct: 552 TYTALIHAYLKARKMSSANELFEMMLSEGCI-PNVVTYTALIDGHCK---SGQIEKACQI 607
Query: 251 -----------------EIKDSNL-SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
+I D N+ PN+FTY L+ G A + ++ +M
Sbjct: 608 YARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGC 667
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIY 319
P+ Y L+ G+ G L + ++
Sbjct: 668 EPNHIVYDALIDGFCKVGKLDEAQMVF 694
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 14/136 (10%)
Query: 200 YMYNGLSDKCQSLFRDLKK-----------EANISPSIVTYNTLISVFGRLLLVDHMEAA 248
Y Y+ L D+ LF+D + E + +P+++ Y +I ++ D
Sbjct: 707 YTYSSLIDR---LFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRL 763
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+++ PNV TY +I G+ A K E+ + M A P+ TY +L+
Sbjct: 764 MSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCA 823
Query: 309 SGNLPRMEKIYELVKH 324
+G L ++ + +K
Sbjct: 824 AGLLDDAHQLLDEMKQ 839
>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
Length = 577
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 123/283 (43%), Gaps = 37/283 (13%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++A + P +TYNTLIS + +D A F+E+ S P+++TYN +++ +
Sbjct: 58 RQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKA 117
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI-YELVKH------------ 324
+ E +++ + PD TY LL +A G++ R+E++ ELVK
Sbjct: 118 QEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTM 177
Query: 325 -HVDGKEFPL---------IRAMICAYSKCSVT---------DRIKKIEALMRLIPEKEY 365
H+ GK L +RA+ C + T DRI + ++ + +
Sbjct: 178 IHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGL 237
Query: 366 RPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF-RCNAVDKL 422
+P L LI YAK ++ E++ + E + V R+ ++ F R + KL
Sbjct: 238 KPTLVTFSALICAYAKSGRQDDAERTFDRMVE--SGVKPDRLAYLVMLDVFARSDETRKL 295
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+ G++ LY + A +E+E V+++ME
Sbjct: 296 MVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDME 338
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 85/195 (43%), Gaps = 8/195 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ Y G D L+ +++ +P VTY L+ G++ + +E
Sbjct: 173 TYNTMIHMYGKMGRLDLALGLYDEMRA-IGCTPDAVTYTVLVDSLGKMDRISEAGKVLEE 231
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ D+ L P + T++ LI Y + E + M V PD YL++L +A S
Sbjct: 232 MADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDE 291
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ +Y + + L + ++ A +K + D I+ + M + E +N
Sbjct: 292 TRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFE------MNP 345
Query: 372 LLI-RVYAKEDCLEE 385
L+I + K +C+ +
Sbjct: 346 LVISSILIKAECISQ 360
>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
Length = 1010
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ ++G D LF ++K ++ P + TY LI F ++ L+ F E
Sbjct: 482 TYSKVIGLLCNASKVDNAFLLFEEMKSN-HVVPDVFTYTILIDSFCKVGLLQQARKWFDE 540
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +PNV TY LI Y+ A E+++MM + +P+ TY L+ G+ SG
Sbjct: 541 MVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQ 600
Query: 312 LPRMEKIYELVKHHVD 327
+ + +IY ++ + D
Sbjct: 601 IEKACQIYARMRGNAD 616
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 2/155 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+K I + VD A LF E + H+ + TY L+ ++ GL + + F ++
Sbjct: 483 YSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMV 542
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ +P++VTY LI + + + F+ + PNV TY LI G+ +
Sbjct: 543 RDG-CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQI 601
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
K +IY M+ +PD + Y + G N+
Sbjct: 602 EKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNI 636
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 109/541 (20%), Positives = 204/541 (37%), Gaps = 78/541 (14%)
Query: 24 SSKPKTLPPLSVFTLTKSPNHSF----TRDLCAPATHTV-------FPTLVRLLSETLTY 72
+SKP + +S F T S + D P + V F L L ET +
Sbjct: 22 ASKPFKISTISRFICTSSSEDNLHGLVDSDFSVPESSRVESFLAEEFAFLRDSLLETGSD 81
Query: 73 PDARVRKDLTQTVS---ALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQ 129
A V K ++ S L +++ N D F +K FR N V+++
Sbjct: 82 TGASVNKSVSGRCSNDAVLISDVIRNTGD---GFGHKTQKFLRQFREKLNETLVVDVL-S 137
Query: 130 LGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT 189
L P L ++ W RQ GYG T Y ++ G N + E ++ +
Sbjct: 138 LVKNPELGVKFFIWAGRQIGYGH--TGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEI 195
Query: 190 IGTY-NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+G N L+ NGL + LK + PS +TYN L+ VF L D ++ A
Sbjct: 196 LGKLLNVLIRKCCRNGLWNVALEELGRLK-DLGYKPSRLTYNALVRVF---LEADRLDTA 251
Query: 249 F---QEIKDSNLSPNVFT--------------------------------YNYLIAGYMT 273
+ +E+ DS + + +T Y +I+G
Sbjct: 252 YLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCE 311
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
A ++ + + M++ +P+ TY +LL G L R ++I ++ +
Sbjct: 312 ASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRI 371
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW---LNVLLIRVYAKE-----DCLEE 385
++I AY + K L++ + + +P N+L+ + E D LE
Sbjct: 372 FNSLIHAYCRSGDYSYAYK---LLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLEL 428
Query: 386 MEKSINDAFEHKTSVTTVRI---MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYH 442
EK+ + + + V + RC+ + +K + ++ S G+ S Y
Sbjct: 429 AEKAYGEMLDAHVVLNKVNVSNLARCLCGA----GKFEKAYSIIREMMSKGFIPDTSTYS 484
Query: 443 SKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502
+ + + +V+ + +EM++ + T+ I+ ++ G ++ + M ++
Sbjct: 485 KVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRD 544
Query: 503 G 503
G
Sbjct: 545 G 545
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y+AL+ + G D+ Q +F + E P++ TY++LI + +D
Sbjct: 673 VYDALIDGFCKVGKLDEAQMVFTKMS-ERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSR 731
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ---MMKAGPVMPDTNTYLLLLRGYAH 308
+ +++ +PNV Y +I G GK +E Y+ MM+ P+ TY ++ G+
Sbjct: 732 MLENSCAPNVIIYTEMIDGLCKV---GKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGK 788
Query: 309 SGNLPRMEKIYELVKH 324
+G +++K EL++
Sbjct: 789 AG---KVDKCLELMRQ 801
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 23/147 (15%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ- 250
TY AL+ AY+ LF + E I P++VTY LI + +E A Q
Sbjct: 552 TYTALIHAYLKARKMSSANELFEMMLSEGCI-PNVVTYTALIDGHCK---SGQIEKACQI 607
Query: 251 -----------------EIKDSNL-SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
+I D N+ PN+FTY L+ G A + ++ +M
Sbjct: 608 YARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGC 667
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIY 319
P+ Y L+ G+ G L + ++
Sbjct: 668 EPNHIVYDALIDGFCKVGKLDEAQMVF 694
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 14/136 (10%)
Query: 200 YMYNGLSDKCQSLFRDLKK-----------EANISPSIVTYNTLISVFGRLLLVDHMEAA 248
Y Y+ L D+ LF+D + E + +P+++ Y +I ++ D
Sbjct: 707 YTYSSLIDR---LFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRL 763
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+++ PNV TY +I G+ A K E+ + M A P+ TY +L+
Sbjct: 764 MSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCA 823
Query: 309 SGNLPRMEKIYELVKH 324
+G L ++ + +K
Sbjct: 824 AGLLDDAHQLLDEMKQ 839
>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 83/368 (22%), Positives = 149/368 (40%), Gaps = 43/368 (11%)
Query: 7 LSDAAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLL 66
+S + L+LQ Q H + T PL T+ + HS + D H + L
Sbjct: 65 ISGRIPSSLMLQLTQAHFTPCLTYTPL-YDTIVNAYVHSHSTDQALTFLHHMIHEGHVPL 123
Query: 67 SETLT-YPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVE 125
S T +R + + +EL + V LD + KG C G+ +
Sbjct: 124 SNTFNNLMCLLIRSNYFDKAWWIFNELKSKVV-LDAYSFGIMIKGCCEAGYFVKGFRLLA 182
Query: 126 LMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE---- 181
++++ G P + + YT I + NV LA +LF +
Sbjct: 183 MLEEFGLSPNVVI--------------------YTTLIDGCCKYGNVMLAKNLFCKMDRL 222
Query: 182 --AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
N H TY+ L+ + GL + ++ ++K+ + I P+ YN LIS +
Sbjct: 223 GLVPNPH-----TYSVLMNGFFKQGLQREGFQMYENMKR-SGIVPNAYAYNCLISEYCNG 276
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK-VEEIYQMMKAGPVMPDTNT 298
+VD F E+++ ++ V TYN LI G +G+ V+ ++++ K G + P+ T
Sbjct: 277 GMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVG-LSPNIVT 335
Query: 299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
Y +L+ G+ G + +++ +K +I YSK ++ + +
Sbjct: 336 YNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSK------VENLAGALD 389
Query: 359 LIPEKEYR 366
L+ E E R
Sbjct: 390 LVKEMEER 397
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Query: 172 VDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
VD A +FAE K + + TYN L+G + L + K +SP+IVTYN
Sbjct: 279 VDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNK-VGLSPNIVTYN 337
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
LI+ F + +D F ++K S LSP + TYN LIAGY ++ + M+
Sbjct: 338 ILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEER 397
Query: 291 PVMPDTNTYLLLLRGYA 307
+ P TY +L+ +A
Sbjct: 398 CIAPSKVTYTILIDAFA 414
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 12/149 (8%)
Query: 169 INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFR--DLKKEAN---I 222
+ +D A LF + + L T+ TYN L+ Y K ++L DL KE I
Sbjct: 346 VGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGY------SKVENLAGALDLVKEMEERCI 399
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
+PS VTY LI F RL + ++ S L P+V+TY+ LI G + +
Sbjct: 400 APSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASK 459
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ + + P++ Y ++ GY G+
Sbjct: 460 LFKSLGEMHLQPNSVIYNTMIHGYCKEGS 488
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 59/289 (20%), Positives = 120/289 (41%), Gaps = 43/289 (14%)
Query: 218 KEANISPSIVTYNTLISV---FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
+E +SP++V Y TLI +G ++L ++ F ++ L PN TY+ L+ G+
Sbjct: 185 EEFGLSPNVVIYTTLIDGCCKYGNVMLAKNL---FCKMDRLGLVPNPHTYSVLMNGFFKQ 241
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
+ + ++Y+ MK ++P+ Y L+ Y + G + + K++ ++ G ++
Sbjct: 242 GLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMRE--KGIACGVM 299
Query: 335 RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAF 394
I C R KK ++L+ + + ++ S N
Sbjct: 300 TYNILIGGLC----RGKKFGEAVKLVHK--------------------VNKVGLSPN--- 332
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454
+ T I+ ++ + +D + +S+G Y++ + Y+ +
Sbjct: 333 -----IVTYNIL---INGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENL 384
Query: 455 EEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
++KEME I SK T+ I+ A+A K ++ LM K+G
Sbjct: 385 AGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSG 433
>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
Length = 1438
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 146/317 (46%), Gaps = 29/317 (9%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS---VFGRLLLVDHMEAAF 249
+NAL+ AY +GL +K +++F ++ K + P++ + N ++ V GRL D +
Sbjct: 783 WNALIHAYAESGLYEKARAVFDNMIKTGPL-PTVDSVNGMMRALIVDGRL---DELYVVV 838
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E++D N + T L+ + A +V +IY MKA +P+ + Y ++ H
Sbjct: 839 EELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHH 898
Query: 310 GNLPRMEKIYELVKHHVDGKEF----PLIRAMICAYSKCSVTDRIKKI-EALMR--LIPE 362
+ EL+ ++G F ++ A++ Y+ DR ++ +++ L P+
Sbjct: 899 NRF----RDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPD 954
Query: 363 KEYRPWLNVLLIRVYAKED---CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
++ L V+ R + E+ L EM K + ++ + ++++ +
Sbjct: 955 EDTYNTLIVMYCRSFRPEEGFTLLNEMGK--------RGLTPKLQSYKSLLAASAKAELR 1006
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
++ + S ++L RS+YH M +Y + + E++L M+ I+ + T I+
Sbjct: 1007 EQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHIL 1066
Query: 480 YYAYATCGQRRKVNQVL 496
+Y T GQ R+ VL
Sbjct: 1067 MTSYGTAGQPREAENVL 1083
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 114/469 (24%), Positives = 187/469 (39%), Gaps = 101/469 (21%)
Query: 76 RVRKDLTQTVSALRDELL-----ANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQL 130
R +D V+ L D +L A VDD VLD R + AFV ++ +
Sbjct: 119 RRAQDWRARVAGLADAVLELPPGAPVDD------VLDGA-----RASPDEVAFV--VRAV 165
Query: 131 G-SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT 189
G S R AL+ W R + P ++ + GR +A ++F A + T
Sbjct: 166 GESSWRRALDAFEWLARSSA---PASRA-VAVVLGVLGRARQDSIAEEVFLRFAGEG-AT 220
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI---SVFGRLLLVDHME 246
+ +NA++G Y +G D + L D + I P +V++NTLI S G L ++
Sbjct: 221 VQVFNAMMGVYARSGRFDDARQLL-DTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALD 279
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTA----------------------WMW------- 277
F E++ S L P+V TYN LI+ + W +
Sbjct: 280 LLF-EVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVH 338
Query: 278 ---GKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKH------ 324
GK EE +++ + MPD TY LL +A GN+ ++E E LVK
Sbjct: 339 GRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNE 398
Query: 325 -------HVDGKEFPL---------IRAMICAYSKCSVT---------DRIKKIEALMRL 359
H+ GK L +RAM C + T +RI + ++
Sbjct: 399 ITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLED 458
Query: 360 IPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF-RC 416
+ + +P L LI YAK + E + + + V R+ ++ F R
Sbjct: 459 MTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMI--ASGVKPDRLAYLVMLDVFARS 516
Query: 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+K+ ++ + +R +Y +V A + + EE+E V+++ME
Sbjct: 517 GDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDME 565
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 7/197 (3%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
G ++ V+ + +A K K TYN ++ Y G D L+ +++ +P
Sbjct: 377 GNVDKVEHTCEQLVKAGFK--KNEITYNTMIHMYGKMGRLDLAVGLYDEMRA-MGCTPDA 433
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTY +I G++ + +++ D+ L P + ++ LI Y E +
Sbjct: 434 VTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDC 493
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV---KHHVDGKEFPLIRAMICAYSK 343
M A V PD YL++L +A SG+ +M +Y + + D + ++ + K
Sbjct: 494 MIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDK 553
Query: 344 C-SVTDRIKKIEALMRL 359
C + + I+ +E L R+
Sbjct: 554 CEEIEEVIQDMELLCRM 570
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ Y + ++ +L ++ K ++P + +Y +L++ + L + + F+E
Sbjct: 957 TYNTLIVMYCRSFRPEEGFTLLNEMGKRG-LTPKLQSYKSLLAASAKAELREQADQIFEE 1015
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + N Y+ ++ Y A K E + +MK + P T +L+ Y +G
Sbjct: 1016 MRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQ 1075
Query: 312 LPR 314
PR
Sbjct: 1076 -PR 1077
>gi|255660892|gb|ACU25615.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 481
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 1/114 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+K N+ P V TY LI GY++ + + MK + P+ TY LL G
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLLPG 264
>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
Length = 583
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 125/294 (42%), Gaps = 26/294 (8%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI-KDSNLSPNVFTYNYLIAGYMTAWM 276
E SP VT+N L+ R V + + +D PNV T+ +I+GY A
Sbjct: 278 NEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKA-- 335
Query: 277 WGKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
GK+E+ +Y M A +MP+T TY +L+ GY G+L ++Y+ + +
Sbjct: 336 -GKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVT 394
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV----LLIRVYAKEDCLEEMEKS 389
++I Y +C D +I + M ++R NV ++I K++ +E
Sbjct: 395 FSSLIDGYCRCGQLDDALRIWSDM-----AQHRIQPNVYTFSIIIHSLCKQNRSDEAIGL 449
Query: 390 INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA-ESAGWRLCRSLYHSKMVMY 448
+N+ I ++ +C VD+ AN +++ E G R + Y ++ Y
Sbjct: 450 LNELNLRPDIAPQAFIYNPVIDVLCKCGKVDE-ANLIRKGMEEKGCRPDKYTYTILIIGY 508
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC----GQRRKVNQVLGL 498
+ R+ E EM + CS + I + +C G +V+ V+ L
Sbjct: 509 CMKSRISEAIMFFHEM--VEAGCSPDS--ITVNCFISCLLKAGMPNEVDHVMRL 558
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N L+ + + R L+++ P++VT+ ++IS + + ++ A + +
Sbjct: 288 THNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYND 347
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ S + PN TYN LI GY G E+YQ M PD T+ L+ GY G
Sbjct: 348 MVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQ 407
Query: 312 LPRMEKIYELVKHH 325
L +I+ + H
Sbjct: 408 LDDALRIWSDMAQH 421
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 80/182 (43%), Gaps = 13/182 (7%)
Query: 119 NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADL 178
NGY V LGS A+EV R P ++ I R +D A +
Sbjct: 365 NGYGKV---GDLGS----AVEVYQQMTR---LRCPPDVVTFSSLIDGYCRCGQLDDALRI 414
Query: 179 FAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
+++ A ++ + T++ ++ + SD+ L +L +I+P YN +I V
Sbjct: 415 WSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLC 474
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY-MTAWMWGKVEEIYQMMKAGPVMPDT 296
+ VD + +++ P+ +TY LI GY M + + + ++M++AG PD+
Sbjct: 475 KCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAG-CSPDS 533
Query: 297 NT 298
T
Sbjct: 534 IT 535
>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
Length = 996
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ ++G D LF ++K ++ P + TY LI F ++ L+ F E
Sbjct: 482 TYSKVIGLLCNASKVDNAFLLFEEMKSN-HVVPDVFTYTILIDSFCKVGLLQQARKWFDE 540
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +PNV TY LI Y+ A E+++MM + +P+ TY L+ G+ SG
Sbjct: 541 MVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQ 600
Query: 312 LPRMEKIYELVKHHVD 327
+ + +IY ++ + D
Sbjct: 601 IEKACQIYARMRGNAD 616
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 2/155 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+K I + VD A LF E + H+ + TY L+ ++ GL + + F ++
Sbjct: 483 YSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMV 542
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ +P++VTY LI + + + F+ + PNV TY LI G+ +
Sbjct: 543 RDG-CAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQI 601
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
K +IY M+ +PD + Y + G N+
Sbjct: 602 EKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNI 636
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 109/541 (20%), Positives = 204/541 (37%), Gaps = 78/541 (14%)
Query: 24 SSKPKTLPPLSVFTLTKSPNHSF----TRDLCAPATHTV-------FPTLVRLLSETLTY 72
+SKP + +S F T S + D P + V F L L ET +
Sbjct: 22 ASKPFKISTISRFICTSSSEDNLHGLVDSDFSVPESSRVESFLAEEFAFLRDSLLETGSD 81
Query: 73 PDARVRKDLTQTVS---ALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQ 129
A V K ++ S L +++ N D F +K FR N V+++
Sbjct: 82 TGASVNKSVSGRCSNDAVLISDVIRNTGD---GFGHKTQKFLRQFREKLNETLVVDVL-S 137
Query: 130 LGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT 189
L P L ++ W RQ GYG T Y ++ G N + E ++ +
Sbjct: 138 LVKNPELGVKFFIWAGRQIGYGH--TGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEI 195
Query: 190 IGTY-NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+G N L+ NGL + LK + PS +TYN L+ VF L D ++ A
Sbjct: 196 LGKLLNVLIRKCCRNGLWNVALEELGRLK-DLGYKPSRLTYNALVRVF---LEADRLDTA 251
Query: 249 F---QEIKDSNLSPNVFT--------------------------------YNYLIAGYMT 273
+ +E+ DS + + +T Y +I+G
Sbjct: 252 YLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCE 311
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
A ++ + + M++ +P+ TY +LL G L R ++I ++ +
Sbjct: 312 ASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRI 371
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW---LNVLLIRVYAKE-----DCLEE 385
++I AY + K L++ + + +P N+L+ + E D LE
Sbjct: 372 FNSLIHAYCRSGDYSYAYK---LLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLEL 428
Query: 386 MEKSINDAFEHKTSVTTVRI---MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYH 442
EK+ + + + V + RC+ + +K + ++ S G+ S Y
Sbjct: 429 AEKAYGEMLDAHVVLNKVNVSNLARCLCGA----GKFEKAYSIIREMMSKGFIPDTSTYS 484
Query: 443 SKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502
+ + + +V+ + +EM++ + T+ I+ ++ G ++ + M ++
Sbjct: 485 KVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRD 544
Query: 503 G 503
G
Sbjct: 545 G 545
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y+AL+ + G D+ Q +F + E P++ TY++LI + +D
Sbjct: 673 VYDALIDGFCKVGKLDEAQMVFTKMS-ERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSR 731
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ---MMKAGPVMPDTNTYLLLLRGYAH 308
+ +++ +PNV Y +I G GK +E Y+ MM+ P+ TY ++ G+
Sbjct: 732 MLENSCAPNVIIYTEMIDGLCKV---GKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGK 788
Query: 309 SGNLPRMEKIYELVKH 324
+G +++K EL++
Sbjct: 789 AG---KVDKCLELMRQ 801
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 23/147 (15%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ- 250
TY AL+ AY+ LF + E I P++VTY LI + +E A Q
Sbjct: 552 TYTALIHAYLKARKMSSANELFEMMLSEGCI-PNVVTYTALIDGHCK---SGQIEKACQI 607
Query: 251 -----------------EIKDSNL-SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
+I D N+ PN+FTY L+ G A + ++ +M
Sbjct: 608 YARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGC 667
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIY 319
P+ Y L+ G+ G L + ++
Sbjct: 668 EPNHIVYDALIDGFCKVGKLDEAQMVF 694
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 14/136 (10%)
Query: 200 YMYNGLSDKCQSLFRDLKK-----------EANISPSIVTYNTLISVFGRLLLVDHMEAA 248
Y Y+ L D+ LF+D + E + +P+++ Y +I ++ D
Sbjct: 707 YTYSSLIDR---LFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRL 763
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+++ PNV TY +I G+ A K E+ + M A P+ TY +L+
Sbjct: 764 MSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCA 823
Query: 309 SGNLPRMEKIYELVKH 324
+G L ++ + +K
Sbjct: 824 AGLLDDAHQLLDEMKQ 839
>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
Length = 1435
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 146/317 (46%), Gaps = 29/317 (9%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS---VFGRLLLVDHMEAAF 249
+NAL+ AY +GL +K +++F ++ K + P++ + N ++ V GRL D +
Sbjct: 783 WNALIHAYAESGLYEKARAVFDNMIKTGPL-PTVDSVNGMMRALIVDGRL---DELYVVV 838
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E++D N + T L+ + A +V +IY MKA +P+ + Y ++ H
Sbjct: 839 EELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLCHH 898
Query: 310 GNLPRMEKIYELVKHHVDGKEF----PLIRAMICAYSKCSVTDRIKKI-EALMR--LIPE 362
+ EL+ ++G F ++ A++ Y+ DR ++ +++ L P+
Sbjct: 899 NRF----RDVELMIAEMEGAGFKPDLAILNALLNMYTAAGNFDRTTQVYRSILEAGLEPD 954
Query: 363 KEYRPWLNVLLIRVYAKED---CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
++ L V+ R + E+ L EM K + ++ + ++++ +
Sbjct: 955 EDTYNTLIVMYCRSFRPEEGFTLLNEMGK--------RGLTPKLQSYKSLLAASAKAELR 1006
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
++ + S ++L RS+YH M +Y + + E++L M+ I+ + T I+
Sbjct: 1007 EQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHIL 1066
Query: 480 YYAYATCGQRRKVNQVL 496
+Y T GQ R+ VL
Sbjct: 1067 MTSYGTAGQPREAENVL 1083
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 114/469 (24%), Positives = 187/469 (39%), Gaps = 101/469 (21%)
Query: 76 RVRKDLTQTVSALRDELL-----ANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQL 130
R +D V+ L D +L A VDD VLD R + AFV ++ +
Sbjct: 119 RRAQDWRARVAGLADAVLELPPGAPVDD------VLDGA-----RASPDEVAFV--VRAV 165
Query: 131 G-SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT 189
G S R AL+ W R + P ++ + GR +A ++F A + T
Sbjct: 166 GESSWRRALDAFEWLARSSA---PASRA-VAVVLGVLGRARQDSIAEEVFLRFAGEG-AT 220
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI---SVFGRLLLVDHME 246
+ +NA++G Y +G D + L D + I P +V++NTLI S G L ++
Sbjct: 221 VQVFNAMMGVYARSGRFDDARQLL-DTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALD 279
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTA----------------------WMW------- 277
F E++ S L P+V TYN LI+ + W +
Sbjct: 280 LLF-EVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWTYNAMVSVH 338
Query: 278 ---GKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKH------ 324
GK EE +++ + MPD TY LL +A GN+ ++E E LVK
Sbjct: 339 GRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKNE 398
Query: 325 -------HVDGKEFPL---------IRAMICAYSKCSVT---------DRIKKIEALMRL 359
H+ GK L +RAM C + T +RI + ++
Sbjct: 399 ITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLED 458
Query: 360 IPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF-RC 416
+ + +P L LI YAK + E + + + V R+ ++ F R
Sbjct: 459 MTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMI--ASGVKPDRLAYLVMLDVFARS 516
Query: 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+K+ ++ + +R +Y +V A + + EE+E V+++ME
Sbjct: 517 GDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEVIQDME 565
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 7/197 (3%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
G ++ V+ + +A K K TYN ++ Y G D L+ +++ +P
Sbjct: 377 GNVDKVEHTCEQLVKAGFK--KNEITYNTMIHMYGKMGRLDLAVGLYDEMRA-MGCTPDA 433
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTY +I G++ + +++ D+ L P + ++ LI Y E +
Sbjct: 434 VTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDC 493
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV---KHHVDGKEFPLIRAMICAYSK 343
M A V PD YL++L +A SG+ +M +Y + + D + ++ + K
Sbjct: 494 MIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVALAKEDK 553
Query: 344 C-SVTDRIKKIEALMRL 359
C + + I+ +E L R+
Sbjct: 554 CEEIEEVIQDMELLCRM 570
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ Y + ++ +L ++ K ++P + +Y +L++ + L + + F+E
Sbjct: 957 TYNTLIVMYCRSFRPEEGFTLLNEMGKRG-LTPKLQSYKSLLAASAKAELREQADQIFEE 1015
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + N Y+ ++ Y A K E + +MK + P T +L+ Y +G
Sbjct: 1016 MRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQ 1075
Query: 312 LPR 314
PR
Sbjct: 1076 -PR 1077
>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
Length = 467
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 87/207 (42%), Gaps = 8/207 (3%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+I T+N L+ Y G F +K A PS VTYN LI+ F R + A
Sbjct: 177 SIITFNLLVDGYGKAGKMSNALPFFNQMKA-AGFQPSAVTYNMLIAGFCRARDMTRANRA 235
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
++K+ L P TY LI + GK EI M+ + D +TY +L+R
Sbjct: 236 LSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCM 295
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR---LIPEKEY 365
GN+ K+++ + + MI Y + + + K+ MR LIP
Sbjct: 296 EGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSAS 355
Query: 366 RPWLNVLLIRVYAKEDCLEEMEKSIND 392
L IRV K+D +E E ++D
Sbjct: 356 YG----LTIRVLCKDDKCQEAEALLDD 378
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY AL+ Y +G +K +LF ++++ + P++ TYN LI + R + + F E
Sbjct: 75 TYTALMHGYFTHGQREKGFALFEEMRR-GGVEPNLYTYNCLIGEWCRTGEFERARSLFDE 133
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + NV +YN LIAG ++ MM+ P T+ LL+ GY +G
Sbjct: 134 MPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGK 193
Query: 312 L 312
+
Sbjct: 194 M 194
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 52/263 (19%), Positives = 102/263 (38%), Gaps = 37/263 (14%)
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F E+ L+PN TY L+ GY T K +++ M+ G V P+ TY L+ +
Sbjct: 61 FDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCR 120
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+G R +++ E P +R ++ +V I L R + W
Sbjct: 121 TGEFERARSLFD---------EMP-VRGIV-----RNVVSYNTLIAGLCR-----HGKLW 160
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
L+ + E + S+ T + +V Y + + F +
Sbjct: 161 DAAKLLDMMRTEGT--------------RPSIITFNL---LVDGYGKAGKMSNALPFFNQ 203
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
++AG++ Y+ + + R + L +M+ ++ +K T+ I+ ++A
Sbjct: 204 MKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENH 263
Query: 489 RRKVNQVLGLMCKNGYDVPVNAF 511
K ++L M K G +V + +
Sbjct: 264 MGKAFEILAGMEKAGLEVDAHTY 286
>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
Length = 410
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 87/207 (42%), Gaps = 8/207 (3%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+I T+N L+ Y G F +K A PS VTYN LI+ F R + A
Sbjct: 177 SIITFNLLVDGYGKAGKMSNALPFFNQMKA-AGFQPSAVTYNMLIAGFCRARDMTRANRA 235
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
++K+ L P TY LI + GK EI M+ + D +TY +L+R
Sbjct: 236 LSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCM 295
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR---LIPEKEY 365
GN+ K+++ + + MI Y + + + K+ MR LIP
Sbjct: 296 EGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSAS 355
Query: 366 RPWLNVLLIRVYAKEDCLEEMEKSIND 392
L IRV K+D +E E ++D
Sbjct: 356 YG----LTIRVLCKDDKCQEAEALLDD 378
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY AL+ Y +G +K +LF ++++ + P++ TYN LI + R + + F E
Sbjct: 75 TYTALMHGYFTHGQREKGFALFEEMRR-GGVEPNLYTYNCLIGEWCRTGEFERARSLFDE 133
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + NV +YN LIAG ++ MM+ P T+ LL+ GY +G
Sbjct: 134 MPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGK 193
Query: 312 L 312
+
Sbjct: 194 M 194
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 52/269 (19%), Positives = 106/269 (39%), Gaps = 49/269 (18%)
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F E+ L+PN TY L+ GY T K +++ M+ G V P+ TY L+ +
Sbjct: 61 FDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCR 120
Query: 309 SGNLPRMEKIYE------LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE 362
+G R +++ +V++ V + + A +C + K + D K L+ ++
Sbjct: 121 TGEFERARSLFDEMPVRGIVRNVV---SYNTLIAGLCRHGK--LWDAAK----LLDMMRT 171
Query: 363 KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
+ RP S+ T + +V Y + +
Sbjct: 172 EGTRP-------------------------------SIITFNL---LVDGYGKAGKMSNA 197
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482
F + ++AG++ Y+ + + R + L +M+ ++ +K T+ I+ +
Sbjct: 198 LPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDS 257
Query: 483 YATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
+A K ++L M K G +V + +
Sbjct: 258 FARENHMGKAFEILAGMEKAGLEVDAHTY 286
>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
Length = 683
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 18/187 (9%)
Query: 175 AADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS-----LFRDLKKEA-NISPSIVT 228
A +F E + + + +YN LL NGL D+ +S L + + + P +V+
Sbjct: 36 ARHVFDELLRRGIPDVFSYNILL-----NGLCDENRSQEALELLHIMADDGGDCPPDVVS 90
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y+T+I+ F + +D + + E+ D +SPNV TYN +IA A K E+ M
Sbjct: 91 YSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMV 150
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE-----FPLIRAMICAYSK 343
VMPD TY ++ G+ SG P+ E I L K DG E + + +C +
Sbjct: 151 KSGVMPDCMTYNSIVHGFCSSGQ-PK-EAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGR 208
Query: 344 CSVTDRI 350
C+ +I
Sbjct: 209 CTEARKI 215
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TY+ L+ Y G D+ L + + P VTY+TLI+ + ++ + F
Sbjct: 403 IITYSTLIDGYCLAGKMDEATKLLASMVS-VGMKPDCVTYSTLINGYCKISRMKDALVLF 461
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+E++ S +SP++ TYN ++ G +E+Y + + +TY ++L G
Sbjct: 462 REMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHG 517
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
++ L+ AY ++ +F ++++ ++P+ VTY +I + + V+ F++
Sbjct: 265 VFSILVCAYAKQEKVEEAMLVFSKMRQQG-LNPNAVTYGAVIGILCKSGRVEDAMLYFEQ 323
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ D LSP YN LI G T W + EE I +M+ G + +T + ++ + G
Sbjct: 324 MIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL-NTIFFNSIIDSHCKEG 382
Query: 311 NLPRMEKIYELV 322
+ EK+++L+
Sbjct: 383 RVIESEKLFDLM 394
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N+++ ++ G + + LF DL + P I+TY+TLI + +D +
Sbjct: 371 FNSIIDSHCKEGRVIESEKLF-DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASM 429
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ P+ TY+ LI GY +++ M++ V PD TY ++L+G
Sbjct: 430 VSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQG 482
>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 673
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 103/226 (45%), Gaps = 9/226 (3%)
Query: 145 RRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYN 203
R G + Y I G+ N + A D+F + ++ + T+N L+ A+
Sbjct: 398 REMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKG 457
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G D LF++++ E+N P TYN +I++ G +E E+K+ L PN+ T
Sbjct: 458 GRHDCAMELFKEMR-ESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIIT 516
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
Y L+ Y + + + + + MKA + P Y L+ YA G + + ++
Sbjct: 517 YTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMR 576
Query: 324 HHVDGKEFP--LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
DG E ++ ++I A+ + R+ + ++++ + E ++RP
Sbjct: 577 --ADGLEASTVVLNSLINAFGE---DRRVVEAFSVLQFMKENDFRP 617
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 85/207 (41%), Gaps = 17/207 (8%)
Query: 112 CLFRRHSNGYAFVELMKQLGSRP-----RLALEVLNWRRRQAGYGTPMT--KEE------ 158
C RH + M++ P + + +L + R G T M+ KE+
Sbjct: 455 CKGGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNI 514
Query: 159 --YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRD 215
YT + GR A D LK T Y+AL+ AY GL+D ++ +
Sbjct: 515 ITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKA 574
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
++ + + S V N+LI+ FG V + Q +K+++ P+V TY L+ +
Sbjct: 575 MRAD-GLEASTVVLNSLINAFGEDRRVVEAFSVLQFMKENDFRPDVITYTTLMKALIRVE 633
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLL 302
+ KV IY+ M PD +L
Sbjct: 634 QFDKVPVIYEEMITSGCAPDRKARAML 660
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/355 (20%), Positives = 132/355 (37%), Gaps = 54/355 (15%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YNALL Y+ G + + D E ++P TY+ L+ + R + +E
Sbjct: 306 AYNALLKGYVKIGSLKNAEHVL-DEMSECGVAPDEATYSLLVDAYTRAGRWESARILLKE 364
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + P+ + ++ ++AG+ W K + + M A V PD + Y +++ +
Sbjct: 365 MEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNC 424
Query: 312 LPRMEKIYE----------------LVKHHVDGKE-------FPLIRAMICAYSKCSVT- 347
L ++ L+ H G F +R C +
Sbjct: 425 LGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNI 484
Query: 348 --------DRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKE-------DCLEEMEK 388
+R +E +M + E+ P N++ L+ VY + DC+E M+
Sbjct: 485 MINLLGEQERWVGVETMMSEMKEQGLVP--NIITYTTLVDVYGRSGRYKEAIDCIEAMKA 542
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
D K S T + +V++Y + D N VK + G + +S + +
Sbjct: 543 ---DGL--KPSPT---MYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAF 594
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
RRV E SVL+ M+ T+ + A Q KV + M +G
Sbjct: 595 GEDRRVVEAFSVLQFMKENDFRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSG 649
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 1/140 (0%)
Query: 173 DLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
D A +L A A L AL+ A G + ++LF + I P YN
Sbjct: 250 DAALELLASAQAIGLTPRSNAVTALISALGIAGRVPEAEALFLEFFLAGEIKPRTRAYNA 309
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L+ + ++ + + E E+ + ++P+ TY+ L+ Y A W + + M+A
Sbjct: 310 LLKGYVKIGSLKNAEHVLDEMSECGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADG 369
Query: 292 VMPDTNTYLLLLRGYAHSGN 311
V P + + +L G+ G+
Sbjct: 370 VKPSSYVFSRILAGFRDRGD 389
>gi|26452823|dbj|BAC43491.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 702
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/371 (22%), Positives = 156/371 (42%), Gaps = 27/371 (7%)
Query: 42 PNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDAR--VRKDLTQTVSALRDELLANV--- 96
PN + D+ +F + +T P+ V +L +T+ R+ +L NV
Sbjct: 124 PNEADVCDVITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMK 183
Query: 97 -----DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYG 151
DL+K ++ DE + + + + + P+ A+E W + + +G
Sbjct: 184 VFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVE---WFEKMSSFG 240
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQ 210
I GR NVD+A L+ A + + T++ L+ Y +G D C
Sbjct: 241 CEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCL 300
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+++ ++K + P++V YN LI GR + ++++ + +PN TY L+
Sbjct: 301 NIYEEMKA-LGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRA 359
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH----HV 326
Y A IY+ MK + Y LL A G + +I++ +K+
Sbjct: 360 YGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDP 419
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLE 384
D F ++I Y+ CS R+ + EA + + E + P L VL +I+ Y K ++
Sbjct: 420 DSWTF---SSLITVYA-CS--GRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVD 473
Query: 385 EMEKSINDAFE 395
++ ++ + E
Sbjct: 474 DVVRTFDQVLE 484
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 1/138 (0%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y ++ GR D A ++ E K L T+ YN LL G D+ +F+D+K
Sbjct: 353 YAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMK 412
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P T+++LI+V+ V EAA +++++ P +F +I Y A
Sbjct: 413 NCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQV 472
Query: 278 GKVEEIYQMMKAGPVMPD 295
V + + + PD
Sbjct: 473 DDVVRTFDQVLELGITPD 490
>gi|356509602|ref|XP_003523536.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Glycine max]
Length = 598
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 10/230 (4%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
L + TYN L+ D+ +SL +++ +P +V+Y T+IS + + ++
Sbjct: 208 LPDVITYNTLIHGLCRINEVDRARSLLKEVCLNGEFAPDVVSYTTIISGYCKFSKMEEGN 267
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
F E+ S +PN FT+N LI G+ +Y+ M +PD T+ L+ GY
Sbjct: 268 LLFGEMIRSGTAPNTFTFNALIGGFGKLGDMASALALYEKMLVQGCVPDVATFTSLINGY 327
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY- 365
G + + ++ + G ++ S +R+ K ++RL+ E +
Sbjct: 328 FRLGQVHQAMDMWHKMNDKNIGATLYTFSVLV---SGLCNNNRLHKARDILRLLNESDIV 384
Query: 366 -RPWLNVLLIRVYAKEDCLEEMEK-----SINDAFEHKTSVTTVRIMRCI 409
+P++ +I Y K ++E K +N K + T + I C+
Sbjct: 385 PQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCM 434
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 1/131 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ T+ +L+ Y G + ++ + + NI ++ T++ L+S +
Sbjct: 317 VATFTSLINGYFRLGQVHQAMDMWHKMN-DKNIGATLYTFSVLVSGLCNNNRLHKARDIL 375
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + +S++ P F YN +I GY + + +I M+ PD T+ +L+ G+
Sbjct: 376 RLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMK 435
Query: 310 GNLPRMEKIYE 320
G +P I+
Sbjct: 436 GRMPEAIGIFH 446
>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
sulphuraria]
Length = 821
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 97/219 (44%), Gaps = 18/219 (8%)
Query: 119 NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGT--PMTKEEYTKGIKFAGRINNVDL-- 174
N Y + L++ LG + L + L+ RR + P T Y IK R D
Sbjct: 346 NIYTYSALIETLG-KGGLCVRALSQFRRMSRIDNIAPNTVT-YNAVIKIVSRCKRNDCGG 403
Query: 175 ---AADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
A L E A K + + TY L+ A+ ++ LF+++K EAN+ P+ Y+
Sbjct: 404 ITRAMSLLREMATKGCIPDVVTYATLIDAFSKRMEPERALKLFQEMK-EANVKPNNYCYS 462
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
+LIS F R V+ A F+E+ + P+VF +N LI G+ K EIY M+
Sbjct: 463 SLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKL 522
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPR-------MEKIYELV 322
+ PD T+ L+ + N R M +IY L
Sbjct: 523 QIQPDRITFNALISASGKAKNSIRALEAMGDMTEIYGLT 561
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 6/195 (3%)
Query: 185 KHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
+H++ I TY+AL+ GL + S FR + + NI+P+ VTYN +I + R D
Sbjct: 341 EHIQPNIYTYSALIETLGKGGLCVRALSQFRRMSRIDNIAPNTVTYNAVIKIVSRCKRND 400
Query: 244 -----HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298
+ +E+ P+V TY LI + + +++Q MK V P+
Sbjct: 401 CGGITRAMSLLREMATKGCIPDVVTYATLIDAFSKRMEPERALKLFQEMKEANVKPNNYC 460
Query: 299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
Y L+ + +G + R I+E + H + A+I + K D+ +I MR
Sbjct: 461 YSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMR 520
Query: 359 LIPEKEYRPWLNVLL 373
+ + R N L+
Sbjct: 521 KLQIQPDRITFNALI 535
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 3/166 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I R V+ A +F E ++ + + +NAL+ + DK ++ ++
Sbjct: 461 YSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMR 520
Query: 218 KEANISPSIVTYNTLISVFGRLL-LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
K I P +T+N LIS G+ + +EA + L+P+ +YN LI +
Sbjct: 521 K-LQIQPDRITFNALISASGKAKNSIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSGD 579
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
+ K E+++ M+ + P T T+ L+ G + S +L KI +L+
Sbjct: 580 FTKAYEVFEEMRTKGIRPCTVTFNALIYGASRSHDLAASFKIVDLM 625
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N + A S+K L +++ ISPS VT NT++ GR +D ME F
Sbjct: 671 TFNTFIDAVGKLDSSEKMFELLSEMESRG-ISPSKVTLNTIVGCCGRRGKIDLMERGFHM 729
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
+ L P+ T++ LI Y++ + K Y K + ++N + LL
Sbjct: 730 FHEKRLEPDSVTFSLLIENYVSHHLLDKAVIAYHNCKRQQLELNSNVVMHLL 781
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 80/230 (34%), Gaps = 57/230 (24%)
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALL----------- 197
YG + Y I G+ + A ++F E K ++ T+NAL+
Sbjct: 558 YGLTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALIYGASRSHDLAA 617
Query: 198 ---------------GAYMYNGLSDKCQ------SLFRDLKK--EANISPSIVTYNTLIS 234
AY N L C + F L+K + + P VT+NT I
Sbjct: 618 SFKIVDLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLEKFKQLGVHPDNVTFNTFID 677
Query: 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294
G+L + M E++ +SP+ T N ++ +E + M + P
Sbjct: 678 AVGKLDSSEKMFELLSEMESRGISPSKVTLNTIVGCCGRRGKIDLMERGFHMFHEKRLEP 737
Query: 295 DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC 344
D+ T+ LL+ Y V HH L+ + AY C
Sbjct: 738 DSVTFSLLIENY---------------VSHH-------LLDKAVIAYHNC 765
>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
Length = 577
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 110/248 (44%), Gaps = 9/248 (3%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TY+A++ Y G D+ + +F L+ + I P+I +Y+ LI+ + + + F
Sbjct: 308 IITYSAIMDGYCLRGQVDRARRVFNVLRDKG-IKPNIFSYSILINGYCKKKNLAKAMQLF 366
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAH 308
EI L P+ TY+ ++ G + G ++I+ +M++ GP PD + LL GY
Sbjct: 367 GEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPT-PDICLHSTLLFGYFK 425
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G + ++ ++ + + +I K DR+++ A+ +P P
Sbjct: 426 YGLVEEAMLLFSKLERNREDTNISFYTVVINGLCK---NDRVREAHAIFEKLPSIGLIPD 482
Query: 369 LNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
+ ++I + +E +E+ K I E I+ +FR N + ++ +F+
Sbjct: 483 VRTYNVMITGFCREGLFDEV-KGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFM 541
Query: 427 KRAESAGW 434
K G+
Sbjct: 542 KEMAGRGF 549
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 12/193 (6%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y ++ G ++K SL R + ++ N P + TY+ +I + + +D E+
Sbjct: 171 YGTVMNGLSKRGHTEKTLSLLR-IMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEM 229
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
K N+ PN+FTYN LI G W KV+ + M + P+ +T+ +L+ G G
Sbjct: 230 KQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEG-- 287
Query: 313 PRMEKIYELVKHHVD-GKEFPLI--RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP-- 367
++E E+++H ++ G E +I A++ Y DR +++ ++R +K +P
Sbjct: 288 -KVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLR---DKGIKPNI 343
Query: 368 WLNVLLIRVYAKE 380
+ +LI Y K+
Sbjct: 344 FSYSILINGYCKK 356
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 130/318 (40%), Gaps = 15/318 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ ++ A + D +L ++K++ NI P+I TYN+LI +L + ++ E
Sbjct: 205 TYSIVIDALCKDINLDAAINLLNEMKQK-NIPPNIFTYNSLIDGLCKLGQWEKVKTLLSE 263
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + N++PNV T++ LI G +E+ + M V PD TY ++ GY G
Sbjct: 264 MVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQ 323
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP---- 367
+ R +++ +++ +I Y K + K L I +K +P
Sbjct: 324 VDRARRVFNVLRDKGIKPNIFSYSILINGYCK---KKNLAKAMQLFGEISQKGLKPDTVT 380
Query: 368 WLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
+ +L LI V D K I D + + ++ YF+ V++
Sbjct: 381 YSTILHGLIEVGRIGDA-----KKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLL 435
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
+ E S Y + RV E ++ +++ + + +T+ +M +
Sbjct: 436 FSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCR 495
Query: 486 CGQRRKVNQVLGLMCKNG 503
G +V +L M NG
Sbjct: 496 EGLFDEVKGILRKMEDNG 513
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 124/297 (41%), Gaps = 37/297 (12%)
Query: 38 LTKSPN-HSFT---RDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDE-- 91
L +PN H+F+ LC ++R + E PD T SA+ D
Sbjct: 267 LNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPD-------IITYSAIMDGYC 319
Query: 92 LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLA--LEVLNWRRRQAG 149
L VD +VF VL +KG N +++ L+ + LA +++ ++
Sbjct: 320 LRGQVDRARRVFNVLRDKGI-----KPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGL 374
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDK 208
+T G+ GRI + A +F E I ++ LL Y GL ++
Sbjct: 375 KPDTVTYSTILHGLIEVGRIGD---AKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEE 431
Query: 209 CQSLFRDLKK---EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
LF L++ + NIS Y +I+ + V A F+++ L P+V TYN
Sbjct: 432 AMLLFSKLERNREDTNIS----FYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYN 487
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
+I G+ ++ +V+ I + M+ + TY ++++G+ S KI E+V
Sbjct: 488 VMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRS------NKISEIV 538
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 77/151 (50%), Gaps = 2/151 (1%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A + +E N+ + + TY+++L + G S++ SLF+ + E N+ P VT+N L+
Sbjct: 136 AMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMV-ERNVMPDTVTFNILV 194
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ ++ + F+ + + + PNV TYN L+ GY + + ++++ +M
Sbjct: 195 DGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCA 254
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
P +Y +L++G+ SG + + + + H
Sbjct: 255 PSVRSYNILIKGHCKSGRIDEAKGLLAEMSH 285
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 1/166 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ ++ G + L + ++ E P++V Y+T+I + L+ E
Sbjct: 84 TYSTIINGLCKMGSTTMAIQLLKKME-EKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSE 142
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + +SPNV TY+ ++ G+ + +++ M VMPDT T+ +L+ G + G
Sbjct: 143 MVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGM 202
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357
+ + ++E + A++ Y S D +K+ +M
Sbjct: 203 ILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIM 248
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 13/135 (9%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV---FGRLLLVDHMEAA 248
TY+ +L G D+ L + ++ E+ I P+I Y LI FG+L EAA
Sbjct: 329 TYSIVLDGLCKQGHLDEAFELLKAMQ-ESKIEPNIFIYTILIQGMCNFGKL------EAA 381
Query: 249 ---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
F + + P+V TY +I+G + + + E+++ M +P++ TY ++++G
Sbjct: 382 RELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQG 441
Query: 306 YAHSGNLPRMEKIYE 320
+ +G+ ++ E
Sbjct: 442 FLRNGDTSNAGRLIE 456
>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680 [Vitis vinifera]
gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
Length = 592
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 132/319 (41%), Gaps = 36/319 (11%)
Query: 27 PKTLPPLSVFTLTK--SPNHSFTRDLCAPATHTVFPTLVRLLSET---LTYPDARVRKDL 81
P +L P S+ + K S H F + + T T F ++LSE L + +R K+
Sbjct: 78 PHSLSPPSLLSFFKWLSTQHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNS 137
Query: 82 TQTV------------SALRDELLANV-------DDLDKVFRVLDEKGSCLFRRHSNGYA 122
+V S L +L N D + FR++ K + HS GY
Sbjct: 138 ASSVFTSVLEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLV-RKHNLQIPFHSCGYL 196
Query: 123 FVELMKQLGSRPRLAL--EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
F LMK + P A E+L+ G P ++ + + + ++ A LF
Sbjct: 197 FDRLMKLNLTSPAWAFYEEILDC-------GYPPDVCKFNVLMHRLCKEHKINEAQLLFG 249
Query: 181 EAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
E + L+ T+ ++N L+ Y +G D+ L R E + P + TY+ LI+ +
Sbjct: 250 EIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKR-FMMENRVFPDVFTYSVLINGLCKE 308
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
+D F E+ D L PN T+ LI G+ EIYQ M V PD TY
Sbjct: 309 GQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITY 368
Query: 300 LLLLRGYAHSGNLPRMEKI 318
L+ G G+L +K+
Sbjct: 369 NTLINGLCKVGDLREAKKL 387
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P + +N L+ + ++ + F EI L P V ++N LI GY + + +
Sbjct: 223 PDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRL 282
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ M V PD TY +L+ G G L K++
Sbjct: 283 KRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLF 318
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 1/126 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+ AL+ + G + + R++ EA I P TY +I F + V +E+
Sbjct: 438 FTALISGFCREGQVIEAERTLREML-EAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEM 496
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ P V TYN L+ G + M V+PD TY +LL G+ GN
Sbjct: 497 QCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLEGHCKHGNR 556
Query: 313 PRMEKI 318
+K+
Sbjct: 557 EDFDKL 562
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 59/299 (19%), Positives = 128/299 (42%), Gaps = 7/299 (2%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
++ Q LF ++ K + P++V++NTLI+ + + +D + + ++ + P+VFTY+
Sbjct: 242 NEAQLLFGEIGKRG-LRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSV 300
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
LI G +++ M ++P+ T+ L+ G+ +G +IY+ +
Sbjct: 301 LINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLR-- 358
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLE 384
G + +I C V D +++ + L+ + ++ +P + +LI KE LE
Sbjct: 359 KGVKPDVITYNTLINGLCKVGD-LREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLE 417
Query: 385 EMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSK 444
+ + + + V ++S + R V + ++ AG + + Y
Sbjct: 418 SALEIRKEMVKEGIELDNVAFT-ALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMV 476
Query: 445 MVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ + + V+ +LKEM+ T+ ++ GQ + N +L M G
Sbjct: 477 IHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLG 535
>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
Length = 573
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 1/171 (0%)
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKC 209
+G P YT + R V+ + L E L T+ T N++L + G+ +
Sbjct: 290 HGIPANMVTYTSLVSGLCREGKVEDSMKLVEEMEELGLATLPTLNSVLNGFCKKGMMVEA 349
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+ + D + + P++VTYNTLI + RL + AA + +SP+V TYN LI
Sbjct: 350 EG-WVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLIT 408
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
G+ T+ W V + MK V D TY +L+ G + + K+ +
Sbjct: 409 GFTTSTDWRSVSGLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLD 459
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/311 (18%), Positives = 131/311 (42%), Gaps = 15/311 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLLLVDHMEAA 248
T+N ++ G K + +D++ + PS+VTYNTLI + GR + H++
Sbjct: 190 TFNIVISGLCKTGQLRKAGDVAKDMRGWG-LMPSVVTYNTLIDGYYKWGRAGKMYHVDML 248
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+E+ + +SPNV T+N LI GY ++++ M+ + + TY L+ G
Sbjct: 249 LKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCR 308
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G + K+ E ++ + P + +++ + K + + + E + + +K +P
Sbjct: 309 EGKVEDSMKLVEEME-ELGLATLPTLNSVLNGFCKKGM---MVEAEGWVDGMAQKGMKP- 363
Query: 369 LNVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
NV+ LI Y + ++E + A K V+ C+++ + ++
Sbjct: 364 -NVVTYNTLIDGYQRLGKMKE-ATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSG 421
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
+ + G + Y+ + + V + +L EM ++ +T+ + +
Sbjct: 422 LLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFC 481
Query: 485 TCGQRRKVNQV 495
G + + +
Sbjct: 482 EKGDAKGAHDI 492
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/339 (21%), Positives = 127/339 (37%), Gaps = 60/339 (17%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY------------ 271
PS + N L++ R VD E AF+ +SP+ FT+N +I+G
Sbjct: 151 PSAFSVNALLAALVRADRVDLAERAFRAALRRRVSPDKFTFNIVISGLCKTGQLRKAGDV 210
Query: 272 ---MTAW-----------------MWGKVEEIY-------QMMKAGPVMPDTNTYLLLLR 304
M W WG+ ++Y +M +AG + P+ T+ +L+
Sbjct: 211 AKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAG-ISPNVVTFNVLIN 269
Query: 305 GYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE 364
GY N+ K++E ++ H + M+ S S R K+E M+L+ E E
Sbjct: 270 GYCKESNITAAIKVFEEMRQH------GIPANMVTYTSLVSGLCREGKVEDSMKLVEEME 323
Query: 365 -----YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
P LN +L + K+ + E E + D K V ++ Y R +
Sbjct: 324 ELGLATLPTLNSVL-NGFCKKGMMVEAEGWV-DGMAQKGMKPNVVTYNTLIDGYQRLGKM 381
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
+ G Y+ + + + + +L EM+ + T+ ++
Sbjct: 382 KEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKADLVTYNVL 441
Query: 480 YYAYATCGQRRKVNQVLGLMCKNG-------YDVPVNAF 511
A G+ RK ++L M + G Y+ +N F
Sbjct: 442 IGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGF 480
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK--EANISPSIVTYNTLISVFGRLLLVDH 244
+ ++ TYN L+ Y G + K + LK+ +A ISP++VT+N LI+ + + +
Sbjct: 220 MPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGISPNVVTFNVLINGYCKESNITA 279
Query: 245 MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE----IYQMMKAG-PVMPDTNTY 299
F+E++ + N+ TY L++G GKVE+ + +M + G +P N+
Sbjct: 280 AIKVFEEMRQHGIPANMVTYTSLVSGLCRE---GKVEDSMKLVEEMEELGLATLPTLNS- 335
Query: 300 LLLLRGYAHSGNLPRME 316
+L G+ G + E
Sbjct: 336 --VLNGFCKKGMMVEAE 350
>gi|168000162|ref|XP_001752785.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695948|gb|EDQ82289.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 482
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 101/230 (43%), Gaps = 20/230 (8%)
Query: 97 DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTK 156
+D +++F+ LDE + + ++ G + + E R+ G G PMT
Sbjct: 194 NDAERIFKCLDESAEA----KPDARLYNLMLHTYGKAGKFS-EQQALFRQMKGAGVPMTV 248
Query: 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKT------IGTYNALLGAYMYNGLSDKCQ 210
+ + F + + AEA +H++ + TY L+ AY ++
Sbjct: 249 VTFNSLMAFQKTVAD--------AEACLRHMQAAKIKPDVITYTGLINAYSKARRVEEAH 300
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+FR++ + + PS + YNTL+ + + V+ E+ F+ + P++ +Y L+A
Sbjct: 301 VVFREMVA-SGLRPSRIAYNTLLDAYAKCKEVEGAESLFKSMGQDRCRPDIRSYTTLLAA 359
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
Y K E + + MK + P+ TY L++GY ++ M + +E
Sbjct: 360 YANTGNMKKAERLLKRMKQAGLEPNVVTYGTLMQGYTSVHDINAMLQTFE 409
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 124/290 (42%), Gaps = 22/290 (7%)
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
I +N +I+ +G+L E +F E+++ L PNV + L+ + + + E IY
Sbjct: 106 GIHDFNLMIAAYGKLGQPGIAELSFTEMREVGLEPNVACFTSLLEAHARTGNFVRAESIY 165
Query: 285 Q-MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK-EFPLIRAMICAYS 342
Q M+K GP P TY + + + E+I++ + + K + L M+ Y
Sbjct: 166 QEMLKTGPA-PTEVTYQVYINALCKAERFNDAERIFKCLDESAEAKPDARLYNLMLHTYG 224
Query: 343 KCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA-------KEDCLEEMEKSINDAFE 395
K + + +AL R + P V + A E CL M+ A +
Sbjct: 225 KAG---KFSEQQALFRQMKGAGV-PMTVVTFNSLMAFQKTVADAEACLRHMQ-----AAK 275
Query: 396 HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVE 455
K V T ++++Y + V++ + ++G R R Y++ + YA + VE
Sbjct: 276 IKPDVITY---TGLINAYSKARRVEEAHVVFREMVASGLRPSRIAYNTLLDAYAKCKEVE 332
Query: 456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
ES+ K M + +++ + AYA G +K ++L M + G +
Sbjct: 333 GAESLFKSMGQDRCRPDIRSYTTLLAAYANTGNMKKAERLLKRMKQAGLE 382
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ T+N+L+ ++ C R ++ A I P ++TY LI+ + + V+
Sbjct: 247 TVVTFNSLMAFQKTVADAEAC---LRHMQA-AKIKPDVITYTGLINAYSKARRVEEAHVV 302
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F+E+ S L P+ YN L+ Y E +++ M PD +Y LL YA+
Sbjct: 303 FREMVASGLRPSRIAYNTLLDAYAKCKEVEGAESLFKSMGQDRCRPDIRSYTTLLAAYAN 362
Query: 309 SGNLPRMEKIYELVKH 324
+GN+ + E++ + +K
Sbjct: 363 TGNMKKAERLLKRMKQ 378
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 2/151 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I + V+ A +F E L+ + YN LL AY + +SLF+ +
Sbjct: 283 YTGLINAYSKARRVEEAHVVFREMVASGLRPSRIAYNTLLDAYAKCKEVEGAESLFKSMG 342
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ P I +Y TL++ + + E + +K + L PNV TY L+ GY +
Sbjct: 343 QD-RCRPDIRSYTTLLAAYANTGNMKKAERLLKRMKQAGLEPNVVTYGTLMQGYTSVHDI 401
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ + ++ ++ + P++ + LL+R +
Sbjct: 402 NAMLQTFEDLQKAGIKPNSTIFTLLVRTFGQ 432
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/312 (20%), Positives = 131/312 (41%), Gaps = 25/312 (8%)
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
NAL A +N + +F+ L + A P YN ++ +G+ +A F+++K
Sbjct: 185 NALCKAERFN----DAERIFKCLDESAEAKPDARLYNLMLHTYGKAGKFSEQQALFRQMK 240
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
+ + V T+N L+A T E + M+A + PD TY L+ Y+ +
Sbjct: 241 GAGVPMTVVTFNSLMAFQKTV---ADAEACLRHMQAAKIKPDVITYTGLINAYSKA---R 294
Query: 314 RMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
R+E+ + + + V P ++ AY+KC ++ E+L + + + RP +
Sbjct: 295 RVEEAHVVFREMVASGLRPSRIAYNTLLDAYAKCK---EVEGAESLFKSMGQDRCRPDIR 351
Query: 371 --VLLIRVYAKEDCLEEME---KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
L+ YA +++ E K + A VT +M+ Y + ++ +
Sbjct: 352 SYTTLLAAYANTGNMKKAERLLKRMKQAGLEPNVVTYGTLMQ----GYTSVHDINAMLQT 407
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
+ + AG + +++ + + Q E S K+M + +++ + A T
Sbjct: 408 FEDLQKAGIKPNSTIFTLLVRTFGQQEDFESALSWFKKMLDSGCPADQRSRAALMDACQT 467
Query: 486 CGQRRKVNQVLG 497
Q+++V + G
Sbjct: 468 SEQKQEVLEYFG 479
>gi|42572723|ref|NP_974457.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646343|gb|AEE79864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 97/195 (49%), Gaps = 9/195 (4%)
Query: 168 RINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+ N + A +F+ K + ++ TYN+L M S K S D + ++I P +
Sbjct: 266 KAGNYEKARKVFSSMVGKGVPQSTVTYNSL----MSFETSYKEVSKIYDQMQRSDIQPDV 321
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
V+Y LI +GR + + F+E+ D+ + P YN L+ + + M + + +++
Sbjct: 322 VSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKS 381
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR--AMICAYSKC 344
M+ + PD +Y +L Y ++ ++ EK ++ +K VDG E ++ +I Y+K
Sbjct: 382 MRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIK--VDGFEPNIVTYGTLIKGYAKA 439
Query: 345 SVTDRIKKIEALMRL 359
+ +++ ++ MRL
Sbjct: 440 NDVEKMMEVYEKMRL 454
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/330 (20%), Positives = 139/330 (42%), Gaps = 46/330 (13%)
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ AY G + + + L K + +P++++Y L+ +GR ++ EA F+ ++ S
Sbjct: 152 LITAYGKLGNFNGAERVLSVLSKMGS-TPNVISYTALMESYGRGGKCNNAEAIFRRMQSS 210
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM---KAGPVMPDTNTYLLLLRGYAHSGNL 312
P+ TY ++ ++ + + EE+++ + K P+ PD Y +++ Y +GN
Sbjct: 211 GPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNY 270
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL--N 370
+ K++ + GK P ++ + S S K++ + + + +P +
Sbjct: 271 EKARKVF----SSMVGKGVP--QSTVTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSY 324
Query: 371 VLLIRVYAK----EDCLEEMEKSIN--------------DAF-------EHKTSVTTVRI 405
LLI+ Y + E+ L E+ ++ DAF + KT ++R
Sbjct: 325 ALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRR 384
Query: 406 MR---------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
R ++S+Y + ++ F KR + G+ Y + + YA VE+
Sbjct: 385 DRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEK 444
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATC 486
M V ++M I ++ + A C
Sbjct: 445 MMEVYEKMRLSGIKANQTILTTIMDASGRC 474
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/289 (19%), Positives = 114/289 (39%), Gaps = 18/289 (6%)
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
S + + LI+ +G+L + E + +PNV +Y L+ Y E I+
Sbjct: 145 SEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIF 204
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL------IRAMI 338
+ M++ P TY ++L+ + E+++E + +D K+ PL MI
Sbjct: 205 RRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETL---LDEKKSPLKPDQKMYHMMI 261
Query: 339 CAYSKCSVTDRIKKIEALM--RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396
Y K ++ +K+ + M + +P+ V + + E +E+ K I D +
Sbjct: 262 YMYKKAGNYEKARKVFSSMVGKGVPQS------TVTYNSLMSFETSYKEVSK-IYDQMQR 314
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
V ++ +Y R ++ + + AG R Y+ + +A VE+
Sbjct: 315 SDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQ 374
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
++V K M +I ++ M AY + + +G++
Sbjct: 375 AKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFE 423
>gi|9755842|emb|CAC01928.1| 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana]
Length = 702
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/371 (22%), Positives = 156/371 (42%), Gaps = 27/371 (7%)
Query: 42 PNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDAR--VRKDLTQTVSALRDELLANV--- 96
PN + D+ +F + +T P+ V +L +T+ R+ +L NV
Sbjct: 124 PNEADVCDVITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMK 183
Query: 97 -----DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYG 151
DL+K ++ DE + + + + + P+ A+E W + + +G
Sbjct: 184 VFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVE---WFEKMSSFG 240
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQ 210
I GR NVD+A L+ A + + T++ L+ Y +G D C
Sbjct: 241 CEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCL 300
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+++ ++K + P++V YN LI GR + ++++ + +PN TY L+
Sbjct: 301 NIYEEMKA-LGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRA 359
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH----HV 326
Y A IY+ MK + Y LL A G + +I++ +K+
Sbjct: 360 YGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDP 419
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLE 384
D F ++I Y+ CS R+ + EA + + E + P L VL +I+ Y K ++
Sbjct: 420 DSWTF---SSLITVYA-CS--GRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVD 473
Query: 385 EMEKSINDAFE 395
++ ++ + E
Sbjct: 474 DVVRTFDQVLE 484
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 1/138 (0%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y ++ GR D A ++ E K L T+ YN LL G D+ +F+D+K
Sbjct: 353 YAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMK 412
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P T+++LI+V+ V EAA +++++ P +F +I Y A
Sbjct: 413 NCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQV 472
Query: 278 GKVEEIYQMMKAGPVMPD 295
V + + + PD
Sbjct: 473 DDVVRTFDQVLELGITPD 490
>gi|193848521|gb|ACF22711.1| PPR protein [Brachypodium distachyon]
Length = 292
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 2/167 (1%)
Query: 145 RRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYN 203
R G + Y I G+ N + A D F + ++ + T+N L+ A+
Sbjct: 17 REMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKG 76
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G D+ LF +++ E+N P TYN +I++ G +E E+K+ L PN+ T
Sbjct: 77 GRHDRAMELFEEMR-ESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNIIT 135
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
Y L+ Y + + + E ++MKA + P Y L+ YA G
Sbjct: 136 YTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRG 182
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 17/203 (8%)
Query: 116 RHSNGYAFVELMKQLGSRP-----RLALEVLNWRRRQAGYGTPMT--KEE--------YT 160
RH E M++ P + + +L + R G T ++ KE+ YT
Sbjct: 78 RHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNIITYT 137
Query: 161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLKKE 219
+ GR A + LK T Y+AL+ AY GL+D ++ + ++ +
Sbjct: 138 TLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRAD 197
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
+ S V N+L++ FG V + Q +K+++L P+V TY L+ + + K
Sbjct: 198 G-LEASTVVLNSLMNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTTLMKALIRIEQFDK 256
Query: 280 VEEIYQMMKAGPVMPDTNTYLLL 302
V IY+ M PD +L
Sbjct: 257 VPVIYEEMITSGCAPDRKARAML 279
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 113/296 (38%), Gaps = 38/296 (12%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K ++ R++ + + P YN +I FG+ + H AF +++ + P+V T+N L
Sbjct: 11 KAFAVLREMHA-SGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTL 69
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
I + + E+++ M+ P T TY +++ +E + +
Sbjct: 70 IDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETMLS------E 123
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME 387
KE L+ +I + V R + + + +C+E M+
Sbjct: 124 MKEQGLVPNIITYTTLVDVYGRSGRFKEAI-----------------------ECIEVMK 160
Query: 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVM 447
A K S T + +V++Y + D N VK + G + +S M
Sbjct: 161 -----ADGLKPSPT---MYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLMNA 212
Query: 448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ RRV E SVL+ M+ + T+ + A Q KV + M +G
Sbjct: 213 FGEDRRVVEAFSVLQFMKENDLRPDVITYTTLMKALIRIEQFDKVPVIYEEMITSG 268
>gi|255577248|ref|XP_002529506.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531022|gb|EEF32875.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 808
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/328 (23%), Positives = 141/328 (42%), Gaps = 24/328 (7%)
Query: 168 RINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
++ + A D+F K + I T+ +++ Y +G + C+++F + E ++P
Sbjct: 295 KLGQCEKAIDIFNSMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEG-LTP 353
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
+IV+YN LI + + + + F++IK S L P+V +Y L++ Y + K E++
Sbjct: 354 TIVSYNALIGAYAFHGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMF 413
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC 344
MMK + P+ ++ L+ Y +G L K+ ++ I ++ A +C
Sbjct: 414 NMMKKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGRC 473
Query: 345 SVTDRIKKI--EALMRLIP------EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396
I + A MR I ++NV Y K L + + A
Sbjct: 474 GQKVNIDAVLSAAKMRGIKLNTVACNSAIGSYMNV---GEYEKAVALYNSMRKMKVA--- 527
Query: 397 KTSVT-TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVE 455
SVT TV I C S + A++ A+ ++ + +C S+ + Y+ Q ++
Sbjct: 528 PNSVTYTVLISGCCKMSKYG-KAIEFFADMMELKIALTKEVCSSV----ICAYSKQGQIT 582
Query: 456 EMESVLKEMENYKIDCSKKTFWIMYYAY 483
E ES+ M+ TF M +AY
Sbjct: 583 EAESIFTMMKMAGCCPDIITFTAMLHAY 610
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 99/428 (23%), Positives = 174/428 (40%), Gaps = 21/428 (4%)
Query: 76 RVRKD--LTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSR 133
R ++D L+Q VS + EL DD++ V + F R + F L+K++ R
Sbjct: 70 RFQRDWTLSQVVSKIL-ELNPKYDDVEVVLNHWIGR----FARKN----FPRLIKEITQR 120
Query: 134 PRLALE--VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG 191
L V W + Q Y + Y I+ R N D A LF E K
Sbjct: 121 GALEHSNLVFRWMKLQKNYCA--RTDMYNMMIRLHARHNLTDQARGLFFEMQEWRCKPDS 178
Query: 192 -TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TYNAL+ A+ G ++ D+ +EA I PS TYN LI+ G +
Sbjct: 179 ETYNALINAHGRAGQWRWAMNIMEDMLREA-IPPSRSTYNNLINACGSSGNWREALKVSK 237
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
++ ++ + P++ T+N +++ Y T + K +++MK + PDT T +++ G
Sbjct: 238 QMTENGVGPDLVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPDTTTRNIVIYCLVKLG 297
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+ I+ ++ + P I S++ +++ +A+ + + P +
Sbjct: 298 QCEKAIDIFNSMREK-RAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEGLTPTIV 356
Query: 371 V--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
LI YA EE S+ + + V ++SSY R K
Sbjct: 357 SYNALIGAYAFHGMSEE-ALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMFNM 415
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+ A + +++ + Y S + + VL+EME I + T + A CGQ
Sbjct: 416 MKKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGRCGQ 475
Query: 489 RRKVNQVL 496
+ ++ VL
Sbjct: 476 KVNIDAVL 483
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 96/233 (41%), Gaps = 43/233 (18%)
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV------FGRLL--LVDHM 245
N+ +G+YM G +K +L+ ++K ++P+ VTY LIS +G+ + D M
Sbjct: 499 NSAIGSYMNVGEYEKAVALYNSMRK-MKVAPNSVTYTVLISGCCKMSKYGKAIEFFADMM 557
Query: 246 E---------------------------AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E + F +K + P++ T+ ++ Y WG
Sbjct: 558 ELKIALTKEVCSSVICAYSKQGQITEAESIFTMMKMAGCCPDIITFTAMLHAYNAGEHWG 617
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338
K ++ Q M+ + DT L+R + GN ++ + E +K KE P A+
Sbjct: 618 KACDLIQEMEDYDIQLDTIACSALMRAFNKRGNPSQVLILAEFMKE----KEIPFSDAIF 673
Query: 339 CA-YSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEK 388
S CS+ + I LM+L+ + +L L+ V + +E M K
Sbjct: 674 FEMVSACSLLRDWRTILNLMKLMEPSFSVVSIGLLNQLLHVLGRSGKIESMMK 726
>gi|30694913|ref|NP_191463.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525907|sp|Q9LYT2.2|PP287_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g59040
gi|332646344|gb|AEE79865.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 583
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 97/195 (49%), Gaps = 9/195 (4%)
Query: 168 RINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+ N + A +F+ K + ++ TYN+L M S K S D + ++I P +
Sbjct: 259 KAGNYEKARKVFSSMVGKGVPQSTVTYNSL----MSFETSYKEVSKIYDQMQRSDIQPDV 314
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
V+Y LI +GR + + F+E+ D+ + P YN L+ + + M + + +++
Sbjct: 315 VSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKS 374
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR--AMICAYSKC 344
M+ + PD +Y +L Y ++ ++ EK ++ +K VDG E ++ +I Y+K
Sbjct: 375 MRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIK--VDGFEPNIVTYGTLIKGYAKA 432
Query: 345 SVTDRIKKIEALMRL 359
+ +++ ++ MRL
Sbjct: 433 NDVEKMMEVYEKMRL 447
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/330 (20%), Positives = 139/330 (42%), Gaps = 46/330 (13%)
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ AY G + + + L K + +P++++Y L+ +GR ++ EA F+ ++ S
Sbjct: 145 LITAYGKLGNFNGAERVLSVLSKMGS-TPNVISYTALMESYGRGGKCNNAEAIFRRMQSS 203
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM---KAGPVMPDTNTYLLLLRGYAHSGNL 312
P+ TY ++ ++ + + EE+++ + K P+ PD Y +++ Y +GN
Sbjct: 204 GPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNY 263
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL--N 370
+ K++ + GK P ++ + S S K++ + + + +P +
Sbjct: 264 EKARKVF----SSMVGKGVP--QSTVTYNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSY 317
Query: 371 VLLIRVYAK----EDCLEEMEKSIN--------------DAF-------EHKTSVTTVRI 405
LLI+ Y + E+ L E+ ++ DAF + KT ++R
Sbjct: 318 ALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRR 377
Query: 406 MR---------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
R ++S+Y + ++ F KR + G+ Y + + YA VE+
Sbjct: 378 DRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEK 437
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATC 486
M V ++M I ++ + A C
Sbjct: 438 MMEVYEKMRLSGIKANQTILTTIMDASGRC 467
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/289 (19%), Positives = 114/289 (39%), Gaps = 18/289 (6%)
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
S + + LI+ +G+L + E + +PNV +Y L+ Y E I+
Sbjct: 138 SEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIF 197
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL------IRAMI 338
+ M++ P TY ++L+ + E+++E + +D K+ PL MI
Sbjct: 198 RRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETL---LDEKKSPLKPDQKMYHMMI 254
Query: 339 CAYSKCSVTDRIKKIEALM--RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396
Y K ++ +K+ + M + +P+ V + + E +E+ K I D +
Sbjct: 255 YMYKKAGNYEKARKVFSSMVGKGVPQS------TVTYNSLMSFETSYKEVSK-IYDQMQR 307
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
V ++ +Y R ++ + + AG R Y+ + +A VE+
Sbjct: 308 SDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQ 367
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
++V K M +I ++ M AY + + +G++
Sbjct: 368 AKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFE 416
>gi|388490914|gb|AFK33523.1| unknown [Lotus japonicus]
Length = 358
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 113/240 (47%), Gaps = 20/240 (8%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT 192
R + ALE+ W +G ++ +Y I ++ +D AA+ + EA KT T
Sbjct: 97 RYKHALEISEWMITHEEHG--LSDSDYAMRIDLMTKVFGID-AAERYFEALPVAAKTSET 153
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y ALL +Y +++K + L++ + K++N+S +TYN +++++ + V+ + + +E+
Sbjct: 154 YTALLHSYAGAKMTEKAEELYQRI-KDSNLSFDALTYNEMMTLYMSVGQVEKVPSVVEEL 212
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT-YLLLLRGY----- 306
K N+SP++FTYN I+ +V I M G ++ T YL L Y
Sbjct: 213 KQRNVSPDIFTYNLWISSCAATLNIDEVRRILDEMSHGADSNESWTRYLNLANVYVTASR 272
Query: 307 ---AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
+ S +L EK + ++ +I Y+ D++ +I +R+ +K
Sbjct: 273 LDNSSSNSLAETEK-------RITQSQWITYDFLIILYAGLGSKDKLDQIWNSLRMTKQK 325
>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
Length = 1088
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 120/308 (38%), Gaps = 19/308 (6%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT 192
R + A VLN R + +T E KG G L + + H + T
Sbjct: 575 RIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG--HSANLVT 632
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN ++ Y +G + + DL ++ P +Y LI F ++ ++ F E+
Sbjct: 633 YNTIIKGYCDSGNTTSALRIL-DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEM 691
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
D L PN TY LI GY + + MK P+ TY +L+ G N
Sbjct: 692 VDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNF 751
Query: 313 PRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
E EL K ++ FP + AMI K T +E ++I E+ P
Sbjct: 752 SGAE---ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSL--ALEMFNKMI-EQGCLP-- 803
Query: 370 NVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
N+L LIR +E +EE E + H + ++ ++ +Y V+ NF
Sbjct: 804 NLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVK-MIEAYIMSGKVEHAFNF 862
Query: 426 VKRAESAG 433
+ R AG
Sbjct: 863 LGRMIKAG 870
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 100/450 (22%), Positives = 165/450 (36%), Gaps = 58/450 (12%)
Query: 98 DLDKVFRVLDE--KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMT 155
DLD +V ++ K C N + L+ L R+ E + R +G T
Sbjct: 435 DLDSALQVFNQMAKEGC----EPNTVTYSTLINGLCDSGRVN-EAFDLIREMILHGILPT 489
Query: 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFR 214
T I + + A LF + NK + + TY AL+ +GL LF
Sbjct: 490 AHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFH 549
Query: 215 DLKKEANISPSIVTYNTLISV----------------------FGRLLLVDHMEAAFQEI 252
+ ++ + P+ VTYN LI++ F ++ + M + +
Sbjct: 550 RMSRDG-VFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCIL 608
Query: 253 KD--------SNL-----SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
D +N+ S N+ TYN +I GY + I +M+ G PD +Y
Sbjct: 609 GDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSY 668
Query: 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEAL 356
L+ G+ + +ME + L VD P A+I Y K +++ +L
Sbjct: 669 TELICGFC---KISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCK---DEKLDTATSL 722
Query: 357 MRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF 414
+ + RP + +LI K++ E+ E V I
Sbjct: 723 LEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCK 782
Query: 415 RCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR-RVEEMESVLKEMENYKIDCSK 473
+ L F K E L L +S ++ Q +VEE E++ E+E + + +
Sbjct: 783 NGSTSLALEMFNKMIEQGC--LPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDE 840
Query: 474 KTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
T+ M AY G+ LG M K G
Sbjct: 841 ITYVKMIEAYIMSGKVEHAFNFLGRMIKAG 870
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLF 213
+KE + + F ++ L LFA +A HL +G A++ Y + LS+ Q
Sbjct: 327 SKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRY-HRMLSEGVQ--- 382
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
P+++ YN +I+ + V E +++ +S +SP+ FTY +I G+
Sbjct: 383 ----------PNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCR 432
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
+++ M P+T TY L+ G SG R+ + ++L++ +
Sbjct: 433 KHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSG---RVNEAFDLIREMI 482
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 2/146 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I R +++D A +F + A + + TY+ L+ +G ++ L R++
Sbjct: 423 YTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI 482
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
I P+ T I + + F ++K+ PNV+TY LI+G + +
Sbjct: 483 LHG-ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLL 541
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLL 303
++ M V P+T TY L+
Sbjct: 542 KVAIGLFHRMSRDGVFPNTVTYNALI 567
>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
Query: 174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
L +D+ + N +L T +NAL+ A++ G + + L+ D+ K + I P I TYN+L+
Sbjct: 317 LLSDMIEKKINPNLVT---FNALIDAFVKEGKFVEAEKLYDDMIKRS-IDPDIFTYNSLV 372
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F +D + F+ + + P+V TYN LI G+ + E+++ M ++
Sbjct: 373 NGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLV 432
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYE 320
DT TY L++G H G+ +K+++
Sbjct: 433 GDTVTYTTLIQGLFHDGDCDNAQKVFK 459
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Query: 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
+VD A +LF E K ++ + TY++L+ G L D+ E I+P++VT+
Sbjct: 275 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI-EKKINPNLVTF 333
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
N LI F + E + ++ ++ P++FTYN L+ G+ K +++++ M +
Sbjct: 334 NALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS 393
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
PD TY L++G+ S + +++ + H
Sbjct: 394 KDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSH 428
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN+L+ + + DK + +F + + P +VTYNTLI F + V+ F
Sbjct: 365 IFTYNSLVNGFCMHDRLDKAKQMF-EFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELF 423
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E+ L + TY LI G +++++ M + V PD TY +LL G ++
Sbjct: 424 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 483
Query: 310 GNLPRMEKIYE 320
G L + ++++
Sbjct: 484 GKLEKALEVFD 494
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 101/259 (38%), Gaps = 25/259 (9%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C +R S+ A V+ M ++G RP +T G+ +
Sbjct: 164 GYCHGKRISDAVALVDQMVEMGYRP-----------------DTITFTTLIHGLFLHNKA 206
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
+ D + + + TY ++ G +D +L ++ A I +V +
Sbjct: 207 SEAVALVDRMVQRGCQ--PNLVTYGVVVNGLCKRGDTDLALNLLNKME-AAKIEADVVIF 263
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
NT+I + VD F+E++ + PNV TY+ LI+ + W ++ M
Sbjct: 264 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 323
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+ P+ T+ L+ + G EK+Y +++K +D P I + + D
Sbjct: 324 KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSID----PDIFTYNSLVNGFCMHD 379
Query: 349 RIKKIEALMRLIPEKEYRP 367
R+ K + + + K+ P
Sbjct: 380 RLDKAKQMFEFMVSKDCFP 398
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 22/204 (10%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR 168
KG C +R +G EL +++ R + G +T +G+ G
Sbjct: 408 KGFCKSKRVEDG---TELFREMSHRGLV--------------GDTVTYTTLIQGLFHDGD 450
Query: 169 INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+N A +F + + + I TY+ LL NG +K +F D +++ I I
Sbjct: 451 CDN---AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVF-DYMQKSEIKLDIY 506
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
Y T+I + VD F + + PNV TYN +I+G + + + + + M
Sbjct: 507 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 566
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGN 311
K +P++ TY L+R + G+
Sbjct: 567 KEDGPLPNSGTYNTLIRAHLRDGD 590
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ + + + LFR++ + + VTY TLI D+ + F++
Sbjct: 402 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT-VTYTTLIQGLFHDGDCDNAQKVFKQ 460
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + P++ TY+ L+ G K E++ M+ + D Y ++ G +G
Sbjct: 461 MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 520
Query: 312 L 312
+
Sbjct: 521 V 521
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 132/327 (40%), Gaps = 11/327 (3%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
G Y +L +++ D LF + K + PSIV +N L+S ++ D + + +
Sbjct: 51 GDYREILRNGLHDMKLDDAIGLFGGMVKSRPL-PSIVEFNKLLSAIAKMKKFDVVISLGE 109
Query: 251 EIKDSNLSPNVFTYNYLIAGYM-TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+++ + ++TYN LI + + + + + +MMK G P T LL GY H
Sbjct: 110 KMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLG-YEPSIVTLSSLLNGYCHG 168
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
R+ LV V+ P + ++ + AL+ + ++ +P L
Sbjct: 169 ---KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL 225
Query: 370 ---NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
V++ + + D ++ ++ + E V I I+ S + VD N
Sbjct: 226 VTYGVVVNGLCKRGD--TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 283
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
K E+ G R Y S + S R + +L +M KI+ + TF + A+
Sbjct: 284 KEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 343
Query: 487 GQRRKVNQVLGLMCKNGYDVPVNAFPS 513
G+ + ++ M K D + + S
Sbjct: 344 GKFVEAEKLYDDMIKRSIDPDIFTYNS 370
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 5/158 (3%)
Query: 160 TKGIKFAGRINNVDL--AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDL 216
T I G NN L A ++F +K I Y ++ G D LF L
Sbjct: 472 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 531
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
+ + P++VTYNT+IS L+ A +++K+ PN TYN LI ++
Sbjct: 532 SLKG-VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 590
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
E+ + M++ + D +T + L+ H G L +
Sbjct: 591 KAASAELIREMRSCRFVGDAST-IGLVANMLHDGRLDK 627
>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
Length = 596
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 4/147 (2%)
Query: 174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
L +D+ + N +L T +NAL+ A++ G + + L+ D+ K + I P I TYN+L+
Sbjct: 279 LLSDMIEKKINPNLVT---FNALIDAFVKEGKFVEAEKLYDDMIKRS-IDPDIFTYNSLV 334
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F +D + F+ + + P+V TYN LI G+ + E+++ M ++
Sbjct: 335 NGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLV 394
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYE 320
DT TY L++G H G+ +K+++
Sbjct: 395 GDTVTYTTLIQGLFHDGDCDNAQKVFK 421
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Query: 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
+VD A +LF E K ++ + TY++L+ G L D+ E I+P++VT+
Sbjct: 237 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI-EKKINPNLVTF 295
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
N LI F + E + ++ ++ P++FTYN L+ G+ K +++++ M +
Sbjct: 296 NALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVS 355
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
PD TY L++G+ S + +++ + H
Sbjct: 356 KDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSH 390
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN+L+ + + DK + +F + + P +VTYNTLI F + V+ F
Sbjct: 327 IFTYNSLVNGFCMHDRLDKAKQMF-EFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELF 385
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E+ L + TY LI G +++++ M + V PD TY +LL G ++
Sbjct: 386 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 445
Query: 310 GNLPRMEKIYE 320
G L + ++++
Sbjct: 446 GKLEKALEVFD 456
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 101/259 (38%), Gaps = 25/259 (9%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C +R S+ A V+ M ++G RP +T G+ +
Sbjct: 126 GYCHGKRISDAVALVDQMVEMGYRP-----------------DTITFTTLIHGLFLHNKA 168
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
+ D + + + TY ++ G +D +L ++ A I +V +
Sbjct: 169 SEAVALVDRMVQRGCQ--PNLVTYGVVVNGLCKRGDTDLALNLLNKMEA-AKIEADVVIF 225
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
NT+I + VD F+E++ + PNV TY+ LI+ + W ++ M
Sbjct: 226 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 285
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+ P+ T+ L+ + G EK+Y +++K +D P I + + D
Sbjct: 286 KKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSID----PDIFTYNSLVNGFCMHD 341
Query: 349 RIKKIEALMRLIPEKEYRP 367
R+ K + + + K+ P
Sbjct: 342 RLDKAKQMFEFMVSKDCFP 360
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 22/204 (10%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR 168
KG C +R +G EL +++ R + G +T +G+ G
Sbjct: 370 KGFCKSKRVEDG---TELFREMSHRGLV--------------GDTVTYTTLIQGLFHDGD 412
Query: 169 INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+N A +F + + + I TY+ LL NG +K +F D +++ I I
Sbjct: 413 CDN---AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVF-DYMQKSEIKLDIY 468
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
Y T+I + VD F + + PNV TYN +I+G + + + + + M
Sbjct: 469 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 528
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGN 311
K +P++ TY L+R + G+
Sbjct: 529 KEDGPLPNSGTYNTLIRAHLRDGD 552
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ + + + LFR++ + + VTY TLI D+ + F++
Sbjct: 364 TYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT-VTYTTLIQGLFHDGDCDNAQKVFKQ 422
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + P++ TY+ L+ G K E++ M+ + D Y ++ G +G
Sbjct: 423 MVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGK 482
Query: 312 L 312
+
Sbjct: 483 V 483
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 70/327 (21%), Positives = 132/327 (40%), Gaps = 11/327 (3%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
G Y +L +++ D LF + K + PSIV +N L+S ++ D + + +
Sbjct: 13 GDYREILRNGLHDMKLDDAIGLFGGMVKSRPL-PSIVEFNKLLSAIAKMKKFDVVISLGE 71
Query: 251 EIKDSNLSPNVFTYNYLIAGYM-TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+++ + ++TYN LI + + + + + +MMK G P T LL GY H
Sbjct: 72 KMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLG-YEPSIVTLSSLLNGYCHG 130
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
R+ LV V+ P + ++ + AL+ + ++ +P L
Sbjct: 131 ---KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNL 187
Query: 370 ---NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
V++ + + D ++ ++ + E V I I+ S + VD N
Sbjct: 188 VTYGVVVNGLCKRGD--TDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 245
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
K E+ G R Y S + S R + +L +M KI+ + TF + A+
Sbjct: 246 KEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 305
Query: 487 GQRRKVNQVLGLMCKNGYDVPVNAFPS 513
G+ + ++ M K D + + S
Sbjct: 306 GKFVEAEKLYDDMIKRSIDPDIFTYNS 332
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 5/158 (3%)
Query: 160 TKGIKFAGRINNVDL--AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDL 216
T I G NN L A ++F +K I Y ++ G D LF L
Sbjct: 434 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 493
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
+ + P++VTYNT+IS L+ A +++K+ PN TYN LI ++
Sbjct: 494 SLKG-VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGD 552
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
E+ + M++ + D +T + L+ H G L +
Sbjct: 553 KAASAELIREMRSCRFVGDAST-IGLVANMLHDGRLDK 589
>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Cucumis sativus]
Length = 822
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 93 LANVDDLDKVFRVLDE-KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYG 151
L NV LD ++ DE K S L SN + + +M+ R+ +V N
Sbjct: 568 LCNVGKLDDAIKLWDEFKASGLI---SNIHTYGIMMEGYCKANRIE-DVENLFNELLSKK 623
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQ 210
+ Y IK + NV A L +K L TY++L+ GL + +
Sbjct: 624 MELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAK 683
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
L +++KE + P++V Y LI + +L +D E+ + E+ N+ PN FTY +I G
Sbjct: 684 HLIDEMRKEGFV-PNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDG 742
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
Y K + MK ++PD TY +L G+ + ++ K+
Sbjct: 743 YCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKV 790
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYNAL+ + G + C L ++ K I P I TYN L+ + +D + E
Sbjct: 525 TYNALILGFCNEGKVEGCFRLREEMTKRG-IQPDIYTYNFLLRGLCNVGKLDDAIKLWDE 583
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
K S L N+ TY ++ GY A VE ++ + + + ++ Y ++++ + +GN
Sbjct: 584 FKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGN 643
Query: 312 LPRMEKIYELVK 323
+ ++ E +K
Sbjct: 644 VAAALQLLENMK 655
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 96/246 (39%), Gaps = 25/246 (10%)
Query: 65 LLSETLTYP---DARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGY 121
L+S TY + + + + V L +ELL+ +L+ + + K C +
Sbjct: 589 LISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAAL 648
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
+E MK G P A Y+ I I V+ A L E
Sbjct: 649 QLLENMKSKGILPNCA--------------------TYSSLIHGVCNIGLVEDAKHLIDE 688
Query: 182 AANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
+ + + Y AL+G Y G D +S + ++ NI P+ TY +I + +L
Sbjct: 689 MRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMI-SFNIHPNKFTYTVMIDGYCKLG 747
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
++ ++K+S + P+V TYN L G+ A ++ M + D TY
Sbjct: 748 NMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYT 807
Query: 301 LLLRGY 306
L+ G+
Sbjct: 808 TLVHGW 813
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 1/155 (0%)
Query: 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+ N + ++F + + ++ ++ A G + LF ++K ISP++V
Sbjct: 221 KANEFEKCCEVFRVMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEK-LGISPNVV 279
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TYN +I+ + +D+ +++ + PN+ TY LI G + + KV + M
Sbjct: 280 TYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEM 339
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
P+ + L+ GY GN+ KI +++
Sbjct: 340 IGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVM 374
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 4/178 (2%)
Query: 168 RINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+ +D A L+ E A+ + I TY ++ Y + ++LF +L + SI
Sbjct: 570 NVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSI 629
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
V YN +I + V + +K + PN TY+ LI G + + +
Sbjct: 630 V-YNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDE 688
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSK 343
M+ +P+ Y L+ GY G + E + E++ ++ +F MI Y K
Sbjct: 689 MRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTY-TVMIDGYCK 745
>gi|359496216|ref|XP_002268636.2| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial [Vitis vinifera]
Length = 383
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 76/148 (51%), Gaps = 1/148 (0%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
I G+ D A +F E ++ +++ ++NALLGA +++ DK + F +L + +
Sbjct: 101 ISLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKFDKVEGFFSELPSKLS 160
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
+ P +V+YN +I + +D E++ +L P++ T+N L+ G T+ + E
Sbjct: 161 VEPDLVSYNIVIKGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGE 220
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+I+ M+ ++PD +Y L G S
Sbjct: 221 KIWGRMEKKNILPDIRSYNAKLVGLVSS 248
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG- 290
LIS++G+ + DH F E+ D +V ++N L+ + + + KVE + + +
Sbjct: 100 LISLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVHSKKFDKVEGFFSELPSKL 159
Query: 291 PVMPDTNTYLLLLRGYAHSGNL 312
V PD +Y ++++G G++
Sbjct: 160 SVEPDLVSYNIVIKGLCDMGSM 181
>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g19440, chloroplastic-like [Cucumis sativus]
Length = 799
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 7/228 (3%)
Query: 93 LANVDDLDKVFRVLDE-KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYG 151
L NV LD ++ DE K S L SN + + +M+ R+ +V N
Sbjct: 545 LCNVGKLDDAIKLWDEFKASGLI---SNIHTYGIMMEGYCKANRIE-DVENLFNELLSKK 600
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQ 210
+ Y IK + NV A L +K L TY++L+ GL + +
Sbjct: 601 MELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAK 660
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
L +++KE + P++V Y LI + +L +D E+ + E+ N+ PN FTY +I G
Sbjct: 661 HLIDEMRKEGFV-PNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDG 719
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
Y K + MK ++PD TY +L G+ + ++ K+
Sbjct: 720 YCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKV 767
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYNAL+ + G + C L ++ K I P I TYN L+ + +D + E
Sbjct: 502 TYNALILGFCNEGKVEGCFRLREEMTKRG-IQPDIYTYNFLLRGLCNVGKLDDAIKLWDE 560
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
K S L N+ TY ++ GY A VE ++ + + + ++ Y ++++ + +GN
Sbjct: 561 FKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGN 620
Query: 312 LPRMEKIYELVK 323
+ ++ E +K
Sbjct: 621 VAAALQLLENMK 632
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 1/155 (0%)
Query: 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+ N + ++F + + ++ ++ A G + LF ++K ISP++V
Sbjct: 198 KANEFEKCCEVFRVMSEGACPDVFSFTNVINALCKGGKMENAIELFMKMEK-LGISPNVV 256
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TYN +I+ + +D+ +++ + PN+ TY LI G + + KV I M
Sbjct: 257 TYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEM 316
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
P+ + L+ GY GN+ KI +++
Sbjct: 317 IGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVM 351
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 96/246 (39%), Gaps = 25/246 (10%)
Query: 65 LLSETLTYP---DARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGY 121
L+S TY + + + + V L +ELL+ +L+ + + K C +
Sbjct: 566 LISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAAL 625
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
+E MK G P A Y+ I I V+ A L E
Sbjct: 626 QLLENMKSKGILPNCA--------------------TYSSLIHGVCNIGLVEDAKHLIDE 665
Query: 182 AANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
+ + + Y AL+G Y G D +S + ++ NI P+ TY +I + +L
Sbjct: 666 MRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMI-SFNIHPNKFTYTVMIDGYCKLG 724
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
++ ++K+S + P+V TYN L G+ A ++ M + D TY
Sbjct: 725 NMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYT 784
Query: 301 LLLRGY 306
L+ G+
Sbjct: 785 TLVHGW 790
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 4/178 (2%)
Query: 168 RINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+ +D A L+ E A+ + I TY ++ Y + ++LF +L + SI
Sbjct: 547 NVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSI 606
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
V YN +I + V + +K + PN TY+ LI G + + +
Sbjct: 607 V-YNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDE 665
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSK 343
M+ +P+ Y L+ GY G + E + E++ ++ +F MI Y K
Sbjct: 666 MRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTY-TVMIDGYCK 722
>gi|255660946|gb|ACU25642.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 484
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K I P +VTYNT+I + R+ ++ E F E
Sbjct: 152 TFNIMIWGFFLSGKVETANRFFEDMKSR-EIMPDVVTYNTMIXGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEMKGFGIKPNAITYSTLLPGLCNAQK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E+V+ ++ + + +I K D + +A++RL
Sbjct: 271 MSEARSILKEMVEKYITPTDNSIFLRLISGQCKAGDLDAAADVLKAMIRL 320
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+TI +Y+AL + G + F + E N P+ T+N +I F V+
Sbjct: 113 RTIKSYDALFKVILRRGRYMMAKRYFNKMLSEGN-EPTRHTFNIMIWGFFLSGKVETANR 171
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
F+++K + P+V TYN +I GY + E+ + MK + P TY L++GY
Sbjct: 172 FFEDMKSREIMPDVVTYNTMIXGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGY 230
>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
Length = 496
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 87/207 (42%), Gaps = 8/207 (3%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+I T+N L+ Y G F +K A PS VTYN LI+ F R + A
Sbjct: 177 SIITFNLLVDGYGKAGKMSNALPFFNQMKA-AGFQPSAVTYNMLIAGFCRARDMTRANRA 235
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
++K+ L P TY LI + GK EI M+ + D +TY +L+R
Sbjct: 236 LSDMKERGLEPTKVTYTILIDSFARENHMGKAFEILAGMEKAGLEVDAHTYGVLVRALCM 295
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR---LIPEKEY 365
GN+ K+++ + + MI Y + + + K+ MR LIP
Sbjct: 296 EGNMKDARKLFQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKGLIPNSAS 355
Query: 366 RPWLNVLLIRVYAKEDCLEEMEKSIND 392
L IRV K+D +E E ++D
Sbjct: 356 YG----LTIRVLCKDDKCQEAEALLDD 378
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY AL+ Y +G +K +LF ++++ + P++ TYN LI + R + + F E
Sbjct: 75 TYTALMHGYFTHGQREKGFALFEEMRR-GGVEPNLYTYNCLIGEWCRTGEFERARSLFDE 133
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + NV +YN LIAG ++ MM+ P T+ LL+ GY +G
Sbjct: 134 MPVRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGK 193
Query: 312 L 312
+
Sbjct: 194 M 194
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 52/263 (19%), Positives = 102/263 (38%), Gaps = 37/263 (14%)
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F E+ L+PN TY L+ GY T K +++ M+ G V P+ TY L+ +
Sbjct: 61 FDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCR 120
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+G R +++ E P +R ++ +V I L R + W
Sbjct: 121 TGEFERARSLFD---------EMP-VRGIV-----RNVVSYNTLIAGLCR-----HGKLW 160
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
L+ + E + S+ T ++ V Y + + F +
Sbjct: 161 DAAKLLDMMRTEGT--------------RPSIITFNLL---VDGYGKAGKMSNALPFFNQ 203
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
++AG++ Y+ + + R + L +M+ ++ +K T+ I+ ++A
Sbjct: 204 MKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILIDSFARENH 263
Query: 489 RRKVNQVLGLMCKNGYDVPVNAF 511
K ++L M K G +V + +
Sbjct: 264 MGKAFEILAGMEKAGLEVDAHTY 286
>gi|452823354|gb|EME30365.1| mitochondrial protein translocase, MPT family [Galdieria
sulphuraria]
Length = 683
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 12/184 (6%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
KE I P ++YN L+ RL + E F+E++ L P+ TYNYLI Y + +
Sbjct: 403 KENGIEPDTISYNILLDHAFRLRDWERGEKIFKELQTQGLKPDATTYNYLIRAYSNSNQY 462
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
KV ++ M +P+ + L+R + GN ++ L++ H + P I A
Sbjct: 463 AKVVATFKEMNKRNFIPNEQSCSSLVRVFHIQGNDAAALQVLNLMERHYSPRNDPSILAF 522
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAK-------EDCLEEMEK 388
+ AY R++ + R++ K R W + +L+ +A ED L+EM
Sbjct: 523 VRAYISMG---RLQDALGMKRMLSRKTGRLWKTIVTILMDAFASIGDLRVVEDLLDEMRG 579
Query: 389 SIND 392
ND
Sbjct: 580 FQND 583
>gi|297734042|emb|CBI15289.3| unnamed protein product [Vitis vinifera]
Length = 793
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 96/241 (39%), Gaps = 40/241 (16%)
Query: 119 NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADL 178
+ Y +++KQ+ P +AL W +RQ G+ YT + GR L
Sbjct: 354 DAYQANQVLKQIQDHP-VALGFFYWLKRQTGF--KHDGHTYTTMVGILGRARQFGAINKL 410
Query: 179 FAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
AE + + TYN L+ +Y ++ S+F D +EA P VTY TLI +
Sbjct: 411 LAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVF-DRMQEAGCQPDRVTYCTLIDIHA 469
Query: 238 RLLLVD--------------------------------HMEAA---FQEIKDSNLSPNVF 262
+ +D H+ +A F E+ D PN+
Sbjct: 470 KAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLV 529
Query: 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
TYN +IA A + E+Y+ M+ PD TY +++ H G+L E I+ +
Sbjct: 530 TYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEM 589
Query: 323 K 323
K
Sbjct: 590 K 590
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 9/148 (6%)
Query: 179 FAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ------SLFRDLKKEANISPSIVTYNTL 232
+ AA + L+ + N L+ AY N + + Q F LK++ TY T+
Sbjct: 338 WGPAAEEALRNL---NCLMDAYQANQVLKQIQDHPVALGFFYWLKRQTGFKHDGHTYTTM 394
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
+ + GR + E+ PNV TYN LI Y A + ++ M+
Sbjct: 395 VGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEAGC 454
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
PD TY L+ +A +G L +Y+
Sbjct: 455 QPDRVTYCTLIDIHAKAGFLDVALHMYQ 482
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 2/146 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I + N A +L+ + N + TY+ ++ + G ++ +++F ++K
Sbjct: 531 YNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMK 590
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ N P Y L+ ++G++ V+ +Q + ++ L PNV T N L++ ++
Sbjct: 591 RK-NWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRL 649
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLL 303
+ Q M + P TY LLL
Sbjct: 650 SDAYNLLQSMLRLGLQPSLQTYTLLL 675
>gi|147841962|emb|CAN63129.1| hypothetical protein VITISV_001456 [Vitis vinifera]
Length = 701
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 137/307 (44%), Gaps = 18/307 (5%)
Query: 95 NVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPM 154
N+D +K+F + E+G + + ++ + ++ S P A+E W + +G
Sbjct: 191 NLDXAEKLFDEMLERG---VKPDNITFSTIISCARVSSLPNKAVE---WFEKMPEFGCHP 244
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLF 213
Y+ I GR NVD+A L+ A + + T++ L+ Y +G D C +++
Sbjct: 245 DDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVY 304
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
++K + P++V YNTL+ GR + ++E+ ++ L + TY L+ Y
Sbjct: 305 EEMKA-LGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRAYGR 363
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP- 332
A +Y+ MK + Y LL A G I+E +K G P
Sbjct: 364 ARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKS--SGNCMPD 421
Query: 333 --LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEK 388
++I YS CS ++ + EA++ + E + P + VL LI+ Y K + +E+ +
Sbjct: 422 SWTFSSLITIYS-CS--GKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVR 478
Query: 389 SINDAFE 395
+ + E
Sbjct: 479 TFDRLLE 485
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 16/187 (8%)
Query: 125 ELMKQLGSRPRLAL---------------EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
E MK LG +P L + + N + G ++ Y ++ GR
Sbjct: 305 EEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRAYGRA 364
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ A ++ E K L+ ++ YN LL G +++ ++F D+K N P T
Sbjct: 365 RYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWT 424
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
+++LI+++ V EA + ++ PN+F LI Y A +V + +
Sbjct: 425 FSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQCYGKANRTDEVVRTFDRLL 484
Query: 289 AGPVMPD 295
+ PD
Sbjct: 485 ELDITPD 491
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 127/304 (41%), Gaps = 23/304 (7%)
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
F +K S ++ YN + VF + +D E F E+ + + P+ T++ +I+
Sbjct: 163 FGFFRKRLKPSREVILYNVTLKVFRKCRNLDXAEKLFDEMLERGVKPDNITFSTIISCAR 222
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV---KHHVDGK 329
+ + K E ++ M PD TY ++ Y +GN+ K+Y+ K +D
Sbjct: 223 VSSLPNKAVEWFEKMPEFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPV 282
Query: 330 EFP-LIR--AMICAYSKC-SVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCL 383
F LIR M + C +V + +K + L+ Y L+ + R + ++
Sbjct: 283 TFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVI---YNTLLDAMGRAKRPWQAKNIY 339
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
+EM N+ + T ++R +Y R + K + G L LY++
Sbjct: 340 KEM---TNNGLQLSWG-TYAALLR----AYGRARYAEDALIVYKEMKEKGLELSVVLYNT 391
Query: 444 KMVMYASQRRVEEMESVLKEMENYKIDCSKK--TFWIMYYAYATCGQRRKVNQVLGLMCK 501
+ M A EE ++ ++M++ +C TF + Y+ G+ + +L M +
Sbjct: 392 LLAMCADVGYTEEAAAIFEDMKSSG-NCMPDSWTFSSLITIYSCSGKVSEAEAMLNAMLE 450
Query: 502 NGYD 505
G++
Sbjct: 451 AGFE 454
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 93/238 (39%), Gaps = 4/238 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEA-NISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TY+A++ AY G D L+ + E I P VT++TLI ++G D ++
Sbjct: 248 TYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDP--VTFSTLIRIYGMSGNFDGCLNVYE 305
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+K + PN+ YN L+ A + + IY+ M + TY LLR Y +
Sbjct: 306 EMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRAYGRAR 365
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+Y+ +K L ++ + T+ I M+ W
Sbjct: 366 YAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTF 425
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
LI +Y+ + E E +N E + ++ ++ Y + N D++ R
Sbjct: 426 SSLITIYSCSGKVSEAEAMLNAMLEAGFE-PNIFVLTSLIQCYGKANRTDEVVRTFDR 482
Score = 41.6 bits (96), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 2/163 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLK 217
Y +K + N+D A LF E + +K T++ ++ + L +K F +
Sbjct: 179 YNVTLKVFRKCRNLDXAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMP 238
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E P VTY+ +I +GR VD + + + T++ LI Y + +
Sbjct: 239 -EFGCHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNF 297
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+Y+ MKA V P+ Y LL + + + IY+
Sbjct: 298 DGCLNVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYK 340
>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
Length = 378
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 85/173 (49%), Gaps = 2/173 (1%)
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQ 210
P T Y I +I+ +D A LF EA +K ++ + Y++L+ + G D+
Sbjct: 125 VPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAY 184
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+ ++ K+ ++P++ T+N+L+ + ++ FQ +K+ SPN +TY+ LI G
Sbjct: 185 LILEEMMKKG-LAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILING 243
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+ K +Q M+ ++P+ TY ++ G A GN+ ++E K
Sbjct: 244 LCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFK 296
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I G++ +D A + E K L + T+N+L+ A + ++ F+ +K
Sbjct: 167 YSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMK 226
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E SP+ TY+ LI+ R+ + +QE++ L PNV TY +I+G
Sbjct: 227 -EMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNI 285
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+++ KA +PD ++ L+ G +H+ ++E
Sbjct: 286 TDACSLFERFKANGGIPDAASFNALIEGMSHANRAIEAYHVFE 328
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YNA++ + +G DK ++K + ++ P++ TY ++I ++ +D F+E
Sbjct: 96 AYNAVVDGFCKSGKVDKAYEALEEMKVK-HVPPTVATYGSIIDGLAKIDRLDEAYMLFEE 154
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY----QMMKAGPVMPDTNTYLLLL 303
K + NV Y+ LI G+ G+++E Y +MMK G + P+ T+ L+
Sbjct: 155 AKSKGIELNVIVYSSLIDGFGKV---GRIDEAYLILEEMMKKG-LAPNVYTWNSLM 206
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 14/175 (8%)
Query: 203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF 262
+G + +F+++ + P + NT + + V+ A F++IK P+V
Sbjct: 2 HGRKEDGHKIFKEMNRRG-CQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVR 60
Query: 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
+Y+ LI G A + I+ MK D Y ++ G+ SG +++K YE +
Sbjct: 61 SYSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSG---KVDKAYEAL 117
Query: 323 KHHVDGKEFPLIRAMICAYSKCSVTDRIKKI----EALMRLIPEKEYRPWLNVLL 373
+ + K P + Y S+ D + KI EA M K LNV++
Sbjct: 118 E-EMKVKHVP---PTVATYG--SIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIV 166
>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
Length = 593
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 121/292 (41%), Gaps = 18/292 (6%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K P+I TY L++ F R L + E F+E++ + P+V+ YN L+ Y A +
Sbjct: 297 KTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLP 356
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
EI+ +M+ PD +Y +L+ Y +G E ++ +K P +++
Sbjct: 357 QGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQ---GMRPTMKSH 413
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRP---WLNVLLIRVYAKEDCLEEMEKSINDAF 394
+ S + + + + E +M + + RP LN +L Y + L++ME+ + A
Sbjct: 414 MLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAML-NAYGRAGRLDDMERLLG-AM 471
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL-------YHSKMVM 447
E S+Y V A ++ R E+A L + S++
Sbjct: 472 ERGGDDDAGGGAAPDTSTYNVLVNVYGRAGYLDRMEAAFRALAARGLAADVVTWTSRIGA 531
Query: 448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
YA ++ + +EM + T ++ A C R+V QV ++
Sbjct: 532 YARKKEYGRCLEIFEEMVDAGCYPDAGTAKVL---LAACSDERQVEQVTAIV 580
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/308 (20%), Positives = 122/308 (39%), Gaps = 38/308 (12%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L+ AY +K +S++ L EA+ P+ TY L+ + + E E+
Sbjct: 168 YNLLIDAYGQKRQLNKAESIYMALL-EAHCVPTEDTYALLLRAYCNSGQLHRAEGVISEM 226
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL----------- 301
+ + L P YN + G + A K E+YQ MK +T TY L
Sbjct: 227 QKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKAKQP 286
Query: 302 ------------------------LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
L+ +A G + E+++E ++ + A+
Sbjct: 287 MSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNAL 346
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397
+ AYS+ + +I +LM + + R N+ L+ Y + +E E + + + +
Sbjct: 347 MEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNI-LVDAYGRAGLHQEAEAAFQE-LKQQ 404
Query: 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
T++ ++S++ + V + + + +G R ++ + Y R+++M
Sbjct: 405 GMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDM 464
Query: 458 ESVLKEME 465
E +L ME
Sbjct: 465 ERLLGAME 472
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 113/288 (39%), Gaps = 45/288 (15%)
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
S+ P++ YN LI Y K E IY + +P +TY LLLR Y +SG L R
Sbjct: 159 SSFRPDIICYNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQLHR 218
Query: 315 MEK-IYELVKH-----------HVDGKEFPLIRAMICAYSKCSVTDRIKK--------IE 354
E I E+ K+ ++DG L++A C+ V R+KK
Sbjct: 219 AEGVISEMQKNGLPPTATVYNAYLDG----LLKAR-CSEKAVEVYQRMKKERCRTNTETY 273
Query: 355 ALMRLIPEKEYRPWLNV-------------------LLIRVYAKEDCLEEMEKSINDAFE 395
LM + K +P ++ L+ +A+E E+ E+ + + +
Sbjct: 274 TLMINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEE-VFEEMQ 332
Query: 396 HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVE 455
V ++ +Y R + E G R+ Y+ + Y +
Sbjct: 333 QAGHEPDVYAYNALMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQ 392
Query: 456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
E E+ +E++ + + K+ ++ A+A G + +V+ + K+G
Sbjct: 393 EAEAAFQELKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSG 440
>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
Length = 696
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 104/269 (38%), Gaps = 39/269 (14%)
Query: 118 SNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAAD 177
+ F L++ L + R + + RR G YT +K + AA+
Sbjct: 177 AQAVTFTPLLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAE 236
Query: 178 LF---AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234
L AE + + +Y ++ + G K +LF + + I P++VT N++I
Sbjct: 237 LIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKML-DHGIPPNVVTCNSVID 295
Query: 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW----------------- 277
++ +D EA Q++ D ++ PN TYN LI GY+++ W
Sbjct: 296 GLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRP 355
Query: 278 ------------------GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ EI+ M P+ +TY LL GYA GNL M +
Sbjct: 356 NVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVK 415
Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+L+ + + I AY KC D
Sbjct: 416 DLMVQNGMRPGRHVFNIEIYAYCKCGRLD 444
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 3/182 (1%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N + AY G D+ F ++++ P IV Y T+I ++ +D + F ++
Sbjct: 430 FNIEIYAYCKCGRLDEASLTFNKMQQQG-FMPDIVAYTTVIDGLCKIGRLDDAMSRFCQM 488
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI-YQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
D LSP++ T+N LI G+ W K EE+ Y+MM G + P+ NT+ ++ G
Sbjct: 489 IDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMMDRG-IPPNVNTFNSMIDKLFKEGK 547
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ K+++L+ MI Y + K+ M LI K N
Sbjct: 548 VTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNT 607
Query: 372 LL 373
LL
Sbjct: 608 LL 609
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 87/199 (43%), Gaps = 7/199 (3%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I +I +D A F + + L I T+N L+ + +G +K + LF ++
Sbjct: 465 YTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEELFYEMM 524
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ I P++ T+N++I + V F + + PNV +YN +I GY A
Sbjct: 525 -DRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEV 583
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV-DGK---EFPL 333
G+V ++ M + P T+ LL G G P + L+ DG+ L
Sbjct: 584 GEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGLKPDVVTCKTLIDSCCEDGRIEDILTL 643
Query: 334 IRAMICAYSKC-SVTDRIK 351
R M+ K ++T+ IK
Sbjct: 644 FREMLGKADKTDTITENIK 662
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/269 (18%), Positives = 102/269 (37%), Gaps = 14/269 (5%)
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM--KAGPVMPDTNTYL 300
D M + + + +P+VF+Y L+ G + E+ MM P+ +Y
Sbjct: 197 DAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYT 256
Query: 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI 360
++ G+ G++ + ++ + H ++I K D K EA+++ +
Sbjct: 257 TVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMD---KAEAVLQQM 313
Query: 361 PEKEYRPWLNVL--LIRVYAKEDCLEE---MEKSINDAFEHKTSVTTVRIMRCIVSSYFR 415
++ P LI Y E + K ++ + VT ++ C+ S
Sbjct: 314 IDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLH 373
Query: 416 CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKT 475
A + + ++ + SL H YA++ + +M +V M + +
Sbjct: 374 AEAREIFNSMIQSGQKPNASTYGSLLHG----YATEGNLVDMNNVKDLMVQNGMRPGRHV 429
Query: 476 FWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
F I YAY CG+ + + M + G+
Sbjct: 430 FNIEIYAYCKCGRLDEASLTFNKMQQQGF 458
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 8/220 (3%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
+D A +L E K L+ + YN+++ G ++ L ++++ A I P +TY
Sbjct: 484 LDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEV-AGIDPDAITYT 542
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
T+I + RL +D QE+ D L P V T+N L+ G+ M + + M
Sbjct: 543 TVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEK 602
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI 350
++PD TY L++ + ++ KIY+ +++ + +I + K +
Sbjct: 603 GIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKAR---NL 659
Query: 351 KKIEALMRLIPEKEYRPWL---NVLLIRVYAKEDCLEEME 387
K+ L + + EK Y P + N L+ R Y K+ LE E
Sbjct: 660 KEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARE 699
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I+ G+ V +LF E ++ LK TY L+ Y G SL ++
Sbjct: 401 YTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMV 460
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ ++P+IVTY LI + +D E++ L NV YN ++ G A
Sbjct: 461 -QMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKA--- 516
Query: 278 GKVEEIYQMMK---AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
G +E+ ++MK + PD TY ++ Y G++ + K+ +
Sbjct: 517 GNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQ 562
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 122/312 (39%), Gaps = 38/312 (12%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+++ G S + + + R++ + I P V Y TLI F +L V F E
Sbjct: 330 TYNSIILLLCKIGKSFEAEKVLREMMSQ-KIIPDNVVYTTLIHGFFKLGHVRTANKWFDE 388
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +SP+ TY LI G+ + + ++ M + + PD TY L+ Y +G
Sbjct: 389 MLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAG- 447
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
E+V F L M+ + +T I AL+ + + N
Sbjct: 448 --------EMV------NAFSLHNEMV----QMGMTPNIVTYGALIDGLCKHGELDTANE 489
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
L L+EM K K V I +V+ + +++ +K E
Sbjct: 490 L----------LDEMRK--------KGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEV 531
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
AG Y + + Y +++ +L+EM + + + TF ++ + G
Sbjct: 532 AGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLED 591
Query: 492 VNQVLGLMCKNG 503
+++LG M + G
Sbjct: 592 GDRLLGWMLEKG 603
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 67/355 (18%), Positives = 139/355 (39%), Gaps = 17/355 (4%)
Query: 165 FAGRINN----VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
F RI N +++A +F E T +YN ++ + G + L + +
Sbjct: 231 FLSRIANNSEGIEMAIKVFCEYGISWNTT--SYNIIIYSLCRLGKVKEAHRLLMQMDFRS 288
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
+ +P +V+Y+T+I + L + +++ L PN +TYN +I +
Sbjct: 289 S-TPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEA 347
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340
E++ + M + ++PD Y L+ G+ G++ K ++ + ++ +I
Sbjct: 348 EKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQG 407
Query: 341 YSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEK--SINDAFEH 396
+ + ++ + + L + + +P LI VY K EM S+++
Sbjct: 408 FGQGG---KVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAG---EMVNAFSLHNEMVQ 461
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
+ ++ + +D + G +L +Y+S + +E+
Sbjct: 462 MGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQ 521
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
++KEME ID T+ + AY G K +++L M G V F
Sbjct: 522 AIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTF 576
>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
Length = 773
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 121/260 (46%), Gaps = 10/260 (3%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
AL + + +RQ + P T+ YT I GR ++ +++F + +K + + A
Sbjct: 65 ALRLFKYMQRQQ-WCKP-TEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTA 122
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV-DHMEAAFQEIKD 254
L+ AY NG + L +KKE + P+++TYNT+++ + L + + F +++
Sbjct: 123 LINAYGRNGQYEASLHLLARMKKE-QVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRH 181
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ P++ TYN L++ + + + +++ M V+ D TY L+ +A S L R
Sbjct: 182 EGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQLGR 241
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--L 372
+E++ ++ + + ++I AY+ + + + + P +
Sbjct: 242 VEELLREMEDEGNPPDIAGYNSLIEAYADAG---NVHGAAGVFKQMQRGGCAPDVETYST 298
Query: 373 LIRVYAKEDCLEEMEKSIND 392
L+R+Y + C E++ +D
Sbjct: 299 LLRIYGNQGCFEQVRSLFSD 318
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 9/163 (5%)
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G+ + G +N LFA+ ++ ++ + TYN LL A GL ++ +F+ + E+
Sbjct: 166 GLDWEGLLN-------LFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMN-ES 217
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
+ VTY +L+ F + +E +E++D P++ YN LI Y A
Sbjct: 218 GVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGA 277
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+++ M+ G PD TY LLR Y + G ++ ++ +K
Sbjct: 278 AGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMK 320
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 7/160 (4%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I YN+L+ AY G +F+ +++ +P + TY+TL+ ++G + + + F
Sbjct: 258 IAGYNSLIEAYADAGNVHGAAGVFKQMQR-GGCAPDVETYSTLLRIYGNQGCFEQVRSLF 316
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
++KD + P V TYN LI + + + ++ M V PD TY LL
Sbjct: 317 SDMKDLSTPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRG 376
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRA---MICAYSKCSV 346
G KI++ H + + P + A +I +Y K ++
Sbjct: 377 GLTREAAKIHQ---HMLTNESTPSLEASAGLISSYGKMAM 413
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY +L+ + + + + L R+++ E N P I YN+LI + V F++
Sbjct: 225 TYKSLVDTFAGSNQLGRVEELLREMEDEGN-PPDIAGYNSLIEAYADAGNVHGAAGVFKQ 283
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
++ +P+V TY+ L+ Y + +V ++ MK P TY L++ + G
Sbjct: 284 MQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGG 342
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQ 210
TP T Y I+ G + +LF + + +K TY+ALL GL+ +
Sbjct: 324 TPPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAA 383
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+ + + + +PS+ LIS +G++ + ++ I+++ L P V Y+ LI G
Sbjct: 384 KIHQHMLTNES-TPSLEASAGLISSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQG 442
Query: 271 YMTAWMWGKV-EEIYQMMKAGPVMP 294
Y ++ + +Y M KAG P
Sbjct: 443 YAKGGLYVEAGSTLYAMNKAGFQAP 467
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 47/263 (17%), Positives = 111/263 (42%), Gaps = 17/263 (6%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
LF+ ++++ P+ Y +I + GR L++ F+++ ++++ NV+ + LI Y
Sbjct: 68 LFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAY 127
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKE 330
+ + MK V P+ TY +L + G + + ++ ++H +G +
Sbjct: 128 GRNGQYEASLHLLARMKKEQVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRH--EGIQ 185
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK-------EYRPWLNVLLIRVYAKEDCL 383
LI S CS +++ + + + E Y+ L+ +A + L
Sbjct: 186 PDLI-TYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKS-----LVDTFAGSNQL 239
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
+E+ + + E + + + ++ +Y V A K+ + G Y +
Sbjct: 240 GRVEELLRE-MEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYST 298
Query: 444 KMVMYASQRRVEEMESVLKEMEN 466
+ +Y +Q E++ S+ +M++
Sbjct: 299 LLRIYGNQGCFEQVRSLFSDMKD 321
>gi|168024876|ref|XP_001764961.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683770|gb|EDQ70177.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 743
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 129/295 (43%), Gaps = 41/295 (13%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
D +S+F++++ A ++PS+ + T+I V+G V E F ++ S ++F YN
Sbjct: 378 DGAKSVFKEMQV-AGVTPSLESSCTMIYVYGMNGDVKEAEGLFHSLRSSVKRLDIFAYNV 436
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR------------ 314
+I YM M ++Y++M+ ++PD TY +LR NLP
Sbjct: 437 MINVYMRCDMPEGAIKVYKLMEEDHLLPDAYTYHSMLR-MCQKCNLPAQAEEIYWRLRNS 495
Query: 315 ---------------------MEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRI 350
+E++++L + +D P MI Y K + +R
Sbjct: 496 DVELDEVMCNCVLNTCAKFLPLEEMHKLFQEMIDVGYVPYNITFNVMIDLYGKAGMPERA 555
Query: 351 KKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV 410
K L + + + L+ YAK+ ME ++ + ++ +++ I+
Sbjct: 556 HKALKLAQQFGSADKISFST--LVHAYAKKQDFPNMEAALWE-MQNAGYGSSLEAYNSIL 612
Query: 411 SSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+Y + ++K+++ + R E++G R+ + Y+ + Y + EME++ + M+
Sbjct: 613 DAYGKAGQMEKVSDVLARMENSGMRMDLASYNILINTYGKNYMIAEMETLFRTMQ 667
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/338 (20%), Positives = 147/338 (43%), Gaps = 31/338 (9%)
Query: 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
R V A +F+ N ++ + Y+ ++ Y GL +K + + ++++ N++P
Sbjct: 94 RHRKVAEAESVFSHMLNSGVQAVVAYSVMIALYNREGLFEKSEQIVTEMRRN-NVTPDRD 152
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
+ ++ +G+ ++ E +++S +S + YN +I Y A ++ K + + M
Sbjct: 153 NWLKQLNTYGQQGKIEEAERIMDTVEESGMSLGLVGYNSMITAYGKACLYDKAARLVEKM 212
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347
+ ++PD+ TY ++ G R+ K+ E + + K + A + S+
Sbjct: 213 REEDLVPDSITYSCMI------GACGRVGKLKEALSWFAEMKRLEIKPASSNFNTLISLY 266
Query: 348 DRIKKIEALMRLIPE-KEY--RPWLNVL--LIRVYAKEDCLEEMEKSIN---DA--FEHK 397
+ K +E ++R+I E K+Y +P L +R Y + ++++ + +N DA E
Sbjct: 267 GKAKDVEGIVRVITEMKKYGCKPDWQTLDAAVRAYDRAGLIKDVTEILNLLRDAGWVEET 326
Query: 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR----LCRSLYHSKMVMYASQRR 453
S T ++ Y +CN + AG +CRSL + +
Sbjct: 327 GSYGT------LLHVYLKCNLPKEALRIFLAMRKAGMAPKEYMCRSL----ICTFRDAEM 376
Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
+ +SV KEM+ + S ++ M Y Y G ++
Sbjct: 377 FDGAKSVFKEMQVAGVTPSLESSCTMIYVYGMNGDVKE 414
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 75/146 (51%), Gaps = 7/146 (4%)
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNAL 196
+E W + AGYG+ + E Y + G+ ++ +D+ A N ++ + +YN L
Sbjct: 589 MEAALWEMQNAGYGSSL--EAYNSILDAYGKAGQMEKVSDVLARMENSGMRMDLASYNIL 646
Query: 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256
+ Y N + + ++LFR +++E + P TYNT+I +G D F+ ++D+
Sbjct: 647 INTYGKNYMIAEMETLFRTMQEEG-VVPDRWTYNTIIRTYGFADYPDRAVYWFKAMQDAG 705
Query: 257 LSPNVFTYNYLIAGYMTAWMWGKVEE 282
+SP+ TY L++ + A G ++E
Sbjct: 706 ISPDRVTYMILVSTFERA---GNIDE 728
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/315 (21%), Positives = 129/315 (40%), Gaps = 43/315 (13%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N L+ + D F+ L + + PSI+TY+ ++ ++ R V E+ F
Sbjct: 49 TFNTLIMSASKANYVDYATITFQ-LMLQTGVLPSILTYSMMLLLYQRHRKVAEAESVFSH 107
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +S + V Y+ +IA Y ++ K E+I M+ V PD + +L L Y G
Sbjct: 108 MLNSGVQA-VVAYSVMIALYNREGLFEKSEQIVTEMRRNNVTPDRDNWLKQLNTYGQQGK 166
Query: 312 LPRMEKIYELVKHHVDGKEFPLI--RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
+ E+I + V+ G L+ +MI AY K + D+ ++ MR
Sbjct: 167 IEEAERIMDTVEE--SGMSLGLVGYNSMITAYGKACLYDKAARLVEKMR----------- 213
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
+ED + + S+T C++ + R + + ++
Sbjct: 214 ---------EEDLVPD-------------SIT----YSCMIGACGRVGKLKEALSWFAEM 247
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
+ + S +++ + +Y + VE + V+ EM+ Y +T AY G
Sbjct: 248 KRLEIKPASSNFNTLISLYGKAKDVEGIVRVITEMKKYGCKPDWQTLDAAVRAYDRAGLI 307
Query: 490 RKVNQVLGLMCKNGY 504
+ V ++L L+ G+
Sbjct: 308 KDVTEILNLLRDAGW 322
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 76/148 (51%), Gaps = 1/148 (0%)
Query: 165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
+A + + ++ A L+ + ++ YN++L AY G +K + ++ + +
Sbjct: 580 YAKKQDFPNMEAALWEMQNAGYGSSLEAYNSILDAYGKAGQMEKVSDVLARMEN-SGMRM 638
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
+ +YN LI+ +G+ ++ ME F+ +++ + P+ +TYN +I Y A + +
Sbjct: 639 DLASYNILINTYGKNYMIAEMETLFRTMQEEGVVPDRWTYNTIIRTYGFADYPDRAVYWF 698
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ M+ + PD TY++L+ + +GN+
Sbjct: 699 KAMQDAGISPDRVTYMILVSTFERAGNI 726
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/134 (18%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ Y G+ ++ + ++ S ++++TL+ + + +MEAA E
Sbjct: 538 TFNVMIDLYGKAGMPERAHKALKLAQQFG--SADKISFSTLVHAYAKKQDFPNMEAALWE 595
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++++ ++ YN ++ Y A KV ++ M+ + D +Y +L+ Y +
Sbjct: 596 MQNAGYGSSLEAYNSILDAYGKAGQMEKVSDVLARMENSGMRMDLASYNILINTYGKNYM 655
Query: 312 LPRMEKIYELVKHH 325
+ ME ++ ++
Sbjct: 656 IAEMETLFRTMQEE 669
>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
Length = 414
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 125/294 (42%), Gaps = 26/294 (8%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI-KDSNLSPNVFTYNYLIAGYMTAWM 276
E SP VT+N L+ R V + + +D PNV T+ +I+GY A
Sbjct: 109 NEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKA-- 166
Query: 277 WGKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
GK+E+ +Y M A +MP+T TY +L+ GY G+L ++Y+ + +
Sbjct: 167 -GKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVT 225
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV----LLIRVYAKEDCLEEMEKS 389
++I Y +C D +I + M ++R NV ++I K++ +E
Sbjct: 226 FSSLIDGYCRCGQLDDALRIWSDM-----AQHRIQPNVYTFSIIIHSLCKQNRSDEAIGL 280
Query: 390 INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA-ESAGWRLCRSLYHSKMVMY 448
+N+ I ++ +C VD+ AN +++ E G R + Y ++ Y
Sbjct: 281 LNELNLRPDIAPQAFIYNPVIDVLCKCGKVDE-ANLIRKGMEEKGCRPDKYTYTILIIGY 339
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC----GQRRKVNQVLGL 498
+ R+ E EM + CS + I + +C G +V+ V+ L
Sbjct: 340 CMKSRISEAIMFFHEM--VEAGCSPDS--ITVNCFISCLLKAGMPNEVDHVMRL 389
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N L+ + + R L+++ P++VT+ ++IS + + ++ A + +
Sbjct: 119 THNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYND 178
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ S + PN TYN LI GY G E+YQ M PD T+ L+ GY G
Sbjct: 179 MVASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQ 238
Query: 312 LPRMEKIYELVKHH 325
L +I+ + H
Sbjct: 239 LDDALRIWSDMAQH 252
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R +D A ++++ A ++ + T++ ++ + SD+ L +L +I+P
Sbjct: 235 RCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQA 294
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY-MTAWMWGKVEEIYQ 285
YN +I V + VD + +++ P+ +TY LI GY M + + + ++
Sbjct: 295 FIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHE 354
Query: 286 MMKAGPVMPDTNT 298
M++AG PD+ T
Sbjct: 355 MVEAG-CSPDSIT 366
>gi|357144696|ref|XP_003573383.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Brachypodium distachyon]
Length = 606
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 94/186 (50%), Gaps = 5/186 (2%)
Query: 175 AADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A LFA+ + + + ++ T+N+L+ + G + S++ +++ A + P +V+Y+ LI
Sbjct: 268 ARKLFAQMSERGIPQSTVTFNSLMS---FEGDYKEVSSIYDQMQR-AGLKPDVVSYSLLI 323
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+G+ + A F+E+ D+ + P +YN L+ + + + + + +++ M+ V
Sbjct: 324 KAYGKARREEEASAVFEEMLDAGIRPTRKSYNILLDAFAISGLVEEAQTVFKTMRRHRVE 383
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
PD +Y +L Y ++ ++ EK + +K + ++ YSK +++ ++
Sbjct: 384 PDLCSYTTMLLAYVNASDMDGAEKFFRRIKEDGLRPNVVVYGTLMKGYSKLDNVEKVMRV 443
Query: 354 EALMRL 359
MR+
Sbjct: 444 YERMRM 449
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 75/146 (51%), Gaps = 2/146 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ IK G+ + A+ +F E + ++ T +YN LL A+ +GL ++ Q++F+ ++
Sbjct: 319 YSLLIKAYGKARREEEASAVFEEMLDAGIRPTRKSYNILLDAFAISGLVEEAQTVFKTMR 378
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + P + +Y T++ + +D E F+ IK+ L PNV Y L+ GY
Sbjct: 379 RH-RVEPDLCSYTTMLLAYVNASDMDGAEKFFRRIKEDGLRPNVVVYGTLMKGYSKLDNV 437
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLL 303
KV +Y+ M+ V P+ + ++
Sbjct: 438 EKVMRVYERMRMQGVEPNQTIFTTIM 463
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 100/257 (38%), Gaps = 15/257 (5%)
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L++ +G+L E + + P V + L+ Y A + K E ++ M+
Sbjct: 147 LVTAYGKLGDFSRAERVLKYMNKKGYRPTVISQTALMEAYGRAKQYRKAEAVFHRMQTSG 206
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELV---KHHVDGKEFPLIRAMICAYSKCSVTD 348
P TY ++L+ E I+E + K + + MI Y K
Sbjct: 207 PEPSPITYQIILKSLVEGDKYKEAEAIFEDLLSEKRTFFKPDQKMFHMMIYMYKKSGDYA 266
Query: 349 RIKKIEALM--RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIM 406
+ +K+ A M R IP+ V + + E +E+ SI D + V
Sbjct: 267 QARKLFAQMSERGIPQS------TVTFNSLMSFEGDYKEV-SSIYDQMQRAGLKPDVVSY 319
Query: 407 RCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466
++ +Y + ++ + + AG R R Y+ + +A VEE ++V K M
Sbjct: 320 SLLIKAYGKARREEEASAVFEEMLDAGIRPTRKSYNILLDAFAISGLVEEAQTVFKTMRR 379
Query: 467 YKID---CSKKTFWIMY 480
++++ CS T + Y
Sbjct: 380 HRVEPDLCSYTTMLLAY 396
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 63/320 (19%), Positives = 127/320 (39%), Gaps = 46/320 (14%)
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ AY G + + + + + K+ P++++ L+ +GR EA F ++ S
Sbjct: 147 LVTAYGKLGDFSRAERVLKYMNKKG-YRPTVISQTALMEAYGRAKQYRKAEAVFHRMQTS 205
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM---KAGPVMPDTNTYLLLLRGYAHSGNL 312
P+ TY ++ + + + E I++ + K PD + +++ Y SG+
Sbjct: 206 GPEPSPITYQIILKSLVEGDKYKEAEAIFEDLLSEKRTFFKPDQKMFHMMIYMYKKSGDY 265
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL--N 370
+ K++ + E + ++ + S S K++ ++ + +P +
Sbjct: 266 AQARKLFAQM------SERGIPQSTVTFNSLMSFEGDYKEVSSIYDQMQRAGLKPDVVSY 319
Query: 371 VLLIRVYAK-------EDCLEEM--------EKSIN---DAF-------EHKTSVTTVRI 405
LLI+ Y K EEM KS N DAF E +T T+R
Sbjct: 320 SLLIKAYGKARREEEASAVFEEMLDAGIRPTRKSYNILLDAFAISGLVEEAQTVFKTMRR 379
Query: 406 MRC---------IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
R ++ +Y + +D F +R + G R +Y + M Y+ VE+
Sbjct: 380 HRVEPDLCSYTTMLLAYVNASDMDGAEKFFRRIKEDGLRPNVVVYGTLMKGYSKLDNVEK 439
Query: 457 MESVLKEMENYKIDCSKKTF 476
+ V + M ++ ++ F
Sbjct: 440 VMRVYERMRMQGVEPNQTIF 459
>gi|356557983|ref|XP_003547289.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 707
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 8/214 (3%)
Query: 170 NNVDLAADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
NNVD A L+ A A K ++AL+ Y G D+C +++++K + P++VT
Sbjct: 254 NNVDKAVSLYDRAIAEKWCLDAAAFSALIKMYSMAGNYDRCLKIYQEMKV-LGVKPNVVT 312
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YNTL+ + +A ++E++ + +SP+ TY L+ Y A +Y+ MK
Sbjct: 313 YNTLLGAMLKAEKHRQAKAIYKEMRSNGVSPDFITYACLLEVYTIAHYSEDALGVYKEMK 372
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347
+ + Y LL YA G + R +E YE+ + ++I YS+ +
Sbjct: 373 GNGMDMTADLYNKLLAMYADMGYIDRAVEIFYEMNSSGTCQPDSWTFASLIAIYSR---S 429
Query: 348 DRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAK 379
++ + E ++ + + ++P + VL L+ Y K
Sbjct: 430 GKVSEAEGMLNEMIQSGFQPTIFVLTSLVHCYGK 463
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 109/290 (37%), Gaps = 19/290 (6%)
Query: 222 ISPS--IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
I PS +V YN + +F + E F E+ + PN FT++ ++ K
Sbjct: 170 IKPSRHVVLYNVTLKLFRASRDFEGAEKLFDEMLQRGVKPNNFTFSTMVN------CANK 223
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV---KHHVDGKEFPLIRA 336
E+++ M PD T ++ YA S N+ + +Y+ K +D F A
Sbjct: 224 PVELFEKMSGFGYEPDGITCSAMVYAYALSNNVDKAVSLYDRAIAEKWCLDAAAF---SA 280
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396
+I YS DR KI M+++ K N LL + E K+I
Sbjct: 281 LIKMYSMAGNYDRCLKIYQEMKVLGVKPNVVTYNTLLGAMLKAEK--HRQAKAIYKEMRS 338
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
C++ Y + + K + G + LY+ + MYA ++
Sbjct: 339 NGVSPDFITYACLLEVYTIAHYSEDALGVYKEMKGNGMDMTADLYNKLLAMYADMGYIDR 398
Query: 457 MESVLKEMENYKIDCSKK--TFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
+ EM N C TF + Y+ G+ + +L M ++G+
Sbjct: 399 AVEIFYEM-NSSGTCQPDSWTFASLIAIYSRSGKVSEAEGMLNEMIQSGF 447
>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
Length = 1512
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ A +G++ + +F ++ A I P +V Y++L+ R + F+E
Sbjct: 1087 TYGMIIDALCKDGMTTEALDMFSEMIG-AGILPDVVVYSSLMDGLCRFGRLKEALEFFKE 1145
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ +S +V+TYN LI G A +W +V +M PD T+ +L+ G G
Sbjct: 1146 MEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGK 1205
Query: 312 LPRMEKIYELVKHHVDGKE 330
+ ++I EL++H GKE
Sbjct: 1206 VGEAQQILELMRHK--GKE 1222
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 12/217 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA--- 248
T+ L+ G + Q + +L + P I+TYNTL++ L LV +E A
Sbjct: 1192 TFTILIDGLCKEGKVGEAQQIL-ELMRHKGKEPDILTYNTLMN---GLCLVGQLEDATKL 1247
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F+ + D + NVF+YN LI GY + ++ M+ + P T TY L+
Sbjct: 1248 FESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQ 1307
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
SG + +K++ V+ G+ L + C +++ L + I + E++P
Sbjct: 1308 SGRVRTAQKLF--VEMQTCGQFLKLSTYCVLLDGLCK-NGHLEEAMDLFQSIKKTEHKPN 1364
Query: 369 LNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV 403
+ V +L+ + LEE K ++ ++ T+
Sbjct: 1365 IEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTI 1401
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 101/248 (40%), Gaps = 44/248 (17%)
Query: 92 LLANVDDLDKVFRVLDEKGS--------------CLFRRHSNGYAFVELMKQLGSRPRLA 137
L+ ++D K+F L ++G C ++ + F E M+ G +P
Sbjct: 1237 LVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKP--- 1293
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE--AANKHLKTIGTYNA 195
+ +T + +GR+ A LF E + LK + TY
Sbjct: 1294 --------------STVTYNTLIGALCQSGRVRT---AQKLFVEMQTCGQFLK-LSTYCV 1335
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
LL NG ++ LF+ +KK + P+I ++ L+ R ++ F EI +
Sbjct: 1336 LLDGLCKNGHLEEAMDLFQSIKKTEH-KPNIEVFSILLDGMCRAGKLEEAWKQFDEISKN 1394
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
L P+ YN LI G M + ++ M+ +PD+ T+ ++++ NL +
Sbjct: 1395 GLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQ------NLLKE 1448
Query: 316 EKIYELVK 323
+I+E ++
Sbjct: 1449 NEIHEAIQ 1456
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 29/154 (18%), Positives = 62/154 (40%), Gaps = 2/154 (1%)
Query: 168 RINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R + A + F E + + + TYN+L+ GL + + F +L + SP
Sbjct: 1132 RFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEV-TWFLNLMVDRGFSPDA 1190
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
T+ LI + V + + ++ P++ TYN L+ G ++++
Sbjct: 1191 FTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFES 1250
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ + + +Y +L+ GY + + +E
Sbjct: 1251 LADRGIKLNVFSYNILINGYCKDQKIDEAFRFFE 1284
>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Brachypodium distachyon]
Length = 613
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/316 (21%), Positives = 133/316 (42%), Gaps = 18/316 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ Y + +F +++ +I TY L++ F R L + E F++
Sbjct: 294 TYTLMINVYGKSKQPMSAMKIFNEMQS-IGCKANICTYTALVNAFAREGLCEKAEEVFEQ 352
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + P+V+ YN L+ Y A EI+ +M+ PD +Y +L+ Y +G
Sbjct: 353 MQQAGHEPDVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGL 412
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP---W 368
E +E +K P +++ + S + + + + E +M + + RP
Sbjct: 413 HREAEATFESLKQQ---GMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFA 469
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL-ANFV- 426
LN +L YA+ L++ME+ + A V V++Y R + ++ A F
Sbjct: 470 LNAML-HAYARAGRLDDMERLL--AAMDLAGSADVGSHNVAVNAYARAGYLGRMEAAFEG 526
Query: 427 ---KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
++ + G + S+M YA ++ + + +EM + T ++
Sbjct: 527 IRRRKGKKGGIDADVVSWTSRMGGYARKKEYGKCLEIFEEMVDAGCYPDAGTAKVL---M 583
Query: 484 ATCGQRRKVNQVLGLM 499
A C R+V QV ++
Sbjct: 584 AACSDERQVEQVAAIV 599
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 186 HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM 245
H + YNAL+ AY G +F L + P +YN L+ +GR L
Sbjct: 358 HEPDVYAYNALMEAYSRAGFPQGASEIF-SLMQHMGCEPDRASYNILVDAYGRAGLHREA 416
Query: 246 EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
EA F+ +K ++P + ++ L++ + + G+ E++ + + PDT +L
Sbjct: 417 EATFESLKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAMLHA 476
Query: 306 YAHSGNLPRMEKI 318
YA +G L ME++
Sbjct: 477 YARAGRLDDMERL 489
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/308 (19%), Positives = 123/308 (39%), Gaps = 38/308 (12%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L+ AY +K +S++ + EA P+ TY L+ + + E E+
Sbjct: 190 YNLLIDAYGRKRQLNKAESIYAAVL-EAQCVPTEDTYALLLRAYCNARSLHRAEGVISEM 248
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL----------- 301
++ + P+ YN + G + A K E+YQ MK +T TY L
Sbjct: 249 QEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYTLMINVYGKSKQP 308
Query: 302 ------------------------LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
L+ +A G + E+++E ++ + A+
Sbjct: 309 MSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYNAL 368
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397
+ AYS+ +I +LM+ + + R N+ L+ Y + E E + ++ + +
Sbjct: 369 MEAYSRAGFPQGASEIFSLMQHMGCEPDRASYNI-LVDAYGRAGLHREAEATF-ESLKQQ 426
Query: 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
T++ ++S++ R V + + + +G R ++ + YA R+++M
Sbjct: 427 GMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAMLHAYARAGRLDDM 486
Query: 458 ESVLKEME 465
E +L M+
Sbjct: 487 ERLLAAMD 494
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/252 (21%), Positives = 100/252 (39%), Gaps = 8/252 (3%)
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
S+ P++ YN LI Y K E IY + +P +TY LLLR Y ++ +L R
Sbjct: 181 SSFRPDIICYNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCNARSLHR 240
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK-EYRPWLNVLL 373
E + ++ H + A + K T +K +E R+ E+ L+
Sbjct: 241 AEGVISEMQEHGIPPSATVYNAYLDGLLKARCT--VKAVEVYQRMKKERCRTNTETYTLM 298
Query: 374 IRVYAKEDCLEEMEKSIND--AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
I VY K K N+ + K ++ T +V+++ R +K ++ +
Sbjct: 299 INVYGKSKQPMSAMKIFNEMQSIGCKANICTY---TALVNAFAREGLCEKAEEVFEQMQQ 355
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
AG Y++ M Y+ + + M++ + + ++ I+ AY G R+
Sbjct: 356 AGHEPDVYAYNALMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHRE 415
Query: 492 VNQVLGLMCKNG 503
+ + G
Sbjct: 416 AEATFESLKQQG 427
>gi|255660942|gb|ACU25640.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 484
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K I P +VTYNT+++ + R+ ++ E F E
Sbjct: 152 TFNVMMWGFFLSGKVETANRFFEDMKSR-EIMPDVVTYNTMVNGYCRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEMKGFGMKPNAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E+V+ ++ + + +I K D + +A++RL
Sbjct: 271 MSEARSILKEMVEKYIAPTDNSIFMRLISGQCKAGDLDAAANVLKAMIRL 320
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 119/258 (46%), Gaps = 12/258 (4%)
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL 212
+T G G++N+ A DLF + +++K + T+N L+ A+ +G + +++
Sbjct: 261 VTYSALISGFCILGKLND---AIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTV 317
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
F D+ + I P+ VTYN+L+ + + V+ ++ F + ++P++ +Y+ +I G+
Sbjct: 318 F-DMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFC 376
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
+ + +++ M ++PD TY L+ G + SG R+ +LV D P
Sbjct: 377 KIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSG---RISYALQLVDQMHDRGVPP 433
Query: 333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSI 390
IR ++ K AL+ + +K +P + +LI+ + LE+ K
Sbjct: 434 TIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVF 493
Query: 391 NDAF--EHKTSVTTVRIM 406
H +V T IM
Sbjct: 494 EGLLVKGHNLNVDTYTIM 511
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 2/140 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
++ V+ A DLF+E +K + + TY+AL+ + G + LF + E NI P +
Sbjct: 237 KVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILE-NIKPDV 295
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
T+N L++ F + + + F + + PN TYN L+ GY K + I+
Sbjct: 296 YTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNT 355
Query: 287 MKAGPVMPDTNTYLLLLRGY 306
M G V PD +Y +++ G+
Sbjct: 356 MAQGGVNPDIQSYSIMINGF 375
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 71/388 (18%), Positives = 157/388 (40%), Gaps = 16/388 (4%)
Query: 129 QLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK 188
QLG P A V + +T KG+ G+I L D A H
Sbjct: 132 QLGLIP-FAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVV-ALGFHFD 189
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
I +Y L+ G + L + + + P++V YNT+I ++ LV+
Sbjct: 190 QI-SYGTLIHGLCKVGETRAALDLLQRVDGNL-VQPNVVMYNTIIDSMCKVKLVNEAFDL 247
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F E+ +SP+V TY+ LI+G+ +++ M + PD T+ +L+ +
Sbjct: 248 FSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCK 307
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G + + +++++ F +++ Y C V + + K +++ + + P
Sbjct: 308 DGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGY--CLVKE-VNKAKSIFNTMAQGGVNPD 364
Query: 369 LN--VLLIRVYAKEDCLEEMEKSIN--DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
+ ++I + K +++ ++++N K + V ++ + +
Sbjct: 365 IQSYSIMINGFCK---IKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQ 421
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
V + G Y+S + +V++ ++L ++++ I + T+ I+
Sbjct: 422 LVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLC 481
Query: 485 TCGQRRKVNQVL-GLMCKNGYDVPVNAF 511
G+ +V GL+ K G+++ V+ +
Sbjct: 482 QSGKLEDARKVFEGLLVK-GHNLNVDTY 508
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 85/213 (39%), Gaps = 23/213 (10%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRL------------------ALEVLNWRRRQAGYG 151
G CL + + + M Q G P + A+ + R+
Sbjct: 339 GYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIP 398
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQ 210
+T G+ +GRI+ A L + ++ + TI TYN++L A DK
Sbjct: 399 DVVTYSSLIDGLSKSGRIS---YALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAI 455
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+L LK + I P++ TY+ LI + ++ F+ + + NV TY +I G
Sbjct: 456 ALLTKLKDKG-IQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQG 514
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
+ ++ + + M+ +PD TY +++
Sbjct: 515 FCVEGLFNEALALLSKMEDNGCIPDAKTYEIII 547
>gi|7529747|emb|CAB86932.1| putative protein [Arabidopsis thaliana]
gi|24030379|gb|AAN41351.1| unknown protein [Arabidopsis thaliana]
Length = 526
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 97/195 (49%), Gaps = 9/195 (4%)
Query: 168 RINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+ N + A +F+ K + ++ TYN+L M S K S D + ++I P +
Sbjct: 202 KAGNYEKARKVFSSMVGKGVPQSTVTYNSL----MSFETSYKEVSKIYDQMQRSDIQPDV 257
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
V+Y LI +GR + + F+E+ D+ + P YN L+ + + M + + +++
Sbjct: 258 VSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKS 317
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR--AMICAYSKC 344
M+ + PD +Y +L Y ++ ++ EK ++ +K VDG E ++ +I Y+K
Sbjct: 318 MRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIK--VDGFEPNIVTYGTLIKGYAKA 375
Query: 345 SVTDRIKKIEALMRL 359
+ +++ ++ MRL
Sbjct: 376 NDVEKMMEVYEKMRL 390
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/303 (20%), Positives = 128/303 (42%), Gaps = 45/303 (14%)
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
+P++++Y L+ +GR ++ EA F+ ++ S P+ TY ++ ++ + + EE
Sbjct: 114 TPNVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEE 173
Query: 283 IYQMM---KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
+++ + K P+ PD Y +++ Y +GN + K++ + GK P ++ +
Sbjct: 174 VFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVF----SSMVGKGVP--QSTVT 227
Query: 340 AYSKCSVTDRIKKIEALMRLIPEKEYRPWL--NVLLIRVYAK----EDCLEEMEKSIN-- 391
S S K++ + + + +P + LLI+ Y + E+ L E+ ++
Sbjct: 228 YNSLMSFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAG 287
Query: 392 ------------DAF-------EHKTSVTTVRIMR---------CIVSSYFRCNAVDKLA 423
DAF + KT ++R R ++S+Y + ++
Sbjct: 288 VRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAE 347
Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
F KR + G+ Y + + YA VE+M V ++M I ++ + A
Sbjct: 348 KFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMDAS 407
Query: 484 ATC 486
C
Sbjct: 408 GRC 410
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/289 (19%), Positives = 114/289 (39%), Gaps = 18/289 (6%)
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
S + + LI+ +G+L + E + +PNV +Y L+ Y E I+
Sbjct: 81 SEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIF 140
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL------IRAMI 338
+ M++ P TY ++L+ + E+++E + +D K+ PL MI
Sbjct: 141 RRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETL---LDEKKSPLKPDQKMYHMMI 197
Query: 339 CAYSKCSVTDRIKKIEALM--RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396
Y K ++ +K+ + M + +P+ V + + E +E+ K I D +
Sbjct: 198 YMYKKAGNYEKARKVFSSMVGKGVPQS------TVTYNSLMSFETSYKEVSK-IYDQMQR 250
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
V ++ +Y R ++ + + AG R Y+ + +A VE+
Sbjct: 251 SDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQ 310
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
++V K M +I ++ M AY + + +G++
Sbjct: 311 AKTVFKSMRRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFE 359
>gi|225450579|ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
mitochondrial [Vitis vinifera]
gi|296089781|emb|CBI39600.3| unnamed protein product [Vitis vinifera]
Length = 498
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 120/263 (45%), Gaps = 23/263 (8%)
Query: 166 AGRINNVDLAA--DLFAEAAN------KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
A R +DL A + A+A N + KT TY ALL Y + DK LF+ LK
Sbjct: 101 ADRAIRIDLLAKTEGIAQAENYFNSLQESAKTNKTYGALLNCYCKENMLDKAVELFKKLK 160
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E N S ++YN +IS++ R+ + + + E+++ ++ +++TYN L+ Y + +
Sbjct: 161 -ELNFVSSALSYNNMISLYLRVGQPEKVPSLVHEMEEKDIPADLYTYNLLMNSYASVKDF 219
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
VE++ MK V D TY L Y +G+ + + ++ + + + R +
Sbjct: 220 EAVEQVLDKMKKRGVERDWFTYGNLANIYVDAGHTKKANYALQKLEQNKNLHDPEAFRML 279
Query: 338 ICAYSKCSVTDRIKKI-EALMRLIPEKEYRPWLNVLLI-----RVYAKEDCLEEMEKSIN 391
I Y++ S + + + E+L P+ + +L +LL V E C +E
Sbjct: 280 INLYARTSNLEGVNRAWESLKLAHPKINNKSYLIMLLALSKLGDVAGLEKCFKE------ 333
Query: 392 DAFEHKTSVTTVRIMRCIVSSYF 414
+E S VR+ ++ SY
Sbjct: 334 --WESGCSTYDVRLSNVMLESYL 354
>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Glycine max]
Length = 525
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 117/266 (43%), Gaps = 35/266 (13%)
Query: 59 FPTLVRLLSETLTYPDARVRKDLTQTVSALRDEL--LANVDDLDKVFRVLDEKG------ 110
F VRLL+E + D VR D+ T + L D L L V + VF ++ ++G
Sbjct: 247 FQGAVRLLNEMVMKED--VRPDV-YTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVV 303
Query: 111 SCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN 170
SC NG+ M + A EV + R G Y+ I ++
Sbjct: 304 SC--NALMNGWCLRGCMSE-------AKEVFD---RMVERGKLPNVISYSTLINGYCKVK 351
Query: 171 NVDLAADLFAEAANKHL--KTIGTYNALLGAYMYNGLSDKCQSLFR----DLKKEANISP 224
VD A L E ++L T+ TYN LL +GLS + L+ + + + +P
Sbjct: 352 MVDEALRLLTEMHQRNLVPDTV-TYNCLL-----DGLSKSGRVLYEWDLVEAMRASGQAP 405
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
++TYN L+ + + +D A FQ I D+ +SPN+ TYN LI G +EI+
Sbjct: 406 DLITYNVLLDDYLKRECLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIF 465
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSG 310
Q++ P+ TY +++ G G
Sbjct: 466 QLLSVKGCRPNIRTYNIMINGLRREG 491
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 90/207 (43%), Gaps = 17/207 (8%)
Query: 123 FVELMKQLGSRPRLALEVLNWRRRQAGYGT-PMTKEEYTKGIKFAGRINNVDLAADLFAE 181
F+ + LG LA V+ + + G+G P T KG+ GR A +L+
Sbjct: 97 FINSLTHLGQM-GLAFSVM-AKIVKRGFGVDPFTLTTLMKGLCLKGRTFE---ALNLYDH 151
Query: 182 AANKHLKTIGTYNALLGAYMYNGLSDKCQS-----LFRDLKKEANISPSIVTYNTLISVF 236
A +K +++ + + NGL ++ L R ++K + P+++ YN ++
Sbjct: 152 AVSKGF----SFDEVCYGTLINGLCKMGKTRDAIELLRKMEK-GGVRPNLIMYNMVVDGL 206
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW-GKVEEIYQMMKAGPVMPD 295
+ LV E+ + +VFTYN LI G+ A + G V + +M+ V PD
Sbjct: 207 CKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPD 266
Query: 296 TNTYLLLLRGYAHSGNLPRMEKIYELV 322
T+ +L+ G + ++ L+
Sbjct: 267 VYTFNILVDALCKLGMVAEARNVFGLM 293
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Query: 175 AADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A L +E K + + TYN+L+ + G L ++ + ++ P + T+N L+
Sbjct: 215 ACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILV 274
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+L +V F + L P+V + N L+ G+ + +E++ M +
Sbjct: 275 DALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKL 334
Query: 294 PDTNTYLLLLRGYA 307
P+ +Y L+ GY
Sbjct: 335 PNVISYSTLINGYC 348
>gi|225456631|ref|XP_002266698.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74750
[Vitis vinifera]
Length = 875
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 96/241 (39%), Gaps = 40/241 (16%)
Query: 119 NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADL 178
+ Y +++KQ+ P +AL W +RQ G+ YT + GR L
Sbjct: 345 DAYQANQVLKQIQDHP-VALGFFYWLKRQTGF--KHDGHTYTTMVGILGRARQFGAINKL 401
Query: 179 FAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
AE + + TYN L+ +Y ++ S+F D +EA P VTY TLI +
Sbjct: 402 LAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVF-DRMQEAGCQPDRVTYCTLIDIHA 460
Query: 238 RLLLVD--------------------------------HMEAA---FQEIKDSNLSPNVF 262
+ +D H+ +A F E+ D PN+
Sbjct: 461 KAGFLDVALHMYQKMQEAHLSPDTFTYSVIINCLGKAGHLTSAHKLFCEMVDQGCVPNLV 520
Query: 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
TYN +IA A + E+Y+ M+ PD TY +++ H G+L E I+ +
Sbjct: 521 TYNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEM 580
Query: 323 K 323
K
Sbjct: 581 K 581
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 9/148 (6%)
Query: 179 FAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ------SLFRDLKKEANISPSIVTYNTL 232
+ AA + L+ + N L+ AY N + + Q F LK++ TY T+
Sbjct: 329 WGPAAEEALRNL---NCLMDAYQANQVLKQIQDHPVALGFFYWLKRQTGFKHDGHTYTTM 385
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
+ + GR + E+ PNV TYN LI Y A + ++ M+
Sbjct: 386 VGILGRARQFGAINKLLAEMVRDGCQPNVVTYNRLIHSYGRANYLNEAVSVFDRMQEAGC 445
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
PD TY L+ +A +G L +Y+
Sbjct: 446 QPDRVTYCTLIDIHAKAGFLDVALHMYQ 473
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 67/146 (45%), Gaps = 2/146 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I + N A +L+ + N + TY+ ++ + G ++ +++F ++K
Sbjct: 522 YNIMIALQAKARNYPTALELYRDMQNAGFQPDKVTYSIVMEVLGHCGHLEEAEAIFTEMK 581
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ N P Y L+ ++G++ V+ +Q + ++ L PNV T N L++ ++
Sbjct: 582 RK-NWVPDEPVYGLLVDLWGKVGNVEKSWEWYQAMLNAGLCPNVPTCNSLLSAFLRVHRL 640
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLL 303
+ Q M + P TY LLL
Sbjct: 641 SDAYNLLQSMLRLGLQPSLQTYTLLL 666
>gi|255660948|gb|ACU25643.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 484
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 2/158 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G D F +K I P ++TYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNFMIWGFFLSGKVDTANRFFEXMKSR-EIMPDVITYNTMINGYYRVKKMEEXENYFME 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDRIDDALRLVEEMKGFGINPNAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+ + I E+V ++ K+ + +I K D
Sbjct: 271 MSEAQSILKEMVDKYIAPKDNSIFLRLISGQCKVGNLD 308
>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Vitis vinifera]
Length = 531
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/353 (19%), Positives = 143/353 (40%), Gaps = 10/353 (2%)
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNAL 196
L NW +G + E Y + I AG++ DLA L ++++ + T+ L
Sbjct: 130 LAFFNWATNLEEFG--HSPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTIL 187
Query: 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256
+ Y+ GL+ + F ++ + P + ++ +IS + ++ F +KD
Sbjct: 188 VRRYVKAGLAAEAVHAFNRME-DYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKD-R 245
Query: 257 LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
P+V Y L+ G+ A + E ++ MK + P+ TY +++ SG + R
Sbjct: 246 FEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAH 305
Query: 317 KIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIR 375
++ E++ D ++ + K T+++ ++ M+ + N LI
Sbjct: 306 DVFSEMIDVGCDPNAITF-NNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYN-FLIE 363
Query: 376 VYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR 435
+ ++D LEE K +N K I + V+ + + R
Sbjct: 364 SHCRDDNLEEAVKILNSV--KKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCR 421
Query: 436 LCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
Y+ M M+A ++ + + + KEM+ +I+ + T+ ++ + G
Sbjct: 422 PNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGH 474
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 1/188 (0%)
Query: 136 LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA 195
LA E ++ R YG K ++ I + A F ++ + Y +
Sbjct: 196 LAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTS 255
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ + G + + +F ++K A I P++ TY+ +I R + F E+ D
Sbjct: 256 LVHGWCRAGNISEAERVFGEMKM-AGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDV 314
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
PN T+N L+ ++ A KV ++Y MK PD TY L+ + NL
Sbjct: 315 GCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEA 374
Query: 316 EKIYELVK 323
KI VK
Sbjct: 375 VKILNSVK 382
>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
Length = 559
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 132/319 (41%), Gaps = 36/319 (11%)
Query: 27 PKTLPPLSVFTLTK--SPNHSFTRDLCAPATHTVFPTLVRLLSET---LTYPDARVRKDL 81
P +L P S+ + K S H F + + T T F ++LSE L + +R K+
Sbjct: 78 PHSLSPPSLLSFFKWLSTQHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNS 137
Query: 82 TQTV------------SALRDELLANV-------DDLDKVFRVLDEKGSCLFRRHSNGYA 122
+V S L +L N D + FR++ K + HS GY
Sbjct: 138 ASSVFTSVLEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLV-RKHNLQIPFHSCGYL 196
Query: 123 FVELMKQLGSRPRLAL--EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
F LMK + P A E+L+ G P ++ + + + ++ A LF
Sbjct: 197 FDRLMKLNLTSPAWAFYEEILDC-------GYPPDVCKFNVLMHRLCKEHKINEAQLLFG 249
Query: 181 EAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
E + L+ T+ ++N L+ Y +G D+ L R E + P + TY+ LI+ +
Sbjct: 250 EIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKR-FMMENRVFPDVFTYSVLINGLCKE 308
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
+D F E+ D L PN T+ LI G+ EIYQ M V PD TY
Sbjct: 309 GQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITY 368
Query: 300 LLLLRGYAHSGNLPRMEKI 318
L+ G G+L +K+
Sbjct: 369 NTLINGLCKVGDLREAKKL 387
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P + +N L+ + ++ + F EI L P V ++N LI GY + + +
Sbjct: 223 PDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRL 282
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ M V PD TY +L+ G G L K++
Sbjct: 283 KRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLF 318
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 59/299 (19%), Positives = 128/299 (42%), Gaps = 7/299 (2%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
++ Q LF ++ K + P++V++NTLI+ + + +D + + ++ + P+VFTY+
Sbjct: 242 NEAQLLFGEIGKRG-LRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSV 300
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
LI G +++ M ++P+ T+ L+ G+ +G +IY+ +
Sbjct: 301 LINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLR-- 358
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLE 384
G + +I C V D +++ + L+ + ++ +P + +LI KE LE
Sbjct: 359 KGVKPDVITYNTLINGLCKVGD-LREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLE 417
Query: 385 EMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSK 444
+ + + + V ++S + R V + ++ AG + + Y
Sbjct: 418 SALEIRKEMVKEGIELDNVAF-TALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMV 476
Query: 445 MVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ + + V+ +LKEM+ T+ ++ GQ + N +L M G
Sbjct: 477 IHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLG 535
>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
Length = 578
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 137/338 (40%), Gaps = 20/338 (5%)
Query: 178 LFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
L E+ +H + + NALL + D + FR + +SP I T+NT+IS
Sbjct: 144 LAGESHPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRR-RVSPDIYTFNTVISGLC 202
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI----YQMMKAGPVM 293
R+ + ++IK L+P+V TYN LI GY G + + +M++AG +
Sbjct: 203 RIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAG-IS 261
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P T+ +L+ GY + N +++E +K ++I CS K+
Sbjct: 262 PTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGL--CSE----GKV 315
Query: 354 EALMRLIPEKE---YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTT---VRIMR 407
E ++L+ E E P N + K C + M ND + T V I
Sbjct: 316 EEGVKLMEEMEDLGLSP--NEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYT 373
Query: 408 CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467
++ Y R ++ + G + Y+ + ++ +L EM+
Sbjct: 374 ILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEK 433
Query: 468 KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
I+ T+ ++ A G+ RK ++L M + G +
Sbjct: 434 GIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLE 471
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 19/192 (9%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y L+ Y G + ++ + K+ ISP++ TYN LI+ F R E+
Sbjct: 372 YTILIDGYRRLGKMEDAMAVKEAMAKKG-ISPNVTTYNCLITGFSRSGDWRSASGLLDEM 430
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
K+ + +V TYN LI K ++ M + P+ TY +++G+ GN+
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNI 490
Query: 313 -------PRMEKIYE---LVKHHVDGKEFPLIRAMICA-------YSKCSVTDRIKKIEA 355
RMEK + +V ++V K F I M A KC V + I E
Sbjct: 491 KSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGI-TYET 549
Query: 356 LMRLIPEKEYRP 367
+ + EK Y P
Sbjct: 550 IKEGMMEKGYTP 561
>gi|293331503|ref|NP_001168643.1| uncharacterized protein LOC100382430 [Zea mays]
gi|223949857|gb|ACN29012.1| unknown [Zea mays]
gi|413933913|gb|AFW68464.1| hypothetical protein ZEAMMB73_255812 [Zea mays]
Length = 500
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 149/330 (45%), Gaps = 34/330 (10%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT 192
R R ALEV W + G+ + K+ + + G+I+ V+ A F ++K KT
Sbjct: 94 RHRQALEVSEWMSLK-GHVKFLPKD-HAIHLDLIGQIHGVEAAETYFNNLSDKD-KTEKP 150
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y ALL Y L DK + FR++K E S + YN L+ ++ R+ + + + E+
Sbjct: 151 YGALLNCYTRELLVDKALAHFRNMK-ELGFVFSTLPYNDLMGLYTRIGQHERVPSVMAEM 209
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP-VMPDTNTYLLLLRGYAHSGN 311
K + + P+ F+Y I Y T + +E + M+ P ++ D NTY ++ Y G+
Sbjct: 210 KSNGIVPDNFSYRICINSYGTRADFFGLENTLEEMECEPQIVVDWNTYAVVASNYI-KGD 268
Query: 312 LPRMEKIYELV---KHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM-----RLIPEK 363
L EK Y + + +D ++ R +I Y K++ A+ R I +
Sbjct: 269 L--REKAYSALSKAEAKLDKQDPDAYRHLISLYGNLGDKSEAKRLWAVQMSNCKRYI-NR 325
Query: 364 EYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
+Y L+VL L + ED L+E E S N +F+ R+ +++ Y + +DK
Sbjct: 326 DYMNMLSVLVKLDEITEAEDLLKEWESSQN-SFD-------FRVPNVLLTGYRQKALLDK 377
Query: 422 ----LANFVKRAE---SAGWRLCRSLYHSK 444
L F+K+ + S W + Y K
Sbjct: 378 AEMLLDGFLKKGKTPPSTSWGIVAIGYAEK 407
>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
Length = 370
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 5/183 (2%)
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNAL 196
L NW Q G+ + E + + + FAG++ DLA + + ++ T+ T++ L
Sbjct: 131 LAFFNWASYQDGFDK--SPEAFNEMVDFAGKVRMFDLAWHVIDLMKARDVEITVETFSIL 188
Query: 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256
+ Y+ GL+ + F + ++ N P + ++ LIS+ R + F +KD
Sbjct: 189 MRRYVRAGLAAEAIHAFNRM-EDYNCKPDKIAFSILISILCRKRRASEAQEFFDSLKD-K 246
Query: 257 LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
P+V Y L+ G+ A + E ++ MK + P+ TY +++ G + R
Sbjct: 247 FEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAH 306
Query: 317 KIY 319
++
Sbjct: 307 DVF 309
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 115/306 (37%), Gaps = 45/306 (14%)
Query: 28 KTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSET-------LTYPD------ 74
KTLPP +T+ P+ S H++ P+++R + E + P
Sbjct: 79 KTLPPDPTYTI---PSLSLDFSQTISTVHSISPSIIRHVIEQSGGVRHGIPVPQVLAFFN 135
Query: 75 -ARVRKDLTQTVSALRD--ELLANVDDLDKVFRVLD-----------EKGSCLFRRHSNG 120
A + ++ A + + V D + V+D E S L RR+
Sbjct: 136 WASYQDGFDKSPEAFNEMVDFAGKVRMFDLAWHVIDLMKARDVEITVETFSILMRRYV-- 193
Query: 121 YAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
R LA E ++ R Y K ++ I R A + F
Sbjct: 194 ------------RAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRKRRASEAQEFFD 241
Query: 181 EAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
+K + Y L+ + G + + +F ++K A I P++ TY+ +I R
Sbjct: 242 SLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKV-AGIKPNVYTYSIVIDSLCRCG 300
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
+ F E+ D+ PN TYN L+ ++ A KV ++Y MK PDT TY
Sbjct: 301 QITRAHDVFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYN 360
Query: 301 LLLRGY 306
L+ +
Sbjct: 361 FLIETH 366
>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
Length = 569
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/287 (21%), Positives = 119/287 (41%), Gaps = 12/287 (4%)
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
D+ +E + +P+ +TYN+LI + R +D ++ D N +P+V TY L++ +
Sbjct: 276 DIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKM 335
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
E++Q M A + PD T+ L+ G G RME EL++ P I
Sbjct: 336 GRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEG---RMEDALELLEEITRRGCPPTI 392
Query: 335 RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP---WLNVLL---IRVYAKEDCLEEMEK 388
C +++++K E L+ + + P N+L+ R + L+ +++
Sbjct: 393 YTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQ 452
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
++ TSV I I+ + R D F + G+ + + + +
Sbjct: 453 LNSEGGPCPTSVAMYAI---ILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFAL 509
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQV 495
+ ++ +L+EM Y T + AY G +K +++
Sbjct: 510 CKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADEL 556
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 72/340 (21%), Positives = 132/340 (38%), Gaps = 12/340 (3%)
Query: 170 NNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ VD A +L E ++ + TY+AL+ D+ +L +P IVT
Sbjct: 198 DRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVT 257
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y+T+I L + A ++ + +P TYN LI GY A + + M
Sbjct: 258 YSTVID---GLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMV 314
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
PD TY L+ + G R++ YEL + V K P +
Sbjct: 315 DDNCAPDVITYTTLMSAFCKMG---RLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEG 371
Query: 349 RIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIM 406
R++ L+ I + P + ++ Y K + + + E+ + D F + V
Sbjct: 372 RMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVAD-FRSRGFVPNTVTY 430
Query: 407 RCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR--RVEEMESVLKEM 464
+V+ R D+ ++ + S G S+ +++ A R R ++ +EM
Sbjct: 431 NILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEM 490
Query: 465 ENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
+ TF + +A Q ++ +++L M K G+
Sbjct: 491 IQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGH 530
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 51/287 (17%), Positives = 106/287 (36%), Gaps = 10/287 (3%)
Query: 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264
L D+ L D+K ++P + +N +I R + H ++++ D++ P+ TY
Sbjct: 95 LLDEAMGLLLDMKSRG-MNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTY 152
Query: 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
L+ G A ++ Q M + +PD T ++++ + ++ E + H
Sbjct: 153 TKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLH 212
Query: 325 HVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL-NVLLIRVYAKEDCL 383
A++ KC D EA+ L+ E R + +++ C
Sbjct: 213 RGMAANAITYSALVDGLCKCERLD-----EAVALLLGEVTRRGFTPDIVTYSTVIDGLCK 267
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
+ D FE + T ++ Y R +D+ + + Y +
Sbjct: 268 AGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTT 327
Query: 444 KMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRR 490
M + R+++ + ++M K+ TF + CG+ R
Sbjct: 328 LMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGL--CGEGR 372
>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Brachypodium distachyon]
Length = 675
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 75/167 (44%), Gaps = 2/167 (1%)
Query: 145 RRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYN 203
R G + Y I G+ N + A D F + ++ + T+N L+ A+
Sbjct: 400 REMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKG 459
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G D+ LF +++ E+N P TYN +I++ G +E E+K+ L PN+ T
Sbjct: 460 GRHDRAMELFEEMR-ESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNIIT 518
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
Y L+ Y + + + E ++MKA + P Y L+ YA G
Sbjct: 519 YTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRG 565
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/347 (19%), Positives = 130/347 (37%), Gaps = 45/347 (12%)
Query: 173 DLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
D A DL A A L AL+ A G + ++LF + I P YN
Sbjct: 252 DAALDLLASAQAIGLTPRSNAVTALISALGGAGRVAEAEALFLEFFLAGEIKPRTRAYNA 311
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L+ + ++ + + E E+ D ++P+ TY+ L+ Y A W + + M+A
Sbjct: 312 LLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADG 371
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351
V P + + +L G+ G+ K F ++R M + +
Sbjct: 372 VKPSSYVFSRILAGFRDRGDW---------------QKAFAVLREMHASGVQ-------- 408
Query: 352 KIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVS 411
P++ + NV +I + K +CL + N E V ++
Sbjct: 409 ---------PDRHF---YNV-MIDTFGKYNCLGHAMDAFNRMREEGIEPDVV-TWNTLID 454
Query: 412 SYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC 471
++ + D+ + + + Y+ + + Q R +E++L EM+ +
Sbjct: 455 AHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVP 514
Query: 472 SKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG-------YDVPVNAF 511
+ T+ + Y G+ ++ + + +M +G Y VNA+
Sbjct: 515 NIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAY 561
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/312 (20%), Positives = 120/312 (38%), Gaps = 38/312 (12%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
++ +L + G K ++ R++ + + P YN +I FG+ + H AF
Sbjct: 378 VFSRILAGFRDRGDWQKAFAVLREMHA-SGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNR 436
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ + P+V T+N LI + + E+++ M+ P T TY +++
Sbjct: 437 MREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMI------NL 490
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
L E+ + + KE L+ +I + V R + + +
Sbjct: 491 LGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEAI-------------- 536
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
+C+E M+ D K S T + +V++Y + D N VK +
Sbjct: 537 ---------ECIEVMKA---DGL--KPSPT---MYHALVNAYAQRGLADHALNVVKAMRA 579
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
G + +S M + RRV E SVL+ M+ + T+ + A Q K
Sbjct: 580 DGLEASTVVLNSLMNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTTLMKALIRIEQFDK 639
Query: 492 VNQVLGLMCKNG 503
V + M +G
Sbjct: 640 VPVIYEEMITSG 651
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y+AL+ AY GL+D ++ + ++ + + S V N+L++ FG V + Q +
Sbjct: 554 YHALVNAYAQRGLADHALNVVKAMRAD-GLEASTVVLNSLMNAFGEDRRVVEAFSVLQFM 612
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
K+++L P+V TY L+ + + KV IY+ M PD +L
Sbjct: 613 KENDLRPDVITYTTLMKALIRIEQFDKVPVIYEEMITSGCAPDRKARAML 662
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+ L DL+ E+ + P ++ LIS F R L D + L+P LI+
Sbjct: 220 ERLLGDLR-ESRLEPDAPLFSDLISAFARAALPDAALDLLASAQAIGLTPRSNAVTALIS 278
Query: 270 GYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
A + E ++ + AG + P T Y LL+GY G+L E++ +
Sbjct: 279 ALGGAGRVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLD 330
>gi|356514762|ref|XP_003526072.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
mitochondrial-like [Glycine max]
Length = 492
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 111/232 (47%), Gaps = 18/232 (7%)
Query: 78 RKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPR-- 135
R++L +S L D ++ V LD+ E+G+ + +G ++K L +R R
Sbjct: 31 RRNLYSRISPLGDPSISVVPVLDEWI----EEGNAV-----DGPHLHHIIKILRTRNRNT 81
Query: 136 LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA 195
ALEV W + G P++ + + GR++ V+ +A+ + ++ + KT + A
Sbjct: 82 QALEVSEW---MSSKGLPISSRDQAVQLDLIGRVHGVE-SAERYLQSLSDGDKTWKVHGA 137
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
LL Y+ GL DK SL + +K +S + YN ++S++ + + + +++K
Sbjct: 138 LLNCYVREGLVDKSLSLMQKMKDMGFVS--FLNYNNIMSLYTQTQQYEKVPGVLEQMKKD 195
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP-VMPDTNTYLLLLRGY 306
+ PN+F+Y I Y VE++ + M+ P + D TY ++ Y
Sbjct: 196 GVPPNIFSYRICINSYCVRGDLANVEKLLEEMEREPHIGIDWITYSMVTNFY 247
>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Glycine max]
Length = 832
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 94/223 (42%), Gaps = 26/223 (11%)
Query: 116 RHSNGYAFVELMKQLGSRPRL------------------ALEVLNWRRRQAGYGTP--MT 155
++S ++ ELMK RP A+E+ N R + TP +T
Sbjct: 271 QYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVVT 330
Query: 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRD 215
G++ N + A ++ K I +YNAL+GAY G+ ++ F +
Sbjct: 331 FTSIIHLYSVCGQVENCEAAFNMMIAEGLK--PNIVSYNALIGAYAARGMDNEAHLFFNE 388
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+K+ P IV+Y +L++ +GR F +K + L PN+ +YN LI Y +
Sbjct: 389 IKQNG-FRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAYGSNG 447
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
+ +I + M+ + P+ + LL A G R KI
Sbjct: 448 LLADAIKILREMEQEGIQPNVVSICTLL---AACGRCSRKVKI 487
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 122/300 (40%), Gaps = 7/300 (2%)
Query: 207 DKCQSLFRDLK-KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
DK +F ++ K++ +P +VT+ ++I ++ V++ EAAF + L PN+ +YN
Sbjct: 308 DKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYN 367
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
LI Y M + + +K PD +Y LL Y S + +I++ +K +
Sbjct: 368 ALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRN 427
Query: 326 VDGKEFPLIRAMICAY-SKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLE 384
A+I AY S + D IK ++R + ++ +P + + + A C
Sbjct: 428 KLKPNLVSYNALIDAYGSNGLLADAIK----ILREMEQEGIQPNVVSICTLLAACGRCSR 483
Query: 385 EME-KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
+++ ++ A E + + S DK K + Y
Sbjct: 484 KVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTV 543
Query: 444 KMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ + E S ++E+ + K+ SK+ + AY+ GQ + LM +G
Sbjct: 544 LISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSG 603
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 89/236 (37%), Gaps = 49/236 (20%)
Query: 180 AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS----- 234
AE L T+ YNA +G+ M G DK L++ ++K+ I VTY LIS
Sbjct: 494 AEMRGIKLNTVA-YNAAIGSCMNVGEYDKAIGLYKSMRKK-KIKTDSVTYTVLISGCCKM 551
Query: 235 ------------------------------VFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264
+ + + E+ F +K S P+V TY
Sbjct: 552 SKYGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTY 611
Query: 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
++ Y A W K +++ M+A + DT L+R + G R+ + E ++
Sbjct: 612 TAMLDAYNAAENWEKAYALFEEMEASSIKLDTIACAALMRSFNKGGQPGRVLSLAESMRE 671
Query: 325 HVDGKEFPLIRAMICA-YSKCSV-------TDRIKKIEALMRLIPEKEYRPWLNVL 372
KE P + S CS+ D IK IE + +I +L+ L
Sbjct: 672 ----KEIPFSDTIFFEMVSACSILQDWRTAVDMIKYIEPSLPVISSGCLNQFLHSL 723
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 119/321 (37%), Gaps = 15/321 (4%)
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G + C +FR LK + N YN +I + R D F E+++ P+V T
Sbjct: 129 GSIEHCNRVFRWLKNQKNYRARNDIYNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVET 188
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
YN +I + A W I M + P +TY L+ SGN + + +
Sbjct: 189 YNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMT 248
Query: 324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL 383
+ G + ++ A+ + + K + L+ RP L I ++ L
Sbjct: 249 ENGVGPDLVTHNIILSAFKSGA---QYSKALSYFELMKGTHIRPDTTTLNIVIHCLVK-L 304
Query: 384 EEMEKSI---NDAFEHKTSVT-TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
+ +K+I N E K+ T V I+ Y C V+ + G +
Sbjct: 305 RQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIV 364
Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
Y++ + YA++ E E++ ++ + AY + K Q+ M
Sbjct: 365 SYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRM 424
Query: 500 CKN-------GYDVPVNAFPS 513
+N Y+ ++A+ S
Sbjct: 425 KRNKLKPNLVSYNALIDAYGS 445
>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 115/277 (41%), Gaps = 23/277 (8%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C + + Y +E MK G P T Y I +I
Sbjct: 628 GFCKSGKVNKAYQLLEEMKTKGHEP--------------------TVVTYGSVIDGLAKI 667
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ +D A LF EA +K ++ + Y++L+ + G D+ + +L ++ ++P++ T
Sbjct: 668 DRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKG-LTPNVYT 726
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
+N L+ + + FQ +KD +PN TY+ LI G + K +Q M+
Sbjct: 727 WNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQ 786
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
P+ TY ++ G A +GN+ + ++E K + + A+I S +
Sbjct: 787 KQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRAS 846
Query: 349 RIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE 385
++ RL Y VLL ++ K +C+E+
Sbjct: 847 DAYRLFEEARLKGCSIYTKTCVVLLDSLH-KAECIEQ 882
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 8/170 (4%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
+ ++ +YN +L G D+ F ++KK+A P++ TYN +I + + ++
Sbjct: 372 IPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDA--IPNLSTYNIMIDMLCKAGKLETAL 429
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
+KD+ L PNV T N ++ A I++ + PD TY L+ G
Sbjct: 430 VVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGL 489
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKI 353
G R+++ Y+L + +D + P + ++I + KC + KI
Sbjct: 490 GRHG---RVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKI 536
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 96/254 (37%), Gaps = 39/254 (15%)
Query: 115 RRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDL 174
R+ + F++ M++L RP + YT I + D
Sbjct: 179 RKLREAFTFIQTMRKLKFRPAFS--------------------AYTNLIGALSTSRDSDC 218
Query: 175 AADLFAE------AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
LF + A N HL + L+ + G D SL ++K + + P +V
Sbjct: 219 MLTLFQQMQELGYAVNVHL-----FTTLIRVFAREGRVDAALSLLDEMKSNS-LEPDVVL 272
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN I FG+ VD F E+K + L + TY +I A + E+++ M
Sbjct: 273 YNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMD 332
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS----KC 344
+P Y ++ GY +G + E Y L++ P + + C S K
Sbjct: 333 QNKQVPCAYAYNTMIMGYGMAG---KFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKG 389
Query: 345 SVTDRIKKIEALMR 358
V + +KK E + +
Sbjct: 390 QVDEALKKFEEMKK 403
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 15/220 (6%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I+ GR VD A L+ + + + Y +L+ + G + ++ ++
Sbjct: 482 YCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEML 541
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ SP ++ NT + + ++ A FQEIK+ P+ +Y LI G + A
Sbjct: 542 R-LGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFA 600
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+ E++ MK + DT Y ++ G+ SG ++ K Y+L++ P +
Sbjct: 601 HEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSG---KVNKAYQLLEEMKTKGHEPTV--- 654
Query: 338 ICAYSKCSVTDRIKKI----EALMRLIPEKEYRPWLNVLL 373
+ SV D + KI EA M K LNV++
Sbjct: 655 ---VTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVI 691
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
Query: 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264
L D C S+F L + P VTY +LI GR VD ++++ D+N PN Y
Sbjct: 460 LDDAC-SIFEGLDHKT-CRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVY 517
Query: 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH----SGNLPRMEKIYE 320
LI + +IY M PD LLLL Y +G + + +++
Sbjct: 518 TSLIRNFFKCGRKEDGHKIYNEMLRLGCSPD----LLLLNTYMDCVFKAGEIEKGRALFQ 573
Query: 321 LVKH 324
+K+
Sbjct: 574 EIKN 577
>gi|3107905|dbj|BAA25906.1| leaf protein [Ipomoea nil]
Length = 665
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 97/466 (20%), Positives = 181/466 (38%), Gaps = 50/466 (10%)
Query: 65 LLSETLTYPDARVR------KDLTQTVSALRDELLANV------DDLDKVFRVLDEKGS- 111
L+S ++YP VR D QTV + R +L+ + ++ + + L E+G
Sbjct: 42 LVSTPVSYPTQVVRCTACWGNDGCQTVRS-RTKLMKTLIERGKPQEVHSITKGLTEEGHR 100
Query: 112 CLFRRHSNGYAFVELMKQLGSRPRLALEV-LNWRRRQAGYGTPMTKEEYTKGIKFAGRIN 170
++ A + L K+ S P L +V N R + + PM G
Sbjct: 101 PTLVTYTTVLAALTLQKRFKSIPLLLKKVEQNGLRPDSIFFNPMINAFCESG-------- 152
Query: 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
NV A +F + K K T T+NAL+ + G ++ L + +E NI P TY
Sbjct: 153 NVKEAMKIFRKMREKGCKPTASTFNALIKGFGIIGKPEESSKLLEIMSREENIKPDDRTY 212
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
N L+ + ++ + + L P+V TYN + Y + E+ M+
Sbjct: 213 NILVQAWCNKNNIEKAWGVVHRMVGAGLKPDVVTYNTIARAYARGKETSRAAELISQMQN 272
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEK-IYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
V P+ T +++ GY+ GN+ K IY++ V F + +++ + +TD
Sbjct: 273 NKVAPNVRTCGIVVDGYSKEGNMADALKFIYKMQGFGVHPNLF-IFNSLLKGF--LDITD 329
Query: 349 RIKKIEALMRLIPEKEYRP-----------WLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397
K ++ + L+ E +P W + L+ E C E + I E
Sbjct: 330 -TKGVDETLTLMQEFGVKPDVVTYSTIMNAWSSAGLM-----EKCEEMFQDMIKSGIEPD 383
Query: 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
++ + Y R K ++ + G ++ + + + S ++E+
Sbjct: 384 NHAFSI-----LAKGYVRAGEPKKAEALLEAMATHGAHPNVVMFTTIISGWCSAAKMEDA 438
Query: 458 ESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
V M + + TF + + Y + K ++L +M + G
Sbjct: 439 LRVYDRMCRMDVQPNLNTFETLIWGYGEANEPWKAEELLQIMEEMG 484
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 86/220 (39%), Gaps = 45/220 (20%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEA------------------------------- 220
TY+ ++ A+ GL +KC+ +F+D+ K
Sbjct: 351 TYSTIMNAWSSAGLMEKCEEMFQDMIKSGIEPDNHAFSILAKGYVRAGEPKKAEALLEAM 410
Query: 221 ---NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P++V + T+IS + ++ + + ++ PN+ T+ LI GY A
Sbjct: 411 ATHGAHPNVVMFTTIISGWCSAAKMEDALRVYDRMCRMDVQPNLNTFETLIWGYGEANEP 470
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV---DGKEFPLI 334
K EE+ Q+M+ V+P NT L+ + G + ++I + V E P+
Sbjct: 471 WKAEELLQIMEEMGVLPRKNTVQLVADAWRAIGFINEAKRILNDDQSSVLIPRTDEKPVE 530
Query: 335 RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI 374
+ Y +K + +P+ + RP LN ++
Sbjct: 531 EDLQRVYQ--------EKTNGSYKTLPDNDKRPTLNAKMV 562
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 56/332 (16%), Positives = 138/332 (41%), Gaps = 8/332 (2%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
N +T+ + L+ + G + S+ + L +E + P++VTY T+++
Sbjct: 61 GNDGCQTVRSRTKLMKTLIERGKPQEVHSITKGLTEEGH-RPTLVTYTTVLAALTLQKRF 119
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
+ ++++ + L P+ +N +I + + + +I++ M+ P +T+ L
Sbjct: 120 KSIPLLLKKVEQNGLRPDSIFFNPMINAFCESGNVKEAMKIFRKMREKGCKPTASTFNAL 179
Query: 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM-ICAYSKCSVTDRIKKIEALMRLIP 361
++G+ G K+ E++ + K P R I + C+ + I+K ++ +
Sbjct: 180 IKGFGIIGKPEESSKLLEIMSREENIK--PDDRTYNILVQAWCN-KNNIEKAWGVVHRMV 236
Query: 362 EKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
+P + + R YA+ + I+ +K + VR +V Y + +
Sbjct: 237 GAGLKPDVVTYNTIARAYARGKETSRAAELISQMQNNKVA-PNVRTCGIVVDGYSKEGNM 295
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
F+ + + G +++S + + + ++ L M+ + + T+ +
Sbjct: 296 ADALKFIYKMQGFGVHPNLFIFNSLLKGFLDITDTKGVDETLTLMQEFGVKPDVVTYSTI 355
Query: 480 YYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
A+++ G K ++ M K+G + +AF
Sbjct: 356 MNAWSSAGLMEKCEEMFQDMIKSGIEPDNHAF 387
>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 115/277 (41%), Gaps = 23/277 (8%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C + + Y +E MK G P T Y I +I
Sbjct: 628 GFCKSGKVNKAYQLLEEMKTKGHEP--------------------TVVTYGSVIDGLAKI 667
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ +D A LF EA +K ++ + Y++L+ + G D+ + +L ++ ++P++ T
Sbjct: 668 DRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKG-LTPNVYT 726
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
+N L+ + + FQ +KD +PN TY+ LI G + K +Q M+
Sbjct: 727 WNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQ 786
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
P+ TY ++ G A +GN+ + ++E K + + A+I S +
Sbjct: 787 KQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLSNANRAS 846
Query: 349 RIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE 385
++ RL Y VLL ++ K +C+E+
Sbjct: 847 DAYRLFEEARLKGCSIYTKTCVVLLDSLH-KAECIEQ 882
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 96/254 (37%), Gaps = 39/254 (15%)
Query: 115 RRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDL 174
R+ + F++ M++L RP + YT I + D
Sbjct: 179 RKLREAFTFIQTMRKLKFRPAFS--------------------AYTNLIGALSTSRDSDC 218
Query: 175 AADLFAE------AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
LF + A N HL + L+ + G D SL ++K + + P +V
Sbjct: 219 MLTLFQQMQELGYAVNVHL-----FTTLIRVFAREGRVDAALSLLDEMKSNS-LEPDVVL 272
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN I FG+ VD F E+K + L + TY +I A + E+++ M
Sbjct: 273 YNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMD 332
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS----KC 344
+P Y ++ GY +G + E Y L++ P + + C S K
Sbjct: 333 QNKQVPCAYAYNTMIMGYGMAG---KFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKG 389
Query: 345 SVTDRIKKIEALMR 358
V + +KK E + +
Sbjct: 390 QVDEALKKFEEMKK 403
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 15/220 (6%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I+ GR VD A L+ + + + Y +L+ + G + ++ ++
Sbjct: 482 YCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEML 541
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ SP ++ NT + + ++ A FQEIK+ P+ +Y LI G + A
Sbjct: 542 R-LGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFA 600
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+ E++ MK + DT Y ++ G+ SG ++ K Y+L++ P +
Sbjct: 601 HEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSG---KVNKAYQLLEEMKTKGHEPTV--- 654
Query: 338 ICAYSKCSVTDRIKKI----EALMRLIPEKEYRPWLNVLL 373
+ SV D + KI EA M K LNV++
Sbjct: 655 ---VTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVI 691
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
Query: 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264
L D C S+F L + P VTY +LI GR VD ++++ D+N PN Y
Sbjct: 460 LDDAC-SIFEGLDHKT-CRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVY 517
Query: 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH----SGNLPRMEKIYE 320
LI + +IY M PD LLLL Y +G + + +++
Sbjct: 518 TSLIRNFFKCGRKEDGHKIYNEMLRLGCSPD----LLLLNTYMDCVFKAGEIEKGRALFQ 573
Query: 321 LVKH 324
+K+
Sbjct: 574 EIKN 577
>gi|168056841|ref|XP_001780426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695174|dbj|BAD67152.1| PpPPR_38 [Physcomitrella patens]
gi|162668102|gb|EDQ54716.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 513
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/318 (20%), Positives = 130/318 (40%), Gaps = 8/318 (2%)
Query: 184 NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
+ L ++ YN+ L + +G ++F+ + A + P +V+Y LI FG+L +
Sbjct: 139 DSQLNSVKDYNSALLNCVKDGRMRDAMTIFKRFEG-AGLKPDVVSYTALIQGFGKLKSYN 197
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
+ F ++ + P++ LI+ Y + E Q +A + PD Y L+
Sbjct: 198 KVTDVFSRMQRNRCPPDLKLCTVLISTYGNGGLPVLAESAMQYAQAQGLQPDAIAYTALV 257
Query: 304 RGYAHSGNLPRMEKIYE--LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIP 361
YA G EK L VD + + A++ AY K +TD + KI M+
Sbjct: 258 HAYAQEGLWEEAEKTLSDMLDVGIVDDRPYA---ALVAAYGKAGLTDNVNKILETMKASG 314
Query: 362 EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
+ N LI +++K + E+ +++ + ++ +Y R
Sbjct: 315 VEASTTLYNT-LINIHSKAEAPEK-ARAVLQLMQADGCQCDEITYTSVMEAYSRNKQPLM 372
Query: 422 LANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYY 481
+ + + AG + Y + Y R+ + E +L+ M+N K + + + +M
Sbjct: 373 AESMMGEMKRAGIQPGPVSYGVLISAYCRAGRLGDAERILRAMQNAKCKPTVEIYNMMIS 432
Query: 482 AYATCGQRRKVNQVLGLM 499
YA+ R + ++ M
Sbjct: 433 GYASAKMRSQAERMFQTM 450
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 18/144 (12%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY +++ AY N +S+ ++K+ A I P V+Y LIS + R + E +
Sbjct: 356 TYTSVMEAYSRNKQPLMAESMMGEMKR-AGIQPGPVSYGVLISAYCRAGRLGDAERILRA 414
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN-------------- 297
++++ P V YN +I+GY +A M + E ++Q M+ + PD
Sbjct: 415 MQNAKCKPTVEIYNMMISGYASAKMRSQAERMFQTMQDCGLRPDAAEDCYIRMQQLGCKP 474
Query: 298 ---TYLLLLRGYAHSGNLPRMEKI 318
TY +LL+ Y N E+I
Sbjct: 475 NAVTYKILLKAYTDYNNSIDAERI 498
>gi|147771903|emb|CAN75708.1| hypothetical protein VITISV_031421 [Vitis vinifera]
Length = 1313
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 139/326 (42%), Gaps = 20/326 (6%)
Query: 168 RINNVDLAAD--LFAEAANKHL--------KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
R+ +D A+ L+AEA N + K + YN ++ AY L DK SLF+ ++
Sbjct: 827 RVAIIDAYAEKGLWAEAENVFIGKRDLGQKKDVVEYNVMVKAYGKAKLYDKAFSLFKGMR 886
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P+ TYN+LI +F LVD E++ P T++ +IA Y
Sbjct: 887 NHGTW-PNESTYNSLIQMFSGGDLVDEARDILAEMQKMGFKPQCLTFSAVIACYARLGRL 945
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+Y+ M V P+ Y L+ G++ +GN+ + + ++ ++
Sbjct: 946 PDAVGVYEEMVRLGVKPNEVVYGSLINGFSETGNVEEALCYFRKMDEFGISANQIVLTSL 1005
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL--NVLLIRVYAKEDCLEEMEKSINDAFE 395
I AYSK + K + M+ + E P + + +I +YA + E K I D
Sbjct: 1006 IKAYSKVGCLEGAKTLYEGMK---DLEGGPDIVASNSMINLYADLGLVSE-AKLIFDDLR 1061
Query: 396 HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW-RLCRSLYHSKMVMYASQRRV 454
K S V ++ Y +D+ + + +G+ R C S ++ M YA+ ++
Sbjct: 1062 QKGSADGVSFA-TMMYLYKNLGMLDEAIDVADEMKQSGFLRDCAS-FNKVMACYATNGQL 1119
Query: 455 EEMESVLKEMENYKIDCSKKTFWIMY 480
+L EM + +I TF +M+
Sbjct: 1120 SACGELLHEMISRRILPDTGTFKVMF 1145
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 105/441 (23%), Positives = 173/441 (39%), Gaps = 61/441 (13%)
Query: 58 VFP------TLVRLLSETLTYPDA-RVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKG 110
VFP T+VR+L + + A R +D L D L +V D D DE G
Sbjct: 555 VFPDEVTMNTVVRVLKDAGEFDWADRFYRDWCVGKVELGDFDLESVADSD------DEIG 608
Query: 111 SC-LFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
S + +H + EL K G RP +++ P Y I G+
Sbjct: 609 SAPVSLKH---FLSTELFKIGGRRP--ISNIMDSSNTDGSRHKPRLTATYNTLIDLYGKA 663
Query: 170 NNVDLAADLFAE--AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+ AAD+FAE + TI T+N ++ +G + ++L +++ E ISP
Sbjct: 664 GRLKDAADVFAEMLKLGVAMDTI-TFNTMIYTCGSHGHLSEAETLLTEME-ERGISPDTK 721
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TYN +S++ +D +++I++ L P+V T+ ++ M G+VE + M
Sbjct: 722 TYNIFLSLYADGGNIDAALKCYRKIREVGLFPDVVTHRAVLHVLCERNMVGEVETVIAEM 781
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347
K V D ++ ++++ Y + G L + KI+ D A+I AY++
Sbjct: 782 KRSRVRVDEHSIPVVIKMYVNEGLLDK-AKIFLEEHLLEDELSSRTRVAIIDAYAEKG-- 838
Query: 348 DRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMR 407
L E E NV + K D K V +M
Sbjct: 839 -----------LWAEAE-----NVFI----GKRD------------LGQKKDVVEYNVM- 865
Query: 408 CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467
V +Y + DK + K + G S Y+S + M++ V+E +L EM+
Sbjct: 866 --VKAYGKAKLYDKAFSLFKGMRNHGTWPNESTYNSLIQMFSGGDLVDEARDILAEMQKM 923
Query: 468 KIDCSKKTFWIMYYAYATCGQ 488
TF + YA G+
Sbjct: 924 GFKPQCLTFSAVIACYARLGR 944
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 132/312 (42%), Gaps = 24/312 (7%)
Query: 195 ALLGAYMYNGLSDKCQSLF---RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
A++ AY GL + +++F RDL ++ ++ V YN ++ +G+ L D + F+
Sbjct: 829 AIIDAYAEKGLWAEAENVFIGKRDLGQKKDV----VEYNVMVKAYGKAKLYDKAFSLFKG 884
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ PN TYN LI + + + +I M+ P T+ ++ YA G
Sbjct: 885 MRNHGTWPNESTYNSLIQMFSGGDLVDEARDILAEMQKMGFKPQCLTFSAVIACYARLGR 944
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
LP +Y E+V+ V E + ++I +S+ + EAL E+ N
Sbjct: 945 LPDAVGVYEEMVRLGVKPNEV-VYGSLINGFSETGNVE-----EALCYFRKMDEFGISAN 998
Query: 371 VL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
+ LI+ Y+K CLE K++ + + + +++ Y V +
Sbjct: 999 QIVLTSLIKAYSKVGCLEG-AKTLYEGMKDLEGGPDIVASNSMINLYADLGLVSEAKLIF 1057
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI--DCSKKTFWIMYYAYA 484
G S + + M +Y + ++E V EM+ DC+ +F + YA
Sbjct: 1058 DDLRQKGSADGVS-FATMMYLYKNLGMLDEAIDVADEMKQSGFLRDCA--SFNKVMACYA 1114
Query: 485 TCGQRRKVNQVL 496
T GQ ++L
Sbjct: 1115 TNGQLSACGELL 1126
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/276 (19%), Positives = 108/276 (39%), Gaps = 16/276 (5%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F +K + + P+++ YN ++ V GR D + + E+ + + P TY L+ Y
Sbjct: 475 VFEWIKSQEDYVPNVIHYNVVLRVLGRAQKWDELRLCWIEMAKNGVLPTNNTYGMLVDVY 534
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
A + + + MK V PD T ++R +G ++ Y +++
Sbjct: 535 GKAGLVKEALLWIKHMKLRGVFPDEVTMNTVVRVLKDAGEFDWADRFY---------RDW 585
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN 391
+ + + + SV D +I + + +L+ L ++ + M+ S
Sbjct: 586 CVGKVELGDFDLESVADSDDEIGS-----APVSLKHFLSTELFKIGGRRPISNIMDSSNT 640
Query: 392 DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451
D HK +T ++ Y + + A+ G + +++ + S
Sbjct: 641 DGSRHKPRLTAT--YNTLIDLYGKAGRLKDAADVFAEMLKLGVAMDTITFNTMIYTCGSH 698
Query: 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+ E E++L EME I KT+ I YA G
Sbjct: 699 GHLSEAETLLTEMEERGISPDTKTYNIFLSLYADGG 734
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 88/194 (45%), Gaps = 5/194 (2%)
Query: 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAAN-KHLKTIGTYNALL 197
E L + R+ +G + T IK ++ ++ A L+ + + I N+++
Sbjct: 982 EALCYFRKMDEFGISANQIVLTSLIKAYSKVGCLEGAKTLYEGMKDLEGGPDIVASNSMI 1041
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
Y GL + + +F DL+++ S V++ T++ ++ L ++D E+K S
Sbjct: 1042 NLYADLGLVSEAKLIFDDLRQKG--SADGVSFATMMYLYKNLGMLDEAIDVADEMKQSGF 1099
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
+ ++N ++A Y T E+ M + ++PDT T+ ++ G LP E
Sbjct: 1100 LRDCASFNKVMACYATNGQLSACGELLHEMISRRILPDTGTFKVMFT-VLKKGGLP-TEA 1157
Query: 318 IYELVKHHVDGKEF 331
+ +L + +GK +
Sbjct: 1158 VTQLESSYQEGKPY 1171
Score = 42.0 bits (97), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN + AY +G DK +F ++ E + P +VTY L +G+ +++ ++ + ++
Sbjct: 1209 YNVAIYAYGASGSIDKALKMFMKMQDEG-LEPDLVTYINLAGCYGKAGMLEGLKRIYSQL 1267
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
K + PN + +I Y +A E + Q MK
Sbjct: 1268 KYREIEPNESLFKAIIDAYRSAKRHDLAELVSQEMK 1303
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
+ C++ L E ++ S YN I +G +D F +++D L P++ TY
Sbjct: 1192 ESCETF---LNAEVDLDSSF--YNVAIYAYGASGSIDKALKMFMKMQDEGLEPDLVTYIN 1246
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
L Y A M ++ IY +K + P+ + + ++ Y + E + + +K
Sbjct: 1247 LAGCYGKAGMLEGLKRIYSQLKYREIEPNESLFKAIIDAYRSAKRHDLAELVSQEMKFAF 1306
Query: 327 DGKEFPL 333
D PL
Sbjct: 1307 DTTMLPL 1313
>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g31400, chloroplastic; Flags: Precursor
gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
Length = 918
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 126/289 (43%), Gaps = 30/289 (10%)
Query: 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALL 197
E LN G + + Y + ++ + A D+ E A+ +K + TYNALL
Sbjct: 427 EALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALL 486
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
G Y G D+ + +F ++K+E ++ P+++TY+TLI + + L F+E K + L
Sbjct: 487 GGYGKQGKYDEVKKVFTEMKRE-HVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGL 545
Query: 258 SPNVFTYNYLIAGYMTAWMWGK-VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
+V Y+ LI + G V I +M K G + P+ TY ++ + S + R
Sbjct: 546 RADVVLYSALIDALCKNGLVGSAVSLIDEMTKEG-ISPNVVTYNSIIDAFGRSATMDRSA 604
Query: 317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRV 376
+ +G P + + A ++ T+ + I+ +L E R
Sbjct: 605 D-------YSNGGSLPFSSSALSALTE---TEGNRVIQLFGQLTTESNNR---------- 644
Query: 377 YAKEDCLEEMEK--SINDAFE--HKTSVT-TVRIMRCIVSSYFRCNAVD 420
+DC E M++ I + F H+ + V I+++ RCN+ +
Sbjct: 645 -TTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFE 692
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/293 (19%), Positives = 119/293 (40%), Gaps = 2/293 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYNA++ A G+ K + F D + + P +T+N+L++V R L + F E
Sbjct: 305 TYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDE 364
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + + +VF+YN L+ EI M +MP+ +Y ++ G+A +G
Sbjct: 365 MTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGR 424
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ +++ + ++ Y+K ++ I M + K+ N
Sbjct: 425 FDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNA 484
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
LL Y K+ +E++K + + + + + ++ Y + + + +S
Sbjct: 485 LL-GGYGKQGKYDEVKKVFTE-MKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKS 542
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
AG R LY + + V S++ EM I + T+ + A+
Sbjct: 543 AGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFG 595
>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g20300, mitochondrial; Flags: Precursor
gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
contains multiple PPR PF|01535 repeats [Arabidopsis
thaliana]
gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 537
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 1/186 (0%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT 192
R LA E ++ R YG K ++ I R A F ++ +
Sbjct: 198 RAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIV 257
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y L+ + G + + +F+++K A I P++ TY+ +I R + F ++
Sbjct: 258 YTNLVRGWCRAGEISEAEKVFKEMKL-AGIEPNVYTYSIVIDALCRCGQISRAHDVFADM 316
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
DS +PN T+N L+ ++ A KV ++Y MK PDT TY L+ + NL
Sbjct: 317 LDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENL 376
Query: 313 PRMEKI 318
K+
Sbjct: 377 ENAVKV 382
>gi|168057629|ref|XP_001780816.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667751|gb|EDQ54373.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 397
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 97/210 (46%), Gaps = 4/210 (1%)
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNAL 196
++V W ++Q GY + YTK I+ G+ A LF E ++ ++ TY L
Sbjct: 6 IQVFTWWKQQDGYRP--CELHYTKFIRMLGQARMPTEARALFIEMCGVGIRPSVVTYTCL 63
Query: 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256
L +Y G ++ + + D+ + + + L+ +G+ + D M F +K
Sbjct: 64 LQSYAERGQFEEAELILEDMILSVSWT-YVFMCTGLMHAYGKYRMYDGMWRTFNRMKTGG 122
Query: 257 LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
+ P+ F Y LI Y ++ +++ I + M + D+ T + + YA +G + ME
Sbjct: 123 VPPDEFAYRTLIKAYAQGGLFDRMQLIAKEMSLDGMYADSATLNAVAQAYAEAGLVKEME 182
Query: 317 KIYELVKHHVDGKEFPLIRAMICAYSKCSV 346
K YE+++ + I+AM+ Y + S+
Sbjct: 183 KHYEILRKYSFIPNRTTIKAMVWTYVRNSL 212
>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
Length = 791
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 91/429 (21%), Positives = 173/429 (40%), Gaps = 26/429 (6%)
Query: 97 DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPM 154
D +D V R + E SC+ + ++ L+K L +R + ALE+L+ G G+
Sbjct: 140 DAMDIVLRRMTEL-SCM----PDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAP 194
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLF 213
YT I + + D A + E ++ + + TY++++ A DK +
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVL 254
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+ K + P+ +TYN+++ + ++++ + P+V TYN L+
Sbjct: 255 TTMVKNG-VMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCK 313
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
+ +I+ M + PD TY LL+GYA G L M + +L+ + + +
Sbjct: 314 NGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHV 373
Query: 334 IRAMICAYSKCSVTDRIKKIEALMR---LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI 390
+ICAY+K D + + MR L P + +L + + +D + E+ I
Sbjct: 374 FNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMI 433
Query: 391 NDAFEHKTSVTTVRIMR-CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYA 449
++ V T I CI + DK + G L ++S + +
Sbjct: 434 DEGLTPNIIVYTSLIHSLCIFDKW------DKAEELILEMLDRGICLNTIFFNSIIHSHC 487
Query: 450 SQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG------ 503
+ RV E E + M + + T+ + Y G+ + ++L M G
Sbjct: 488 KEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCV 547
Query: 504 -YDVPVNAF 511
Y+ +N +
Sbjct: 548 TYNTLINGY 556
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ Y G D+ L + + P VTYNTLI+ + R+ +D A F+E
Sbjct: 513 TYSTLIDGYCLAGKMDEATKLLSSMFS-VGMKPDCVTYNTLINGYCRVSRMDDALALFKE 571
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ S +SPN+ TYN ++ G +E+Y + + +TY ++L G
Sbjct: 572 MVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHG 625
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 1/124 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
TI TYNALL + +G ++ L R ++ + +SP +V+Y+T+I+ F R +D
Sbjct: 412 TIVTYNALLNGHCVSGRMEEAIGLLRGMEGKG-LSPDVVSYSTIIAGFCRYQELDRAFQM 470
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
E+ + +SP+ TY+ LI G + +++Q M ++PD TY L+ GY
Sbjct: 471 NAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCK 530
Query: 309 SGNL 312
G+L
Sbjct: 531 EGDL 534
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 84/373 (22%), Positives = 148/373 (39%), Gaps = 28/373 (7%)
Query: 145 RRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA-NKHLKTIGTYNALLGAYMYN 203
R G + Y I+ N+++ F E N+ L + TYN ++GAY
Sbjct: 192 REMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKL 251
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
D+ L R + E + P+++TYN +I+ R+ ++ E+ +P+ T
Sbjct: 252 KRIDEAFKLLRSMGLEG-LEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVT 310
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
YN L+ GY + + ++ M + PD TY L+ +GNL R + ++ +
Sbjct: 311 YNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFD--Q 368
Query: 324 HHVDG--KEFPLIRAMICAYSKCSVTDRIKKI-EALMRLIPEKEYRPWL---NVLLIRVY 377
HV G ++I +S+ D +I + ++R + P + N LL
Sbjct: 369 MHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIR----SGFPPTIVTYNALL---- 420
Query: 378 AKEDCLE-EMEKSIN--DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW 434
C+ ME++I E K V I++ + R +D+ G
Sbjct: 421 -NGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGV 479
Query: 435 RLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQ 494
Y S + QRR+ E + +EM N + + T+ + Y G +N+
Sbjct: 480 SPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGD---LNE 536
Query: 495 VLGL---MCKNGY 504
L L M K G+
Sbjct: 537 ALNLHDEMIKKGF 549
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 6/155 (3%)
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLL-VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
DL K P +++YN ++ R V E ++E+ S +S NVF+YN LI G+
Sbjct: 156 DLAKLNGFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCA 215
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH-HVDGKEFP 332
A ++ M+ +P+ TY ++ Y L R+++ ++L++ ++G E
Sbjct: 216 AGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCK---LKRIDEAFKLLRSMGLEGLEPN 272
Query: 333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
L+ + C V RI++ ++ + K + P
Sbjct: 273 LLTYNMVINGLCRV-GRIEETSGVLAEMDRKGFAP 306
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 17/162 (10%)
Query: 175 AADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A DLF E NK L TY +L+ Y G ++ +L ++ K+ + P VTYN LI
Sbjct: 502 ACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFL-PDTVTYNVLI 560
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA---------------GYMTAWMWG 278
+ + + ++ PN TY+ LI G+ +
Sbjct: 561 NGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMN 620
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ +++++ M P+ Y +++ G+ GN+ + K+Y+
Sbjct: 621 EADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYK 662
>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1163
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 7/176 (3%)
Query: 150 YGTPMTKEEYTKGIKFAGRINN--VDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLS 206
YG +T + YT I G N VD F E + K + TYN L+ G
Sbjct: 221 YG--VTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKV 278
Query: 207 DKCQSLFRDL-KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
+ ++ + KK N++P +VTY TL+ + +D F+E+ L PN TYN
Sbjct: 279 NIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITYN 338
Query: 266 YLIAGYMTAWMWGKVEEIYQ-MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
LI G K+++I++ + G +PDT T L+ + ++GNL +++E
Sbjct: 339 TLIKGLCEVQKIDKIKQIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFE 394
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 18/192 (9%)
Query: 176 ADLFAEAAN--KHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
A LF E+ +K++G T+N+LL + G ++ QS+F ++ ++P
Sbjct: 169 AGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEMLSTYGVTPDTY 228
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
T+N LI F + +VD F+E+ P++ TYN L+ G A GKV + ++
Sbjct: 229 TFNILIRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRA---GKVNIAHNVV 285
Query: 288 -----KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAY 341
K+ + PD TY L+RGY + ++ E+V + E +I
Sbjct: 286 NGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEALVVFEEMVSKGLKPNEITY-NTLIKGL 344
Query: 342 SKCSVTDRIKKI 353
+ D+IK+I
Sbjct: 345 CEVQKIDKIKQI 356
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMM 287
+N+LI +G+ L F +K +SP+V T+N L+ + + ++ +M+
Sbjct: 159 FNSLIRSYGKAGLFQESVQVFNSMKSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEML 218
Query: 288 KAGPVMPDTNTYLLLLRGY 306
V PDT T+ +L+RG+
Sbjct: 219 STYGVTPDTYTFNILIRGF 237
>gi|357163843|ref|XP_003579864.1| PREDICTED: pentatricopeptide repeat-containing protein At5g09450,
mitochondrial-like [Brachypodium distachyon]
Length = 422
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 77/138 (55%), Gaps = 4/138 (2%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT 192
R + ALEV W + + + +++ +Y I ++ + A D F E K++
Sbjct: 115 RYKHALEVAEWMKTH--HESDLSENDYGVRIDLITKVFGANAAEDFF-EKLPSEAKSLEA 171
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y ALL +Y + ++DK + LF + K+A++S ++ YN +++++ + +D + A +E+
Sbjct: 172 YTALLHSYARSKMTDKAERLFERM-KDADLSIDVLVYNEMMTLYISVGELDKVPAVAEEL 230
Query: 253 KDSNLSPNVFTYNYLIAG 270
K N+SP++FTYN I+
Sbjct: 231 KRQNVSPDLFTYNLRISA 248
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 95/216 (43%), Gaps = 12/216 (5%)
Query: 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
++ + F L EA S+ Y L+ + R + D E F+ +KD++LS +V YN
Sbjct: 152 ANAAEDFFEKLPSEAK---SLEAYTALLHSYARSKMTDKAERLFERMKDADLSIDVLVYN 208
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKH 324
++ Y++ KV + + +K V PD TY L + A S +L + I E+ K
Sbjct: 209 EMMTLYISVGELDKVPAVAEELKRQNVSPDLFTYNLRISASAASMDLEIFKGILDEMSKD 268
Query: 325 HVDGKEFPLIRAMICAYSKCS--VTDRIKKIEALMRLIPEKEYRPWLNV-LLIRVYAKED 381
+ + L R + Y S V+ +EA ++ R W+ LI ++
Sbjct: 269 PNSNEGWTLYRNLATIYVNASQLVSSGNSLVEAEAKI----SQREWITYDFLILLHTGLG 324
Query: 382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN 417
LE + K I + + + T R C++SSY C
Sbjct: 325 NLERV-KDIWKSMQMTSQRMTSRNYICVLSSYLMCG 359
>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
Length = 1007
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 120/310 (38%), Gaps = 19/310 (6%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT 192
R + A VLN R +T E KG G L + + H + T
Sbjct: 405 RIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG--HSANLVT 462
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN ++ Y +G + + DL ++ P +Y LI F ++ ++ F E+
Sbjct: 463 YNTIIKGYCDSGNTTSALRIL-DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEM 521
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
D L PN TY LI GY + + MK P+ TY +L+ G N
Sbjct: 522 VDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNF 581
Query: 313 PRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
E EL K ++ FP + AMI K T +E ++I E+ P
Sbjct: 582 SGAE---ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSL--ALEMFNKMI-EQGCLP-- 633
Query: 370 NVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
N+L LIR +E +EE E + H + ++ ++ +Y V+ NF
Sbjct: 634 NLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVK-MIEAYIMSGKVEHAFNF 692
Query: 426 VKRAESAGWR 435
+ R AG +
Sbjct: 693 LGRMIKAGCQ 702
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 125/320 (39%), Gaps = 19/320 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA--AF 249
TYNAL+ + N K + +L SP+IVTYN +I G +L D +A
Sbjct: 392 TYNALINILVEN-RRIKYAFVVLNLMGRNGCSPNIVTYNEMIK--GYCILGDPKKAMLVM 448
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ S N+ TYN +I GY + I +M+ G PD +Y L+ G+
Sbjct: 449 NNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFC-- 506
Query: 310 GNLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
+ +ME + L VD P A+I Y K +++ +L+ + R
Sbjct: 507 -KISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCK---DEKLDTATSLLEHMKRSGCR 562
Query: 367 PWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
P + +LI K++ E+ E V I + L
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQR-RVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
F K E L L +S ++ Q +VEE E++ E+E + + + T+ M AY
Sbjct: 623 FNKMIEQGC--LPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAY 680
Query: 484 ATCGQRRKVNQVLGLMCKNG 503
G+ LG M K G
Sbjct: 681 IMSGKVEHAFNFLGRMIKAG 700
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLF 213
+KE + + F ++ L LFA +A HL +G A++ Y + LS+ Q
Sbjct: 157 SKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRY-HRMLSEGVQ--- 212
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
P+++ YN +I+ + V E +++ +S +SP+ FTY +I G+
Sbjct: 213 ----------PNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCR 262
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
+++ M P+T TY L+ G SG R+ + ++L++ +
Sbjct: 263 KHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSG---RVNEAFDLIREMI 312
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 2/142 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I R +++D A +F + A + + TY+ L+ +G ++ L R++
Sbjct: 253 YTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI 312
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
I P+ T I + + F ++K+ PNV+TY LI+G + +
Sbjct: 313 LHG-ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLL 371
Query: 278 GKVEEIYQMMKAGPVMPDTNTY 299
++ M V P+T TY
Sbjct: 372 KVAIGLFHRMSRDGVFPNTVTY 393
>gi|15226656|ref|NP_179197.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75267579|sp|Q9XIM8.1|PP155_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g15980
gi|5306237|gb|AAD41970.1| hypothetical protein [Arabidopsis thaliana]
gi|330251359|gb|AEC06453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 498
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 152/342 (44%), Gaps = 59/342 (17%)
Query: 17 LQRLQRHSSKPKTLPPLSVFTLTKSPNHS-----FTR--DLCAPATHTVFPTLVRLLSET 69
L+ LQ P +++ L +P+ S FTR LC+ TH+ TL+ +LS +
Sbjct: 61 LRSLQPSGFTPSQFSEITL-CLRNNPHLSLRFFLFTRRYSLCSHDTHSC-STLIHILSRS 118
Query: 70 LTYPDARVRKDLTQTVS-ALRDELLANVDDLD---KVFRVLDEK---------------G 110
R++ ++ + ALR L A +D D KVFR L +
Sbjct: 119 ------RLKSHASEIIRLALR--LAATDEDEDRVLKVFRSLIKSYNRCGSAPFVFDLLIK 170
Query: 111 SCLFRRHSNGYAFVELMKQLGSRP---------RLALEVLNWRRRQAGYGTPMTKEEYTK 161
SCL + +G V M++L SR L EV RRR A G M +E +
Sbjct: 171 SCLDSKEIDGAVMV--MRKLRSRGINAQISTCNALITEV--SRRRGASNGYKMYREVF-- 224
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
G+ D++ D + K T+N+++ ++ G ++ + ++R++++E
Sbjct: 225 GLD--------DVSVDEAKKMIGKIKPNATTFNSMMVSFYREGETEMVERIWREMEEEVG 276
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
SP++ +YN L+ + L+ E ++E+K + ++ YN +I G + + K +
Sbjct: 277 CSPNVYSYNVLMEAYCARGLMSEAEKVWEEMKVRGVVYDIVAYNTMIGGLCSNFEVVKAK 336
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
E+++ M + TY L+ GY +G++ +Y +K
Sbjct: 337 ELFRDMGLKGIECTCLTYEHLVNGYCKAGDVDSGLVVYREMK 378
>gi|255660900|gb|ACU25619.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 481
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT I+ + R+ ++ E F E
Sbjct: 152 TFNVMIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTXINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ TY LL G N
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDXALRLVEEMKGFGIKPNAITYSTLLPGLC---N 267
Query: 312 LPRMEKIYELVKHHVD 327
+M + ++K +D
Sbjct: 268 AEKMSEARVILKEMMD 283
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 6/153 (3%)
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G +G+ V+ A F + ++ + + TYN + Y ++ + F ++K
Sbjct: 159 GFFLSGK---VETANRFFEDMKSREISPDVVTYNTXINGYYRVKKMEEAEKYFVEMKGR- 214
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
NI P++VTY TLI + + VD +E+K + PN TY+ L+ G A +
Sbjct: 215 NIEPTVVTYTTLIKGYVSVDQVDXALRLVEEMKGFGIKPNAITYSTLLPGLCNAEKMSEA 274
Query: 281 EEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNL 312
I + M + P D + ++ L+ + SGNL
Sbjct: 275 RVILKEMMDKYLAPTDNSIFMRLISSHCXSGNL 307
>gi|147791423|emb|CAN76850.1| hypothetical protein VITISV_005998 [Vitis vinifera]
Length = 340
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 4/157 (2%)
Query: 167 GRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G+ + A LF E + +T+ ++NALL + + DK F++L + P
Sbjct: 64 GKAGMFEHAHKLFDEXPKLNCERTVVSFNALLSVCVXSKKFDKIDGFFQELPGNLGVVPD 123
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+V+YN +++ F + +D + E++ L P++ T+N L+ + + E+I+
Sbjct: 124 VVSYNIIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWD 183
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
+MK V P+ +Y LRG RM + EL+
Sbjct: 184 LMKKNNVAPNVRSYNAKLRGVISEN---RMSEAVELI 217
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 5/145 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN ++ A+ G D S+ +++K + P ++T+NTL++ F + E +
Sbjct: 126 SYNIIVNAFCEMGSLDSALSVLDEMEK-VGLEPDLITFNTLLNAFYQNGSYADGEKIWDL 184
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K +N++PNV +YN + G ++ + E+ MK + PD T L++G+ ++GN
Sbjct: 185 MKKNNVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGN 244
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRA 336
L ++ Y + + E P +RA
Sbjct: 245 LEEAKRWYSEIARN----ELPPVRA 265
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT-LISVFGRLLLVDHMEAAFQ 250
T+N LL A+ NG + ++ DL K+ N++P++ +YN L V + + +E
Sbjct: 161 TFNTLLNAFYQNGSYADGEKIW-DLMKKNNVAPNVRSYNAKLRGVISENRMSEAVEL-ID 218
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+K S + P+VFT N L+ G+ A + + Y + + P TY+ L+ G
Sbjct: 219 EMKTSGIKPDVFTLNSLMKGFCNAGNLEEAKRWYSEIARNELPPVRATYMTLIPFLVEKG 278
Query: 311 NL 312
+
Sbjct: 279 DF 280
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ Y G+ + LF + K N ++V++N L+SV D ++ FQE+ +
Sbjct: 59 LMTLYGKAGMFEHAHKLFDEXPK-LNCERTVVSFNALLSVCVXSKKFDKIDGFFQELPGN 117
Query: 256 -NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ P+V +YN ++ + + M+ + PD T+ LL + +G+
Sbjct: 118 LGVVPDVVSYNIIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYAD 177
Query: 315 MEKIYELVKHH 325
EKI++L+K +
Sbjct: 178 GEKIWDLMKKN 188
>gi|111154024|dbj|BAF02664.1| pentatricopeptide repeat protein [Physcomitrella patens]
gi|111185880|dbj|BAF02672.1| pentatricopeptide repeat protein [Physcomitrella patens]
Length = 531
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/318 (20%), Positives = 130/318 (40%), Gaps = 8/318 (2%)
Query: 184 NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
+ L ++ YN+ L + +G ++F+ + A + P +V+Y LI FG+L +
Sbjct: 139 DSQLNSVKDYNSALLNCVKDGRMRDAMTIFKRFEG-AGLKPDVVSYTALIQGFGKLKSYN 197
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
+ F ++ + P++ LI+ Y + E Q +A + PD Y L+
Sbjct: 198 KVTDVFSRMQRNRCPPDLKLCTVLISTYGNGGLPVLAESAMQYAQAQGLQPDAIAYTALV 257
Query: 304 RGYAHSGNLPRMEKIYE--LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIP 361
YA G EK L VD + + A++ AY K +TD + KI M+
Sbjct: 258 HAYAQEGLWEEAEKTLSDMLDVGIVDDRPYA---ALVAAYGKAGLTDNVNKILETMKASG 314
Query: 362 EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
+ N LI +++K + E+ +++ + ++ +Y R
Sbjct: 315 VEASTTLYNT-LINIHSKAEAPEK-ARAVLQLMQADGCQCDEITYTSVMEAYSRNKQPLM 372
Query: 422 LANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYY 481
+ + + AG + Y + Y R+ + E +L+ M+N K + + + +M
Sbjct: 373 AESMMGEMKRAGIQPGPVSYGVLISAYCRAGRLGDAERILRAMQNAKCKPTVEIYNMMIS 432
Query: 482 AYATCGQRRKVNQVLGLM 499
YA+ R + ++ M
Sbjct: 433 GYASAKMRSQAERMFQTM 450
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY +++ AY N +S+ ++K+ A I P V+Y LIS + R + E +
Sbjct: 356 TYTSVMEAYSRNKQPLMAESMMGEMKR-AGIQPGPVSYGVLISAYCRAGRLGDAERILRA 414
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++++ P V YN +I+GY +A M + E ++Q M+ + PD T+ L+ Y S
Sbjct: 415 MQNAKCKPTVEIYNMMISGYASAKMRSQAERMFQTMQDCGLRPDAVTFNTLISMYIKSRK 474
Query: 312 LPRMEKIY 319
+ E Y
Sbjct: 475 RKQAEDCY 482
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 178 LFAEAANKHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
L AE+ +K G +Y L+ AY G + + R ++ A P++ YN
Sbjct: 371 LMAESMMGEMKRAGIQPGPVSYGVLISAYCRAGRLGDAERILRAMQN-AKCKPTVEIYNM 429
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
+IS + + E FQ ++D L P+ T+N LI+ Y+ + + E+ Y M+
Sbjct: 430 MISGYASAKMRSQAERMFQTMQDCGLRPDAVTFNTLISMYIKSRKRKQAEDCYIRMQQLG 489
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKI 318
P+ TY +LL+ Y N E+I
Sbjct: 490 CKPNAVTYKILLKAYTDYNNSIDAERI 516
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/331 (20%), Positives = 122/331 (36%), Gaps = 47/331 (14%)
Query: 192 TYNALLGAY----MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+Y AL+ + YN ++D +F +++ P + LIS +G L E+
Sbjct: 182 SYTALIQGFGKLKSYNKVTD----VFSRMQRN-RCPPDLKLCTVLISTYGNGGLPVLAES 236
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGY 306
A Q + L P+ Y L+ Y +W + E+ + M+ G V D Y L+ Y
Sbjct: 237 AMQYAQAQGLQPDAIAYTALVHAYAQEGLWEEAEKTLSDMLDVGIV--DDRPYAALVAAY 294
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR-------- 358
+G + KI E +K L +I +SK ++ + + LM+
Sbjct: 295 GKAGLTDNVNKILETMKASGVEASTTLYNTLINIHSKAEAPEKARAVLQLMQADGCQCDE 354
Query: 359 ----------------LIPEK----------EYRPWLNVLLIRVYAKEDCLEEMEKSIND 392
L+ E + P +LI Y + L + E+ I
Sbjct: 355 ITYTSVMEAYSRNKQPLMAESMMGEMKRAGIQPGPVSYGVLISAYCRAGRLGDAER-ILR 413
Query: 393 AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452
A ++ TV I ++S Y + + + G R +++ + MY R
Sbjct: 414 AMQNAKCKPTVEIYNMMISGYASAKMRSQAERMFQTMQDCGLRPDAVTFNTLISMYIKSR 473
Query: 453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
+ ++ E M+ + T+ I+ AY
Sbjct: 474 KRKQAEDCYIRMQQLGCKPNAVTYKILLKAY 504
>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
Length = 698
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 71/141 (50%), Gaps = 7/141 (4%)
Query: 180 AEAANKHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
AEA + +K G YN LLG Y G + ++ + L ++ +S + +TY LI
Sbjct: 301 AEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTV-KTLLRDTGMSINKITYCLLI 359
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ R L+D +EA +QE++D ++ PN + Y +I Y W K ++ + M+ V
Sbjct: 360 DAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVT 419
Query: 294 PDTNTYLLLLRGYAHSGNLPR 314
PD + Y +++ + + L +
Sbjct: 420 PDAHVYNVIINTFGRTRQLEQ 440
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 97/253 (38%), Gaps = 53/253 (20%)
Query: 122 AFVELMKQLGSRPRLA-----LEVLNWRRRQAGYGTPMTKEEYT---KGIKFAGRINNVD 173
+++ LM LG R A LE + W YG + Y G G++ +D
Sbjct: 284 SYISLMLSLGKHGRTAEAEALLEEMKW------YGLRPNLKAYNTLLGGYSRKGQLQQID 337
Query: 174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK---------------- 217
L + K TY L+ AY GL D+ ++L+++++
Sbjct: 338 TVKTLLRDTGMSINKI--TYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMIT 395
Query: 218 ------------------KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
++A ++P YN +I+ FGR ++ AF +++D + P
Sbjct: 396 IYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEP 455
Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+V ++N LI A + ++Y M P T+ +++ G G R +
Sbjct: 456 DVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGL---GEHKRWNDVN 512
Query: 320 ELVKHHVDGKEFP 332
E+V+ FP
Sbjct: 513 EMVEEMRSKGMFP 525
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 15/227 (6%)
Query: 99 LDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEE 158
L K V ++ GS L RR N A V Q + ALE L+ + G P
Sbjct: 160 LHKALEVAEKLGSNLQRRGYN--ALVGAYAQNRDYGK-ALETLS---KMKTLGFPPDVVS 213
Query: 159 YTKGIKFAGRINNVDLAAD--LFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQS--LF 213
YT I+ A R VD+ LF E + ++ G YN L+ A G + K F
Sbjct: 214 YTHVIQ-ACRHGVVDIYTGFRLFQEMQAEGVQVDGKVYNDLIFAC---GQAHKPNEGMFF 269
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+ + + + +Y +L+ G+ EA +E+K L PN+ YN L+ GY
Sbjct: 270 LEKLQASGLVADRDSYISLMLSLGKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSR 329
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+++ + +++ + + TY LL+ YA +G + R+E +Y+
Sbjct: 330 KGQLQQIDTVKTLLRDTGMSINKITYCLLIDAYARAGLMDRLEALYQ 376
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
++N+L+ A G + + L+ + + +P+ T+N +I G + + +E
Sbjct: 459 SWNSLIDACCKAGQPLEARKLYYKMVNDG-CAPTAQTFNIVIHGLGEHKRWNDVNEMVEE 517
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
++ + PNV TY L+ Y A ++ E Q MK + P Y L YA G
Sbjct: 518 MRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSALANAYAQLG 576
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 72/347 (20%), Positives = 135/347 (38%), Gaps = 18/347 (5%)
Query: 130 LGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT 189
+ R A E+L W R + T + I GR + A ++ AE +L+
Sbjct: 120 VSGRSSFASELLEWLRENSFCRTYDVLDSVV--IHGYGRERKLHKALEV-AEKLGSNLQR 176
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA-- 247
G YNAL+GAY N K +K P +V+Y +I R +VD
Sbjct: 177 RG-YNALVGAYAQNRDYGKALETLSKMKT-LGFPPDVVSYTHVIQAC-RHGVVDIYTGFR 233
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
FQE++ + + YN LI A + + ++A ++ D ++Y+ L+
Sbjct: 234 LFQEMQAEGVQVDGKVYNDLIFACGQAHKPNEGMFFLEKLQASGLVADRDSYISLMLSLG 293
Query: 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR----LIPEK 363
G E + E +K + ++ YS+ +I ++ L+R I +
Sbjct: 294 KHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSINKI 353
Query: 364 EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLA 423
Y LLI YA+ ++ +E + + T R +++ Y K
Sbjct: 354 TY-----CLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYAR-MITIYRDTGQWQKGV 407
Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID 470
++ + AG +Y+ + + R++E+ +M++ I+
Sbjct: 408 KLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIE 454
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y+AL AY G+ ++ + + ++KE NI ++ N LI+ F A F+
Sbjct: 564 AYSALANAYAQLGMCEQTLHVLQTMEKE-NIEINLAMLNLLINAFSMAGRSQEAFAVFEY 622
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPD 295
IK++ L+ + TY L+ + A +V ++ +M+KAG PD
Sbjct: 623 IKEAGLTADKITYTTLMKALIRAEKLDEVSGVFDEMIKAG-CRPD 666
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 44/101 (43%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P++VTY TL+ V+ + L Q +K+ + P+ Y+ L Y M + +
Sbjct: 525 PNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSALANAYAQLGMCEQTLHV 584
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
Q M+ + + LL+ ++ +G ++E +K
Sbjct: 585 LQTMEKENIEINLAMLNLLINAFSMAGRSQEAFAVFEYIKE 625
>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
Length = 786
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 131/311 (42%), Gaps = 15/311 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ AY G D+ +LF +KK + P++ TYN ++ + G+ M E
Sbjct: 351 TYNTVMTAYGNIGKVDEALALFDQMKKSGCV-PNVNTYNFILGMLGKKSRFTVMLEMLGE 409
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ S +PN T+N ++A M V + + MK+ V +TY L+ Y G+
Sbjct: 410 MSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGS 469
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WL 369
K+Y + A++ S+ + I + MR K ++P
Sbjct: 470 RTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMR---TKGFKPNDQS 526
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV----RIMRCIVSSYFRCNAVDKLANF 425
LL++ YAK + + DA E + TV I+R +V + F+C + +
Sbjct: 527 YSLLLQCYAKGGNIAGI-----DAIEKEVYGGTVFPSWVILRTLVIANFKCRRLGGIEKA 581
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
+ ++ G+ +++S + MYA ++ + ++ + T+ + YA
Sbjct: 582 FQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAK 641
Query: 486 CGQRRKVNQVL 496
C + + ++L
Sbjct: 642 CSESWEAEKIL 652
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/312 (19%), Positives = 130/312 (41%), Gaps = 19/312 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T + ++ A +GL D+ + F DLK + +P +VTYN L+ VFG+ +E
Sbjct: 246 TASTVIAACCRDGLVDEAVAFFEDLKARGH-TPCVVTYNALLQVFGKAGNYTEALRVLKE 304
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ P+ TYN L Y A + + + M + ++P+ TY ++ Y + G
Sbjct: 305 MEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGK 364
Query: 312 LPRMEKIYELVKHH---VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ +++ +K + + I M+ S+ +V ++ + + R W
Sbjct: 365 VDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVM--LEMLGEMSRSGCTPNRVTW 422
Query: 369 LNVLLIRVYAKEDCLEE-MEKSINDAFEHKTSVTTVRIMR----CIVSSYFRCNAVDKLA 423
+L + C + ME + E S V + R ++++Y RC +
Sbjct: 423 NTMLAV-------CGKRGMEDYVTRVLEGMKSC-GVELSRDTYNTLIAAYGRCGSRTNAF 474
Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
SAG+ C + Y++ + + + Q +S++ +M + +++ ++ Y
Sbjct: 475 KMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCY 534
Query: 484 ATCGQRRKVNQV 495
A G ++ +
Sbjct: 535 AKGGNIAGIDAI 546
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/329 (22%), Positives = 131/329 (39%), Gaps = 52/329 (15%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N +L G+ D + +K + S TYNTLI+ +GR + + E
Sbjct: 421 TWNTMLAVCGKRGMEDYVTRVLEGMKS-CGVELSRDTYNTLIAAYGRCGSRTNAFKMYNE 479
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + +P + TYN L+ W + I M+ P+ +Y LLL+ YA GN
Sbjct: 480 MTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGN 539
Query: 312 LPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ ++ I K G FP ++R ++ A KC R+ IE + + + Y P
Sbjct: 540 IAGIDAIE---KEVYGGTVFPSWVILRTLVIANFKCR---RLGGIEKAFQEVKARGYNPD 593
Query: 369 LNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA---VDKLA 423
L + ++ +YAK ++ + I D+ + + ++ Y +C+ +K+
Sbjct: 594 LVIFNSMLSMYAKNGMYSKVTE-IFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKIL 652
Query: 424 NFVKRAE--------------------------------SAGWRLCRSLYHSKMVMYASQ 451
N +K ++ + G C YH+ + YAS
Sbjct: 653 NQLKSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASL 712
Query: 452 RRVEEMESVLKEMENYKIDCSKKTFWIMY 480
EM S +E+ NY I + K + Y
Sbjct: 713 ----EMFSEAREVINYMIQHNLKPMELTY 737
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 1/161 (0%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G+ + YT + R + A +LFAE + + T+ TYN +L Y G S
Sbjct: 168 GSRLDVRAYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPR 227
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
D + A + P T +T+I+ R LVD A F+++K +P V TYN L+
Sbjct: 228 IVALLDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQ 287
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ A + + + + M+ PD TY L YA +G
Sbjct: 288 VFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAG 328
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 75/348 (21%), Positives = 138/348 (39%), Gaps = 13/348 (3%)
Query: 100 DKVFRVLDEKGSCLFRRHSNGY-AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEE 158
D V RVL+ SC + Y + + GSR A ++ N AG+ +T
Sbjct: 436 DYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGSRTN-AFKMYN-EMTSAGFAPCLTT-- 491
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y + R + A + ++ K K +Y+ LL Y G ++ +++
Sbjct: 492 YNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNDQSYSLLLQCYAKGGNIAGIDAIEKEVY 551
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ PS V TL+ + + +E AFQE+K +P++ +N +++ Y M+
Sbjct: 552 G-GTVFPSWVILRTLVIANFKCRRLGGIEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMY 610
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
KV EI+ +K + PD TY L+ YA EKI +K + +
Sbjct: 611 SKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTV 670
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFE 395
I + K + IK+ + ++ + P + L+ YA + E + IN +
Sbjct: 671 INGFCKQGL---IKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFSEAREVINYMIQ 727
Query: 396 HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
H + R +V SY + ++ +F+ + + H+
Sbjct: 728 HNLKPMELTYRR-VVDSYCKAKRFEEARSFLSEVSETDPNFDKKVLHT 774
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/316 (17%), Positives = 131/316 (41%), Gaps = 10/316 (3%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV-DHMEAAFQE 251
Y +L A G ++ LF +L+++ ++P++VTYN ++ V+GR+ + A E
Sbjct: 176 YTTVLHALSRAGRYERAVELFAELRRQG-VAPTLVTYNVVLDVYGRMGRSWPRIVALLDE 234
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + + P+ FT + +IA + + ++ +KA P TY LL+ + +GN
Sbjct: 235 MRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAGN 294
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR---LIPEKEYRPW 368
++ + ++ + + Y++ + K M L+P +
Sbjct: 295 YTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNA----F 350
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
++ Y ++E ++ D + V V I+ + + + +
Sbjct: 351 TYNTVMTAYGNIGKVDE-ALALFDQMKKSGCVPNVNTYNFILGMLGKKSRFTVMLEMLGE 409
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+G R +++ + + + + + VL+ M++ ++ S+ T+ + AY CG
Sbjct: 410 MSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIAAYGRCGS 469
Query: 489 RRKVNQVLGLMCKNGY 504
R ++ M G+
Sbjct: 470 RTNAFKMYNEMTSAGF 485
>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 143/349 (40%), Gaps = 25/349 (7%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT IK + N A F K L I Y+A++ + NG + + +F
Sbjct: 594 YTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFL 653
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K + P + YN+LIS F + ++ + E+ + ++PN+ YN LI G
Sbjct: 654 K-TGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEV 712
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHV--DGKEFPLI 334
K E++ ++ ++PD TY ++ GY SGNL K++ E++ + DG
Sbjct: 713 TKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDG------ 766
Query: 335 RAMICAYSKCSVTDRIKK---IEALMRLIPEKEYRPWLNV----LLIRVYAKEDCLEEME 387
Y C + D K +E + L E + + ++ LI + K + E
Sbjct: 767 ------YIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEAR 820
Query: 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVM 447
+ +D + K + V ++ +Y + +++ E+ Y S ++
Sbjct: 821 ELFDDMVDKKLTPNIVT-YTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLS 879
Query: 448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
Y +M S+ K+ME I C + +M AY G+ + ++L
Sbjct: 880 YNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLL 928
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY AL+ ++ G ++ + +D + ++VTYN +I + + + F E
Sbjct: 348 TYTALIDGFIKEGNIEEALRI-KDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNE 406
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + L P+ +TYN LI GY+ + K E+ MKA + P TY +L+ G HS +
Sbjct: 407 MLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSD 466
Query: 312 LPRMEKIY-ELVKHHVDGKEF---PLIRAMI 338
L + ++ +++++ V F LI+A +
Sbjct: 467 LQKANEVLDQMIRNGVKPNVFMYGTLIKAYV 497
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 7/164 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218
YT IK ++ +V + +E + + TYNA +G G D+ + + L
Sbjct: 245 YTNVIKAHCKVGDVIKGKMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEV-KKLMM 303
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E + P TY L+ F + + F+ + S L+PN FTY LI G++ G
Sbjct: 304 EKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKE---G 360
Query: 279 KVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+EE I M + + TY ++ G A +G + + ++
Sbjct: 361 NIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLF 404
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 16/127 (12%)
Query: 209 CQSLFRDLKK---------------EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
C +L RDL K EA I P + TY +I ++ V + E+
Sbjct: 210 CNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM- 268
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
+ PN+FTYN I G + E+ ++M + PD +TY LL+ G+
Sbjct: 269 EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSK 328
Query: 314 RMEKIYE 320
+ I+E
Sbjct: 329 EAKLIFE 335
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ A+ G K + + +++KE P++ TYN I + VD +
Sbjct: 244 TYTNVIKAHCKVGDVIKGKMVLSEMEKEC--KPNLFTYNAFIGGLCQTGAVDEALEVKKL 301
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + L P+ TY L+ G+ + + I++ M + + P+ TY L+ G+ GN
Sbjct: 302 MMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGN 361
Query: 312 LPRMEKI 318
+ +I
Sbjct: 362 IEEALRI 368
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 68/161 (42%), Gaps = 4/161 (2%)
Query: 154 MTKEEYTKGIKFAGRINNVDL--AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQ 210
+T +T + +G ++ DL A ++ + +K + Y L+ AY+ +
Sbjct: 447 LTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAI 506
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
L + + + P + YN LI R V+ + ++ + + PN TY I
Sbjct: 507 ELLKIMIANG-VLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINL 565
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
Y + E ++ M + ++P+ Y +L++G+ GN
Sbjct: 566 YSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGN 606
>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 711
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 114/259 (44%), Gaps = 13/259 (5%)
Query: 175 AADLF-AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
AA++F + AA H I TY LL Y G S F +K + ++ +V + LI
Sbjct: 240 AAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLV-FTILI 298
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM-TAWMWGKVEEIYQMMKAGPV 292
+ + ++D E++ LSP+VFTY+ LI+ + V++ QM+ G V
Sbjct: 299 DAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTG-V 357
Query: 293 MPDTNTYLLLLRGYAHSGNLPRM-EKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351
P+T Y L++G+ G+L + E +YE++ + + +++ +S C R+
Sbjct: 358 QPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIV--HSICK-EGRVM 414
Query: 352 KIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL-EEMEK--SINDAFEHKTSVTTVRIMRC 408
+ L+ + R ++++ CL EM K S+ DA
Sbjct: 415 DAHHIFDLVKDIGERS--DIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNT 472
Query: 409 IVSSYFRCNAVDKLANFVK 427
+V+ YF+ +D N +
Sbjct: 473 LVNGYFKSGRIDDGLNLFR 491
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/247 (21%), Positives = 99/247 (40%), Gaps = 39/247 (15%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ + G K +L+ ++ ++ + P +VT+N++I+ + VD+ E ++
Sbjct: 118 TYNTVIHGFFKEGKIGKACNLYHEMMQQGFV-PDVVTHNSIINALCKARAVDNAELLLRQ 176
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD---------------- 295
+ D+ + PN TY +I GY T W + ++++ M ++PD
Sbjct: 177 MVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGR 236
Query: 296 -------------------TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336
TY +LL GYA G M + +K +
Sbjct: 237 SKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTI 296
Query: 337 MICAYSKCSVTDRIKKIEALMR---LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA 393
+I AY+K + D I + M+ L P+ L L R+ D +++ + I
Sbjct: 297 LIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTG 356
Query: 394 FEHKTSV 400
+ T V
Sbjct: 357 VQPNTVV 363
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/309 (20%), Positives = 116/309 (37%), Gaps = 7/309 (2%)
Query: 206 SDKCQSLFRDLKKEANI-SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264
S + L R + KE + SP +VTYNT+I F + + + E+ P+V T+
Sbjct: 95 SQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTH 154
Query: 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
N +I A E + + M V P+ TY ++ GY+ L R E+ ++ +
Sbjct: 155 NSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYS---TLGRWEEATKMFRE 211
Query: 325 HVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDC 382
P I + R K+ + + K +RP + +L+ YA E C
Sbjct: 212 MTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGC 271
Query: 383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYH 442
+M N + V + ++ +Y + +D+ + + G Y
Sbjct: 272 FADMMSFFN-TMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYS 330
Query: 443 SKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502
+ + R+ + +M + + + + + T G K +++ M N
Sbjct: 331 TLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNN 390
Query: 503 GYDVPVNAF 511
G P AF
Sbjct: 391 GIPRPNIAF 399
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 98/231 (42%), Gaps = 18/231 (7%)
Query: 96 VDDLDKVFRVLDEKGS----CLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYG 151
V D +F ++ + G +F +GY V M + A VL+ AG G
Sbjct: 413 VMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGK-------AFSVLDAMI-SAGIG 464
Query: 152 -TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
T G +GRI++ +LF E ++K +K T TYN +L G +
Sbjct: 465 PDTFTYNTLVNGYFKSGRIDD---GLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAA 521
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
Q + ++ + S+ TYN ++ R D FQ++ N+ N+ T N +I
Sbjct: 522 QKMLHEMIG-CGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMIN 580
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
T + ++++ + ++P+ +TY +++R G++ + ++
Sbjct: 581 SMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFS 631
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 10/154 (6%)
Query: 175 AADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
A +L E N + I +N+++ + G +F DL K+ I+ +NTL
Sbjct: 380 AKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIF-DLVKDIGERSDIIMFNTL 438
Query: 233 ISVFGRLLLVDHMEAAFQEIK---DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
I + LV M AF + + + P+ FTYN L+ GY + +++ M
Sbjct: 439 IDGY---CLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSD 495
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEK-IYELV 322
+ P T TY ++L G +G +K ++E++
Sbjct: 496 KKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMI 529
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 3/139 (2%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
GR+ + DL + + I +N L+ Y G K S+ D A I P
Sbjct: 411 GRVMDAHHIFDLVKDIGER--SDIIMFNTLIDGYCLVGEMGKAFSVL-DAMISAGIGPDT 467
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TYNTL++ + + +D F+E+ D + P TYN ++ G A +++
Sbjct: 468 FTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHE 527
Query: 287 MKAGPVMPDTNTYLLLLRG 305
M TY ++L+G
Sbjct: 528 MIGCGTTVSLPTYNIILKG 546
>gi|224090111|ref|XP_002308939.1| predicted protein [Populus trichocarpa]
gi|222854915|gb|EEE92462.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 4/167 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+ +++ Y NG + C+++F + E + P+IV+YNTL+ + + + F
Sbjct: 314 TFTSIIHLYSVNGQIENCRAVFSTMVAEG-LKPNIVSYNTLMGAYASHGMNKEALSVFNA 372
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
IK+S L P+V +Y L+ Y + K E+++MMK + P+ +Y ++ Y +G
Sbjct: 373 IKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMIDAYGSNGL 432
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
L E + L + DG +P ++ + C R I+ +++
Sbjct: 433 LA--EAVEVLREMEQDGI-YPNAVSICTLLAACGRCSRKVNIDVVLQ 476
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 2/148 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT + GR A ++F LK I +YNA++ AY NGL + + R+++
Sbjct: 385 YTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREME 444
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ I P+ V+ TL++ GR +++ Q + ++ N YN I YM +
Sbjct: 445 QDG-IYPNAVSICTLLAACGRCSRKVNIDVVLQAAERRHIKLNTIAYNSAIGSYMNVGEF 503
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
K +Y+ M+ V+PD T+ +L+ G
Sbjct: 504 EKATSMYRSMRKSKVIPDAVTFTVLISG 531
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 67/127 (52%), Gaps = 2/127 (1%)
Query: 178 LFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
+F+ + LK I +YN L+GAY +G++ + S+F +K + + P +V+Y +L++ +
Sbjct: 334 VFSTMVAEGLKPNIVSYNTLMGAYASHGMNKEALSVFNAIKN-SGLRPDVVSYTSLLNSY 392
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
GR F+ +K L PN+ +YN +I Y + + + E+ + M+ + P+
Sbjct: 393 GRSQQPKKAREVFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREMEQDGIYPNA 452
Query: 297 NTYLLLL 303
+ LL
Sbjct: 453 VSICTLL 459
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 99/220 (45%), Gaps = 39/220 (17%)
Query: 171 NVDLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
N+D+ + A +H+K TI YN+ +G+YM G +K S++R ++K + + P VT
Sbjct: 470 NIDV---VLQAAERRHIKLNTIA-YNSAIGSYMNVGEFEKATSMYRSMRK-SKVIPDAVT 524
Query: 229 YNTLISVFGRL--------LLVDHM-------------------EAAFQEIKDSNLSPNV 261
+ LIS ++ L + M E+ F ++K + SP+V
Sbjct: 525 FTVLISGCCKMTKYCEALEFLSEMMDLKIPMTKEAYSSGKITEAESMFNKMKMAGCSPDV 584
Query: 262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321
TY ++ Y A W K + Q M+ + PDT L+R + G+ ++ + E
Sbjct: 585 VTYTMMLHAYNAAEHWKKACALLQEMEEYNIQPDTIACSALMRAFNKGGDPSKVLILAEF 644
Query: 322 VKHHVDGKEFPLIRAMICA-YSKCSVTDRIKKIEALMRLI 360
++ KE PL A+ S CS+ + L++L+
Sbjct: 645 MRE----KEIPLSDAIFFEMVSACSLLRDWRTTIELIKLM 680
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 1/140 (0%)
Query: 204 GLSDKCQSLFRDLK-KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF 262
G +K +F+ ++ K A P +VT+ ++I ++ +++ A F + L PN+
Sbjct: 289 GQYEKAIGIFKSMREKRAECHPDVVTFTSIIHLYSVNGQIENCRAVFSTMVAEGLKPNIV 348
Query: 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
+YN L+ Y + M + ++ +K + PD +Y LL Y S + +++E++
Sbjct: 349 SYNTLMGAYASHGMNKEALSVFNAIKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMM 408
Query: 323 KHHVDGKEFPLIRAMICAYS 342
K AMI AY
Sbjct: 409 KRDKLKPNIVSYNAMIDAYG 428
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/386 (21%), Positives = 162/386 (41%), Gaps = 24/386 (6%)
Query: 123 FVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
F L+K++ + + ++ V W + Q Y + Y I+ R N D A LF
Sbjct: 102 FPLLIKEITQKGSIEHSILVFRWMKNQRNYCA--RTDIYNMMIRLHARHNWTDQARGLFF 159
Query: 181 EAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
E K T NAL+ A+ +G ++ D+ ++A I PS TYN LI+ G
Sbjct: 160 EMQKWRCKPDAETCNALINAHGRSGQWRWAMNIMEDMLQKA-IPPSRSTYNNLINACGSS 218
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
+++ ++ + P++ T+N +++ Y T + K +++MK + PDT T
Sbjct: 219 GNWREALKLCKKMTENGVGPDLVTHNIILSAYKTGAQYAKALSYFELMKGTNIRPDTTTL 278
Query: 300 LLLLRGYAHSGNLPRMEKIYELVKH-----HVDGKEFPLIRAMICAYSKCSVTDRIKKIE 354
+++ G + I++ ++ H D F ++I YS V +I+
Sbjct: 279 NIIIYCLTKLGQYEKAIGIFKSMREKRAECHPDVVTFT---SIIHLYS---VNGQIENCR 332
Query: 355 ALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV 410
A+ + + +P N++ L+ YA +E S+ +A ++ V ++
Sbjct: 333 AVFSTMVAEGLKP--NIVSYNTLMGAYASHGMNKE-ALSVFNAIKNSGLRPDVVSYTSLL 389
Query: 411 SSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID 470
+SY R K + + + Y++ + Y S + E VL+EME I
Sbjct: 390 NSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREMEQDGIY 449
Query: 471 CSKKTFWIMYYAYATCGQRRKVNQVL 496
+ + + A C ++ ++ VL
Sbjct: 450 PNAVSICTLLAACGRCSRKVNIDVVL 475
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 69/322 (21%), Positives = 122/322 (37%), Gaps = 33/322 (10%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+FR +K + N YN +I + R D F E++ P+ T N LI +
Sbjct: 121 VFRWMKNQRNYCARTDIYNMMIRLHARHNWTDQARGLFFEMQKWRCKPDAETCNALINAH 180
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
+ W I + M + P +TY L+ SGN K+ + + + G +
Sbjct: 181 GRSGQWRWAMNIMEDMLQKAIPPSRSTYNNLINACGSSGNWREALKLCKKMTENGVGPDL 240
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM---EK 388
++ AY + + K + L+ RP L I +Y CL ++ EK
Sbjct: 241 VTHNIILSAYKTGA---QYAKALSYFELMKGTNIRPDTTTLNIIIY----CLTKLGQYEK 293
Query: 389 SIN--------DAFEHKTSVTTVRIMR--CIVSSYFRCNAVDKLANFVKRAESAGWRLCR 438
+I A H VT I+ + C AV + V + G +
Sbjct: 294 AIGIFKSMREKRAECHPDVVTFTSIIHLYSVNGQIENCRAV--FSTMV----AEGLKPNI 347
Query: 439 SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL 498
Y++ M YAS +E SV ++N + ++ + +Y Q +K +V +
Sbjct: 348 VSYNTLMGAYASHGMNKEALSVFNAIKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEM 407
Query: 499 MCKN-------GYDVPVNAFPS 513
M ++ Y+ ++A+ S
Sbjct: 408 MKRDKLKPNIVSYNAMIDAYGS 429
>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
Length = 757
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 35/171 (20%)
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
+P++VTY T+I + +VD + FQ + D + PN TY LI GY++ W +V +
Sbjct: 199 TPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQ 258
Query: 283 IYQMMKAGPVMPD-----------------------------------TNTYLLLLRGYA 307
+ Q M + PD Y +LL GYA
Sbjct: 259 MLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYA 318
Query: 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
G+L M +L+ + + + M CAY+K ++ D I MR
Sbjct: 319 TEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMR 369
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N + AY + D+ +F D ++ +SP+IVTY LI +L VD F ++
Sbjct: 345 FNIMFCAYAKKAMIDEAMHIF-DKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQM 403
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
D ++P++F ++ L+ G T W K EE++ + + DT + L+ G +
Sbjct: 404 IDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLCREGRV 463
Query: 313 PRMEKIYELV 322
+++ +L+
Sbjct: 464 MEAQRLIDLM 473
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 107/253 (42%), Gaps = 19/253 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN L+ + G D+ L D+ + P VTYNTL+ + + +D + F+E
Sbjct: 484 SYNTLVDGHCLTGRIDEAAKLL-DVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFRE 542
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ L+P+V TYN ++ G + + +E+Y M + TY +++ G +
Sbjct: 543 MLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNF 602
Query: 312 LPRMEKIYELVKHHVDGKEFPL--------IRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
+ K++ H + K+ L I A++ K D I A L+P+
Sbjct: 603 VDEAFKMF----HSLCSKDLQLDIFTANIMIGALLKGGRKEDAMDLFATISA-YGLVPDV 657
Query: 364 EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLA 423
E + LI KE LEE+++ + A E + R++ +V +++
Sbjct: 658 ETYCLIAENLI----KEGSLEELDE-LFSAMEENGTAPNSRMLNALVRWLLHRGDINRAG 712
Query: 424 NFVKRAESAGWRL 436
++ + + + L
Sbjct: 713 AYLSKLDEKNFSL 725
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 14/181 (7%)
Query: 219 EANISPSIVTYNTLISVF---GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
E +P + +Y+ L+ F R + + + D + +PNV TY +I G A
Sbjct: 157 EFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGSHTPNVVTYTTVIDGLCKAQ 216
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHV--DGKEFP 332
M + + ++Q M V P+ +TY L+ GY G ++ + E+ H + D +
Sbjct: 217 MVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYA 276
Query: 333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSI 390
++ +C +C+ I ++++R K +P + + +L+ YA E L EM +
Sbjct: 277 VLLDYLCKNGRCTEARNI--FDSVIR----KGIKPNVTIYGILLHGYATEGSLSEMHSFL 330
Query: 391 N 391
+
Sbjct: 331 D 331
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 114/285 (40%), Gaps = 17/285 (5%)
Query: 211 SLFRDLKKEANI--SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN-VFTYNYL 267
SLF + +E +I +PS TY LI F R+ + H AAF I + N ++ L
Sbjct: 75 SLFNRMIRECSIKVAPSSFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQL 134
Query: 268 IAGYMTAWMWGKVEEI-YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
+ G A + +I + M PD +Y +LL+G+ + ++ ++
Sbjct: 135 LKGLCDAKRVDEATDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDG 194
Query: 327 DGKEFPLI---RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKED 381
DG P + +I K + DR K + + + +K RP LI Y
Sbjct: 195 DGSHTPNVVTYTTVIDGLCKAQMVDRAKGV---FQHMIDKGVRPNNHTYTCLIHGYLSIG 251
Query: 382 CLEEMEKSINDAFEH--KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
+E+ + + + H + ++ + RC + + V R G + +
Sbjct: 252 KWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIR---KGIKPNVT 308
Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
+Y + YA++ + EM S L M + F IM+ AYA
Sbjct: 309 IYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYA 353
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 62/298 (20%), Positives = 115/298 (38%), Gaps = 53/298 (17%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A ++F K +K + Y LL Y G + S F DL +SP +N +
Sbjct: 291 ARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHS-FLDLMVGNGVSPDHHIFNIMF 349
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE----IYQMMKA 289
+ + ++D F +++ LSPN+ TY LI G+V++ QM+
Sbjct: 350 CAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCK---LGRVDDAVLKFNQMIDE 406
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKI-YELVKHHV--DGKEFPLIRAMICAYSKCSV 346
G + PD + L+ G + E++ +E++ + D F + +C
Sbjct: 407 G-MTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCNLC------- 458
Query: 347 TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIM 406
R ++ RLI L++RV + D + S T+
Sbjct: 459 --REGRVMEAQRLID----------LMLRVGVRPDVI---------------SYNTLVDG 491
Query: 407 RCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
C+ +D+ A + S G + + Y++ + Y RR+++ S+ +EM
Sbjct: 492 HCLTGR------IDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREM 543
>gi|449525162|ref|XP_004169587.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g73710-like [Cucumis sativus]
Length = 1026
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 121/292 (41%), Gaps = 12/292 (4%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN ++ AY L +K LF+ +K P TYN+LI +F LVD E+
Sbjct: 534 YNVMIKAYGKAELYEKAFLLFKSMKNRGTW-PDECTYNSLIQMFSGGDLVDEARRLLTEM 592
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ P T++ +IA Y + E+Y MM V P+ Y +L+ G+A G
Sbjct: 593 QRMGFKPTCQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEIGQA 652
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL 372
K + L++ + ++ ++I A+SK + ++I M+ + + N
Sbjct: 653 EEALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGADTIASNS- 711
Query: 373 LIRVYAKEDCLEEMEKSIND----AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+I +YA + E ++ D + S T ++ Y +D+ +
Sbjct: 712 MINLYADLGMVSEAKQVFEDLRERGYADGVSFAT------MIYLYKNIGMLDEAIEVAEE 765
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480
+ +G + + + YA +V E +L EM K+ +TF +++
Sbjct: 766 MKESGLLRDATSFRKVIECYAINGQVRECGELLHEMVTRKLLPDNRTFNVLF 817
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/357 (19%), Positives = 152/357 (42%), Gaps = 14/357 (3%)
Query: 153 PMTKEEYTKGIKFAGRINNVDLAADLFAE--AANKHLKTIGTYNALLGAYMYNGLSDKCQ 210
P Y I G+ + AA++F E + TI T+N ++ +G + +
Sbjct: 318 PRLTSTYNTLIDLYGKAGRLKDAANVFGEMLTTGISMDTI-TFNTMIYTCGSHGHLAEAE 376
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+L ++ E +SP TYN +S++ +D ++ I++ L P+V T+ L+
Sbjct: 377 TLLLKME-ERGLSPDTKTYNIFLSLYANDGNIDGALKCYRRIREVGLFPDVVTHRALLHV 435
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
M VE + M+ ++ D ++ +++ Y + G L R + + E K+ +D +
Sbjct: 436 LSERNMVEDVENVIAEMEKSHILLDEHSLPRVIKMYINEGLLDRAKILLE--KYRLDTEL 493
Query: 331 FPLIR-AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE---M 386
P I A+I AY++ + + I R + K+ ++I+ Y K + E+ +
Sbjct: 494 SPRISAAIIDAYAEKGLWFEAESIFLWKRDLAGKKXDVMEYNVMIKAYGKAELYEKAFLL 553
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446
KS+ + T ++ + + VD+ + + G++ + + +
Sbjct: 554 FKSMKNRGTWPDECT----YNSLIQMFSGGDLVDEARRLLTEMQRMGFKPTCQTFSAVIA 609
Query: 447 MYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
YA + + V M + ++ ++ + ++ +A GQ + + LM K+G
Sbjct: 610 SYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEIGQAEEALKYFRLMEKSG 666
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 199 AYMYNGLSDKCQSLFR-DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
A +++GL +L D +A + YN I +G +D F ++KD NL
Sbjct: 850 AAVFSGLGLHASALESCDTFLKAEVQLDSFAYNVAIYAYGAAEKIDKALNIFMKMKDQNL 909
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
P++ TY L+ Y A M V++IY +K G + + + + ++ + + ++
Sbjct: 910 KPDLVTYINLVGCYGKAGMIEGVKQIYSQLKYGEIELNKSLFFAIINTFRSADRYDLVQM 969
Query: 318 IYELVKHHVDGK 329
+ + +K +D +
Sbjct: 970 VKQEMKFSLDSE 981
>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 621
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/334 (20%), Positives = 140/334 (41%), Gaps = 12/334 (3%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
N +T+ L+ A + G + Q++F +L +E + P+++TY TL++ R
Sbjct: 53 GNNSCQTVHARTKLMNALIGKGKPHEAQAVFHNLTEEGH-KPTLITYTTLVAALTRQKRF 111
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTY 299
+ A ++ D+ + P+ N +I + + GKV+E I+Q MK P T+TY
Sbjct: 112 KSIPALLSKVADNGMKPDSILLNAMINAFSDS---GKVDEAMKIFQKMKEYGCKPTTSTY 168
Query: 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359
L++G+ G K+ E++ + K P R ++++ ++
Sbjct: 169 NTLIKGFGIVGRPYESMKLLEMMGQDENVK--PNDRTYNILIQAWCTKKKLEEAWNVLHK 226
Query: 360 IPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN 417
+ +P + + R YA+ E+ E+ I ++ R I+S Y +
Sbjct: 227 MVASGIQPDVVTYNTMARAYAQNGETEKAERLI-LKMQYNKVKPNERTCGIIISGYCKEG 285
Query: 418 AVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW 477
+ + F+ R + G +++S + Y ++ L ME + I TF
Sbjct: 286 NMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFS 345
Query: 478 IMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
+ A+++ G ++ M K G + ++A+
Sbjct: 346 TIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIHAY 379
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 63/335 (18%), Positives = 131/335 (39%), Gaps = 7/335 (2%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
VD A +F + K T TYN L+ + G + L + ++ N+ P+ TYN
Sbjct: 146 VDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKLLEMMGQDENVKPNDRTYN 205
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
LI + ++ ++ S + P+V TYN + Y K E + M+
Sbjct: 206 ILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERLILKMQYN 265
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI 350
V P+ T +++ GY GN+ + +K + ++I Y + T+ +
Sbjct: 266 KVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLDATDTNGV 325
Query: 351 KKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC 408
EAL L+ E +P + ++ ++ ++ E+ ND + +
Sbjct: 326 D--EALT-LMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIE-PDIHAYSI 381
Query: 409 IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK 468
+ Y R K + + G + ++ + + + + +++ S+ ++M
Sbjct: 382 LAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEMG 441
Query: 469 IDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ KT+ + + Y Q K ++L M + G
Sbjct: 442 TSPNLKTYETLIWGYGEAKQPWKAEEILSTMEERG 476
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 88/236 (37%), Gaps = 55/236 (23%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C + F+ MK+LG P P+ KG A
Sbjct: 280 GYCKEGNMTEALRFLYRMKELGVHP-----------------NPVVFNSLIKGYLDATDT 322
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
N VD A L E K + T++ ++ A+ GL D C+ +F D+ K A I P I Y
Sbjct: 323 NGVDEALTLMEEFGIK--PDVVTFSTIMNAWSSAGLMDNCEEIFNDMVK-AGIEPDIHAY 379
Query: 230 NTL----------------------------ISVFGRLL----LVDHMEAAF---QEIKD 254
+ L + +F ++ M+ AF +++ +
Sbjct: 380 SILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHE 439
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
SPN+ TY LI GY A K EEI M+ V+P+ +T L+ + G
Sbjct: 440 MGTSPNLKTYETLIWGYGEAKQPWKAEEILSTMEERGVVPEMSTMQLVADAWRAIG 495
>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
Length = 762
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 91/429 (21%), Positives = 173/429 (40%), Gaps = 26/429 (6%)
Query: 97 DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPM 154
D +D V R + E SC+ + ++ L+K L +R + ALE+L+ G G+
Sbjct: 140 DAMDIVLRRMTEL-SCM----PDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAP 194
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLF 213
YT I + + D A + E ++ + + TY++++ A DK +
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVL 254
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+ K + P+ +TYN+++ + ++++ + P+V TYN L+
Sbjct: 255 TTMVKNG-VMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCK 313
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
+ +I+ M + PD TY LL+GYA G L M + +L+ + + +
Sbjct: 314 NGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHV 373
Query: 334 IRAMICAYSKCSVTDRIKKIEALMR---LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI 390
+ICAY+K D + + MR L P + +L + + +D + E+ I
Sbjct: 374 FNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMI 433
Query: 391 NDAFEHKTSVTTVRIMR-CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYA 449
++ V T I CI + DK + G L ++S + +
Sbjct: 434 DEGLTPNIIVYTSLIHSLCIFDKW------DKAEELILEMLDRGICLNTIFFNSIIHSHC 487
Query: 450 SQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG------ 503
+ RV E E + M + + T+ + Y G+ + ++L M G
Sbjct: 488 KEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCV 547
Query: 504 -YDVPVNAF 511
Y+ +N +
Sbjct: 548 TYNTLINGY 556
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ Y G D+ L + + P VTYNTLI+ + R+ +D A F+E
Sbjct: 513 TYSTLIDGYCLAGKMDEATKLLSSMFS-VGMKPDCVTYNTLINGYCRVSRMDDALALFKE 571
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ S +SPN+ TYN ++ G +E+Y + + +TY ++L G
Sbjct: 572 MVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHG 625
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 2/144 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R++ +D A LF E + + I TYN +L + + + L+ + K +
Sbjct: 558 RVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGT-QLEL 616
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TYN ++ + L D FQ + ++L T+N +I + + ++++
Sbjct: 617 STYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAA 676
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSG 310
+ A ++PD TY L+ G
Sbjct: 677 LSANGLVPDVRTYSLMAENLIEQG 700
>gi|449447783|ref|XP_004141647.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g73710-like [Cucumis sativus]
Length = 1020
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/292 (22%), Positives = 121/292 (41%), Gaps = 12/292 (4%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN ++ AY L +K LF+ +K P TYN+LI +F LVD E+
Sbjct: 534 YNVMIKAYGKAELYEKAFLLFKSMKNRGTW-PDECTYNSLIQMFSGGDLVDEARRLLTEM 592
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ P T++ +IA Y + E+Y MM V P+ Y +L+ G+A G
Sbjct: 593 QRMGFKPTCQTFSAVIASYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEIGQA 652
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL 372
K + L++ + ++ ++I A+SK + ++I M+ + + N
Sbjct: 653 EEALKYFRLMEKSGIAENQIVLTSLIKAFSKVGSLEDARRIYNRMKNMEDGADTIASNS- 711
Query: 373 LIRVYAKEDCLEEMEKSIND----AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+I +YA + E ++ D + S T ++ Y +D+ +
Sbjct: 712 MINLYADLGMVSEAKQVFEDLRERGYADGVSFAT------MIYLYKNIGMLDEAIEVAEE 765
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480
+ +G + + + YA +V E +L EM K+ +TF +++
Sbjct: 766 MKESGLLRDATSFRKVIECYAINGQVRECGELLHEMVTRKLLPDNRTFNVLF 817
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/357 (19%), Positives = 152/357 (42%), Gaps = 14/357 (3%)
Query: 153 PMTKEEYTKGIKFAGRINNVDLAADLFAE--AANKHLKTIGTYNALLGAYMYNGLSDKCQ 210
P Y I G+ + AA++F E + TI T+N ++ +G + +
Sbjct: 318 PRLTSTYNTLIDLYGKAGRLKDAANVFGEMLTTGISMDTI-TFNTMIYTCGSHGHLAEAE 376
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+L ++ E +SP TYN +S++ +D ++ I++ L P+V T+ L+
Sbjct: 377 TLLLKME-ERGLSPDTKTYNIFLSLYANNGNIDGALKCYRRIREVGLFPDVVTHRALLHV 435
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
M VE + M+ ++ D ++ +++ Y + G L R + + E K+ +D +
Sbjct: 436 LSERNMVEDVENVIAEMEKSHILLDEHSLPRVIKMYINEGLLDRAKILLE--KYRLDTEL 493
Query: 331 FPLIR-AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE---M 386
P I A+I AY++ + + I R + K+ ++I+ Y K + E+ +
Sbjct: 494 SPRISAAIIDAYAEKGLWFEAESIFLWKRDLSGKKMDVMEYNVMIKAYGKAELYEKAFLL 553
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446
KS+ + T ++ + + VD+ + + G++ + + +
Sbjct: 554 FKSMKNRGTWPDECT----YNSLIQMFSGGDLVDEARRLLTEMQRMGFKPTCQTFSAVIA 609
Query: 447 MYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
YA + + V M + ++ ++ + ++ +A GQ + + LM K+G
Sbjct: 610 SYARLGLMSDAVEVYDMMVHADVEPNEILYGVLVNGFAEIGQAEEALKYFRLMEKSG 666
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 199 AYMYNGLSDKCQSLFR-DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
A +++GL +L D +A + YN I +G +D F ++KD NL
Sbjct: 850 AAVFSGLGLHASALESCDTFLKAEVQLDSFAYNVAIYAYGAAEKIDKALNIFMKMKDQNL 909
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY--AHSGNLPRM 315
P++ TY L+ Y A M V++IY +K G + + + + ++ + AH +L +M
Sbjct: 910 KPDLVTYINLVGCYGKAGMIEGVKQIYSQLKYGEIELNKSLFFAIINTFRSAHRYDLVQM 969
Query: 316 EK 317
K
Sbjct: 970 VK 971
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN + AY DK ++F +K + N+ P +VTY L+ +G+ +++ ++ + ++
Sbjct: 881 YNVAIYAYGAAEKIDKALNIFMKMKDQ-NLKPDLVTYINLVGCYGKAGMIEGVKQIYSQL 939
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
K + N + +I + +A + V+ + Q MK
Sbjct: 940 KYGEIELNKSLFFAIINTFRSAHRYDLVQMVKQEMK 975
>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 537
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 1/186 (0%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT 192
R LA E ++ R YG + ++ I R A F ++ +
Sbjct: 198 RAGLASEAVHCFNRMEDYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIV 257
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y L+ + G + + +F+D+K A I P++ TY+ +I R + F ++
Sbjct: 258 YTNLVRGWCRAGEISEAEKVFKDMKL-AGIEPNVYTYSIVIDALCRCGQISRAHDVFADM 316
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
DS +PN T+N L+ ++ A KV ++Y MK PDT TY L+ + NL
Sbjct: 317 LDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLIETHCRDENL 376
Query: 313 PRMEKI 318
K+
Sbjct: 377 ENAVKV 382
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/357 (18%), Positives = 146/357 (40%), Gaps = 14/357 (3%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
+L NW + Y + Y + I AG++ DLA L +++++ +I T+
Sbjct: 133 SLAFFNWATSRDDYDQK-SPHPYNEMIDLAGKVRQFDLAWHLIDLMKSRNVEISIETFTI 191
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ Y+ GL+ + F ++ + P + ++ +IS R ++ F +KD
Sbjct: 192 LIRRYVRAGLASEAVHCFNRMEDYGCV-PDQIAFSIVISNLSRKRRASEAQSFFDSLKD- 249
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
P+V Y L+ G+ A + E++++ MK + P+ TY +++ G + R
Sbjct: 250 RFEPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQISRA 309
Query: 316 EKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIR 375
++ + ++ + K +++ ++ M+ + + N LI
Sbjct: 310 HDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYN-FLIE 368
Query: 376 VYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES---- 431
+ +++ LE K +N + K V ++ FR + N R S
Sbjct: 369 THCRDENLENAVKVLNTMIKKKCEVNA-----STFNTIFRYIEKKRDVNGAHRMYSKMME 423
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
A Y+ M M+A + + + + K+M++ +++ + T+ ++ + G
Sbjct: 424 AKCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPNVNTYRLLVTMFCGMGH 480
>gi|356517946|ref|XP_003527646.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Glycine max]
Length = 511
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/273 (24%), Positives = 120/273 (43%), Gaps = 37/273 (13%)
Query: 159 YTKGIKFAG--RINNVDLAADLFAEAANKHLKTIG------TYNALLGAYMYNGLSDKCQ 210
YT I G R+ +D A L K L++ G TYN L+ D+ +
Sbjct: 178 YTVNILIRGLCRVGEIDEAFKLL-----KDLRSFGCLPDVITYNTLIHGLCLINEVDRAR 232
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
SL R++ +P +V+Y +IS + +L ++ F E+ +S +PN FT+N LI G
Sbjct: 233 SLLREVCLNGEFAPDVVSYTMIISGYCKLRKMEEGSLLFDEMINSGTAPNTFTFNALIDG 292
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK--HHVDG 328
+ +Y M +PD T+ L+ G+ R+ ++++ + H ++
Sbjct: 293 FGKLGDMASALALYSKMLVQGCLPDVATFTSLINGHF------RVRQVHQAMDMWHKMNE 346
Query: 329 KEFPLIRAMICAYSK-----CSVTDRIKKIEALMRLIPEKEY--RPWLNVLLIRVYAKED 381
K I A + YS C+ +R+ K ++RL+ E + +P++ +I Y K
Sbjct: 347 KN---IGASLYTYSVLVSGLCN-NNRLHKARDILRLLNESDIVPQPFIYNPVIDGYCKSG 402
Query: 382 CLEEMEK-----SINDAFEHKTSVTTVRIMRCI 409
++E K +N K + T + I C+
Sbjct: 403 NVDEANKIVAEMEVNRCKPDKLTFTILIIGHCM 435
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 72/171 (42%), Gaps = 2/171 (1%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKC 209
GT + I G++ ++ A L+++ L + T+ +L+ + +
Sbjct: 278 GTAPNTFTFNALIDGFGKLGDMASALALYSKMLVQGCLPDVATFTSLINGHFRVRQVHQA 337
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
++ + E NI S+ TY+ L+S + + + +S++ P F YN +I
Sbjct: 338 MDMWHKMN-EKNIGASLYTYSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYNPVID 396
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
GY + + +I M+ PD T+ +L+ G+ G +P ++
Sbjct: 397 GYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAIGFFD 447
>gi|378734263|gb|EHY60722.1| minichromosome maintenance protein 3 [Exophiala dermatitidis
NIH/UT8656]
Length = 1346
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 83/166 (50%), Gaps = 5/166 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y +L A G D Q++F +L K + I + L+ + RL ++ E FQ
Sbjct: 515 SYQKVLTALAAQGDVDGTQAVFIELCKVHSRPTDIAYFTPLLYAYARLGDIEGTEREFQR 574
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+KD L P ++ +N L+ Y + GK +I++ MKA + PD T+ L+ + +G+
Sbjct: 575 LKDWGLQPTLYCWNILLYAYARSAHSGKAFDIFETMKAQGLRPDVYTFGTLMGIVSKAGD 634
Query: 312 LPRMEKIYELV-KHHVDGKEFPLIRAMICAY---SKCSVTDRIKKI 353
+ + I E ++H+ G + +I ++ +Y + V +R+ ++
Sbjct: 635 IEAVVDIIEQAQQYHIKGS-YEMISGLVQSYCLNDQADVAERLAEV 679
>gi|359496222|ref|XP_002263756.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g13150-like [Vitis vinifera]
Length = 379
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 3/135 (2%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+T+ ++NALL + + DK F++L + P +V+YN +++ F + +D +
Sbjct: 125 RTVVSFNALLSVCVNSKKFDKIDGFFQELPGNLGVVPDVVSYNIIVNAFCEMGSLDSALS 184
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
E++ L P++ T+N L+ + + E+I+ +MK V P+ +Y LRG
Sbjct: 185 VLDEMEKVGLEPDLITFNTLLNAFYQNGSYADGEKIWDLMKKNNVAPNVRSYNAKLRGVI 244
Query: 308 HSGNLPRMEKIYELV 322
RM + EL+
Sbjct: 245 SEN---RMSEAVELI 256
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 5/145 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN ++ A+ G D S+ +++K + P ++T+NTL++ F + E +
Sbjct: 165 SYNIIVNAFCEMGSLDSALSVLDEMEK-VGLEPDLITFNTLLNAFYQNGSYADGEKIWDL 223
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K +N++PNV +YN + G ++ + E+ MK + PD T L++G+ ++GN
Sbjct: 224 MKKNNVAPNVRSYNAKLRGVISENRMSEAVELIDEMKTSGIKPDVFTLNSLMKGFCNAGN 283
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRA 336
L ++ Y + + E P +RA
Sbjct: 284 LEEAKRWYSEIARN----ELPPVRA 304
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT-LISVFGRLLLVDHMEAAFQ 250
T+N LL A+ NG + ++ DL K+ N++P++ +YN L V + + +E
Sbjct: 200 TFNTLLNAFYQNGSYADGEKIW-DLMKKNNVAPNVRSYNAKLRGVISENRMSEAVEL-ID 257
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+K S + P+VFT N L+ G+ A + + Y + + P TY+ L+ G
Sbjct: 258 EMKTSGIKPDVFTLNSLMKGFCNAGNLEEAKRWYSEIARNELPPVRATYMTLIPFLVEKG 317
Query: 311 NL 312
+
Sbjct: 318 DF 319
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ Y G+ + LF +L K N ++V++N L+SV D ++ FQE+ +
Sbjct: 98 LMTLYGKAGMFEHAHKLFDELPK-LNCERTVVSFNALLSVCVNSKKFDKIDGFFQELPGN 156
Query: 256 -NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ P+V +YN ++ + + M+ + PD T+ LL + +G+
Sbjct: 157 LGVVPDVVSYNIIVNAFCEMGSLDSALSVLDEMEKVGLEPDLITFNTLLNAFYQNGSYAD 216
Query: 315 MEKIYELVKHH 325
EKI++L+K +
Sbjct: 217 GEKIWDLMKKN 227
>gi|449507908|ref|XP_004163164.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 685
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 2/147 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I GR+ V A ++F E + K I +YN+L+ NG D+ F +++
Sbjct: 514 YNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQ 573
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ ++P +VTY+TLI FG+ V+ + F + PN+ TYN L+ A
Sbjct: 574 -DKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRT 632
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLR 304
+ ++Y ++ + PD+ TY +L R
Sbjct: 633 AETVDLYAKLREQGLTPDSITYAILDR 659
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 2/161 (1%)
Query: 168 RINNVDLAADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R + D A +++ E +N + I YN LL A + D+ +F+D+K + + +P
Sbjct: 246 RSRDSDRAFNVYMEMWSNGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLK-HCNPDE 304
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TY +I + G++ + A F+E+ +PN+ YN +I + M K ++
Sbjct: 305 YTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCN 364
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
M P+ TY ++L G L R++++ E+ ++
Sbjct: 365 MIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFIN 405
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E IS + YNT++S G+L V H+ ++++K P++FTYN LI+
Sbjct: 469 EKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVK 528
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ E+++ +++ PD +Y L+ +G++
Sbjct: 529 EAVEVFEELESSDCKPDIISYNSLINCLGKNGDV 562
>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 6/216 (2%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
+K+ R ++D A ++ E N + TY+ L+ NG + LF ++ +
Sbjct: 280 VKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGRLKEAFELFEEMVSKD 339
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
I P +TYN LI+ F R D + +K++ PNVF Y+ L+ G A
Sbjct: 340 QIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDA 399
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKH--HVDGKEFPLIRAM 337
+ + MK+ + PD TY L+ ++ +G + +E + E+ ++ D F +I
Sbjct: 400 KGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMKENDCQADTVTFNVILGG 459
Query: 338 ICAYSKCS-VTDRIKKIEALMRLIPEKEYRPWLNVL 372
+C + D I+K+ + + YR LN L
Sbjct: 460 LCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSL 495
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 3/146 (2%)
Query: 170 NNVDLAADL--FAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
N VDL L +A+ + + + +N L+ + G D + ++++ P+++
Sbjct: 251 NQVDLVRKLLLYAKRSLVYKPNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVI 310
Query: 228 TYNTLISVFGRLLLVDHMEAAFQE-IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TY+TL+ R + F+E + + P+ TYN LI G+ + + +
Sbjct: 311 TYSTLMDGLCRNGRLKEAFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEF 370
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNL 312
MK P+ Y L+ G +G L
Sbjct: 371 MKNNGCCPNVFNYSALVDGLCKAGKL 396
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 46/226 (20%)
Query: 137 ALEVL-NWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH--LKTIGTY 193
A EV+ R + Y +T G+ GR+ A +LF E +K + TY
Sbjct: 292 AFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGRLKE---AFELFEEMVSKDQIVPDPLTY 348
Query: 194 NALLGAYMYNGLSDK-------------CQSLF---------------RDLK------KE 219
N L+ + G +D+ C ++F +D K K
Sbjct: 349 NVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKS 408
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
+ + P +TY +LI+ F R +D E+K+++ + T+N ++ G G+
Sbjct: 409 SGLKPDAITYTSLINFFSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGLCRE---GR 465
Query: 280 VEEIYQMMKAGP---VMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
+E M++ P V + +Y ++L + L + K+ L+
Sbjct: 466 FDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQNCELRKANKLLGLM 511
>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
Length = 845
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%), Gaps = 2/181 (1%)
Query: 131 GSRPRLALEVLNWRRRQA-GYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT 189
G P LA+E+ R A +P T Y I R++ DL + L
Sbjct: 150 GDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGP 209
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+L+ ++ +G DK LF ++ E + P I+ N++I ++ +D E+
Sbjct: 210 DDFSYSLIYGFVKDGEVDKAHCLFLEMM-EQGVLPKILICNSIIKELCKMKEMDKAESIV 268
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
Q++ DS ++P++FTY+ +I G + K E + + M P++ TY L+ GY+ S
Sbjct: 269 QKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSIS 328
Query: 310 G 310
G
Sbjct: 329 G 329
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 74/167 (44%), Gaps = 6/167 (3%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH-LKTIG 191
RP L L ++ R + G G G G VD A LF E + L I
Sbjct: 191 RPDLGLAIVG-RLLKNGLGPDDFSYSLIYGFVKDGE---VDKAHCLFLEMMEQGVLPKIL 246
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
N+++ DK +S+ + + ++ I+P + TY+ +I + +D E ++
Sbjct: 247 ICNSIIKELCKMKEMDKAESIVQKMV-DSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQ 305
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298
+ ++ PN TYN LI GY + MW + +++ M + V+P +
Sbjct: 306 MVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDN 352
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 59/332 (17%), Positives = 129/332 (38%), Gaps = 13/332 (3%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS--VFGRLLLVDH 244
+ T+ N+ + A +G +++ + +F + + P I++Y+T S + + +V
Sbjct: 347 IPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGP-KPDIISYSTNASWVCYWYVTVVWV 405
Query: 245 M-EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
M F + ++PN +N LI Y M K I++ M+ ++PDT T+ ++
Sbjct: 406 MWHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 465
Query: 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
G R++ H VD P C C + K + L+ + K
Sbjct: 466 SSLCRIG---RLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNK 522
Query: 364 EYRP----WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
+ P + + +I KE + E K I D V ++ Y +
Sbjct: 523 DIPPPGVKYFSS-IINNLCKEGRVAE-GKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNM 580
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
++ + S G +Y + + Y R+++ +V ++M + + + + I+
Sbjct: 581 EEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSII 640
Query: 480 YYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
+ + ++ M ++G V ++ +
Sbjct: 641 LHGLFQARRTTAAKKMFHEMIESGTTVSIHTY 672
>gi|449479641|ref|XP_004155661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g55890,
mitochondrial-like [Cucumis sativus]
Length = 398
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 91/191 (47%), Gaps = 3/191 (1%)
Query: 116 RHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLA 175
RH G F ++ L R + +L + + Q Y + T+ IK G+ A
Sbjct: 71 RHKKG-TFDSTVRLLAVRKKFSL-IEDIIEAQKKYEDIKVEGFATRLIKLYGKAGMFSHA 128
Query: 176 ADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234
LF E + +T+ ++N+LL + + + D+ + +FR++ +E +I +++YN +I+
Sbjct: 129 RKLFDELPELNCERTVKSFNSLLASCVKSKEFDQVEKIFREVPQEVSIKADVISYNIVIN 188
Query: 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294
F + +D F +++ + + PN+ T+N L+ + E ++ M+ + P
Sbjct: 189 AFCEMDALDKAILFFHDMEKNGMEPNLVTFNTLLTALYRKGQFFDGERVWATMENKNIAP 248
Query: 295 DTNTYLLLLRG 305
D +Y LRG
Sbjct: 249 DLVSYNARLRG 259
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL---LVDHMEAA 248
T+N LL A G + ++ ++ + NI+P +V+YN + G +L + D +E
Sbjct: 217 TFNTLLTALYRKGQFFDGERVWATMENK-NIAPDLVSYNARLR--GMVLEKRIQDGIEL- 272
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
++++ + P+V++YN LI G+ + ++ Y +K V P TY +LL
Sbjct: 273 LAKMEEKEIKPDVYSYNILIKGFCQDGDLEEAKKWYYKLKESEVDPIATTYRILLPLLCE 332
Query: 309 SGNL 312
G+
Sbjct: 333 QGDF 336
>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
Length = 578
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 137/338 (40%), Gaps = 20/338 (5%)
Query: 178 LFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
L E+ +H + + NALL + D + FR + +SP I T+NT+IS
Sbjct: 144 LAGESHPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRR-RVSPDIYTFNTVISGLC 202
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI----YQMMKAGPVM 293
R+ + ++IK L+P+V TYN LI GY G + + +M++AG +
Sbjct: 203 RIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAG-IS 261
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P T+ +L+ GY + N +++E +K ++I CS K+
Sbjct: 262 PTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGL--CSE----GKV 315
Query: 354 EALMRLIPEKE---YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTT---VRIMR 407
E ++L+ E E P N + K C + M ND + T V I
Sbjct: 316 EEGVKLMEEMEDLGLSP--NEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYN 373
Query: 408 CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467
++ Y R ++ + G + Y+ + ++ +L EM+
Sbjct: 374 ILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEK 433
Query: 468 KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
I+ T+ ++ A G+ RK ++L M + G +
Sbjct: 434 GIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLE 471
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 19/192 (9%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L+ Y G + ++ + K+ ISP++ TYN LI+ F R E+
Sbjct: 372 YNILIDVYRRLGKMEDAMAVKEAMAKKG-ISPNVTTYNCLITGFSRSGDWRSASGLLDEM 430
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
K+ + +V TYN LI K ++ M + P+ TY +++G+ GN+
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNI 490
Query: 313 -------PRMEKIYE---LVKHHVDGKEFPLIRAMICA-------YSKCSVTDRIKKIEA 355
RMEK + +V ++V K F I M A KC V + I E
Sbjct: 491 KSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGI-TYET 549
Query: 356 LMRLIPEKEYRP 367
+ + EK Y P
Sbjct: 550 IKEGMMEKGYTP 561
>gi|449465242|ref|XP_004150337.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Cucumis sativus]
Length = 690
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 2/147 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I GR+ V A ++F E + K I +YN+L+ NG D+ F +++
Sbjct: 519 YNILISSLGRVGKVKEAVEVFEELESSDCKPDIISYNSLINCLGKNGDVDEAHMRFLEMQ 578
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ ++P +VTY+TLI FG+ V+ + F + PN+ TYN L+ A
Sbjct: 579 -DKGLNPDVVTYSTLIECFGKTDKVEMARSLFDRMITQGCCPNIVTYNILLDCLERAGRT 637
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLR 304
+ ++Y ++ + PD+ TY +L R
Sbjct: 638 AETVDLYAKLREQGLTPDSITYAILDR 664
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 2/161 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R + D A +++ E +K + I YN LL A + D+ +F+D+K + + +P
Sbjct: 251 RSRDSDRAFNVYMEMWSKGYQLDIFAYNMLLDALAKDEQLDRSYKVFKDMKLK-HCNPDE 309
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TY +I + G++ + A F+E+ +PN+ YN +I + M K ++
Sbjct: 310 YTYTIMIRMTGKMGRAEESLALFEEMLTKGCTPNLIAYNTMIQALSKSGMVDKAILLFCN 369
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
M P+ TY ++L G L R++++ E+ ++
Sbjct: 370 MIKNNCRPNEFTYSIILNVLVAEGQLGRLDEVLEVSNKFIN 410
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 49/94 (52%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E IS + YNT++S G+L V H+ ++++K P++FTYN LI+
Sbjct: 474 EKGISTDTMMYNTVLSTLGKLKQVSHLHDLYEKMKQDGPFPDIFTYNILISSLGRVGKVK 533
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ E+++ +++ PD +Y L+ +G++
Sbjct: 534 EAVEVFEELESSDCKPDIISYNSLINCLGKNGDV 567
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 133/306 (43%), Gaps = 15/306 (4%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ TYN ++ G + + LF ++ E +SP +VTYN+LI +G++ ++ + +
Sbjct: 288 SVFTYNVMIDYLCKEGDLENSRRLFVQMR-EMGLSPDVVTYNSLIDGYGKVGSLEEVASL 346
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F E+KD P++ TYN LI Y + E + MK + P+ TY L+ +
Sbjct: 347 FNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCK 406
Query: 309 SGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL---IPEKE 364
G + K++ ++ + + EF + ++T+ K + +++ +
Sbjct: 407 EGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVT 466
Query: 365 YRPWLNVLLI--RVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
Y L+ L R+ E+ M K D V T +V Y + ++
Sbjct: 467 YTALLDGLCKAGRMIEAEEVFRSMLK---DGISPNQQVYTA-----LVHGYIKAERMEDA 518
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482
+K+ + LY S + + SQR++EE + +L+EM++ I + + A
Sbjct: 519 MKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDA 578
Query: 483 YATCGQ 488
Y G+
Sbjct: 579 YFKAGK 584
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 129/305 (42%), Gaps = 21/305 (6%)
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
N LL +G + F D+ A I+PS+ TYN +I + +++ F +++
Sbjct: 258 NFLLHRLSKSGNGQLVRKFFNDMIG-AGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMR 316
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
+ LSP+V TYN LI GY +V ++ MK +PD TY L+ Y +P
Sbjct: 317 EMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMP 376
Query: 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR---LIPEKEYRPWLN 370
R + + +K++ +I A+ K + K+ MR L+P + +
Sbjct: 377 RAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNE----FTY 432
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTS---VTTVRIMRCIVSSYFRCNAVDKLANFVK 427
LI K L E K +ND + VT ++ + + A + + +K
Sbjct: 433 TSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLK 492
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA--YAT 485
S ++ +L H Y R+E+ +LK+M +C+ K I+Y + +
Sbjct: 493 DGISPNQQVYTALVHG----YIKAERMEDAMKILKQMT----ECNIKPDLILYGSIIWGH 544
Query: 486 CGQRR 490
C QR+
Sbjct: 545 CSQRK 549
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 12/195 (6%)
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
++ AY G S + F++++ + + +IVTY LI + +V+ F +
Sbjct: 575 IIDAYFKAGKSSDALNFFQEMQ-DVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSL 633
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
L PNV Y LI G ++++ M+ + PD + L+ G GNL
Sbjct: 634 GLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNL--Q 691
Query: 316 EKIYELVKHHVDGKEFPL--IRAMICAYSKCSVTDRIKKIEALM---RLIPEKEYRPWLN 370
E + + + EF L +++ +S+C + +K M ++PE+ L
Sbjct: 692 EALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEE----VLC 747
Query: 371 VLLIRVYAKEDCLEE 385
+ L+R Y K L+E
Sbjct: 748 ICLLREYYKRGQLDE 762
>gi|299473436|emb|CBN77833.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1139
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
I AG V LA F E + + N+L+ A+ G D+ +F D
Sbjct: 136 ISRAGACRRVRLAERFFREMLEAGITPDVQAINSLINAFAKAGSPDQALKVF-DQMSRYG 194
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
++PS++T+NTLI GR +D F + + LSPN T++ LI + + G+V+
Sbjct: 195 VTPSVITFNTLIDACGRAGDIDRARQVFSRLSQAGLSPNDRTFSALIHSHA---VQGQVD 251
Query: 282 EIY---QMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
E + Q M+A + P+ TY L+ +G L R
Sbjct: 252 EAFSWLQEMRARGLEPNRVTYSALINACGRAGQLAR 287
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
N L A G D C + + + + P+IVT++TLIS G V E F+E+
Sbjct: 98 NVFLRALGDAGRIDDCVAAYEAMLA-CQLRPTIVTFSTLISRAGACRRVRLAERFFREML 156
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
++ ++P+V N LI + A + +++ M V P T+ L+ +G++
Sbjct: 157 EAGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDID 216
Query: 314 RMEKIY 319
R +++
Sbjct: 217 RARQVF 222
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 12/151 (7%)
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
+ + + GS P AL+V + R YG + + I GR ++D A +F+
Sbjct: 169 SLINAFAKAGS-PDQALKVFDQMSR---YGVTPSVITFNTLIDACGRAGDIDRARQVFSR 224
Query: 182 AANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
+ L T++AL+ ++ G D+ S ++++ + P+ VTY+ LI+ GR
Sbjct: 225 LSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARG-LEPNRVTYSALINACGR-- 281
Query: 241 LVDHMEAAFQ---EIKDSNLSPNVFTYNYLI 268
+ AFQ E+ + + PNV T+ LI
Sbjct: 282 -AGQLARAFQTLDEMFGTGIEPNVVTWTTLI 311
>gi|255660870|gb|ACU25604.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 476
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K ISP +VTYNT+I+ + R+ ++ E F E
Sbjct: 144 TFNVMIWGFFLSGKVETAIRFFEDMKSR-EISPDVVTYNTMINGYYRVKKMEEAEKYFVE 202
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK P+ TY LL G ++
Sbjct: 203 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGTKPNAITYSTLLPGLCNAEK 262
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E++ ++ + + +I ++ K D + +A++RL
Sbjct: 263 MSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAMIRL 312
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 80/172 (46%), Gaps = 14/172 (8%)
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLF 213
+E + K I+ GR + ++ A + + K L+ + ++ +Y G+ + +F
Sbjct: 36 NRETHLKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVMMIDSYGKEGIVQESVKMF 95
Query: 214 RDLKKEANISPSIVTYNTLISVF---GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+ ++ E + +I +YN L V GR ++ + F ++ + P T+N +I G
Sbjct: 96 QKME-ELGVERTIKSYNALFKVILRRGRYMMG---KRYFNKMLSEGIEPTRHTFNVMIWG 151
Query: 271 YMTAWMWGKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ ++ GKVE ++ MK+ + PD TY ++ GY + EK +
Sbjct: 152 F---FLSGKVETAIRFFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYF 200
>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 570
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 100/240 (41%), Gaps = 8/240 (3%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I A R N D A F + + TY+ ++ Y G D+ +L+ +K
Sbjct: 81 YSTLISCANRCNYQDAAMAWFDRMHDAQCVPDAVTYSTMIDVYGKVGKYDEAVALYESVK 140
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K + P VTY T++ +FGR + + F E+K S + P YN +I+ A
Sbjct: 141 K-SGWKPDKVTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQPGSVVYNIMISCLGRAGRM 199
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
G +++Q MK V P+ T ++ Y+ SG + I+ HH+ I
Sbjct: 200 GHALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGKVMEGLGIF----HHMRQDLACDIIVY 255
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKSINDAFE 395
C + + E +R + E ++P W +I +YAK E ++ + E
Sbjct: 256 NAVIKMCREAGLVPEAEQYLREMVEYGHQPNDWTYRNMISLYAKNGMAVEAQRMFSQLVE 315
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 15/173 (8%)
Query: 165 FAGRINNVDLAADL--------------FAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210
F G +N D+ A L + +A I TYN +L + Q
Sbjct: 4 FEGSLNPYDVVAILNTLKSWKVALSLFKWLQAEQNFNLNIYTYNVMLKVLRRGQQWELSQ 63
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+ D+ A I P +TY+TLIS R D A F + D+ P+ TY+ +I
Sbjct: 64 QIAEDMIN-AGIRPDNITYSTLISCANRCNYQDAAMAWFDRMHDAQCVPDAVTYSTMIDV 122
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
Y + + +Y+ +K PD TY ++R + +G + I++ +K
Sbjct: 123 YGKVGKYDEAVALYESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVSIFDEMK 175
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 6/185 (3%)
Query: 149 GYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSD 207
G G Y I GR + A +F E +K T + ++ Y +G
Sbjct: 176 GSGIQPGSVVYNIMISCLGRAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEIYSRSGKVM 235
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+ +F ++++ ++ I+ YN +I + LV E +E+ + PN +TY +
Sbjct: 236 EGLGIFHHMRQD--LACDIIVYNAVIKMCREAGLVPEAEQYLREMVEYGHQPNDWTYRNM 293
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
I+ Y M + + ++ + PD +Y LL+GY GN EK+ E++ V
Sbjct: 294 ISLYAKNGMAVEAQRMFSQLVEAGYQPDVMSYTSLLQGY---GNAKDYEKVQEILHEMVS 350
Query: 328 GKEFP 332
P
Sbjct: 351 ANCAP 355
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 85/196 (43%), Gaps = 25/196 (12%)
Query: 111 SCLFRRHSNGYAF--VELMKQLGSRPR-LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAG 167
SCL R G+A + MKQ G +P + L + ++G + +G+
Sbjct: 191 SCLGRAGRMGHALKVFQEMKQAGVKPNAVTLSTVMEIYSRSG--------KVMEGLGIFH 242
Query: 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+ DLA D+ YNA++ GL + + R++ + + P+
Sbjct: 243 HMRQ-DLACDII------------VYNAVIKMCREAGLVPEAEQYLREMVEYGH-QPNDW 288
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TY +IS++ + + + F ++ ++ P+V +Y L+ GY A + KV+EI M
Sbjct: 289 TYRNMISLYAKNGMAVEAQRMFSQLVEAGYQPDVMSYTSLLQGYGNAKDYEKVQEILHEM 348
Query: 288 KAGPVMPDTNTYLLLL 303
+ PD + ++L
Sbjct: 349 VSANCAPDERLWCVIL 364
>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
Length = 701
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 4/164 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I + N+ A +LF E + + + + YN L+ ++ G K +++ L
Sbjct: 187 YGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLL 246
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E+++ PS+ TYN +I+ +L +D + +K + SP++FT++ +I G A +
Sbjct: 247 TESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNF 306
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321
E+++Q M + PD TY +L G +G ++ K +EL
Sbjct: 307 NAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTG---KLNKCFEL 347
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%)
Query: 199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS 258
AY + D+ +LF+++ +P I ++N++++ F E F + + +S
Sbjct: 87 AYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAFIESNQWREAELFFTYFQTAGMS 146
Query: 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
PN+ TYN LI + K + + M + PD +Y L+ A SGNL
Sbjct: 147 PNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLINALAKSGNL 200
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 9/136 (6%)
Query: 189 TIGTYNALLGAYMYNGL--SDKCQSLFRDLKK--EANISPSIVTYNTLISVFGRLLLVDH 244
T+ +YN ++ NGL +++ + LK+ E + P ++TY+ LI R VD
Sbjct: 498 TVVSYNTII-----NGLCKAERFSDAYLSLKEMLEEGLKPDMITYSLLIDGLCRGEKVDM 552
Query: 245 MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304
+ + + L P++ +N +I G TA EI+ M+ +PD T+ ++
Sbjct: 553 ALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIME 612
Query: 305 GYAHSGNLPRMEKIYE 320
G +G+ KI++
Sbjct: 613 GLYKAGDCVEALKIWD 628
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 90/211 (42%), Gaps = 30/211 (14%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C R S+ Y ++ M + G +P + Y+ I R
Sbjct: 508 GLCKAERFSDAYLSLKEMLEEGLKPDMI--------------------TYSLLIDGLCRG 547
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
VD+A +L+ + NK LK + +N ++ D +F + ++ N P +VT
Sbjct: 548 EKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQM-RQVNCVPDLVT 606
Query: 229 YNTLISVFGRLLLVDHMEA--AFQEIKDSNLSPNVFTYNYLIAGYMT-AWMWGKVEEIYQ 285
+NT++ G D +EA + I ++ L P++ +YN G + A + +E +Y
Sbjct: 607 HNTIME--GLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYD 664
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
+ G ++P+ T+ +L+R P ME
Sbjct: 665 ALDRG-ILPNAPTWNVLVRAVVDDK--PLME 692
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 9/186 (4%)
Query: 143 WRRRQAGYGTP--MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGA 199
W R + +P T G+ AG N + A +F E L + TYNA+L
Sbjct: 278 WNRMKKNEKSPDLFTFSSMIHGLSKAG---NFNAAEKVFQEMIESGLSPDVRTYNAMLSG 334
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
G +KC L+ + K N +IV+YN LI V+ +Q + + L
Sbjct: 335 LFRTGKLNKCFELWNVMSK--NNCCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKA 392
Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKI 318
+ TY LI G K I + + DT Y ++ G G L + +E I
Sbjct: 393 DSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYSSMVHGLCKKGMLEQAVELI 452
Query: 319 YELVKH 324
+++ K+
Sbjct: 453 HQMKKN 458
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 71/320 (22%), Positives = 135/320 (42%), Gaps = 43/320 (13%)
Query: 6 KLSDAAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRL 65
KL ++ + R++++ P +FT + S H ++ A VF ++
Sbjct: 267 KLGKLDESMEMWNRMKKNEKSP------DLFTFS-SMIHGLSKAGNFNAAEKVFQEMI-- 317
Query: 66 LSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLD--EKGSCLFRRHSNGYAF 123
E+ PD R T +A+ L L+K F + + K +C N ++
Sbjct: 318 --ESGLSPDVR-------TYNAMLSGLF-RTGKLNKCFELWNVMSKNNC-----CNIVSY 362
Query: 124 VELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN--VDLAADLFAE 181
L++ L ++ + W Q + + + T G+ G N ++ A + E
Sbjct: 363 NMLIQGLLDNKKVEQAICYW---QLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEE 419
Query: 182 AANK--HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
A N+ L T Y++++ G+ ++ L +KK S V +N+LI+ + R
Sbjct: 420 AENEGADLDTFA-YSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHV-FNSLINGYVRA 477
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE-EIYQMMKAGPVMPDTNT 298
++ + +E+K + +P V +YN +I G A + + +M++ G + PD T
Sbjct: 478 FKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEG-LKPDMIT 536
Query: 299 YLLLLRGYAHSGNLPRMEKI 318
Y LL+ G L R EK+
Sbjct: 537 YSLLIDG------LCRGEKV 550
>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 2/152 (1%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
GR VD A +F E + K +YN+L+ NG D+ F+++ E ++P
Sbjct: 499 GRAGKVDEAIKIFEELEDSDYKPDTCSYNSLINCLGKNGHLDEAHMKFKEMC-EKGLNPD 557
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+VTY+TLI FG+ V+ F E+ PN+ TYN L+ + + ++Y
Sbjct: 558 VVTYSTLIECFGKTDKVEMACRLFDEMLAEGCYPNIVTYNILLDCLERSGRTAEAVDLYA 617
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
+K ++PD+ TY +L R + S R+ K
Sbjct: 618 KLKQQGLIPDSITYSVLARLQSGSHRKVRVRK 649
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 2/178 (1%)
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDK 208
+G MT Y ++ R N + ++ E K H+ I +N LL A + + D
Sbjct: 205 WGLRMTGYTYKCLVQAYLRSRNTEKGFAVYLEMKKKGHMLDIFAFNMLLDALVKDSEVDH 264
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
+F D+K++ + P TY +I + G++ D F+E+ + SPNV YN +I
Sbjct: 265 AYKVFEDMKRK-HCEPDEYTYTIMIRMTGKIGKPDESLELFEEMLNKGYSPNVIAYNTMI 323
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
A M K ++ M P TY ++L A L +++++ E+ K ++
Sbjct: 324 QALANARMVDKAILLFLKMVEKECRPSEFTYSVILHLLATERKLHKLDEVVEVSKKYM 381
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E +S V YNT+ S G+L + + ++++K P+ FTYN LI+ + A G
Sbjct: 446 EKGVSVDTVMYNTVFSALGKLKQISPLHDLYEKMKQDGPLPDTFTYNILISSFGRA---G 502
Query: 279 KVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
KV+E I++ ++ PDT +Y L+ +G+L
Sbjct: 503 KVDEAIKIFEELEDSDYKPDTCSYNSLINCLGKNGHL 539
>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
[Oryza sativa Japonica Group]
Length = 571
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 137/338 (40%), Gaps = 20/338 (5%)
Query: 178 LFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
L E+ +H + + NALL + D + FR + +SP I T+NT+IS
Sbjct: 144 LAGESHPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRR-RVSPDIYTFNTVISGLC 202
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI----YQMMKAGPVM 293
R+ + ++IK L+P+V TYN LI GY G + + +M++AG +
Sbjct: 203 RIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAG-IS 261
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P T+ +L+ GY + N +++E +K ++I CS K+
Sbjct: 262 PTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGL--CSE----GKV 315
Query: 354 EALMRLIPEKE---YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTT---VRIMR 407
E ++L+ E E P N + K C + M ND + T V I
Sbjct: 316 EEGVKLMEEMEDLGLSP--NEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYN 373
Query: 408 CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467
++ Y R ++ + G + Y+ + ++ +L EM+
Sbjct: 374 ILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEK 433
Query: 468 KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
I+ T+ ++ A G+ RK ++L M + G +
Sbjct: 434 GIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLE 471
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L+ Y G + ++ + K+ ISP++ TYN LI+ F R E+
Sbjct: 372 YNILIDVYRRLGKMEDAMAVKEAMAKKG-ISPNVTTYNCLITGFSRSGDWRSASGLLDEM 430
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
K+ + +V TYN LI K ++ M + P+ TY +++G+ GN+
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNI 490
Query: 313 -------PRMEK 317
RMEK
Sbjct: 491 KSAYEIRTRMEK 502
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ A G + S+ RD++ A P++VTYNTL++ F R VD E
Sbjct: 152 TYNILIRALCGRGHRKEALSILRDMRG-AGCGPNVVTYNTLVAAFFRAGEVDGAERLVGM 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ D L PN+ T+N ++ G A +++ +MM+ G + PD +Y L+ GY +G
Sbjct: 211 MLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREG-LAPDGVSYNTLVGGYCKAG 269
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ A+ G D + L + + + P++VT+N++++ + ++ F E
Sbjct: 187 TYNTLVAAFFRAGEVDGAERLV-GMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDE 245
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ L+P+ +YN L+ GY A + ++ M +MPD T+ L+ +GN
Sbjct: 246 MMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGN 305
Query: 312 L 312
L
Sbjct: 306 L 306
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 128/312 (41%), Gaps = 32/312 (10%)
Query: 186 HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI-SVFGRLLLVDH 244
++ ++ YNA+L A L+ + F D ++P++ TYN LI ++ GR H
Sbjct: 112 YVPSVLAYNAVLLALSDASLTSARR--FFDSMLSDGVAPNVYTYNILIRALCGR----GH 165
Query: 245 MEAAFQEIKD---SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301
+ A ++D + PNV TYN L+A + A E + MM G + P+ T+
Sbjct: 166 RKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNS 225
Query: 302 LLRGYAHSGNLPRMEKIY-ELVKHHV--DGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
++ G +G + K++ E+++ + DG + ++ Y K + + A M
Sbjct: 226 MVNGMCKAGKMEDARKVFDEMMREGLAPDGVSY---NTLVGGYCKAGCSHEALSVFAEMT 282
Query: 359 LIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC 416
+K P + LI V K LE + E + V ++ + +
Sbjct: 283 ---QKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEV-TFTALIDGFCKK 338
Query: 417 NAVDKLANFVKRAESAGWRLCR-----SLYHSKMVMYASQRRVEEMESVLKEMENYKIDC 471
+D V+ G R CR Y++ + Y R++E +L EME +
Sbjct: 339 GFLDDALLAVR-----GMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKP 393
Query: 472 SKKTFWIMYYAY 483
T+ + AY
Sbjct: 394 DVVTYSTIISAY 405
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 169 INNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+ +D A +L E K LK + TY+ ++ AY N + L + + E + P +
Sbjct: 373 VGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQML-EKGVLPDAI 431
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY--- 284
TY++LI V + F+ + L P+ FTY LI G+ G VE
Sbjct: 432 TYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKE---GNVERALSLH 488
Query: 285 -QMMKAGPVMPDTNTYLLLLRGYAHS 309
+M+KAG V+PD TY +L+ G + S
Sbjct: 489 DKMVKAG-VLPDVVTYSVLINGLSKS 513
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 40/189 (21%)
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSL 212
+T G+ AG++ + A +F E + L G +YN L+G Y G S + S+
Sbjct: 221 VTFNSMVNGMCKAGKMED---ARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSV 277
Query: 213 FRDLKKEANISPSIVTYNTLISV-----------------------------------FG 237
F ++ ++ I P +VT+ +LI V F
Sbjct: 278 FAEMTQKG-IMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFC 336
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN 297
+ +D A + ++ + P+V YN LI GY + E+ M+A + PD
Sbjct: 337 KKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVV 396
Query: 298 TYLLLLRGY 306
TY ++ Y
Sbjct: 397 TYSTIISAY 405
>gi|224141335|ref|XP_002324029.1| predicted protein [Populus trichocarpa]
gi|222867031|gb|EEF04162.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 120/276 (43%), Gaps = 7/276 (2%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ T N ++ Y ++ + LF ++K I P++V+YNTL+ V+G L F
Sbjct: 282 LTTCNVMIDVYGQLDMAKEADRLFWSMRK-MGIEPNVVSYNTLLRVYGETELFGEAIHLF 340
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ ++ ++ NV TYN +I Y + K + Q M+ + P+ TY ++ + +
Sbjct: 341 RLMQKKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQNRGIEPNAITYSTIISIWGKA 400
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G L R +++ ++ + L + MI AY + + K+ L+ + + P
Sbjct: 401 GKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERSGLVAHAKR---LLHELKHPDSIPRE 457
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
I++ A+ +EE AF+ V + + C+V + R + ++
Sbjct: 458 TA--IKILARAGRIEEATWVFRQAFD-AGEVKDISVFGCMVDLFSRNRKPANVIEVFEKM 514
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
AG+ ++ + Y E+ +++ KEM+
Sbjct: 515 RGAGYFPDSNVIALVLNAYGKLHEFEKADALYKEMQ 550
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/365 (20%), Positives = 145/365 (39%), Gaps = 39/365 (10%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNA 195
+L +L+W A Y + Y ++ R D A LF E N+ L TY+
Sbjct: 90 SLALLDWINDIARYSPSVFA--YNVVLRNVLRAKQWDHAHGLFDEMRNRALAPDRYTYST 147
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ + G+ D + ++++ +S +V Y+ LI + +L + F +K S
Sbjct: 148 LITHFGKAGMFDASLFWLQQMEQD-RVSGDLVLYSNLIELSRKLCDYSKAISIFMRLKRS 206
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
+ P++ YN +I + A ++ + + + + M+ VMPDT +Y LL Y +
Sbjct: 207 GIMPDLVAYNSMINVFGKAKLFREAKLLMKEMREVGVMPDTVSYSTLLSVYVENEKFVEA 266
Query: 316 EKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIR 375
++ + + MI Y + + ++ MR + + N LL R
Sbjct: 267 LSVFAEMNEAKCPLDLTTCNVMIDVYGQLDMAKEADRLFWSMRKMGIEPNVVSYNTLL-R 325
Query: 376 VYAKEDCLEE----------------------MEKSINDAFEHKTSVTTVRIMR------ 407
VY + + E M K + EH+ + ++ M+
Sbjct: 326 VYGETELFGEAIHLFRLMQKKDIEQNVVTYNTMIKVYGKSLEHEKATNLMQEMQNRGIEP 385
Query: 408 ------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL 461
I+S + + +D+ A ++ S+G + + LY + +V Y V + +L
Sbjct: 386 NAITYSTIISIWGKAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERSGLVAHAKRLL 445
Query: 462 KEMEN 466
E+++
Sbjct: 446 HELKH 450
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 107/237 (45%), Gaps = 14/237 (5%)
Query: 175 AADLFAEAANKHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
A DL + A HL+++G TY AL+ A+ ++ L +++ E P++VT
Sbjct: 160 AGDL--DGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMR-ERGCPPNLVT 216
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN L+ +L +V + +++ + +PNV T+N L+ G+ ++ +M
Sbjct: 217 YNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMV 276
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
A + P+ TY L+ G S +++ E +K + A+I K D
Sbjct: 277 AKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCK---AD 333
Query: 349 RIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTV 403
+I++ E ++R + P + V +I + K L E +K++ + + + S V
Sbjct: 334 KIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVV 390
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 84/419 (20%), Positives = 166/419 (39%), Gaps = 24/419 (5%)
Query: 93 LANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRL--ALEVLNWRRRQAGY 150
+AN DLD L G N + L+ +L A+++L R +
Sbjct: 157 MANAGDLDGAMDHLRSMGC-----DPNVVTYTALIAAFARAKKLEEAMKLLEEMRER--- 208
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G P Y + +++ V A D+ + + T+N+L+ + G D
Sbjct: 209 GCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDA 268
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+ L + + P++VTY+ LI + + +E+K ++P+ FTY+ LI
Sbjct: 269 RKLL-GIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIH 327
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329
G A + E++ + M PD Y ++ + SG L +K + ++
Sbjct: 328 GLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSP 387
Query: 330 EFPLIRAMI---CAYSKCSVTDRI-KKIEALMRLIPEK-EYRPWLNVLLIRVYAKEDCLE 384
+ +I C K + I ++++ ++P+ Y +N L K D L
Sbjct: 388 DVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGL-----CKSDMLV 442
Query: 385 EMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSK 444
E +K ++ + + V I+ +C +++ ++ + AG Y +
Sbjct: 443 EAQKLLDRMCKAGCNPDVVTYTT-IIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTL 501
Query: 445 MVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ R+V+E E V++EM N + T+ M G+ ++ Q++ M K+G
Sbjct: 502 ISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRM-KDG 559
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 5/193 (2%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL 196
A + L R+Q +T G+ G+I + + E+ + L + TY+ +
Sbjct: 373 AQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDV-LPDVVTYSTV 431
Query: 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256
+ + + + Q L + K A +P +VTY T+I + ++ E Q +K +
Sbjct: 432 INGLCKSDMLVEAQKLLDRMCK-AGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAG 490
Query: 257 LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
+PNV TY LI+G A + E + + M+ P+ TY ++ G SG R++
Sbjct: 491 CAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSG---RIK 547
Query: 317 KIYELVKHHVDGK 329
+ +LV+ DG+
Sbjct: 548 EAQQLVQRMKDGR 560
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 124/307 (40%), Gaps = 33/307 (10%)
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAA--FQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
S + ++N+L+ V R H EA F+ ++ P+V +YN +I+G+ A
Sbjct: 72 GFSHTAFSWNSLLQVLVRC--KKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLH 129
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338
E+ + MK+ PD T+ ++ A++G+L + + ++ A+I
Sbjct: 130 AALELLEEMKSAGFAPDAFTHTPIITAMANAGDL---DGAMDHLRSMGCDPNVVTYTALI 186
Query: 339 CAYSKCSVTDRIKKIEALMRLIPEKEYR---PWL---NVL------LIRVYAKEDCLEEM 386
A++ R KK+E M+L+ E R P L NVL L V A +D +++M
Sbjct: 187 AAFA------RAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKM 240
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446
I F V +V + + VD + + G R Y + +
Sbjct: 241 ---IEGGF-----APNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALID 292
Query: 447 MYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDV 506
++ E + VL+EM+ + T+ + + + + Q+L M +G
Sbjct: 293 GLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTP 352
Query: 507 PVNAFPS 513
V + S
Sbjct: 353 DVVVYSS 359
>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/355 (20%), Positives = 146/355 (41%), Gaps = 13/355 (3%)
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLA---ADLFAEAANKHLKTIGTYN 194
L NW Q G+ + E Y + + F+G++ D+A DL +A N + T+ T+
Sbjct: 78 LAFFNWASNQDGFRK--SPEAYNEMVDFSGQVMMFDVAWYFIDLM-KARNVDV-TVETFL 133
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
L+ Y+ GL+ + F ++ + N P + ++ LIS+ R + F +KD
Sbjct: 134 ILMRRYVRAGLAAEAIHAFNRME-DYNCKPDKIAFSILISILCRERRASQAQEFFDSLKD 192
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
P+V Y L+ G+ A + E ++ MK + P+ TY +++ G + R
Sbjct: 193 K-FEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITR 251
Query: 315 MEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLL 373
I+ E++ +++ + K T+++ ++ M+ + + N L
Sbjct: 252 AHDIFAEMLDAGCQPNSITY-NSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYN-FL 309
Query: 374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
I + K++ LE+ K I K + + V+ K+ +
Sbjct: 310 IETHCKDENLEDAIKVIG-LMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKELN 368
Query: 434 WRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
Y++ M M+ + + + + + EM+ KI+ + T+ ++ Y G
Sbjct: 369 CEANTVTYNTLMKMFVASKSTDMVLKLKTEMDENKIEPNVNTYKVLITMYCGMGH 423
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 2/200 (1%)
Query: 123 FVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEA 182
F+ LM++ R LA E ++ R Y K ++ I R A + F
Sbjct: 132 FLILMRRY-VRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILCRERRASQAQEFFDSL 190
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
+K + Y L+ + G + + +F ++K A I P++ TY+ +I R +
Sbjct: 191 KDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKV-AGIKPNVYTYSIVIDSLCRCGQI 249
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
F E+ D+ PN TYN L+ ++ A KV ++Y MK PDT TY L
Sbjct: 250 TRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFL 309
Query: 303 LRGYAHSGNLPRMEKIYELV 322
+ + NL K+ L+
Sbjct: 310 IETHCKDENLEDAIKVIGLM 329
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 83/206 (40%), Gaps = 38/206 (18%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I R + A D+FAE + + TYN+L+ ++ G ++K ++ +K
Sbjct: 236 YSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMK 295
Query: 218 -------------------KEANI---------------SPSIVTYNTLISVFGRLLLVD 243
K+ N+ +P+ T+NTL +L V+
Sbjct: 296 RLGCEPDTVTYNFLIETHCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVN 355
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
++++K+ N N TYN L+ ++ + V ++ M + P+ NTY +L+
Sbjct: 356 AAHRMYKKMKELNCEANTVTYNTLMKMFVASKSTDMVLKLKTEMDENKIEPNVNTYKVLI 415
Query: 304 RGYAHSGNLPRMEKIYELVKHHVDGK 329
Y G+ Y+ + +D K
Sbjct: 416 TMYCGMGHW---NNAYKFFREMIDEK 438
>gi|255571041|ref|XP_002526471.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534146|gb|EEF35862.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/337 (19%), Positives = 147/337 (43%), Gaps = 16/337 (4%)
Query: 133 RPRLALEVLNW-RRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG 191
R + ALEV +W R+ + ++ + + ++ V A D F ++ ++K
Sbjct: 116 RHKQALEVYDWMNNREERF--RLSASDAAIQLDLVAKVRGVSSAEDYFMRLSD-NVKDRR 172
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y ALL +Y+ + +K +SL ++K+ + + + +N +++++ L D ++ E
Sbjct: 173 VYGALLNSYVKARMREKAESLIEKMRKK-DYTTHALPFNVMMTLYMNLKEYDKVDMMISE 231
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK-AGPVMPDTNTYLLLLRGYAHSG 310
+ N+ ++++YN ++ + ++EE+Y+ MK + P+ T+ + Y G
Sbjct: 232 MMAKNIRLDIYSYNIWLSSRGSQGSIERMEEVYEQMKLDSTINPNWTTFSTMATMYIKMG 291
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI----EALMRLIPEKEYR 366
L + E V+ + G++ ++ Y + I ++ +++ IP Y
Sbjct: 292 QLEKAEDCLRRVESRITGRDRIPYHYLLSLYGNVGNKEEIYRVWNIYKSIFATIPNLGYH 351
Query: 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
++ L+ + D +E EK + K+S RI ++ Y R +DK +F
Sbjct: 352 AIISSLV-----RMDDIEGAEKIYEEWLPVKSSYDP-RIGNLLMGWYVRGGNLDKAESFF 405
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463
G + S + + ++R+ E S KE
Sbjct: 406 DHMMEVGGKPNSSTWEILADGHTREKRISEALSCFKE 442
>gi|224138178|ref|XP_002322749.1| predicted protein [Populus trichocarpa]
gi|222867379|gb|EEF04510.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/367 (21%), Positives = 159/367 (43%), Gaps = 12/367 (3%)
Query: 71 TYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQL 130
T P R +K T ++ L + + + D + L+ L + N E +K+L
Sbjct: 44 TTPTGRTKKPWTDAMNVLYNRISSLADQRITISLFLNH--WVLEGQPVNKNQLREFIKEL 101
Query: 131 GSRPRLA--LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK 188
R A LE+ W +GY + ++ + +++ ++ A LF +HLK
Sbjct: 102 RFHKRYAHALEISTWMT-DSGY-FELASQDVAVQLDLISKVHGIEQAQKLFNNTP-QHLK 158
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+ Y+ALL Y L +K +S+ +++ K + +++ YN +++ + + D + +
Sbjct: 159 VLKVYSALLNCYAKAKLVEKAESVVQEM-KSLGFANTLLVYNVILNFYYQTGNPDKINSL 217
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP-VMPDTNTYLLLLRGYA 307
QE++ + + + F ++ ++ Y + +E+ M++ P V D +Y +GY
Sbjct: 218 MQEMEQNGIGCDKFAHSIQLSAYASVSDIVGIEKTLAKMESDPNVFLDWTSYTAAAKGYI 277
Query: 308 HSGNLPRMEKIYELVKHHVDGK-EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
G + + ++ E + V GK ++I Y+ T+ + +I L + EK Y+
Sbjct: 278 KVGLVDKALEMLEKSERLVTGKRRGTAYDSLITLYAATGKTNEVLRIWELYKK-NEKVYK 336
Query: 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
+ +I K D E EK + S + I ++ +Y R V+K +
Sbjct: 337 EAY-ISIITSLLKLDDFENAEKIFEEWEFQNHSCYDIHIPNFLIDAYSRKGLVEKAETLI 395
Query: 427 KRAESAG 433
RA S G
Sbjct: 396 DRAISKG 402
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 378 AKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC 437
+K +E+ +K N+ +H + +++ +++ Y + V+K + V+ +S G+
Sbjct: 138 SKVHGIEQAQKLFNNTPQH---LKVLKVYSALLNCYAKAKLVEKAESVVQEMKSLGFANT 194
Query: 438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLG 497
+Y+ + Y +++ S+++EME I C K I AYA+ + + L
Sbjct: 195 LLVYNVILNFYYQTGNPDKINSLMQEMEQNGIGCDKFAHSIQLSAYASVSDIVGIEKTLA 254
Query: 498 LM 499
M
Sbjct: 255 KM 256
>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
Length = 1443
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 113/469 (24%), Positives = 183/469 (39%), Gaps = 101/469 (21%)
Query: 76 RVRKDLTQTVSALRDELLA-----NVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQL 130
R +D V+ L D +LA VDD VLD R + AFV ++ +
Sbjct: 119 RRAQDWRARVAGLADAVLALPPGAPVDD------VLDGA-----RATPDEVAFV--VRAV 165
Query: 131 G-SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT 189
G S R AL+ W R T + GR +A ++F A + T
Sbjct: 166 GESSWRRALDAFEWLARS----TAPASRAVAVVLGVLGRARQDSIAEEVFLRFAGEG-AT 220
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI---SVFGRLLLVDHME 246
+ +NA++G Y +G D + L D + I P +V++NTLI S G L ++
Sbjct: 221 VQVFNAMMGVYARSGRFDDARQLL-DTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALD 279
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTA----------------------WMW------- 277
F E++ S L P+V TYN LI+ + W +
Sbjct: 280 LLF-EVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVH 338
Query: 278 ---GKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI-YELVKH------ 324
GK EE ++ + MPD TY LL +A GN+ ++E ELVK
Sbjct: 339 GRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNE 398
Query: 325 -------HVDGKEFPL---------IRAMICAYSKCSVT---------DRIKKIEALMRL 359
H+ GK L +RA+ C + T D+I + ++
Sbjct: 399 ITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLED 458
Query: 360 IPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF-RC 416
+ + +P L LI YAK + EK+ + + V R+ ++ F R
Sbjct: 459 MADAGLKPTLVAFSALICAYAKGGRRADAEKTFDCMI--ASGVKPDRLAYLVMLDVFARS 516
Query: 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+K+ + + +R +Y +V A + + EE+E ++++ME
Sbjct: 517 GETEKMLRLYRTMMNDNYRPDDDMYQVLLVALAKEDKCEEIEEIIQDME 565
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 3/194 (1%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
G ++ V+ + +A K K TYN ++ Y G D L+ +++ +P
Sbjct: 377 GNVDKVEHTCEELVKAGFK--KNEITYNTMIHMYGKMGRLDLAVGLYDEMRA-VGCTPDA 433
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTY +I G++ + +++ D+ L P + ++ LI Y E+ +
Sbjct: 434 VTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPTLVAFSALICAYAKGGRRADAEKTFDC 493
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346
M A V PD YL++L +A SG +M ++Y + + + + + ++ A +K
Sbjct: 494 MIASGVKPDRLAYLVMLDVFARSGETEKMLRLYRTMMNDNYRPDDDMYQVLLVALAKEDK 553
Query: 347 TDRIKKIEALMRLI 360
+ I++I M L+
Sbjct: 554 CEEIEEIIQDMELL 567
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 142/317 (44%), Gaps = 29/317 (9%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS---VFGRLLLVDHMEAAF 249
+NAL+ AY +GL +K +++F ++ K + P++ + N ++ V GRL D +
Sbjct: 783 WNALIHAYAESGLYEKARAVFDNMIKTGPL-PTVDSVNGMMRALIVDGRL---DELYVVV 838
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
E++D + + T ++ + A +V +IY MKA +P+ + Y + H
Sbjct: 839 GELQDMDFKISKSTVLLMLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHH 898
Query: 310 GNLPRMEKIYELVKHHVDGKEF----PLIRAMICAYSKCSVTDRIKKI-EALMR--LIPE 362
+ EL+ ++G F + +++ Y+ DR ++ ++++ L P+
Sbjct: 899 NRF----RDVELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPD 954
Query: 363 KEYRPWLNVLLIRVYAKED---CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
++ L V+ R E+ L EM K + ++ + ++++ +
Sbjct: 955 EDTYNTLIVMYCRSLRPEEGFTLLNEMGK--------RGLTPKLQSYKSLLAASAKAELR 1006
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
++ + S ++L RS+YH M +Y + + E++L M+ I+ + T I+
Sbjct: 1007 EQADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHIL 1066
Query: 480 YYAYATCGQRRKVNQVL 496
+Y T GQ + VL
Sbjct: 1067 MTSYGTAGQPHEAENVL 1083
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 84/171 (49%), Gaps = 8/171 (4%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R +V+L + AE K + +N+LL Y G D+ +++ + EA + P
Sbjct: 900 RFRDVEL---MIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSIL-EAGLEPDE 955
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TYNTLI ++ R L + E+ L+P + +Y L+A A + + +++++
Sbjct: 956 DTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQLFEE 1015
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
M++ + + Y ++++ Y ++GN + E + ++K DG E P I M
Sbjct: 1016 MRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKE--DGIE-PTIATM 1063
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ Y + ++ +L ++ K ++P + +Y +L++ + L + + F+E
Sbjct: 957 TYNTLIVMYCRSLRPEEGFTLLNEMGKRG-LTPKLQSYKSLLAASAKAELREQADQLFEE 1015
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + N Y+ ++ Y A K E + +MK + P T +L+ Y +G
Sbjct: 1016 MRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQ 1075
Query: 312 LPRMEKIYELVK 323
E + +K
Sbjct: 1076 PHEAENVLNSLK 1087
>gi|255660940|gb|ACU25639.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 484
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K I P +VTYNT+++ + R+ ++ E F E
Sbjct: 152 TFNVMMWGFFLSGKVETANRFFEDMKSR-EIMPDVVTYNTMVNGYCRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + MK + P+ TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDRVDDALRFVEEMKGFGMKPNAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E+V ++ + + +I K D + +A++RL
Sbjct: 271 MSEARSILKEMVDKYIAPTDNSIFMRLISGQCKAGDLDAAANVLKAMIRL 320
>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 743
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/272 (19%), Positives = 119/272 (43%), Gaps = 1/272 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ T+N L+ Y G + + + E N++P VTYNT++ + + ++
Sbjct: 204 VKTFNVLVNGYCLEGKLEDALGMLERMVSEFNVNPDNVTYNTILKAMSKKGRLSDVKDLL 263
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
++K + L PN TYN L+ GY + +I ++MK ++PD TY +L+ G ++
Sbjct: 264 LDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNA 323
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G++ ++ +++K + +I + ++ KK+ M K +
Sbjct: 324 GSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKLMEQMENDGVKPNQVTH 383
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
N+ L + KE+ EE+ + + + E + ++ +Y + + ++
Sbjct: 384 NISL-KWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREM 442
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVL 461
G ++ ++ + +R+V+E ++L
Sbjct: 443 GQKGIKMNTITLNTILDALCKERKVDEAHNLL 474
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 136/317 (42%), Gaps = 28/317 (8%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN +L A G + L D+K+ + P+ VTYN L+ + +L ++ AFQ
Sbjct: 242 TYNTILKAMSKKGRLSDVKDLLLDMKRNG-LVPNRVTYNNLVYGYCKL---GSLKEAFQI 297
Query: 252 I---KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ K +N+ P++ TYN LI G A + E+ +MK+ + PD TY L+ G
Sbjct: 298 VELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLIDGCFE 357
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G +K+ E +++ DG + + I C R + + L+ + P
Sbjct: 358 LGLSLEAKKLMEQMEN--DGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPD 415
Query: 369 LNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
+ LI+ Y K L + + + + + T+ + I+ + + VD+ N +
Sbjct: 416 IVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTI-TLNTILDALCKERKVDEAHNLL 474
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
A G+ + Y + ++ Y + +VE+ + EM+ KI + TF
Sbjct: 475 DSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTF---------- 524
Query: 487 GQRRKVNQVLGLMCKNG 503
N ++G +C +G
Sbjct: 525 ------NSLIGGLCHHG 535
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T N LL G+++K + F L E + VTYNT+IS F + + E
Sbjct: 593 TCNILLNGLCKEGMTEKALNFFNTLITEREVD--TVTYNTMISAFCKDKKLKEAYDLLSE 650
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
+++ L P+ FTYN +I M GK+ E +++K
Sbjct: 651 MEEKRLEPDRFTYNSIITSLMED---GKLSEADELLK 684
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TY+ L+ AY+ G + R++ ++ I + +T NT++ + VD
Sbjct: 416 IVTYHTLIKAYLKVGDLSGALEMMREMGQKG-IKMNTITLNTILDALCKERKVDEAHNLL 474
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ TY LI GY K E++ MK + P T+ L+ G H
Sbjct: 475 DSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHH 534
Query: 310 GNLP-RMEKIYELVK 323
G MEK EL +
Sbjct: 535 GKTELAMEKFDELAE 549
>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYNALL G Q+L+ + K A SP +VTYNTL+ F ++ +D F
Sbjct: 87 TYNALLSGLCNGGRMSDAQALYERMIK-AGYSPDVVTYNTLLHGFCKVGKLDEALKIFDG 145
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
P+V TYN LI G+ A + + I Q M + ++PD TY L+ G +G
Sbjct: 146 AVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNG 204
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 97/231 (41%), Gaps = 12/231 (5%)
Query: 114 FRRHS---NGYAFVELMKQLGSRPRLA-LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
R+H N + L+ L + R++ + L R +AGY + Y + ++
Sbjct: 76 MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVT--YNTLLHGFCKV 133
Query: 170 NNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+D A +F A + + + TYNAL+ + D+ Q + + + E+ + P +VT
Sbjct: 134 GKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSES-LVPDVVT 192
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW-MWGKVEEIYQMM 287
YN+L++ + VD A I D SPNV TY+ LI+G ++ + M
Sbjct: 193 YNSLVNGLCKNGRVDE---ARMLIVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKM 249
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338
PD +Y L+ G A + K++ V E P +I
Sbjct: 250 VLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILI 300
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 12/277 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY + G + + +D+ ++ + P +V++N +I+ + VD E
Sbjct: 330 TYTVFIDGLCKAGRVEDALLMLKDMDEKGCV-PDVVSHNAVINGLCKEKRVDEAEVLLSG 388
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ SPN ++N LI G A W K ++ M V P TY +L+ G +
Sbjct: 389 MEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQ 448
Query: 312 LPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
R+++ L ++ P + A+I K D +++ M K P
Sbjct: 449 EGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAME---AKGCIPN 505
Query: 369 L---NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
+ N L+ + + E +E + A K V I+S+ + VDK
Sbjct: 506 VYTYNSLISGLCGLDKVDEALELFV--AMVEKGCVPDTITYGTIISALCKQEMVDKALAL 563
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
+ AG +Y S + + RV+E +L+
Sbjct: 564 FDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLLQ 600
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 2/137 (1%)
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
I T+N IS R + + F ++ PN TYN L++G + +Y+
Sbjct: 50 ISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYE 109
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
M PD TY LL G+ G L KI++ + A+I + K
Sbjct: 110 RMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKAD 169
Query: 346 VTDRIKKIEALMRLIPE 362
D ++I L R++ E
Sbjct: 170 KLDEAQRI--LQRMVSE 184
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 179 FAEAANKHLK-TIGTYNALLGAYM---YNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234
F E + +K T+ TYN L+ G + +LF + ++ + P +VTY+ LI
Sbjct: 421 FKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRV-PDVVTYSALID 479
Query: 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294
G+ +D ++ PNV+TYN LI+G + E++ M +P
Sbjct: 480 GLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVP 539
Query: 295 DTNTY 299
DT TY
Sbjct: 540 DTITY 544
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 36/87 (41%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P IV+YN LI R V F + P V TYN LI G + + E+
Sbjct: 256 PDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFEL 315
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + + PD TY + + G +G
Sbjct: 316 FSGLVKHGLEPDAITYTVFIDGLCKAG 342
>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
Length = 798
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N L+GAY +G+ D+ F ++++ + P+IVTY T++ R+ VD + F +
Sbjct: 349 FNILIGAYAKHGMVDEAMLAFSKMRQQG-LHPNIVTYGTVMDALCRVGKVDDAMSQFDRL 407
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
L+PN + LI G W K EE+ M + P+T + LL G +
Sbjct: 408 ISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMV 467
Query: 313 PRMEKIYELV 322
R + I++L+
Sbjct: 468 TRAKNIFDLM 477
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/332 (19%), Positives = 133/332 (40%), Gaps = 20/332 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y ++ + G DK LF ++ + +SP+ +TYN L+ + F++
Sbjct: 208 SYTTVINGLLREGQLDKAYCLFDEMLDQG-MSPNCITYNCLLHGYCSSGKPKEAIGIFRK 266
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + P+V TYN L+ + +++ M PD++ Y LL GYA G
Sbjct: 267 MCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGY 326
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR---LIPEKEYRPW 368
L +M ++ +++ + + + +I AY+K + D + MR L P
Sbjct: 327 LVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGT 386
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+ L RV +D + + ++ I++ V R ++ C+ DK
Sbjct: 387 VMDALCRVGKVDDAMSQFDRLISEGLTPNGVV-----FRTLIHGLCACDKWDKAEELA-- 439
Query: 429 AESAGWRLCRS--LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
E G +C + +++ + + V +++ M + C T+ + Y
Sbjct: 440 VEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLD 499
Query: 487 GQRRKVNQVLGLMCKNG-------YDVPVNAF 511
G+ + ++L M +G Y+ +N +
Sbjct: 500 GKVDEATKLLEGMVLDGVKPNEVTYNTIINGY 531
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 9/168 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ Y +G D+ L + + + P+ VTYNT+I+ + + ++ + F++
Sbjct: 488 TYTTLIDGYCLDGKVDEATKLLEGMVLDG-VKPNEVTYNTIINGYCKNGRIEDACSLFRQ 546
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ-MMKAGPVMPDTNTYLLLLRGYAHSG 310
+ ++P + Y+ ++ G +E+Y M+K G +P TY ++L+G +
Sbjct: 547 MASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLP-IGTYNIILQGLCQNN 605
Query: 311 ---NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA 355
+ RM L+ H+ + F + MI A K D K + A
Sbjct: 606 CTDDALRMFHNLCLIDFHLQNRTFNI---MIDALLKGGRHDEAKDLFA 650
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS-----DKCQSLFRDLKKEANI 222
R+ VD A F ++ L T N ++ + +GL DK + L ++ I
Sbjct: 393 RVGKVDDAMSQFDRLISEGL----TPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRG-I 447
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
P+ + +NTL++ + +V + F + ++ +V TY LI GY + GKV+E
Sbjct: 448 CPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGY---CLDGKVDE 504
Query: 283 IYQMMKA---GPVMPDTNTYLLLLRGYAHSGNL 312
++++ V P+ TY ++ GY +G +
Sbjct: 505 ATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRI 537
>gi|225446761|ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040
[Vitis vinifera]
gi|302143502|emb|CBI22063.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 142/328 (43%), Gaps = 46/328 (14%)
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ AY G +K + +F D+ K+ SPS++++ L+ +G+ + E+ F+ + S
Sbjct: 146 LVTAYGKQGDFNKAERVFGDMHKKG-YSPSVISHTALMEAYGKGKQYNKAESVFRRMLSS 204
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM---KAGPVMPDTNTYLLLLRGYAHSGNL 312
P+ TY ++ ++ + + EE ++ + + P+ PD + +++ Y +GN
Sbjct: 205 GPEPSALTYQLILKIFVEGNKFKEAEETFETLLDDEKSPLKPDQKMFHMMIYMYRKAGNY 264
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL--N 370
+ KI+ L+ +E + ++ + S S K++ + RP +
Sbjct: 265 EKARKIFGLM------RERGVPQSTVTYNSLMSFETNYKEVSKTYDQMQRAGLRPDVVSY 318
Query: 371 VLLIRVYAK----EDCL---EEM--------EKSIN---DAF-------EHKTSVTTVRI 405
LLI Y K E+ L EEM K+ N DAF + +T ++R
Sbjct: 319 ALLINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKSMRR 378
Query: 406 MRC---------IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
RC ++S+Y + ++ F +R + G+ Y + + YA +E+
Sbjct: 379 DRCTPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFEPNVVTYGTLIKGYAKISNLEK 438
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYA 484
M +EM+ + I ++ + M AY
Sbjct: 439 MMEKYEEMQVHGIKANQAIYTAMMDAYG 466
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 3/193 (1%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210
G P + Y + F V D A + + +Y L+ AY ++
Sbjct: 278 GVPQSTVTYNSLMSFETNYKEVSKTYDQMQRAGLR--PDVVSYALLINAYGKARREEEAL 335
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
++F ++ +A + P+ YN L+ F +VD F+ ++ +P++ +Y +++
Sbjct: 336 AVFEEML-DAGVRPTHKAYNILLDAFAISGMVDQARTVFKSMRRDRCTPDICSYTTMLSA 394
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
Y+ A E+ ++ +K P+ TY L++GYA NL +M + YE ++ H
Sbjct: 395 YVNASDMEGAEKFFRRLKQDGFEPNVVTYGTLIKGYAKISNLEKMMEKYEEMQVHGIKAN 454
Query: 331 FPLIRAMICAYSK 343
+ AM+ AY K
Sbjct: 455 QAIYTAMMDAYGK 467
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I +Y +L AY+ + + FR LK++ P++VTY TLI + ++ ++ M +
Sbjct: 385 ICSYTTMLSAYVNASDMEGAEKFFRRLKQDG-FEPNVVTYGTLIKGYAKISNLEKMMEKY 443
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
+E++ + N Y ++ Y +G ++ M V PD +LL
Sbjct: 444 EEMQVHGIKANQAIYTAMMDAYGKNKDFGSAVFWFKEMGFCGVPPDRKATNILL 497
>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 918
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 120/310 (38%), Gaps = 19/310 (6%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT 192
R + A VLN R +T E KG G L + + H + T
Sbjct: 405 RIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG--HSANLVT 462
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN ++ Y +G + + DL ++ P +Y LI F ++ ++ F E+
Sbjct: 463 YNTIIKGYCDSGNTTSALRIL-DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEM 521
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
D L PN TY LI GY + + MK P+ TY +L+ G N
Sbjct: 522 VDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNF 581
Query: 313 PRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
E EL K ++ FP + AMI K T +E ++I E+ P
Sbjct: 582 SGAE---ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSL--ALEMFNKMI-EQGCLP-- 633
Query: 370 NVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
N+L LIR +E +EE E + H + ++ ++ +Y V+ NF
Sbjct: 634 NLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVK-MIEAYIMSGKVEHAFNF 692
Query: 426 VKRAESAGWR 435
+ R AG +
Sbjct: 693 LGRMIKAGCQ 702
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 125/320 (39%), Gaps = 19/320 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA--AF 249
TYNAL+ + N K + +L SP+IVTYN +I G +L D +A
Sbjct: 392 TYNALINILVEN-RRIKYAFVVLNLMGRNGCSPNIVTYNEMIK--GYCILGDPKKAMLVM 448
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ S N+ TYN +I GY + I +M+ G PD +Y L+ G+
Sbjct: 449 NNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFC-- 506
Query: 310 GNLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
+ +ME + L VD P A+I Y K +++ +L+ + R
Sbjct: 507 -KISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCK---DEKLDTATSLLEHMKRSGCR 562
Query: 367 PWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
P + +LI K++ E+ E V I + L
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQR-RVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
F K E L L +S ++ Q +VEE E++ E+E + + + T+ M AY
Sbjct: 623 FNKMIEQGC--LPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAY 680
Query: 484 ATCGQRRKVNQVLGLMCKNG 503
G+ LG M K G
Sbjct: 681 IMSGKVEHAFNFLGRMIKAG 700
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLF 213
+KE + + F ++ L LFA +A HL +G A++ Y + LS+ Q
Sbjct: 157 SKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRY-HRMLSEGVQ--- 212
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
P+++ YN +I+ + V E +++ +S +SP+ FTY +I G+
Sbjct: 213 ----------PNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCR 262
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
+++ M P+T TY L+ G SG R+ + ++L++ +
Sbjct: 263 KHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSG---RVNEAFDLIREMI 312
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 2/146 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I R +++D A +F + A + + TY+ L+ +G ++ L R++
Sbjct: 253 YTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI 312
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
I P+ T I + + F ++K+ PNV+TY LI+G + +
Sbjct: 313 LHG-ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLL 371
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLL 303
++ M V P+T TY L+
Sbjct: 372 KVAIGLFHRMSRDGVFPNTVTYNALI 397
>gi|302757477|ref|XP_002962162.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
gi|300170821|gb|EFJ37422.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
Length = 484
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 117/298 (39%), Gaps = 34/298 (11%)
Query: 44 HSFTR---DLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLD 100
H FTR DL P T + TLV L + + L + L AN D
Sbjct: 169 HLFTRLPHDLVDPDGFT-YSTLVHGLCQA---------ERLEAAIKVYDMMLEANYDGDA 218
Query: 101 KVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLAL----------------EVLNWR 144
+ + + G C RR ++ M Q G +P + E
Sbjct: 219 GAYNAMAD-GFCKERRVDEALEVLKTMIQRGCKPSVVTYNCIINGVCQYKNRIEEAYRLF 277
Query: 145 RRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYN 203
++ G P Y I +I V +LF + L G Y++L+ A++
Sbjct: 278 QQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKV 337
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVF--GRLLLVDHMEAAFQEIKDSNLSPNV 261
D+ +S+ +D + ++ P + Y TLIS + R VD FQ +KD + PNV
Sbjct: 338 RKLDEAKSILQDAARN-HVGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNV 396
Query: 262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
TYN ++ G + + +I+Q M P+ T+ ++ G H G + E+I+
Sbjct: 397 ITYNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGMIHCGKTDKFERIF 454
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 14/239 (5%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA-- 248
G YNA+ + D+ + + + + PS+VTYN +I+ G + +E A
Sbjct: 219 GAYNAMADGFCKERRVDEALEVLKTMIQRG-CKPSVVTYNCIIN--GVCQYKNRIEEAYR 275
Query: 249 -FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
FQ++ S+ PN TY +I G + + E+++ M + PD Y L+ +
Sbjct: 276 LFQQMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFV 335
Query: 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
L + I + + G + + +I Y + + + EAL+ K+ R
Sbjct: 336 KVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCR---ARKPRVDEALLLFQNMKDRRV 392
Query: 368 WLNV----LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
W NV +++R K +E + + F+ K S + + + C DK
Sbjct: 393 WPNVITYNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRM-TFKVMTMGMIHCGKTDKF 450
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 12/202 (5%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ YN +L Y L ++L + K P++ TYNT+I+ + +D F
Sbjct: 114 VTAYNVVLKGYC--DLGRVGRALIKFGKMGKTCKPNVATYNTVINGLCKFGKIDWAVHLF 171
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + P+ FTY+ L+ G A ++Y MM D Y + G+
Sbjct: 172 TRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADGFCKE 231
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-CSVTDRIKKIEALMRLIPEKEYRP- 367
R+++ E++K + P + C + C +RI++ L + + + P
Sbjct: 232 ---RRVDEALEVLKTMIQRGCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPN 288
Query: 368 -----WLNVLLIRVYAKEDCLE 384
+ + L ++Y + CLE
Sbjct: 289 AVTYGTMILGLSKIYEVQRCLE 310
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 80/367 (21%), Positives = 138/367 (37%), Gaps = 28/367 (7%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210
G P Y +K + V A F + + TYN ++ G D
Sbjct: 109 GIPPDVTAYNVVLKGYCDLGRVGRALIKFGKMGKTCKPNVATYNTVINGLCKFGKIDWAV 168
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYL 267
LF L + + P TY+TL+ L + +EAA + + ++N + YN +
Sbjct: 169 HLFTRLPHDL-VDPDGFTYSTLVH---GLCQAERLEAAIKVYDMMLEANYDGDAGAYNAM 224
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
G+ + E+ + M P TY ++ G N R+E+ Y L + V
Sbjct: 225 ADGFCKERRVDEALEVLKTMIQRGCKPSVVTYNCIINGVCQYKN--RIEEAYRLFQQMV- 281
Query: 328 GKEFP----LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKED 381
G + P MI SK +++ L + + + P + LI + K
Sbjct: 282 GSDCPPNAVTYGTMILGLSK---IYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVR 338
Query: 382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA--VDK-LANFVKRAESAGWRLCR 438
L+E + + DA + V + ++S Y R VD+ L F + W
Sbjct: 339 KLDEAKSILQDAARNHVG-PDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVI 397
Query: 439 SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS--KKTFWIMYYAYATCGQRRKVNQVL 496
+ Y+ + R +E + +EM +K+ CS + TF +M CG+ K ++
Sbjct: 398 T-YNIVLRGLCKTGRFDEAYQIFQEM--FKVKCSPNRMTFKVMTMGMIHCGKTDKFERIF 454
Query: 497 GLMCKNG 503
M G
Sbjct: 455 MDMVYKG 461
>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12300, mitochondrial; Flags: Precursor
gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 637
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 23/219 (10%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPR------------------LALEVLNWRRRQAGYG 151
G CL + + ++ M + G +P LA+E+L R+
Sbjct: 202 GLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELL---RKMEERN 258
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQ 210
+ +Y+ I + ++D A +LF E K + T I TYN L+G + G D
Sbjct: 259 IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 318
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
L RD+ K I+P++VT++ LI F + + E +E+ ++P+ TY LI G
Sbjct: 319 KLLRDMIKR-KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDG 377
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ K ++ +M + P+ T+ +L+ GY +
Sbjct: 378 FCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKA 416
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 100/248 (40%), Gaps = 20/248 (8%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G CL R S V+ M ++G +P L +T G+ +G+
Sbjct: 167 GLCLEGRVSEALELVDRMVEMGHKPDL-----------------ITINTLVNGLCLSGKE 209
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
L D E + TY +L +G + L R ++ E NI V Y
Sbjct: 210 AEAMLLIDKMVEYGCQ--PNAVTYGPVLNVMCKSGQTALAMELLRKME-ERNIKLDAVKY 266
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
+ +I + +D+ F E++ ++ N+ TYN LI G+ A W ++ + M
Sbjct: 267 SIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK 326
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
+ P+ T+ +L+ + G L E++++ + H + ++I + K + D+
Sbjct: 327 RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 386
Query: 350 IKKIEALM 357
++ LM
Sbjct: 387 ANQMVDLM 394
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 85/202 (42%), Gaps = 5/202 (2%)
Query: 141 LNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGA 199
L R+ + G Y I+ + +++A +LF E ++ + I TY LL
Sbjct: 423 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 482
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
NG S+K +F ++K + + I YN +I VD F + + P
Sbjct: 483 LCDNGESEKALEIFEKIEK-SKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKP 541
Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
V TYN +I G + E +++ M+ PD TY +L+R + G+ + K+
Sbjct: 542 GVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLI 601
Query: 320 ELVKH---HVDGKEFPLIRAMI 338
E +K VD ++ M+
Sbjct: 602 EELKRCGFSVDASTIKMVIDML 623
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 4/155 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY +L+ + DK + DL P+I T+N LI+ + + +D F++
Sbjct: 370 TYTSLIDGFCKENHLDKANQMV-DLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRK 428
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + + TYN LI G+ +E++Q M + V P+ TY +LL G +G
Sbjct: 429 MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE 488
Query: 312 LPRMEKIYELV---KHHVDGKEFPLIRAMICAYSK 343
+ +I+E + K +D + +I +C SK
Sbjct: 489 SEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK 523
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 2/152 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I + N++D A + +K I T+N L+ Y D LFR +
Sbjct: 371 YTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMS 430
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ + VTYNTLI F L ++ + FQE+ + PN+ TY L+ G
Sbjct: 431 LRGVVADT-VTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGES 489
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
K EI++ ++ + D Y +++ G ++
Sbjct: 490 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNA 521
>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
Length = 918
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/310 (24%), Positives = 120/310 (38%), Gaps = 19/310 (6%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT 192
R + A VLN R +T E KG G L + + H + T
Sbjct: 405 RIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG--HSANLVT 462
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN ++ Y +G + + DL ++ P +Y LI F ++ ++ F E+
Sbjct: 463 YNTIIKGYCDSGNTTSALRIL-DLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEM 521
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
D L PN TY LI GY + + MK P+ TY +L+ G N
Sbjct: 522 VDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNF 581
Query: 313 PRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
E EL K ++ FP + AMI K T +E ++I E+ P
Sbjct: 582 SGAE---ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSL--ALEMFNKMI-EQGCLP-- 633
Query: 370 NVL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
N+L LIR +E +EE E + H + ++ ++ +Y V+ NF
Sbjct: 634 NLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVK-MIEAYIMSGKVEHAFNF 692
Query: 426 VKRAESAGWR 435
+ R AG +
Sbjct: 693 LGRMIKAGCQ 702
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 125/320 (39%), Gaps = 19/320 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA--AF 249
TYNAL+ + N K + +L SP+IVTYN +I G +L D +A
Sbjct: 392 TYNALINILVEN-RRIKYAFVVLNLMGRNGCSPNIVTYNEMIK--GYCILGDPKKAMLVM 448
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ S N+ TYN +I GY + I +M+ G PD +Y L+ G+
Sbjct: 449 NNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFC-- 506
Query: 310 GNLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
+ +ME + L VD P A+I Y K +++ +L+ + R
Sbjct: 507 -KISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCK---DEKLDTATSLLEHMKRSGCR 562
Query: 367 PWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
P + +LI K++ E+ E V I + L
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQR-RVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
F K E L L +S ++ Q +VEE E++ E+E + + + T+ M AY
Sbjct: 623 FNKMIEQGC--LPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAY 680
Query: 484 ATCGQRRKVNQVLGLMCKNG 503
G+ LG M K G
Sbjct: 681 IMSGKVEHAFNFLGRMIKAG 700
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLF 213
+KE + + F ++ L LFA +A HL +G A++ Y + LS+ Q
Sbjct: 157 SKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRY-HRMLSEGVQ--- 212
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
P+++ YN +I+ + V E +++ +S +SP+ FTY +I G+
Sbjct: 213 ----------PNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCR 262
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
+++ M P+T TY L+ G SG R+ + ++L++ +
Sbjct: 263 KHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSG---RVNEAFDLIREMI 312
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 2/146 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I R +++D A +F + A + + TY+ L+ +G ++ L R++
Sbjct: 253 YTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMI 312
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
I P+ T I + + F ++K+ PNV+TY LI+G + +
Sbjct: 313 LHG-ILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGIL 371
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLL 303
++ M V P+T TY L+
Sbjct: 372 KVAIGLFHRMSRDGVFPNTVTYNALI 397
>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 570
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 90/205 (43%), Gaps = 13/205 (6%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R N +D A + NK I TYN L+G+ G+ D L KE N P++
Sbjct: 138 RANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKE-NCKPTV 196
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTY LI +D E+ + NL P++FTYN +I G + +I
Sbjct: 197 VTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISS 256
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD-GKEFPLIRAMICAYSKCS 345
+ + PD TY +LLRG + G + E YEL+ V G E ++ + S C
Sbjct: 257 ISSKGYAPDVITYNILLRGLLNQG---KWEAGYELMSDMVARGCEANVVTYSVLISSVC- 312
Query: 346 VTDRIKKIE---ALMRLIPEKEYRP 367
R K+E L++ + +K +P
Sbjct: 313 ---RDGKVEEGVGLLKDMKKKGLKP 334
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 95/241 (39%), Gaps = 18/241 (7%)
Query: 140 VLNWRRRQAGY---------GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI 190
+LN + +AGY G Y+ I R V+ L + K LK
Sbjct: 276 LLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPD 335
Query: 191 G-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
G Y+ L+ A G D + D+ P IV YNT+++ + D + F
Sbjct: 336 GYCYDPLIAALCKEGRVDLAIEVL-DVMISDGCVPDIVNYNTILACLCKQKRADEALSIF 394
Query: 250 QEIKDSNLSPNVFTYNYLIAG-YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+++ + SPN +YN + + + T + I +M+ G V PD TY L+
Sbjct: 395 EKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKG-VDPDGITYNSLISCLCR 453
Query: 309 SGNLPRMEKIYELVKHHVDGKEF--PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
G + E I LV ++ E ++ I C V+ IE L ++ +K R
Sbjct: 454 DGMVD--EAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMV-DKGCR 510
Query: 367 P 367
P
Sbjct: 511 P 511
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF-- 249
+YN++ A G + + ++ + + P +TYN+LIS R +VD
Sbjct: 408 SYNSMFSALWSTGHKVRALGMILEMLDKG-VDPDGITYNSLISCLCRDGMVDEAIELLVD 466
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
E++ S P+V +YN ++ G E+ M P+ TY L+ G
Sbjct: 467 MEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLIEGIGFG 526
Query: 310 GNL 312
G L
Sbjct: 527 GCL 529
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P ++ YN +I+ F R +D +K+ SP++ TYN LI + M E
Sbjct: 124 PDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEF 183
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ P TY +L+ G + K+ +
Sbjct: 184 KNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLD 220
>gi|302788498|ref|XP_002976018.1| hypothetical protein SELMODRAFT_415910 [Selaginella moellendorffii]
gi|300156294|gb|EFJ22923.1| hypothetical protein SELMODRAFT_415910 [Selaginella moellendorffii]
Length = 603
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 135/310 (43%), Gaps = 29/310 (9%)
Query: 69 TLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMK 128
TL + D ++ L + + +DE +++V LDK E+G L V ++
Sbjct: 141 TLAHSDKLEQELLARIFACKKDESMSSV--LDK----WKEEGKDL-----TVSMIVTVIN 189
Query: 129 QLGSRPRLA--LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH 186
+L + R+A LE++ W + Y + ++ R + A LF E + +
Sbjct: 190 RLKNSNRMAHALEMIEWVVDEPDYKDFKLARSFQ--LEITARSKGIAAAEKLFEELSAEE 247
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
KT YNALL Y++ K + LF ++ K +S S N ++ ++ +
Sbjct: 248 -KTRPVYNALLTRYVFLHNVKKAEGLFEEMDKAGFLSQSPFALNLMMKLYKHKGDNAKFQ 306
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP-VMPDTNTYLLLLRG 305
++ KD + PN+FTYN ++ A +E+I++ MK P PD +Y L +G
Sbjct: 307 EMLEKAKDVAVEPNIFTYNVMLDLKAKAGDVEGMEKIFEEMKLNPNAKPDGTSYFTLCKG 366
Query: 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRA------MICAYSKCSVTDRIKKIEALMRL 359
Y +G + E L++ V P R M+ AY + + ++++ ++
Sbjct: 367 YLKAGLTDKAE--VSLLRMEVG----PFRRTKATFEYMMLAYGQLGLISDVERMWQKCKM 420
Query: 360 IPEKEYRPWL 369
+P + +L
Sbjct: 421 VPGDGFNSFL 430
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Query: 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
+VD A +LF E K ++ + TY++L+ G L D+ E I+P++VT+
Sbjct: 200 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI-EKKINPNLVTF 258
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
N LI F + E ++ ++ P++FTYN LI G+ K +++++ M +
Sbjct: 259 NALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVS 318
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
PD +TY L++G+ S + +++ + H
Sbjct: 319 KDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSH 353
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
L +D+ + N +L T +NAL+ A++ G + + L D+ K + I P I TYN+LI
Sbjct: 242 LLSDMIEKKINPNLVT---FNALIDAFVKEGKFVEAEKLHDDMIKRS-IDPDIFTYNSLI 297
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F +D + F+ + + P++ TYN LI G+ + E+++ M ++
Sbjct: 298 NGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLV 357
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYE 320
DT TY L++G H G+ +K+++
Sbjct: 358 GDTVTYTTLIQGLFHDGDCDNAQKVFK 384
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN+L+ + + DK + +F + + P + TYNTLI F + V+ F
Sbjct: 290 IFTYNSLINGFCMHDRLDKAKQMF-EFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELF 348
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E+ L + TY LI G +++++ M + V PD TY +LL G ++
Sbjct: 349 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 408
Query: 310 GNLPRMEKIYE 320
G L + ++++
Sbjct: 409 GKLEKALEVFD 419
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/327 (19%), Positives = 125/327 (38%), Gaps = 28/327 (8%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C +R S+ A V+ M ++G RP +T G+ +
Sbjct: 89 GYCHGKRISDAVALVDQMVEMGYRP-----------------DTITFTTLIHGLFLHNKA 131
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
+ D + + + TY ++ G D +L ++ A I +V +
Sbjct: 132 SEAVALVDRMVQRGCQ--PNLVTYGVVVNGLCKRGDIDLAFNLLNKMEA-AKIEADVVIF 188
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
NT+I + VD F+E++ + PNV TY+ LI+ + W ++ M
Sbjct: 189 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 248
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+ P+ T+ L+ + G EK++ +++K +D F ++I + + D
Sbjct: 249 KKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTY-NSLINGF---CMHD 304
Query: 349 RIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIM 406
R+ K + + + K+ P L+ LI+ + K +E+ + + H+ V
Sbjct: 305 RLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFRE-MSHRGLVGDTVTY 363
Query: 407 RCIVSSYFRCNAVDKLANFVKRAESAG 433
++ F D K+ S G
Sbjct: 364 TTLIQGLFHDGDCDNAQKVFKQMVSDG 390
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 22/204 (10%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR 168
KG C +R +G EL +++ R + G +T +G+ G
Sbjct: 333 KGFCKSKRVEDG---TELFREMSHRGLV--------------GDTVTYTTLIQGLFHDGD 375
Query: 169 INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+N A +F + + + I TY+ LL NG +K +F D +++ I I
Sbjct: 376 CDN---AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVF-DYMQKSEIKLDIY 431
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
Y T+I + VD F + + PNV TYN +I+G + + + + + M
Sbjct: 432 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 491
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGN 311
K +PD+ TY L+R + G+
Sbjct: 492 KEDGPLPDSGTYNTLIRAHLRDGD 515
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 2/144 (1%)
Query: 170 NNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ +D A +F +K + TYN L+ + + + LFR++ + + VT
Sbjct: 304 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT-VT 362
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y TLI D+ + F+++ + P++ TY+ L+ G K E++ M+
Sbjct: 363 YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQ 422
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNL 312
+ D Y ++ G +G +
Sbjct: 423 KSEIKLDIYIYTTMIEGMCKAGKV 446
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 119/294 (40%), Gaps = 10/294 (3%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM-TAWMWGKVEE 282
PSI +N L+S ++ D + + ++++ +S N++TYN LI + + + +
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342
+ +MMK G P T LL GY H R+ LV V+ P
Sbjct: 68 LGKMMKLG-YEPSIVTLSSLLNGYCHG---KRISDAVALVDQMVEMGYRPDTITFTTLIH 123
Query: 343 KCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLE-EMEKSIN--DAFEHKTS 399
+ ++ + AL+ + ++ +P N++ V C +++ + N + E
Sbjct: 124 GLFLHNKASEAVALVDRMVQRGCQP--NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKI 181
Query: 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES 459
V I I+ S + VD N K E+ G R Y S + S R +
Sbjct: 182 EADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQ 241
Query: 460 VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
+L +M KI+ + TF + A+ G+ + ++ M K D + + S
Sbjct: 242 LLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNS 295
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 5/158 (3%)
Query: 160 TKGIKFAGRINNVDL--AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDL 216
T I G NN L A ++F +K I Y ++ G D LF L
Sbjct: 397 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 456
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
+ + P++VTYNT+IS L+ A +++K+ P+ TYN LI ++
Sbjct: 457 SLKG-VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 515
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
E+ + M++ + D +T + L+ H G L +
Sbjct: 516 KAASAELIREMRSCRFVGDAST-IGLVANMLHDGRLDK 552
>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 539
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 113/249 (45%), Gaps = 37/249 (14%)
Query: 103 FRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEE---- 158
F +L + G C R S Y V +M + G +P +++++ GY + E
Sbjct: 284 FNILID-GLCKLGRVSEAYNVVAVMIKRGWKP----DIVSYNALMNGYCLSGSVGEAKQV 338
Query: 159 ---------------YTKGIKFAGRINNVDLAADLFAEAANKHL--KTIGTYNALLGAYM 201
Y I ++ VD A L E NK+L T+ TYN LL
Sbjct: 339 FDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTV-TYNCLL---- 393
Query: 202 YNGLSDKCQSLFR-DLKK--EANISPS-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
+GLS +SL+ DL + A+ P+ ++TYN L+ + + D A FQ I + +
Sbjct: 394 -DGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGI 452
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
SPN+ TYN L+ G + +EI+Q++ A P+ TY +++ G G L E
Sbjct: 453 SPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEA 512
Query: 318 -IYELVKHH 325
+Y++V ++
Sbjct: 513 LLYKMVNNN 521
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN LL Y + DK +LF+ + E ISP+I TYN L+ + + + + FQ
Sbjct: 423 TYNVLLDDYFKHEKFDKALALFQHII-EIGISPNIRTYNILLDGLCKSGRLKYAKEIFQL 481
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ PN+ TYN +I G + E + M +P+ T+ ++R
Sbjct: 482 LSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNNYLPNYITFDTIVRA 535
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K+ + P+++ YNT+I + LVD E+ ++ + +V++YN +I G+ + +
Sbjct: 202 KKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRF 261
Query: 278 -GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
V+ + +M+ G V PD T+ +L+ G G R+ + Y +V
Sbjct: 262 QAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLG---RVSEAYNVV 304
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
VD A L E ++ + +YN+++ + G L ++ + P + T+N
Sbjct: 226 VDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFN 285
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
LI +L V + P++ +YN L+ GY + G+ ++++ M
Sbjct: 286 ILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVER 345
Query: 291 PVMPDTNTYLLLLRGYA 307
+P+ +Y L+ GY
Sbjct: 346 TALPNVISYCTLINGYC 362
>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 119/282 (42%), Gaps = 33/282 (11%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C + + Y +E MK G P + Y I +I
Sbjct: 596 GFCKCGKVNKAYQLLEEMKTKGFEPTVV--------------------TYGSVIDGLAKI 635
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ +D A LF EA +K ++ + Y++L+ + G D+ + +L ++ ++P++ T
Sbjct: 636 DRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG-LTPNLYT 694
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
+N+L+ + ++ FQ +K+ +PN TY LI G + K +Q M+
Sbjct: 695 WNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQ 754
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+ P T +Y ++ G A +GN+ +++ K + + AMI S +
Sbjct: 755 KQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGN--- 811
Query: 349 RIKKIEALMRLIPEKEYR--PWLN---VLLIRVYAKEDCLEE 385
+ ++A L E R P N V+L+ K DCLE+
Sbjct: 812 --RAMDAF-SLFEETRRRGLPIHNKTCVVLLDTLHKNDCLEQ 850
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 25/221 (11%)
Query: 120 GYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF 179
GY V++M++ RP + YT I +N+ D+ LF
Sbjct: 152 GYDVVQMMRKFKFRPAFS--------------------AYTTLIGAFSAVNHSDMMLTLF 191
Query: 180 AEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238
+ + T+ + L+ + G D SL ++K +++ IV YN I FG+
Sbjct: 192 QQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKS-SSLDADIVLYNVCIDSFGK 250
Query: 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298
+ VD F EI+ + L P+ TY +I A + E+++ ++ +P T
Sbjct: 251 VGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYA 310
Query: 299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
Y ++ GY +G + ++ Y L++ P + A C
Sbjct: 311 YNTMIMGYGSAG---KFDEAYSLLERQRAKGSIPSVIAYNC 348
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 15/212 (7%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G++ VD A ++ + + +T Y +L+ + +G + +++D+ + N SP
Sbjct: 458 GKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQ-NCSPD 516
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+ NT + + + A F+EIK P+ +Y+ LI G + A + E++
Sbjct: 517 LQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFY 576
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
MK + DT Y +++ G+ G ++ K Y+L++ + K F + Y S
Sbjct: 577 SMKEQGCVLDTRAYNIVIDGFCKCG---KVNKAYQLLE-EMKTKGF---EPTVVTYG--S 627
Query: 346 VTDRIKKI----EALMRLIPEKEYRPWLNVLL 373
V D + KI EA M K R LNV++
Sbjct: 628 VIDGLAKIDRLDEAYMLFEEAKSKRIELNVVI 659
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 47/236 (19%), Positives = 95/236 (40%), Gaps = 22/236 (9%)
Query: 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
+YN L+ + +++I M P NT + ++ G + L + +++
Sbjct: 100 SYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMM 159
Query: 323 KHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKE 380
+ F +I A+S + +D + L + + E Y P +++ LIR +AKE
Sbjct: 160 RKFKFRPAFSAYTTLIGAFSAVNHSDMML---TLFQQMQELGYEPTVHLFTTLIRGFAKE 216
Query: 381 -------DCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
L+EM+ S DA + + + S+ + VD F E+ G
Sbjct: 217 GRVDSALSLLDEMKSSSLDA--------DIVLYNVCIDSFGKVGKVDMAWKFFHEIEANG 268
Query: 434 WRLCRSLYHSKMVMYASQRRVEEMESVLKEME-NYKIDCSKKTFWIMYYAYATCGQ 488
+ Y S + + R++E + + +E N ++ C+ + M Y + G+
Sbjct: 269 LKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCT-YAYNTMIMGYGSAGK 323
>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63130, mitochondrial; Flags: Precursor
gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TY++L+ + + D+ + +F +L + P++VTYNTLI F + VD F
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMF-ELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELF 419
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E+ L N TY LI G+ A + +++ M + V+PD TY +LL G ++
Sbjct: 420 REMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNN 479
Query: 310 GNLPRMEKIYELVK 323
G + ++E ++
Sbjct: 480 GKVETALVVFEYLQ 493
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 121/302 (40%), Gaps = 13/302 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ G D SL + ++ + I P +V YNT+I V+ F E
Sbjct: 223 TYGIVVNGLCKRGDIDLALSLLKKME-QGKIEPGVVIYNTIIDALCNYKNVNDALNLFTE 281
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + + PNV TYN LI W + M + P+ T+ L+ + G
Sbjct: 282 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 341
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
L EK+Y E++K +D F ++I + + DR+ + + + L+ K+ P N
Sbjct: 342 LVEAEKLYDEMIKRSIDPDIFTY-SSLINGF---CMHDRLDEAKHMFELMISKDCFP--N 395
Query: 371 VL----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
V+ LI+ + K ++E + + + TV ++ +F+ D
Sbjct: 396 VVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTV-TYTTLIHGFFQARECDNAQIVF 454
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
K+ S G Y + + +VE V + ++ K++ T+ IM
Sbjct: 455 KQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKA 514
Query: 487 GQ 488
G+
Sbjct: 515 GK 516
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 8/156 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y IK + VD +LF E + + L TY L+ + D Q +F+ +
Sbjct: 399 YNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMV 458
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + P I+TY+ L+ V+ F+ ++ S + P+++TYN +I G A
Sbjct: 459 SDG-VLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKA--- 514
Query: 278 GKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
GKVE +++ + V P+ TY ++ G+ G
Sbjct: 515 GKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKG 550
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
L I TY+ LL NG + +F L++ + + P I TYN +I + V+
Sbjct: 463 LPDIMTYSILLDGLCNNGKVETALVVFEYLQR-SKMEPDIYTYNIMIEGMCKAGKVEDGW 521
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
F + + PNV TY +++G+ + + + +++ MK +PD+ TY L+R +
Sbjct: 522 DLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAH 581
Query: 307 AHSGN 311
G+
Sbjct: 582 LRDGD 586
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN ++ G + LF L + + P++VTY T++S F R L + +A F
Sbjct: 501 IYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG-VKPNVVTYTTMMSGFCRKGLKEEADALF 559
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E+K+ P+ TYN LI ++ E+ + M++ + D +T + L+ H
Sbjct: 560 REMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDAST-IGLVTNMLHD 618
Query: 310 GNLPR 314
G L +
Sbjct: 619 GRLDK 623
Score = 39.3 bits (90), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
D +LF D+ K PSIV ++ L+S ++ D + + +++++ +S N++TY+
Sbjct: 63 DDAVNLFGDMVKSRPF-PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121
Query: 267 LIAGYM-TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
LI + + + + + +MMK G PD T LL G+ H GN R+ LV
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLG-YEPDIVTLNSLLNGFCH-GN--RISDAVSLVGQM 177
Query: 326 VD 327
V+
Sbjct: 178 VE 179
>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62680, mitochondrial; Flags: Precursor
gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +LF E + I TY++L+ + D+ +F DL +V+YNTLI
Sbjct: 279 AKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMF-DLMVSKGCLADVVSYNTLI 337
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F + V+ F+E+ L N TYN LI G+ A K +E + M +
Sbjct: 338 NGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGIS 397
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYE 320
PD TY +LL G +G L + I+E
Sbjct: 398 PDIWTYNILLGGLCDNGELEKALVIFE 424
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 112/287 (39%), Gaps = 15/287 (5%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E P IV YN +I + V+ F+EI+ + PNV TY L+ G + W
Sbjct: 183 EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWS 242
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAM 337
+ M + P+ TY LL + +G + ++++ E+V+ +D P I
Sbjct: 243 DAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSID----PDIVTY 298
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDA 393
+ + DRI + + L+ K +V+ LI + K +E+ K +
Sbjct: 299 SSLINGLCLHDRIDEANQMFDLMVSKGCLA--DVVSYNTLINGFCKAKRVEDGMKLFRE- 355
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
+ V+ ++ +F+ VDK F + + G Y+ +
Sbjct: 356 MSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE 415
Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
+E+ + ++M+ ++D T+ + G KV + L C
Sbjct: 416 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTG---KVEEAWSLFC 459
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+VD A + F++ + I TYN LLG NG +K +F D++K + IVT
Sbjct: 379 GDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR-EMDLDIVT 437
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y T+I + V+ + F + L P++ TY +++G T + +VE +Y MK
Sbjct: 438 YTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMK 497
Query: 289 AGPVMPDTNT 298
+M + T
Sbjct: 498 QEGLMKNDCT 507
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 14/155 (9%)
Query: 178 LFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
LF E + + L TYN L+ + G DK Q F + ISP I TYN L+
Sbjct: 352 LFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMD-FFGISPDIWTYNILL--- 407
Query: 237 GRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM---MKAG 290
G L +E A F++++ + ++ TY +I G GKVEE + + +
Sbjct: 408 GGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKT---GKVEEAWSLFCSLSLK 464
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
+ PD TY ++ G G L +E +Y +K
Sbjct: 465 GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQE 499
>gi|302789998|ref|XP_002976767.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
gi|300155805|gb|EFJ22436.1| hypothetical protein SELMODRAFT_105248 [Selaginella moellendorffii]
Length = 669
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 5/239 (2%)
Query: 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAA 176
+ Y F L+ R R E L W R G + Y I GR+ V+ A
Sbjct: 175 QPDNYTFSTLI-NCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAV 233
Query: 177 DLFAE--AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234
+L+ + + N L T+ TY A+ Y G L ++++ ++ SP+ V NTL+
Sbjct: 234 ELYEKLKSVNWKLDTV-TYGAIANVYARAGDYQSIMQLVQEMR-DSGSSPNAVIMNTLMG 291
Query: 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294
+ V+ + F E++ S +SP T + L+ Y + + E+Y+ +K
Sbjct: 292 TLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKC 351
Query: 295 DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
D Y L++ G + + E I + +K + R + Y+ + D +++
Sbjct: 352 DVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPARRM 410
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 122/317 (38%), Gaps = 48/317 (15%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN +L + NG + + I P T++TLI+ R + F+
Sbjct: 145 TYNVML-KILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFER 203
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K + P+ TYN +I Y + E+Y+ +K+ DT TY + YA +G+
Sbjct: 204 MKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGD 263
Query: 312 LPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ I +LV+ D P ++ ++ SK ++ KK+
Sbjct: 264 Y---QSIMQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKV--------------- 305
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
N+ S T V + +V Y R A D+ +
Sbjct: 306 ---------------------FNEMRTSGVSPTPV-TLSILVEMYTRVGAYDQAFEVYET 343
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG- 487
++ GW+ ++Y+S M RVE+ E +LKEM+ + T+ YAT G
Sbjct: 344 LKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGM 403
Query: 488 ---QRRKVNQVLGLMCK 501
RR ++V+ L K
Sbjct: 404 VDPARRMFDKVVALNGK 420
>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Vitis vinifera]
Length = 819
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/355 (21%), Positives = 143/355 (40%), Gaps = 57/355 (16%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y K I+ A ++ ++ A +L + + YN ++G + LF ++
Sbjct: 185 YGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEML 244
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAF---QEIKDSNLSPNVFTYNYLIAGYMTA 274
+ ++P+ +TYNTLI + + V +E AF + +K N+ P + T+N L+ G A
Sbjct: 245 -DRRVAPNRITYNTLIDGYCK---VGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRA 300
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
M + + + + M+ +PD TY L G+ GN VD
Sbjct: 301 QMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGN--------------VDA------ 340
Query: 335 RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL------LIRVYAKEDCLEEMEK 388
S+T + E+ R + +L L+ KE +E+ E+
Sbjct: 341 ----------SIT------------LSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEE 378
Query: 389 SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
+ E+ + V IV+ Y + ++K +++ E+ G R Y+S + +
Sbjct: 379 VLKKFLENGLAPVGV-FFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKF 437
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ +EE E +K+M + + +T+ + Y + Q+L M K G
Sbjct: 438 CEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKG 492
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 6/149 (4%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +L +E K L + TYN+L+ Y G K L+ +KK + I P++ TY+ LI
Sbjct: 586 AENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKK-SGIKPTLNTYHRLI 644
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ G+ LV +E +QE+ NL P+ YN LI Y+ K ++ M+A +
Sbjct: 645 AGCGKEGLV-LVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQ 703
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
PD TY L+ G+ G RM K+ LV
Sbjct: 704 PDKMTYNCLILGHFKEG---RMHKVKNLV 729
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 65/129 (50%), Gaps = 4/129 (3%)
Query: 193 YNALL-GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YN L+ G+ + L D + F D I P++VTYN LI+ + V E E
Sbjct: 535 YNMLIDGSCIAGKLKDAFR--FFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASE 592
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
I LS +V TYN LI+GY +A K E+Y+ MK + P NTY L+ G G
Sbjct: 593 ITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAGCGKEG- 651
Query: 312 LPRMEKIYE 320
L +EKIY+
Sbjct: 652 LVLVEKIYQ 660
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 2/150 (1%)
Query: 170 NNVDLAADLFAEAANKHLKTIGTY-NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
N++ A ++ + L +G + N ++ Y G +K + ++ + P+ VT
Sbjct: 371 GNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEA-VGLRPNHVT 429
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN+L+ F + ++ E +++ + + PNV TYN LI GY + ++ + +I + M+
Sbjct: 430 YNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEME 489
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
+ P+ +Y L+ N+ E I
Sbjct: 490 KKGLKPNVISYGCLINCLCKDANILEAEVI 519
>gi|159465707|ref|XP_001691064.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
gi|158279750|gb|EDP05510.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
Length = 630
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYNAL+ AY K +++++ ++ N+ S++TY++LIS + + F E
Sbjct: 210 TYNALISAYGKTMQLGKALEVYQEMLRQ-NMERSVITYSSLISACEKAGQWETALRIFNE 268
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ N PN TYN L+ W K E+++ M A PD TY L+ Y G
Sbjct: 269 MQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVTYTALISAYERGGQ 328
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 109/250 (43%), Gaps = 11/250 (4%)
Query: 98 DLDKVFRVLDEKGSCLFRRHSNGYAFVELMK---QLGSRPRLALEVLNWRRRQAGYGTPM 154
D+D+ +++E R N + F LM + G P LALE+ N R +
Sbjct: 83 DVDRAMELMNEMRQRNIER--NVHTFTALMNVCIKCGKLP-LALEIYNNMRAANCMPNVV 139
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLF 213
T Y + G++ + A + + ++ + TYN L+ A + +++
Sbjct: 140 T---YNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPREALAVY 196
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+ L + +P+ TYN LIS +G+ + + +QE+ N+ +V TY+ LI+
Sbjct: 197 QRLLSDG-YTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISACEK 255
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
A W I+ M+ +P+T TY L+ A G + +++E + H +
Sbjct: 256 AGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVT 315
Query: 334 IRAMICAYSK 343
A+I AY +
Sbjct: 316 YTALISAYER 325
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 106/244 (43%), Gaps = 27/244 (11%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTI 190
++PR AL V R GY TP Y I G+ + A +++ E +++ +++
Sbjct: 187 NQPREALAVYQ-RLLSDGY-TP-NSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSV 243
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TY++L+ A G + +F +++++ N P+ VTYN+L++ + + F+
Sbjct: 244 ITYSSLISACEKAGQWETALRIFNEMQQD-NCVPNTVTYNSLVTACAQGGQWEKATEVFE 302
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
++ +P+V TY LI+ Y W K + + M PD Y ++ +G
Sbjct: 303 QMTAHGCTPDVVTYTALISAYERGGQWQKALQAFGKMCMQGCKPDAIVYNAIIDTLWETG 362
Query: 311 NLPRMEKIYELVKHHVDGKEF---PLIR----------------AMICAYSKCSVTDRIK 351
+ + +L V F P++R AM+C Y C + + IK
Sbjct: 363 IIWAQGRALQLFLTAVQQGHFRQEPVVRRAGRVEVNLHAMTAGVAMVCLY--CWLLE-IK 419
Query: 352 KIEA 355
+I A
Sbjct: 420 RIAA 423
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 117/318 (36%), Gaps = 33/318 (10%)
Query: 204 GLSDKCQSLFRDLKKEANISP-----SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS 258
G + LF L+ SP + +Y IS+ VD E++ N+
Sbjct: 41 GKDRRAMELFDWLRSANERSPLRQLCDVYSYTATISLCIYSQDVDRAMELMNEMRQRNIE 100
Query: 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
NV T+ L+ + EIY M+A MP+ TY L+ Y G R +
Sbjct: 101 RNVHTFTALMNVCIKCGKLPLALEIYNNMRAANCMPNVVTYNTLVDVYGKLGRWERAIHV 160
Query: 319 YELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRV 376
+L+K +G E P++R C++ ++ ++ A+ + + Y P LI
Sbjct: 161 LDLMKQ--EGVE-PVLRTYNTLIIACNMCNQPREALAVYQRLLSDGYTPNSTTYNALISA 217
Query: 377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL 436
Y K + A E + + R +++ +A +K + R+
Sbjct: 218 YGK-------TMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQW-----ETALRI 265
Query: 437 CRSL-----------YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
+ Y+S + A + E+ V ++M + T+ + AY
Sbjct: 266 FNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVTYTALISAYER 325
Query: 486 CGQRRKVNQVLGLMCKNG 503
GQ +K Q G MC G
Sbjct: 326 GGQWQKALQAFGKMCMQG 343
>gi|242050640|ref|XP_002463064.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
gi|241926441|gb|EER99585.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
Length = 558
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
I +YNALLGAY +G+ + F+ LK+ P IV+Y +L++ +GR L +
Sbjct: 364 NIVSYNALLGAYASHGMHTEALETFKLLKQNG-FKPDIVSYTSLLNAYGRSALPEKAREV 422
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
F E++ + PN +YN LI Y +A M + + M+ + PD + LL
Sbjct: 423 FNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLL 477
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 88/403 (21%), Positives = 158/403 (39%), Gaps = 54/403 (13%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
A+ V W + Q Y + Y I+ R N VD A LF E K TYN+
Sbjct: 136 AVHVFRWMKIQENYCA--RNDIYGMMIRLHARHNQVDQARGLFFEMQEWRCKPDTDTYNS 193
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ A+ G ++ D+++ A I PS TYN +I+ G +++ ++
Sbjct: 194 LIHAHARAGQWRWAINIMDDMQRAA-IPPSRTTYNNVINACGAAGNWKKALELCKKMTEN 252
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
+ P++ T+N +++ + + K +++MK+ V PDT T ++
Sbjct: 253 GVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIV------------- 299
Query: 316 EKIYELVKHHVDGKEFPLIRAM-----IC------------AYSKCSVTDRIKKIEALMR 358
I+ LVK + G+ L +M IC +YS C + K A+
Sbjct: 300 --IHCLVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCK---AVFD 354
Query: 359 LIPEKEYRPWLNVL----LIRVYAKE----DCLEEMEKSINDAFEHKTSVTTVRIMRCIV 410
++ + RP N++ L+ YA + LE + + F+ T ++
Sbjct: 355 MMVAEGVRP--NIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYT-----SLL 407
Query: 411 SSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID 470
++Y R +K + + Y++ + Y S ++E S+L EME I
Sbjct: 408 NAYGRSALPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQ 467
Query: 471 CSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
+ + A C Q K+ +L G + A+ S
Sbjct: 468 PDVISISTLLTACGRCRQPTKIGIILAAAKSRGIQLNTVAYNS 510
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YNAL+ AY G+ + SL +++++ I P +++ +TL++ GR +
Sbjct: 437 SYNALIDAYGSAGMLKEAISLLHEMEQDG-IQPDVISISTLLTACGRCRQPTKIGIILAA 495
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
K + N YN I Y++ + K E+Y M+ G V PD TY +L+ G G+
Sbjct: 496 AKSRGIQLNTVAYNSGIGSYLSLGDYKKALELYTSMRTGNVKPDAVTYNILISGSCKLGS 555
Query: 312 L 312
Sbjct: 556 F 556
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/360 (20%), Positives = 145/360 (40%), Gaps = 9/360 (2%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTY 193
R A+ +++ +R A P ++ Y I G N A +L + N + T+
Sbjct: 205 RWAINIMDDMQRAA---IPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITH 261
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
N +L A+ K + F ++ K + ++P T N +I ++ L F ++
Sbjct: 262 NIVLSAFKNGAQYSKAIAYF-EIMKSSKVAPDTCTMNIVIHCLVKVALYGEAIELFNSMR 320
Query: 254 DSN--LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ P+V TY ++ Y + ++ MM A V P+ +Y LL YA G
Sbjct: 321 ERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVAEGVRPNIVSYNALLGAYASHGM 380
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ ++L+K + + +++ AY + ++ ++ +++ MR K + N
Sbjct: 381 HTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKNACKPNKVSYNA 440
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
L I Y L+E +++ + + I ++++ RC K+ + A+S
Sbjct: 441 L-IDAYGSAGMLKEAISLLHEMEQDGIQPDVISI-STLLTACGRCRQPTKIGIILAAAKS 498
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
G +L Y+S + Y S ++ + M + T+ I+ G RK
Sbjct: 499 RGIQLNTVAYNSGIGSYLSLGDYKKALELYTSMRTGNVKPDAVTYNILISGSCKLGSFRK 558
>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
Length = 1563
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/353 (19%), Positives = 143/353 (40%), Gaps = 10/353 (2%)
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNAL 196
L NW +G + E Y + I AG++ DLA L ++++ + T+ L
Sbjct: 1162 LAFFNWATNLEEFGH--SPEPYMEMIDLAGKVRQFDLAWQLIDLMKTRNVEIPVETFTIL 1219
Query: 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256
+ Y+ GL+ + F ++ + P + ++ +IS + ++ F +KD
Sbjct: 1220 VRRYVKAGLAAEAVHAFNRME-DYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKD-R 1277
Query: 257 LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
P+V Y L+ G+ A + E ++ MK + P+ TY +++ SG + R
Sbjct: 1278 FEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAH 1337
Query: 317 KIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIR 375
++ E++ D ++ + K T+++ ++ M+ + N LI
Sbjct: 1338 DVFSEMIDVGCDPNAITF-NNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYN-FLIE 1395
Query: 376 VYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR 435
+ ++D LEE K +N K I + V+ + + R
Sbjct: 1396 SHCRDDNLEEAVKILNSV--KKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCR 1453
Query: 436 LCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
Y+ M M+A ++ + + + KEM+ +I+ + T+ ++ + G
Sbjct: 1454 PNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGH 1506
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 1/188 (0%)
Query: 136 LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA 195
LA E ++ R YG K ++ I + A F ++ + Y +
Sbjct: 1228 LAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFEPDVVVYTS 1287
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ + G + + +F ++K A I P++ TY+ +I R + F E+ D
Sbjct: 1288 LVHGWCRAGNISEAERVFGEMKM-AGIXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDV 1346
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
PN T+N L+ ++ A KV ++Y MK PD TY L+ + NL
Sbjct: 1347 GCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESHCRDDNLEEA 1406
Query: 316 EKIYELVK 323
KI VK
Sbjct: 1407 VKILNSVK 1414
>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
Length = 558
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 2/155 (1%)
Query: 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
+VD A +LF E K ++ + TY++L+ G L D+ E I+P++VT+
Sbjct: 199 HVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI-EKKINPNLVTF 257
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
N LI F + E ++ ++ P++FTYN LI G+ K +++++ M +
Sbjct: 258 NALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVS 317
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
PD +TY L++G+ S + +++ + H
Sbjct: 318 KDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSH 352
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
L +D+ + N +L T +NAL+ A++ G + + L D+ K + I P I TYN+LI
Sbjct: 241 LLSDMIEKKINPNLVT---FNALIDAFVKEGKFVEAEKLHDDMIKRS-IDPDIFTYNSLI 296
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F +D + F+ + + P++ TYN LI G+ + E+++ M ++
Sbjct: 297 NGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLV 356
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYE 320
DT TY L++G H G+ +K+++
Sbjct: 357 GDTVTYTTLIQGLFHDGDCDNAQKVFK 383
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN+L+ + + DK + +F + + P + TYNTLI F + V+ F
Sbjct: 289 IFTYNSLINGFCMHDRLDKAKQMF-EFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELF 347
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E+ L + TY LI G +++++ M + V PD TY +LL G ++
Sbjct: 348 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 407
Query: 310 GNLPRMEKIYE 320
G L + ++++
Sbjct: 408 GKLEKALEVFD 418
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 64/327 (19%), Positives = 125/327 (38%), Gaps = 28/327 (8%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C +R S+ A V+ M ++G RP +T G+ +
Sbjct: 88 GYCHGKRISDAVALVDQMVEMGYRP-----------------DTITFTTLIHGLFLHNKA 130
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
+ D + + + TY ++ G D +L ++ A I +V +
Sbjct: 131 SEAVALVDRMVQRGCQ--PNLVTYGVVVNGLCKRGDIDLAFNLLNKME-AAKIEADVVIF 187
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
NT+I + VD F+E++ + PNV TY+ LI+ + W ++ M
Sbjct: 188 NTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIE 247
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+ P+ T+ L+ + G EK++ +++K +D F ++I + + D
Sbjct: 248 KKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTY-NSLINGF---CMHD 303
Query: 349 RIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIM 406
R+ K + + + K+ P L+ LI+ + K +E+ + + H+ V
Sbjct: 304 RLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFRE-MSHRGLVGDTVTY 362
Query: 407 RCIVSSYFRCNAVDKLANFVKRAESAG 433
++ F D K+ S G
Sbjct: 363 TTLIQGLFHDGDCDNAQKVFKQMVSDG 389
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 22/204 (10%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR 168
KG C +R +G EL +++ R + G +T +G+ G
Sbjct: 332 KGFCKSKRVEDG---TELFREMSHRGLV--------------GDTVTYTTLIQGLFHDGD 374
Query: 169 INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+N A +F + + + I TY+ LL NG +K +F D +++ I I
Sbjct: 375 CDN---AQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVF-DYMQKSEIKLDIY 430
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
Y T+I + VD F + + PNV TYN +I+G + + + + + M
Sbjct: 431 IYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKM 490
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGN 311
K +PD+ TY L+R + G+
Sbjct: 491 KEDGPLPDSGTYNTLIRAHLRDGD 514
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 2/144 (1%)
Query: 170 NNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ +D A +F +K + TYN L+ + + + LFR++ + + VT
Sbjct: 303 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT-VT 361
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y TLI D+ + F+++ + P++ TY+ L+ G K E++ M+
Sbjct: 362 YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQ 421
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNL 312
+ D Y ++ G +G +
Sbjct: 422 KSEIKLDIYIYTTMIEGMCKAGKV 445
Score = 39.7 bits (91), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 5/158 (3%)
Query: 160 TKGIKFAGRINNVDL--AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDL 216
T I G NN L A ++F +K I Y ++ G D LF L
Sbjct: 396 TYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSL 455
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
+ + P++VTYNT+IS L+ A +++K+ P+ TYN LI ++
Sbjct: 456 SLKG-VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGD 514
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
E+ + M++ + D +T + L+ H G L +
Sbjct: 515 KAASAELIREMRSCRFVGDAST-IGLVANMLHDGRLDK 551
>gi|242078445|ref|XP_002443991.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
gi|241940341|gb|EES13486.1| hypothetical protein SORBIDRAFT_07g005470 [Sorghum bicolor]
Length = 602
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 2/155 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ IK G+ + A +F E + ++ T +YN LL A+ +GL D+ ++F+ ++
Sbjct: 318 YSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVDEANTVFKAMR 377
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + P + +Y T++ + ++ E F+ IKD L PNV Y L+ GY
Sbjct: 378 RH-RVEPDLCSYTTMVLAYVNASDMNGAEKFFRRIKDDGLKPNVVVYGTLMKGYSKLNNV 436
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
KV +Y+ M+ V P+ Y ++ + + +
Sbjct: 437 EKVMRVYERMRIQGVEPNQTIYTTIMDAHGRNSDF 471
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 93/187 (49%), Gaps = 7/187 (3%)
Query: 175 AADLFAEAANKH--LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
A LFA+ + + L T+ T+N+L+ + + S++ +++ A + P +V+Y+ L
Sbjct: 267 ARKLFAQMSERKIPLSTV-TFNSLMS---FETDYKEVSSIYDQMQR-AGMKPDVVSYSLL 321
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I +G+ + A F+E+ D+ + P +YN L+ + + + + +++ M+ V
Sbjct: 322 IKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVDEANTVFKAMRRHRV 381
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352
PD +Y ++ Y ++ ++ EK + +K + ++ YSK + +++ +
Sbjct: 382 EPDLCSYTTMVLAYVNASDMNGAEKFFRRIKDDGLKPNVVVYGTLMKGYSKLNNVEKVMR 441
Query: 353 IEALMRL 359
+ MR+
Sbjct: 442 VYERMRI 448
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 76/384 (19%), Positives = 154/384 (40%), Gaps = 66/384 (17%)
Query: 139 EVLNWRR-----RQAGYGTPMTKEEYT-KG-----------IKFAGRINNVDLAADLFAE 181
E +NWRR +AG P+ K + + KG ++F ++ ++ +++
Sbjct: 71 EQMNWRRMMREIEEAGSAVPILKTQRSGKGPLPRDVILGTLVRFK-QLKKWNIVSEILEW 129
Query: 182 AANKHLKTIGTYNALLGAYMYNGLSD--KCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
+H + L+ Y L D + + + + + K+ PS+++ L+ +GR
Sbjct: 130 LRTQHWWDFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKG-YQPSVISQTGLMEAYGRG 188
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM---KAGPVMPDT 296
EA F+ ++ S P+ TY ++ + + + E I++ + K PD
Sbjct: 189 KQYRKAEAVFRRMQTSGPEPSPVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQ 248
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL 356
+ +++ Y +G+ + K++ + ++ PL + + S S K++ ++
Sbjct: 249 KMFHMMIYMYKKAGDYAQARKLFA----QMSERKIPL--STVTFNSLMSFETDYKEVSSI 302
Query: 357 MRLIPEKEYRPWL--NVLLIRVYAK----EDCL---EEM--------EKSIN---DAF-- 394
+ +P + LLI+ Y K E+ L EEM KS N DAF
Sbjct: 303 YDQMQRAGMKPDVVSYSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFAI 362
Query: 395 -----EHKTSVTTVRIMRC---------IVSSYFRCNAVDKLANFVKRAESAGWRLCRSL 440
E T +R R +V +Y + ++ F +R + G + +
Sbjct: 363 SGLVDEANTVFKAMRRHRVEPDLCSYTTMVLAYVNASDMNGAEKFFRRIKDDGLKPNVVV 422
Query: 441 YHSKMVMYASQRRVEEMESVLKEM 464
Y + M Y+ VE++ V + M
Sbjct: 423 YGTLMKGYSKLNNVEKVMRVYERM 446
Score = 41.6 bits (96), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 50/258 (19%), Positives = 99/258 (38%), Gaps = 8/258 (3%)
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L++ +G+L E + + P+V + L+ Y + K E +++ M+
Sbjct: 146 LVTAYGKLGDFSRAERVLKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAEAVFRRMQTSG 205
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTD 348
P TY ++L+ E I+E + + P + MI Y K
Sbjct: 206 PEPSPVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYA 265
Query: 349 RIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC 408
+ +K+ A M E++ P V + + E +E+ SI D + V
Sbjct: 266 QARKLFAQM---SERKI-PLSTVTFNSLMSFETDYKEV-SSIYDQMQRAGMKPDVVSYSL 320
Query: 409 IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK 468
++ +Y + ++ + AG R R Y+ + +A V+E +V K M ++
Sbjct: 321 LIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVDEANTVFKAMRRHR 380
Query: 469 IDCSKKTFWIMYYAYATC 486
++ ++ M AY
Sbjct: 381 VEPDLCSYTTMVLAYVNA 398
>gi|297727717|ref|NP_001176222.1| Os10g0495400 [Oryza sativa Japonica Group]
gi|255679525|dbj|BAH94950.1| Os10g0495400, partial [Oryza sativa Japonica Group]
Length = 438
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 116/265 (43%), Gaps = 9/265 (3%)
Query: 97 DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPM 154
D +D V R + E SC+ + ++ L+K L +R + ALE+L+ G G+P
Sbjct: 148 DAMDIVLRRMTEL-SCM----PDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSPP 202
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLF 213
YT I + + D A + E ++ + + TY++++ A DK +
Sbjct: 203 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAMEVL 262
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+ K + P +TYN+++ + ++++ + PNV TY L+
Sbjct: 263 NTMVKNG-VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCK 321
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
+ +I+ M + PD TY LL+GYA G L M + +L+ + + +
Sbjct: 322 NGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHV 381
Query: 334 IRAMICAYSKCSVTDRIKKIEALMR 358
+ICAY+K D+ + + MR
Sbjct: 382 FNILICAYAKQEKVDQAMLVFSKMR 406
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P +V+Y T+I+ F + D + + E+ D +SPNV TY+ +IA A K E+
Sbjct: 202 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAMEV 261
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI--RAM---I 338
M VMPD TY +L GY SG P+ E I L K DG E ++ R++ +
Sbjct: 262 LNTMVKNGVMPDCMTYNSILHGYCSSGQ-PK-EAIGTLKKMRSDGVEPNVVTYRSLMNYL 319
Query: 339 CAYSKCSVTDRIKKIEALMRLIPE-KEYRPWLNVLLIRVYAKEDCLEEM 386
C +C+ +I L P+ YR L++ YA + L EM
Sbjct: 320 CKNGRCTEARKIFDSMTKRGLEPDIATYRT-----LLQGYATKGALVEM 363
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN++L Y +G + + ++ + + P++VTY +L++ + F
Sbjct: 276 TYNSILHGYCSSGQPKEAIGTLKKMRSDG-VEPNVVTYRSLMNYLCKNGRCTEARKIFDS 334
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ L P++ TY L+ GY T ++ + +M + PD + + +L+ YA
Sbjct: 335 MTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEK 394
Query: 312 LPRMEKIYELVKHH 325
+ + ++ ++ H
Sbjct: 395 VDQAMLVFSKMRQH 408
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 107/265 (40%), Gaps = 24/265 (9%)
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM---KAGPVMPDTNTY 299
D M+ + + + + P+VF+ L+ G + E+ MM + G PD +Y
Sbjct: 148 DAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 207
Query: 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEAL 356
++ G+ G+ +K Y +D + P + ++I A K D+ ++
Sbjct: 208 TTVINGFFKEGD---SDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAMEVLNT 264
Query: 357 M---RLIPE-KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS 412
M ++P+ Y L+ KE + ++K +D E +V T R + +
Sbjct: 265 MVKNGVMPDCMTYNSILHGYCSSGQPKE-AIGTLKKMRSDGVE--PNVVTYRSLMNYLCK 321
Query: 413 YFRCNAVDKLAN-FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC 471
RC K+ + KR R+L YA++ + EM ++L M I
Sbjct: 322 NGRCTEARKIFDSMTKRGLEPDIATYRTLLQG----YATKGALVEMHALLDLMVRNGIQP 377
Query: 472 SKKTFWIMYYAYATCGQRRKVNQVL 496
F I+ AYA ++ KV+Q +
Sbjct: 378 DHHVFNILICAYA---KQEKVDQAM 399
>gi|356528278|ref|XP_003532731.1| PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like
[Glycine max]
Length = 1079
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 130/300 (43%), Gaps = 23/300 (7%)
Query: 184 NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
N L T+ YN + A + G S+F + + ++PSI T+NT+ISV+G+ +D
Sbjct: 782 NLELDTVA-YNTFIKAMLEAGKLHFASSIFEHMIS-SGVAPSIETFNTMISVYGQDQKLD 839
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
F + ++ + TY LI Y A + + +++ M+ G + P +Y +++
Sbjct: 840 RAVEMFNQASSCSVPLDEKTYMNLIGYYGKAGLMLEASQLFSKMQEGGIKPGKVSYNIMI 899
Query: 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
YA++G L EK++ ++ + +++ AY++ + K E + + K
Sbjct: 900 NVYANAGVLHETEKLFHTMQRQGYLPDSFTYLSLVQAYTR---SLNYSKAEETIHAMQSK 956
Query: 364 EYRP---WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420
P N+LL + K + E ++ D V + R +++ Y +C V+
Sbjct: 957 GIPPSCVHFNILL-HAFIKAGLIHEAKRVYEDLSTFGL-VPDLVCHRTMLNGYLKCGYVE 1014
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMVM------YASQRRVEEMESVLKEMENYKIDCSKK 474
+ NF + +C S + +M Y S + + + +L M N I KK
Sbjct: 1015 EGINFFE-------SICESTKSDRFIMSAAVHFYKSAGKGRQAKEILNLMNNMGIPFLKK 1067
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 66/340 (19%), Positives = 135/340 (39%), Gaps = 30/340 (8%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK----TI 190
R + W + Q Y + YT ++ G++ + LA ++F E + +
Sbjct: 177 RQVRDFFAWMKLQLSYRPSVIV--YTIVLRLYGQVGKLKLAEEIFLEMLDVGCEPDEVAC 234
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
GT +L +Y G S + +K E I S+ +N ++S + L + ++
Sbjct: 235 GT---MLCSYARWGRHKAMLSFYSAIK-ERGIILSVAVFNFMMSSLQKKSLHREVVHVWK 290
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
++ + PN FTY I+ ++ + + + M+ V+P+ TY LL+ A SG
Sbjct: 291 DMLGKGVIPNNFTYTVAISSFVKEGLHEDAFKTFDEMRNYGVVPEELTYSLLINLNAKSG 350
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS--------VTDRIKKIEALMRLIPE 362
N ++++YE ++ R +I + C+ D + + ++
Sbjct: 351 NRDEVQRLYEDMR----------FRGIIPSNYTCASLLSLYYKYEDYPRALSLFSEMVRN 400
Query: 363 K-EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
K + LLIR+Y K E+ K+ + +++ +T+ + + + VDK
Sbjct: 401 KISTDEVIYGLLIRIYGKLGLYEDAHKTFEET-KNRGQLTSEKTYLAMAQVHLTSGNVDK 459
Query: 422 LANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL 461
++ +S+ R Y + Y + V E
Sbjct: 460 ALEVIELMKSSNLWFSRFAYIVLLQCYVMKEDVASAEGTF 499
>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 2/155 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I + N++ A + E A H + TY L+ +G D+ ++ +++
Sbjct: 500 YNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEML 559
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ I PSI TYN L++ F V+ + + + + N+ PNV TYN L+ Y
Sbjct: 560 DKG-IKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNM 618
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
EIY+ M + V P+ NTY +L++G+ + N+
Sbjct: 619 KSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNM 653
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 8/155 (5%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+V A +L E NK L+ + TYN+L+ G ++ + +++ + + + T
Sbjct: 476 GDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRT-DVYT 534
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE---EIYQ 285
Y TLI + D QE+ D + P++ TYN L+ G+ M G+VE ++ +
Sbjct: 535 YTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGF---CMSGRVEGGKKLLE 591
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
M V P+ TY L++ Y N+ +IY+
Sbjct: 592 WMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYK 626
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I + D A ++ E +K +K +I TYN L+ + +G + + L +
Sbjct: 535 YTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLL-EWM 593
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E N+ P++VTYN+L+ + + ++ + ++PN TYN LI G+ A
Sbjct: 594 LEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNM 653
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLR 304
+ +Q M + ++Y L+R
Sbjct: 654 KEALYFHQEMIEKGLRLTASSYSALIR 680
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+ ++ + G + LF +++K ++ VT+ LI+ R + + QE+
Sbjct: 360 FTTVISGFCSKGDLAAARRLFEEMQKRG-LAADRVTHTALINGLCRAGELKEADRVLQEM 418
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
D L +V TY LI GY + ++ M V P+ TY L G G++
Sbjct: 419 VDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDV 478
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 106/225 (47%), Gaps = 8/225 (3%)
Query: 102 VFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTK 161
+F + ++G L R N A V+ + G + A E+L + + T T
Sbjct: 451 IFHAMKQQGFALDARAYN--AVVDGFCKSGKVHK-AYEILEEMKEKCVQPTVATYGAIVD 507
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G+ +I+ +D A LF EA +K ++ + Y++L+ + G D+ + ++ K+
Sbjct: 508 GL---AKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG 564
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
++P++ T+N+L+ + ++ FQ +K+ PN +TY+ LI G + K
Sbjct: 565 -LTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKA 623
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
+Q M+ ++P+ TY ++ G A GN+ ++E K +
Sbjct: 624 FVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 668
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
D K + + P IV YN I FG+ VD F E+K L P+ +Y +I A
Sbjct: 104 DEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKA 163
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
G+ EE++ M+A +P Y ++ GY +G R E Y+L++
Sbjct: 164 GRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAG---RFEDAYKLLE 209
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 2/152 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I G++ +D A + E K L + T+N+LL A + ++ F+ +K
Sbjct: 537 YSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMK 596
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E P+ TY+ LI+ R+ + +Q+++ L PNV TY +I+G
Sbjct: 597 -EMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNI 655
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+++ KA +PD ++ L+ G +++
Sbjct: 656 TDAYSLFERFKANGGIPDAASFNALIEGMSNA 687
Score = 45.4 bits (106), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
+ ++ ++N++L D+ SLF +KK+A P+ TYN +I + L L +E
Sbjct: 217 IPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA--EPNSSTYNIIIDM---LCLGGRVE 271
Query: 247 AAFQ---EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP---VMPDTNTYL 300
A++ E++ ++L PN+ T N ++ A K+EE Y++ ++ PD TY
Sbjct: 272 EAYRILDEMEHASLFPNLLTVNIMVDRLCKAR---KLEEAYKIFESASQRGCNPDCVTYC 328
Query: 301 LLLRGYAHSGNLPRMEKIYE 320
L+ G G + +++E
Sbjct: 329 SLIDGLGKKGQVDEAYRLFE 348
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 78/198 (39%), Gaps = 19/198 (9%)
Query: 149 GYGTP-MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALLGAYMYNG 204
GYG P + + A R+++ LA A + LK Y L+GA
Sbjct: 5 GYGLPNQACADLAAALVRARRLDDAVLAV-----AVMRRLKFRPAFSAYTVLIGALAEAR 59
Query: 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264
++ L R ++ E + + TL+ R V A E+K S L P++ Y
Sbjct: 60 RPERALELLRQMQ-EVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLY 118
Query: 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
N I + A + + +KA + PD +Y ++ +G L E+++ ++
Sbjct: 119 NVCIDCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEA 178
Query: 325 HVDGKEFPLIRAMICAYS 342
R++ CAY+
Sbjct: 179 E---------RSVPCAYA 187
>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 741
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 131/290 (45%), Gaps = 31/290 (10%)
Query: 96 VDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMT 155
+DD K+F + EK S + NGY V + Q A E+LN Y
Sbjct: 280 IDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQ-------AREILN----LMPYKNIAA 328
Query: 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRD 215
+ G +GR+ D A ++F++ + ++ +N+++ Y + G +D+ LF++
Sbjct: 329 QTAMINGYLQSGRM---DEANEIFSQIS---VRDSVCWNSMITGYAHCGRTDEALRLFQE 382
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ + +V++NT+I+ + + +D F E+++ N V ++N LI GY+
Sbjct: 383 M-----VCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERN----VVSWNSLITGYVQNG 433
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
++ + + +MK PD T + LR A+ L +++ L G + +
Sbjct: 434 LYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKN 493
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE 385
A++ Y+K + R+ + E + I K+ W + LI YA C +E
Sbjct: 494 AILTMYAK---SGRVPEAENVFAEIKNKDVVSWNS--LIAGYALNGCGKE 538
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 142/336 (42%), Gaps = 45/336 (13%)
Query: 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
RI ++ A +LF +K T+ NAL+ Y L + + LF ++ + ++V
Sbjct: 120 RIGELEKARELFNLLPDKQ-DTV-CRNALIAGYAKKRLFREAKKLFDEM-----LVKNVV 172
Query: 228 TYNTLISVF---GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
++N+++S + G++ L A E NV ++N ++ GY+ G ++ +
Sbjct: 173 SWNSILSGYTKNGKMQLGLQFFEAMGE-------RNVVSWNLMVDGYVGV---GDLDSAW 222
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC 344
K P P+ +++ +L G+AH G + ++ + + K AMI AY +
Sbjct: 223 MFFKKIPT-PNVVSWVTMLSGFAHYGRMTEARNLF----NEMPTKNLVSWNAMIGAYVRE 277
Query: 345 SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR 404
+ D K L +PEK+ W +I Y + L + + +N + T
Sbjct: 278 NQIDDAYK---LFMEMPEKDSVSW--TAMINGYVRVGKLLQAREILNLMPYKNIAAQT-- 330
Query: 405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
+++ Y + +D+ AN + S +C ++S + YA R +E + +EM
Sbjct: 331 ---AMINGYLQSGRMDE-ANEIFSQISVRDSVC---WNSMITGYAHCGRTDEALRLFQEM 383
Query: 465 ENYKIDCSKKTFW-IMYYAYATCGQRRKVNQVLGLM 499
C W M AYA GQ K ++ M
Sbjct: 384 V-----CKDMVSWNTMIAAYAQAGQMDKALEMFNEM 414
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 41/173 (23%)
Query: 172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE------------ 219
+D A ++F E ++ + ++N+L+ Y+ NGL + + F +K++
Sbjct: 404 MDKALEMFNEMQERN---VVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCC 460
Query: 220 ----ANISP------------------SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
AN++ + N +++++ + V E F EIK+ +
Sbjct: 461 LRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKD- 519
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
V ++N LIAGY + E++++M ++PD T+ LL H G
Sbjct: 520 ---VVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGG 569
>gi|225431703|ref|XP_002264696.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial [Vitis vinifera]
gi|296088528|emb|CBI37519.3| unnamed protein product [Vitis vinifera]
Length = 525
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 7/224 (3%)
Query: 90 DELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAG 149
D + D +KV + +KG Y+ V + +P L L+ L + +
Sbjct: 277 DRFERTIRDAEKVLDEMRQKG---IEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGI 333
Query: 150 YGTPMTKEEYTKGIKFAGRINNVD-LAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDK 208
+ T T K + GR+ + + L +D+ + + + TYN Y SD
Sbjct: 334 WPTVATYTSVVKCLCSCGRLEDAEELVSDMVKDGVSP---SAATYNCFFKEYRGRKDSDN 390
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
L+R +K+E + P + TYN L+ +F +L ++ ++ + ++K S P++ +Y LI
Sbjct: 391 ALRLYRKMKEEYSCLPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLI 450
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
G W + + M +P T+ L RG S L
Sbjct: 451 HGLCEKQKWKEACHFFVEMIEKGYLPQKITFETLYRGLIQSDML 494
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 27/223 (12%)
Query: 101 KVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRP--RLALEVLNWRRRQAGYGTPMTKEE 158
+ R D+ SC + ++ F L+ L +LA ++ N R+ + M
Sbjct: 170 QAVRAFDDM-SCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQRKFKFEANAKM---- 224
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGL--------SDKC 209
YT I +IN V +A L E + ++ + TYN LL NG+ D+
Sbjct: 225 YTILIYGWCKINRVSIAERLLGEMVERGIEANVVTYNVLL-----NGICRRASLHPDDRF 279
Query: 210 QSLFRDLKK------EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
+ RD +K + I P + +Y+ +I V+ R + + +KD + P V T
Sbjct: 280 ERTIRDAEKVLDEMRQKGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVAT 339
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
Y ++ + EE+ M V P TY + Y
Sbjct: 340 YTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEY 382
>gi|302787078|ref|XP_002975309.1| hypothetical protein SELMODRAFT_442798 [Selaginella moellendorffii]
gi|300156883|gb|EFJ23510.1| hypothetical protein SELMODRAFT_442798 [Selaginella moellendorffii]
Length = 914
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/362 (21%), Positives = 143/362 (39%), Gaps = 22/362 (6%)
Query: 167 GRINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNG---LSDKCQSLFRDLKKEANI 222
G+ V A DLF ++ TY+ L+ +Y+ +G D+ L+ +++
Sbjct: 307 GQTGKVGRARDLFDIIIQYAYVPKESTYSTLIKSYLQDGRYKYVDEAWKLYNRMREFGGY 366
Query: 223 SPSIVTYNTLISVF-----GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P + ++L L D A F I++ NL Y L+ +
Sbjct: 367 EPPAIVKHSLFKFLTESGKASLRWADRANAVFNSIRECNLPCTTEMYETLVIIHAVKGDE 426
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+V+ + MK+ + + L+R + SGN + EK++E +K + ++ A+
Sbjct: 427 ARVQFLVDDMKSQGLELSPLIFGALIRVCSKSGNYVKAEKLFEQLKETQEELDWHYYIAL 486
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRP-----WLNVLLIRVYAKEDCLEEMEKSIND 392
+ AY K + + M L E E P L ++I V A D +E E+ +
Sbjct: 487 MEAYGKAGLPGKA------MDLFRETENSPTFPKFALFKIIIEVMASNDQVEATEELLGK 540
Query: 393 AFEHKTSVTTVR-IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451
T++ ++ Y R DK+ + G R R YH ++ +
Sbjct: 541 LHPSLYKFQTLQSAFNAVMEMYSRLGKFDKVDSTYAYMSKHGCRPNRESYHLQLQAFIDS 600
Query: 452 RRVEEMESVLKEMENYK-IDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNA 510
R+++ E + M K + KT IM AY ++ KV ++ L+ ++ VP
Sbjct: 601 GRLDKAEELYNNMIERKCLRPDFKTHGIMLGAYGKADRKDKVKEIFKLLTEHRQPVPEEF 660
Query: 511 FP 512
P
Sbjct: 661 QP 662
>gi|224076667|ref|XP_002304978.1| predicted protein [Populus trichocarpa]
gi|222847942|gb|EEE85489.1| predicted protein [Populus trichocarpa]
Length = 373
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 105/221 (47%), Gaps = 13/221 (5%)
Query: 111 SCLFRRHSNGYAFVELMKQLGSRPRLAL--EVLNWRRRQAGYGTPMTKEEYTKG-IKFAG 167
S FR + YA +K+L RL++ E+L+ ++ MT E +T I G
Sbjct: 49 SSSFRSRYDIYAIT--VKRLIKYNRLSMINEILDHQKN----FPDMTNETFTAHLIYLYG 102
Query: 168 RINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+ D A LF E + K +T+ ++NALL A + D+ + L D + E I+ +
Sbjct: 103 KAGMFDDARKLFDEMPDLKCPRTVFSFNALLLACINARRFDEIKKLLADFRSELGITFDV 162
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
V+Y+ I+ F ++ + E F E+ S++ PN+ T+N L+ G+ + E I+
Sbjct: 163 VSYSIAINGFCKMGDLVSAEMVFDEMIKSDVEPNLITFNTLLNGFYLNGKFADGERIWSR 222
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
M V+PD +Y L A RM++ E+V+ D
Sbjct: 223 MVEMNVVPDVRSYNAKLHALALEN---RMKEAIEVVEEMRD 260
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ- 250
T+N LL + NG + ++ + E N+ P + +YN + L L + M+ A +
Sbjct: 199 TFNTLLNGFYLNGKFADGERIWSRMV-EMNVVPDVRSYNAKLHA---LALENRMKEAIEV 254
Query: 251 --EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
E++D L +VF++N LI G++ + ++ Y M+ P+ T+ L+
Sbjct: 255 VEEMRDKGLELDVFSFNALIRGFLNGEDLEEAKQWYGEMRRHGCEPNRVTFQFLIPFLCE 314
Query: 309 SGNL 312
G++
Sbjct: 315 KGDV 318
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic; AltName: Full=Protein PROTON GRADIENT
REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 6/168 (3%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G+ D A LF + ++ + TY+ L+ G D+ F++LK E+ ++P
Sbjct: 937 GKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELK-ESGLNPD 995
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDS-NLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
+V YN +I+ G+ ++ F E+K S ++P+++TYN LI A M + +IY
Sbjct: 996 VVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIY 1055
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
++ + P+ T+ L+RGY+ SG + E Y + + V G P
Sbjct: 1056 NEIQRAGLEPNVFTFNALIRGYSLSG---KPEHAYAVYQTMVTGGFSP 1100
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
LF ++K I+P + TYN+LI G +V+ + EI+ + L PNVFT+N LI GY
Sbjct: 1018 LFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGY 1077
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
+ +YQ M G P+T TY
Sbjct: 1078 SLSGKPEHAYAVYQTMVTGGFSPNTGTY 1105
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 79/356 (22%), Positives = 144/356 (40%), Gaps = 27/356 (7%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219
I+++ + NNV A LF E K L + TYN L+G + + + Q +F +K
Sbjct: 756 IRYSCKHNNVSGARTLF-EKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKST 814
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
I P + TYN L+ +G+ +D + ++E+ N T+N +I+G + A G
Sbjct: 815 GCI-PDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKA---GN 870
Query: 280 VEEI----YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
V++ Y +M P TY L+ G + SG L ++++E + + +
Sbjct: 871 VDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYN 930
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE 395
+I + K D AL + + ++ RP L + V DCL M +++
Sbjct: 931 ILINGFGKAGEADAAC---ALFKRMVKEGVRPDLKTYSVLV----DCLC-MVGRVDEGLH 982
Query: 396 HKTSVTTVRIMRCIVSSYFRCNAVDK-------LANFVKRAESAGWRLCRSLYHSKMVMY 448
+ + + +V N + K L F + S G Y+S ++
Sbjct: 983 YFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNL 1042
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
VEE + E++ ++ + TF + Y+ G+ V M G+
Sbjct: 1043 GIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGF 1098
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/320 (19%), Positives = 134/320 (41%), Gaps = 13/320 (4%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ TY++L+ D L ++++ + P++ T+ I V GR ++
Sbjct: 222 SLQTYSSLMVGLGKRRDIDSVMGLLKEMET-LGLKPNVYTFTICIRVLGRAGKINEAYEI 280
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ + D P+V TY LI TA +E+++ MK G PD TY+ LL ++
Sbjct: 281 LKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSD 340
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEAL--MR---LIPEK 363
+ +L +++ + ++ DG ++ I + C + + + L MR ++P
Sbjct: 341 NRDLDSVKQFWSEMEK--DGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNL 398
Query: 364 EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLA 423
L L+RV+ +D L E+ ++ T+ T + + S +A++
Sbjct: 399 HTYNTLICGLLRVHRLDDAL-ELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFE 457
Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
+ + C + +S A R E + + +++ + T+ +M Y
Sbjct: 458 KMKTKGIAPNIVACNASLYS----LAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCY 513
Query: 484 ATCGQRRKVNQVLGLMCKNG 503
+ G+ + ++L M +NG
Sbjct: 514 SKVGEIDEAIKLLSEMMENG 533
Score = 46.2 bits (108), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 187 LKTIGTYNALLGAYMYNGL---------SDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
L+ + + +L AY YNGL + ++R + E PS+ TY++L+ G
Sbjct: 176 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEG-FRPSLQTYSSLMVGLG 234
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN 297
+ +D + +E++ L PNV+T+ I A + EI + M PD
Sbjct: 235 KRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVV 294
Query: 298 TYLLLLRGYAHSGNLPRMEKIYELVK 323
TY +L+ + L ++++E +K
Sbjct: 295 TYTVLIDALCTARKLDCAKEVFEKMK 320
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 8/174 (4%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G T Y I + G+ + A + F + K + I NA L + G +
Sbjct: 428 GVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREA 487
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+ +F LK + + P VTYN ++ + ++ +D E+ ++ P+V N LI
Sbjct: 488 KQIFYGLK-DIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLIN 546
Query: 270 GYMTAWMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
T + +V+E ++M MK + P TY LL G +G + +++E
Sbjct: 547 ---TLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFE 597
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 4/156 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y +K ++ +D A L +E N + N+L+ D+ +F +K
Sbjct: 506 YNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMK 565
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM-TAWM 276
E + P++VTYNTL++ G+ + F+ + PN T+N L +
Sbjct: 566 -EMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEV 624
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
++ +++MM G V PD TY ++ G +G +
Sbjct: 625 TLALKMLFKMMDMGCV-PDVFTYNTIIFGLVKNGQV 659
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
L + TYN L+ + D LF +++ + P+ TY I +G+ D +
Sbjct: 395 LPNLHTYNTLICGLLRVHRLDDALELFGNME-SLGVKPTAYTYIVFIDYYGKS--GDSVS 451
Query: 247 A--AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304
A F+++K ++PN+ N + A + ++I+ +K ++PD+ TY ++++
Sbjct: 452 ALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMK 511
Query: 305 GYAHSGNLPRMEKI 318
Y+ G + K+
Sbjct: 512 CYSKVGEIDEAIKL 525
>gi|225424178|ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial [Vitis vinifera]
Length = 531
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 105/270 (38%), Gaps = 38/270 (14%)
Query: 124 VELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA 183
+E++K+L + +AL W +Q G+ + E Y I+ G+I + +L +
Sbjct: 115 LEVLKKLSNSGVIALSFFRWAEKQKGF--KYSTENYNALIEALGKIKQFKMIWNLVNDMR 172
Query: 184 NKHLKT-----------------------------------IGTYNALLGAYMYNGLSDK 208
+K L T + +N LL A + ++
Sbjct: 173 SKGLLTQETFALISRRYARARKVKEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVER 232
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
Q +F D K+ P I +Y L+ +G+ + ++ ++E+KD P+ TY LI
Sbjct: 233 AQEVF-DKMKDRKFRPDIKSYTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILI 291
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
+ A + E++ M+A MP + Y L+ G L + +E K
Sbjct: 292 NAHCKARRYDAAVELFHKMEANKCMPTPHIYCTLINGLGSERRLTEALQFFERSKASGFT 351
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
E P A++ +Y + D +I MR
Sbjct: 352 PEAPTYNAVVGSYCQSMRMDDAYRIVDEMR 381
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Query: 173 DLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDK---CQSL-FRDLKKEANISPSIV 227
D A +LF + ANK + T Y L+ NGL + ++L F + K + +P
Sbjct: 301 DAAVELFHKMEANKCMPTPHIYCTLI-----NGLGSERRLTEALQFFERSKASGFTPEAP 355
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TYN ++ + + + +D E++ + P TY+ ++ + A + ++Q M
Sbjct: 356 TYNAVVGSYCQSMRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQGM 415
Query: 288 KAGP-VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+ P P +TY +++R + + + ++++ +K
Sbjct: 416 SSEPGCEPSVSTYEIVVRMFCNEERVDMALRVWDEMK 452
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEAN-ISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TY L+ A+ D LF K EAN P+ Y TLI+ G + F+
Sbjct: 286 TYGILINAHCKARRYDAAVELFH--KMEANKCMPTPHIYCTLINGLGSERRLTEALQFFE 343
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
K S +P TYN ++ Y + I M+ V P T TY ++L
Sbjct: 344 RSKASGFTPEAPTYNAVVGSYCQSMRMDDAYRIVDEMRKCGVGPQTRTYDIIL 396
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 105/223 (47%), Gaps = 8/223 (3%)
Query: 102 VFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTK 161
+F + ++G L R N A V+ + G + A E+L + + T T
Sbjct: 585 IFHAMKQQGFALDARAYN--AVVDGFCKSGKVHK-AYEILEEMKEKCVQPTVATYGAIVD 641
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G+ +I+ +D A LF EA +K ++ + Y++L+ + G D+ + ++ K+
Sbjct: 642 GL---AKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG 698
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
++P++ T+N+L+ + ++ FQ +K+ PN +TY+ LI G + K
Sbjct: 699 -LTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKA 757
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+Q M+ ++P+ TY ++ G A GN+ ++E K
Sbjct: 758 FVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFK 800
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
D K + + P IV YN I FG+ VD F E+K L P+ +Y +I A
Sbjct: 238 DEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKA 297
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
G+ EE++ M+A +P Y ++ GY +G R E Y+L++
Sbjct: 298 GRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAG---RFEDAYKLLE 343
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I G++ +D A + E K L + T+N+LL A + ++ F+ +K
Sbjct: 671 YSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMK 730
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E P+ TY+ LI+ R+ + +Q+++ L PNV TY +I+G
Sbjct: 731 -EMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNI 789
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+++ KA +PD ++ L+ G +++ +++E
Sbjct: 790 TDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFE 832
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
+ ++ ++N++L D+ SLF +KK+A P+ TYN +I + L L +E
Sbjct: 351 IPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAE--PNSSTYNIIIDM---LCLGGRVE 405
Query: 247 AAFQ---EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP---VMPDTNTYL 300
A++ E++ ++L PN+ T N ++ A K+EE Y++ ++ PD TY
Sbjct: 406 EAYRILDEMEHASLFPNLLTVNIMVDRLCKAR---KLEEAYKIFESASQRGCNPDCVTYC 462
Query: 301 LLLRGYAHSGNLPRMEKIYE 320
L+ G G + +++E
Sbjct: 463 SLIDGLGKKGQVDEAYRLFE 482
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 19/198 (9%)
Query: 149 GYGTP-MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALLGAYMYNG 204
GYG P + A R+++ LA A + LK Y L+GA
Sbjct: 139 GYGLPNQACAHLAAALVRARRLDDAVLAV-----AVMRRLKFRPAFSAYTVLIGALAEAR 193
Query: 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264
++ L R ++ E + + TL+ R V A E+K S L P++ Y
Sbjct: 194 RPERALELLRQMQ-EVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLY 252
Query: 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
N I + A + + +KA + PD +Y ++ +G L E+++ ++
Sbjct: 253 NVCIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEA 312
Query: 325 HVDGKEFPLIRAMICAYS 342
R++ CAY+
Sbjct: 313 E---------RSVPCAYA 321
>gi|344288831|ref|XP_003416150.1| PREDICTED: leucine-rich PPR motif-containing protein, mitochondrial
[Loxodonta africana]
Length = 1395
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 144/324 (44%), Gaps = 18/324 (5%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I YNALL Y+ N ++ EANI P+ VTY LI+ + + ++
Sbjct: 164 ISHYNALLKVYLQNEYKFSPTDFLAKME-EANIQPNRVTYQRLIAAYCNVGDIEGASKIL 222
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+K +L ++ L+ G+ A E I +MK + P +TYL LL YA
Sbjct: 223 GFMKSKDLPVTEAVFSALVTGHARAGDMENAENIITVMKEAGIEPGPDTYLALLNAYAEK 282
Query: 310 GNLPRMEKIYELV-KHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP- 367
G++ R+++ E V K + + L++ +I A+SK + +I L ++ E Y P
Sbjct: 283 GDIDRVKQTLEKVKKSDIYLMDRDLLQ-VIFAFSKAGYPQYVSEI--LEKMTYEGRYIPD 339
Query: 368 WLNVLLIRVYAK-ED-CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
+N++L+ V K ED LE + E+ + + + C+ + +KL ++
Sbjct: 340 AMNLILLLVTEKMEDTALEILLACPAPRKENLSDFGSFFLQHCVTMN----TPAEKLQDY 395
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
K+ ++A C + + S R+ + +++++ ++ FW + +
Sbjct: 396 CKKLKAAQMHSCPLQFTLHCAL--SARKADLAKALMEALKEEDFPVRAHYFWPLLAGH-- 451
Query: 486 CGQRRKVNQVLGLMCKNGYDVPVN 509
Q+ K Q + + K ++V +N
Sbjct: 452 --QKEKNVQGIIEVLKGMHEVGIN 473
>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 680
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/373 (20%), Positives = 149/373 (39%), Gaps = 13/373 (3%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVD--LAADLFAEAANKHLKTIG-TY 193
AL +++ RR GY Y+ I++ R N +D + L+AE ++ G
Sbjct: 188 ALNLMSKMRRD-GYQPDFVN--YSSIIQYLTRSNKIDSPILQKLYAEIETDKIEIDGHLM 244
Query: 194 NALLGAYMYNGLSDKCQSL-FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
N ++ + G D +++ F + + ++P T +I G EA F+EI
Sbjct: 245 NDIIVGFSKAG--DPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEI 302
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+++ L P YN L+ GY+ E + M+ V PD TY LL+ YAH+G
Sbjct: 303 RENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRW 362
Query: 313 PRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ E+ +V + R ++ Y + ++ M+ + R + NV
Sbjct: 363 ESARIVLKEMEASNVQPNSYVFSR-ILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNV 421
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
+I + K +CL+ + V ++ + + D +
Sbjct: 422 -MIDTFGKYNCLDHAMATFERMLSEGIPPDIV-TWNTLIDCHCKSGRHDMAEELFSEMQQ 479
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
G+ C + Y+ + Q+R E++ + L +M++ + + T+ + Y G+
Sbjct: 480 RGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSD 539
Query: 492 VNQVLGLMCKNGY 504
+ L ++ G+
Sbjct: 540 AIECLEVLKSTGF 552
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YNAL+ AY GLS+ + FR + E ++PS++ N+LI+ FG A Q +
Sbjct: 559 YNALINAYAQRGLSELAVNAFRLMTTEG-LTPSLLALNSLINAFGEDRRDAEAFAVLQYM 617
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
K++N+ P+V TY L+ + + KV +Y+ M A PD
Sbjct: 618 KENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEMVASGCTPD 660
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 2/153 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I G+ N +D A F ++ + I T+N L+ + +G D + LF +++
Sbjct: 419 YNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQ 478
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ SP I TYN +I+ G + + A +++ L PN TY L+ Y + +
Sbjct: 479 QRG-YSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRF 537
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E +++K+ P + Y L+ YA G
Sbjct: 538 SDAIECLEVLKSTGFKPTSTMYNALINAYAQRG 570
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 15/218 (6%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
+ + + T TYNAL+GA NG +K +L ++++ P V Y+++I R +
Sbjct: 162 SQRQVLTPLTYNALIGACARNGDVEKALNLMSKMRRDG-YQPDFVNYSSIIQYLTRSNKI 220
Query: 243 DH--MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
D ++ + EI+ + + N +I G+ A + M ++ + P +T +
Sbjct: 221 DSPILQKLYAEIETDKIEIDGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLV 280
Query: 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI 360
++ +SG E ++E ++ +G E P RA T +K E ++ +
Sbjct: 281 AVILALGNSGRTHEAEALFEEIRE--NGLE-PRTRAYNALLKGYVRTGSLKDAEFVVSEM 337
Query: 361 PEKEYRPWLNV--LLIRVYAKED-------CLEEMEKS 389
+ +P LLI VYA L+EME S
Sbjct: 338 EKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEAS 375
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
Query: 192 TYNALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TY L+ Y +G SD + L ++ K P+ YN LI+ + + L + AF+
Sbjct: 523 TYTTLVDVYGKSGRFSDAIECL--EVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFR 580
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ L+P++ N LI + + + Q MK + PD TY L++
Sbjct: 581 LMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVE 640
Query: 311 NLPRMEKIYE 320
++ +YE
Sbjct: 641 KFQKVPAVYE 650
>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 528
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 117/310 (37%), Gaps = 42/310 (13%)
Query: 36 FTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSE-------------TLTYPD-ARVRKDL 81
F+L +P+HS + D +T V P+LV + E L++ + A R
Sbjct: 79 FSLPNTPSHSLSLDFSHFSTSPVSPSLVSHVIEKCAAVRHGIPFFQALSFFNWATSRPGF 138
Query: 82 TQTVSALRD--ELLANVDDLDKVFRVLD-----------EKGSCLFRRHSNGYAFVELMK 128
T + +L V + D ++V+D E S L RR+
Sbjct: 139 THHPEPYNEMIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSILIRRYV---------- 188
Query: 129 QLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK 188
R LA E ++ R Y K ++ I R A F +K
Sbjct: 189 ----RAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSLKDKFEP 244
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+ Y L+ + G + + +F ++K A P++ TY +I R +
Sbjct: 245 DVIVYTNLVRGWCRAGNIPEAERVFTEMKV-AGCMPNVYTYTIVIDALCRCGQITRAHDV 303
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F E+ D PN T+N L+ ++ A KV ++Y MK PDT TY L+ +
Sbjct: 304 FAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHCK 363
Query: 309 SGNLPRMEKI 318
GNL K+
Sbjct: 364 DGNLDEALKV 373
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 40/223 (17%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
AL NW + G+ E Y + I AG++ N DL + ++++ +I T++
Sbjct: 125 ALSFFNWATSRPGFT--HHPEPYNEMIDLAGKVRNFDLGWQVIDLMKARNVEISIETFSI 182
Query: 196 LLGAYMYNGLSDKC-----------------------------------QSLFRDLKKEA 220
L+ Y+ GL+ + QS F LK +
Sbjct: 183 LIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSLKDK- 241
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
P ++ Y L+ + R + E F E+K + PNV+TY +I +
Sbjct: 242 -FEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRA 300
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+++ M P++ T+ LLR + +G ++ ++Y +K
Sbjct: 301 HDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMK 343
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 81/179 (45%), Gaps = 7/179 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ ++ +G D+ + + K+ SP+ T+N L +L V+ + +
Sbjct: 353 TYNFLIESHCKDGNLDEALKVLNSMVKKG-CSPNASTFNGLFGSIAKLRDVNGAHRLYAK 411
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K+ N TYN L+ ++ V ++ + M V P+ NTY +L+ Y G+
Sbjct: 412 MKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVLIAMYCGMGH 471
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY--RP 367
K + E+V+ P+ ++ K ++KK E L+ ++ ++ + RP
Sbjct: 472 WNNAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAG---QLKKHEELVAVMVDRGFATRP 527
>gi|428179291|gb|EKX48163.1| hypothetical protein GUITHDRAFT_86178 [Guillardia theta CCMP2712]
Length = 557
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/354 (21%), Positives = 148/354 (41%), Gaps = 17/354 (4%)
Query: 159 YTKGIKFAGRINNVDLAAD-LFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y IK G++ ++ A + L +I NALL A + G Q+LF L+
Sbjct: 36 YGTLIKAYGQLGQLEAAFETLNGMVKGGPAPSIRVINALLQACVRAGNLTAAQTLFSSLR 95
Query: 218 KEA---NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
++ P+ V++N +++ + R V+ E++ + P+ TY L+ + A
Sbjct: 96 GAGLCISLQPTGVSFNIMVNAYARRRKVEKAFKMLLEMRRAGCKPDQITYTTLVKACVAA 155
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
+ + E + M+ + P+ +Y +L G A + ++ L + DG E L+
Sbjct: 156 GQFDRAERLLGEMEELGIPPNAYSYNCILYGLAQKLQWGKATRL--LQRMEEDGVEANLL 213
Query: 335 RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSIND 392
C + C R+K+ AL + K P L V+ ++ YA + ++E + I
Sbjct: 214 SYSYCILA-CVRARRMKEASALFEEMRRKGIVPNLFVMNTMMSGYAAKGMVDEAQ-GIMK 271
Query: 393 AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452
+ ++ ++ DK ++ E G + + + Y S
Sbjct: 272 LLQDMRIKANAMTFSSLIEAFINAGYADKAVEVKRKMEELGVEVDMVVSTQMLKAYTSMG 331
Query: 453 RVEE----MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502
+VEE +E ++KE + S +TF + + + G + + +VLGLM ++
Sbjct: 332 KVEEAIEKLEEIVKEASS---PVSSRTFDSVLFQCSKRGSKEEALRVLGLMLRS 382
>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
Length = 975
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 23/219 (10%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPR------------------LALEVLNWRRRQAGYG 151
G CL + + ++ M + G +P LA+E+L R+
Sbjct: 300 GLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELL---RKMEERN 356
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQ 210
+ +Y+ I + ++D A +LF E K + T I TYN L+G + G D
Sbjct: 357 IKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGA 416
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
L RD+ K I+P++VT++ LI F + + E +E+ ++P+ TY LI G
Sbjct: 417 KLLRDMIKR-KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDG 475
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ K ++ +M + P+ T+ +L+ GY +
Sbjct: 476 FCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKA 514
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 100/248 (40%), Gaps = 20/248 (8%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G CL R S V+ M ++G +P L +T G+ +G+
Sbjct: 265 GLCLEGRVSEALELVDRMVEMGHKPDL-----------------ITINTLVNGLCLSGKE 307
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
L D E + TY +L +G + L R ++ E NI V Y
Sbjct: 308 AEAMLLIDKMVEYGCQ--PNAVTYGPVLNVMCKSGQTALAMELLRKME-ERNIKLDAVKY 364
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
+ +I + +D+ F E++ ++ N+ TYN LI G+ A W ++ + M
Sbjct: 365 SIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIK 424
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
+ P+ T+ +L+ + G L E++++ + H + ++I + K + D+
Sbjct: 425 RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 484
Query: 350 IKKIEALM 357
++ LM
Sbjct: 485 ANQMVDLM 492
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 5/198 (2%)
Query: 145 RRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYN 203
R+ + G Y I+ + +++A +LF E ++ + I TY LL N
Sbjct: 525 RKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDN 584
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G S+K +F ++K + + I YN +I VD F + + P V T
Sbjct: 585 GESEKALEIFEKIEK-SKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKT 643
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
YN +I G + E +++ M+ PD TY +L+R + G+ + K+ E +K
Sbjct: 644 YNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELK 703
Query: 324 H---HVDGKEFPLIRAMI 338
VD ++ M+
Sbjct: 704 RCGFSVDASTIKMVIDML 721
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 4/155 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY +L+ + DK + DL P+I T+N LI+ + + +D F++
Sbjct: 468 TYTSLIDGFCKENHLDKANQMV-DLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRK 526
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + + TYN LI G+ +E++Q M + V P+ TY +LL G +G
Sbjct: 527 MSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE 586
Query: 312 LPRMEKIYELV---KHHVDGKEFPLIRAMICAYSK 343
+ +I+E + K +D + +I +C SK
Sbjct: 587 SEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK 621
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 97/230 (42%), Gaps = 23/230 (10%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I + N++D A + +K I T+N L+ Y D LFR +
Sbjct: 469 YTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMS 528
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ + VTYNTLI F L ++ + FQE+ + PN+ TY L+ G
Sbjct: 529 LRGVVADT-VTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGES 587
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL--------VKHHVDGK 329
K EI++ ++ + D Y +++ G N +++ ++L VK V K
Sbjct: 588 EKALEIFEKIEKSKMELDIGIYNIIIHGMC---NASKVDDAWDLFCSLPLKGVKPGV--K 642
Query: 330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVY 377
+ ++ +C S + E L R + E + P W +LIR +
Sbjct: 643 TYNIMIGGLCKKGPLS------EAELLFRKMEEDGHAPDGWTYNILIRAH 686
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +LF E + I TY++L+ + D+ +F DL +V+YNTLI
Sbjct: 382 AKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMF-DLMVSKGCLADVVSYNTLI 440
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F + V+ F+E+ L N TYN LI G+ A K +E + M +
Sbjct: 441 NGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGIS 500
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYE 320
PD TY +LL G +G L + I+E
Sbjct: 501 PDIWTYNILLGGLCDNGELEKALVIFE 527
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A L+ E + + +I TY++L+ + + D+ + +F + + P +VTYNTLI
Sbjct: 959 AEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF-EFMVSKHCFPDVVTYNTLI 1017
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
F + V+ F+E+ L N TYN LI G A +EI++ M + V
Sbjct: 1018 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVP 1077
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
P+ TY LL G +G L + ++E ++
Sbjct: 1078 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 1107
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 8/193 (4%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIG 191
R +EV ++ G +T +G+ AG + D+A ++F E + + I
Sbjct: 1025 RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG---DCDMAQEIFKEMVSDGVPPNIM 1081
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN LL NG +K +F L++ + + P+I TYN +I + V+ F
Sbjct: 1082 TYNTLLDGLCKNGKLEKAMVVFEYLQR-SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCN 1140
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + P+V YN +I+G+ + + +++ MK +P++ Y L+R G+
Sbjct: 1141 LSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGD 1200
Query: 312 LPRMEKIYELVKH 324
E EL+K
Sbjct: 1201 ---REASAELIKE 1210
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 119/300 (39%), Gaps = 9/300 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ G +D +L ++ + + P ++ YNT+I + +D F+E
Sbjct: 837 TYGVVVNGLCKRGDTDLAFNLLNKME-QGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKE 895
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + PNV TY+ LI+ W + M + PD T+ L+ + G
Sbjct: 896 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 955
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
L EK+Y E+VK +D P I + + DR+ + + + + K P +
Sbjct: 956 LVEAEKLYDEMVKRSID----PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVV 1011
Query: 371 V--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
LI+ + K +EE + + + TV ++ F+ D K
Sbjct: 1012 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV-TYNILIQGLFQAGDCDMAQEIFKE 1070
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
S G Y++ + ++E+ V + ++ K++ + T+ IM G+
Sbjct: 1071 MVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 1130
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 112/287 (39%), Gaps = 15/287 (5%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E P IV YN +I + V+ F+EI+ + PNV TY L+ G + W
Sbjct: 286 EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWS 345
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAM 337
+ M + P+ TY LL + +G + ++++ E+V+ +D P I
Sbjct: 346 DAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSID----PDIVTY 401
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDA 393
+ + DRI + + L+ K +V+ LI + K +E+ K +
Sbjct: 402 SSLINGLCLHDRIDEANQMFDLMVSKGC--LADVVSYNTLINGFCKAKRVEDGMKLFRE- 458
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
+ V+ ++ +F+ VDK F + + G Y+ +
Sbjct: 459 MSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE 518
Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
+E+ + ++M+ ++D T+ + G KV + L C
Sbjct: 519 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTG---KVEEAWSLFC 562
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+VD A + F++ + I TYN LLG NG +K +F D++K + IVT
Sbjct: 482 GDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR-EMDLDIVT 540
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y T+I + V+ + F + L P++ TY +++G T + +VE +Y MK
Sbjct: 541 YTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMK 600
Query: 289 AGPVMPDTNT 298
+M + T
Sbjct: 601 QEGLMKNDCT 610
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 14/161 (8%)
Query: 172 VDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
V+ LF E + + L TYN L+ + G DK Q F + ISP I TYN
Sbjct: 449 VEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF-FGISPDIWTYN 507
Query: 231 TLISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM- 286
L+ G L +E A F++++ + ++ TY +I G GKVEE + +
Sbjct: 508 ILL---GGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKT---GKVEEAWSLF 561
Query: 287 --MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
+ + PD TY ++ G G L +E +Y +K
Sbjct: 562 CSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQE 602
>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
Length = 808
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 118/274 (43%), Gaps = 9/274 (3%)
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS 211
+P T Y I R++ DL + L +L+ ++ +G DK
Sbjct: 96 SPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIYGFVKDGEVDKAHC 155
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
LF ++ E + P I+ N++I ++ +D E+ Q++ DS ++P++FTY+ +I G
Sbjct: 156 LFLEMM-EQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGL 214
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
+ K E + + M P++ TY L+ GY+ SG +++ K
Sbjct: 215 CKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVF---KQMSSCGVI 271
Query: 332 PLI---RAMICAYSKCSVTDRIKKI-EALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME 387
P + + I A K T+ K I ++++ P+ + + +L A + CL ++
Sbjct: 272 PTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVH 331
Query: 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
N K + ++++Y RC +DK
Sbjct: 332 NIFNLMLT-KGIAPNKHVFNILINAYARCGMMDK 364
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 58/332 (17%), Positives = 129/332 (38%), Gaps = 14/332 (4%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL---LLVD 243
+ T+ N+ + A +G +++ + +F + + P I++Y+T++ + L D
Sbjct: 271 IPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGP-KPDIISYSTMLHGYATATDSCLAD 329
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
+ F + ++PN +N LI Y M K I++ M+ ++PDT T+ ++
Sbjct: 330 -VHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 388
Query: 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
G R++ H VD P C C + K + L+ + K
Sbjct: 389 SSLCRIG---RLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNK 445
Query: 364 EYRP----WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
+ P + + +I KE + E K I D V ++ Y +
Sbjct: 446 DIPPPGVKYFSS-IINNLCKEGRVAE-GKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNM 503
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
++ + S G +Y + + Y R+++ +V ++M + + + + I+
Sbjct: 504 EEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSII 563
Query: 480 YYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
+ + ++ M ++G V ++ +
Sbjct: 564 LHGLFQARRTTAAKKMFHEMIESGTTVSIHTY 595
>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
Length = 548
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 2/147 (1%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +LF E + I TY++L+ + D+ +F DL +V+YNTLI
Sbjct: 279 AKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMF-DLMVSKGCLADVVSYNTLI 337
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F + V+ F+E+ L N TYN LI G+ A K +E + M +
Sbjct: 338 NGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGIS 397
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYE 320
PD TY +LL G +G L + I+E
Sbjct: 398 PDIWTYNILLGGLCDNGELEKALVIFE 424
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 112/287 (39%), Gaps = 15/287 (5%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E P IV YN +I + V+ F+EI+ + PNV TY L+ G + W
Sbjct: 183 EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWS 242
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAM 337
+ M + P+ TY LL + +G + ++++ E+V+ +D P I
Sbjct: 243 DAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSID----PDIVTY 298
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDA 393
+ + DRI + + L+ K +V+ LI + K +E+ K +
Sbjct: 299 SSLVNGLCLHDRIDEANQMFDLMVSKGCLA--DVVSYNTLINGFCKAKRVEDGMKLFRE- 355
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
+ V+ ++ +F+ VDK F + + G Y+ +
Sbjct: 356 MSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGE 415
Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
+E+ + ++M+ ++D T+ + G KV + L C
Sbjct: 416 LEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTG---KVEEAWSLFC 459
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+VD A + F++ + I TYN LLG NG +K +F D++K + IVT
Sbjct: 379 GDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKR-EMDLDIVT 437
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y T+I + V+ + F + L P++ TY +++G T + +VE +Y MK
Sbjct: 438 YTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMK 497
Query: 289 AGPVMPDTNT 298
+M + T
Sbjct: 498 QEGLMKNDCT 507
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 14/155 (9%)
Query: 178 LFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
LF E + + L TYN L+ + G DK Q F + ISP I TYN L+
Sbjct: 352 LFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMD-FFGISPDIWTYNILL--- 407
Query: 237 GRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM---MKAG 290
G L +E A F++++ + ++ TY +I G GKVEE + + +
Sbjct: 408 GGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKT---GKVEEAWSLFCSLSLK 464
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
+ PD TY ++ G G L +E +Y +K
Sbjct: 465 GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQE 499
>gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana]
gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 453
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 22/212 (10%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G CL +R ++ M + G P L T KG AG+I
Sbjct: 204 GWCLIKRTPKALEVLKEMVERGINPNLT-----------------TYNTMLKGFFRAGQI 246
Query: 170 NNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ A + F E + + + TY ++ + G + +++F ++ +E + PS+ T
Sbjct: 247 RH---AWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREG-VLPSVAT 302
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN +I V + V++ F+E+ PNV TYN LI G A + + EE+ Q M+
Sbjct: 303 YNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRME 362
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
P+ TY +++R Y+ + + ++E
Sbjct: 363 NEGCEPNFQTYNMMIRYYSECSEVEKALGLFE 394
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 91/208 (43%), Gaps = 8/208 (3%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ TYN +L + G F ++KK + +VTY T++ FG + F
Sbjct: 230 LTTYNTMLKGFFRAGQIRHAWEFFLEMKKR-DCEIDVVTYTTVVHGFGVAGEIKRARNVF 288
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
E+ + P+V TYN +I +++ M P+ TY +L+RG H+
Sbjct: 289 DEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHA 348
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G R E++ + +++ F MI YS+CS ++K L + + P L
Sbjct: 349 GEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECS---EVEKALGLFEKMGSGDCLPNL 405
Query: 370 ---NVLLIRVYAKEDCLEEMEKSINDAF 394
N+L+ ++ ++ E+M + N AF
Sbjct: 406 DTYNILISGMFVRKRS-EDMVVAGNQAF 432
>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 913
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 145/345 (42%), Gaps = 14/345 (4%)
Query: 170 NNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
N+D A +L E + I Y++++ Y KC +F LK E +PSI++
Sbjct: 396 GNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLK-ECCFTPSIIS 454
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y LI+++ ++ V A +E++ S + N TY+ LI+G++ + I++ M
Sbjct: 455 YGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEML 514
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+ PD Y LL+ + GN+ R +I E ++ R +I ++
Sbjct: 515 KSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMK 574
Query: 349 RIKKIEALMRLIPEKEYRPWLNVL---LIRVYAKEDCLEEMEK-SINDAFEHKTSVTTVR 404
R I LMR N L LIR E + + K SI ++ + T
Sbjct: 575 RALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTI-- 632
Query: 405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
IMR Y + K + + + G +L +Y + + R++ +V +EM
Sbjct: 633 IMR----GYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREM 688
Query: 465 ENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVN 509
+ KI + + I+ +A G + ++ M ++G VP N
Sbjct: 689 SSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDG--VPPN 731
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YN L+ + G + L + +K E + P+I TY + I+ + + + E
Sbjct: 699 VYNILIDGWARRGDVWEAADLMKQMK-EDGVPPNIHTYTSYINACCKAGDMQRAQTVIDE 757
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
+ D L PN+ TY LI G+ A + + + ++ MK + PD Y L+
Sbjct: 758 MSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLV 809
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 4/173 (2%)
Query: 154 MTKEEYTKGIKFAGRINNVDLAA--DLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQ 210
+T E+T I G D+A + F + LK + Y LL A +G
Sbjct: 623 ITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSAL 682
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
++ R++ + I+ + YN LI + R V +++K+ + PN+ TY I
Sbjct: 683 AVTREMSSQ-KIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINA 741
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
A + + + M + P+ TY L++G+A + R K +E +K
Sbjct: 742 CCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMK 794
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
R +V AADL + + I TY + + A G + Q++ ++ + + P+
Sbjct: 708 ARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMS-DVGLKPN 766
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+ TY TLI + R L D F+E+K + L P+ Y+ L+ ++
Sbjct: 767 LKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLVTSLLS 814
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 53/319 (16%), Positives = 118/319 (36%), Gaps = 45/319 (14%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
PS + +I + + H A F+ ++ + PN F + L+ Y A
Sbjct: 275 PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSC 334
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+ MKA + TY +L+ G+ + + +++ K ++ + +I A+ +
Sbjct: 335 TEEMKAEGIELTIVTYSILISGFGKINDTQSADNLFKEAKTNLGDLNGIIYSNIIHAHCQ 394
Query: 344 CSVTDRIKKIEALMRL----IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS 399
DR +++ M P Y ++ I + ++ CL E+ F
Sbjct: 395 SGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTI-IQDEKKCLIVFERLKECCF----- 448
Query: 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG------------------------WR 435
++ C+++ Y + V K K ES+G +R
Sbjct: 449 TPSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFR 508
Query: 436 LC-----------RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
+ R++Y+ + + ++ +L++M+ ++ S + F + +A
Sbjct: 509 IFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFA 568
Query: 485 TCGQRRKVNQVLGLMCKNG 503
G ++ +L LM ++G
Sbjct: 569 VAGDMKRALDILDLMRRSG 587
>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 9/199 (4%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
RI V+LA ++ E + + + T N ++ A +G +K + ++ E + P I
Sbjct: 212 RIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQ-EKGVYPDI 270
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTYNTLIS + L++ + SP V+TYN +I G + + +E++
Sbjct: 271 VTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAE 330
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346
M + PD+ TY LL G++ EK++ D + ++ ++C S S+
Sbjct: 331 MLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFS------DMRSRDVVPDLVCFSSMMSL 384
Query: 347 TDRIKKIE-ALMRLIPEKE 364
R ++ ALM KE
Sbjct: 385 FTRSGNLDKALMYFNSVKE 403
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 10/146 (6%)
Query: 181 EAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
E +K++K T+ N+++ Y +G + +S + E + P ++YNTLI F R
Sbjct: 575 EMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFV-PDCISYNTLIYGFVR- 632
Query: 240 LLVDHMEAAFQEIK-----DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294
++M AF +K L P+VFTYN ++ G+ + E + + M V P
Sbjct: 633 --EENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNP 690
Query: 295 DTNTYLLLLRGYAHSGNLPRMEKIYE 320
D +TY ++ G+ NL +I++
Sbjct: 691 DRSTYTCMINGFVSQDNLTEAFRIHD 716
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/333 (20%), Positives = 134/333 (40%), Gaps = 18/333 (5%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+++++ + +G DK F +K EA + P V Y LI + R ++ E+
Sbjct: 378 FSSMMSLFTRSGNLDKALMYFNSVK-EAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEM 436
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ +V TYN ++ G M G+ ++++ M + PD+ T +L+ G+ GNL
Sbjct: 437 LQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNL 496
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM---RLIPEKEYRPWL 369
++++ +K + ++ + K D K+I A M ++P P
Sbjct: 497 QNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPT----PIS 552
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
+L+ + L E + + D K TV I ++ Y R +F+++
Sbjct: 553 YSILVNALCSKGHLAEAFR-VWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKM 611
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC--G 487
S G+ Y++ + + + + + ++K+ME + F + C
Sbjct: 612 ISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQN 671
Query: 488 QRRKVNQVLGLMCKNG-------YDVPVNAFPS 513
Q ++ VL M + G Y +N F S
Sbjct: 672 QMKEAEVVLRKMIERGVNPDRSTYTCMINGFVS 704
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 94/226 (41%), Gaps = 18/226 (7%)
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
L + + SI N LI R+ V+ +QEI S + NV+T N ++
Sbjct: 190 LLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDG 249
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF-PLI 334
KV ++ V PD TY L+ Y+ G ME+ +EL+ + + GK F P +
Sbjct: 250 KMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKG---LMEEAFELM-NAMPGKGFSPGV 305
Query: 335 ---RAMICAYSKCSVTDRIKKIEALM---RLIPEK-EYRPWLNVLLIRVYAKEDCLEEME 387
+I K +R K++ A M L P+ YR LL+ K D +E E
Sbjct: 306 YTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRS----LLMEACKKGDVVET-E 360
Query: 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
K +D + V + ++S + R +DK + + AG
Sbjct: 361 KVFSD-MRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAG 405
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 2/141 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
++ V+ A DLF+E +K + + TY+AL+ + G LF + E NI P +
Sbjct: 237 KVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILE-NIKPDV 295
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
T+N L++ F + + + F + + PN TYN L+ GY K + I+
Sbjct: 296 YTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNT 355
Query: 287 MKAGPVMPDTNTYLLLLRGYA 307
M G V PD +Y +++ G+
Sbjct: 356 MAQGGVNPDIQSYSIMINGFC 376
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 111/226 (49%), Gaps = 17/226 (7%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A DLF + +++K + T+N L+ A+ +G + +++F D+ + I P+ VTYN+L+
Sbjct: 279 AIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVF-DMMMKQGIKPNFVTYNSLM 337
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ + V+ ++ F + ++P++ +Y+ +I G+ + + +++ M ++
Sbjct: 338 DGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNII 397
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-----CSVTD 348
PD TY L+ G + SG R+ +LV D P IC Y+ C T
Sbjct: 398 PDVVTYSSLIDGLSKSG---RISYALQLVDQMHDRGVPP----NICTYNSILDALCK-TH 449
Query: 349 RIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSIND 392
++ K AL+ +K ++P ++ +LI+ + LE+ K D
Sbjct: 450 QVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFED 495
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 71/153 (46%), Gaps = 2/153 (1%)
Query: 169 INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+ V+ A +F A + I +Y+ ++ + D+ +LF+++ ++ NI P +V
Sbjct: 343 VKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRK-NIIPDVV 401
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TY++LI + + + ++ D + PN+ TYN ++ K +
Sbjct: 402 TYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKF 461
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
K PD +TY +L++G SG L K++E
Sbjct: 462 KDKGFQPDISTYSILIKGLCQSGKLEDARKVFE 494
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 70/388 (18%), Positives = 154/388 (39%), Gaps = 16/388 (4%)
Query: 129 QLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK 188
QLG P A V + +T +KG+ G+I L D A H
Sbjct: 132 QLGLIP-FAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVV-ALGFHFD 189
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN-ISPSIVTYNTLISVFGRLLLVDHMEA 247
I +Y L+ G + L + + + N + P++V YNT+I ++ LV+
Sbjct: 190 QI-SYGTLIHGLCKVGETRAALDLLQ--RVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFD 246
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
F E+ +SP+V TY+ LI+G+ +++ M + PD T+ +L+ +
Sbjct: 247 LFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFC 306
Query: 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
G + + +++++ F +++ Y C V + + K +++ + + P
Sbjct: 307 KDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGY--CLVKE-VNKAKSIFNTMAQGGVNP 363
Query: 368 WLN--VLLIRVYAKEDCLEEMEKSIN--DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLA 423
+ ++I + K +++ ++++N K + V ++ + +
Sbjct: 364 DIQSYSIMINGFCK---IKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYAL 420
Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
V + G Y+S + +V++ ++L + ++ T+ I+
Sbjct: 421 QLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGL 480
Query: 484 ATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
G+ +V + GY++ V A+
Sbjct: 481 CQSGKLEDARKVFEDLLVKGYNLDVYAY 508
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 79/202 (39%), Gaps = 22/202 (10%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G CL + + + M Q G P + + Y+ I +I
Sbjct: 339 GYCLVKEVNKAKSIFNTMAQGGVNPDI--------------------QSYSIMINGFCKI 378
Query: 170 NNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
D A +LF E K++ + TY++L+ +G L D + + P+I T
Sbjct: 379 KKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLV-DQMHDRGVPPNICT 437
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN+++ + VD A + KD P++ TY+ LI G + ++++ +
Sbjct: 438 YNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLL 497
Query: 289 AGPVMPDTNTYLLLLRGYAHSG 310
D Y ++++G+ G
Sbjct: 498 VKGYNLDVYAYTIMIQGFCVEG 519
>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
Length = 1059
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 7/191 (3%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +L+ E + + I TYN+L+ + G + +F DL P +VTYNTLI
Sbjct: 809 AKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMF-DLMVSKGCFPDVVTYNTLI 867
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F + V+ F E+ L + FTYN LI GY A ++++ M V
Sbjct: 868 TGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVP 927
Query: 294 PDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352
PD TY +LL ++G + + + + +L K+ +D +I I C D++K+
Sbjct: 928 PDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMD---VDIITYNIIIQGMCR-NDKVKE 983
Query: 353 IEALMRLIPEK 363
L R + K
Sbjct: 984 AWCLFRSLTRK 994
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 21/209 (10%)
Query: 124 VELMKQLGSRPRLALEVLNWR------------RRQAGYGTPMTKEE-------YTKGIK 164
+EL+ ++ + RLA +++ + R+ A MTK +T I
Sbjct: 190 LELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALID 249
Query: 165 FAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANIS 223
+ N+D A +L+ + + TYN+L+ +G + F DL
Sbjct: 250 AFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTF-DLMASKGCF 308
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P++VTYNTLI+ F + V+ FQ + L + FTYN LI GY ++I
Sbjct: 309 PNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDI 368
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ M + V PD T+ +LL G +G +
Sbjct: 369 FSWMVSCGVTPDIITHCILLHGLCVNGEI 397
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 89/213 (41%), Gaps = 23/213 (10%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G CL R + ++ V M + G P + + Y I +
Sbjct: 144 GFCLRNRIHDAFSLVASMVKSGYEPNVVV--------------------YNTLIDCLCKN 183
Query: 170 NNVDLAADLFAEAANKH--LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+V++A +L E K + TYN LL Y+G + + RD+ K I+P +
Sbjct: 184 GDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKR-RINPDVF 242
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
T+ LI F + +D + ++++ S++ PN TYN LI G ++ + +M
Sbjct: 243 TFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLM 302
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ P+ TY L+ G+ S + K+++
Sbjct: 303 ASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQ 335
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 92/195 (47%), Gaps = 10/195 (5%)
Query: 132 SRPRLALEVLNWRRRQAGYG-TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-T 189
SR LAL +L + + GY + +T G RI++ A L A +
Sbjct: 114 SRLSLALSILG-KMMKLGYDPSIVTFGSLLHGFCLRNRIHD---AFSLVASMVKSGYEPN 169
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA- 248
+ YN L+ NG + L +++K+ ++ +VTYNTL++ G + +AA
Sbjct: 170 VVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLT--GLCYSGEWRQAAR 227
Query: 249 -FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
+++ ++P+VFT+ LI ++ + +E+Y+ M + P+T TY L+ G
Sbjct: 228 ILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLC 287
Query: 308 HSGNLPRMEKIYELV 322
G L +K ++L+
Sbjct: 288 MHGRLYHAKKTFDLM 302
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+I T +LL + + SL D E + P++V YNT+I+ + +++
Sbjct: 684 SIVTLGSLLNGFCQGNRFQEAVSLV-DSMAELGLEPNVVIYNTVINGLCKNRDLNNALEI 742
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F ++ + + TYN LI+G + W + + M + P+ + L+ +
Sbjct: 743 FYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVK 802
Query: 309 SGNLPRMEKIY-ELVKHHV 326
GNL + +Y E+++ V
Sbjct: 803 EGNLLEAKNLYKEMIRRSV 821
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 58/269 (21%), Positives = 103/269 (38%), Gaps = 52/269 (19%)
Query: 75 ARVRKDLTQ--------TVSALRDELL--ANVDDLDKVFRVLDE--------------KG 110
AR+ +D+T+ T +AL D + N+D+ ++++ + + G
Sbjct: 226 ARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLING 285
Query: 111 SCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN 170
C+ R + +LM G P V+ + G+ E+ G+K R+
Sbjct: 286 LCMHGRLYHAKKTFDLMASKGCFP----NVVTYNTLINGFCKSRRVED---GMKLFQRMY 338
Query: 171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
L D F TYN L+ Y G + +F + ++P I+T+
Sbjct: 339 REGLVGDTF------------TYNTLIHGYCQVGKLRVAKDIFSWMV-SCGVTPDIITHC 385
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
L+ + F +++ + YN +I G A KVEE +++
Sbjct: 386 ILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKA---DKVEEAWELFCRL 442
Query: 291 PV---MPDTNTYLLLLRGYAHSGNLPRME 316
PV PD TY +++ G +G PR E
Sbjct: 443 PVEGVKPDARTYTIMILGLCKNG--PRRE 469
Score = 38.5 bits (88), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 70/175 (40%), Gaps = 5/175 (2%)
Query: 147 QAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGL 205
Q G T G AG++N +A +F + + I TYN LL NG
Sbjct: 889 QGLVGDAFTYNTLIHGYCQAGKLN---VAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGK 945
Query: 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
+K + DL+K + I+TYN +I R V F+ + + + Y
Sbjct: 946 IEKALVMVEDLQKN-QMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYI 1004
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+I+G + + +++ MK MP Y LR + S + ++ ++E
Sbjct: 1005 TMISGLCRNGLRREADKLCTRMKEDGFMPSERIYDETLRDHYTSLSAELIKAVHE 1059
>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 80/172 (46%), Gaps = 2/172 (1%)
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDK 208
YG Y I G+ +V+ A +LF + ++ + +Y +L+G G D
Sbjct: 924 YGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDD 983
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
F LK+ SI YN +I GR ++ + E++ ++P++FTYN LI
Sbjct: 984 ALHYFEKLKQTGLYLDSI-AYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLI 1042
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
A M + ++Y+ ++ + P+ TY L+RGY+ SGN +Y+
Sbjct: 1043 LNLGVAGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYK 1094
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/317 (20%), Positives = 131/317 (41%), Gaps = 9/317 (2%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ T++AL+ A ++ +SL +++ + P+I TY I V GR +D
Sbjct: 228 SLKTFSALMVATGKRRDTETVKSLLEEME-SLGLKPNIYTYTICIRVLGRAGRIDEACRI 286
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ ++D P+V TY LI TA E++ MKA PD TY+ +L ++
Sbjct: 287 MKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSD 346
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR---LIPEKEY 365
G+L R+++ + ++ + ++ A K D + +MR ++P
Sbjct: 347 CGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHT 406
Query: 366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
L L+RV +D L+ + + E V T + Y + DK
Sbjct: 407 YNTLISGLLRVNRLDDALD-----LFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALET 461
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
++ + G ++ + A R+ E + + +++ + T+ +M Y+
Sbjct: 462 FEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSK 521
Query: 486 CGQRRKVNQVLGLMCKN 502
GQ + ++L M +N
Sbjct: 522 AGQVDEAIELLSDMSEN 538
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNY 266
QS+F KE + P++ +YN LI F L V + E A F E+K++ +P+VFTYN
Sbjct: 774 QSVFIRFTKELGVKPTLESYNFLIEGF---LGVHNDEMAWNLFTEMKNAGCAPDVFTYNL 830
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELV 322
L+ + + ++ E+Y+ M P+T T+ +++ S +L + ++ Y+LV
Sbjct: 831 LLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLV 887
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ Y G D+ L D+ E P I+ N+LI+ + VD F
Sbjct: 511 TYNMMMKCYSKAGQVDEAIELLSDMS-ENQCEPDIIVINSLINTLYKAGRVDEAWKMFCR 569
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
+KD L+P V TYN LIAG + E++ M P+T T+ +L
Sbjct: 570 LKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTIL 621
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 4/139 (2%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ +YN L+ ++ + +LF ++K A +P + TYN L+ G+ ++ +
Sbjct: 789 TLESYNFLIEGFLGVHNDEMAWNLFTEMKN-AGCAPDVFTYNLLLDAHGKSGKINELFEL 847
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
++++ S+ PN T+N +IA + + K +++ + +G P TY LL G
Sbjct: 848 YEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLK 907
Query: 309 SGNLPRMEKIYELVKHHVD 327
SG R+E+ EL + VD
Sbjct: 908 SG---RLEEAKELFEEMVD 923
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 85/194 (43%), Gaps = 26/194 (13%)
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
F+ K+LG +P L E Y I+ ++N ++A +LF E
Sbjct: 776 VFIRFTKELGVKPTL--------------------ESYNFLIEGFLGVHNDEMAWNLFTE 815
Query: 182 AANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKE--ANISPSIVTYNTLISVFGR 238
N + TYN LL A+ G S K LF ++ ++ P+ +T+N +I+ +
Sbjct: 816 MKNAGCAPDVFTYNLLLDAH---GKSGKINELFELYEQMICSSCKPNTITHNIIIANLVK 872
Query: 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298
+D F ++ + SP TY L+ G + + + +E+++ M P+
Sbjct: 873 SNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAI 932
Query: 299 YLLLLRGYAHSGNL 312
Y +L+ G+ +G++
Sbjct: 933 YNILINGFGKTGDV 946
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 15/233 (6%)
Query: 93 LANVDDLDKVFRVLD--EKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGY 150
L ++D+ F +LD K L H+ L++ +R AL++ N
Sbjct: 379 LCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRV--NRLDDALDLFN---NMETL 433
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G T Y I F G+ D A + F + + + I NA L + G +
Sbjct: 434 GVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREA 493
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+ +F LK ++P VTYN ++ + + VD ++ ++ P++ N LI
Sbjct: 494 KVIFNRLKSNG-LAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLIN 552
Query: 270 GYMTAWMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
T + G+V+E ++M +K + P TY L+ G G + R +++
Sbjct: 553 ---TLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELF 602
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 6/162 (3%)
Query: 166 AGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
AGR VD A +F + L T+ TYN L+ G + LF + P
Sbjct: 557 AGR---VDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNG-CPP 612
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
+ +T+NT++ + VD ++ N P+V T+N +I G + ++
Sbjct: 613 NTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLF 672
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
MK + PD T LL G +G + KI E H +
Sbjct: 673 HQMKK-MLTPDCVTLCTLLPGVVKNGLMEDAFKIAEDFVHRL 713
>gi|147767583|emb|CAN60200.1| hypothetical protein VITISV_039678 [Vitis vinifera]
Length = 525
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 89/210 (42%), Gaps = 4/210 (1%)
Query: 104 RVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGI 163
+VLDE Y+ V + +P L L+ L + + + T T K +
Sbjct: 288 KVLDEMRQXGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVATYTSVVKCL 347
Query: 164 KFAGRINNVD-LAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI 222
GR+ + + L +D+ + + + TYN Y SD L+R +K+E +
Sbjct: 348 CSCGRLEDAEELVSDMVKDGVSP---SAATYNCFFKEYRGRKDSDNALRLYRKMKEEYSC 404
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
P + TYN L+ +F +L ++ ++ + ++K S P++ +Y LI G W +
Sbjct: 405 LPDMHTYNILVGMFVKLNRMEIVQEIWDDMKTSGAGPDLDSYTLLIHGLCEKQKWKEACH 464
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ M +P T+ L RG S L
Sbjct: 465 FFVEMIEKGYLPQKITFETLYRGLIQSDML 494
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 87/223 (39%), Gaps = 27/223 (12%)
Query: 101 KVFRVLDEKGSCLFRRHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEE 158
+ R D+ SC + ++ F L+ L +LA ++ N R+ + M
Sbjct: 170 QAVRAFDDM-SCFVEKDADSDDFCYLLDTLSKYGYVKLASQIFNQRKFKFEANAKM---- 224
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGL--------SDKC 209
YT I +IN V +A L E + J + TYN LL NG+ D+
Sbjct: 225 YTILIYGWCKINRVSIAERLLGEMVERGJXANVVTYNVLL-----NGICRXASLHPDDRF 279
Query: 210 QSLFRDLKK------EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
+ RD +K + I P + +Y+ +I V+ R + + +KD + P V T
Sbjct: 280 ERTIRDAEKVLDEMRQXGIEPDVTSYSIVIHVYSRAHKPELTLDKLRMMKDKGIWPTVAT 339
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
Y ++ + EE+ M V P TY + Y
Sbjct: 340 YTSVVKCLCSCGRLEDAEELVSDMVKDGVSPSAATYNCFFKEY 382
>gi|449469290|ref|XP_004152354.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
gi|449484425|ref|XP_004156880.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Cucumis sativus]
Length = 834
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y L+ ++ +G D+ + LF+ L E + P +V YN +I F + ++D+ +
Sbjct: 490 VYATLVDGFIRHGNLDEAKKLFQ-LIIEKGLDPGVVGYNVMIKGFSKSGMMDNAILCIDK 548
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ ++ P++FT++ +I GY+ V +I+ +M P+ TY L+ GY G
Sbjct: 549 MRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGE 608
Query: 312 LPRMEKIYELVKHH 325
EK++ +++ H
Sbjct: 609 TKMAEKLFSMMRSH 622
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 81/198 (40%), Gaps = 5/198 (2%)
Query: 162 GIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G+ AG VD A + N+ L YN L+ G + + ++ +
Sbjct: 427 GLVVAGE---VDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLSMAKVMLTEMLDQ- 482
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
NI+P Y TL+ F R +D + FQ I + L P V YN +I G+ + M
Sbjct: 483 NIAPDAFVYATLVDGFIRHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNA 542
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340
M+ +PD T+ ++ GY N+ + KI+ L+ ++I
Sbjct: 543 ILCIDKMRRAHHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLING 602
Query: 341 YSKCSVTDRIKKIEALMR 358
Y + T +K+ ++MR
Sbjct: 603 YCRKGETKMAEKLFSMMR 620
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 2/156 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R N+D A LF K L + YN ++ + +G+ D L D + A+ P I
Sbjct: 500 RHGNLDEAKKLFQLIIEKGLDPGVVGYNVMIKGFSKSGMMDNA-ILCIDKMRRAHHVPDI 558
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
T++T+I + + ++ + F + N PNV TY LI GY E+++ M
Sbjct: 559 FTFSTIIDGYVKQHNMNAVLKIFGLMVKQNCKPNVVTYTSLINGYCRKGETKMAEKLFSM 618
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
M++ + P TY +L+ + L + +EL+
Sbjct: 619 MRSHGLKPSVVTYSILIGSFCKEAKLGKAVSYFELM 654
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 5/162 (3%)
Query: 160 TKGIKFAGRI-NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218
KG+ GRI + + L + + + I YN L+ Y G + LF+ LK
Sbjct: 215 VKGLCLKGRIEDGIKLIESRWGKGC---VPNIVFYNTLIDGYCKKGEVESAYKLFKKLKM 271
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
+ I P++ T+ +L++ F ++ + + ++ E+KD LS NV YN +I
Sbjct: 272 KGFI-PTLQTFGSLVNGFCKMGMFEAIDLLLLEMKDRGLSVNVQMYNNIIDARYKLGFDI 330
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
K ++ + M PD TY L+ + G + EK+ E
Sbjct: 331 KAKDTLKEMSENCCEPDLVTYNTLINHFCSRGEVEEAEKLLE 372
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 3/149 (2%)
Query: 161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
KG +G ++N L D A H+ I T++ ++ Y+ + +F + K+
Sbjct: 531 KGFSKSGMMDNAILCIDKMRRA--HHVPDIFTFSTIIDGYVKQHNMNAVLKIFGLMVKQ- 587
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
N P++VTY +LI+ + R E F ++ L P+V TY+ LI + GK
Sbjct: 588 NCKPNVVTYTSLINGYCRKGETKMAEKLFSMMRSHGLKPSVVTYSILIGSFCKEAKLGKA 647
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+++M P+ + L+ G+ ++
Sbjct: 648 VSYFELMLINKCTPNDAAFHYLVNGFTNT 676
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 87/390 (22%), Positives = 147/390 (37%), Gaps = 82/390 (21%)
Query: 83 QTVSALRDELLA--NVDDL--DKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRL-- 136
+T L DE++ N DD+ D + KG CL R +G +E G P +
Sbjct: 186 ETAHQLYDEMIDRDNGDDICVDNYTTSIMVKGLCLKGRIEDGIKLIESRWGKGCVPNIVF 245
Query: 137 ----------------ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFA 180
A ++ + + T T G G +DL L
Sbjct: 246 YNTLIDGYCKKGEVESAYKLFKKLKMKGFIPTLQTFGSLVNGFCKMGMFEAIDL---LLL 302
Query: 181 EAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
E ++ L + YN ++ A G K + +++ E P +VTYNTLI+ F
Sbjct: 303 EMKDRGLSVNVQMYNNIIDARYKLGFDIKAKDTLKEMS-ENCCEPDLVTYNTLINHFCSR 361
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE----------------- 282
V+ E ++ L+PN TY L+ GY + K +
Sbjct: 362 GEVEEAEKLLEQTIRRGLAPNKLTYTPLVHGYCKQGEYTKATDYLIEMSTSGLEVDMISY 421
Query: 283 ---IYQMMKAGPV---------------MPDTNTYLLLLRGYAHSGNLPRMEKIY--ELV 322
I+ ++ AG V +PD N Y +L+ G G L M K+ E++
Sbjct: 422 GALIHGLVVAGEVDTALTIRDRMMNRGILPDANIYNVLMNGLFKKGKLS-MAKVMLTEML 480
Query: 323 KHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL---NVLLIRVYAK 379
++ F + ++ + + D KK L +LI EK P + NV +I+ ++K
Sbjct: 481 DQNIAPDAF-VYATLVDGFIRHGNLDEAKK---LFQLIIEKGLDPGVVGYNV-MIKGFSK 535
Query: 380 ED-------CLEEMEKS--INDAFEHKTSV 400
C+++M ++ + D F T +
Sbjct: 536 SGMMDNAILCIDKMRRAHHVPDIFTFSTII 565
>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 917
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 118/260 (45%), Gaps = 30/260 (11%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
++ + A D+ E A+ +K + TYNALLG Y G D+ + +F ++K+E ++ P++
Sbjct: 456 KVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKRE-HVLPNL 514
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK-VEEIYQ 285
+TY+TLI + + L F+E K + L +V Y+ LI + G V I +
Sbjct: 515 LTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDE 574
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
M K G + P+ TY ++ + S + R + +G P + A S+ +
Sbjct: 575 MTKEG-ISPNVVTYNSIIDAFGRSATMERSAD-------YSNGGSLPFSSS---ALSELT 623
Query: 346 VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEK--SINDAFE--HKTSVT 401
T+ + I+ +L E R +DC E M++ I + F H+ +
Sbjct: 624 ETEGNRVIQLFGQLTSEGNNR-----------MTKDCKEGMQELSCILEVFRKMHQLEIK 672
Query: 402 -TVRIMRCIVSSYFRCNAVD 420
V I+++ RCN+ +
Sbjct: 673 PNVVTFSAILNACSRCNSFE 692
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 17/233 (7%)
Query: 93 LANVDDLDKVFRVLDEKGSC-------------LFRRHSNGYAFVELMKQLGSRPRLALE 139
L DD + R L +G C R++ G ++ LG ++ +
Sbjct: 193 LCGSDDCTYIIRELGNRGECDKAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGKVTIA 252
Query: 140 VLNWRRR-QAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALL 197
+ GYG T ++ I GR + A +F L+ + TYNA++
Sbjct: 253 KRIFETAFSGGYGN--TVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVI 310
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
A G+ K + F D + + P +T+N+L++V R L + F E+ + +
Sbjct: 311 DACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRI 370
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+VF+YN L+ EI M A +MP+ +Y ++ G+A +G
Sbjct: 371 EQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAG 423
>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYNALL G Q+L+ + K A SP +VTYNTL+ F ++ +D F
Sbjct: 12 TYNALLSGLCNGGRMSDAQALYERMIK-AGYSPDVVTYNTLLHGFCKVGELDEALKIFDG 70
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
P+V TYN LI G+ A + + I Q M + ++PD TY L+ G +G
Sbjct: 71 AVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNG 129
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 4/169 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY + G + + +D+ ++ + P +V++N +I+ + VD E
Sbjct: 220 TYTVFIDGLCKAGRVEDALLMLKDMDEKGCV-PDVVSHNAVINGLCKEKRVDEAEVLLSG 278
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ SPN ++N LI G A W K ++ M V P TY +L+ G +
Sbjct: 279 MEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQ 338
Query: 312 LPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALM 357
R+++ L ++ P + A+I K D +++ M
Sbjct: 339 EGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAM 387
Score = 46.6 bits (109), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 179 FAEAANKHLK-TIGTYNALLGAYM---YNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234
F E + +K T+ TYN L+ G + +LF + ++ + P +VTY+ LI
Sbjct: 311 FKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRV-PDVVTYSALID 369
Query: 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294
G+ +D ++ PNV+TYN LI+G + E++ M +P
Sbjct: 370 GLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVP 429
Query: 295 DTNTY 299
DT TY
Sbjct: 430 DTITY 434
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Query: 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
PN TYN L++G + +Y+ M PD TY LL G+ G L KI
Sbjct: 8 PNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKI 67
Query: 319 YELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE 362
++ + A+I + K D ++I L R++ E
Sbjct: 68 FDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRI--LQRMVSE 109
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 7/144 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA--- 248
++N L+ G K + F+++ K + P++VTYN L+ + ++ A
Sbjct: 290 SFNTLICGQCRAGKWKKAMTTFKEMLKRG-VKPTVVTYNILVDGLCKARQEGRIKEAITL 348
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F + + P+V TY+ LI G A + M+A +P+ TY L+ G
Sbjct: 349 FDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLC- 407
Query: 309 SGNLPRMEKIYELVKHHVDGKEFP 332
L ++++ EL V+ P
Sbjct: 408 --GLEKVDEALELFVAMVEKGCVP 429
>gi|298712182|emb|CBJ33054.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 903
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 10/181 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN L A + SL RD+ K + P +++YNT+IS G+ D A +E
Sbjct: 459 SYNTALSACEVGEQWGRALSLLRDMPKR-GVKPVVISYNTVISACGKCGEGDQALALLRE 517
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP---VMPDTNTYLLLLRGYAH 308
+ + L P+V T+N IA + G+ ++ ++M+ P V D TY L G AH
Sbjct: 518 MPERGLMPDVITFNSAIAALSNS---GRPDDAVRLMREMPRAGVAADAITYSSALTGLAH 574
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+G R E+ L++ P + A C + + L+R +P P
Sbjct: 575 AG---RWEQALSLLREMQGAGVSPTVICYTAAIRACGEAGKGDEALLLLREMPTAGVTPN 631
Query: 369 L 369
L
Sbjct: 632 L 632
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 94/239 (39%), Gaps = 42/239 (17%)
Query: 167 GRINNVDLAADLF--AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
G+ V A L A A+ L + +YN + A + G + S+ R+++ E I P
Sbjct: 170 GKAGRVQEALGLMRDARASGIELDVV-SYNCAIPACVTGGDWELALSMIREMEAEYGIKP 228
Query: 225 SIVTYNTLISVFGR---------LLL-----------------------VDHMEAA---F 249
+ +TY I V GR LL+ VDH +AA
Sbjct: 229 NHITYQAAIKVCGRCGKADEAASLLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTL 288
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK-AGPVMPDTNTYLLLLRGYAH 308
+EI D + PNVF YN I W + ++ M+ G V PD TY +++ A
Sbjct: 289 REIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEPDVVTYNIVV---AA 345
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
G + EK E+ + + P + + A S C ++ ++ R + RP
Sbjct: 346 CGKAGQGEKAIEIFREMSEVGIKPDVISFTTAISACGSCGLSEEALSIFREMERAGVRP 404
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ A G +K +FR++ E I P ++++ T IS G L + + F+E
Sbjct: 338 TYNIVVAACGKAGQGEKAIEIFREMS-EVGIKPDVISFTTAISACGSCGLSEEALSIFRE 396
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ + + PN+ T+N +++ + A W
Sbjct: 397 MERAGVRPNIITHNAVMSACIAAGQW 422
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 5/182 (2%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TI 190
RP A+ ++ R +T G+ AGR A L E + T+
Sbjct: 541 GRPDDAVRLMREMPRAGVAADAITYSSALTGLAHAGRWEQ---ALSLLREMQGAGVSPTV 597
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
Y A + A G D+ L R++ A ++P++ +Y+ IS G+ + A
Sbjct: 598 ICYTAAIRACGEAGKGDEALLLLREMPT-AGVTPNLFSYSATISACGKDGRWEQGLALLN 656
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+ L+PN F Y I G W + ++ M A + P Y + AH G
Sbjct: 657 EMPALGLTPNEFCYTAAITGCGIGGQWERAVATFRSMIASGIQPTVVGYTSAVSALAHCG 716
Query: 311 NL 312
+
Sbjct: 717 EV 718
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 77/414 (18%), Positives = 149/414 (35%), Gaps = 55/414 (13%)
Query: 136 LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE-------------- 181
LAL ++ R +A YG Y IK GR D AA L E
Sbjct: 212 LALSMI--REMEAEYGIKPNHITYQAAIKVCGRCGKADEAASLLIEMKDGGVPLKTSVYS 269
Query: 182 -------------AANKHLKTIGTYNALLGAYMYN---------GLSDKCQSLFRDLKKE 219
AA L+ I + + YN G ++ L +++
Sbjct: 270 AVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREV 329
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
+ P +VTYN +++ G+ + F+E+ + + P+V ++ I+ + + +
Sbjct: 330 GGVEPDVVTYNIVVAACGKAGQGEKAIEIFREMSEVGIKPDVISFTTAISACGSCGLSEE 389
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHVDGKEFPLIR--- 335
I++ M+ V P+ T+ ++ +G ++ E+V
Sbjct: 390 ALSIFREMERAGVRPNIITHNAVMSACIAAGQWEEALDFFTEVVDGSGAANGGGGGGPPP 449
Query: 336 -----AMICAY----SKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLE-E 385
A C+Y S C V ++ + +L+R +P++ +P + + A C E +
Sbjct: 450 DPVEVADACSYNTALSACEVGEQWGRALSLLRDMPKRGVKPVVISYNTVISACGKCGEGD 509
Query: 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445
++ + + V +++ D ++ AG Y S +
Sbjct: 510 QALALLREMPERGLMPDVITFNSAIAALSNSGRPDDAVRLMREMPRAGVAADAITYSSAL 569
Query: 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
A R E+ S+L+EM+ + T A CG+ K ++ L L+
Sbjct: 570 TGLAHAGRWEQALSLLREMQGAGV---SPTVICYTAAIRACGEAGKGDEALLLL 620
Score = 45.8 bits (107), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 1/123 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY++ L + G ++ SL R+++ A +SP+++ Y I G D +E
Sbjct: 564 TYSSALTGLAHAGRWEQALSLLREMQG-AGVSPTVICYTAAIRACGEAGKGDEALLLLRE 622
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + ++PN+F+Y+ I+ W + + M A + P+ Y + G G
Sbjct: 623 MPTAGVTPNLFSYSATISACGKDGRWEQGLALLNEMPALGLTPNEFCYTAAITGCGIGGQ 682
Query: 312 LPR 314
R
Sbjct: 683 WER 685
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 105/223 (47%), Gaps = 8/223 (3%)
Query: 102 VFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTK 161
+F + ++G L R N A V+ + G + A E+L + + T T
Sbjct: 319 IFHAMKQQGFALDARAYN--AVVDGFCKSGKVHK-AYEILEEMKEKCVQPTVATYGAIVD 375
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G+ +I+ +D A LF EA +K ++ + Y++L+ + G D+ + ++ K+
Sbjct: 376 GL---AKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG 432
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
++P++ T+N+L+ + ++ FQ +K+ PN +TY+ LI G + K
Sbjct: 433 -LTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKA 491
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+Q M+ ++P+ TY ++ G A GN+ ++E K
Sbjct: 492 FVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFK 534
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 2/152 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I G++ +D A + E K L + T+N+LL A + ++ F+ +K
Sbjct: 405 YSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMK 464
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E P+ TY+ LI+ R+ + +Q+++ L PNV TY +I+G
Sbjct: 465 -EMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNI 523
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+++ KA +PD ++ L+ G +++
Sbjct: 524 TDAYSLFERFKANGGIPDAASFNALIEGMSNA 555
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
+ ++ ++N++L D+ SLF +KK+A P+ TYN +I + L L +E
Sbjct: 85 IPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA--EPNSSTYNIIIDM---LCLGGRVE 139
Query: 247 AAFQ---EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP---VMPDTNTYL 300
A++ E++ ++L PN+ T N ++ A K+EE Y++ ++ PD TY
Sbjct: 140 EAYRILDEMEHASLFPNLLTVNIMVDRLCKAR---KLEEAYKIFESASQRGCNPDCVTYC 196
Query: 301 LLLRGYAHSGNLPRMEKIYE 320
L+ G G + +++E
Sbjct: 197 SLIDGLGKKGQVDEAYRLFE 216
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 50/263 (19%), Positives = 105/263 (39%), Gaps = 24/263 (9%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
F +LK + + P V+Y ++I V + + E F +++ P + YN +I GY
Sbjct: 5 FFHELKAQG-LKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGY 63
Query: 272 MTAWMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD- 327
+A G+ E+ Y++ ++ +P ++ +L + ++E++K +
Sbjct: 64 GSA---GRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEP 120
Query: 328 -GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL-NVLLIRVYAKEDC--- 382
+ +I M+C ++E R++ E E+ N+L + + C
Sbjct: 121 NSSTYNIIIDMLCLGG---------RVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKAR 171
Query: 383 -LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLY 441
LEE K A + + V ++ + VD+ ++ AG +Y
Sbjct: 172 KLEEAYKIFESASQRGCNPDCVTYCS-LIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVY 230
Query: 442 HSKMVMYASQRRVEEMESVLKEM 464
S + + R E+ + KE+
Sbjct: 231 TSLIRNFFIHGRKEDGHKIFKEL 253
>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 583
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/334 (20%), Positives = 138/334 (41%), Gaps = 12/334 (3%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
N +T+ L+ + G + Q++F +L +E + P+++TY TL++ R
Sbjct: 15 GNNSCQTVHARTKLMNTLIGKGKPHEAQAVFNNLTEEGH-KPTLITYTTLVAALTRQKRF 73
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTY 299
+ A ++ D+ + P+ N +I + + GKV+E I+Q MK P T+TY
Sbjct: 74 KSIPALLSKVADNGMKPDSILLNAMINAFSES---GKVDEAMKIFQKMKEYGCKPTTSTY 130
Query: 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359
L++G+ +G K+ E++ + K P R ++++ ++
Sbjct: 131 NTLIKGFGIAGRPYESMKLLEMMGQDENVK--PNDRTYNILIQAWCTKKKLEEAWNVLHK 188
Query: 360 IPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN 417
+ +P + + R YA+ E E+ I + R I+S Y +
Sbjct: 189 MVASGIQPDVVTYNTMARAYAQNGETERAERLI-LKMPYNIVKPNERTCGIIISGYCKEG 247
Query: 418 AVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW 477
+ + F+ R + G +++S + Y ++ L ME + I TF
Sbjct: 248 NMPEALRFLYRMKELGVDPNPVVFNSLIKGYLDTTDTNGVDEALTLMEEFGIKPDVVTFS 307
Query: 478 IMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
+ A+++ G ++ M K G + ++A+
Sbjct: 308 TIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAY 341
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/336 (19%), Positives = 133/336 (39%), Gaps = 9/336 (2%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
VD A +F + K T TYN L+ + G + L + ++ N+ P+ TYN
Sbjct: 108 VDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDENVKPNDRTYN 167
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
LI + ++ ++ S + P+V TYN + Y + E + M
Sbjct: 168 ILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAERLILKMPYN 227
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
V P+ T +++ GY GN+P + +Y + + VD + ++I Y + T+
Sbjct: 228 IVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPV-VFNSLIKGYLDTTDTNG 286
Query: 350 IKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMR 407
+ EAL L+ E +P + ++ ++ +E E+ ND + +
Sbjct: 287 VD--EALT-LMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIE-PDIHAYS 342
Query: 408 CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467
+ Y R K + G + ++ + + + + +++ + ++M
Sbjct: 343 ILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEM 402
Query: 468 KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ KT+ + + Y Q K ++L M + G
Sbjct: 403 GTSPNLKTYETLIWGYGEAKQPWKAEELLTTMEERG 438
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 85/235 (36%), Gaps = 53/235 (22%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C F+ MK+LG P P+ KG
Sbjct: 242 GYCKEGNMPEALRFLYRMKELGVDP-----------------NPVVFNSLIKGYLDTTDT 284
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDL------------- 216
N VD A L E K + T++ ++ A+ GL + C+ +F D+
Sbjct: 285 NGVDEALTLMEEFGIK--PDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYS 342
Query: 217 -------------KKEA--------NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
K EA + P++V + T+IS + +D +++ +
Sbjct: 343 ILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEM 402
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
SPN+ TY LI GY A K EE+ M+ V+P+ +T L+ + G
Sbjct: 403 GTSPNLKTYETLIWGYGEAKQPWKAEELLTTMEERGVVPEMSTMQLVADAWRAIG 457
>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 779
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 10/203 (4%)
Query: 192 TYNALLGAYMYNGLS-DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TYN ++ A GL + LF ++ E I P I+TYNTL+S LV+ F+
Sbjct: 146 TYNTVINACAKGGLEWEGLLGLFAQMRHEG-IQPDIITYNTLLSACSSRGLVEEAGMVFR 204
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ ++ + P+ TYN L+ Y A V E+ + M+ PD Y +L+ Y +G
Sbjct: 205 TMNEAGVVPDSITYNALVDIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAG 264
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
K+++ ++ + ++ AY K D ++ + M+ E+ P +N
Sbjct: 265 KYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMK---ERGTEPDVN 321
Query: 371 V--LLIRVYAKEDCLEEMEKSIN 391
LI+V+ + +E SIN
Sbjct: 322 TYNTLIQVFGQGGFFQE---SIN 341
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 17/162 (10%)
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEA--ANKHLKTIG------TYNALLGAYM 201
Y TP T F G I AA L++EA A +K G TYNAL+GA+
Sbjct: 385 YVTPTTD-------GFTGLITAYGNAA-LYSEATYAFNSMKESGCKPDLETYNALIGAHA 436
Query: 202 YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV 261
GL + S + + E IS + TYN+LI FGR L D ++++++ SPN
Sbjct: 437 GGGLYCEAGSAYLTMIDEG-ISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNR 495
Query: 262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
TY L+ Y TA ++ + + + ++ G +P ++Y LLL
Sbjct: 496 HTYEALMGVYCTAGLFDEAKAQFLDLQVGGELPSVDSYCLLL 537
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 111/279 (39%), Gaps = 13/279 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YN L+ AY G +F+ ++ EA +P +VT++TL+ +G+ D + F +
Sbjct: 252 AYNILIEAYGRAGKYRAAAKMFKQMQ-EAGCTPDVVTFSTLLEAYGKHGCYDEVRLLFTD 310
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K+ P+V TYN LI + + + ++ + G V PD +TY LL G
Sbjct: 311 MKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYSCGKGGL 370
Query: 312 LPRMEKIYELVKHHVDGKEFPL---IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+KI+ +H + P +I AY ++ M+ E +P
Sbjct: 371 HKAAKKIH---RHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMK---ESGCKPD 424
Query: 369 LNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L LI +A E + + S V ++ ++ R D F
Sbjct: 425 LETYNALIGAHAGGGLYCEAGSAYLTMIDEGISA-DVSTYNSLIEAFGRGGLFDDAIEFS 483
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+ E A R Y + M +Y + +E ++ +++
Sbjct: 484 RDMEEARCSPNRHTYEALMGVYCTAGLFDEAKAQFLDLQ 522
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 96/256 (37%), Gaps = 53/256 (20%)
Query: 96 VDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMT 155
V++ VFR ++E G N A V++ Q R E+L QAG +
Sbjct: 196 VEEAGMVFRTMNEAGVVPDSITYN--ALVDIYGQ-ADRHEGVGELLR-EMEQAGNAPDVV 251
Query: 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG------TYNALLGAYMYNGLSDKC 209
Y I+ GR AA +F K ++ G T++ LL AY +G D+
Sbjct: 252 A--YNILIEAYGRAGKYRAAAKMF-----KQMQEAGCTPDVVTFSTLLEAYGKHGCYDEV 304
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY----- 264
+ LF D+K E P + TYNTLI VFG+ F ++ D + P++ TY
Sbjct: 305 RLLFTDMK-ERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLY 363
Query: 265 ------------------------------NYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294
LI Y A ++ + + MK P
Sbjct: 364 SCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKESGCKP 423
Query: 295 DTNTYLLLLRGYAHSG 310
D TY L+ +A G
Sbjct: 424 DLETYNALIGAHAGGG 439
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ TY LL + GL + + R + ++ ++P+ + LI+ +G L AF
Sbjct: 355 MSTYAGLLYSCGKGGLHKAAKKIHRHML-QSYVTPTTDGFTGLITAYGNAALYSEATYAF 413
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+K+S P++ TYN LI + ++ + Y M + D +TY L+ +
Sbjct: 414 NSMKESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFGRG 473
Query: 310 G 310
G
Sbjct: 474 G 474
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%)
Query: 175 AADLFAEAANKHLKTI--------GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
L+ EA + +L I TYN+L+ A+ GL D RD++ EA SP+
Sbjct: 437 GGGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDME-EARCSPNR 495
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TY L+ V+ L D +A F +++ P+V +Y L++ W ++ +
Sbjct: 496 HTYEALMGVYCTAGLFDEAKAQFLDLQVGGELPSVDSYCLLLSVCARRNRWDDASKVLEE 555
Query: 287 MKAGPVMPDT-NTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDG 328
M P MP +L+G G N R+E ++ +K VDG
Sbjct: 556 MLE-PNMPSIYGVVGGILKGEMDDGTNWQRVEYAFDGLK--VDG 596
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 4/161 (2%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T + L+ AY L + F +K E+ P + TYN LI L +A
Sbjct: 389 TTDGFTGLITAYGNAALYSEATYAFNSMK-ESGCKPDLETYNALIGAHAGGGLYCEAGSA 447
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ + D +S +V TYN LI + ++ E + M+ P+ +TY L+ Y
Sbjct: 448 YLTMIDEGISADVSTYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEALMGVYCT 507
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
+G E + + V G E P + + S C+ +R
Sbjct: 508 AGLFD--EAKAQFLDLQV-GGELPSVDSYCLLLSVCARRNR 545
Score = 38.5 bits (88), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 7/229 (3%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K LF+ +++ P+ Y +I + GR ++D F+++ +++ NV+++ L
Sbjct: 56 KALRLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKASELFEDMPLNDVEWNVYSFTAL 115
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHV 326
I Y + MK V P+ TY ++ A G + ++ ++H
Sbjct: 116 INAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRH-- 173
Query: 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLE 384
+G + P I S CS +++ + R + E P L+ +Y + D E
Sbjct: 174 EGIQ-PDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHE 232
Query: 385 EMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
+ + + + E + V ++ +Y R A K+ + AG
Sbjct: 233 GVGELLRE-MEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAG 280
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 11/187 (5%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL 196
A+E N + + G +T YT I+ +NN++ A +LF E L+ + +A+
Sbjct: 470 AVEFFNEMQGKGLKGNAVT---YTALIRAFCNVNNIEKAMELFDEM----LEAGCSPDAI 522
Query: 197 LGAYMYNGLSDKCQ----SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+ + +GLS + S KEA SP IV++N LI+ F R +D +E+
Sbjct: 523 VYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEM 582
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+++ + P+ TYN LI+ + + + + M ++P TY L+ Y +GNL
Sbjct: 583 ENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNL 642
Query: 313 PRMEKIY 319
KI+
Sbjct: 643 DEAMKIF 649
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ TY AL+ AY NG D+ +FRD+ + + P+ V YN LI+ R VD +
Sbjct: 625 TVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSL 684
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
++K + PN T+N + G K E+ M PD T +L +
Sbjct: 685 MDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSA 744
Query: 309 SGNLPRMEKIYE 320
G +++ +
Sbjct: 745 VGETAKLKSFVQ 756
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 101/238 (42%), Gaps = 16/238 (6%)
Query: 95 NVDDLDKVFRVLDE--KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGT 152
NV++++K + DE + C Y + + Q G R + VL+ + ++AG+
Sbjct: 498 NVNNIEKAMELFDEMLEAGC-SPDAIVYYTLISGLSQAGKLDRASF-VLS-KMKEAGFSP 554
Query: 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQS 211
+ + I R N +D A ++ E N +K G TYN L+ + G
Sbjct: 555 DIVS--FNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHR 612
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD----SNLSPNVFTYNYL 267
L + + KE + P++VTY LI + L +++ A + +D S + PN YN L
Sbjct: 613 LMKKMVKEG-LVPTVVTYGALIHAY---CLNGNLDEAMKIFRDMSSTSKVPPNTVIYNIL 668
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
I + MK V P+TNT+ + +G L + ++ + + H
Sbjct: 669 INSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEH 726
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 85/200 (42%), Gaps = 13/200 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ G ++ L ++ + P+ VTYN LI + + +++ F +
Sbjct: 382 TYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQ 441
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + PNV T N L+ G E + M+ + + TY L+R + + N
Sbjct: 442 MNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNN 501
Query: 312 LPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ EK EL ++ P + +I S+ DR + + M+ E + P
Sbjct: 502 I---EKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMK---EAGFSPD 555
Query: 369 L---NVLLIRVYAKEDCLEE 385
+ NV LI + +++ L+E
Sbjct: 556 IVSFNV-LINGFCRKNKLDE 574
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/341 (17%), Positives = 125/341 (36%), Gaps = 42/341 (12%)
Query: 203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF 262
+G +D+ + L K + + + N L++ GR M E+K+ ++ PNV
Sbjct: 283 SGRTDRAWDVLHGLMKLGGVMEA-ASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVV 341
Query: 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGP-----VMPDTNTYLLLLRGYAHSGN------ 311
T+ LI + E+++ M G V PD TY L+ G G
Sbjct: 342 TFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLG 401
Query: 312 -----------LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM--- 357
+P L+ + R + +K V + + L+
Sbjct: 402 LVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGM 461
Query: 358 ----RLIPEKEYRPWLN-----------VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTT 402
R+ E+ + LIR + + +E+ + ++ E S
Sbjct: 462 CKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDA 521
Query: 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
+ + ++S + +D+ + + + + AG+ ++ + + + +++E +LK
Sbjct: 522 I-VYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLK 580
Query: 463 EMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
EMEN I T+ + ++ G ++++ M K G
Sbjct: 581 EMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEG 621
>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
Length = 661
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+++ + + D + +F DL SP +VT+NT+I V+ R VD +E
Sbjct: 398 TYNSMIYGFCKHNRFDDAKHMF-DLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLRE 452
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
I L N TYN LI G+ ++++Q M + V PDT T +LL G+ +
Sbjct: 453 ISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEK 512
Query: 312 LPRMEKIYELV---KHHVDGKEFPLIRAMICAYSK 343
L +++E++ K +D + +I +C SK
Sbjct: 513 LEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSK 547
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 104/254 (40%), Gaps = 22/254 (8%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTP--MTKEEYTKGIKFAG 167
G CL R S A M + GS +E+ G TP +T G+ G
Sbjct: 185 GLCLEDRISEALALFGYMVETGSLFDQMVEI--------GL-TPVVITFNTLINGLCLEG 235
Query: 168 RINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R+ AA L + K L + TY ++ G + +L ++ E +I P +
Sbjct: 236 RVLE---AAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKME-ETHIKPDV 291
Query: 227 VTYNTLISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
V Y+ +I RL H A F E+ + ++PNVFTYN +I G+ + W + +
Sbjct: 292 VIYSAIID---RLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRL 348
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+ M + PD T+ L+ G L EK+ + + H + +MI + K
Sbjct: 349 LRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCK 408
Query: 344 CSVTDRIKKIEALM 357
+ D K + LM
Sbjct: 409 HNRFDDAKHMFDLM 422
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 5/204 (2%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL--KTI 190
R + E + R + G Y I ++N++ A DLF E + + TI
Sbjct: 439 RAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTI 498
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
T N LL + N ++ LF ++ + + I V YN +I + VD F
Sbjct: 499 -TCNILLYGFCENEKLEEALELF-EVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFC 556
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + P+V TYN +I+G+ ++ MK PD +TY L+RG +G
Sbjct: 557 SLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAG 616
Query: 311 NLPR-MEKIYELVKHHVDGKEFPL 333
+ + +E I E+ + G F +
Sbjct: 617 EIDKSIELISEMRSNGFSGDAFTI 640
>gi|410110075|gb|AFV61117.1| pentatricopeptide repeat-containing protein 123, partial
[Burroughsia fastigiata]
Length = 348
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 76 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLV 134
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN +I Y K + Q M++ +
Sbjct: 135 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIE 194
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 195 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKRL 254
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 52/262 (19%), Positives = 109/262 (41%), Gaps = 11/262 (4%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK + P +V YNT+I VFG+ L + E+K + ++PN +Y+ L
Sbjct: 5 KAISIFSRLKS-SGYXPDLVAYNTMIIVFGKAKLFREARSLISEMKTAGVTPNTTSYSTL 63
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + ++ M+ + D T +++ Y G +K++ ++
Sbjct: 64 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 123
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCL 383
++ Y + + L RL+ K NV+ +I +Y K
Sbjct: 124 EPNVVSYNTLVRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMIMIYGKTLEH 178
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
E+ I + ++ I+S + + +D+ A ++ S+G + + L+ +
Sbjct: 179 EKANNLIQEMQSRGIEPNSI-TYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQT 237
Query: 444 KMVMYASQRRVEEMESVLKEME 465
+V Y V + +L E++
Sbjct: 238 MIVAYERAGLVAHAKRLLHELK 259
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 22/166 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 140 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG-IEPN 196
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + +I Y A + + +
Sbjct: 197 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKRLLH 256
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+K +P DT ++L G R+E+ + + +D E
Sbjct: 257 ELKRPDNIPRDTAIHILAGAG--------RIEEATYVFRQAIDAGE 294
>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 719
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 108/246 (43%), Gaps = 21/246 (8%)
Query: 168 RINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
RI V+LA ++ E + + + T N ++ A +G +K + +++ E + P I
Sbjct: 202 RIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQ-EKGVYPDI 260
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTYNTLIS + L++ + SP V+TYN +I G + + +E++
Sbjct: 261 VTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAE 320
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346
M + PD+ TY LL G+ E I+ D + ++ ++C S S+
Sbjct: 321 MLRSGLSPDSTTYRSLLMEACKKGDAVETENIFS------DMRSRDVVPDLVCFSSMMSL 374
Query: 347 TDRIKKIE-ALM--------RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397
R ++ ALM LIP+ + +LI+ Y ++ + E N+ +
Sbjct: 375 FTRSGNLDKALMYFNSVKEAGLIPDN----VIYTILIQGYCRKGMISEAMNLRNEMLQQG 430
Query: 398 TSVTTV 403
++ V
Sbjct: 431 CAMDVV 436
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 108/249 (43%), Gaps = 41/249 (16%)
Query: 100 DKVFRVLDEKG--------SCLFRRH---SNGYAFVELMKQLGSRPRLALEVLNWRRRQA 148
DK+F + E+G + L H N +EL K++ + R+ L+V+ +
Sbjct: 455 DKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEK-RIKLDVVTYNTLLD 513
Query: 149 GYGTP-------------MTKEEYTKGIKFAGRIN------NVDLAADLFAEAANKHLK- 188
G+G ++KE I F+ +N ++ A ++ E +K +K
Sbjct: 514 GFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKP 573
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ N+++ Y +G + + + E + P ++YNTLI F + ++M A
Sbjct: 574 TVMICNSMIKGYCRSGNASDGEIFLEKMISEGFV-PDCISYNTLIYGFVK---EENMSKA 629
Query: 249 F-----QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
F E K L P+VFTYN ++ G+ + E + + M V PD +TY L+
Sbjct: 630 FGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLI 689
Query: 304 RGYAHSGNL 312
G+ NL
Sbjct: 690 NGFVSQDNL 698
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/333 (20%), Positives = 134/333 (40%), Gaps = 18/333 (5%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+++++ + +G DK F +K EA + P V Y LI + R ++ E+
Sbjct: 368 FSSMMSLFTRSGNLDKALMYFNSVK-EAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEM 426
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ +V TYN ++ G M G+ ++++ M + PD+ T +L+ G+ GNL
Sbjct: 427 LQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNL 486
Query: 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM---RLIPEKEYRPWL 369
++++ +K + ++ + K D K+I A M ++P P
Sbjct: 487 QNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPT----PIS 542
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
+L+ + L E + + D K+ TV I ++ Y R F+++
Sbjct: 543 FSILVNALCSKGHLSEAFR-VWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKM 601
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC--G 487
S G+ Y++ + + + + + ++K+ME + F + C
Sbjct: 602 ISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCREN 661
Query: 488 QRRKVNQVLGLMCKNG-------YDVPVNAFPS 513
Q ++ VL M + G Y +N F S
Sbjct: 662 QMKEAEAVLRKMIERGVNPDRSTYTSLINGFVS 694
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 100/248 (40%), Gaps = 18/248 (7%)
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
SI N LI R+ V+ +QEI S + NV+T N ++ KV
Sbjct: 189 SIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFL 248
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF-PLI---RAMICA 340
++ V PD TY L+ Y+ G ME+ +EL+ H + K F P + +I
Sbjct: 249 SEVQEKGVYPDIVTYNTLISAYSSQG---LMEEAFELM-HAMPSKGFSPGVYTYNTVING 304
Query: 341 YSKCSVTDRIKKIEALM---RLIPEK-EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396
K +R K++ A M L P+ YR LL+ K D +E ++I
Sbjct: 305 LCKHGKYERAKEVFAEMLRSGLSPDSTTYRS----LLMEACKKGDAVE--TENIFSDMRS 358
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
+ V + ++S + R +DK + + AG +Y + Y + + E
Sbjct: 359 RDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISE 418
Query: 457 MESVLKEM 464
++ EM
Sbjct: 419 AMNLRNEM 426
>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 706
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
GR V A +F E N K I +YN+L+ NG D+ FR+++ E ++P
Sbjct: 330 GRAGKVYEAIKIFEELENSDCKPDIISYNSLINCLGKNGDLDEAHIRFREMQ-EKGLNPD 388
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+VTY+TLI FG+ V+ F E+ PN+ TYN L+ + + ++Y
Sbjct: 389 VVTYSTLIECFGKTDKVEMACRLFDEMLAEGCFPNIVTYNILLDCLERSGRTAEAVDLYA 448
Query: 286 MMKAGPVMPDTNTYLLLLR 304
+K + PD+ TY +L R
Sbjct: 449 KLKQQGLTPDSITYSVLER 467
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 1/138 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I +N LL A + D+ +F D+KK+ + P TY +I + GR+ +D A F
Sbjct: 77 IFAFNMLLDALAKDQKVDQAFKVFEDMKKK-HCEPDEYTYTIMIRMTGRIGKLDESLALF 135
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E+ + SPN+ YN +I + M K ++ M P+ TY ++L A
Sbjct: 136 EEMLNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMMEKNCRPNEFTYSVILTLLAAE 195
Query: 310 GNLPRMEKIYELVKHHVD 327
G L +++K+ EL + +++
Sbjct: 196 GQLHKLDKVVELSRKYMN 213
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E I+ + YNT+ + GRL + H+ ++++K P++FTYN LI+ + A G
Sbjct: 277 EKGINTDTIMYNTVFTALGRLKQISHLYDLYEKMKLDGPLPDIFTYNILISSFGRA---G 333
Query: 279 KVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
KV E I++ ++ PD +Y L+ +G+L
Sbjct: 334 KVYEAIKIFEELENSDCKPDIISYNSLINCLGKNGDL 370
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 83/206 (40%), Gaps = 13/206 (6%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFR--DLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
TI T N L+G + ++C L DLK TY L+ + R D+
Sbjct: 9 TISTVNILIGFFGDGEDLERCIGLIEKWDLKMNG------YTYKCLVQAYLRSCDSDNGF 62
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
+ E+K + ++F +N L+ + ++++ MK PD TY +++R
Sbjct: 63 RVYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIRMT 122
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
G L ++E + + MI A + + D K L + EK R
Sbjct: 123 GRIGKLDESLALFEEMLNKGCSPNLIAYNTMIQALANSRMVD---KTILLFSKMMEKNCR 179
Query: 367 P--WLNVLLIRVYAKEDCLEEMEKSI 390
P + +++ + A E L +++K +
Sbjct: 180 PNEFTYSVILTLLAAEGQLHKLDKVV 205
>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 666
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+++ + + D + +F DL SP +VT+NT+I V+ R VD +E
Sbjct: 403 TYNSMIYGFCKHNRFDDAKHMF-DLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLRE 457
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
I L N TYN LI G+ ++++Q M + V PDT T +LL G+ +
Sbjct: 458 ISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEK 517
Query: 312 LPRMEKIYELV---KHHVDGKEFPLIRAMICAYSK 343
L +++E++ K +D + +I +C SK
Sbjct: 518 LEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSK 552
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 104/255 (40%), Gaps = 19/255 (7%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYG-TP--MTKEEYTKGIKFA 166
G CL R S A M + G LE + + G TP +T G+
Sbjct: 185 GLCLEDRISEALALFGYMVETG-----FLEAVALFDQMVEIGLTPVVITFNTLINGLCLE 239
Query: 167 GRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
GR+ AA L + K L + TY ++ G + +L ++ E +I P
Sbjct: 240 GRVLE---AAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKME-ETHIKPD 295
Query: 226 IVTYNTLISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
+V Y+ +I RL H A F E+ + ++PNVFTYN +I G+ + W +
Sbjct: 296 VVIYSAIID---RLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQR 352
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342
+ + M + PD T+ L+ G L EK+ + + H + +MI +
Sbjct: 353 LLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFC 412
Query: 343 KCSVTDRIKKIEALM 357
K + D K + LM
Sbjct: 413 KHNRFDDAKHMFDLM 427
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 5/204 (2%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL--KTI 190
R + E + R + G Y I ++N++ A DLF E + + TI
Sbjct: 444 RAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTI 503
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
T N LL + N ++ LF ++ + + I V YN +I + VD F
Sbjct: 504 -TCNILLYGFCENEKLEEALELF-EVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFC 561
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + P+V TYN +I+G+ ++ MK PD +TY L+RG +G
Sbjct: 562 SLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAG 621
Query: 311 NLPR-MEKIYELVKHHVDGKEFPL 333
+ + +E I E+ + G F +
Sbjct: 622 EIDKSIELISEMRSNGFSGDAFTI 645
>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
Length = 841
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I + NN+DLA + E NK ++ + Y AL+ + G L +L+
Sbjct: 611 YTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQ 670
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAF---QEIKDSNLSPNVFTYNYLIAGYMTA 274
E +SP+ V Y+++IS F +L +MEAA + + + + ++ Y LI+G +
Sbjct: 671 -EVGLSPNKVVYSSMISGFRKL---QNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKE 726
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
E+Y M A +MPD TY +L+ G + G L +KI E
Sbjct: 727 GKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILE 772
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 2/155 (1%)
Query: 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
++D A +F E K LK + TY+ L+ Y G ++ L+ ++ E NI+PS T
Sbjct: 483 DMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGE-NIAPSDFTC 541
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
N +I+ + + +++ P TYN +I G++ +Y M
Sbjct: 542 NIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCK 601
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
V P+ TY L+ G+ S N+ K+ + +K+
Sbjct: 602 IGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKN 636
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T N ++ G + + Q + L +E I P+ +TYN +I F + V+ A + E
Sbjct: 540 TCNIIINGLCKAGRTSESQDRLKKLVQEGFI-PTCMTYNCIIDGFVKEGSVNSALAVYTE 598
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +SPNVFTY LI G+ + ++ MK + D Y L+ G+ G+
Sbjct: 599 MCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGD 658
Query: 312 L 312
+
Sbjct: 659 M 659
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 10/167 (5%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKC 209
G K Y+ I ++ N++ A L N+ + + Y L+ + G
Sbjct: 673 GLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFA 732
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
L+ ++ + I P ++TY+ LI +++ + +++ ++P VF YN LI
Sbjct: 733 SELYAEMLAKG-IMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLIT 791
Query: 270 GYMTAWMWGKVEEIY----QMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
G+ G ++E + +M+ G ++PD TY +L+ G GNL
Sbjct: 792 GHFKE---GNLQEAFRLHNEMLDKG-LVPDDTTYDILVNGKVKDGNL 834
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ Y G D LF D E I P+ VTY +I + +D + ++K+
Sbjct: 335 LMKGYCKQGDLDSALELF-DKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNK 393
Query: 256 NLSPNVFTYNYLIAGYMTA 274
++SP VF N LI GY+ A
Sbjct: 394 DISPTVFNVNSLIRGYLKA 412
>gi|22128708|gb|AAM92820.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31432840|gb|AAP54427.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
Length = 517
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P +V+Y T+I+ F + D + + E+ D +SPNV TY+ +IA A K E+
Sbjct: 339 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAMEV 398
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI--RAM---I 338
M VMPD TY +L GY SG P+ E I L K DG E ++ R++ +
Sbjct: 399 LNTMVKNGVMPDCMTYNSILHGYCSSGQ-PK-EAIGTLKKMRSDGVEPNVVTYRSLMNYL 456
Query: 339 CAYSKCSVTDRIKKIEALMRLIPE-KEYRPWLNVLLIRVYAKEDCLEEM 386
C +C+ +I L P+ YR L++ YA + L EM
Sbjct: 457 CKNGRCTEARKIFDSMTKRGLEPDIATYR-----TLLQGYATKGALVEM 500
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 100/229 (43%), Gaps = 9/229 (3%)
Query: 97 DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPM 154
D +D V R + E SC+ + ++ L+K L +R + ALE+L+ G G+P
Sbjct: 285 DAMDIVLRRMTEL-SCM----PDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSPP 339
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLF 213
YT I + + D A + E ++ + + TY++++ A DK +
Sbjct: 340 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAMEVL 399
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+ K + P +TYN+++ + ++++ + PNV TY L+
Sbjct: 400 NTMVKNG-VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCK 458
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
+ +I+ M + PD TY LL+GYA G L M + +L+
Sbjct: 459 NGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLM 507
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 107/237 (45%), Gaps = 14/237 (5%)
Query: 175 AADLFAEAANKHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
A DL + A HL+++G TY AL+ A+ ++ L +++ E P++VT
Sbjct: 38 AGDL--DGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMR-ERGCPPNLVT 94
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN L+ +L +V + +++ + +PNV T+N L+ G+ ++ +M
Sbjct: 95 YNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMV 154
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
A + P+ TY L+ G S +++ E +K + A+I K D
Sbjct: 155 AKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCK---AD 211
Query: 349 RIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTV 403
+I++ E ++R + P + V +I + K L E +K++ + + + S V
Sbjct: 212 KIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVV 268
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 85/419 (20%), Positives = 167/419 (39%), Gaps = 24/419 (5%)
Query: 93 LANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRL--ALEVLNWRRRQAGY 150
+AN DLD L G N + L+ +L A+++L R +
Sbjct: 35 MANAGDLDGAMDHLRSMGC-----DPNVVTYTALIAAFARAKKLEEAMKLLEEMRER--- 86
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G P Y + +++ V A D+ + + T+N+L+ + G D
Sbjct: 87 GCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDA 146
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+ L + + + P++VTY+ LI + + +E+K S ++P+ FTY+ LI
Sbjct: 147 RKLLGIMVAKG-MRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIH 205
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329
G A + E++ + M PD Y ++ + SG L +K + ++
Sbjct: 206 GLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSP 265
Query: 330 EFPLIRAMI---CAYSKCSVTDRI-KKIEALMRLIPEK-EYRPWLNVLLIRVYAKEDCLE 384
+ +I C K + I +++ ++P+ Y +N L K D L
Sbjct: 266 DVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGL-----CKSDMLV 320
Query: 385 EMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSK 444
E +K ++ + + V I+ +C +++ ++ + AG Y +
Sbjct: 321 EAQKLLDRMCKAGCNPDVVTYTT-IIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTL 379
Query: 445 MVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ R+V+E E V++EM N + T+ M G+ ++ Q++ M K+G
Sbjct: 380 ISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRM-KDG 437
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 5/193 (2%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL 196
A + L R+Q +T G+ G+I + D E+ + L + TY+ +
Sbjct: 251 AQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDV-LPDVVTYSTV 309
Query: 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256
+ + + + Q L + K A +P +VTY T+I + ++ E Q +K +
Sbjct: 310 INGLCKSDMLVEAQKLLDRMCK-AGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAG 368
Query: 257 LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
+PNV TY LI+G A + E + + M+ P+ TY ++ G SG R++
Sbjct: 369 CAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSG---RIK 425
Query: 317 KIYELVKHHVDGK 329
+ +LV+ DG+
Sbjct: 426 EAQQLVQRMKDGR 438
>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g02750-like [Cucumis sativus]
Length = 741
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 131/290 (45%), Gaps = 31/290 (10%)
Query: 96 VDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMT 155
+DD K+F + EK S + NGY V + Q A E+LN Y
Sbjct: 280 IDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQ-------AREILN----LMPYKNIAA 328
Query: 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRD 215
+ G +GR+ D A ++F++ + ++ +N+++ Y + G +D+ LF++
Sbjct: 329 QTAMINGYLQSGRM---DEANEIFSQIS---VRDSVCWNSMITGYAHCGRTDEALRLFQE 382
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ + +V++NT+I+ + + +D F E+++ N V ++N LI GY+
Sbjct: 383 M-----VCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERN----VVSWNSLITGYVQNG 433
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
++ + + +MK PD T + LR A+ L +++ L G + +
Sbjct: 434 LYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKN 493
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE 385
A++ Y+K + R+ + E + I K+ W + LI YA C +E
Sbjct: 494 AILTMYAK---SGRVPEAENVFAEIKXKDVVSWNS--LIAGYALNGCGKE 538
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 142/336 (42%), Gaps = 45/336 (13%)
Query: 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
RI ++ A +LF +K T+ NAL+ Y L + + LF ++ + ++V
Sbjct: 120 RIGELEKARELFNLLPDKQ-DTV-CRNALIAGYAKKRLFREAKKLFDEM-----LVKNVV 172
Query: 228 TYNTLISVF---GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
++N+++S + G++ L A E NV ++N ++ GY+ G ++ +
Sbjct: 173 SWNSILSGYTKNGKMQLGLQFFEAMGE-------RNVVSWNLMVDGYVGV---GDLDSAW 222
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC 344
K P P+ +++ +L G+AH G + ++ + + K AMI AY +
Sbjct: 223 MFFKKIPT-PNVVSWVTMLSGFAHYGRMTEARNLF----NEMPTKNLVSWNAMIGAYVRE 277
Query: 345 SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR 404
+ D K L +PEK+ W +I Y + L + + +N + T
Sbjct: 278 NQIDDAYK---LFMEMPEKDSVSW--TAMINGYVRVGKLLQAREILNLMPYKNIAAQT-- 330
Query: 405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
+++ Y + +D+ AN + S +C ++S + YA R +E + +EM
Sbjct: 331 ---AMINGYLQSGRMDE-ANEIFSQISVRDSVC---WNSMITGYAHCGRTDEALRLFQEM 383
Query: 465 ENYKIDCSKKTFW-IMYYAYATCGQRRKVNQVLGLM 499
C W M AYA GQ K ++ M
Sbjct: 384 V-----CKDMVSWNTMIAAYAQAGQMDKALEMFNEM 414
>gi|255582603|ref|XP_002532083.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528243|gb|EEF30297.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 841
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 74/326 (22%), Positives = 140/326 (42%), Gaps = 23/326 (7%)
Query: 199 AYMYNGLS-----DKCQSLFRDLKKEANIS--PSIVTYNTLISVFGRLLLVDHMEAAFQE 251
A +++GL+ D QSLF ++ ++++ S+ YN +I + ++ F++
Sbjct: 219 ALLFDGLNKIRDFDGIQSLFDEMVQDSSKGGISSVYAYNRVIQHLAKAEKLELSFCCFKK 278
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++DS + TYN LI ++ + K EIY+ M+A D +TY L++ A SG
Sbjct: 279 VQDSGCKIDTQTYNALITSFLNKGLPYKAFEIYESMQAAQCSLDASTYELMIPSLAKSGR 338
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
L K+++ +K F + +++ + K D KI M+ + + V
Sbjct: 339 LDVAFKLFQEMKERKIRPSFGIFSSLVDSMGKSGRLDTSMKIYMEMQGFGLRSSAS-MYV 397
Query: 372 LLIRVYAKEDCL-------EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
LI Y K L +EM+K+ F + T+ I+ S+ + +D +
Sbjct: 398 SLIESYTKAGKLDTALRLWDEMKKA---GFRPNYGLYTL-----IIESHAKSGKLDIATS 449
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
K + AG+ S Y + M+A+ +V+ + M N + T+ + A
Sbjct: 450 IFKDMDKAGFLPTPSTYSCLLEMHAASGQVDSAMKLYNSMTNAGLKPGLSTYTALLTLLA 509
Query: 485 TCGQRRKVNQVLGLMCKNGYDVPVNA 510
+ ++L M G+ V V+A
Sbjct: 510 SKKLVDVAAKILLEMKAMGFSVDVSA 535
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 72/177 (40%), Gaps = 5/177 (2%)
Query: 93 LANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGT 152
LA LD F++ E R F L+ +G RL + + Q G+G
Sbjct: 333 LAKSGRLDVAFKLFQEMKERKIRPSFG--IFSSLVDSMGKSGRLDTSMKIYMEMQ-GFGL 389
Query: 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQS 211
+ Y I+ + +D A L+ E + G Y ++ ++ +G D S
Sbjct: 390 RSSASMYVSLIESYTKAGKLDTALRLWDEMKKAGFRPNYGLYTLIIESHAKSGKLDIATS 449
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
+F+D+ K A P+ TY+ L+ + VD + + ++ L P + TY L+
Sbjct: 450 IFKDMDK-AGFLPTPSTYSCLLEMHAASGQVDSAMKLYNSMTNAGLKPGLSTYTALL 505
>gi|363543445|ref|NP_001241732.1| salt-inducible protein [Zea mays]
gi|195610062|gb|ACG26861.1| salt-inducible protein [Zea mays]
Length = 716
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 81/349 (23%), Positives = 145/349 (41%), Gaps = 41/349 (11%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE--AANKHLKTIGT 192
RLAL++L+ G P+ Y+ I A R A + F AA+ L T
Sbjct: 208 RLALDMLD-------AGVPLDNITYSTLITAARRCRQFAKAVEWFERMYAADGVLPDEVT 260
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y+A+L Y G+ ++ +LF D + + P V + L +FG D ++ F+E+
Sbjct: 261 YSAVLDVYAQLGMKEEVLALF-DRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEM 319
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS--- 309
++ + PN+F YN L+ G +++ M V P+ T L + Y +
Sbjct: 320 REVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWG 379
Query: 310 -GNLPRMEKIYELVKHHVDGKEFPLIRAMIC--AYSKCSVTDRIKKIEALMRLIPEKEYR 366
L +K+ EL K D +++C S C+ + + E L + + E R
Sbjct: 380 RDALQLWDKMREL-KLPAD--------SILCNTLLSMCADVGLVAEAEQLFNEMKDPECR 430
Query: 367 P------WLNVLLIRVYAK----EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC 416
W +I +Y + L+ + + E T+ +++C+ ++
Sbjct: 431 DVPKPDKWSYTAMINIYGSNGDTDSALQLFAEMLKGGIEPNIMSYTI-VIQCLGKAHRIQ 489
Query: 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
AV+ L + +++ RLC L ++ +S EEME VL +E
Sbjct: 490 QAVEVLESGLEKGLKPDDRLCGCLL--SVIALSSG---EEMEMVLSSLE 533
>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 806
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+++ + + D + +F DL SP +VT+NT+I V+ R VD +E
Sbjct: 403 TYNSMIYGFCKHNRFDDAKHMF-DLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLRE 457
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
I L N TYN LI G+ ++++Q M + V PDT T +LL G+ +
Sbjct: 458 ISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEK 517
Query: 312 LPRMEKIYELV---KHHVDGKEFPLIRAMICAYSK 343
L +++E++ K +D + +I +C SK
Sbjct: 518 LEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSK 552
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 104/255 (40%), Gaps = 19/255 (7%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYG-TP--MTKEEYTKGIKFA 166
G CL R S A M + G LE + + G TP +T G+
Sbjct: 185 GLCLEDRISEALALFGYMVETG-----FLEAVALFDQMVEIGLTPVVITFNTLINGLCLE 239
Query: 167 GRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
GR+ AA L + K L + TY ++ G + +L ++ E +I P
Sbjct: 240 GRVLE---AAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKME-ETHIKPD 295
Query: 226 IVTYNTLISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
+V Y+ +I RL H A F E+ + ++PNVFTYN +I G+ + W +
Sbjct: 296 VVIYSAIID---RLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQR 352
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342
+ + M + PD T+ L+ G L EK+ + + H + +MI +
Sbjct: 353 LLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFC 412
Query: 343 KCSVTDRIKKIEALM 357
K + D K + LM
Sbjct: 413 KHNRFDDAKHMFDLM 427
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 7/179 (3%)
Query: 169 INNVDLAADLFAEAANKHL--KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
++N++ A DLF E + + TI T N LL + N ++ LF ++ + + I
Sbjct: 480 VDNLNAAQDLFQEMISHGVCPDTI-TCNILLYGFCENEKLEEALELF-EVIQMSKIDLDT 537
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
V YN +I + VD F + + P+V TYN +I+G+ ++
Sbjct: 538 VAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHK 597
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHVDGKEFPLIRA--MICAYS 342
MK PD +TY L+RG +G + + +E I E+ + G F + A +IC S
Sbjct: 598 MKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMAEEIICRVS 656
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 8/144 (5%)
Query: 168 RINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R VD L E + + L TYN L+ + + Q LF+++ + P
Sbjct: 444 RAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHG-VCPDT 502
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
+T N L+ F ++ F+ I+ S + + YN +I G KV+E + +
Sbjct: 503 ITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKG---SKVDEAWDL 559
Query: 287 MKAGP---VMPDTNTYLLLLRGYA 307
+ P V PD TY +++ G+
Sbjct: 560 FCSLPIHGVEPDVQTYNVMISGFC 583
>gi|399216092|emb|CCF72780.1| unnamed protein product [Babesia microti strain RI]
Length = 1520
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 5/185 (2%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG 191
+ P LE +N ++ +G + Y IKF +NV L+ E + + +
Sbjct: 921 NSPDHLLESVNKYKK---FGFHPDLQTYGLLIKFFSSSDNVMECFHLWNEMTSLYGYELN 977
Query: 192 --TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
TY + A + N + D+ SL +D+KK +NI P+ + Y+TLI FG+ ++ +
Sbjct: 978 EVTYGCMFDALVSNNMLDEALSLLKDMKKNSNIKPNTIIYSTLIKGFGQTKQLNKALNIY 1037
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ D + PN TYN +I K + + M + PD T+ +++GY
Sbjct: 1038 LTMLDEGVVPNTITYNSIIDACARVGDMNKAANLLEDMLNNNIEPDLITFSTVIKGYCVQ 1097
Query: 310 GNLPR 314
N+ R
Sbjct: 1098 SNMDR 1102
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 171 NVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
N+D + L + + +K G YN+LL + +G CQ L+ +++ E I+PS T
Sbjct: 1099 NMDRSLQLLRAMSERGIKPDGILYNSLLDGCVKSGRPWLCQQLWDEMQ-ENGIAPSNFTL 1157
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKD----SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
LI ++GRL ++ AFQ + + N+ N Y L++ +T + +++
Sbjct: 1158 TILIKMYGRL---GQLDKAFQLMDELPRKYNIQTNTHVYTCLMSACITNGKYKMALDVFN 1214
Query: 286 MMKAGPVMPDTNTYLLLLRG 305
M ++PD+ TY ++ G
Sbjct: 1215 CMNGNGIVPDSKTYETIIFG 1234
>gi|218197431|gb|EEC79858.1| hypothetical protein OsI_21342 [Oryza sativa Indica Group]
Length = 1013
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 2/175 (1%)
Query: 146 RQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNG 204
R G P + + + I G+ ++ A ++F+ A L TY +L Y G
Sbjct: 741 RMISSGIPRSMQTFNIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKTYTNMLSFYGKAG 800
Query: 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264
+ LF +K E I P +++NT+I+ + L + E FQE++ +N P+ TY
Sbjct: 801 KHHEASLLFSRMK-EDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVPDSHTY 859
Query: 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
LI Y + K EE QMM + P + L+ + G + +++Y
Sbjct: 860 LALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTHFNHLISAFLKEGQIDEAQRMY 914
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+++ T+N ++ Y G +K +F +E + TY ++S +G+ H EA
Sbjct: 749 RSMQTFNIMISVYGQGGKLEKAVEMF-SAAQELGLPIDEKTYTNMLSFYGKA--GKHHEA 805
Query: 248 A--FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ F +K+ + P ++N +I Y T+ + + E I+Q M+ +PD++TYL L+R
Sbjct: 806 SLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVPDSHTYLALIRA 865
Query: 306 YAHSGNLPRMEKIYELV 322
Y + E+ +++
Sbjct: 866 YTEGKCYSKAEEAIQMM 882
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKC 209
G P+ ++ YT + F G+ A+ LF+ ++ ++N ++ AY +GL ++
Sbjct: 781 GLPIDEKTYTNMLSFYGKAGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEA 840
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+ +F++++K ++ P TY LI + E A Q + SN++P+ +N+LI+
Sbjct: 841 EIIFQEMQKNNHV-PDSHTYLALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTHFNHLIS 899
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR-----GYAHSGNL 312
++ + + +Y M+ + D ++R GY G L
Sbjct: 900 AFLKEGQIDEAQRMYNQMEEAGIPADLACCRTMMRMHLDHGYVDDGIL 947
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 6/191 (3%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTY- 193
R A + W + Q Y + YT ++ G++ + LA F E +
Sbjct: 151 RQARDFFAWMKLQLCYEPSVVA--YTILLRLYGQVGKIKLAEVTFLEMLQAGCEPDAVAC 208
Query: 194 NALLGAYM-YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
LL AY + L+D +F + +I PSI +N ++S + L + ++++
Sbjct: 209 GTLLCAYARWGKLNDML--MFYAAVRRRDIVPSISVFNFMVSSLQKQKLHGKVIHLWEQM 266
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
++N++PN FTY +I Y M + + + MK +P+ TY LL+ A G
Sbjct: 267 LEANVAPNQFTYTVVIGSYAKEGMLEEAMDAFGEMKRRRFVPEEATYSLLISLCAKHGKG 326
Query: 313 PRMEKIYELVK 323
+Y+ +K
Sbjct: 327 EEALGLYDEMK 337
>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
Length = 932
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 107/280 (38%), Gaps = 17/280 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N + G D+ L + +E + P +VTYNT+I R V E +
Sbjct: 332 TFNIFIQGLCKEGSLDRAVRLLGCVSREG-LRPDVVTYNTVICGLCRKSRVVEAEECLHK 390
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + PN FTYN +I GY M I + PD TY L+ G+ G+
Sbjct: 391 MVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGD 450
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-----CSVTDRIKKIEALMRLIPEKEYR 366
+ +++ DG L R I Y+ C + ++ LM + EK +
Sbjct: 451 PDQAMAVFK------DGLGKGL-RPSIIVYNTLIKGLCQQGLILPALQ-LMNEMAEKGCK 502
Query: 367 P--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
P W L+I K CL + I DA K + + +V Y R +D
Sbjct: 503 PDIWTYNLIINGLCKMGCLSDANHLIGDAIT-KGCIPDIFTYNTLVDGYCRQLKLDSAIE 561
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
V R S G Y++ + + EE+ + K M
Sbjct: 562 LVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAM 601
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
V+ A DL E +K L + ++ L+ + G D LFR ++K+ ++S + TYN
Sbjct: 626 VNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYN 685
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
+IS F L + F E+K + P+ +TY LI G+ G V + Y+ +
Sbjct: 686 IIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKT---GNVNQGYKFL 739
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Query: 175 AADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A L +A K + I TYN L+ Y D L + + ++P ++TYNTL+
Sbjct: 524 ANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQG-MTPDVITYNTLL 582
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ + + + F+ + + +PN+ TYN +I + + ++ MK+ +
Sbjct: 583 NGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLT 642
Query: 294 PDTNTYLLLLRGYAHSGNLP-------RMEKIYEL 321
PD ++ L+ G+ G+L MEK Y++
Sbjct: 643 PDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDV 677
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 85/180 (47%), Gaps = 5/180 (2%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
I TYN ++ + + ++ L ++K + ++P +V++ TLI+ F ++ +D
Sbjct: 609 NIITYNTIIESLCNSKKVNEAVDLLGEMKSKG-LTPDVVSFGTLITGFCKVGDLDGAYGL 667
Query: 249 FQEI-KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
F+ + K ++S TYN +I+ + ++ MK PD TY +L+ G+
Sbjct: 668 FRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFC 727
Query: 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
+GN+ + Y+ + +++ P + + V ++++ ++ L+ +K+ P
Sbjct: 728 KTGNV---NQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVP 784
Score = 42.0 bits (97), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 65/152 (42%), Gaps = 3/152 (1%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y ++ + G +D+ + LF ++ E + P + T+N L+ + V E F ++
Sbjct: 263 YCTVVTGFYEFGDNDRARELFDEML-ECCLCPDVTTFNKLVHALCKKGFVLESERLFDKV 321
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ PN+FT+N I G + + + + PD TY ++ G +
Sbjct: 322 LKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRV 381
Query: 313 PRMEK-IYELVKHHVDGKEFPLIRAMICAYSK 343
E+ ++++V + +F ++I Y K
Sbjct: 382 VEAEECLHKMVNGGFEPNDFTY-NSIIDGYCK 412
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 57/122 (46%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ TY ++L ++G ++ ++L +++ + + Y + +GR +
Sbjct: 118 TLFTYKSMLQKLGFHGKFNEMENLLSEMRSNLDNTLLEGVYVEAMRFYGRKGKIQEAVDT 177
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F+ + N P+V++YN ++ + + + ++Y MK V D TY + ++ +
Sbjct: 178 FERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCR 237
Query: 309 SG 310
+G
Sbjct: 238 TG 239
>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74900, mitochondrial; AltName: Full=Protein
ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
Precursor
gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
Length = 482
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 22/212 (10%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G CL +R ++ M + G P L T KG AG+I
Sbjct: 204 GWCLIKRTPKALEVLKEMVERGINPNLT-----------------TYNTMLKGFFRAGQI 246
Query: 170 NNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ A + F E + + + TY ++ + G + +++F ++ +E + PS+ T
Sbjct: 247 RH---AWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREG-VLPSVAT 302
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN +I V + V++ F+E+ PNV TYN LI G A + + EE+ Q M+
Sbjct: 303 YNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRME 362
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
P+ TY +++R Y+ + + ++E
Sbjct: 363 NEGCEPNFQTYNMMIRYYSECSEVEKALGLFE 394
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 1/158 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN +L + G F ++KK + +VTY T++ FG + F E
Sbjct: 232 TYNTMLKGFFRAGQIRHAWEFFLEMKKR-DCEIDVVTYTTVVHGFGVAGEIKRARNVFDE 290
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + P+V TYN +I +++ M P+ TY +L+RG H+G
Sbjct: 291 MIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGE 350
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
R E++ + +++ F MI YS+CS ++
Sbjct: 351 FSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEK 388
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 2/148 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT + G + A ++F E + L ++ TYNA++ + +F ++
Sbjct: 268 YTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMV 327
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ P++ TYN LI E Q +++ PN TYN +I Y
Sbjct: 328 RRG-YEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEV 386
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
K +++ M +G +P+ +TY +L+ G
Sbjct: 387 EKALGLFEKMGSGDCLPNLDTYNILISG 414
>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 106/264 (40%), Gaps = 56/264 (21%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRL------------------ALEVLNWRRRQAGYG 151
G C R S+ + V+ M ++G RP + AL+ R+
Sbjct: 164 GFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRP 223
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQ 210
+T G+ +GR N+ AA L + + + + TY+ALL A++ NG + +
Sbjct: 224 NVVTYTALVNGLCNSGRWND---AARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAK 280
Query: 211 SLFRDLKK------------------------EAN----------ISPSIVTYNTLISVF 236
+F ++ + EAN P +V+YNTLI+ F
Sbjct: 281 EIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGF 340
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
+ V+ F+++ L N TYN LI G+ K +E + M + V PD
Sbjct: 341 CKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDI 400
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYE 320
TY +LL G +G L + I+E
Sbjct: 401 WTYNILLGGLCDNGLLEKALVIFE 424
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/287 (21%), Positives = 112/287 (39%), Gaps = 15/287 (5%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E P IV YN +I + V+ F+EI + PNV TY L+ G + W
Sbjct: 183 EIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWN 242
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAM 337
+ + M + P+ TY LL + +G + ++I+ E+V+ +D P I
Sbjct: 243 DAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSID----PDIVTY 298
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDA 393
+ + DRI + + L+ K P +V+ LI + K +E+ K
Sbjct: 299 SSLINGLCLHDRIDEANQMFDLMVSKGCFP--DVVSYNTLINGFCKAKRVEDGMKLFR-K 355
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
+ V ++ +F+ VDK F + +S G Y+ +
Sbjct: 356 MSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGL 415
Query: 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
+E+ + ++M+ ++D T+ + G KV GL C
Sbjct: 416 LEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTG---KVEDAWGLFC 459
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 2/158 (1%)
Query: 145 RRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYN 203
R+ + G Y I+ ++ +VD A + F++ + + I TYN LLG N
Sbjct: 354 RKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDN 413
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
GL +K +F D++K + + IVTY T+I + V+ F + L P++ T
Sbjct: 414 GLLEKALVIFEDMQK-SEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVT 472
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301
Y +++G T + +VE +Y MK +M + + L
Sbjct: 473 YTTMMSGLCTKGLQHEVEALYTKMKQEGLMKNDSMLCL 510
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ + G DK Q F + +SP I TYN L+ L++ F++
Sbjct: 367 TYNTLIQGFFQVGDVDKAQEFFSQMD-SFGVSPDIWTYNILLGGLCDNGLLEKALVIFED 425
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRGYAH 308
++ S + ++ TY +I G GKVE+ + + + + PD TY ++ G
Sbjct: 426 MQKSEMDLDIVTYTTVIQGMCKT---GKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCT 482
Query: 309 SGNLPRMEKIYELVKHH 325
G +E +Y +K
Sbjct: 483 KGLQHEVEALYTKMKQE 499
>gi|55295905|dbj|BAD67773.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 1013
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 2/175 (1%)
Query: 146 RQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNG 204
R G P + + + I G+ ++ A ++F+ A L TY +L Y G
Sbjct: 741 RMISSGIPRSMQTFNIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKTYTNMLSFYGKAG 800
Query: 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264
+ LF +K E I P +++NT+I+ + L + E FQE++ +N P+ TY
Sbjct: 801 KHHEASLLFSRMK-EDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVPDSHTY 859
Query: 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
LI Y + K EE QMM + P + L+ + G + +++Y
Sbjct: 860 LALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTHFNHLISAFLKEGQIDEAQRMY 914
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+++ T+N ++ Y G +K +F +E + TY ++S +G+ H EA
Sbjct: 749 RSMQTFNIMISVYGQGGKLEKAVEMF-SAAQELGLPIDEKTYTNMLSFYGKA--GKHHEA 805
Query: 248 A--FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ F +K+ + P ++N +I Y T+ + + E I+Q M+ +PD++TYL L+R
Sbjct: 806 SLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVPDSHTYLALIRA 865
Query: 306 YAHSGNLPRMEKIYELV 322
Y + E+ +++
Sbjct: 866 YTEGKCYSKAEEAIQMM 882
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKC 209
G P+ ++ YT + F G+ A+ LF+ ++ ++N ++ AY +GL ++
Sbjct: 781 GLPIDEKTYTNMLSFYGKAGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEA 840
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+ +F++++K ++ P TY LI + E A Q + SN++P+ +N+LI+
Sbjct: 841 EIIFQEMQKNNHV-PDSHTYLALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTHFNHLIS 899
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR-----GYAHSGNL 312
++ + + +Y M+ + D ++R GY G L
Sbjct: 900 AFLKEGQIDEAQRMYNQMEEAGIPADLACCRTMMRMHLDHGYVDDGIL 947
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 6/191 (3%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTY- 193
R A + W + Q Y + YT ++ G++ V LA F E +
Sbjct: 151 RQARDFFAWMKLQLCYEPSVVA--YTILLRLYGQVGKVKLAEVTFLEMLQAGCEPDAVAC 208
Query: 194 NALLGAYM-YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
LL AY + L+D +F + +I PSI +N ++S + L + ++++
Sbjct: 209 GTLLCAYARWGKLNDML--MFYAAVRRRDIVPSISVFNFMVSSLQKQKLHGKVIHLWEQM 266
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
++N++PN FTY +I Y M + + + MK +P+ TY LL+ A G
Sbjct: 267 LEANVAPNQFTYTVVIGSYAKEGMLEEAMDAFGEMKRRRFVPEEATYSLLISLCAKHGKG 326
Query: 313 PRMEKIYELVK 323
+Y+ +K
Sbjct: 327 EEALGLYDEMK 337
>gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Glycine max]
Length = 632
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/310 (18%), Positives = 127/310 (40%), Gaps = 6/310 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ Y G D+ L + E N+ P++ TYN LI ++ + +
Sbjct: 179 TYNTLIKGYGIAGKPDESMKLLDLMSTEGNVKPNLKTYNMLIRALCKMENISEAWNVVYK 238
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ S + P+V T+N + Y + E + M+ + P+ T +++ GY G
Sbjct: 239 MTASGMQPDVVTFNTIATAYAQNGKTAQAEAMILEMQRNSLKPNERTCTIIISGYCREGK 298
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+ + +K ++ +++ + + DR ++ +++L+ E + RP +
Sbjct: 299 VQEALRFVYRMKDLGMQPNLIVLNSLVNGF--VDMMDR-DGVDEVLKLMEEFQIRPDVIT 355
Query: 372 --LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
++ +++ LE+ ++ N+ + + Y R ++K +
Sbjct: 356 YSTIMNAWSQAGFLEKCKEIYNNMLKSGVK-PDAHAYSILAKGYVRAQEMEKAEEMLTVM 414
Query: 430 ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR 489
+G ++ + + + S R++ V +M + + + KTF + + YA Q
Sbjct: 415 TKSGVHPNVVIFTTVISGWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQP 474
Query: 490 RKVNQVLGLM 499
K +L +M
Sbjct: 475 WKAEGMLQIM 484
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 74/387 (19%), Positives = 157/387 (40%), Gaps = 31/387 (8%)
Query: 145 RRQAGYGT---PMTKEEYTKGIKFAGR--INNVDLAADLFAEAA------NKHLKTIGTY 193
R+Q+G + E+ KG F G+ +N + A + ++ + + + +
Sbjct: 16 RKQSGNNNMKKGLFHSEFDKGNHFDGKNHMNEITKATNSGSQPSCTFCMGKNDCQIVRSR 75
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
++ + +G + +F++L E PS+ TY TL++ + + ++
Sbjct: 76 TKVMNILIKSGKPQEAIVIFQNLI-EGGHQPSLATYTTLLNALTTQKYFKPIHSIVSLVE 134
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
+ + P+ +N LI + + +++ Q MK + P TY L++GY +G
Sbjct: 135 EKQMKPDSIFFNALINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPD 194
Query: 314 RMEKIYELVKHHVDGKEFP-------LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
K+ +L+ +G P LIRA+ C + + I + ++ + +
Sbjct: 195 ESMKLLDLMS--TEGNVKPNLKTYNMLIRAL------CKM-ENISEAWNVVYKMTASGMQ 245
Query: 367 PWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
P + + YA+ + E I + + + R I+S Y R V +
Sbjct: 246 PDVVTFNTIATAYAQNGKTAQAEAMILE-MQRNSLKPNERTCTIIISGYCREGKVQEALR 304
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
FV R + G + + +S + + + ++ VLK ME ++I T+ + A++
Sbjct: 305 FVYRMKDLGMQPNLIVLNSLVNGFVDMMDRDGVDEVLKLMEEFQIRPDVITYSTIMNAWS 364
Query: 485 TCGQRRKVNQVLGLMCKNGYDVPVNAF 511
G K ++ M K+G +A+
Sbjct: 365 QAGFLEKCKEIYNNMLKSGVKPDAHAY 391
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y+ L Y+ +K + + + K + + P++V + T+IS + + +D+ F ++
Sbjct: 391 YSILAKGYVRAQEMEKAEEMLTVMTK-SGVHPNVVIFTTVISGWCSVGRMDNAMRVFDKM 449
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ +SPN+ T+ LI GY A K E + Q+M+ V P +T LL+ + +G
Sbjct: 450 GEFGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQPKKSTILLVAEAWRFAGFK 509
Query: 313 PRMEKIYELVK 323
R + + VK
Sbjct: 510 ERAKTLLRTVK 520
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 68/144 (47%), Gaps = 2/144 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ ++ A+ G +KC+ ++ ++ K + + P Y+ L + R ++ E
Sbjct: 355 TYSTIMNAWSQAGFLEKCKEIYNNMLK-SGVKPDAHAYSILAKGYVRAQEMEKAEEMLTV 413
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ S + PNV + +I+G+ + ++ M V P+ T+ L+ GYA +
Sbjct: 414 MTKSGVHPNVVIFTTVISGWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQ 473
Query: 312 LPRMEKIYELVKH-HVDGKEFPLI 334
+ E + ++++ HV K+ ++
Sbjct: 474 PWKAEGMLQIMEEFHVQPKKSTIL 497
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 2/174 (1%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G P T Y I +I+ +D A LF EA + +K + Y++L+ + G D+
Sbjct: 644 GHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEA 703
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+ +L ++ ++P++ T+N L+ + ++ FQ +KD PN TY+ LI
Sbjct: 704 YLIMEELMQKG-LTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILIN 762
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
G + K +Q M+ + P+T TY ++ G A +GN+ ++ K
Sbjct: 763 GLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFK 816
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 113/277 (40%), Gaps = 20/277 (7%)
Query: 96 VDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMT 155
+D+ ++F L++ R+ YA+ ++ GS + E RQ G+ +
Sbjct: 316 LDEAVELFEQLEQN-----RKVPCAYAYNTMIMGYGSAGKFD-EAYGLLERQKAKGSIPS 369
Query: 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRD 215
Y + G+ V+ A +F E + + TYN L+ G + + RD
Sbjct: 370 VIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEI-RD 428
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ A + P+++T N +I + ++ + F+ + D +PN T++ LI G
Sbjct: 429 DMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKC- 487
Query: 276 MWGKVEEIY----QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
G+V++ Y +M+ G V P Y L+R + G KIY+ + H +
Sbjct: 488 --GRVDDAYSLYEKMLDCGHV-PGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDL 544
Query: 332 PLIRA-MICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
LI M C + +K AL R I + P
Sbjct: 545 TLINTYMDCVFK----AGETEKGRALFREINAHGFIP 577
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 95/230 (41%), Gaps = 20/230 (8%)
Query: 184 NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
N HL + L+ + G D SL ++K + + IV YN I FG+ VD
Sbjct: 229 NVHL-----FTTLIRVFAREGRVDAALSLLDEMKSNS-LDADIVLYNVCIDCFGKAGKVD 282
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
F E+K L P+ TY +I A + E+++ ++ +P Y ++
Sbjct: 283 MSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMI 342
Query: 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
GY +G + ++ Y L++ P + A C + + +++E +R+ E
Sbjct: 343 MGYGSAG---KFDEAYGLLERQKAKGSIPSVIAYNCIL---TCLGKKRRVEEALRIFEEM 396
Query: 364 EYRPWLNV----LLIRVYAKEDCLEEMEKSINDAFEHKT---SVTTVRIM 406
+ NV +LI + +E L + I D E +V TV IM
Sbjct: 397 KRDAVPNVPTYNILIDMLCREGKLNAALE-IRDDMERAGLFPNVLTVNIM 445
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 2/152 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I G++ +D A + E K L + T+N LL A + ++ F+ +K
Sbjct: 687 YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMK 746
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ P+ +TY+ LI+ R+ + +QE++ L PN TY +I+G A
Sbjct: 747 -DLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNI 805
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ ++ KA +PD+ +Y ++ G + +
Sbjct: 806 LEASGLFSRFKANGGIPDSASYNAMIEGLSSA 837
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
Query: 167 GRINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G+ VD A L+ + + H+ Y +L+ ++ G + +++++ SP
Sbjct: 485 GKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMV-HTGCSPD 543
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+ NT + + + A F+EI P+ +Y+ LI G + A + + E++
Sbjct: 544 LTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFY 603
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
MK + DT+ Y ++ G+ SG ++ K Y+L++
Sbjct: 604 AMKEQGCVLDTHAYNAVIDGFCKSG---KVNKAYQLLEE 639
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 16/154 (10%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y L+GA D LF ++ E ++ + TLI VF R VD + E
Sbjct: 197 AYTILIGALSEVREPDPMLILFHQMQ-ELGYEVNVHLFTTLIRVFAREGRVDAALSLLDE 255
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+K ++L ++ YN I + A GKV+ + + MK+ +MPD TY ++
Sbjct: 256 MKSNSLDADIVLYNVCIDCFGKA---GKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCK 312
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342
+ L +++E ++ + R + CAY+
Sbjct: 313 ANRLDEAVELFEQLEQN---------RKVPCAYA 337
>gi|357110627|ref|XP_003557118.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g60770-like [Brachypodium distachyon]
Length = 536
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 135/314 (42%), Gaps = 32/314 (10%)
Query: 84 TVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNW 143
T A+R+E+ +D + F+ E G C+ R L +Q RP L L +
Sbjct: 31 TPQAVREEVDGFLDSRKRAFKW--EVGVCVRR----------LRRQELYRPALKLTEVMA 78
Query: 144 RRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF---AEAANKHLKTIGTYNALLGAY 200
RR G T + + + + A F E + HL TY ALL Y
Sbjct: 79 RR-----GMNPTVGDQAIRLDLVAKSRGIAAAEKYFMDLPETSKTHL----TYGALLNCY 129
Query: 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN 260
+++K ++L + KE N + + ++YN+L++++ ++ + + + Q++K ++ P+
Sbjct: 130 CKESMTEKAEALMEKM-KELNFAFTAMSYNSLMTLYTKVNQPEKVPSIIQDMKADDVLPD 188
Query: 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMK-AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
V+TYN + VE + + MK G V+PD TY L Y +G + E
Sbjct: 189 VYTYNVWMRSLAARQDISGVERVIEEMKRDGRVVPDWTTYSNLASIYVEAGLFEKAEAAL 248
Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRLIPEKEYRPWLNVL-----L 373
+ ++ + + +I Y + + + +L R P K +LN++ L
Sbjct: 249 KELEKRNTSNDLEAYQFLITLYGRTQNLVEVHHVWRSLKRNNPRKANMSYLNMIQVLANL 308
Query: 374 IRVYAKEDCLEEME 387
+ A E C +E E
Sbjct: 309 KDLPAAEACFKEWE 322
>gi|255078088|ref|XP_002502624.1| predicted protein [Micromonas sp. RCC299]
gi|226517889|gb|ACO63882.1| predicted protein [Micromonas sp. RCC299]
Length = 1025
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 104/249 (41%), Gaps = 49/249 (19%)
Query: 123 FVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE- 181
F +L+ L R E+ R G MTK + T G G N A DL+
Sbjct: 264 FTDLITALSKR-----ELRRRSRGDLGVDDAMTKTK-TDGTTNDGNGNRTPDAVDLWQTL 317
Query: 182 -AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT-YNTLISVFGRL 239
A++K Y A +GAYM +G D+ +L R++ + + + YN LI+ GR
Sbjct: 318 LASDKLTPDAQAYTAAVGAYMAHGSPDRADALVREMNRRGIAAKAGARLYNVLIAAAGRA 377
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM--------------------------- 272
VD + A + ++D+N+ PN T+ +A Y
Sbjct: 378 GDVDGIRTAERAMRDANVRPNSATHGARVAAYARCGDLSSAERALRSGMGDRPAARPTVH 437
Query: 273 --TAWMW-----GKVEE----IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321
TA + G+V++ I +M G V P+ +TY ++ G G++ R E + E
Sbjct: 438 AYTALVQGLARVGRVDDALGWIRRMSDEGGVSPNAHTYSTIVDGLVRVGDVARAEALVET 497
Query: 322 VKHHVDGKE 330
++ V+G E
Sbjct: 498 MR--VNGVE 504
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ TYN L+ A + NG + A P +VTY TL+ FG V
Sbjct: 583 TVVTYNTLIDACVKNGEPTEAAMGVLSALVAAGHRPDVVTYTTLLKHFGEKGDVAAARWL 642
Query: 249 FQEIK-DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
E++ D SP+ N L+ ++ + M A + PD NTY + G+A
Sbjct: 643 MGEMRSDPGTSPDATAINCLVDALCRRGLFAEAHREVAAMVADGLAPDLNTYGAFMDGFA 702
Query: 308 HSGNLPRMEKIYE 320
G++ +Y+
Sbjct: 703 RVGDVHGARALYD 715
Score = 45.4 bits (106), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 5/146 (3%)
Query: 163 IKFAGRINNVD--LAADLFAEAANKHLKTIGTYNALLGAYMYNG-LSDKCQSLFRDLKKE 219
I AGR +VD A+ AN + T+ A + AY G LS ++L +
Sbjct: 371 IAAAGRAGDVDGIRTAERAMRDANVRPNSA-THGARVAAYARCGDLSSAERALRSGMGDR 429
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD-SNLSPNVFTYNYLIAGYMTAWMWG 278
P++ Y L+ R+ VD + + D +SPN TY+ ++ G +
Sbjct: 430 PAARPTVHAYTALVQGLARVGRVDDALGWIRRMSDEGGVSPNAHTYSTIVDGLVRVGDVA 489
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLR 304
+ E + + M+ V P TY LL+
Sbjct: 490 RAEALVETMRVNGVEPTAVTYNTLLK 515
>gi|115465970|ref|NP_001056584.1| Os06g0111300 [Oryza sativa Japonica Group]
gi|113594624|dbj|BAF18498.1| Os06g0111300 [Oryza sativa Japonica Group]
Length = 978
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 2/175 (1%)
Query: 146 RQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNG 204
R G P + + + I G+ ++ A ++F+ A L TY +L Y G
Sbjct: 706 RMISSGIPRSMQTFNIMISVYGQGGKLEKAVEMFSAAQELGLPIDEKTYTNMLSFYGKAG 765
Query: 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264
+ LF +K E I P +++NT+I+ + L + E FQE++ +N P+ TY
Sbjct: 766 KHHEASLLFSRMK-EDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVPDSHTY 824
Query: 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
LI Y + K EE QMM + P + L+ + G + +++Y
Sbjct: 825 LALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTHFNHLISAFLKEGQIDEAQRMY 879
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+++ T+N ++ Y G +K +F +E + TY ++S +G+ H EA
Sbjct: 714 RSMQTFNIMISVYGQGGKLEKAVEMF-SAAQELGLPIDEKTYTNMLSFYGKA--GKHHEA 770
Query: 248 A--FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ F +K+ + P ++N +I Y T+ + + E I+Q M+ +PD++TYL L+R
Sbjct: 771 SLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEAEIIFQEMQKNNHVPDSHTYLALIRA 830
Query: 306 YAHSGNLPRMEKIYELV 322
Y + E+ +++
Sbjct: 831 YTEGKCYSKAEEAIQMM 847
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKC 209
G P+ ++ YT + F G+ A+ LF+ ++ ++N ++ AY +GL ++
Sbjct: 746 GLPIDEKTYTNMLSFYGKAGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGLHNEA 805
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+ +F++++K ++ P TY LI + E A Q + SN++P+ +N+LI+
Sbjct: 806 EIIFQEMQKNNHV-PDSHTYLALIRAYTEGKCYSKAEEAIQMMLRSNMTPSCTHFNHLIS 864
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR-----GYAHSGNL 312
++ + + +Y M+ + D ++R GY G L
Sbjct: 865 AFLKEGQIDEAQRMYNQMEEAGIPADLACCRTMMRMHLDHGYVDDGIL 912
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 6/191 (3%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTY- 193
R A + W + Q Y + YT ++ G++ V LA F E +
Sbjct: 151 RQARDFFAWMKLQLCYEPSVVA--YTILLRLYGQVGKVKLAEVTFLEMLQAGCEPDAVAC 208
Query: 194 NALLGAYM-YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
LL AY + L+D +F + +I PSI +N ++S + L + ++++
Sbjct: 209 GTLLCAYARWGKLNDML--MFYAAVRRRDIVPSISVFNFMVSSLQKQKLHGKVIHLWEQM 266
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
++N++PN FTY +I Y M + + + MK +P+ TY LL+ A G
Sbjct: 267 LEANVAPNQFTYTVVIGSYAKEGMLEEAMDAFGEMKRRRFVPEEATYSLLISLCAKHGKG 326
Query: 313 PRMEKIYELVK 323
+Y+ +K
Sbjct: 327 EEALGLYDEMK 337
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 82/439 (18%), Positives = 161/439 (36%), Gaps = 44/439 (10%)
Query: 97 DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTK 156
+D ++F +D+ G L A ++ + + R AL+VL+ R + ++
Sbjct: 397 EDAQRMFEEIDKAG--LLSDEQTYVAMAQVHMNVQNYDR-ALQVLDAMRAR---NVKPSQ 450
Query: 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDL 216
Y+ ++ +VD A D F +N + N LL YM G DK ++L +
Sbjct: 451 FSYSALLRCHVAKEDVDAAEDTFRALSNYGPPDVFCCNDLLRLYMRLGHLDKARALILKM 510
Query: 217 KKEA-NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF------------- 262
+KEA + T++ V + + + + I++ S V
Sbjct: 511 RKEALQFDEDLCV--TVLEVCCKTSINKDTDNLTEVIQNEGSSSKVLNPTDSSTLSMMLK 568
Query: 263 ----------TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ + LI + + + +Y+ + PD L+ Y + L
Sbjct: 569 SLLDKPGGLSSVSQLIMKFAREGSTDEAKFLYEHLTELGAKPDDTAIATLIVQYGQAQQL 628
Query: 313 PRMEKIYELVKHHVDGKEFPL----IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ +K++E FP+ AM+ A +C T+ ++ M LI +
Sbjct: 629 EQAQKLFETAS-----TSFPVGGSVYNAMVDALCRCGKTEEAYRL--FMELIDQGHNGDA 681
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+ + ++ + + SI D +++ ++S Y + ++K
Sbjct: 682 VTISILVTHLTKQGKLYSAVSIYDRMISSGIPRSMQTFNIMISVYGQGGKLEKAVEMFSA 741
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
A+ G + Y + + Y + E + M+ I K +F M AYAT G
Sbjct: 742 AQELGLPIDEKTYTNMLSFYGKAGKHHEASLLFSRMKEDGIRPGKISFNTMINAYATSGL 801
Query: 489 RRKVNQVLGLMCKNGYDVP 507
+ + M KN + VP
Sbjct: 802 HNEAEIIFQEMQKNNH-VP 819
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 54/274 (19%), Positives = 115/274 (41%), Gaps = 17/274 (6%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
G+ ++ A LF A+ YNA++ A G +++ LF +L + + +
Sbjct: 623 GQAQQLEQAQKLFETASTSFPVGGSVYNAMVDALCRCGKTEEAYRLFMELIDQGH-NGDA 681
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VT + L++ + + + + + S + ++ T+N +I+ Y GK+E+ +M
Sbjct: 682 VTISILVTHLTKQGKLYSAVSIYDRMISSGIPRSMQTFNIMISVY---GQGGKLEKAVEM 738
Query: 287 MKAGPVMP---DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI--RAMICAY 341
A + D TY +L Y +G ++ +K DG I MI AY
Sbjct: 739 FSAAQELGLPIDEKTYTNMLSFYGKAGKHHEASLLFSRMKE--DGIRPGKISFNTMINAY 796
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLN--VLLIRVYAKEDCLEEMEKSINDAFEHKTS 399
+ + + + E + + + + + P + + LIR Y + C + E++I +
Sbjct: 797 ATSGLHN---EAEIIFQEMQKNNHVPDSHTYLALIRAYTEGKCYSKAEEAIQMMLRSNMT 853
Query: 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
+ ++S++ + +D+ + E AG
Sbjct: 854 PSCTHFNH-LISAFLKEGQIDEAQRMYNQMEEAG 886
>gi|302782654|ref|XP_002973100.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
gi|300158853|gb|EFJ25474.1| hypothetical protein SELMODRAFT_442013 [Selaginella moellendorffii]
Length = 674
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 99/239 (41%), Gaps = 5/239 (2%)
Query: 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAA 176
+ Y F L+ R R E L W R G + Y I GR+ V+ A
Sbjct: 175 QPDNYTFSTLI-NCAKRCRQPEEALKWFERMKSEGIVPDEVTYNSVIDMYGRVGRVNEAV 233
Query: 177 DLFAE--AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234
+L+ + + N L T+ TY A+ Y G L ++++ ++ SP+ V NTL+
Sbjct: 234 ELYEKLKSVNWKLDTV-TYGAIANVYARAGDYQSIIQLVQEMR-DSGSSPNAVIMNTLMG 291
Query: 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294
+ V+ + F E++ S +SP T + L+ Y + + E+Y+ +K
Sbjct: 292 TLSKAGKVNQAKKVFNEMRTSGVSPTPVTLSILVEMYTRVGAYDQAFEVYETLKTEGWKC 351
Query: 295 DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
D Y L++ G + + E I + +K + R + Y+ + D +++
Sbjct: 352 DVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGMVDPARRM 410
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 122/317 (38%), Gaps = 48/317 (15%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN +L + NG + + I P T++TLI+ R + F+
Sbjct: 145 TYNVML-KILRNGRQLELSEKLVEEMTGRGIQPDNYTFSTLINCAKRCRQPEEALKWFER 203
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K + P+ TYN +I Y + E+Y+ +K+ DT TY + YA +G+
Sbjct: 204 MKSEGIVPDEVTYNSVIDMYGRVGRVNEAVELYEKLKSVNWKLDTVTYGAIANVYARAGD 263
Query: 312 LPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ I +LV+ D P ++ ++ SK ++ KK+
Sbjct: 264 Y---QSIIQLVQEMRDSGSSPNAVIMNTLMGTLSKAGKVNQAKKV--------------- 305
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
N+ S T V + +V Y R A D+ +
Sbjct: 306 ---------------------FNEMRTSGVSPTPV-TLSILVEMYTRVGAYDQAFEVYET 343
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG- 487
++ GW+ ++Y+S M RVE+ E +LKEM+ + T+ YAT G
Sbjct: 344 LKTEGWKCDVAVYNSLMKACVEGGRVEQAEDILKEMKRAGCNPDHLTYRTAMNTYATKGM 403
Query: 488 ---QRRKVNQVLGLMCK 501
RR ++V+ L K
Sbjct: 404 VDPARRMFDKVVALNGK 420
>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
gi|224029903|gb|ACN34027.1| unknown [Zea mays]
gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
Length = 819
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 122/289 (42%), Gaps = 46/289 (15%)
Query: 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAA 176
H+ +L+KQ G RP + YT + GR + A
Sbjct: 381 HTEALETFKLLKQNGLRPDIV--------------------SYTSLLNAYGRSAQPEKAR 420
Query: 177 DLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
++F E K +YNAL+ AY G+ + SL +++++ I P +++ +TL++
Sbjct: 421 EVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDG-IQPDVISISTLLTA 479
Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
GR + ++ K + N YN I Y++ + K +Y M+AG V PD
Sbjct: 480 CGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPD 539
Query: 296 TNTYLLLLRGYAHSG----NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351
TY +L+ G G +L E + +L H KE + ++IC+Y K + K
Sbjct: 540 AVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLT--KE--VYSSVICSYVK-----QGK 590
Query: 352 KIEALMRLIPEKEYRPWLNVL----LIRVYAKE-------DCLEEMEKS 389
EA KE + +VL LI+ Y+ + D +EME +
Sbjct: 591 LTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENN 639
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I +YNALLGAY +G+ + F+ LK+ + P IV+Y +L++ +GR + F
Sbjct: 365 IVSYNALLGAYASHGMHTEALETFKLLKQNG-LRPDIVSYTSLLNAYGRSAQPEKAREVF 423
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
E++ + PN +YN LI Y +A M + + M+ + PD + LL
Sbjct: 424 NEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRC 483
Query: 310 GNLPRMEKIYELVK 323
L +++ I K
Sbjct: 484 KQLTKIDIILAAAK 497
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/428 (21%), Positives = 173/428 (40%), Gaps = 29/428 (6%)
Query: 98 DLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMT 155
D D V VL+ RR+ F L++++ L A+ V W + Q Y
Sbjct: 100 DADAVDAVLNCWAGRFARRN-----FPLLIREIAISGSLKHAVHVFRWMKNQENYCA--R 152
Query: 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFR 214
+ Y I+ R N VD A LF E K TYN+L+ A+ G ++
Sbjct: 153 NDIYGMMIRLHARHNKVDQARGLFFEMQEWRCKPNTDTYNSLIHAHARAGQWCWAINIMD 212
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
D+++ A I PS TYN +I+ G +++ ++ + P++ T+N +++ +
Sbjct: 213 DMQRAA-IPPSRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNG 271
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH-----HVDGK 329
+ K +++MK+ V PDT T +++ G +++ ++ H D
Sbjct: 272 AQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVV 331
Query: 330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEE 385
+ +++ +YS C + K A+ ++ + RP N++ L+ YA E
Sbjct: 332 TYT---SIMYSYSVCGQAENCK---AVFDIMVAEGVRP--NIVSYNALLGAYASHGMHTE 383
Query: 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445
++ ++ V ++++Y R +K + + Y++ +
Sbjct: 384 ALETFKLLKQNGLRPDIVSYTS-LLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALI 442
Query: 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
Y S ++E S+L EME I + + A C Q K++ +L G
Sbjct: 443 DAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGIQ 502
Query: 506 VPVNAFPS 513
+ A+ S
Sbjct: 503 LNTVAYNS 510
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 87/181 (48%), Gaps = 6/181 (3%)
Query: 180 AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
A++ L T+ YN+ +G+Y+ G K L+ ++ N+ P VTYN LIS G
Sbjct: 496 AKSRGIQLNTVA-YNSGIGSYLSLGDYKKALVLYTSMRA-GNVKPDAVTYNILIS--GSC 551
Query: 240 LLVDHMEAA--FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN 297
L ++E+ F+++ D N+ Y+ +I Y+ + + MK PD
Sbjct: 552 KLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAASTFNSMKETGCFPDVL 611
Query: 298 TYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357
TY L++ Y+ G+ R +++ ++++ + + +++ A +K +R+ ++ M
Sbjct: 612 TYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDAIVCSSLMEALNKGGQPERVLQLIEFM 671
Query: 358 R 358
+
Sbjct: 672 K 672
>gi|240255936|ref|NP_193372.6| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|374095491|sp|Q8GWE0.3|PP314_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g16390, chloroplastic; AltName: Full=Chloroplastic
RNA-binding protein P67; Flags: Precursor
gi|332658341|gb|AEE83741.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 702
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 80/368 (21%), Positives = 155/368 (42%), Gaps = 21/368 (5%)
Query: 42 PNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDAR--VRKDLTQTVSALRDELLANV--- 96
PN + D+ +F + +T P+ V +L +T+ R+ +L NV
Sbjct: 124 PNEADVCDVITGFGGKLFEQDAVVTLNNMTNPETAPLVLNNLLETMKPSREVILYNVTMK 183
Query: 97 -----DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYG 151
DL+K ++ DE + + + + + P+ A+E W + + +G
Sbjct: 184 VFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVE---WFEKMSSFG 240
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQ 210
I GR NVD+A L+ A + + T++ L+ Y +G D C
Sbjct: 241 CEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCL 300
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+++ ++K + P++V YN LI GR + ++++ + +PN TY L+
Sbjct: 301 NIYEEMKA-LGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRA 359
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH-HVDGK 329
Y A IY+ MK + Y LL A + + +I++ +K+
Sbjct: 360 YGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDP 419
Query: 330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEME 387
+ ++I Y+ CS R+ + EA + + E + P L VL +I+ Y K ++++
Sbjct: 420 DSWTFSSLITVYA-CS--GRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQVDDVV 476
Query: 388 KSINDAFE 395
++ + E
Sbjct: 477 RTFDQVLE 484
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 1/138 (0%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y ++ GR D A ++ E K L T+ YN LL N D+ +F+D+K
Sbjct: 353 YAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMK 412
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P T+++LI+V+ V EAA +++++ P +F +I Y A
Sbjct: 413 NCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGKAKQV 472
Query: 278 GKVEEIYQMMKAGPVMPD 295
V + + + PD
Sbjct: 473 DDVVRTFDQVLELGITPD 490
>gi|357116934|ref|XP_003560231.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g73710-like [Brachypodium distachyon]
Length = 922
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 83/170 (48%), Gaps = 1/170 (0%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+ I YN ++ AY D+ SL ++K E+ ISP TYN+LI +F
Sbjct: 479 RDIVEYNVMVKAYGLAKRYDRVTSLLENMK-ESGISPDECTYNSLIQMFSAGGFPQRANK 537
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
+++K++ L P+ TY+ +I Y +++ + ++Y MKA V P+ Y LL+ +A
Sbjct: 538 LLRKMKETGLKPSCETYSAIIRTYSHSFLASEAIDLYNEMKASDVEPNVVVYGLLIDMFA 597
Query: 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357
+G + + L++ ++ ++I AYSK + + + A M
Sbjct: 598 ETGQVEKALHYSNLMEESGITPNHIVLTSLIKAYSKVNCWKEAQGLYARM 647
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 63/321 (19%), Positives = 130/321 (40%), Gaps = 16/321 (4%)
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
+ +D A E + K + TYN L+ Y G +F D+ + P I T+
Sbjct: 252 DKLDSAGPSGVEEVPRKPKLVVTYNTLIALYGKAGRLKDAMEMFVDMLVY-QVVPDIYTF 310
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
NT+I+VFG ++ EA + ++P++ TYN ++ + + V + Y +
Sbjct: 311 NTMINVFGLHGRMEVAEALLANMVIRGVTPDIKTYNVMMTVFASMGDVEGVLKYYHQIGR 370
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH---VDGKEFPLIRAMICAYSKCSV 346
+ D +Y ++L+ + E + E + V G+ P++ M Y
Sbjct: 371 TGLCADVVSYRVVLQVLCERKMVREAEDVIEEIMQSGTCVLGQFLPVVMKM---YIDQGF 427
Query: 347 TDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIM 406
D+ R E + +I +A E CL E + + F + V R +
Sbjct: 428 LDKAHVF--FERHFRALEVSSKIVAAIIDAFA-ERCLWEEAEHV---FHYARGVGGKRDI 481
Query: 407 ---RCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463
+V +Y D++ + ++ + +G Y+S + M+++ + +L++
Sbjct: 482 VEYNVMVKAYGLAKRYDRVTSLLENMKESGISPDECTYNSLIQMFSAGGFPQRANKLLRK 541
Query: 464 MENYKIDCSKKTFWIMYYAYA 484
M+ + S +T+ + Y+
Sbjct: 542 MKETGLKPSCETYSAIIRTYS 562
>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
Length = 1107
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 125/308 (40%), Gaps = 19/308 (6%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ TYN ++ G + + LF ++K + P VTYN++I FG++ +D
Sbjct: 129 TVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG-LVPDTVTYNSMIDGFGKVGRLDDTVCF 187
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE---EIYQMMKAGPVMPDTNTYLLLLRG 305
F+E+KD P+V TYN LI + +GK+ E Y+ MK + P+ +Y L+
Sbjct: 188 FEEMKDMCCEPDVITYNALINCFCK---FGKLPIGLEFYREMKGNGLKPNVVSYSTLVDA 244
Query: 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE--K 363
+ G + + +K +VD + L+ S +I + RL E +
Sbjct: 245 FCKEGMMQ------QAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQ 298
Query: 364 EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIM---RCIVSSYFRCNAVD 420
W NV+ C E K + F + + + ++ + + +D
Sbjct: 299 VGVEW-NVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMD 357
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480
+ + + G + LY + + S ++E + V+ EM+ I + + +
Sbjct: 358 RALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLM 417
Query: 481 YAYATCGQ 488
AY G
Sbjct: 418 DAYFKSGN 425
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
N LL + G +D + F+D+ A P++ TYN +I + V+ F+E+K
Sbjct: 99 NGLLHRFAKLGKTDDVKRFFKDMIG-AGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMK 157
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
L P+ TYN +I G+ ++ MK PD TY L+ + G LP
Sbjct: 158 FRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLP 217
Query: 314 RMEKIYELVK 323
+ Y +K
Sbjct: 218 IGLEFYREMK 227
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 1/147 (0%)
Query: 177 DLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
D+ N + G ++AL + G+ ++ F +K+ + P + N L+ F
Sbjct: 47 DVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKR-FRVFPKTRSCNGLLHRF 105
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
+L D ++ F+++ + P VFTYN +I +++ MK ++PDT
Sbjct: 106 AKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDT 165
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVK 323
TY ++ G+ G L +E +K
Sbjct: 166 VTYNSMIDGFGKVGRLDDTVCFFEEMK 192
>gi|168052832|ref|XP_001778843.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669712|gb|EDQ56293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 953
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 1/137 (0%)
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
+ P++VTYN+LIS ++ ++ + F E+K+ + N YN LI G+ + +
Sbjct: 527 GVQPTVVTYNSLISACVKIGDLERACSLFPEMKELGVEANTHCYNPLIQGFAMQGRFDRA 586
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340
+ + M A V PD NTY LL+ + S + + ++++ ++ + + MI
Sbjct: 587 LAVMRSMDAAGVKPDVNTYRLLIFACSLSKDQDKADQLFAEMQEREIRPDESIYTVMIIV 646
Query: 341 YSKCSVTDR-IKKIEAL 356
YSKC DR I+ I +L
Sbjct: 647 YSKCGNVDRGIEMIRSL 663
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 110/256 (42%), Gaps = 15/256 (5%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ TYN+L+ A + G ++ SLF ++K E + + YN LI F D A
Sbjct: 531 TVVTYNSLISACVKIGDLERACSLFPEMK-ELGVEANTHCYNPLIQGFAMQGRFDRALAV 589
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ + + + P+V TY LI + K ++++ M+ + PD + Y +++ Y+
Sbjct: 590 MRSMDAAGVKPDVNTYRLLIFACSLSKDQDKADQLFAEMQEREIRPDESIYTVMIIVYSK 649
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM------RLIPE 362
GN+ R E+++ E I A +VT R+++ AL RL+P
Sbjct: 650 CGNVDRG---IEMIRSLEKSGETAGIEAKSAILHGLAVTGRLEEALALYAVFKRERLLPH 706
Query: 363 KEYRPWLNVLLIRVYAKEDCLEEMEKSINDA---FEHKTSVTTVRIMRCI--VSSYFRCN 417
L L +V + E E + D F + +RCI V + R N
Sbjct: 707 SYAVGTLLAALGKVGDLDKMFELFEDARGDGKWPFMNLRQRAEHLNIRCINSVLACIRHN 766
Query: 418 AVDKLANFVKRAESAG 433
+ + +F+++ + G
Sbjct: 767 QLGRAISFLRKVKEEG 782
>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
Length = 528
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 9/212 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I G+ N + A D F + ++ + T+N L+ A+ G D+ LF +++
Sbjct: 267 YNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMR 326
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E+N TYN +I++ G + +EA E+K+ L PN+ TY L+ Y + +
Sbjct: 327 -ESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRF 385
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP--LIR 335
+ + + MKA + P + Y L+ YA G + + ++ DG E ++
Sbjct: 386 KEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMR--ADGLEASTVVLN 443
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
++I A+ + RI + ++++ + E RP
Sbjct: 444 SLINAFGE---DRRIAEAFSVLQFMKENGLRP 472
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 2/145 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLK 217
YT + GR A D LK T Y+AL+ AY GL+D ++ + ++
Sbjct: 372 YTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMR 431
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + S V N+LI+ FG + + Q +K++ L P+V TY L+ + +
Sbjct: 432 AD-GLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQF 490
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLL 302
KV IY+ M PD +L
Sbjct: 491 EKVPVIYEEMITSGCAPDRKARAML 515
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/319 (18%), Positives = 132/319 (41%), Gaps = 17/319 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YNALL Y+ G + + ++ + ++P TY+ L+ + R + +E
Sbjct: 161 AYNALLKGYVKIGSLKNAEQVLDEMS-QCGVAPDEATYSLLVDAYTRAGRWESARILLKE 219
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + P+ + ++ ++AG+ W K + + M A V PD + Y +++ +
Sbjct: 220 MEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNC 279
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR----LIPEKEYRP 367
L ++ ++ + +I A+ K DR ++ MR + Y
Sbjct: 280 LGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNI 339
Query: 368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
+N+L +E E +E + + E V + +V Y R + + ++
Sbjct: 340 MINLL-----GEEQRWEGVEAMLAEMKEQGL-VPNIITYTTLVDVYGRSGRFKEAVDCIE 393
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
++ G + ++YH+ + YA + + +V+K M ++ S + A+ G
Sbjct: 394 AMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAF---G 450
Query: 488 QRRKVNQ---VLGLMCKNG 503
+ R++ + VL M +NG
Sbjct: 451 EDRRIAEAFSVLQFMKENG 469
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 71/191 (37%), Gaps = 5/191 (2%)
Query: 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KT 189
G R A+E+ + R P+ Y I G + + AE + L
Sbjct: 312 GGRHDRAIELFDEMRES---NCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPN 368
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TY L+ Y +G + +K + + PS Y+ L++ + + L DH
Sbjct: 369 IITYTTLVDVYGRSGRFKEAVDCIEAMKAD-GLKPSSTMYHALVNAYAQRGLADHALNVV 427
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ ++ L + N LI + + + Q MK + PD TY L++
Sbjct: 428 KAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRV 487
Query: 310 GNLPRMEKIYE 320
++ IYE
Sbjct: 488 EQFEKVPVIYE 498
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 54/311 (17%), Positives = 116/311 (37%), Gaps = 44/311 (14%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+ ++LF + I P YN L+ + ++ + + E E+ ++P+ TY+ L
Sbjct: 141 EAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLL 200
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y A W + + M+A V P + + +L G+ G
Sbjct: 201 VDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQ-------------- 246
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME 387
K F ++R M + + P++ + NV +I + K +CL
Sbjct: 247 -KAFAVLREMHASGVR-----------------PDRHF---YNV-MIDTFGKYNCLGHAM 284
Query: 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVM 447
+ + E V ++ ++ + D+ + L + Y+ + +
Sbjct: 285 DAFDRMREEGIEPDVV-TWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINL 343
Query: 448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG---- 503
++R E +E++L EM+ + + T+ + Y G+ ++ + M +G
Sbjct: 344 LGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPS 403
Query: 504 ---YDVPVNAF 511
Y VNA+
Sbjct: 404 STMYHALVNAY 414
>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
Length = 740
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 118/274 (43%), Gaps = 9/274 (3%)
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS 211
+P T Y I R++ DL + L +L+ ++ +G DK
Sbjct: 10 SPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIYGFVKDGEVDKAHC 69
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
LF ++ E + P I+ N++I ++ +D E+ Q++ DS ++P++FTY+ +I G
Sbjct: 70 LFLEMM-EQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGL 128
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
+ K E + + M P++ TY L+ GY+ SG +++ K
Sbjct: 129 CKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVF---KQMSSCGVI 185
Query: 332 PLI---RAMICAYSKCSVTDRIKKI-EALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME 387
P + + I A K T+ K I ++++ P+ + + +L A + CL ++
Sbjct: 186 PTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVH 245
Query: 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
N K + ++++Y RC +DK
Sbjct: 246 NIFNLMLT-KGIAPNKHVFNILINAYARCGMMDK 278
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 76/184 (41%), Gaps = 8/184 (4%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL---LLVD 243
+ T+ N+ + A +G +++ + +F + + P I++Y+T++ + L D
Sbjct: 185 IPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGP-KPDIISYSTMLHGYATATDSCLAD 243
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
+ F + ++PN +N LI Y M K I++ M+ ++PDT T+ ++
Sbjct: 244 -VHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 302
Query: 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
G R++ H VD P C C + K + L+ + K
Sbjct: 303 SSLCRIG---RLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNK 359
Query: 364 EYRP 367
+ P
Sbjct: 360 DIPP 363
>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
Length = 762
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 99/234 (42%), Gaps = 28/234 (11%)
Query: 91 ELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGY 150
E+LA D+D+V + G C + + + M Q G P +
Sbjct: 424 EMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNV-------------- 469
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
+T + G+ G +V A +L E +NK L+ TYN+L+ G D+
Sbjct: 470 ---VTYTALSDGLCKQG---DVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQA 523
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
D+ A + P + TY TLI + +D QE+ D+ + P + TYN L+
Sbjct: 524 MRTMADMDA-AGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMN 582
Query: 270 GYMTAWMWGKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
G+ M G+VE ++ + M + P+ TY L++ Y N+ +IY+
Sbjct: 583 GF---CMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYK 633
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I + +D A DL E + +K TI TYN L+ + +G + + L +
Sbjct: 542 YTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLL-EWM 600
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTA 274
E NI P+ TYN+L+ + + ++M++ ++ + N+ PN TYN LI G+ A
Sbjct: 601 LEKNIHPNATTYNSLMKQY---CIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKA 657
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304
+ + + M ++Y L+R
Sbjct: 658 RSMKEAQYFHNEMIEKGFRLTASSYSALIR 687
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 16/143 (11%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ ISPS N ++S RL L + +E FQ + D N V +YN L+ A
Sbjct: 227 RQYGISPSPEACNAVLS---RLPLDEAIEL-FQGLPDKN----VCSYNILLKVLCGA--- 275
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKE--FPLI 334
G+VE+ Q+ PD TY +L+ GY G L K+ ++V V+ + +
Sbjct: 276 GRVEDARQLFDEMASPPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSV 335
Query: 335 RAMICAYSKCSVTDRIKKIEALM 357
A++C K V+D + +E ++
Sbjct: 336 VALLC--DKGRVSDALTVVEDMV 356
Score = 38.9 bits (89), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 4/130 (3%)
Query: 186 HLKTI---GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
H K I Y +L + G + F +++++ ++ VTY TLI+ R +
Sbjct: 357 HHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKG-LATDGVTYTTLINGLCRAGEL 415
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
E QE+ L + TY L+ GY + +++ M V P+ TY L
Sbjct: 416 KEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTAL 475
Query: 303 LRGYAHSGNL 312
G G++
Sbjct: 476 SDGLCKQGDV 485
>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 839
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 140/350 (40%), Gaps = 28/350 (8%)
Query: 122 AFVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF 179
+ L+ QL R AL + W T KG G I D
Sbjct: 379 TYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQM 438
Query: 180 AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
+A + TYN ++ Y G + L ++ K + TY LIS F R
Sbjct: 439 LKAGPS--PNVITYNIIIHIYFKQGYMNNAMRLL-EMMKGNGLKLDTWTYANLISGFSRG 495
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE----IYQMMKAGPVMPD 295
++H + F E+ + +SPNV TYN +I GY+T KV++ ++M+++G V P
Sbjct: 496 GKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTV---AKVDDALALFWKMVESGNV-PS 551
Query: 296 TNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE 354
+ TY +++ G++ + + E ++VK + P + R
Sbjct: 552 SGTYNMMISGFSKTNRISEAENFCGKMVKQGL----LPNVITYTSFIDGLCKNGRTSLAF 607
Query: 355 ALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS 412
+ + +++Y P L LI +E E+ E+ ++D E T + +
Sbjct: 608 KIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDDGCEPNVDTYTTLVRG--LCG 665
Query: 413 YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
RC D+L +K+ G + +Y + +V Q + E+ES LK
Sbjct: 666 KGRCYEADQLVESMKK---KGLQPSEEIYRALLV---GQCKNLEVESALK 709
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 3/172 (1%)
Query: 157 EEYTKGIKFAGRINNVDLAADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRD 215
+ YT I R ++A ++ + A+ + T TY+AL+ G + ++F
Sbjct: 343 QTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEW 402
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ ++ P+ TYN +I F + + A F ++ + SPNV TYN +I Y
Sbjct: 403 MLSHDSL-PNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQG 461
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHV 326
+ +MMK + DT TY L+ G++ G L ++ E+V+H +
Sbjct: 462 YMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGI 513
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 120/321 (37%), Gaps = 48/321 (14%)
Query: 24 SSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQ 83
SS+P PLS+ + T FP LV +S L+ P +L+
Sbjct: 29 SSQPHPSSPLSISSNTDP-----------------FPELVSKISIILSSPTWERSSELSH 71
Query: 84 TVSALRDELLANV----DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALE 139
+ L+ + N+ ++ + V R F +H FV ++ +L R RL +
Sbjct: 72 LIPKLKPHHVVNLLDTHNNTESVLRFFHWVSRTHFFKHDMS-CFVSMLNRL-VRDRLFVP 129
Query: 140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV-DLAADLFAEAANKHLKTIGTYNALLG 198
N R + + E + I+ IN D L++ T LG
Sbjct: 130 ADNVRILMIK--SCRNEGEVKRVIQVLSEINTTYDFGYTLYS---------FSTLLIQLG 178
Query: 199 AYMYNGLSDKCQSLFRDLKKE---ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
+ +GL RD+ E + I P++ T+N +I + V E I
Sbjct: 179 KFDMDGLG-------RDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHY 231
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
P+ FTY LI G+ E++ M P++ TY L+ G G R+
Sbjct: 232 GACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEG---RL 288
Query: 316 EKIYELVKHHVDGKEFPLIRA 336
E+ ++++ +D P + A
Sbjct: 289 EEAMDMLEEMIDKGIEPTVHA 309
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 83/204 (40%), Gaps = 8/204 (3%)
Query: 141 LNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGA 199
L W+ ++G P + Y I + N + A + + + L + TY + +
Sbjct: 539 LFWKMVESG-NVP-SSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDG 596
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
NG + +F ++KK + P++ TY++LI L E A + + D P
Sbjct: 597 LCKNGRTSLAFKIFHEMKKR-DYFPNLCTYSSLID---GLCQEGQAEDA-ERLLDDGCEP 651
Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
NV TY L+ G + +++ + MK + P Y LL G + + KI+
Sbjct: 652 NVDTYTTLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIF 711
Query: 320 ELVKHHVDGKEFPLIRAMICAYSK 343
+ + +A+ICA K
Sbjct: 712 DSMVTTGFQPCLSDYKALICALCK 735
Score = 38.1 bits (87), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 64/313 (20%), Positives = 115/313 (36%), Gaps = 12/313 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY +L+ + NG D +F + K+ P+ VTY+ LI+ ++ +E
Sbjct: 239 TYTSLIIGHCKNGNLDLAFEMFDRMVKDG-CDPNSVTYSALINGLCSEGRLEEAMDMLEE 297
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ D + P V Y I A + ++ MK P+ TY L+ G + G
Sbjct: 298 MIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGK 357
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+Y K DG P ++ V R + + + + P N
Sbjct: 358 FEVAIGVYH--KMLADGL-VPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLP--NT 412
Query: 372 LLIRVYAKEDC-LEEMEK--SINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
V K C + ++K +I D V I+ YF+ ++ ++
Sbjct: 413 ETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEM 472
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+ G +L Y + + ++ ++E S+ EM + I + T+ + Y T
Sbjct: 473 MKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVA- 531
Query: 489 RRKVNQVLGLMCK 501
KV+ L L K
Sbjct: 532 --KVDDALALFWK 542
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ A G + S+ RD++ A P++VTYNTL++ F R VD E
Sbjct: 192 TYNILVRALCGRGHRKEALSILRDMRG-AGCGPNVVTYNTLVAAFFRAGEVDGAERLVGM 250
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+++ L PN+ T+N ++ G A +++ M + PD +Y L+ GY +G
Sbjct: 251 MREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAG 309
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ A+ G D + L + +E + P++VT+N++++ + ++ F E
Sbjct: 227 TYNTLVAAFFRAGEVDGAERLV-GMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDE 285
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ L+P+ +YN L+ GY A + ++ M +MPD T+ L+ +GN
Sbjct: 286 MVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGN 345
Query: 312 LPR 314
L R
Sbjct: 346 LER 348
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 129/312 (41%), Gaps = 32/312 (10%)
Query: 186 HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI-SVFGRLLLVDH 244
++ ++ YNA+L A L+ + F D ++P++ TYN L+ ++ GR H
Sbjct: 152 YVPSVLAYNAVLLALSDASLTSARR--FFDSMLSDGVAPNVYTYNILVRALCGR----GH 205
Query: 245 MEAAFQEIKD---SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301
+ A ++D + PNV TYN L+A + A E + MM+ G + P+ T+
Sbjct: 206 RKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNS 265
Query: 302 LLRGYAHSGNLPRMEKIY-ELVKHHV--DGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
++ G +G + K++ E+V+ + DG + ++ Y K + + A M
Sbjct: 266 MVNGMCKAGKMEDARKVFDEMVREGLAPDGVSY---NTLVGGYCKAGCSHEALSVFAEMT 322
Query: 359 LIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC 416
+K P + LI V K LE + E + V ++ + +
Sbjct: 323 ---QKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEV-TFTALIDGFCKK 378
Query: 417 NAVDKLANFVKRAESAGWRLCR-----SLYHSKMVMYASQRRVEEMESVLKEMENYKIDC 471
+D V+ G + CR Y++ + Y R++E +L EME +
Sbjct: 379 GFLDDALLAVR-----GMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKP 433
Query: 472 SKKTFWIMYYAY 483
T+ + AY
Sbjct: 434 DVVTYSTIISAY 445
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 128/312 (41%), Gaps = 48/312 (15%)
Query: 169 INNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+ +D A +L E K LK + TY+ ++ AY N + L + + E + P +
Sbjct: 413 VGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQML-EKGVLPDAI 471
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY--- 284
TY++LI V + F+ + L P+ FTY LI G+ G VE
Sbjct: 472 TYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGH---CKEGNVESALSLH 528
Query: 285 -QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+M+KAG V+PD TY +L+ G + S +++ + H E P+
Sbjct: 529 DKMVKAG-VLPDVVTYSVLINGLSKSARAMEAQQLLFKLYH-----EDPIPAN------- 575
Query: 344 CSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV 403
K +ALM + E + L L++ + + + E +K + ++
Sbjct: 576 -------TKYDALMHCCRKAELKSVLA--LLKGFCMKGLMNEADKVYQSMLDRNWNLDG- 625
Query: 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGW--------RLCRSLYHSKMVMYASQRRVE 455
+ ++ + R V K +F K+ G+ L R L+ + MV+ A Q
Sbjct: 626 SVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQ---- 681
Query: 456 EMESVLKEMENY 467
V++++ NY
Sbjct: 682 ----VIQQLLNY 689
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 84/220 (38%), Gaps = 57/220 (25%)
Query: 123 FVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEA 182
V +M++ G +P L +T G+ AG++ + A +F E
Sbjct: 247 LVGMMREGGLKPNL-----------------VTFNSMVNGMCKAGKMED---ARKVFDEM 286
Query: 183 ANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV------ 235
+ L G +YN L+G Y G S + S+F ++ ++ I P +VT+ +LI V
Sbjct: 287 VREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKG-IMPDVVTFTSLIHVMCKAGN 345
Query: 236 -----------------------------FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
F + +D A + +K + P+V YN
Sbjct: 346 LERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNA 405
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
LI GY + E+ M+A + PD TY ++ Y
Sbjct: 406 LINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAY 445
>gi|410110147|gb|AFV61153.1| pentatricopeptide repeat-containing protein 123, partial [Phyla
nodiflora]
Length = 419
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 118 ALSVFSEMREXKCLXDLXTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 176
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN +I Y K + Q M++ +
Sbjct: 177 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIE 236
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 237 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 296
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 82/179 (45%), Gaps = 19/179 (10%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 182 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG-IEPN 238
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + + +I Y A + + +
Sbjct: 239 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLH 298
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+K +P DT ++L A +G + ++ + K+ + MI SK
Sbjct: 299 ELKRPDNIPRDTAIHIL-----AGAGRIEEATYVFRQAIDSGEVKDITVFERMIHLLSK 352
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 52/284 (18%), Positives = 108/284 (38%), Gaps = 3/284 (1%)
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
GL D S + ++ + + +V + LI + +L + F +K S P++
Sbjct: 8 GLFDXALSWLQKMEXDX-VPGDLVLXSNLIELSRKLCDYSKAISIFSRLKXSGXXPDLXA 66
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
YN +I + A ++ + + MK VMP T +Y LL Y + ++ ++
Sbjct: 67 YNAMINVFGKAKLFREARSLIXEMKTAGVMPXTTSYSTLLTMYVENXKFLEALSVFSEMR 126
Query: 324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL 383
+ MI Y + + K+ MR + + N LL RVY +
Sbjct: 127 EXKCLXDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL-RVYGDAELF 185
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
E + + K V ++ Y + +K N ++ +S G Y +
Sbjct: 186 GE-AIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYST 244
Query: 444 KMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+ ++ +++ + +++ + ++ + F M AY G
Sbjct: 245 IISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAG 288
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 49/262 (18%), Positives = 106/262 (40%), Gaps = 11/262 (4%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK + P + YN +I+VFG+ L + E+K + + P +Y+ L
Sbjct: 47 KAISIFSRLKX-SGXXPDLXAYNAMINVFGKAKLFREARSLIXEMKTAGVMPXTTSYSTL 105
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + ++ M+ + D T +++ Y G +K++ ++
Sbjct: 106 LTMYVENXKFLEALSVFSEMREXKCLXDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 165
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCL 383
++ Y + + L RL+ K NV+ +I +Y K
Sbjct: 166 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMIMIYGKTLEH 220
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
E+ I + ++ I+S + + +D+ A ++ S+G + + L+ +
Sbjct: 221 EKANNLIQEMQSRGIEPNSI-TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 279
Query: 444 KMVMYASQRRVEEMESVLKEME 465
+V Y V + +L E++
Sbjct: 280 MIVAYERAGLVAHAKRLLHELK 301
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 76/151 (50%), Gaps = 2/151 (1%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A D F+E + + + TY+++L + G ++ SLF+ + E N+ P+ VT+ LI
Sbjct: 99 AMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMV-ERNVIPNKVTFTILI 157
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ ++ F+ + + L P+V+TYN L+ GY + + ++++ +M
Sbjct: 158 DGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCA 217
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
P+ +Y +L+ G+ SG + + + + H
Sbjct: 218 PNVRSYNILINGHCKSGRIDEAKGLLAEMSH 248
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 101/246 (41%), Gaps = 44/246 (17%)
Query: 94 ANVDDLDKVFRVLDEKG--------SCLFRRHSNGYAFVELMKQLG--SRPRLALEVLNW 143
+ +D+ K+F ++D KG + L H E L S L ++ +
Sbjct: 199 SQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTY 258
Query: 144 RRRQAGY---GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAY 200
G+ G P +E K + G + N+ TY+ +L
Sbjct: 259 STLMRGFCQVGRPQEAQELLKEMCSYGLLPNLI------------------TYSIVLDGL 300
Query: 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS---VFGRLLLVDHMEAA---FQEIKD 254
+G D+ L + ++ E+ I P+I Y LI FG+L EAA F +
Sbjct: 301 CKHGHLDEAFELLKAMQ-ESKIEPNIFIYTILIEGMCTFGKL------EAARELFSNLFV 353
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ P V TY +I+G + + + E+++ M +P++ TY ++++G+ +G+ P
Sbjct: 354 KGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPN 413
Query: 315 MEKIYE 320
++ E
Sbjct: 414 AVRLIE 419
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/317 (19%), Positives = 123/317 (38%), Gaps = 8/317 (2%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A LF E H + TY+ ++ G + L + ++ E P++V YNT+I
Sbjct: 29 AVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKME-EKGCKPNVVAYNTII 87
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ LV F E+ + P+VFTY+ ++ G+ + +++ M V+
Sbjct: 88 DSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVI 147
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P+ T+ +L+ G + ++E + + A++ Y S D +K
Sbjct: 148 PNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQK- 206
Query: 354 EALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVS 411
L ++ K P + +LI + K ++E K + HK+ + ++
Sbjct: 207 --LFNIMDRKGCAPNVRSYNILINGHCKSGRIDE-AKGLLAEMSHKSLTPDIFTYSTLMR 263
Query: 412 SYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC 471
+ + + +K S G Y + ++E +LK M+ KI+
Sbjct: 264 GFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEP 323
Query: 472 SKKTFWIMYYAYATCGQ 488
+ + I+ T G+
Sbjct: 324 NIFIYTILIEGMCTFGK 340
>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g02150
gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 72/331 (21%), Positives = 134/331 (40%), Gaps = 19/331 (5%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ TYN ++ G + + LF ++K + P VTYN++I FG++ +D
Sbjct: 261 TVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG-LVPDTVTYNSMIDGFGKVGRLDDTVCF 319
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE---EIYQMMKAGPVMPDTNTYLLLLRG 305
F+E+KD P+V TYN LI + +GK+ E Y+ MK + P+ +Y L+
Sbjct: 320 FEEMKDMCCEPDVITYNALINCFCK---FGKLPIGLEFYREMKGNGLKPNVVSYSTLVDA 376
Query: 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE--K 363
+ G + + +K +VD + L+ S +I + RL E +
Sbjct: 377 FCKEGMMQ------QAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQ 430
Query: 364 EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIM---RCIVSSYFRCNAVD 420
W NV+ C E K + F + + + ++ + + +D
Sbjct: 431 VGVEW-NVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMD 489
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480
+ + + G + LY + + S ++E + V+ EM+ I + + +
Sbjct: 490 RALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLM 549
Query: 481 YAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
AY G + +L M + +V V F
Sbjct: 550 DAYFKSGNPTEGLHLLDEMKELDIEVTVVTF 580
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
N LL + G +D + F+D+ A P++ TYN +I + V+ F+E+K
Sbjct: 231 NGLLHRFAKLGKTDDVKRFFKDMIG-AGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMK 289
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
L P+ TYN +I G+ ++ MK PD TY L+ + G LP
Sbjct: 290 FRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLP 349
Query: 314 RMEKIYELVKHH 325
+ Y +K +
Sbjct: 350 IGLEFYREMKGN 361
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 91/232 (39%), Gaps = 15/232 (6%)
Query: 126 LMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR-------------INNV 172
++ +L P+LA + W + G+ + I F R ++
Sbjct: 114 VLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKA 173
Query: 173 DLAA-DLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
D D+ N + G ++AL + G+ ++ F +K+ + P + N
Sbjct: 174 DCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKR-FRVFPKTRSCNG 232
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L+ F +L D ++ F+++ + P VFTYN +I +++ MK
Sbjct: 233 LLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG 292
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
++PDT TY ++ G+ G L +E +K + A+I + K
Sbjct: 293 LVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCK 344
>gi|145517919|ref|XP_001444837.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412270|emb|CAK77440.1| unnamed protein product [Paramecium tetraurelia]
Length = 981
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 79/311 (25%), Positives = 130/311 (41%), Gaps = 20/311 (6%)
Query: 159 YTKGIKFAGRINNVDL--AADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDL 216
YT I +N+DL A LF E + YN LL A + G ++ L ++
Sbjct: 359 YTTLINGLKNSDNMDLKLAFSLFEEYKQYNQPDQIIYNCLLDACINAGDLNRGFQLLNEM 418
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA-- 274
K+ I +TYNTLI GR ++ F+E+K + PN ++N L+ +
Sbjct: 419 KQSQTIQLDEITYNTLIKGCGRKKRLNDALNLFEEMKLIGIKPNRISFNSLLDSCVKCNK 478
Query: 275 --WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA--HSGNLPRMEKIYELVKHHVDGKE 330
W EE M K + PD TY +L+ G HS + I L + G+
Sbjct: 479 MNIAWRYFEE---MRKQYGIFPDNFTYSILVNGIKTNHSNRDELLRAITLLEQIQETGQF 535
Query: 331 FP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEE 385
P L ++I A C + I+K L R + K+ P +LI+ Y K++ L
Sbjct: 536 KPDEILYNSLIDA---CVKFNEIQKGMELFREMKNKQIEPSSVTYGILIKAYGKQNDLNG 592
Query: 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKM 445
K + + K + V C+V + R + +D+ F+ + +S + LY + +
Sbjct: 593 AFKIFEEMKQKKIPINDV-TYGCLVDACVRNDRLDQALQFIDQMKSQNLPINTVLYTTII 651
Query: 446 VMYASQRRVEE 456
+ + EE
Sbjct: 652 KGFCKLNQTEE 662
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 3/162 (1%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
IK G+ N+++ A +F E K + TY L+ A + N D+ F D K N
Sbjct: 581 IKAYGKQNDLNGAFKIFEEMKQKKIPINDVTYGCLVDACVRNDRLDQALQ-FIDQMKSQN 639
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS-PNVFTYNYLIAGYMTAWMWGKV 280
+ + V Y T+I F +L + F +K S + PN+ TYN L+ G + + +
Sbjct: 640 LPINTVLYTTIIKGFCKLNQTEEAIKYFDLMKQSPKTYPNLITYNSLLDGMVKNGLLNQA 699
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
++++Q + + PD T+ LL+G+ GN+ R+ + +++
Sbjct: 700 DKLFQELVDSKIKPDLITFSTLLKGHCRKGNMKRLNETVQIM 741
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 101/228 (44%), Gaps = 18/228 (7%)
Query: 90 DELLAN--VDDLDKVFRVLDEKGSCLFRRHSN------GYAFVELMKQLGSRPRL--ALE 139
DE+L N +D K + +KG LFR N + L+K G + L A +
Sbjct: 538 DEILYNSLIDACVKFNEI--QKGMELFREMKNKQIEPSSVTYGILIKAYGKQNDLNGAFK 595
Query: 140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT--YNALL 197
+ +++ P+ Y + R + +D A + +++L I T Y ++
Sbjct: 596 IFEEMKQKK---IPINDVTYGCLVDACVRNDRLDQALQFIDQMKSQNL-PINTVLYTTII 651
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
+ +++ F +K+ P+++TYN+L+ + L++ + FQE+ DS +
Sbjct: 652 KGFCKLNQTEEAIKYFDLMKQSPKTYPNLITYNSLLDGMVKNGLLNQADKLFQELVDSKI 711
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
P++ T++ L+ G+ ++ E Q+M + PD + L+L
Sbjct: 712 KPDLITFSTLLKGHCRKGNMKRLNETVQIMTGLQISPDESLLQLILEA 759
>gi|255660932|gb|ACU25635.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
venustus]
Length = 484
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 3/170 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K I+P ++TYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNIMIWGFFLSGKVETANRFFEDMKNR-EITPDVITYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + + TY LL G ++
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKANAITYSTLLPGLCNAEK 270
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL 359
+ I E+V ++ + + +I K D + +A++RL
Sbjct: 271 MSEARSILKEMVDKYIAPTDNSIFMRLISGQCKAGNLDAAADVLKAMIRL 320
>gi|428671933|gb|EKX72848.1| pentatricopeptide repeat domain containing protein [Babesia equi]
Length = 1104
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 5/172 (2%)
Query: 158 EYTKGIKFAGRINN--VDLAADLFAEAANKHLKTIGT--YNALLGAYMYNGLSDKCQSLF 213
E T G F +NN VD A LF + ++ T Y L+ Y N DK +F
Sbjct: 768 EVTYGCMFDAYVNNNRVDDAVRLFEDMKSQGKVKPNTIMYTTLIKGYGQNKQLDKALKMF 827
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+ E N++ + VTYN++I R+ ++ + +++ ++N+ P++ T++ +I GY
Sbjct: 828 NMMCSE-NVAANTVTYNSIIDACARVGDMNGAASLLEDMLNNNIEPDLITFSTIIKGYCV 886
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
K ++ +M +MPD Y LL G SG L EK+++ ++ +
Sbjct: 887 QSNMDKSFQLLSIMYERGIMPDVILYNSLLEGCVKSGLLWLCEKLWQQMQQY 938
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT IK G+ +D A +F ++++ TYN+++ A G + SL D+
Sbjct: 807 YTTLIKGYGQNKQLDKALKMFNMMCSENVAANTVTYNSIIDACARVGDMNGAASLLEDML 866
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK---DSNLSPNVFTYNYLIAGYMTA 274
NI P ++T++T+I + + +M+ +FQ + + + P+V YN L+ G + +
Sbjct: 867 NN-NIEPDLITFSTIIKGY---CVQSNMDKSFQLLSIMYERGIMPDVILYNSLLEGCVKS 922
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321
+ E+++Q M+ + P T +L++ Y +G L +K++EL
Sbjct: 923 GLLWLCEKLWQQMQQYGIPPSNFTLTILIKMYGRNGQL---DKVFEL 966
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM-EAAFQE 251
YN+LL + +GL C+ L++ +++ I PS T LI ++GR +D + E A
Sbjct: 912 YNSLLEGCVKSGLLWLCEKLWQQMQQYG-IPPSNFTLTILIKMYGRNGQLDKVFELADTL 970
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
K + N Y L++ +T + + E+Y+ MK+ + D T+ L++G + G
Sbjct: 971 PKQYGFTINTHVYTCLMSACITNGRYSMILEVYKCMKSAGIKADAKTFETLIQGASKGG 1029
Score = 45.8 bits (107), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ + G+ D+C L+ + + P+ VTY + + VD F++
Sbjct: 734 TYGVIIKSLSCCGMIDECNRLWDEFVNKRGFEPNEVTYGCMFDAYVNNNRVDDAVRLFED 793
Query: 252 IKDSN-LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+K + PN Y LI GY K +++ MM + V +T TY ++ A G
Sbjct: 794 MKSQGKVKPNTIMYTTLIKGYGQNKQLDKALKMFNMMCSENVAANTVTYNSIIDACARVG 853
Query: 311 NLPRMEKIYE 320
++ + E
Sbjct: 854 DMNGAASLLE 863
>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
Length = 481
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 118/268 (44%), Gaps = 16/268 (5%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAG--RINNVDLAADLFAEAANKH--L 187
R + ALEV+ R + G + ++YT +G +I ++ AA +F E +
Sbjct: 161 GRVQAALEVMREMRERGG----IAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVA 216
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+ YNAL+G Y G D D+ + ++ ++ TYN L+ A
Sbjct: 217 PSAVMYNALIGGYCDRGKLDVALQYREDMVQR-GVAMTVATYNLLVHALFMDGRASDAYA 275
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
+E++ + LSP+VFTYN LI GY K E+++ M V TY L+ ++
Sbjct: 276 VLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFS 335
Query: 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
G + ++++++ + + A+I S C+ D + E + + EK+ P
Sbjct: 336 RKGQVQETDRLFKVAVKKGIRPDVVMYNALI--NSHCAGGDMERAFEIMAEM--EKKRIP 391
Query: 368 WLNV---LLIRVYAKEDCLEEMEKSIND 392
+V LIR + L+E I++
Sbjct: 392 PDDVTYNTLIRGFCLLGRLDEARGLIDE 419
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 31/209 (14%)
Query: 116 RHSNGYAFVELMKQLGSRPRL------------------ALEVLNWRRRQAGYGTPMTKE 157
R S+ YA +E M++ G P + ALEV R+ T +T
Sbjct: 269 RASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVT-- 326
Query: 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDL 216
YT I R V LF A K ++ + YNAL+ ++ G ++ + ++
Sbjct: 327 -YTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEM 385
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
+K+ I P VTYNTLI F L +D E+ + P++ G
Sbjct: 386 EKK-RIPPDDVTYNTLIRGFCLLGRLDEARGLIDEMTKRGIQPDL--------GLCKNGQ 436
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
E + + M + PD +TY+ L+ G
Sbjct: 437 GDDAENLMKEMVGKGITPDDSTYISLIEG 465
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 132/336 (39%), Gaps = 42/336 (12%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N +L G + L R + + P+ VTYNT+I+ F V +E
Sbjct: 118 TFNIMLRHLCATGKPVRALELLRQMPR-----PNAVTYNTVIAGFCARGRVQAALEVMRE 172
Query: 252 IKD-SNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPDTNTYLLLLRGYAHS 309
+++ ++P+ +TY LI+G+ +++ +M+ G V P Y L+ GY
Sbjct: 173 MRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLTQGEVAPSAVMYNALIGGYCDR 232
Query: 310 GNLP-----RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR--LIPE 362
G L R + + V V L+ A+ + +D +E + R L P+
Sbjct: 233 GKLDVALQYREDMVQRGVAMTVATYNL-LVHAL---FMDGRASDAYAVLEEMQRNGLSPD 288
Query: 363 KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH---KTSVTTVRIMRCIVSSYFRCNAV 419
+ +LI Y C E EK + FE K T ++ ++ R V
Sbjct: 289 V----FTYNILINGY----CKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQV 340
Query: 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
+ K A G R +Y++ + + + +E ++ EME +I T+ +
Sbjct: 341 QETDRLFKVAVKKGIRPDVVMYNALINSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTL 400
Query: 480 YYAYATCGQ------------RRKVNQVLGLMCKNG 503
+ G+ +R + LGL CKNG
Sbjct: 401 IRGFCLLGRLDEARGLIDEMTKRGIQPDLGL-CKNG 435
>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 120/283 (42%), Gaps = 35/283 (12%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C + + Y +E MK G P T Y I +I
Sbjct: 596 GFCKCGKVNKAYQLLEEMKTKGFEP--------------------TVVTYGSVIDGLAKI 635
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ +D A LF EA +K ++ + Y++L+ + G D+ + +L ++ ++P++ T
Sbjct: 636 DRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKG-LTPNVYT 694
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
+N+L+ + ++ FQ +K+ +PN TY LI G + K +Q M+
Sbjct: 695 WNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQ 754
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+ P T +Y ++ G A +GN+ +++ K + + AMI S +
Sbjct: 755 KQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGN--- 811
Query: 349 RIKKIEALMRLIPEKEYRPWLN------VLLIRVYAKEDCLEE 385
+ ++A + E+ R L+ V+L+ K DCLE+
Sbjct: 812 --RAMDAFS--LFEETRRRGLHIHNKTCVVLLDTLHKNDCLEQ 850
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 111/256 (43%), Gaps = 16/256 (6%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I +N+ D+ LF + + T+ + L+ + G D SL ++K
Sbjct: 171 YTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMK 230
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+++ IV YN I FG++ VD F EI+ + L P+ TY +I A
Sbjct: 231 S-SSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRL 289
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+ E+++ ++ +P T Y ++ GY +G + ++ Y L++ P + A
Sbjct: 290 DEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAG---KFDEAYSLLERQRAKGSIPSVIAY 346
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPE--KEYRPWLNVLLIRV-----YAKEDCLEEMEKSI 390
C + ++ K++ +R+ E K+ P L+ I + K DC E+ S+
Sbjct: 347 NCIL---TCLRKMGKVDEALRVFEEMKKDAAPNLSTYNILIDMLCRAGKLDCAFELRDSM 403
Query: 391 NDAFEHKTSVTTVRIM 406
A +V TV IM
Sbjct: 404 QKAGLF-PNVRTVNIM 418
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 15/212 (7%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G++ VD A ++ + + +T Y +L+ + +G + +++D+ + N SP
Sbjct: 458 GKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQ-NCSPD 516
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+ NT + + + A F+EIK P+ +Y+ LI G + A + E++
Sbjct: 517 LQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFY 576
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
MK + DT Y +++ G+ G ++ K Y+L++ + K F + Y S
Sbjct: 577 SMKEQGCVLDTRAYNIVIDGFCKCG---KVNKAYQLLE-EMKTKGF---EPTVVTYG--S 627
Query: 346 VTDRIKKI----EALMRLIPEKEYRPWLNVLL 373
V D + KI EA M K R LNV++
Sbjct: 628 VIDGLAKIDRLDEAYMLFEEAKSKRIELNVVI 659
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/360 (19%), Positives = 142/360 (39%), Gaps = 12/360 (3%)
Query: 115 RRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDL 174
RR YA+ ++ GS + E + RQ G+ + Y + ++ VD
Sbjct: 303 RRVPCTYAYNTMIMGYGSAGKFD-EAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDE 361
Query: 175 AADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234
A +F E + TYN L+ G D C RD ++A + P++ T N ++
Sbjct: 362 ALRVFEEMKKDAAPNLSTYNILIDMLCRAGKLD-CAFELRDSMQKAGLFPNVRTVNIMVD 420
Query: 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294
+ +D A F+++ +P+ T+ LI G +IY+ M
Sbjct: 421 RLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRT 480
Query: 295 DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA-MICAYSKCSVTDRIKKI 353
++ Y L++ + + G KIY+ + + + L+ M C +
Sbjct: 481 NSIVYTSLIKNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMF 540
Query: 354 EALM--RLIPE-KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV 410
E + R +P+ + Y ++ L+ +A E + + + + V R ++
Sbjct: 541 EEIKSRRFVPDARSYSILIHGLIKAGFANE------TYELFYSMKEQGCVLDTRAYNIVI 594
Query: 411 SSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID 470
+ +C V+K ++ ++ G+ Y S + A R++E + +E ++ +I+
Sbjct: 595 DGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIE 654
>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
lyrata]
gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
lyrata]
Length = 1010
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 3/157 (1%)
Query: 164 KFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI 222
KFA ++ D F + K T+ TYN ++ G + + LF ++K I
Sbjct: 69 KFA-KLGKTDGVKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLI 127
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
P VTYN++I FG++ +D F+E+KD P+V TYN LI + K E
Sbjct: 128 -PDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLE 186
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
++ MK + P+ +Y L+ + G + + K Y
Sbjct: 187 FFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFY 223
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 113/270 (41%), Gaps = 39/270 (14%)
Query: 47 TRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVL 106
TR++C P VF L +L D + ++ Q S + K FRV
Sbjct: 17 TRNVCVPG-FGVFDALFSVLI------DLGMVEEAIQCFSKM------------KRFRVF 57
Query: 107 DEKGSCLFRRHSNG--YAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIK 164
+ SC NG + F +L K G V + + G G T Y I
Sbjct: 58 PKTRSC------NGLLHKFAKLGKTDG--------VKRFFKDMIGAGAKPTVFTYNIMID 103
Query: 165 FAGRINNVDLAADLFAEAANKHL--KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI 222
+ +V+ A LF E + L T+ TYN+++ + G D F ++K +
Sbjct: 104 CMCKEGDVEAARGLFEEMKFRGLIPDTV-TYNSMIDGFGKVGRLDDTVCFFEEMK-DMCC 161
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
P ++TYN LI+ F + + F+E+K + L PNV +Y+ L+ + M + +
Sbjct: 162 EPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIK 221
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
Y M+ ++P+ TY L+ Y GNL
Sbjct: 222 FYVDMRRVGLVPNEYTYTSLIDAYCKIGNL 251
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
N LL + G +D + F+D+ A P++ TYN +I + V+ F+E+K
Sbjct: 64 NGLLHKFAKLGKTDGVKRFFKDMIG-AGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMK 122
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
L P+ TYN +I G+ ++ MK PD TY L+ + G LP
Sbjct: 123 FRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLP 182
Query: 314 RMEKIYELVK 323
+ + + +K
Sbjct: 183 KGLEFFREMK 192
>gi|359496226|ref|XP_003635182.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial-like [Vitis vinifera]
Length = 382
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 73/138 (52%), Gaps = 1/138 (0%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221
I G+ D A +F E ++ +++ ++NALLGA + + DK + F +L + +
Sbjct: 101 ITLYGKSGMFDHAFKVFDEMPDQKCERSVLSFNALLGACVNSKKFDKVEGFFSELPSKLS 160
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
+ P +V+YN +I+ + +D E++ +L P++ T+N L+ G T+ + E
Sbjct: 161 VEPDLVSYNIVINGLCDMGSMDSAVGMLDEMEKKSLEPDLITFNTLLNGCYTSGRFLDGE 220
Query: 282 EIYQMMKAGPVMPDTNTY 299
+I+ M+ ++PD +Y
Sbjct: 221 KIWGRMEKKNILPDIRSY 238
>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g02150-like [Cucumis
sativus]
Length = 822
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 129/305 (42%), Gaps = 21/305 (6%)
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
N LL +G + F D+ A I+PS+ TYN +I + +++ F +++
Sbjct: 199 NFLLHRLSKSGNGQLVRKFFNDMIG-AGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMR 257
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
+ LSP+V TYN LI GY +V ++ MK +PD TY L+ Y +P
Sbjct: 258 EMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMP 317
Query: 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR---LIPEKEYRPWLN 370
R + + +K++ +I A+ K + K+ MR L+P + +
Sbjct: 318 RAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNE----FTY 373
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTS---VTTVRIMRCIVSSYFRCNAVDKLANFVK 427
LI K L E K +ND + VT ++ + + A + + +K
Sbjct: 374 TSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLK 433
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA--YAT 485
S ++ +L H Y R+E+ +LK+M +C+ K I+Y + +
Sbjct: 434 DGISPNQQVYTALVHG----YIKAERMEDAMKILKQMT----ECNIKPDLILYGSIIWGH 485
Query: 486 CGQRR 490
C QR+
Sbjct: 486 CSQRK 490
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 132/306 (43%), Gaps = 15/306 (4%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ TYN ++ G + + LF ++ E +SP +VTYN+LI +G++ ++ + +
Sbjct: 229 SVFTYNVMIDYLCKEGDLENSRRLFVQMR-EMGLSPDVVTYNSLIDGYGKVGSLEEVASL 287
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F E+KD P++ TYN LI Y + E + MK + P+ TY L+ +
Sbjct: 288 FNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCK 347
Query: 309 SGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL---IPEKE 364
G + K+ ++ + + EF + ++T+ K + +++ +
Sbjct: 348 EGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVT 407
Query: 365 YRPWLNVLLI--RVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
Y L+ L R+ E+ M K D V T +V Y + ++
Sbjct: 408 YTALLDGLCKAGRMIEAEEVFRSMLK---DGISPNQQVYTA-----LVHGYIKAERMEDA 459
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482
+K+ + LY S + + SQR++EE + +L+EM++ I + + A
Sbjct: 460 MKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDA 519
Query: 483 YATCGQ 488
Y G+
Sbjct: 520 YFKAGK 525
Score = 45.1 bits (105), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 12/195 (6%)
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
++ AY G S + F++++ + + +IVTY LI +V+ F +
Sbjct: 516 IIDAYFKAGKSSDALNFFQEMQ-DVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSL 574
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
L PNV Y LI G ++++ M+ + PD + L+ G GNL
Sbjct: 575 GLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQ-- 632
Query: 316 EKIYELVKHHVDGKEFPL--IRAMICAYSKCSVTDRIKKIEALM---RLIPEKEYRPWLN 370
E + + + EF L +++ +S+C + +K M ++PE+ L
Sbjct: 633 EALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEV----LC 688
Query: 371 VLLIRVYAKEDCLEE 385
+ L+R Y K L+E
Sbjct: 689 ICLLREYYKRGQLDE 703
>gi|449444614|ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like [Cucumis sativus]
gi|449528063|ref|XP_004171026.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like [Cucumis sativus]
Length = 536
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 82/180 (45%), Gaps = 5/180 (2%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A+D F + L T+ + NA L + + D + +R++++ + I P+ T N +I
Sbjct: 187 ASDTFCRMKDYGFLPTVESCNAYLSSLLNFSRGDIALAFYREMRR-SRIYPNSYTLNLVI 245
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+L +D F+E+ SPNV +YN LIAGY + ++ +M+ V
Sbjct: 246 CACCKLGRLDKANVVFEEMGTMGFSPNVASYNTLIAGYCNKGLLSSAMKLRSVMEKNGVP 305
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK---CSVTDRI 350
PD T+ L+ G+ G L K++ +K +I YSK C + +R+
Sbjct: 306 PDVVTFNTLVNGFCKVGKLQEASKLFGEMKGMSLSPTTVTYNILINGYSKAGNCEMGNRL 365
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 2/144 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
++ +D A +F E + +YN L+ Y GL L R + ++ + P +
Sbjct: 250 KLGRLDKANVVFEEMGTMGFSPNVASYNTLIAGYCNKGLLSSAMKL-RSVMEKNGVPPDV 308
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VT+NTL++ F ++ + F E+K +LSP TYN LI GY A +++
Sbjct: 309 VTFNTLVNGFCKVGKLQEASKLFGEMKGMSLSPTTVTYNILINGYSKAGNCEMGNRLFEE 368
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSG 310
M V D TY L+ G G
Sbjct: 369 MSRFQVKADILTYNALILGLCKEG 392
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 84/188 (44%), Gaps = 4/188 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T N ++ A G DK +F ++ SP++ +YNTLI+ + L+
Sbjct: 240 TLNLVICACCKLGRLDKANVVFEEMGT-MGFSPNVASYNTLIAGYCNKGLLSSAMKLRSV 298
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + + P+V T+N L+ G+ + +++ MK + P T TY +L+ GY+ +GN
Sbjct: 299 MEKNGVPPDVVTFNTLVNGFCKVGKLQEASKLFGEMKGMSLSPTTVTYNILINGYSKAGN 358
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+++E + + A+I K + KK L+R + EK P +
Sbjct: 359 CEMGNRLFEEMSRFQVKADILTYNALILGLCK---EGKTKKAAYLVRELDEKGLVPNAST 415
Query: 372 LLIRVYAK 379
+Y +
Sbjct: 416 FSALIYGQ 423
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 106/267 (39%), Gaps = 11/267 (4%)
Query: 99 LDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEE 158
LDK V +E G+ F N ++ L+ ++ L+ + R G P
Sbjct: 254 LDKANVVFEEMGTMGFS--PNVASYNTLIAGYCNKGLLS-SAMKLRSVMEKNGVPPDVVT 310
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
+ + ++ + A+ LF E L T TYN L+ Y G + LF ++
Sbjct: 311 FNTLVNGFCKVGKLQEASKLFGEMKGMSLSPTTVTYNILINGYSKAGNCEMGNRLFEEMS 370
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + I+TYN LI + +E+ + L PN T++ LI G
Sbjct: 371 R-FQVKADILTYNALILGLCKEGKTKKAAYLVRELDEKGLVPNASTFSALIYGQCVQKQS 429
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+ +IY+ M P T+ +LL + + + + +L++ ++ + P + +
Sbjct: 430 ERAFQIYKSMIKSSFTPCDQTFRMLLSTFCENED---YDGAVQLLEEMLNRHKAPDVNNL 486
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKE 364
Y C+ + K++ M L E E
Sbjct: 487 ---YELCAGLGQCGKVKTAMMLCSELE 510
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ A+ G D+ + L D+ +E + P++VT+N++++ + ++ F E
Sbjct: 194 TYNTLVAAFCRAGEVDRAERLV-DMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDE 252
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ L+P+ +YN L+ GY + ++ M +MPD T+ L+ +GN
Sbjct: 253 MVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGN 312
Query: 312 LPR 314
L R
Sbjct: 313 LER 315
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ A G + S+ RD++ A P+ VTYNTL++ F R VD E
Sbjct: 159 TYNILVRALCGRGHRKEALSVLRDMRG-AGCDPNAVTYNTLVAAFCRAGEVDRAERLVDM 217
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+++ L PN+ T+N ++ G A +++ M + PD +Y L+ GY G
Sbjct: 218 MREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVG 276
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 90/225 (40%), Gaps = 57/225 (25%)
Query: 123 FVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEA 182
V++M++ G +P L +T GI AGR+ + A +F E
Sbjct: 214 LVDMMREGGLKPNL-----------------VTFNSVVNGICKAGRMED---ARKVFDEM 253
Query: 183 ANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV------ 235
+ L G +YN L+G Y G S + S+F ++ ++ I P +VT+ +LI V
Sbjct: 254 VKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKG-IMPDVVTFTSLIHVMCKAGN 312
Query: 236 -----------------------------FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
F + +D A +E++ + P+V YN
Sbjct: 313 LERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNA 372
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
LI GY + E+ + M+A V PD TY +L Y +G+
Sbjct: 373 LINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGD 417
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/300 (21%), Positives = 121/300 (40%), Gaps = 20/300 (6%)
Query: 213 FRDLKKEANISPSIVTYNTLI-SVFGRLLLVDHMEAAFQEIKD---SNLSPNVFTYNYLI 268
F D ++P++ TYN L+ ++ GR H + A ++D + PN TYN L+
Sbjct: 144 FFDSMLSDGVAPNVYTYNILVRALCGR----GHRKEALSVLRDMRGAGCDPNAVTYNTLV 199
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHV- 326
A + A + E + MM+ G + P+ T+ ++ G +G + K++ E+VK +
Sbjct: 200 AAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLA 259
Query: 327 -DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCL 383
DG + ++ Y K + + A M K P + LI V K L
Sbjct: 260 PDGVSY---NTLVGGYCKVGCSHEALSVFAEM---TRKGIMPDVVTFTSLIHVMCKAGNL 313
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
E + + E + + ++ + + +D V+ + Y++
Sbjct: 314 ERAVGLVREMRERGLQMNEI-TFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNA 372
Query: 444 KMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ Y R++E +++EME + T+ + AY G Q+ M +NG
Sbjct: 373 LINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENG 432
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 122/296 (41%), Gaps = 40/296 (13%)
Query: 169 INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+ +D A +L E K +K + TY+ +L AY NG + L + + E + P +
Sbjct: 380 VGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQML-ENGVLPDAI 438
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY--- 284
TY++LI V + F+ + L P+ TY LI G+ G VE
Sbjct: 439 TYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGH---CKEGNVERALSLH 495
Query: 285 -QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+M+KAG V+PD TY +L+ G + S +++ + H E P + A I
Sbjct: 496 DEMVKAG-VLPDVVTYSVLINGLSKSARTKEAQRLLFKLYH-----EEP-VPANI----- 543
Query: 344 CSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV 403
K +ALMR E + L L++ + + + E +K + ++
Sbjct: 544 --------KYDALMRCCRNAELKSVLA--LLKGFCMKGLMNEADKVYQSILDRNWNLDG- 592
Query: 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGW--------RLCRSLYHSKMVMYASQ 451
+ ++ + R V K +F K+ G+ L R L+ MV+ A Q
Sbjct: 593 SVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQ 648
>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 560
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 86/188 (45%), Gaps = 10/188 (5%)
Query: 136 LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYN 194
LAL+ +W + Q GY + YT I GR N + + L E + + + TYN
Sbjct: 49 LALKFFDWAKEQEGYKHDVCT--YTTMIGIMGRARNFEACSRLLQEMRREGCEPCVVTYN 106
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
L+ AY + +F +++E SP VTY TL+ + + D+ +Q+++
Sbjct: 107 RLIHAYGRANFLGEAMRIFYQMQEEG-CSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQ 165
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ P+ FTY+ +I A GKV E +++ M P TY +++ A SGN
Sbjct: 166 AGFQPDTFTYSVIIHCLGKA---GKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGN 222
Query: 312 LPRMEKIY 319
K+Y
Sbjct: 223 YVMAMKLY 230
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 99/239 (41%), Gaps = 20/239 (8%)
Query: 144 RRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMY 202
+ +QAG+ P T Y+ I G+ V A LF E + ++ TYN ++
Sbjct: 162 KMQQAGF-QPDTFT-YSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAK 219
Query: 203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF 262
+G L+ D++ +A P VTY+ ++ V G++ + E F E++ + P+
Sbjct: 220 SGNYVMAMKLYNDMQ-DAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAP 278
Query: 263 TYNYLIAGYMTAWMWGKVE------EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
Y ++ MWGK E YQ M + P+ LL Y + + +
Sbjct: 279 IYGVMVD------MWGKARNAERALEWYQKMLDSGLTPNVQISNSLLGSYL---RMQQFD 329
Query: 317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIR 375
+ +++ P ++ S C+ + + ++ LM E Y ++ LL+R
Sbjct: 330 LAFGVIETMKAWGLVPTLQTHTILLSSCTASAQHHQVVNLMHRSSETVY-SFVCTLLLR 387
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 104/268 (38%), Gaps = 17/268 (6%)
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
N +L +GL+ K F K++ + TY T+I + GR + QE++
Sbjct: 38 NEVLKHQKESGLALK---FFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMR 94
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
P V TYN LI Y A G+ I+ M+ PD TY L+ ++ +G
Sbjct: 95 REGCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHD 154
Query: 314 RMEKIYELVKH-HVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV- 371
+Y+ ++ F + C V++ +K E ++ E+ + P L
Sbjct: 155 NAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMV----ERGFAPSLVTY 210
Query: 372 -LLIRVYAKED---CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
++I + AK ++ + DA H V T IM ++ + + N
Sbjct: 211 NIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRV-TYSIMMEVLGQIGHLQEAELMFN--- 266
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVE 455
E AGW +Y + M+ R E
Sbjct: 267 EMEQAGWVPDAPIYGVMVDMWGKARNAE 294
>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
Length = 425
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A L+ E + + +I TY++L+ + + D+ + +F + + P +VTYNTLI
Sbjct: 140 AEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF-EFMVSKHCFPDVVTYNTLI 198
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
F + V+ F+E+ L N TYN LI G A +EI++ M + V
Sbjct: 199 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVP 258
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
P+ TY LL G +G L + ++E ++
Sbjct: 259 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 288
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 8/193 (4%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIG 191
R +EV ++ G +T +G+ AG + D+A ++F E + + I
Sbjct: 206 RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG---DCDMAQEIFKEMVSDGVPPNIM 262
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN LL NG +K +F L++ + + P+I TYN +I + V+ F
Sbjct: 263 TYNTLLDGLCKNGKLEKAMVVFEYLQR-SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCN 321
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + P+V YN +I+G+ + + +++ MK +P++ Y L+R G+
Sbjct: 322 LSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGD 381
Query: 312 LPRMEKIYELVKH 324
E EL+K
Sbjct: 382 ---REASAELIKE 391
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 119/300 (39%), Gaps = 9/300 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ G +D +L ++ + + P ++ YNT+I + +D F+E
Sbjct: 18 TYGVVVNGLCKRGDTDLAFNLLNKME-QGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKE 76
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + PNV TY+ LI+ W + M + PD T+ L+ + G
Sbjct: 77 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 136
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
L EK+Y E+VK +D P I + + DR+ + + + + K P +
Sbjct: 137 LVEAEKLYDEMVKRSID----PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVV 192
Query: 371 V--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
LI+ + K +EE + + + TV ++ F+ D K
Sbjct: 193 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV-TYNILIQGLFQAGDCDMAQEIFKE 251
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
S G Y++ + ++E+ V + ++ K++ + T+ IM G+
Sbjct: 252 MVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 311
>gi|297811615|ref|XP_002873691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319528|gb|EFH49950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 938
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 5/197 (2%)
Query: 129 QLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE-AANKHL 187
+ S+ + A + YG ++++ Y I ++ AA + + A +
Sbjct: 651 DMSSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTRKAAMVMEDMEARGFV 710
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
T+NAL+ Y K S + + EA ISP++ TYNT+I L+ +E
Sbjct: 711 PDTVTFNALMHGYFVGSHVGKALSTY-SMMMEAGISPNVATYNTIIRGLSDAGLIKEVEK 769
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
E+K + P+ FTYN LI+G + IY M A ++P T+TY +L+ +A
Sbjct: 770 WLSEMKSRGMRPDDFTYNALISGQAKIGNKKESMTIYCEMIADGLVPKTSTYNVLISEFA 829
Query: 308 HSGNLPRMEKIYELVKH 324
G +M + EL+K
Sbjct: 830 KVG---KMLQATELMKE 843
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 11/132 (8%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N+L+ + NGL SL +SP + N LI L V + A +
Sbjct: 96 WNSLIHQFNVNGLVHDQVSLVYSKMIACGVSPDVFALNVLIH---SLCKVGQLSFAISLL 152
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ----MMKAGPVMPDTNTYLLLLRGYAH 308
++ +S + TYN +I+G G +E YQ M+K G ++PDT ++ L+ G+
Sbjct: 153 RNRVISVDTVTYNTVISGLCEH---GLADEAYQFLSEMVKIG-ILPDTVSFNTLIDGFCK 208
Query: 309 SGNLPRMEKIYE 320
GN R + + +
Sbjct: 209 VGNFARAKALVD 220
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
G M GL L R+++ E + P+ VTY TL+ + H A + ++ +
Sbjct: 273 GKVMEGGL------LLREME-EMGVYPNHVTYTTLVDSLFKAKDYRHALALYSQMVVRGI 325
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
++ Y L+AG A + E+ ++M+ +P+ TY L+ G +G+L E
Sbjct: 326 PVDLVVYTVLMAGLFKAGDLREAEKTFKMLLEDNEVPNVVTYTALVDGLCKAGDLSSAEF 385
Query: 318 IYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
I + ++ FP + +MI Y K + +++ +LMR + ++ P
Sbjct: 386 I---ITQMLEKSVFPNVVTYSSMINGYVKKGM---LEEAVSLMRKMEDQNVVP 432
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 82/179 (45%), Gaps = 9/179 (5%)
Query: 151 GTPMTKEEYT---KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSD 207
G P+ YT G+ AG + + + E + + + TY AL+ G
Sbjct: 324 GIPVDLVVYTVLMAGLFKAGDLREAEKTFKMLLE--DNEVPNVVTYTALVDGLCKAGDLS 381
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+ + + E ++ P++VTY+++I+ + + +++ + ++++D N+ PN FTY +
Sbjct: 382 SAEFIITQML-EKSVFPNVVTYSSMINGYVKKGMLEEAVSLMRKMEDQNVVPNGFTYGTV 440
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
I G A GK E +M K ++ +L H + R++++ LVK V
Sbjct: 441 IDGLFKA---GKQEVASEMSKEMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMV 496
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ +GL+D+ ++ K I P V++NTLI F ++ +A E
Sbjct: 163 TYNTVISGLCEHGLADEAYQFLSEMVK-IGILPDTVSFNTLIDGFCKVGNFARAKALVDE 221
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
I + NL T+ LI+ Y + +EE Y+ M PD T+
Sbjct: 222 ISELNL----ITHTILISSY---YNLHAIEEAYRDMVMSGFDPDVVTF 262
>gi|449433429|ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g16890, mitochondrial-like
[Cucumis sativus]
Length = 688
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 4/171 (2%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
+ I +YN ++ D+ +FRDL ISP+IVTYNTLI F R +D +
Sbjct: 462 ISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRG-ISPNIVTYNTLIGGFCRNGNMDKAQ 520
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
+ + +S P++FT+N LI G A + M V P+ TY +L+ +
Sbjct: 521 ELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSF 580
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357
G++ R + +K H + A+I Y+ +R +K E L
Sbjct: 581 CAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTG---KNRFQKAEKLF 628
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 35/190 (18%)
Query: 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKK----------- 218
++D A+++F + N+ + I TYN L+G + NG DK Q L L +
Sbjct: 480 SMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFN 539
Query: 219 -----------------------EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
E ++ P+++TYN LI F + V +++K
Sbjct: 540 SLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLH 599
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
+ P+ F++N LI GY + K E+++ M + PD TY L++ SG +
Sbjct: 600 GIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKA 659
Query: 316 EKIYELVKHH 325
+I+ +K +
Sbjct: 660 REIFLSMKEN 669
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 7/217 (3%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
GR+ + ++F + L T YNA++ A + + D F+ + N P
Sbjct: 205 GRLGLANYCVEVFGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSH-NCVPD 263
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
TYN LI RL +VD ++++ PNVFTY LI G+ A G+ ++ Q
Sbjct: 264 RFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQ 323
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
MK V+P+ T L+ G +K +EL+ V+ K+ I ++C
Sbjct: 324 TMKERNVVPNEATMRSLVHGVFRC---IAPDKAFELLLEFVERKQG--ITQLVCDNILYC 378
Query: 346 VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC 382
+++ EA+M + L +L ++ K C
Sbjct: 379 LSNNSMASEAVMFXPSSSTFNITLACVLKKLDLKVTC 415
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ ++ G + L R +K I P ++N LI + E F
Sbjct: 572 TYNILICSFCAIGDVSRSTHLLRQMKLHG-IQPDTFSFNALIQGYTGKNRFQKAEKLFDS 630
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + P+ +TY LI + K EI+ MK PD+ T L AHS
Sbjct: 631 MLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSDTLAHS 688
>gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana]
Length = 447
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 22/212 (10%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G CL +R ++ M + G P L T KG AG+I
Sbjct: 198 GWCLIKRTPKTLEVLKEMVERGINPNLT-----------------TYNTMLKGFFRAGQI 240
Query: 170 NNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ A + F E + + + TY ++ + G + +++F ++ +E + PS+ T
Sbjct: 241 RH---AWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREG-VLPSVAT 296
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN +I V + V++ F+E+ PNV TYN LI G A + + EE+ Q M+
Sbjct: 297 YNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRME 356
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
P+ TY +++R Y+ + + ++E
Sbjct: 357 NEGCEPNFQTYNMMIRYYSECSEVEKALGLFE 388
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 91/208 (43%), Gaps = 8/208 (3%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ TYN +L + G F ++KK + +VTY T++ FG + F
Sbjct: 224 LTTYNTMLKGFFRAGQIRHAWEFFLEMKKR-DCEIDVVTYTTVVHGFGVAGEIKRARNVF 282
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
E+ + P+V TYN +I +++ M P+ TY +L+RG H+
Sbjct: 283 DEMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHA 342
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G R E++ + +++ F MI YS+CS ++K L + + P L
Sbjct: 343 GEFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECS---EVEKALGLFEKMGSGDCLPNL 399
Query: 370 ---NVLLIRVYAKEDCLEEMEKSINDAF 394
N+L+ ++ ++ E+M + N AF
Sbjct: 400 DTYNILISGMFVRKRS-EDMVVAGNQAF 426
>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 79/368 (21%), Positives = 148/368 (40%), Gaps = 25/368 (6%)
Query: 144 RRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEA-ANKHLKTIGTYNALLGAYMY 202
RR + Y T G+ AGRI D LF + + T+ TY ++ A
Sbjct: 281 RRNEVSYTT------IIHGLCEAGRI---DEGISLFKKMREDDCYPTVRTYTVIIHALFG 331
Query: 203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF 262
N + + LF +++ E + P++ TY ++ + +D E+ + L P+V
Sbjct: 332 NDRNLEGMDLFNEMR-ERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVV 390
Query: 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
TYN LI GY EI +M++ P+ TY L+ G++ ++ K L+
Sbjct: 391 TYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHV---HKAMTLL 447
Query: 323 KHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALMR---LIPEKEYRPWLNVLLIRV 376
++ K P + ++I K D K+ L++ L+P++ W + I
Sbjct: 448 SKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQ----WTYSVFIDT 503
Query: 377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL 436
K +EE N E V + ++ + + +D+ + ++R S
Sbjct: 504 LCKSKRMEEACDLFNSLKEKGIKANEV-MYTALIDGHCKAGKIDEAISLLERMHSEDCLP 562
Query: 437 CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
S Y+S + + +V+E S+++ M + + T+ I+ G N+V
Sbjct: 563 NSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVF 622
Query: 497 GLMCKNGY 504
M G+
Sbjct: 623 NQMVSFGH 630
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 2/153 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I + +D A L ++ L TYN+L+ G + S+ ++
Sbjct: 532 YTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMS 591
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K + P++ TY LI R DH F ++ P+V+TY I Y T+
Sbjct: 592 K-MGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNV 650
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ E + M VMPD+ TY LL+ Y G
Sbjct: 651 KEAEGMMARMIEAGVMPDSLTYTLLISAYERLG 683
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/316 (19%), Positives = 128/316 (40%), Gaps = 41/316 (12%)
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-- 282
S+ +YN L+ + R L++D M+ + E+ + + PN++T N ++ Y + M VE
Sbjct: 178 SVRSYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAY--SKMGNIVEANL 235
Query: 283 -IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE--------------------- 320
+ ++ +AG + PD+ TY L+ GY + ++ K++
Sbjct: 236 YVSKIFQAG-LSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGL 294
Query: 321 -----------LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
L K + +P +R DR + L + E+ P +
Sbjct: 295 CEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNV 354
Query: 370 NVLLIRVYA--KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
+ + V A KE L+E + +N+ E K V +V ++ Y ++ +
Sbjct: 355 HTYTVMVDAMCKERKLDESRRILNEMME-KGLVPSVVTYNALIRGYCEEGRIEAALEILG 413
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
ES R Y+ + ++ ++ V + ++L +M K+ S T+ + + G
Sbjct: 414 LMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAG 473
Query: 488 QRRKVNQVLGLMCKNG 503
++L L+ +NG
Sbjct: 474 HFDSAYKLLDLLKENG 489
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 2/145 (1%)
Query: 175 AADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A DLF K +K Y AL+ + G D+ SL + E + P+ TYN+LI
Sbjct: 513 ACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSE-DCLPNSSTYNSLI 571
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ V + + + + P V TY LI + + ++ M +
Sbjct: 572 YGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHK 631
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKI 318
PD TY + Y SGN+ E +
Sbjct: 632 PDVYTYTAFIHTYCTSGNVKEAEGM 656
>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 5/194 (2%)
Query: 172 VDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
VD A +FAE K + + TYN L+G + L + K +SP+IVTYN
Sbjct: 279 VDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNK-VGLSPNIVTYN 337
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
LI+ F + +D F ++K S LSP + TYN LIAGY ++ + M+
Sbjct: 338 ILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEER 397
Query: 291 PVMPDTNTYLLLLRGYA---HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347
+ P TY +L+ +A H+ M + E D + ++ +C +
Sbjct: 398 CIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEA 457
Query: 348 DRIKKIEALMRLIP 361
++ K M L P
Sbjct: 458 SKLFKSLGEMHLQP 471
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/368 (22%), Positives = 148/368 (40%), Gaps = 43/368 (11%)
Query: 7 LSDAAQTELLLQRLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLL 66
+S + L+LQ Q H + T PL T+ + HS + D H + L
Sbjct: 65 ISGRIPSSLMLQLTQAHFTPCSTYTPL-YDTVVNAYVHSHSTDQALTFLHHMIHEGHVPL 123
Query: 67 SETLT-YPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVE 125
S T +R + + +EL + V LD + KG C G+ +
Sbjct: 124 SNTFNNLLCLLIRSNYFDKAWWIFNELKSKVV-LDAYSFGIMIKGCCEAGYFVKGFRLLA 182
Query: 126 LMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE---- 181
++++ G P + + YT I + NV LA +LF +
Sbjct: 183 MLEEFGLSPNVVI--------------------YTTLIDGCCKDGNVMLAKNLFCKMNRL 222
Query: 182 --AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
N H TY+ L+ + GL + ++ ++K+ + I P+ YN LIS +
Sbjct: 223 GLVPNPH-----TYSVLMNGFFKQGLQREGFQMYENMKR-SGIVPNAYAYNCLISEYCND 276
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK-VEEIYQMMKAGPVMPDTNT 298
+VD F E+++ ++ V TYN LI G +G+ V+ ++++ K G + P+ T
Sbjct: 277 GMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVG-LSPNIVT 335
Query: 299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
Y +L+ G+ + +++ +K +I YSK ++ + +
Sbjct: 336 YNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSK------VENLAGALD 389
Query: 359 LIPEKEYR 366
L+ E E R
Sbjct: 390 LVKEMEER 397
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 18/152 (11%)
Query: 169 INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFR--DLKKEAN---I 222
+ +D A LF + + L T+ TYN L+ Y K ++L DL KE I
Sbjct: 346 VRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGY------SKVENLAGALDLVKEMEERCI 399
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQE---IKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
+PS VTY LI F RL +H E A + ++ S L P+V+TY+ L+ G +
Sbjct: 400 APSKVTYTILIDAFARL---NHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKE 456
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++++ + + P++ Y ++ GY G+
Sbjct: 457 ASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGS 488
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 59/289 (20%), Positives = 119/289 (41%), Gaps = 43/289 (14%)
Query: 218 KEANISPSIVTYNTLISVF---GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
+E +SP++V Y TLI G ++L ++ F ++ L PN TY+ L+ G+
Sbjct: 185 EEFGLSPNVVIYTTLIDGCCKDGNVMLAKNL---FCKMNRLGLVPNPHTYSVLMNGFFKQ 241
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
+ + ++Y+ MK ++P+ Y L+ Y + G + + K++ ++ G ++
Sbjct: 242 GLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMRE--KGIACGVM 299
Query: 335 RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAF 394
I C R KK ++L+ + + ++ S N
Sbjct: 300 TYNILIGGLC----RGKKFGEAVKLVHK--------------------VNKVGLSPN--- 332
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454
+ T I+ ++ + +D + +S+G Y++ + Y+ +
Sbjct: 333 -----IVTYNIL---INGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENL 384
Query: 455 EEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
++KEME I SK T+ I+ A+A K ++ LM K+G
Sbjct: 385 AGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSG 433
>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
Length = 570
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 120/276 (43%), Gaps = 41/276 (14%)
Query: 101 KVFRVLDEKGSCLFRRHSNGY---AFVELMKQLGS-RPRLALEVLNWRRRQAGYGTPMTK 156
+VF + ++ S + +GY +E ++L P+ +++W GY
Sbjct: 141 QVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPKEKKNLISWNSMIGGY------ 194
Query: 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDL 216
A R + VD+A+ LFAE K L + +N+L+ Y+ +G + + LF +
Sbjct: 195 ---------AQREDGVDIASKLFAEMPEKDLIS---WNSLIDGYVKHGRIEDAKGLFDVM 242
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM-TAW 275
+ +VT+ T+I + +L V ++ F D +V YN ++ GY+ +
Sbjct: 243 PRR-----DVVTWATMIDGYAKLGFVHKAKSLF----DVMPHRDVVAYNSMMGGYVQNKY 293
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV---KHHVDGKEFP 332
+E Y M K + PD T +++L A G L + I+ + + +DGK
Sbjct: 294 HMEALEVFYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKRFLLDGK--- 350
Query: 333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
L A+I YSKC I++ A+ I K W
Sbjct: 351 LGVALIDMYSKCG---SIQQAMAVFEGIENKSIDHW 383
>gi|384249299|gb|EIE22781.1| hypothetical protein COCSUDRAFT_47692 [Coccomyxa subellipsoidea
C-169]
Length = 1226
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I ++ A +L A+ + + + + T++AL+ + G ++ D++
Sbjct: 139 YTAAISICVSAQQLERALELSADMQRRGVQRNVHTHSALMNVCIKCGQLKLALDVWEDMQ 198
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ I P++VTYNTLI V+G+L + + +K + P TYN L+ T+ W
Sbjct: 199 RD-GIVPNVVTYNTLIDVYGKLGQWEQALQVLRRMKFQGIEPVTRTYNTLMIACNTSGQW 257
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
++Y+ M+A +T +Y L+ ++ +G+LP++ Y
Sbjct: 258 QTALQLYEEMRAAGHALNTTSYNALISAHSKAGDLPQVLDTY 299
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV---FGRL 239
A H +YNAL+ A+ G + +R + ++ S++TY++LIS G
Sbjct: 269 AAGHALNTTSYNALISAHSKAGDLPQVLDTYRQMVQQ-GCERSVITYSSLISACEKSGEW 327
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
L F E N PNV T+N LI W K E++++M+ PD TY
Sbjct: 328 QLALRF---FDECLKDNCRPNVITFNSLITACAQGAQWEKARELFELMQQQGCTPDVVTY 384
Query: 300 LLLLRGYAHSG 310
L+ Y G
Sbjct: 385 TALISAYERGG 395
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+++ TY++L+ A +G F + K+ N P+++T+N+LI+ + +
Sbjct: 309 RSVITYSSLISACEKSGEWQLALRFFDECLKD-NCRPNVITFNSLITACAQGAQWEKARE 367
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
F+ ++ +P+V TY LI+ Y W + +Q M+A PD+ Y
Sbjct: 368 LFELMQQQGCTPDVVTYTALISAYERGGKWQLALQAFQAMQAKGCKPDSIVY 419
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 14/155 (9%)
Query: 200 YMYNGLSDKC---QSLFRDLKKEAN-----ISPSIVTYNTLISVF---GRLLLVDHMEAA 248
Y Y C Q L R L+ A+ + ++ T++ L++V G+L L +
Sbjct: 137 YTYTAAISICVSAQQLERALELSADMQRRGVQRNVHTHSALMNVCIKCGQLKLALDV--- 193
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+++++ + PNV TYN LI Y W + ++ + MK + P T TY L+
Sbjct: 194 WEDMQRDGIVPNVVTYNTLIDVYGKLGQWEQALQVLRRMKFQGIEPVTRTYNTLMIACNT 253
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
SG ++YE ++ A+I A+SK
Sbjct: 254 SGQWQTALQLYEEMRAAGHALNTTSYNALISAHSK 288
>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 112/252 (44%), Gaps = 13/252 (5%)
Query: 73 PDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGS 132
PDAR L + L LAN + ++F + E+G C+ H+ K
Sbjct: 332 PDARSYSIL---IHGLVKAGLAN--ETYELFYAMKEQG-CVLDTHAYNAVIDGFCKS--G 383
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIG 191
+ A ++L + + G P T Y I +I+ +D A LF EA + +K +
Sbjct: 384 KVNKAYQLLEEMKVK---GHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVV 440
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y++L+ + G D+ + +L ++ ++P++ T+N L+ + ++ FQ
Sbjct: 441 VYSSLIDGFGKVGRIDEAYLIMEELMQKG-LTPNVYTWNCLLDALVKAEEINEALICFQS 499
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+KD PN TY+ LI G + K +Q M+ + P+T TY ++ G A +GN
Sbjct: 500 MKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGN 559
Query: 312 LPRMEKIYELVK 323
+ ++ K
Sbjct: 560 ILEASGLFSRFK 571
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/277 (22%), Positives = 113/277 (40%), Gaps = 20/277 (7%)
Query: 96 VDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMT 155
+D+ ++F L++ R+ YA+ ++ GS + E RQ G+ +
Sbjct: 71 LDEAVELFEQLEQN-----RKVPCAYAYNTMIMGYGSAGKFD-EAYGLLERQKAKGSIPS 124
Query: 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRD 215
Y + G+ V+ A +F E + + TYN L+ G + + RD
Sbjct: 125 VIAYNCILTCLGKKRRVEEALRIFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEI-RD 183
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ A + P+++T N +I + ++ + F+ + D +PN T++ LI G
Sbjct: 184 DMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGL---G 240
Query: 276 MWGKVEEIY----QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
G+V++ Y +M+ G V P Y L+R + G KIY+ + H +
Sbjct: 241 KCGRVDDAYSLYEKMLDCGHV-PGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDL 299
Query: 332 PLIRA-MICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
LI M C + +K AL R I + P
Sbjct: 300 TLINTYMDCVFK----AGETEKGRALFREINAHGFIP 332
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 2/152 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I G++ +D A + E K L + T+N LL A + ++ F+ +K
Sbjct: 442 YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMK 501
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ P+ +TY+ LI+ R+ + +QE++ L PN TY +I+G A
Sbjct: 502 -DLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNI 560
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ ++ KA +PD+ +Y ++ G + +
Sbjct: 561 LEASGLFSRFKANGGIPDSASYNAMIEGLSSA 592
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 73/159 (45%), Gaps = 5/159 (3%)
Query: 167 GRINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G+ VD A L+ + + H+ Y +L+ ++ G + +++++ SP
Sbjct: 240 GKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMV-HTGCSPD 298
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+ NT + + + A F+EI P+ +Y+ LI G + A + + E++
Sbjct: 299 LTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFY 358
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
MK + DT+ Y ++ G+ SG ++ K Y+L++
Sbjct: 359 AMKEQGCVLDTHAYNAVIDGFCKSG---KVNKAYQLLEE 394
>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
Length = 629
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TY++L+ + + D+ + +F +L + P++VTYNTLI F + V+ F
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMF-ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF 418
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E+ L N TYN LI G A ++I++ M + V PD TY +LL G
Sbjct: 419 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 478
Query: 310 GNLPRMEKIYELVK 323
G L + ++E ++
Sbjct: 479 GKLEKALVVFEYLQ 492
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 91/199 (45%), Gaps = 12/199 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY A++ G D SL + ++K I +V YNT+I + +D A F +
Sbjct: 222 TYGAVVNGLCKRGDIDLALSLLKKMEK-GKIEADVVIYNTIIDGLCKYKHIDDAFALFNK 280
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + P+VFTYN LI+ W + M + P+ T+ L+ + G
Sbjct: 281 METKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGK 340
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
L EK+Y E++K +D F ++I + + DR+ + + + L+ K+ P N
Sbjct: 341 LVEAEKLYDEMIKRSIDPDIFTY-SSLINGF---CMHDRLDEAKHMFELMISKDCFP--N 394
Query: 371 VL----LIRVYAKEDCLEE 385
V+ LI+ + K +EE
Sbjct: 395 VVTYNTLIKGFCKAKRVEE 413
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 8/156 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y IK + V+ +LF E + + L TYN L+ G D Q +F+ +
Sbjct: 398 YNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMV 457
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + P I+TY+ L+ + ++ F+ ++ S + P+++TYN +I G A
Sbjct: 458 SDG-VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKA--- 513
Query: 278 GKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
GKVE +++ + V P+ Y ++ G+ G
Sbjct: 514 GKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKG 549
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 5/180 (2%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIG 191
R +E+ ++ G +T +G+ AG + D+A +F + + + I
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAG---DCDMAQKIFKKMVSDGVPPDII 466
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ LL G +K +F L+K + + P I TYN +I + V+ F
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQK-SKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCS 525
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + PNV Y +I+G+ + + + +++ MK +PD+ Y L+R G+
Sbjct: 526 LSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGD 585
Score = 38.5 bits (88), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM-TAWMWGKVEE 282
PSIV +N L+S ++ D + + + +++ +S ++++YN LI + + + +
Sbjct: 78 PSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAV 137
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ +MMK G PD T LL GY HS R+ LV V+
Sbjct: 138 LGKMMKLG-YEPDIVTLSSLLNGYCHS---KRISDAVALVDQMVE 178
>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 450
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 8/155 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+++ + + D + +F DL SP +VT+NT+I V+ R VD +E
Sbjct: 187 TYNSMIYGFCKHNRFDDAKHMF-DLMA----SPDVVTFNTIIDVYCRAKRVDEGMQLLRE 241
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
I L N TYN LI G+ ++++Q M + V PDT T +LL G+ +
Sbjct: 242 ISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEK 301
Query: 312 LPRMEKIYELV---KHHVDGKEFPLIRAMICAYSK 343
L +++E++ K +D + +I +C SK
Sbjct: 302 LEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSK 336
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 16/206 (7%)
Query: 163 IKFAGRINNVDLAADLFAEAA--NK------HLKTIGTYNALLGAYMYNGLSDKCQSLFR 214
I F IN + L + AA NK H+ + TY ++ G + +L
Sbjct: 11 ITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVV-TYGTIVNGMCKMGDTKSALNLLS 69
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGY 271
++ E +I P +V Y+ +I RL H A F E+ + ++PNVFTYN +I G+
Sbjct: 70 KME-ETHIKPDVVIYSAIID---RLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGF 125
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
+ W + + + M + PD T+ L+ G L EK+ + + H +
Sbjct: 126 CSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDT 185
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALM 357
+MI + K + D K + LM
Sbjct: 186 VTYNSMIYGFCKHNRFDDAKHMFDLM 211
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 5/204 (2%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL--KTI 190
R + E + R + G Y I ++N++ A DLF E + + TI
Sbjct: 228 RAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTI 287
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
T N LL + N ++ LF ++ + + I V YN +I + VD F
Sbjct: 288 -TCNILLYGFCENEKLEEALELF-EVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFC 345
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + P+V TYN +I+G+ ++ MK PD +TY L+RG +G
Sbjct: 346 SLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAG 405
Query: 311 NLPR-MEKIYELVKHHVDGKEFPL 333
+ + +E I E+ + G F +
Sbjct: 406 EIDKSIELISEMRSNGFSGDAFTI 429
>gi|410110091|gb|AFV61125.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
micrantha]
Length = 406
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 105 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 163
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN +I Y K + Q M++ +
Sbjct: 164 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIE 223
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 224 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 283
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 108/241 (44%), Gaps = 28/241 (11%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 169 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG-IEPN 225
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + + +I Y A + + +
Sbjct: 226 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLH 285
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC 344
+K +P DT ++L A +G + ++ + K+ + MI SK
Sbjct: 286 ELKRPDNIPRDTAIHIL-----AGAGRIEEATYVFRQAIDAGEAKDITVFERMIHLLSKY 340
Query: 345 SVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTT 402
+ ++ MR + Y P NV+ ++ Y K L+E +K+ ND + V
Sbjct: 341 KKYSNVVEVFDKMRGLG---YFPDSNVIAVVLNAYGK---LQEFDKA-NDVYMEMQEVGC 393
Query: 403 V 403
V
Sbjct: 394 V 394
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 110/262 (41%), Gaps = 11/262 (4%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P +V YN +I+VFG+ L + E+K + + PN +Y+ L
Sbjct: 34 KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 92
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + ++ M+ + D T +++ Y G +K++ ++
Sbjct: 93 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 152
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCL 383
++ Y + + L RL+ K NV+ +I +Y K
Sbjct: 153 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMIMIYGKTLEH 207
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
E+ I + ++ I+S + + +D+ A ++ S+G + + L+ +
Sbjct: 208 EKANNLIQEMQSRGIEPNSI-TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 266
Query: 444 KMVMYASQRRVEEMESVLKEME 465
+V Y V + +L E++
Sbjct: 267 MIVAYERAGLVAHAKRLLHELK 288
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/270 (18%), Positives = 105/270 (38%), Gaps = 2/270 (0%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ + +V Y+ LI + +L + F +K S +P++ YN +I + A ++
Sbjct: 8 EQDQVPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLF 67
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+ + MK VMP+T +Y LL Y + ++ ++ + M
Sbjct: 68 REARSLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIM 127
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397
I Y + + K+ MR + + N LL RVY + E + + K
Sbjct: 128 IDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL-RVYGDAELFGE-AIHLFRLMQRK 185
Query: 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
V ++ Y + +K N ++ +S G Y + + ++ +++
Sbjct: 186 NIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRA 245
Query: 458 ESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+ +++ + ++ + F M AY G
Sbjct: 246 AMLFQKLRSSGVEIDQILFQTMIVAYERAG 275
>gi|350582454|ref|XP_003125231.3| PREDICTED: LOW QUALITY PROTEIN: leucine-rich PPR motif-containing
protein, mitochondrial [Sus scrofa]
Length = 1394
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 149/346 (43%), Gaps = 42/346 (12%)
Query: 179 FAEAANKHLKTIGT------YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
FA L+ +GT YNALL Y+ N ++K ANI P+ VTY L
Sbjct: 146 FAHRIWDELQKLGTVYDISHYNALLKVYLQNEYKFSPTDFLAKMEK-ANIQPNRVTYQRL 204
Query: 233 ISVFGRLLLVDHMEA--AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
I+ + ++ F + KD ++ VF+ L+ G+ A E I +MK
Sbjct: 205 IAAYCNEGDIEGASKILGFMKTKDLPITEAVFSA--LVTGHARAGDMENAENILTVMKEA 262
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK---HHVDGKEFPLIRAMICAYSKCSVT 347
+ P +TYL LL YA G++ +++ E V+ H + ++ + +I ++SK
Sbjct: 263 GIEPGPDTYLALLNAYAEKGDIDHVKQTLEKVEKSDHFLMDRD---LLQIIFSFSKAGYP 319
Query: 348 DRIKKIEALMRLIPEKEYRP-WLNVLLIRVYAK-ED--------CLEEMEKSINDAFEHK 397
+ +I L ++ E+ Y P +N++L+ V K ED C E S++D
Sbjct: 320 QYVSEI--LEKITYERRYIPDTMNLILLLVTEKLEDTALQILLACPVSREDSLSD----- 372
Query: 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
+ + C+ + +KL ++ K+ + A RL RS + + +++
Sbjct: 373 --FGSFFLRHCVTMN----TPTEKLKDYCKKLKEA--RLHRSPFQFTLQCALLANKIDLA 424
Query: 458 ESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+S++K ++ FW + Y + + ++L M + G
Sbjct: 425 KSLMKALKEEGFPIRTHYFWPLLVGYQKEKNVQGIVEILKGMHELG 470
>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 85/375 (22%), Positives = 151/375 (40%), Gaps = 9/375 (2%)
Query: 123 FVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEA 182
+ + +LG + +AL+V N R ++AG+G + Y+ + GR A +F
Sbjct: 206 MISTLGRLG-KVEIALDVFN-RAQKAGFGNNVYA--YSAMVSAYGRSGRCREALKVFQAM 261
Query: 183 ANKHLK-TIGTYNALLGAYMYNGLSDK-CQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
K + TYN ++ A G+ K +F +++KE + P +T+N+LI+V R
Sbjct: 262 KKAGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQKEG-VEPDRITFNSLIAVCSRGG 320
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
L + + F E++ + ++FT+N LI I M+ + P+ TY
Sbjct: 321 LWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYS 380
Query: 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI 360
++ GY G +Y +K + +I Y+K D M +
Sbjct: 381 TMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERV 440
Query: 361 PEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420
K N LI Y K+ ++ + D + + V V ++ SY +
Sbjct: 441 GLKADVVTYNA-LIDAYGKQGKYKD-AACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQ 498
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480
++N + AG + LY S + VE+ +L+EM I + T+ +
Sbjct: 499 DVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLI 558
Query: 481 YAYATCGQRRKVNQV 495
AY GQ K+ V
Sbjct: 559 DAYGRYGQADKLEAV 573
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 97/399 (24%), Positives = 165/399 (41%), Gaps = 37/399 (9%)
Query: 86 SALRDELLANVDDLDKVFRVLDEKGSCLFRR------HSNGYAFVELMKQLG--SRPRLA 137
S L +++ + L KV LD +F R +N YA+ ++ G R R A
Sbjct: 200 SKLASIMISTLGRLGKVEIALD-----VFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREA 254
Query: 138 LEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDL--AADLFAEAANKHLKTIG-TYN 194
L+V ++ +T Y I G+ VDL A D+F E + ++ T+N
Sbjct: 255 LKVFQAMKKAGCKPNLIT---YNTIIDACGK-GGVDLKQALDIFDEMQKEGVEPDRITFN 310
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
+L+ GL + Q +F ++++ I I T+NTLI + ++ + ++
Sbjct: 311 SLIAVCSRGGLWEDSQRVFAEMQRRG-IEQDIFTFNTLIDAVCKGGQMELAASIMTTMRG 369
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
N+SPNV TY+ +I GY + + +Y MK V PD +Y L+ YA G
Sbjct: 370 KNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDD 429
Query: 315 ME---KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
K E V D + A+I AY K + K L + + P NV
Sbjct: 430 ALIACKDMERVGLKADVVTY---NALIDAYGK---QGKYKDAACLFDKMKGEGLVP--NV 481
Query: 372 L----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
L LI Y+K +++ + F+ V + ++ S +C V+ ++
Sbjct: 482 LTYSALIDSYSKAGMHQDVSNVFTE-FKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQ 540
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466
AG + Y+S + Y + +++E+V M N
Sbjct: 541 EMTQAGIQPNIVTYNSLIDAYGRYGQADKLEAVKANMPN 579
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 176 ADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234
+++F E LK + Y++L+ + GL + L +++ +A I P+IVTYN+LI
Sbjct: 501 SNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMT-QAGIQPNIVTYNSLID 559
Query: 235 VFGRLLLVDHMEAAFQEIKDS 255
+GR D +EA + +S
Sbjct: 560 AYGRYGQADKLEAVKANMPNS 580
>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Glycine max]
Length = 1024
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 1/142 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ ++G +K LF ++KK I PS+ TY LI F + L+ F E
Sbjct: 455 TYSKVIGFLCDASKVEKAFLLFEEMKKNG-IVPSVYTYTILIDSFCKAGLIQQARNWFDE 513
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ N +PNV TY LI Y+ A ++++MM P+ TY L+ G+ +G
Sbjct: 514 MLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQ 573
Query: 312 LPRMEKIYELVKHHVDGKEFPL 333
+ + +IY ++ ++ + +
Sbjct: 574 IDKACQIYARMQGDIESSDIDM 595
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 116/264 (43%), Gaps = 23/264 (8%)
Query: 159 YTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+K I F + V+ A LF E N + ++ TY L+ ++ GL + ++ F ++
Sbjct: 456 YSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEML 515
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ N +P++VTY +LI + + V F+ + PNV TY LI G+ A
Sbjct: 516 RD-NCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQI 574
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL-------------PRMEKIYELVK- 323
K +IY M+ D + Y L + N+ R+E+ +EL+
Sbjct: 575 DKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHELLDT 634
Query: 324 HHVDGKEFPLI--RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAK 379
V+G E I A+I + K T +++ + + + E+ Y P L LI K
Sbjct: 635 MSVNGCEPNQIVYDALIDGFCK---TGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFK 691
Query: 380 EDCLEEMEKSINDAFEHKTSVTTV 403
E L+ + K ++ E+ + V
Sbjct: 692 EKRLDLVLKVLSKMLENSCTPNVV 715
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 10/187 (5%)
Query: 136 LALEVLNWRRRQAGY-GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYN 194
+ALE L R + GY +P T Y I+ R + +D A + E +N + G
Sbjct: 188 VALEELG-RLKDFGYKASPTT---YNALIQVFLRADKLDTAFLVHREMSNSGFRMDG--- 240
Query: 195 ALLGAYMYNGL-SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
LG + Y+ + +C L+KE + P V YN ++S L ++
Sbjct: 241 CTLGCFAYSLCKAGRCGDALSLLEKEEFV-PDTVFYNRMVSGLCEASLFQEAMDILDRMR 299
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
+ PNV TY L++G + G+ + I MM P+ + L+ Y S +
Sbjct: 300 SISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYS 359
Query: 314 RMEKIYE 320
K+++
Sbjct: 360 YAYKLFK 366
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 177 DLFAEAANKHLKTIGTYNALLGAYMYNGLS--DKCQSLFRDLKK--EANISPSIVTYNTL 232
DL + +K L+ T N ++ M +GL K + +R + K E P+++TY +
Sbjct: 696 DLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAM 755
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
I FG++ ++ ++++ +PN TY LI + + + + MK
Sbjct: 756 IDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDEMK 811
>gi|147742767|gb|ABQ50548.1| hypothetical protein [Brassica rapa]
Length = 229
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 58/129 (44%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ D+ + + P IVT+N LI+ + + LVD F+E
Sbjct: 12 TYNSLIDGLCIENRLDEANQMVDVVMVSKGCDPDIVTFNILINGYCKAKLVDEGMRVFRE 71
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
I L + TYN L+ G+ A +E++Q M + PD TY +LL G +G
Sbjct: 72 ISLRGLVADTVTYNTLVQGFCEAGKLDVAKELFQEMVSQGARPDIVTYRILLDGLCDNGE 131
Query: 312 LPRMEKIYE 320
L I E
Sbjct: 132 LQEALDILE 140
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 76/184 (41%), Gaps = 2/184 (1%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I T+N L+ Y L D+ +FR++ ++ + VTYNTL+ F +D + F
Sbjct: 46 IVTFNILINGYCKAKLVDEGMRVFREISLRGLVADT-VTYNTLVQGFCEAGKLDVAKELF 104
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
QE+ P++ TY L+ G + +I + M+ + L +
Sbjct: 105 QEMVSQGARPDIVTYRILLDGLCDNGELQEALDILEKMQKCKKGSLSEADKLFRKMGEED 164
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY-RPW 368
G P L++ H+ G +I +C + ++ ++ ++ + + +
Sbjct: 165 GTAPSECTYNTLIRAHLGGSGVATSVELIEEMKRCGFSADASTMKMVIDMLSDGRLNKSF 224
Query: 369 LNVL 372
L++L
Sbjct: 225 LDML 228
>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
Length = 550
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 124/301 (41%), Gaps = 18/301 (5%)
Query: 31 PPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETLTY-PDARVRKDLTQTVSALR 89
PPLSV +S +H T LC H L +++ Y PDA + + +
Sbjct: 103 PPLSVPPSEQSYSHVITL-LCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCT--- 158
Query: 90 DELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRR-RQA 148
N LD +L + F R YA+ L+ L +R R V + Q
Sbjct: 159 -----NAGLLDAAVTLLTKASQ--FGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQD 211
Query: 149 GYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLS 206
G +P + IK R+ N A +L TI T+N L+
Sbjct: 212 GLYSP-DGWSFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTI-THNILVDGLCRAKQV 269
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
++ L R L+++ P++VTY ++IS + + ++ + + ++ +S PN TYN
Sbjct: 270 NRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNV 329
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHH 325
LI GY A +Y+ + PD T+ L+ GY G L +I+ E+ +HH
Sbjct: 330 LINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHH 389
Query: 326 V 326
+
Sbjct: 390 I 390
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 72/168 (42%), Gaps = 9/168 (5%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R +D A ++ E H++ + T++ ++ + S + R+L A+I+P
Sbjct: 371 RCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQT 430
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---- 282
YN +I + + V+ ++++ P+ +TY LI G+ M G++ E
Sbjct: 431 FIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGH---CMKGRIPEAITL 487
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
++M++ G PD T + +G +++I + H +
Sbjct: 488 FHKMVETG-CRPDKITVNSFISCVLKAGMPNEVDQIMLIASGHASASQ 534
>gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 890
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 79/140 (56%), Gaps = 2/140 (1%)
Query: 168 RINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+ +DLA +F E ++K + + TY+A++ Y L + +L+ ++K + +
Sbjct: 366 KAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRS-VCLDR 424
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
V+YNTL+ ++ +L +D +E++ S ++ +V TYN L++GY M+ +V +++
Sbjct: 425 VSYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFEE 484
Query: 287 MKAGPVMPDTNTYLLLLRGY 306
MKA + P+T TY ++ Y
Sbjct: 485 MKARNIYPNTLTYSTMIDMY 504
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+LL G+ + Q L ++ I P + TYNT + + +D F+E
Sbjct: 321 TYNSLLSVCASKGMWEMAQKLLSEMDHRC-IVPDVFTYNTYLDTLCKAGQIDLARRVFEE 379
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + PNV TY+ ++ GY A + +Y+ MK V D +Y L+ Y GN
Sbjct: 380 MSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLDRVSYNTLVGIYEKLGN 439
Query: 312 LPR-MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
L +EK E+ + ++ ++ A++ Y K + D ++++
Sbjct: 440 LDEAIEKCKEMERSGIN-RDVVTYNALLSGYGKHGMYDEVRRL 481
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 5/203 (2%)
Query: 122 AFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE 181
A + + +LG LAL + R R GYG+ T ++ I GR A DLF
Sbjct: 218 AMIGTLGRLG-EINLALGLFE-RARLEGYGS--TVHSFSAMISAFGRNGRFPDAVDLFRS 273
Query: 182 AAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
++ + + TYN+++ A +S F D + P +TYN+L+SV
Sbjct: 274 MSSWGVVPNVITYNSIIDAGAKGEVSFDVVVKFYDEMIANGLMPDRLTYNSLLSVCASKG 333
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
+ + + E+ + P+VFTYN + A +++ M + V P+ TY
Sbjct: 334 MWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLCKAGQIDLARRVFEEMSSKRVWPNVVTYS 393
Query: 301 LLLRGYAHSGNLPRMEKIYELVK 323
++ GYA + L +YE +K
Sbjct: 394 AMMDGYAKANLLEDALNLYEEMK 416
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN L+G Y G D+ +++++ + I+ +VTYN L+S +G+ + D + F+E
Sbjct: 426 SYNTLVGIYEKLGNLDEAIEKCKEMER-SGINRDVVTYNALLSGYGKHGMYDEVRRLFEE 484
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
+K N+ PN TY+ +I Y M+ + ++Y+ K
Sbjct: 485 MKARNIYPNTLTYSTMIDMYTKGEMFQEAMDVYREFK 521
>gi|449503889|ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Cucumis sativus]
Length = 697
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 4/171 (2%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
+ I +YN ++ D+ +FRDL ISP+IVTYNTLI F R +D +
Sbjct: 471 ISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRG-ISPNIVTYNTLIGGFCRNGNMDKAQ 529
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
+ + +S P++FT+N LI G A + M V P+ TY +L+ +
Sbjct: 530 ELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSF 589
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357
G++ R + +K H + A+I Y+ +R +K E L
Sbjct: 590 CAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTG---KNRFQKAEKLF 637
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 35/190 (18%)
Query: 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKK----------- 218
++D A+++F + N+ + I TYN L+G + NG DK Q L L +
Sbjct: 489 SMDRASEMFRDLHNRGISPNIVTYNTLIGGFCRNGNMDKAQELLEMLLESRFRPDIFTFN 548
Query: 219 -----------------------EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
E ++ P+++TYN LI F + V +++K
Sbjct: 549 SLIDGLCQAHKHENAFGCFTEMVEWDVPPNVITYNILICSFCAIGDVSRSTHLLRQMKLH 608
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
+ P+ F++N LI GY + K E+++ M + PD TY L++ SG +
Sbjct: 609 GIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKSLCKSGRHDKA 668
Query: 316 EKIYELVKHH 325
+I+ +K +
Sbjct: 669 REIFLSMKEN 678
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 87/195 (44%), Gaps = 7/195 (3%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
GR+ + ++F + L T YNA++ A + + D F+ + N P
Sbjct: 205 GRLGLANYCVEVFGQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSH-NCVPD 263
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
TYN LI RL +VD ++++ PNVFTY LI G+ A G+ ++ Q
Sbjct: 264 RFTYNILIHGVCRLGVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKVLQ 323
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
MK V+P+ T L+ G +K +EL+ V+ K+ I ++C
Sbjct: 324 TMKERNVVPNEATMRSLVHGVFRC---IAPDKAFELLLEFVERKQG--ITQLVCDNILYC 378
Query: 346 VTDRIKKIEALMRLI 360
+++ EA+M LI
Sbjct: 379 LSNNSMASEAVMFLI 393
Score = 43.1 bits (100), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ ++ G + L R +K I P ++N LI + E F
Sbjct: 581 TYNILICSFCAIGDVSRSTHLLRQMKLHG-IQPDTFSFNALIQGYTGKNRFQKAEKLFDS 639
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + P+ +TY LI + K EI+ MK PD+ T L AHS
Sbjct: 640 MLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSDTLAHS 697
>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 80/373 (21%), Positives = 145/373 (38%), Gaps = 22/373 (5%)
Query: 124 VELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE-A 182
+E+++Q G ++ E++ R TPM E + I+ G + A +F +
Sbjct: 129 LEVVEQYGEMWKMIQEMV---RNPVCVVTPM---ELSDIIRMLGNAKMISKAVAIFYQIK 182
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
A K T YN+++ M+ G +K L+ ++ E P VTY+ LIS F +L
Sbjct: 183 ARKCQPTAHAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQ 242
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
D E+KD+ + P Y L+A +++ M+ PD TY L
Sbjct: 243 DSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTEL 302
Query: 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS-VTDRIKKIEAL--MRL 359
+RG +G L + ++ + L+ MI K + D IK E + +R
Sbjct: 303 IRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRC 362
Query: 360 IPE-KEYRPWLNVLL---IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR 415
IP Y + L RV E M+ S S+ ++ + +
Sbjct: 363 IPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSI--------LIDGFCK 414
Query: 416 CNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKT 475
N +K ++ + G+ C + Y S + +R + + +E++ S +
Sbjct: 415 TNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARV 474
Query: 476 FWIMYYAYATCGQ 488
+ +M G+
Sbjct: 475 YAVMIKHLGKAGR 487
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 3/184 (1%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI- 190
S+ R++ E+ +W R G G + Y+ I + N + A L E K
Sbjct: 379 SKSRVS-EISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCP 437
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
Y +L+ A D LF++LK+ S S Y +I G+ +D F
Sbjct: 438 AAYCSLIDALGKAKRYDLANELFQELKENCG-SSSARVYAVMIKHLGKAGRLDDAVDLFD 496
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+ +PNV+ YN L++G A M + + M+ +PD N+Y ++L A +G
Sbjct: 497 EMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTG 556
Query: 311 NLPR 314
R
Sbjct: 557 GPDR 560
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 7/187 (3%)
Query: 122 AFVELMKQLGSRPR--LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF 179
A+ L+ LG R LA E+ + G + Y IK G+ +D A DLF
Sbjct: 439 AYCSLIDALGKAKRYDLANELFQELKENCGSSSARV---YAVMIKHLGKAGRLDDAVDLF 495
Query: 180 AEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238
E + YNAL+ G+ D+ + R ++ I P I +YN +++ +
Sbjct: 496 DEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCI-PDINSYNIILNALAK 554
Query: 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298
D +K S + P+ +YN ++ A M+ + ++ + M A D T
Sbjct: 555 TGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLIT 614
Query: 299 YLLLLRG 305
Y +L
Sbjct: 615 YSSILEA 621
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 2/169 (1%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKC 209
G P Y I G+ DLA +LF E N + Y ++ G D
Sbjct: 432 GFPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDA 491
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
LF ++ + +P++ YN L+S R ++D + ++D P++ +YN ++
Sbjct: 492 VDLFDEMNR-LGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILN 550
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
+ + MK + PD +Y +L +H+G K+
Sbjct: 551 ALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKL 599
>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 106/225 (47%), Gaps = 11/225 (4%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
++LAA + + K++ + TY+ ++ Y G ++ L+ D+K E+ + P V+
Sbjct: 354 GQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMK-ESGVRPDRVS 412
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YNTLI ++ +L D A ++++ L +V TYN LI Y + ++ MK
Sbjct: 413 YNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMK 472
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
A ++P+ TY L+ Y+ +G I+ K + L ++I + KC +
Sbjct: 473 AEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGL-- 530
Query: 349 RIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKS 389
++ L++ + + +P N++ LI Y + ++ +E +
Sbjct: 531 -VEDAVVLLQEMTQAGIQP--NIVTYNSLIDAYGRNGQVDNVEAA 572
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 88/391 (22%), Positives = 153/391 (39%), Gaps = 16/391 (4%)
Query: 123 FVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEA 182
+ + +LG + +AL+V N R ++AG+G + Y+ + GR A +F
Sbjct: 205 MISTLGRLG-KVEIALDVFN-RAQKAGFGNNVYA--YSAMVSAYGRSGRCREALKVFQAM 260
Query: 183 ANKHLK-TIGTYNALLGAYMYNGLS-DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
K + TYN ++ A G+ K +F +++KE + P +T+N+LI+V R
Sbjct: 261 KKAGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKEG-VEPDRITFNSLIAVCSRGS 319
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
L + + F E++ + ++FTYN LI I M+ + P+ TY
Sbjct: 320 LWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYS 379
Query: 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI 360
++ GY G +Y +K + +I Y+K D M +
Sbjct: 380 TMIDGYGKLGCFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERV 439
Query: 361 PEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420
K N LI Y K+ ++ + D + + V V ++ +Y +
Sbjct: 440 GLKADVVTYNA-LIDAYGKQGKYKD-AAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQ 497
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480
+ + AG + LY S + VE+ +L+EM I + T+ +
Sbjct: 498 DATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLI 557
Query: 481 YAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
AY GQ V G M P+N F
Sbjct: 558 DAYGRNGQVDNVEAAKGNM-------PINVF 581
>gi|410110145|gb|AFV61152.1| pentatricopeptide repeat-containing protein 123, partial [Nashia
inaguensis]
Length = 433
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I PS+V+YNTL+
Sbjct: 136 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPSVVSYNTLL 194
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M++ +
Sbjct: 195 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIE 254
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 255 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 314
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/308 (18%), Positives = 122/308 (39%), Gaps = 36/308 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + ++ Y+ LI + +L + F
Sbjct: 14 TYSTLITHFGKEGLFDAAXSWLQKMEQD-QVPGDLILYSNLIELSXKLCDYSKAISIFSR 72
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S P++ YN +I + A ++ + + MK VMP+T +Y LL Y +
Sbjct: 73 LKRSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKK 132
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 133 FLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPSVVSYNT 192
Query: 372 LLIRVYAKEDCLEE------------MEKSI----------NDAFEHKTSVTTVRIMRC- 408
LL RVY + E +E+++ EH+ + ++ M+
Sbjct: 193 LL-RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSR 251
Query: 409 -----------IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
I+S + + +D+ A ++ S+G + + L+ + +V Y V
Sbjct: 252 GIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA 311
Query: 458 ESVLKEME 465
+ +L E++
Sbjct: 312 KRLLHELK 319
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 84/182 (46%), Gaps = 25/182 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 200 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG-IEPN 256
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + + +I Y A + + +
Sbjct: 257 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLH 316
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P DT ++L G R+E+ + + +D K+ + MI
Sbjct: 317 ELKRPDNIPRDTAIHILAGAG--------RIEEATYVFRQAIDAGXVKDITVFERMIHLL 368
Query: 342 SK 343
SK
Sbjct: 369 SK 370
>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
Length = 886
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 77/349 (22%), Positives = 145/349 (41%), Gaps = 12/349 (3%)
Query: 170 NNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
N+D A +L E + I Y++++ Y KC +F LK E P+I++
Sbjct: 370 GNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLK-ECGFKPTIIS 428
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y LI+++ ++ V A +E++ + N TY+ LI G++ + I++ M
Sbjct: 429 YGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMI 488
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+ PD Y LL+ + GN+ R +I+E ++ R +I ++
Sbjct: 489 KSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMK 548
Query: 349 RIKKIEALMRLIPEKEYRPWLNVL---LIRVYAKEDCLEEMEK-SINDAFEHKTSVTTVR 404
R LMR N L L+R + E + ++K SI ++ + T
Sbjct: 549 RAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTI-- 606
Query: 405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
IMR Y + K + + + +G +L +Y + + R++ +V +EM
Sbjct: 607 IMR----GYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREM 662
Query: 465 ENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
KI + + I+ +A G + +L M ++G ++ F S
Sbjct: 663 SFQKIPRNTFIYNILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTS 711
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L+ + G + L + +K E I P+I T+ + I+ + + E QE+
Sbjct: 674 YNILIDGWARRGDVWEAADLLKQMK-EDGIPPNIHTFTSYINACCKAGDMQRAENVIQEM 732
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
D L PNV T+ LI G+ + + + ++ MK+ + PD Y L+
Sbjct: 733 ADVGLKPNVKTFTTLIKGWARVSLPDRALKCFEEMKSAGLKPDEAAYHCLV 783
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 64/356 (17%), Positives = 132/356 (37%), Gaps = 63/356 (17%)
Query: 202 YNGLSDKCQSLFRDLKK-----EANIS-------PSIVTYNTLISVFGRLLLVDHMEAAF 249
+ G D C+ R L+ +A +S PS + ++ + + H A F
Sbjct: 215 HKGREDACREFRRVLESRPEDWQAVVSAFERIPKPSRREFGLMVVYYAKRGDKHHARATF 274
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAW-MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ ++ + PN F + L+ Y A M G + + +M G M TY +L+ GY
Sbjct: 275 ENMRARGIEPNAFVFTSLVHAYAVAGDMRGALSCVEEMKSEGIEM-TVVTYSILISGYGK 333
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ + + +++ K +D + +I A+ + DR E L+R + E
Sbjct: 334 TNDAQSADNLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDR---AEELVREMEEDGIDAP 390
Query: 369 LNVLLIRVYA------KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
++V ++ ++ CL E+ F+ T+ C+++ Y + V K
Sbjct: 391 IDVYHSMMHGYTVVQDEKKCLIVFERLKECGFK-----PTIISYGCLINLYVKVGKVPKA 445
Query: 423 ANFVKRAES-----------------------------------AGWRLCRSLYHSKMVM 447
K ES +G + R++Y+ +
Sbjct: 446 IAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEA 505
Query: 448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ ++ + + M+ ++ S +TF + +A G ++ L LM ++G
Sbjct: 506 FCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSG 561
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R +V AADL + + I T+ + + A G + +++ +++ + + P++
Sbjct: 683 RRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMA-DVGLKPNV 741
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
T+ TLI + R+ L D F+E+K + L P+ Y+ L+ ++
Sbjct: 742 KTFTTLIKGWARVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTSLLS 788
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 2/174 (1%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G + YT ++ ++ A + F + LK + Y LL A +G
Sbjct: 596 GIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSA 655
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
++ R++ + I + YN LI + R V +++K+ + PN+ T+ I
Sbjct: 656 LAVTREMSFQ-KIPRNTFIYNILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYIN 714
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
A + E + Q M + P+ T+ L++G+A R K +E +K
Sbjct: 715 ACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWARVSLPDRALKCFEEMK 768
Score = 38.5 bits (88), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 59/328 (17%), Positives = 136/328 (41%), Gaps = 19/328 (5%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ TY+ L+ Y + +LF++ K + + I+ Y+ +I + +D E
Sbjct: 320 TVVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLNGII-YSNIIHAHCQSGNMDRAEEL 378
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+E+++ + + Y+ ++ GY K +++ +K P +Y L+ Y
Sbjct: 379 VREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCLINLYVK 438
Query: 309 SGNLPRMEKIYELVKHHV---DGKEFP-LIRAMICAYSKCSVTDRIKKIEALMR--LIPE 362
G +P+ I + ++ H + K + LI I + + E +++ L P+
Sbjct: 439 VGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLH---DFANAFSIFEDMIKSGLQPD 495
Query: 363 KEYRPWLNVLLIRVYAKEDCLEEMEKSIN--DAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420
+ + LL+ + K + M+++I + + + + R R I+ + +
Sbjct: 496 RA----IYNLLVEAFCK---MGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMK 548
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480
+ + + +G Y++ + + +VE+ SVL +M I ++ T+ I+
Sbjct: 549 RAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIM 608
Query: 481 YAYATCGQRRKVNQVLGLMCKNGYDVPV 508
YA G K + + ++G + V
Sbjct: 609 RGYAASGDIGKAFEYFTKIKESGLKLDV 636
>gi|302776756|ref|XP_002971525.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
gi|300160657|gb|EFJ27274.1| hypothetical protein SELMODRAFT_95815 [Selaginella moellendorffii]
Length = 356
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 92/199 (46%), Gaps = 2/199 (1%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G +T Y I + ++D ++ E + L+ + ++NAL+ AY + ++
Sbjct: 93 GVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYAMSRKPERG 152
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+F ++K A + P IVTY TLI +F R + F+E+ + P+ F Y+ L++
Sbjct: 153 LQVFSNMKA-AGVLPDIVTYTTLIQMFSRSAMHKEAIEMFEEMVVNKCQPDFFVYSLLVS 211
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329
Y A + I+ ++ P+ TY L+ + H G L K + ++ +
Sbjct: 212 VYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRA 271
Query: 330 EFPLIRAMICAYSKCSVTD 348
+ L+ MI AY+K + +
Sbjct: 272 DVHLLNTMIDAYAKAGMVN 290
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 113/246 (45%), Gaps = 13/246 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ NG LF ++K ++ ++ +YN +I F + +D +E +E
Sbjct: 67 TYDILVSGSGKNGYP--IDRLFLEIKSRG-VALTLRSYNVVICAFTKEGSIDKVEEVIRE 123
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ L P++F++N LIA Y + + +++ MKA V+PD TY L++ ++ S
Sbjct: 124 MIRQELRPDLFSFNALIAAYAMSRKPERGLQVFSNMKAAGVLPDIVTYTTLIQMFSRSAM 183
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
+++E + + +F + ++ Y K + I ++L + +RP N+
Sbjct: 184 HKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKAGLVADALLIFHRLQL---EGHRP--NI 238
Query: 372 L----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
+ LI + + LEE K + E V ++ ++ +Y + V+ AN +
Sbjct: 239 VTYTSLISAHLHKGLLEESRKHFSQ-MEAYGCRADVHLLNTMIDAYAKAGMVNDAANLLH 297
Query: 428 RAESAG 433
R + G
Sbjct: 298 RLTAQG 303
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I+ R A ++F E NK Y+ L+ Y GL +F L+
Sbjct: 171 YTTLIQMFSRSAMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKAGLVADALLIFHRLQ 230
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E + P+IVTY +LIS L++ F +++ +V N +I Y A M
Sbjct: 231 LEGH-RPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMIDAYAKAGMV 289
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ + A V P+ +Y +++ G+ H+G++
Sbjct: 290 NDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGHV 324
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 14/152 (9%)
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSN---LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
++ + R L++ E FQ IK + L P YN +IA Y A ++Y M
Sbjct: 2 VLGILSRARLIEDAEELFQWIKLQDWDKLRP----YNAMIAAYYQAKRPKDAWDVYYQML 57
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
A + PD TY +L+ G +G P +++++ +K +ICA++K
Sbjct: 58 AEGIDPDDVTYDILVSGSGKNG-YP-IDRLFLEIKSRGVALTLRSYNVVICAFTK---EG 112
Query: 349 RIKKIEALMRLIPEKEYRPWLNVL--LIRVYA 378
I K+E ++R + +E RP L LI YA
Sbjct: 113 SIDKVEEVIREMIRQELRPDLFSFNALIAAYA 144
>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 594
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ Y + D+ + +F D+ +P +++YN LI + + +D + F E
Sbjct: 421 TYNSLMDGYCLHSQMDEARKVF-DIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDE 479
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ L+PN T+ LI+G A +E+++ M + PD TY LL G+ G+
Sbjct: 480 MSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGH 539
Query: 312 LPRMEKIYELVK 323
L ++E +K
Sbjct: 540 LDEALALFEALK 551
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TY++L+ + L + +L ++ NI P +VT++ + VF + +V ++
Sbjct: 349 IVTYSSLIHGVCKSSLWKESSTLLNEMLSR-NIRPDVVTFSIWVDVFCKKGMVSEAQSII 407
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + L PNV TYN L+ GY + +++ +M PD +Y +L++GY S
Sbjct: 408 NLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKS 467
Query: 310 GNLPRMEKIYELVKH 324
+ +++++ + H
Sbjct: 468 ERIDEAKQLFDEMSH 482
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
++ L E +++++ + T++ + + G+ + QS+ +L E + P++VTYN+L+
Sbjct: 368 SSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSII-NLMIERGLRPNVVTYNSLM 426
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ +D F + + +P+V +YN LI GY + + ++++ M +
Sbjct: 427 DGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLT 486
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
P++ T+ L+ G +G +++++ + H
Sbjct: 487 PNSITHTTLISGLCQAGRPYAAKELFKKMGSH 518
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 83/206 (40%), Gaps = 30/206 (14%)
Query: 111 SCLFRRHSNGYAFVELMK--QLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR 168
+CL H G F L K +LG +P + +T G+ GR
Sbjct: 147 NCLCHLHLVGLGFSVLGKIFKLGFKPSI-----------------ITFNTLINGLCIEGR 189
Query: 169 INNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS--DKCQSLFRDLKK--EANISP 224
I V+ L + + T+ T+ ++ NGL K + +KK E + P
Sbjct: 190 I--VEAMEQLDYIMSRGYQPTVYTHTMIV-----NGLCKIGKTSAAIVWMKKMVELDCEP 242
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
+V+Y+ +I + LV+ F ++ +SP V TYN LI G + W + ++
Sbjct: 243 EVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILF 302
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ M + PD T+ +L+ G
Sbjct: 303 KEMLEWNMKPDVVTFSILVDALCKEG 328
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 22/188 (11%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G CL + ++M G P +VL++ GY K E
Sbjct: 428 GYCLHSQMDEARKVFDIMVNKGCAP----DVLSYNILIKGY----CKSE----------- 468
Query: 170 NNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+D A LF E ++K L T+ L+ G + LF+ + P ++T
Sbjct: 469 -RIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHG-CPPDLIT 526
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y+TL+S F + +D A F+ +K S L PN L+ G A +E++ +
Sbjct: 527 YSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLS 586
Query: 289 AGPVMPDT 296
+ PD
Sbjct: 587 IEELQPDV 594
>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
Length = 724
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 75/333 (22%), Positives = 140/333 (42%), Gaps = 22/333 (6%)
Query: 144 RRRQAGYGTPMTKEEYTKGIKFAGRINNVD--LAADLFAEAANKHLKTIGTY-NALLGAY 200
R R+ GY P Y+ I+ R N D + ++AE + ++ G N ++ +
Sbjct: 280 RMRRDGY--PSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGF 337
Query: 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN 260
+G ++ S F + + +SP T +I+ G + EA F+E+K+ L P
Sbjct: 338 AKSGDVNRAMS-FLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPR 396
Query: 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
YN L+ GY+ E I M+ PD +TY LL+ YA++G R E
Sbjct: 397 TRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAG---RWESARI 453
Query: 321 LVKHHVDGKEFPLIRAMICAYSK--CSVTDRIK-----KIEALMRLIPEKEYRPWLNVLL 373
++K E +R +S+ S DR K ++ MR R + NV +
Sbjct: 454 VLKE----MEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNV-M 508
Query: 374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
I + K +CL+ + D + ++ + + +K + + +G
Sbjct: 509 IDTFGKCNCLDHALATF-DRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESG 567
Query: 434 WRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466
C + Y+ + + Q R E+++++L +M++
Sbjct: 568 CSPCTTTYNIMINSFGEQERWEDVKTLLGKMQS 600
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 74/362 (20%), Positives = 136/362 (37%), Gaps = 66/362 (18%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDH--MEAAF 249
TYNAL+GA N +K +L ++++ S V Y+ +I R D ++ +
Sbjct: 257 TYNALIGACARNDDLEKALNLMSRMRRDGYPS-DFVNYSFIIQSLTRTNKSDSSMLQKIY 315
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
EI+ + + N +I G+ + + M++ + P T T + ++ ++
Sbjct: 316 AEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNA 375
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G E I+E +K +G P RA T +K E+++ + + P
Sbjct: 376 GRTEEAEAIFEELK---EGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDE 432
Query: 370 NV--LLIRVYAKED-------CLEEME---------------KSINDAFEHKTSVTTVRI 405
+ LLI YA L+EME S D + + S +R
Sbjct: 433 HTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLRE 492
Query: 406 MR------------CIVSSYFRCNAVD-KLANFVK------RAESAGWRL-----CRSLY 441
MR ++ ++ +CN +D LA F + + ++ W C+S +
Sbjct: 493 MRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGH 552
Query: 442 HSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501
H+K E + + M+ T+ IM ++ + V +LG M
Sbjct: 553 HNK------------AEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQS 600
Query: 502 NG 503
G
Sbjct: 601 QG 602
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
Y GLS++ + FR ++ + + PS++ N+LI+ FG + Q +K+++L P
Sbjct: 610 YTTLGLSEQAINAFRVMRADG-LKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKP 668
Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
+V TY L+ + + KV +Y+ M PD
Sbjct: 669 DVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPD 704
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 87/233 (37%), Gaps = 35/233 (15%)
Query: 119 NGYAFVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAA 176
N Y F ++ R + + +VL R G + Y I G+ N +D A
Sbjct: 466 NSYVFSRILASYRDRGKWQKSFQVL---REMRNSGVSPDRHFYNVMIDTFGKCNCLDHAL 522
Query: 177 DLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
F + ++ T+N L+ + +G +K + LF ++ E+ SP TYN +I+
Sbjct: 523 ATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQ-ESGCSPCTTTYNIMINS 581
Query: 236 FGR----------------------------LLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
FG L L + AF+ ++ L P+V N L
Sbjct: 582 FGEQERWEDVKTLLGKMQSQGLLANVVTYTTLGLSEQAINAFRVMRADGLKPSVLVLNSL 641
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
I + + + Q MK + PD TY L++ ++ +YE
Sbjct: 642 INAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIRVEKFDKVPAVYE 694
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 66/298 (22%), Positives = 116/298 (38%), Gaps = 28/298 (9%)
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y+ LI GR + + AF + L+P TYN LI K + M+
Sbjct: 228 YSILIHALGR---SEKLYEAFLLSQRQTLTP--LTYNALIGACARNDDLEKALNLMSRMR 282
Query: 289 AGPVMPDTNTYLLLLRGYAHS--GNLPRMEKIY---ELVKHHVDGKEFPLIRAMICAYSK 343
D Y +++ + + ++KIY E K +DG+ L+ +I ++K
Sbjct: 283 RDGYPSDFVNYSFIIQSLTRTNKSDSSMLQKIYAEIESDKIELDGQ---LLNDIIVGFAK 339
Query: 344 CSVTDRIKKIEALMR---LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSV 400
+R A+++ L P+ V +I EE E +I + + +
Sbjct: 340 SGDVNRAMSFLAMVQGNGLSPKTATL----VAVITALGNAGRTEEAE-AIFEELKEGGLM 394
Query: 401 TTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESV 460
R ++ Y + ++ + V E +G+ Y + YA+ R E V
Sbjct: 395 PRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIV 454
Query: 461 LKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG-------YDVPVNAF 511
LKEME + + F + +Y G+ +K QVL M +G Y+V ++ F
Sbjct: 455 LKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTF 512
>gi|403366299|gb|EJY82949.1| hypothetical protein OXYTRI_19434 [Oxytricha trifallax]
Length = 1420
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 125/279 (44%), Gaps = 19/279 (6%)
Query: 201 MYNGLSDKCQSLFRDLKKE---------ANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN L D C F D+ + +NI PS VTY LI +G +D+ F++
Sbjct: 703 LYNCLIDAC-VRFHDVNRAVAVFQEMQFSNIKPSSVTYGILIKAYGSANQLDNAFFVFKK 761
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+KD+ L PN TY LI + + E+++ MK V +T + L++G+A S
Sbjct: 762 MKDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETMKRDGVQLNTIIFTTLIKGFAKSFK 821
Query: 312 LPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
L + ++Y+++K +D K P ++I +C+ + +I M+ P +P
Sbjct: 822 LDQALEVYQIMK--MDDKIKPNNVTFNSLIDCCIRCNSIKKAMEIFEEMKQ-PISHTKPD 878
Query: 369 LNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L +I+ + +E +++ +ND ++ V + ++ + N ++
Sbjct: 879 LITYSTMIKGFCREKNIQQALIMLNDMEKNNIMADEV-LYNSLLDGCCKANEIEMALKVY 937
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
K E + Y + +Y QR + + VL+EM+
Sbjct: 938 KNMEILKIKPSNVTYSILIKIYGKQRNLPKALGVLEEMK 976
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 89/385 (23%), Positives = 161/385 (41%), Gaps = 33/385 (8%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTY 193
+LA E+ N + Q +T Y I R N ++ A L +E N + TY
Sbjct: 601 QLAFEMFNLMKMQCLKPNDVT---YNSLIDACVRCNRLNSAWQLLSEMQQNNIVPDNFTY 657
Query: 194 NALLGA-----YMYNGLSD-----KCQSLFRDLKK-EANISPSIVTYNTLISVFGRLLLV 242
+ L+ NG+S+ K +L +K+ + P + YN LI R V
Sbjct: 658 STLIKGIRAENQSQNGISNPMDLEKAFALLEQMKQSNGGVKPDEILYNCLIDACVRFHDV 717
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
+ A FQE++ SN+ P+ TY LI Y +A +++ MK ++P++ TY L
Sbjct: 718 NRAVAVFQEMQFSNIKPSSVTYGILIKAYGSANQLDNAFFVFKKMKDNCLIPNSVTYGCL 777
Query: 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI--RAMICAYSKCSVTDRIKKIEALMRLI 360
+ + + R +++E +K DG + I +I ++K D+ ++ +M++
Sbjct: 778 IDACVKNNQIERAMEVFETMKR--DGVQLNTIIFTTLIKGFAKSFKLDQALEVYQIMKM- 834
Query: 361 PEKEYRP---WLNVLL---IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF 414
+ + +P N L+ IR + + +E E+ K + T M + +
Sbjct: 835 -DDKIKPNNVTFNSLIDCCIRCNSIKKAMEIFEEMKQPISHTKPDLITYSTM---IKGFC 890
Query: 415 RCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKK 474
R + + + E LY+S + +E V K ME KI S
Sbjct: 891 REKNIQQALIMLNDMEKNNIMADEVLYNSLLDGCCKANEIEMALKVYKNMEILKIKPSNV 950
Query: 475 TFWIMYYAYATCGQRRKVNQVLGLM 499
T+ I+ Y G++R + + LG++
Sbjct: 951 TYSILIKIY---GKQRNLPKALGVL 972
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 8/158 (5%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
KE I P V YN++I + + + E+ ++P T+N LI + +
Sbjct: 393 KERGIKPDEVLYNSIIDGCSKNNQIAKAFLLYDEMLGEGVTPTTITFNSLIDCCVRSGNQ 452
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP----L 333
+ + + MK V PD TY L +G +EK + L + +F L
Sbjct: 453 DQAWRVLEQMKEKQVKPDNYTYSTLFKGIKSENQRQDLEKAFVLYNQLQNSNDFTPDEIL 512
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ A C DR +E +L P+ + P + V
Sbjct: 513 FNVLLDACINCKQLDRA--VELFKQLKPQSQ--PQIQV 546
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 11/144 (7%)
Query: 194 NALLGAYMYNGLSDKC---QSLFRDLKKEAN-----ISPSIVTYNTLISVFGRLLLVDHM 245
N + +YN L D C + LK N I PS VTY+ LI ++G+ +
Sbjct: 909 NIMADEVLYNSLLDGCCKANEIEMALKVYKNMEILKIKPSNVTYSILIKIYGKQRNLPKA 968
Query: 246 EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+E+K + P + Y L+ + + E+++ M+ + D TY ++ G
Sbjct: 969 LGVLEEMKKDGIRPGLIVYTCLLQTCIKSRQLKTAEQLFHDMRIQGIRGDQLTYQTMING 1028
Query: 306 YAHSGNLPRMEKIYELVKHHVDGK 329
+S + + I L+K D K
Sbjct: 1029 CLYS---QKFDSILILLKDASDSK 1049
>gi|224119538|ref|XP_002318099.1| predicted protein [Populus trichocarpa]
gi|222858772|gb|EEE96319.1| predicted protein [Populus trichocarpa]
Length = 426
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 4/162 (2%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
N ++ A L++E K LK T T+N L+ AY D + L +++ +A ++P+ +
Sbjct: 95 NQIEEAEGLYSEMQAKGLKPTSATFNILMDAYSRRMQPDIIEKLLLEMQ-DAGLAPNAKS 153
Query: 229 YNTLISVFGRLLLVDHMEA-AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
Y LIS +GR + M A AF +K + + P ++Y LI Y + K ++ M
Sbjct: 154 YTCLISAYGRQKKMSDMAADAFLRMKKAGIKPTSYSYTALIHAYSVSGWHEKAYITFENM 213
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL-VKHHVDG 328
+ + P TY LL + +G+ + I++L ++ V+G
Sbjct: 214 QREGIKPSIETYTTLLDAFRRAGDTKTLMDIWKLMMREKVEG 255
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 81/201 (40%), Gaps = 38/201 (18%)
Query: 151 GTPMTKEEYTKGIKFAGRINNV-DLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDK 208
G + YT I GR + D+AAD F +K T +Y AL+ AY +G +K
Sbjct: 146 GLAPNAKSYTCLISAYGRQKKMSDMAADAFLRMKKAGIKPTSYSYTALIHAYSVSGWHEK 205
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRL--------------------------LLV 242
F ++++E I PSI TY TL+ F R +L+
Sbjct: 206 AYITFENMQREG-IKPSIETYTTLLDAFRRAGDTKTLMDIWKLMMREKVEGTRVTFNILL 264
Query: 243 D-------HMEA--AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
D +MEA E K L P V TYN L+ Y K+ ++ + M +
Sbjct: 265 DGFAKQGHYMEARDVINEFKKFGLHPTVMTYNMLMNAYARGGQDSKLPQLLKEMATLKLE 324
Query: 294 PDTNTYLLLLRGYAHSGNLPR 314
PD+ TY ++ Y + R
Sbjct: 325 PDSITYTTMIYAYVRVRDFRR 345
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 66/318 (20%), Positives = 123/318 (38%), Gaps = 18/318 (5%)
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
AL+ ++ GL + + ++++ IS + + YNTL+ + + ++ E + E++
Sbjct: 50 GALIKSFCDEGLKKEALIIQTEMERRG-ISSNAIIYNTLMDSYSKSNQIEEAEGLYSEMQ 108
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
L P T+N L+ Y +E++ M+ + P+ +Y L+ Y +
Sbjct: 109 AKGLKPTSATFNILMDAYSRRMQPDIIEKLLLEMQDAGLAPNAKSYTCLISAYGRQKKMS 168
Query: 314 RM--EKIYELVKHHVDGKEFPLIRAMICAYS------KCSVTDRIKKIEALMRLIPEKEY 365
M + + K + + A+I AYS K +T + E + I + Y
Sbjct: 169 DMAADAFLRMKKAGIKPTSYSYT-ALIHAYSVSGWHEKAYITFENMQREGIKPSI--ETY 225
Query: 366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
L+ R L ++ K + T VT ++ A D + F
Sbjct: 226 TTLLDAF--RRAGDTKTLMDIWKLMMREKVEGTRVTFNILLDGFAKQGHYMEARDVINEF 283
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
K G Y+ M YA + ++ +LKEM K++ T+ M YAY
Sbjct: 284 KK----FGLHPTVMTYNMLMNAYARGGQDSKLPQLLKEMATLKLEPDSITYTTMIYAYVR 339
Query: 486 CGQRRKVNQVLGLMCKNG 503
R+ +M K+G
Sbjct: 340 VRDFRRAFFYHKMMVKSG 357
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N LL + G + + + + KK + P+++TYN L++ + R + +E
Sbjct: 259 TFNILLDGFAKQGHYMEARDVINEFKK-FGLHPTVMTYNMLMNAYARGGQDSKLPQLLKE 317
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
+ L P+ TY +I Y+ + + ++MM +PD +Y
Sbjct: 318 MATLKLEPDSITYTTMIYAYVRVRDFRRAFFYHKMMVKSGKVPDAKSY 365
>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 618
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 113/269 (42%), Gaps = 23/269 (8%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLAL---------------EVLNWRRRQAGYGTPM 154
G CL R S A V+ M ++ RP + E L R YG
Sbjct: 148 GFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEA 207
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLF 213
+ Y + + N LA DLF + + +K ++ Y+ ++ + +G D SLF
Sbjct: 208 NEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLF 267
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+++ + I +V Y+++I D +E+ N+ PNV T++ LI ++
Sbjct: 268 NEMEMKG-IKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVK 326
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
+ +E+Y M A + PDT TY L+ G+ L ++ +L+ G E +
Sbjct: 327 EGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSK--GCEPNI 384
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPE 362
+ I S C + K+++ MRL E
Sbjct: 385 VTYSILINSYC----KAKRVDNGMRLFCE 409
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 192 TYNALLGAYMY-NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TY++L+ + N L + Q L DL P+IVTY+ LI+ + + VD+ F
Sbjct: 351 TYSSLIDGFCKENRLGEANQML--DLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFC 408
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
EI L + TYN L+ G+ + +E++Q M + V P TY +LL G +G
Sbjct: 409 EISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNG 468
Query: 311 NLPRMEKIYE 320
L + +I+E
Sbjct: 469 ELQKALEIFE 478
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 6/170 (3%)
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL 212
+T +G +G++N +A +LF E ++ + ++ TY LL NG K +
Sbjct: 420 VTYNTLVQGFCQSGKLN---VAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEI 476
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
F ++K I I YN +I VD + F + + P+V TYN +I G
Sbjct: 477 FEKMQKSRMI-LGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLC 535
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY-AHSGNLPRMEKIYEL 321
+ + +++ MK P TY +L+R + SG + +E I E+
Sbjct: 536 KKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEEM 585
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 26/181 (14%)
Query: 172 VDLAADLFAEAANKHL--KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
VD LF E ++K L T+ TYN L+ + +G + + LF+++ + PS+VTY
Sbjct: 400 VDNGMRLFCEISSKGLVADTV-TYNTLVQGFCQSGKLNVAKELFQEMVSRG-VPPSVVTY 457
Query: 230 NTLISVFGRLLLVDHME-----AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
L+ L D+ E F++++ S + + YN +I G A ++
Sbjct: 458 GILLDG-----LCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLF 512
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC 344
+ V PD TY +++ G G+L + ++ +K DG CA S C
Sbjct: 513 CSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKE--DG----------CAPSDC 560
Query: 345 S 345
+
Sbjct: 561 T 561
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TY+ L+ +Y D LF ++ + ++ + VTYNTL+ F + ++ + F
Sbjct: 384 IVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADT-VTYNTLVQGFCQSGKLNVAKELF 442
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
QE+ + P+V TY L+ G K EI++ M+ ++ Y +++ G ++
Sbjct: 443 QEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNA 502
>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
Length = 716
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 66/377 (17%), Positives = 139/377 (36%), Gaps = 44/377 (11%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
G+ D + AE + Y ++ + G +K LF+++ + I P +
Sbjct: 200 GKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRG-IPPDL 258
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTY++++ + + EA +++ + + P+ +TYN LI GY + W + +++
Sbjct: 259 VTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKE 318
Query: 287 MKAGPVMPDTNT-----------------------------------YLLLLRGYAHSGN 311
M+ ++PD T Y ++L GYA G
Sbjct: 319 MRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGC 378
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR---LIPEKEYRPW 368
L M +++L+ + +I AY+ C + D+ I MR + P+
Sbjct: 379 LVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTT 438
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+ L R+ +D +E+ + I+ C++ + ++ K +
Sbjct: 439 VIAALCRIGKMDDAMEKFNQMIDQGVAPDKYA-----YHCLIQGFCTHGSLLKAKELILE 493
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+ G RL + S + R+ + +++ N + ++ Y G+
Sbjct: 494 IMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGK 553
Query: 489 RRKVNQVLGLMCKNGYD 505
K +V M G +
Sbjct: 554 MEKALRVFDAMVSAGIE 570
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Query: 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
GRI + DL +H + Y+ L+ Y G +K +F D A I P++
Sbjct: 517 GRIMDAQNIFDLTVNVG-QHPDAV-VYSMLMDGYCLVGKMEKALRVF-DAMVSAGIEPNV 573
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
V Y TL++ + ++ +D + F+E+ + P+ YN +I G A + +
Sbjct: 574 VVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHE 633
Query: 287 MKAGPVMPDTNTYLLLLRGY 306
M + + TY ++LRG+
Sbjct: 634 MTESGIAINKCTYNIVLRGF 653
Score = 41.6 bits (96), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS---VFGRLLLVDHMEAA 248
Y L+ Y G D+ SLFR++ ++ I PS + YN +I V GR + +
Sbjct: 575 VYGTLVNGYCKIGRIDEGLSLFREMLQKG-IKPSTILYNIIIDGLFVAGRTV---PAKVK 630
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
F E+ +S ++ N TYN ++ G+ + + +++ ++A V D T ++ G
Sbjct: 631 FHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAG 687
>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N +L A +G +K + R+++ I+P++V+YNTLI+ L+
Sbjct: 201 TFNLVLSALCKSGKLEKAVEVLREME-SVGITPNVVSYNTLIAGHCNKGLLSIATKLKNL 259
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + L PNV T+N LI G+ + + MK V P+T TY L+ GY GN
Sbjct: 260 MGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGN 319
Query: 312 LPRMEKIYE 320
K+YE
Sbjct: 320 SNMAGKVYE 328
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN L+ + GL L ++L + + P++VT+N+LI F + + F E
Sbjct: 236 SYNTLIAGHCNKGLLSIATKL-KNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSE 294
Query: 252 IKDSNLSPNVFTYNYLIAGY---MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+K N++PN TYN LI GY + M GKV E +MM+ G V D TY L+ G
Sbjct: 295 MKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYE--EMMRNG-VKADILTYNALILGLCK 351
Query: 309 SG 310
G
Sbjct: 352 EG 353
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N+L+ + G + F ++K N++P+ VTYNTLI+ +G++ + ++E
Sbjct: 271 TFNSLIHGFCKEGKLHEANRFFSEMKV-MNVTPNTVTYNTLINGYGQVGNSNMAGKVYEE 329
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + + ++ TYN LI G K + + + ++P+ +TY L+ G N
Sbjct: 330 MMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKN 389
Query: 312 LPRMEKIYE 320
R ++Y+
Sbjct: 390 SDRAFQLYK 398
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A D+F+ + L T+ + NA L + + D + +R++++ ISP+ T+N ++
Sbjct: 148 ATDVFSRMKDYGFLPTVESCNAYLSSLLDFHRVDIALTFYREMRR-CRISPNSYTFNLVL 206
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
S + ++ +E++ ++PNV +YN LIAG+ + ++ +M +
Sbjct: 207 SALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLE 266
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
P+ T+ L+ G+ G L + + +K
Sbjct: 267 PNVVTFNSLIHGFCKEGKLHEANRFFSEMK 296
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF-- 249
TYN L+ Y G S+ ++ ++ + + I+TYN LI G +AAF
Sbjct: 306 TYNTLINGYGQVGNSNMAGKVYEEMMRNG-VKADILTYNALI--LGLCKEGKTKKAAFLV 362
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
+E+ NL PN TY+ LI+G + ++Y+ M P+ T+ +L +
Sbjct: 363 KELDKENLVPNASTYSALISGQCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFV 420
>gi|255660910|gb|ACU25624.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 484
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+ L+ + +G + F D+K ISP +VTYNT+I+ + R+ + E F E
Sbjct: 152 TFXVLIWGFFLSGKVETANRFFEDMKSR-EISPDVVTYNTMINGYYRVKKXEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V TY LI GY++ + + MK + P+ Y LL G N
Sbjct: 211 MKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAIXYSTLLPGLC---N 267
Query: 312 LPRMEKIYELVKHHVD 327
+M + ++K +D
Sbjct: 268 AEKMSEARSILKEMMD 283
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 6/153 (3%)
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G +G+ V+ A F + ++ + + TYN ++ Y ++ + F ++K
Sbjct: 159 GFFLSGK---VETANRFFEDMKSREISPDVVTYNTMINGYYRVKKXEEAEKYFVEMKGR- 214
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
NI P++VTY TLI + + VD +E+K + PN Y+ L+ G A +
Sbjct: 215 NIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAIXYSTLLPGLCNAEKMSEA 274
Query: 281 EEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNL 312
I + M + P D + ++ L+ SGNL
Sbjct: 275 RSILKEMMDKYLAPTDNSIFMRLITSQCKSGNL 307
>gi|242073288|ref|XP_002446580.1| hypothetical protein SORBIDRAFT_06g018360 [Sorghum bicolor]
gi|241937763|gb|EES10908.1| hypothetical protein SORBIDRAFT_06g018360 [Sorghum bicolor]
Length = 415
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 76/137 (55%), Gaps = 4/137 (2%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT 192
R + ALEV +W + + + +++ +Y I ++ A D F E K++
Sbjct: 108 RYKHALEVADWMKTH--HESDLSESDYGMRIDLITKVFGASAAEDFF-EKLPPGAKSLEA 164
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y ALL +Y + ++DK + LF +K +AN+S + YN +++++ + +D +E +E+
Sbjct: 165 YTALLHSYGRSKMTDKAERLFERMK-DANLSMDALVYNEMMTLYISVGELDKVEIIAEEL 223
Query: 253 KDSNLSPNVFTYNYLIA 269
K N+SP++FTYN ++
Sbjct: 224 KRQNVSPDLFTYNLRVS 240
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 94/211 (44%), Gaps = 11/211 (5%)
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
+ S+ Y L+ +GR + D E F+ +KD+NLS + YN ++ Y++ KVE
Sbjct: 159 AKSLEAYTALLHSYGRSKMTDKAERLFERMKDANLSMDALVYNEMMTLYISVGELDKVEI 218
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE-FPLIRAMICAY 341
I + +K V PD TY L + A S +L + I + + + KE + L R + Y
Sbjct: 219 IAEELKRQNVSPDLFTYNLRVSAAAASMDLEGFKGILDEMSKDPNSKEGWTLYRNLASVY 278
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLN----VLLIRVYAKEDCLEEMEKSINDAFEHK 397
S + +L+ + R W+ V+L ++ ++++ KS+ +
Sbjct: 279 VDASQL--VGSGNSLVEAEAKISQREWITYDFLVILHAGLGNQERIKDIWKSMVMTSQRM 336
Query: 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
TS + C++SSY C + V +
Sbjct: 337 TSRNYI----CVISSYLMCGQLKDAGEIVDQ 363
>gi|410110061|gb|AFV61110.1| pentatricopeptide repeat-containing protein 123, partial
[Acantholippia seriphioides]
Length = 416
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 135 ALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 193
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN +I Y K + Q M++ +
Sbjct: 194 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIE 253
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 254 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 313
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/296 (18%), Positives = 118/296 (39%), Gaps = 3/296 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 13 TYSTLITHFGKEGLFDAALSWLQKMEQD-RVPGDLVLYSNLIELSRKLCDYSKAISIFSR 71
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S +P++ YN +I + A ++ + + MK VMP+T +Y LL Y +
Sbjct: 72 LKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYSTLLTMYVENKK 131
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 132 FLEALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 191
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
LL RVY + E + + K V ++ Y + +K N ++ +S
Sbjct: 192 LL-RVYGDAELFGE-AIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQS 249
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
G Y + + ++ +++ + +++ + ++ + F M AY G
Sbjct: 250 RGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAG 305
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/262 (19%), Positives = 110/262 (41%), Gaps = 11/262 (4%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P +V YN +I+VFG+ L + E+K S + PN +Y+ L
Sbjct: 64 KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXSGVMPNTASYSTL 122
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + ++ M+ + D T +++ Y G +K++ ++
Sbjct: 123 LTMYVENKKFLEALSVFSEMREVKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 182
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCL 383
++ Y + + L RL+ K NV+ +I +Y K
Sbjct: 183 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMIMIYGKTLEH 237
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
E+ I + ++ I+S + + +D+ A ++ S+G + + L+ +
Sbjct: 238 EKANNLIQEMQSRGIEPNSI-TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 296
Query: 444 KMVMYASQRRVEEMESVLKEME 465
+V Y V + +L E++
Sbjct: 297 MIVAYERAGLVAHAKRLLHELK 318
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 109/235 (46%), Gaps = 34/235 (14%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 199 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG-IEPN 255
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + + +I Y A + + +
Sbjct: 256 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLH 315
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P DT ++L A +G R+E+ + + +D K+ + MI
Sbjct: 316 ELKRPDNIPRDTAIHIL-----AGAG---RIEEATYVFRQAIDAGEVKDITVFERMIHLL 367
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAF 394
SK + ++ MR + Y P +V L++ Y K L E +K+ ND +
Sbjct: 368 SKYKKYANVVEVFDKMRGLG---YFPDSDVIALVLNAYGK---LHEFDKA-NDVY 415
>gi|255661136|gb|ACU25737.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 426
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ ++ G L R +++ ++ + L + MI AY K + K++
Sbjct: 252 PNSITYSTIISIWSKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYEKAGLVAHAKRL 311
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 116/269 (43%), Gaps = 25/269 (9%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P IV YN +I+VFG+ L + E++ + ++PN +Y+ L
Sbjct: 62 KAISIFSRLKR-SGFTPDIVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + ++ M+ + D T +++ Y G +K++ ++
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAK---- 379
++ Y + + L RL+ K NV+ ++ +Y K
Sbjct: 181 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMMMIYGKTLEH 235
Query: 380 ---EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL 436
+ ++EM+ N E S+T I+S + + +D+ A ++ S+G +
Sbjct: 236 EKANNLIQEMQ---NRGIE-PNSIT----YSTIISIWSKVGKLDRAAMLFQKLRSSGVDI 287
Query: 437 CRSLYHSKMVMYASQRRVEEMESVLKEME 465
+ LY + +V Y V + +L E++
Sbjct: 288 DQVLYQTMIVAYEKAGLVAHAKRLLHELK 316
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 109/248 (43%), Gaps = 42/248 (16%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 197 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG-IEPN 253
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++ ++ +D FQ+++ S + + Y +I Y A + + +
Sbjct: 254 SITYSTIISIWSKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYEKAGLVAHAKRLLH 313
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P D ++L+ G R+E+ + + +D K+ + MI +
Sbjct: 314 ELKRPDNIPRDIAIHILVGAG--------RIEEATWVFRQAIDAGEVKDITVFERMIHLF 365
Query: 342 SK----CSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFE 395
SK +V + K+ L Y P NV L++ Y K L E +K+ ND +
Sbjct: 366 SKYKKYGNVVEVFDKMCGL-------GYFPDSNVIALILNAYGK---LHEFDKA-NDVYM 414
Query: 396 HKTSVTTV 403
V V
Sbjct: 415 EMQEVGCV 422
>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
Length = 836
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 4/163 (2%)
Query: 159 YTKGIKFAG--RINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRD 215
YT G+ G + N V+ +L E +K L+ YN+L+ AY NG + L RD
Sbjct: 607 YTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRL-RD 665
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
K + S TY++L+ + LVD + E++ L PNV Y +I GY
Sbjct: 666 DMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLG 725
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
KV + Q M + + P+ TY +++ G+ G K+
Sbjct: 726 QMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKL 768
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
L + TY++L+ GL D + L +++KE + P++V Y T+I + +L ++ +
Sbjct: 673 LLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEG-LLPNVVCYTTIIGGYSKLGQMNKVN 731
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
QE+ N+ PN FTY +I G+ + ++ M ++PD TY G
Sbjct: 732 IVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGL 791
Query: 307 AHSGNLPRMEKI 318
G + K+
Sbjct: 792 CKEGKVEEAFKV 803
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ +G D+ + KE +SPS++TY+ I+ +L +D +E
Sbjct: 293 TYNNIIHGLCKSGRLDEAYRFKEKMVKE-KVSPSLITYSVFINGLIKLEKIDEANCVLKE 351
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + PN YN LI GY + +I M + + P++ T L++G+ S
Sbjct: 352 MSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQ 411
Query: 312 LPRMEKIYE 320
+ + E + E
Sbjct: 412 IGQAENVLE 420
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 8/159 (5%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKC 209
G ++ Y+ + I VD A L E + L + Y ++G Y G +K
Sbjct: 671 GVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKV 730
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+ +++ NI P+ TY +I F +L E+ + + P+ TYN
Sbjct: 731 NIVLQEMSSH-NIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTN 789
Query: 270 GYMTAWMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRG 305
G GKVEE +++ M +G V D TY L+ G
Sbjct: 790 GLCKE---GKVEEAFKVCDEMSSGAVCLDEITYTTLIDG 825
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ G + L ++ K+ I P I T+N L+ +D + E
Sbjct: 538 TYNTLISGCCKEGKVKEGFELKEEMVKKG-IQPDIYTFNLLLHGLCNADKIDEASRLWHE 596
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
K + PNV+TY +I GY A + E + + + + ++ Y L+R Y +GN
Sbjct: 597 CKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGN 656
Query: 312 L 312
+
Sbjct: 657 M 657
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 72/332 (21%), Positives = 129/332 (38%), Gaps = 55/332 (16%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I T NAL+ G + L RD+ + + I TYNTLIS + V
Sbjct: 501 IVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRI-TYNTLISGCCKEGKVKEGFELK 559
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E+ + P+++T+N L+ G A + ++ K +P+ TY +++ GY +
Sbjct: 560 EEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKA 619
Query: 310 GNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ E + ELV KK+E + Y
Sbjct: 620 NKVEEGENLLNELVS---------------------------KKLE-----LNSVVYNS- 646
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRI-MRCIVSS---YFRCNA--VDKL 422
LIR Y + ++N AF + + + + + C S + CN VD
Sbjct: 647 ----LIRAYC-------INGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDA 695
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482
+ + G Y + + Y+ ++ ++ VL+EM ++ I +K T+ IM
Sbjct: 696 KHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDG 755
Query: 483 YATCGQRRKVNQVLGLMCKNGY---DVPVNAF 511
+ G+ ++ ++L M + G V NAF
Sbjct: 756 FCKLGKTKEAAKLLNEMTEKGILPDAVTYNAF 787
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
++ ++ A+ D LF ++K ++P++VTYN +I + +D +++
Sbjct: 259 FSTMINAFCKGHREDDAIGLFSKMEK-LGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKM 317
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+SP++ TY+ I G + + + + M +P+ Y L+ GY GN+
Sbjct: 318 VKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNI 377
Query: 313 PRMEKI 318
KI
Sbjct: 378 SEALKI 383
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 174 LAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
AAD+F+ A K L ++ T LL + + K ++ D I P + ++T+
Sbjct: 204 FAADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVY-DFICLGGIIPDVHLFSTM 262
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM---MKA 289
I+ F + D F +++ ++PNV TYN +I G + G+++E Y+ M
Sbjct: 263 INAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKS---GRLDEAYRFKEKMVK 319
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
V P TY + + G L ++EKI E
Sbjct: 320 EKVSPSLITYSVFING------LIKLEKIDE 344
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 101/228 (44%), Gaps = 24/228 (10%)
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKC 209
Y +T G+ + RIN+ L D A + + TY+ ++ ++ + D
Sbjct: 507 YPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAG--VMPDVVTYSIVIHSFCKDNNLD-- 562
Query: 210 QSLFRDLK--KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
S F+ L+ KEA P +VTY+ LI+ + VD FQE+ +PN+ TYN L
Sbjct: 563 -SAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTL 621
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
I G + E+ ++M+ PD+ TY L+ G N R+E+ + +++ D
Sbjct: 622 IDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLC---NASRLEEAWRVLREMKD 678
Query: 328 GKEFP-------LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
P L+RA+ T+ ++ +E L++ + E W
Sbjct: 679 KGCLPDRMTYGTLLRAL-------QKTNNLELVEQLLKEMEATEEGQW 719
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 113/263 (42%), Gaps = 27/263 (10%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT 192
RP+ AL+V +R + T G+ AG I A +L E +
Sbjct: 859 RPKDALQV--YRNKLCCSPNMFTFTILIHGLCRAGDIGT---AYELLKEMPRHGVPQ--- 910
Query: 193 YNALLGAYMYNGLS-----DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
N +L + GL D LF+++++ + P + TY+T++ + VD
Sbjct: 911 -NVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACR 969
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
+++ SPNV TY+ L+ G A + + Q M P+ TY ++ G+
Sbjct: 970 LVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHC 1029
Query: 308 HSGNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCS-VTDRIKKIEALMRLIPEK 363
G R+++ Y L++ VDG P + ++ A+ KC D I +E ++ EK
Sbjct: 1030 KLG---RIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMV----EK 1082
Query: 364 EYRPWLNVL--LIRVYAKEDCLE 384
Y P L L+ ++ K+D +E
Sbjct: 1083 GYVPNLFTYNSLLDMFCKKDEVE 1105
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 1/152 (0%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
VD+A +LF + TYN+L+ + D+ + L R++ ++ SP I+TYN
Sbjct: 1174 VDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYN 1233
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
T+I + VD F ++ L+P+ TY+ +I+ + + ++M
Sbjct: 1234 TVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKN 1293
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
P TY L+ G+ +GNL + +I +L+
Sbjct: 1294 GFDPGAITYGTLIDGFCKTGNLDKALEILQLL 1325
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 99/232 (42%), Gaps = 19/232 (8%)
Query: 143 WRRRQAGY--GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGA 199
+R R G G +T G AG+I A +LF E K LK G + ++L
Sbjct: 149 FRSRIEGQWGGDTVTYSTLISGFIRAGKILP---AYELFDEMNRKGLKAHAGVHKSILRG 205
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
G FR++ K P VTYNT+I+ + +D +E+ D+ +P
Sbjct: 206 LCDAGQCSDAVLHFREMSK--TCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAP 263
Query: 260 NVFTYNYLIAGYMTAWMWGKVEE----IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
NVF+YN ++ G+ A +VE + QM+ G PD +Y ++ G +
Sbjct: 264 NVFSYNTVLHGFCKA---NRVENALWLLEQMVTRG-CPPDVVSYTTVINGLCKLDQVDEA 319
Query: 316 EKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
++ + + G + +I C V D +E L+R + E+ YRP
Sbjct: 320 CRVMDKMIQR--GCQPNVITYGTLVDGFCRVGDLDGAVE-LVRKMTERGYRP 368
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
N P IVT+NT+I + VD F I++S +PN+ TYN L+ G + + +
Sbjct: 1153 NCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQA 1212
Query: 281 EEIY-QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
E + +M + PD TY ++ G S + R K++
Sbjct: 1213 EYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLF 1252
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 4/155 (2%)
Query: 203 NGLS--DKCQSLFRDLKK--EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS 258
NGL D+ R + K + P+++TY TL+ F R+ +D +++ +
Sbjct: 308 NGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYR 367
Query: 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
PN TYN ++ + + ++ QMM PD Y ++ G+ +G L +
Sbjct: 368 PNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDL 427
Query: 319 YELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
E + + + +I A K + D +++
Sbjct: 428 LEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQEL 462
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN ++ + D+ LF + + ++P VTY+ +IS + +D
Sbjct: 1229 IITYNTVIDGLCKSKRVDRAYKLFLQMLSDG-LAPDDVTYSIVISSLCKWRFMDEANNVL 1287
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + + P TY LI G+ K EI Q++ + PD T+ + + +
Sbjct: 1288 ELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKR 1347
Query: 310 GNLPRMEKIYE 320
G L + ++ E
Sbjct: 1348 GRLRQAGELLE 1358
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+LL + ++ L + ++ + P++V+YNT+I+ + V ++
Sbjct: 1090 TYNSLLDMFCKKDEVERACQLLSSMIQKGCV-PNVVSYNTVIAGLCKATKVHEGVLLLEQ 1148
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +N P++ T+N +I + E++ +++ P+ TY L+ G S
Sbjct: 1149 MLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRR 1208
Query: 312 LPRME 316
+ E
Sbjct: 1209 FDQAE 1213
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 71/179 (39%), Gaps = 4/179 (2%)
Query: 146 RQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA-NKHLKTIGTYNALLGAYMYNG 204
R+ P Y I + + +D A L E N + +YN +L +
Sbjct: 220 REMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKAN 279
Query: 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY 264
+ L + P +V+Y T+I+ +L VD ++ PNV TY
Sbjct: 280 RVENALWLLEQMVTRG-CPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITY 338
Query: 265 NYLIAGYM-TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
L+ G+ + G VE + +M + G P+ TY ++ + ++ R ++ +++
Sbjct: 339 GTLVDGFCRVGDLDGAVELVRKMTERG-YRPNAITYNNIMHVFCRRNDMERAHQVLQMM 396
>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 1/197 (0%)
Query: 127 MKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH 186
M L + LA E ++ R YG K ++ I + A F ++
Sbjct: 152 MIDLAGKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRF 211
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
+ Y +L+ + G + + +F ++K A I P++ TY+ +I R +
Sbjct: 212 EPDVVVYTSLVHGWCRAGNISEAERVFGEMKM-AGIQPNVYTYSIVIDALCRSGQITRAH 270
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
F E+ D PN T+N L+ ++ A KV ++Y MK PD TY L+ +
Sbjct: 271 DVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESH 330
Query: 307 AHSGNLPRMEKIYELVK 323
NL KI VK
Sbjct: 331 CRDDNLEEAVKILNSVK 347
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/266 (18%), Positives = 106/266 (39%), Gaps = 6/266 (2%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P + ++ +IS + ++ F +KD P+V Y L+ G+ A + E +
Sbjct: 179 PDKIAFSVVISSLSKKRRAIEAQSFFDSLKD-RFEPDVVVYTSLVHGWCRAGNISEAERV 237
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYS 342
+ MK + P+ TY +++ SG + R ++ E++ D ++ +
Sbjct: 238 FGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITF-NNLMRVHV 296
Query: 343 KCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTT 402
K T+++ ++ M+ + N LI + ++D LEE K +N K
Sbjct: 297 KAGRTEKVLQVYNQMKRLGCPPDAITYN-FLIESHCRDDNLEEAVKILNSV--KKGCNLN 353
Query: 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
I + V+ + + R Y+ M M+A ++ + + + K
Sbjct: 354 ASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRK 413
Query: 463 EMENYKIDCSKKTFWIMYYAYATCGQ 488
EM+ +I+ + T+ ++ + G
Sbjct: 414 EMDENEIEPNANTYRVLISTFCGIGH 439
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ ++ + ++ + +KK N++ S ++N + +L V+ F +
Sbjct: 322 TYNFLIESHCRDDNLEEAVKILNSVKKGCNLNAS--SFNPIFGCISKLGDVNSAHRMFAK 379
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+KD PN TYN L+ + V ++ + M + P+ NTY +L+ + G+
Sbjct: 380 MKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGH 439
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 8/220 (3%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
+D A +L E K L+ + YN+++ G ++ L ++++ A I P +TY
Sbjct: 484 LDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEV-AGIDPDAITYT 542
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
T+I + RL +D QE+ D L P V T+N L+ G+ M + + M
Sbjct: 543 TVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEK 602
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI 350
++PD TY L++ + ++ KIY+ +++ + +I + K +
Sbjct: 603 GIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKAR---NL 659
Query: 351 KKIEALMRLIPEKEYRPWL---NVLLIRVYAKEDCLEEME 387
K+ L + + EK Y P + N L+ R Y K E E
Sbjct: 660 KEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARE 699
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I+ G+ V +LF E ++ LK TY L+ Y G SL ++
Sbjct: 401 YTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMV 460
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ ++P+IVTY LI + +D E++ L NV YN ++ G A
Sbjct: 461 -QMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKA--- 516
Query: 278 GKVEEIYQMMK---AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
G +E+ ++MK + PD TY ++ Y G++ + K+ +
Sbjct: 517 GNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQ 562
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 122/312 (39%), Gaps = 38/312 (12%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+++ G S + + + R++ + I P V Y TLI F +L V F E
Sbjct: 330 TYNSIILLLCKIGKSFEAEKVLREMMSQ-KIIPDNVVYTTLIHGFFKLGHVRTANKWFDE 388
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +SP+ TY LI G+ + + ++ M + + PD TY L+ Y +G
Sbjct: 389 MLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAG- 447
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
E+V F L M+ + +T I AL+ + + N
Sbjct: 448 --------EMV------NAFSLHNEMV----QMGMTPNIVTYGALIDGLCKHGELDTANE 489
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
L L+EM K K V I +V+ + +++ +K E
Sbjct: 490 L----------LDEMRK--------KGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEV 531
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRK 491
AG Y + + Y +++ +L+EM + + + TF ++ + G
Sbjct: 532 AGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLED 591
Query: 492 VNQVLGLMCKNG 503
+++LG M + G
Sbjct: 592 GDRLLGWMLEKG 603
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 67/355 (18%), Positives = 139/355 (39%), Gaps = 17/355 (4%)
Query: 165 FAGRINN----VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
F RI N +++A +F E T +YN ++ + G + L + +
Sbjct: 231 FLSRIANNSEGIEMAIKVFCEYGISWNTT--SYNIIIYSLCRLGKVKEAHRLLMQMDFRS 288
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
+ +P +V+Y+T+I + L + +++ L PN +TYN +I +
Sbjct: 289 S-TPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEA 347
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340
E++ + M + ++PD Y L+ G+ G++ K ++ + ++ +I
Sbjct: 348 EKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQG 407
Query: 341 YSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEK--SINDAFEH 396
+ + ++ + + L + + +P LI VY K EM S+++
Sbjct: 408 FGQGG---KVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAG---EMVNAFSLHNEMVQ 461
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
+ ++ + +D + G +L +Y+S + +E+
Sbjct: 462 MGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQ 521
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
++KEME ID T+ + AY G K +++L M G V F
Sbjct: 522 AIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTF 576
>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62670, mitochondrial; Flags: Precursor
gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
Length = 630
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A L+ E + + +I TY++L+ + + D+ + +F + + P +VTYNTLI
Sbjct: 345 AEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMF-EFMVSKHCFPDVVTYNTLI 403
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
F + V+ F+E+ L N TYN LI G A +EI++ M + V
Sbjct: 404 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVP 463
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
P+ TY LL G +G L + ++E ++
Sbjct: 464 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 493
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 8/193 (4%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIG 191
R +EV ++ G +T +G+ AG + D+A ++F E + + I
Sbjct: 411 RVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG---DCDMAQEIFKEMVSDGVPPNIM 467
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN LL NG +K +F L++ + + P+I TYN +I + V+ F
Sbjct: 468 TYNTLLDGLCKNGKLEKAMVVFEYLQR-SKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCN 526
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + P+V YN +I+G+ + + +++ MK +P++ Y L+R G+
Sbjct: 527 LSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGD 586
Query: 312 LPRMEKIYELVKH 324
E EL+K
Sbjct: 587 ---REASAELIKE 596
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 119/300 (39%), Gaps = 9/300 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ G +D +L ++ + + P ++ YNT+I + +D F+E
Sbjct: 223 TYGVVVNGLCKRGDTDLAFNLLNKME-QGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKE 281
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + PNV TY+ LI+ W + M + PD T+ L+ + G
Sbjct: 282 METKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 341
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
L EK+Y E+VK +D P I + + DR+ + + + + K P +
Sbjct: 342 LVEAEKLYDEMVKRSID----PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVV 397
Query: 371 V--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
LI+ + K +EE + + + TV ++ F+ D K
Sbjct: 398 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV-TYNILIQGLFQAGDCDMAQEIFKE 456
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
S G Y++ + ++E+ V + ++ K++ + T+ IM G+
Sbjct: 457 MVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK 516
>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 3/139 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ + +G++ + +F ++ A I P +V Y++L+ R + F+E
Sbjct: 148 TYGMIIDSLCKDGMTTEALDMFSEMIG-AGILPDVVVYSSLMDGLCRFGRLKEALEFFKE 206
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ +S +V+TYN LI G A +W +V +M PD T+ +L+ G G
Sbjct: 207 MEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGK 266
Query: 312 LPRMEKIYELVKHHVDGKE 330
+ ++I EL+ H GKE
Sbjct: 267 VGEAQQILELMHHK--GKE 283
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 12/206 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA--- 248
T+ L+ G + Q + +L P I+TYNTL++ L LV +E A
Sbjct: 253 TFTILIDGLCKEGKVGEAQQIL-ELMHHKGKEPDILTYNTLMN---GLCLVGQLEDATKL 308
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F+ + D + NVF+YN LI GY + +++ M+ + P T TY L+
Sbjct: 309 FESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQ 368
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
SG + +K++ V+ G+ L + C +++ L + I + E++P
Sbjct: 369 SGRVRTAQKLF--VEMQTCGQFLKLSTYCVLLDGLCK-NGHLEEAIDLFQSIKKTEHKPN 425
Query: 369 LNV--LLIRVYAKEDCLEEMEKSIND 392
+ V +L+ + LEE K ++
Sbjct: 426 IEVFSILLDGMCRAGKLEEAWKQFDE 451
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 13/160 (8%)
Query: 166 AGRINNVDLAADLFAE--AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANIS 223
+GR+ A LF E + LK + TY LL NG ++ LF+ +KK +
Sbjct: 369 SGRVRT---AQKLFVEMQTCGQFLK-LSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEH-K 423
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P+I ++ L+ R ++ F EI + L P+ YN LI G M + ++
Sbjct: 424 PNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKL 483
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
M+ +PD+ T+ ++++ NL + +I+E ++
Sbjct: 484 LWQMEEKGCLPDSITFNVIIQ------NLLKENEIHEAIQ 517
>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62930, chloroplastic; Flags: Precursor
gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TY++L+ + + D+ + +F +L + P++VTYNTLI F + V+ F
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMF-ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF 418
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E+ L N TYN LI G A ++I++ M + V PD TY +LL G
Sbjct: 419 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 478
Query: 310 GNLPRMEKIYELVK 323
G L + ++E ++
Sbjct: 479 GKLEKALVVFEYLQ 492
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 82/155 (52%), Gaps = 4/155 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T++AL+ A++ G + + L+ ++ K + I P I TY++LI+ F +D + F+
Sbjct: 327 TFSALIDAFVKEGKLVEAEKLYDEMIKRS-IDPDIFTYSSLINGFCMHDRLDEAKHMFEL 385
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + PNV TYN LI G+ A + E+++ M ++ +T TY L++G +G+
Sbjct: 386 MISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD 445
Query: 312 LPRMEKIY-ELVKHHV--DGKEFPLIRAMICAYSK 343
+KI+ ++V V D + ++ +C Y K
Sbjct: 446 CDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 480
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 12/205 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y IK + V+ +LF E + + L TYN L+ G D Q +F+ +
Sbjct: 398 YNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMV 457
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + P I+TY+ L+ + ++ F+ ++ S + P+++TYN +I G A
Sbjct: 458 SDG-VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKA--- 513
Query: 278 GKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV----DGKE 330
GKVE +++ + V P+ Y ++ G+ G + ++ +K G
Sbjct: 514 GKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTY 573
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEA 355
LIRA + K + + IK++ +
Sbjct: 574 NTLIRARLRDGDKAASAELIKEMRS 598
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 12/199 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ G D SL + ++K I +V Y T+I V+ F E
Sbjct: 222 TYGTVVNGLCKRGDIDLALSLLKKMEK-GKIEADVVIYTTIIDALCNYKNVNDALNLFTE 280
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + + PNV TYN LI W + M + P+ T+ L+ + G
Sbjct: 281 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 340
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
L EK+Y E++K +D F ++I + + DR+ + + + L+ K+ P N
Sbjct: 341 LVEAEKLYDEMIKRSIDPDIFTY-SSLINGF---CMHDRLDEAKHMFELMISKDCFP--N 394
Query: 371 VL----LIRVYAKEDCLEE 385
V+ LI+ + K +EE
Sbjct: 395 VVTYNTLIKGFCKAKRVEE 413
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 5/180 (2%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIG 191
R +E+ ++ G +T +G+ AG + D+A +F + + + I
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAG---DCDMAQKIFKKMVSDGVPPDII 466
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ LL G +K +F L+K + + P I TYN +I + V+ F
Sbjct: 467 TYSILLDGLCKYGKLEKALVVFEYLQK-SKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCS 525
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + PNV Y +I+G+ + + + +++ MK +P++ TY L+R G+
Sbjct: 526 LSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGD 585
>gi|410110125|gb|AFV61142.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
micromera]
Length = 434
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 1/162 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T N ++ Y G++ + LF ++K I P++V+YNTL+ V+G L F+
Sbjct: 157 TCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLLRVYGDAELFGEAIHLFRL 215
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ N+ NV TYN +I Y K + Q M++ + P++ TY ++ + G
Sbjct: 216 MQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKXGK 275
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
L R +++ ++ + L + MI AY + + K++
Sbjct: 276 LDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 317
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/296 (18%), Positives = 117/296 (39%), Gaps = 3/296 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + + + F
Sbjct: 17 TYSTLITHFGKEGLFDAALSWLQKMEQD-QVPGDLVLYSNLIELSRKXCDYSKAISIFSR 75
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S +P++ YN +I + A ++ + + MK VMP+T +Y LL Y +
Sbjct: 76 LKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYXENKK 135
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 136 FLEALSVFSEMREIKCXLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 195
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
LL RVY + E + + K V ++ Y + +K N ++ +S
Sbjct: 196 LL-RVYGDAELFGE-AIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQS 253
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
G Y + + ++ +++ + +++ + ++ + F M AY G
Sbjct: 254 RGIEPNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAG 309
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 109/244 (44%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 203 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG-IEPN 259
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G+ +D FQ+++ S + + + +I Y A + + +
Sbjct: 260 SITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLH 319
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P DT ++L G R+E+ + + +D K+ + MI
Sbjct: 320 ELKRPDNIPRDTAIHILAGAG--------RIEEATYVFRQAIDAGEVKDITVFERMIHLL 371
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTS 399
SK + ++ MR + Y P NV+ ++ Y K L+E +K+ ND +
Sbjct: 372 SKYKKYSNVIEVFDKMRGLG---YFPDSNVIAVVLNAYGK---LQEFDKA-NDVYMEMQE 424
Query: 400 VTTV 403
V V
Sbjct: 425 VGCV 428
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 108/262 (41%), Gaps = 11/262 (4%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P +V YN +I+VFG+ L + E+K + + PN +Y+ L
Sbjct: 68 KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 126
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y + + ++ M+ D T +++ Y G +K++ ++
Sbjct: 127 LTMYXENKKFLEALSVFSEMREIKCXLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 186
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCL 383
++ Y + + L RL+ K NV+ +I +Y K
Sbjct: 187 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMIMIYGKTLEH 241
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
E+ I + ++ I+S + + +D+ A ++ S+G + + L+ +
Sbjct: 242 EKANNLIQEMQSRGIEPNSI-TYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQT 300
Query: 444 KMVMYASQRRVEEMESVLKEME 465
+V Y V + +L E++
Sbjct: 301 MIVAYERAGLVAHAKRLLHELK 322
>gi|357480587|ref|XP_003610579.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511634|gb|AES92776.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 706
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 117/257 (45%), Gaps = 8/257 (3%)
Query: 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALL 197
+ + W + +G Y+ I G+ ++D+A +L+ A + + T++ L+
Sbjct: 234 KAVEWFEKMPLFGCEPDDVTYSVMIDSYGKAGDIDMALNLYDRARTEKWRIEPATFSTLI 293
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
Y G D C +++ ++K + P++V YNTL+ GR ++E+ ++++
Sbjct: 294 KMYGVAGNYDGCLNVYEEMKA-LGVKPNLVVYNTLLDAMGRAKRPWQARTIYKEMINNDI 352
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
PN TY L+ Y A +Y+ M+ + +T+ Y LL A G +
Sbjct: 353 LPNRATYASLLHAYGRARFCEDALVVYREMREKEMDLNTHLYNSLLAMCADVGYTDLAFE 412
Query: 318 IYELVK-HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LI 374
I+E +K + ++I YS CS R+ + E +M + E + P + VL L+
Sbjct: 413 IFEDMKSSDTCSPDSWTFSSLITIYS-CS--GRVSEAERMMNEMIESGFEPTIFVLTSLV 469
Query: 375 RVYAKEDCLEEMEKSIN 391
+ Y K +++ K+ N
Sbjct: 470 QCYGKAKRTDDVVKTFN 486
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 184 NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
N HL YN+LL G +D +F D+K SP T+++LI+++ V
Sbjct: 390 NTHL-----YNSLLAMCADVGYTDLAFEIFEDMKSSDTCSPDSWTFSSLITIYSCSGRVS 444
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
E E+ +S P +F L+ Y A V + + + + PD
Sbjct: 445 EAERMMNEMIESGFEPTIFVLTSLVQCYGKAKRTDDVVKTFNQLLDMGIEPD 496
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 46/95 (48%)
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
++ YN + VF + +D E F E+ + P+ T++ +I+ + ++ K E ++
Sbjct: 181 VILYNVTLKVFRKCKDLDGAEKVFGEMLQRGVKPDNVTFSTIISCARSCYLPDKAVEWFE 240
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
M PD TY +++ Y +G++ +Y+
Sbjct: 241 KMPLFGCEPDDVTYSVMIDSYGKAGDIDMALNLYD 275
>gi|255661182|gb|ACU25760.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 426
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN +I Y K + Q M++ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 311
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/296 (18%), Positives = 119/296 (40%), Gaps = 3/296 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 11 TYSTLITHFGKEGLFDAALSWLQKMEQD-QVPGDLVLYSNLIELSRKLCDYSKAISIFSR 69
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K+S +P++ YN +I + A ++ + + MK V+P+T +Y LL Y +
Sbjct: 70 LKNSGYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTLLTMYVENKK 129
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 130 FLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 189
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
LL RVY + E + + K V ++ Y + +K N ++ +S
Sbjct: 190 LL-RVYGDAELFGE-AIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQS 247
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
G Y + + ++ +++ + +++ + ++ + F M AY G
Sbjct: 248 RGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAG 303
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 108/244 (44%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 197 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG-IEPN 253
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + + +I Y A + + +
Sbjct: 254 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLH 313
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P DT ++L G R+E+ + + +D K+ + MI
Sbjct: 314 ELKRPDNIPRDTAIHILAGAG--------RIEEATYVFRQAIDAGEVKDITVFERMIHLL 365
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI--RVYAKEDCLEEMEKSINDAFEHKTS 399
SK + ++ MR + Y P NV+ I Y K L E +K+ ND +
Sbjct: 366 SKYKKYANVVEVFDKMRGLG---YFPDSNVIAIVLNAYGK---LHEFDKA-NDVYMEMQE 418
Query: 400 VTTV 403
V V
Sbjct: 419 VGCV 422
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 108/262 (41%), Gaps = 11/262 (4%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK + +P +V YN +I VFG+ L + E+K + + PN +Y+ L
Sbjct: 62 KAISIFSRLKN-SGYTPDLVAYNAMIIVFGKAKLFREARSLISEMKTAGVIPNTTSYSTL 120
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + ++ M+ + D T +++ Y G +K++ ++
Sbjct: 121 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCL 383
++ Y + + L RL+ K NV+ +I +Y K
Sbjct: 181 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMIMIYGKTLEH 235
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
E+ I + ++ I+S + + +D+ A ++ S+G + + L+ +
Sbjct: 236 EKANNLIQEMQSRGIEPNSI-TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 294
Query: 444 KMVMYASQRRVEEMESVLKEME 465
+V Y V + +L E++
Sbjct: 295 MIVAYERAGLVAHAKRLLHELK 316
>gi|440793601|gb|ELR14780.1| PPR repeat/pentatricopeptide repeat domain containing protein,
partial [Acanthamoeba castellanii str. Neff]
Length = 610
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 19/235 (8%)
Query: 90 DELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAG 149
++L+A V LD + S L R S + G +AL+ L +AG
Sbjct: 28 EDLVAEVRALDNAQPSMPAVASILRRMQS--------LHDQGKDVGVALDALKEELSRAG 79
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDK 208
P I G++ D A DL + ++ + AL+ A G K
Sbjct: 80 QCHPFICSAL---IALLGKLQRTDAALDLVTRMTQQGYVPDVFVLTALVSALGRAGEVGK 136
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
Q F ++++ ++P++ +YN++I F R +D + + +K + P+V TY +I
Sbjct: 137 AQYFFNEIQR-LGMTPTLHSYNSMIMAFARAGRIDKVRDMLEVMKHKGIEPDVRTYTEII 195
Query: 269 AGYMTAWMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
A G+V E YQ M+ V PD Y L+ G++H G+ + +++ E
Sbjct: 196 NNSCKA---GRVAEAYQTFIEMQDVGVQPDLKVYSALIAGFSHVGDHLKAQQLKE 247
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 74/347 (21%), Positives = 147/347 (42%), Gaps = 14/347 (4%)
Query: 152 TPMTKEEY-------TKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYN 203
T MT++ Y T + GR V A F E + T+ +YN+++ A+
Sbjct: 107 TRMTQQGYVPDVFVLTALVSALGRAGEVGKAQYFFNEIQRLGMTPTLHSYNSMIMAFARA 166
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G DK + + ++ K I P + TY +I+ + V F E++D + P++
Sbjct: 167 GRIDKVRDML-EVMKHKGIEPDVRTYTEIINNSCKAGRVAEAYQTFIEMQDVGVQPDLKV 225
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
Y+ LIAG+ K +++ + M+A + TY +L G A + L ME++ E +K
Sbjct: 226 YSALIAGFSHVGDHLKAQQLKEEMEALGLEASMITYSGMLSGLARNRQLTEMERVIEAMK 285
Query: 324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKED 381
P RA+ ++ S T + + + + + +K+ +V L+RV AK D
Sbjct: 286 KR---NMVPNARALGDLINRMSDTMPMDQAFNMAQALVQKKVEANADVWHALLRVCAKAD 342
Query: 382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLY 441
+E+ + ++ H + + ++ ++ + V + A + + S+Y
Sbjct: 343 DVEKGIRILDVMRSHSPELVSASSYCVLIDTFAKAGRVSRGATLLAHMRKHKIKPDVSIY 402
Query: 442 HSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
+ + + + V + M+ + S TF I+ A G+
Sbjct: 403 NVFIEGAMRETGYSKALQVFELMKAEGVRPSHTTFSILIDAAGHAGR 449
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 3/139 (2%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
L + +Y L+ + G + +L ++K I P + YN I R
Sbjct: 361 LVSASSYCVLIDTFAKAGRVSRGATLLAHMRKH-KIKPDVSIYNVFIEGAMRETGYSKAL 419
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
F+ +K + P+ T++ LI A + E + M P PDTN Y L+
Sbjct: 420 QVFELMKAEGVRPSHTTFSILIDAAGHAGRPEEAEAHFAAMGTSP-RPDTNNYNSLIEAL 478
Query: 307 AHSGNLPRMEKIYE-LVKH 324
A +G L + E++ + L++H
Sbjct: 479 ARNGQLDKAERVLDSLLRH 497
>gi|410110123|gb|AFV61141.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
macrophylla]
Length = 381
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 93 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 151
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN +I Y K + Q M++ +
Sbjct: 152 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIE 211
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 212 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 271
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 110/235 (46%), Gaps = 34/235 (14%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 157 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG-IEPN 213
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + + +I Y A + + +
Sbjct: 214 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLH 273
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P DT ++L A +G R+E+ + + +D K+ + MI
Sbjct: 274 ELKRPDNIPRDTAIHIL-----AGAG---RIEEATYVFRQAIDAGEVKDITVFERMIHLL 325
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAF 394
SK + ++ MR + Y P +V+ ++ Y K L+E +K+ ND +
Sbjct: 326 SKXKKYSNVVEVFNKMRGLG---YFPDSDVIAXVLNAYGK---LQEFDKA-NDVY 373
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 110/262 (41%), Gaps = 11/262 (4%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P +V YN +I+VFG+ L + E+K + + PN +Y+ L
Sbjct: 22 KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 80
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + ++ M+ + D T +++ Y G +K++ ++
Sbjct: 81 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 140
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCL 383
++ Y + + L RL+ K NV+ +I +Y K
Sbjct: 141 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMIMIYGKTLEH 195
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
E+ I + ++ I+S + + +D+ A ++ S+G + + L+ +
Sbjct: 196 EKANNLIQEMQSRGIEPNSI-TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 254
Query: 444 KMVMYASQRRVEEMESVLKEME 465
+V Y V + +L E++
Sbjct: 255 MIVAYERAGLVAHAKRLLHELK 276
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 49/262 (18%), Positives = 102/262 (38%), Gaps = 2/262 (0%)
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+V Y+ LI + +L + F +K S +P++ YN +I + A ++ + +
Sbjct: 4 LVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIS 63
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
MK VMP+T +Y LL Y + ++ ++ + MI Y +
Sbjct: 64 EMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLG 123
Query: 346 VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRI 405
+ K+ MR + + N LL RVY + E + + K V
Sbjct: 124 MAKEADKLFWGMRKMGIEPNVVSYNTLL-RVYGDAELFGE-AIHLFRLMQRKNIEQNVVT 181
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
++ Y + +K N ++ +S G Y + + ++ +++ + +++
Sbjct: 182 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 241
Query: 466 NYKIDCSKKTFWIMYYAYATCG 487
+ ++ + F M AY G
Sbjct: 242 SSGVEIDQILFQTMIVAYERAG 263
>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Glycine max]
Length = 729
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 15/187 (8%)
Query: 134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT- 192
P AL W +++ TP E Y ++ GR N+++A + F + KH K GT
Sbjct: 91 PSKALRFFKWTQQKGFSHTP---ESYFIMLEILGRERNLNVARN-FLFSIEKHSK--GTV 144
Query: 193 ------YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
+N+L+ +Y GL + LF+ +K A +SPS+VT+N+L+S+ + + +
Sbjct: 145 KLEDRFFNSLIRSYAEAGLFKESMKLFQTMKSIA-VSPSVVTFNSLMSILLKRGRTNMAK 203
Query: 247 AAFQEIKDS-NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ E+ + +SP+ TYN LI G+ M + ++ M++ D TY L+ G
Sbjct: 204 EVYDEMLGTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDG 263
Query: 306 YAHSGNL 312
+G +
Sbjct: 264 LCRAGKV 270
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 11/124 (8%)
Query: 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN 260
+ NG+ KC+ L +P++VTY TLI + V+ +E+ L PN
Sbjct: 276 LVNGMGKKCEGL----------NPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPN 325
Query: 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ TYN L+ G A K++++ + MK+ G PDT T+ ++ + +GNL K++
Sbjct: 326 MITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVF 385
Query: 320 ELVK 323
E +K
Sbjct: 386 ESMK 389
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 21/168 (12%)
Query: 157 EEYTKG-IKFAGRINNVDL----AADLFAEAAN--KHLKTIG------TYNALLGAYMYN 203
E+++KG +K R N + A LF E+ + +K+I T+N+L+ +
Sbjct: 137 EKHSKGTVKLEDRFFNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKR 196
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G ++ + ++ ++ +SP TYN LI F + +VD F+E++ N +V T
Sbjct: 197 GRTNMAKEVYDEMLGTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVT 256
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMM-----KAGPVMPDTNTYLLLLRGY 306
YN L+ G A GKV ++ K + P+ TY L+RGY
Sbjct: 257 YNTLVDGLCRA---GKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGY 301
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 14/178 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ Y ++ + ++ + P+++TYNTL+ +D M+ +
Sbjct: 293 TYTTLIRGYCMKQEVEEALVVLEEMTSRG-LKPNMITYNTLVKGLCEAHKLDKMKDVLER 351
Query: 252 IK-DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+K D SP+ FT+N +I + A + ++++ MK + D+ +Y L+R G
Sbjct: 352 MKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKG 411
Query: 311 NLPRMEKIY-ELVKHHVDGKEF---PL------IRAMICAYSKCSVTDRIKKIEALMR 358
+ E+++ EL + + +F PL I +C + K +R+ I LM+
Sbjct: 412 DYDMAEQLFDELFEKEILLSKFGSKPLAASYNPIFESLCEHGKTKKAERV--IRQLMK 467
>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Cucumis sativus]
Length = 757
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDL-KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TYN L+ G ++ + + KK +++P++VTY TLI + ++ A F+
Sbjct: 257 TYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFE 316
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHS 309
E+ + L N TYN LI G A + K+++I + G PDT T+ L+ + H+
Sbjct: 317 EMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHA 376
Query: 310 GNLPRMEKIYE 320
GNL K++E
Sbjct: 377 GNLDDALKVFE 387
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 84/181 (46%), Gaps = 9/181 (4%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT---- 192
AL+ NW + + GY T++ Y ++ GR +++ A + + +
Sbjct: 95 ALQFFNWAQ-EMGY--THTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARF 151
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N+L+ + GL + +F +K +SPS+VT+N+L+++ + + + + E+
Sbjct: 152 FNSLMRNFNRAGLFQESIKVFTIMKSHG-VSPSVVTFNSLLTILLKRGRTNMAKKVYDEM 210
Query: 253 KDS-NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ ++P+ FT+N LI G+ M I+ + PD TY L+ G +G
Sbjct: 211 LSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGK 270
Query: 312 L 312
+
Sbjct: 271 V 271
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ T+N+LL + G ++ + ++ ++ ++P T+N LI F +VD
Sbjct: 183 SVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRI 242
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM-----KAGPVMPDTNTYLLLL 303
F ++ P+V TYN L+ G A GKV Y ++ K+ + P+ TY L+
Sbjct: 243 FNDLSRFGCEPDVVTYNTLVDGLCRA---GKVTVAYNVVKGMGKKSVDLNPNVVTYTTLI 299
Query: 304 RGYAHSGNLPRMEKIYE 320
RGY + + ++E
Sbjct: 300 RGYCAKREIEKALAVFE 316
>gi|410110107|gb|AFV61133.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
brasiliensis]
Length = 382
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 94 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 152
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN +I Y K + Q M++ +
Sbjct: 153 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIE 212
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 213 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 272
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 110/235 (46%), Gaps = 34/235 (14%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 158 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG-IEPN 214
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + + +I Y A + + +
Sbjct: 215 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLH 274
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P DT ++L A +G R+E+ + + +D K+ + MI
Sbjct: 275 ELKRPDNIPRDTAIHIL-----AGAG---RIEEATYVFRQAIDAGEVKDITVFERMIHLL 326
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAF 394
SK + ++ MR + Y P NV+ ++ Y K L+E +K+ ND +
Sbjct: 327 SKYKKYXNVVEVFDKMRGLG---YFPDSNVIAVVLNAYGK---LQEFDKA-NDVY 374
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 110/262 (41%), Gaps = 11/262 (4%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P +V YN +I+VFG+ L + E+K + + PN +Y+ L
Sbjct: 23 KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 81
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + ++ M+ + D T +++ Y G +K++ ++
Sbjct: 82 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 141
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCL 383
++ Y + + L RL+ K NV+ +I +Y K
Sbjct: 142 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMIMIYGKTLEH 196
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
E+ I + ++ I+S + + +D+ A ++ S+G + + L+ +
Sbjct: 197 EKANNLIQEMQSRGIEPNSI-TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 255
Query: 444 KMVMYASQRRVEEMESVLKEME 465
+V Y V + +L E++
Sbjct: 256 MIVAYERAGLVAHAKRLLHELK 277
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 49/262 (18%), Positives = 102/262 (38%), Gaps = 2/262 (0%)
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+V Y+ LI + +L + F +K S +P++ YN +I + A ++ + +
Sbjct: 5 LVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIS 64
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
MK VMP+T +Y LL Y + ++ ++ + MI Y +
Sbjct: 65 EMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLG 124
Query: 346 VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRI 405
+ K+ MR + + N LL RVY + E + + K V
Sbjct: 125 MAKEADKLFWGMRKMGIEPNVVSYNTLL-RVYGDAELFGE-AIHLFRLMQRKNIEQNVVT 182
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
++ Y + +K N ++ +S G Y + + ++ +++ + +++
Sbjct: 183 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 242
Query: 466 NYKIDCSKKTFWIMYYAYATCG 487
+ ++ + F M AY G
Sbjct: 243 SSGVEIDQILFQTMIVAYERAG 264
>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Glycine max]
Length = 836
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YN L+ AY G + L RD K I P+ TY++LI + VD + F+E
Sbjct: 643 VYNILIAAYCRIGNVTEAFKL-RDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEE 701
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ L PNVF Y LI G+ V I M + + P+ TY +++ GY GN
Sbjct: 702 MRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGN 761
Query: 312 LPRM-EKIYELVKHHV 326
+ E + E++++ +
Sbjct: 762 MKEARELLNEMIRNGI 777
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 5/154 (3%)
Query: 166 AGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
GR+ + A DLF + + + TYN ++ +G ++ F+D + ++P
Sbjct: 268 GGRVGD---AVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALR-FKDRMVRSKVNP 323
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
S+VTY LIS +L + + E+ +PN +N LI GY G+ +
Sbjct: 324 SVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVR 383
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
M + P+ T+ LL+G+ S + + E++
Sbjct: 384 DEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQV 417
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 70/320 (21%), Positives = 129/320 (40%), Gaps = 54/320 (16%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKK--EANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
T NALL G + +F LK+ E + ++YNTLI FG +E AF
Sbjct: 503 TSNALLHGLCERG---NMEEVFEVLKQMLEKGLLLDRISYNTLI--FG-CCKWGKIEEAF 556
Query: 250 ---QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM---KAGPVMPDTNTYLLLL 303
+E+ P+ +TYN+L+ G GK++++++++ K +P+ TY LLL
Sbjct: 557 KLKEEMVQQEFQPDTYTYNFLMKGLAD---MGKIDDVHRLLHEAKEYGFVPNVYTYALLL 613
Query: 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
GY + + K ++ ++D Y K ++ + I
Sbjct: 614 EGYCKADRIEDAVKFFK----NLD-------------YEKVELSSVVYNI---------- 646
Query: 364 EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLA 423
LI Y + + E K + DA + + + T ++ VD+
Sbjct: 647 ---------LIAAYCRIGNVTEAFK-LRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAK 696
Query: 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483
+ + G Y + + + +++ + S+L EM + I +K T+ IM Y
Sbjct: 697 EIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGY 756
Query: 484 ATCGQRRKVNQVLGLMCKNG 503
G ++ ++L M +NG
Sbjct: 757 CKLGNMKEARELLNEMIRNG 776
>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 78/162 (48%), Gaps = 5/162 (3%)
Query: 170 NNVDLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
++D A ++ E H+ + TY+ L+ +G + LF ++ + I P +
Sbjct: 257 GDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDAL 316
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TYN LI+ F VD + +K + +PNVF Y+ L+ G+ + +E++ M
Sbjct: 317 TYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEM 376
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329
K+ + PDT Y L+ + +G R+++ EL+K + K
Sbjct: 377 KSLGLKPDTVGYTTLINFFCRAG---RVDEAMELLKDMXENK 415
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 7/177 (3%)
Query: 137 ALEVLN-WRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH--LKTIGTY 193
A EV+ ++ Y +T G+ +GR+ A +LF E +K L TY
Sbjct: 262 AFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKE---AIELFEEMVSKDQILPDALTY 318
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
NAL+ + + D+ + +KK +P++ Y+ L++ F + ++ + F E+K
Sbjct: 319 NALINGFCHGXKVDRALKIMEFMKKNG-CNPNVFNYSALMNGFCKEGRLEEAKEVFDEMK 377
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
L P+ Y LI + A + E+ + M DT T+ ++L G G
Sbjct: 378 SLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREG 434
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLIS-VFGRLLLVDHMEAAFQEIKDSNLSPNV 261
NG D + ++KK P+++TY+TLI+ + G L + +E + + + P+
Sbjct: 256 NGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDA 315
Query: 262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321
TYN LI G+ + +I + MK P+ Y L+ G+ G L +++++
Sbjct: 316 LTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDE 375
Query: 322 VK 323
+K
Sbjct: 376 MK 377
>gi|356555227|ref|XP_003545936.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
mitochondrial-like [Glycine max]
Length = 486
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 89/424 (20%), Positives = 178/424 (41%), Gaps = 54/424 (12%)
Query: 126 LMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA 183
+++ L R R AL++ W + + EY + G+++ A F
Sbjct: 59 IIRDLRKRSRFSQALQISEWMHNKGV--CIFSPTEYAVHLDLIGKVHGFSSAETYFDALK 116
Query: 184 NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
++H KT TY ALL Y+ +DK S + +K + + S +TYN ++ ++ + +
Sbjct: 117 DQH-KTNKTYGALLNCYVRQRQTDKALSHLQKMK-DLGFASSPLTYNDIMCLYTNIGQHE 174
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP-VMPDTNTYLLL 302
+ +E+K + + P+ F+Y I Y +G VE + + M+ P ++ D NTY +
Sbjct: 175 KVPDVLREMKQNQVLPDNFSYRICINSYGVRSDFGGVERVLKEMETQPNIVMDWNTYSIA 234
Query: 303 LRGYAHSGNLPRMEKIYELVK--HHVDGKEFPLIRAMICAYSKCSVTDRIKKI------- 353
Y +G L R + + L K +D K+ +I Y++ + + + +I
Sbjct: 235 ANFYIKAG-LTR-DAVCALRKSEERLDNKDGQGYNHLISLYAQLGLKNEVMRIWDLEKNA 292
Query: 354 -------------EALMRLI----PEKEYRPW----------LNVLLIRVYAKEDCLEEM 386
E+L++L EK + W + ++I Y+++ L E
Sbjct: 293 CKRCINRDFTTLLESLVKLGELDEAEKILKEWESSDNCYDFGIPSIVIIGYSQKG-LHEK 351
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA-----ESAGWRLCRSLY 441
++ + ++K VTT + Y ++K K A E+ GW+ +
Sbjct: 352 ALAMLEELQNKEKVTTPNCWSIVAGGYIHKGEMEKAFKCFKTALSLYVENKGWKPNAKVI 411
Query: 442 HSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501
+ VE+ E ++ + N + +++ + + Y G ++V+ +LG M K
Sbjct: 412 AELLRWIGDNGSVEDAEVLVSLLRN-AVPVNRQMYHTLIKTYIRGG--KEVDDLLGRMEK 468
Query: 502 NGYD 505
+G D
Sbjct: 469 DGID 472
>gi|297821008|ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324225|gb|EFH54646.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 766
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 2/133 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YN L+G + ++K + D++KE + P +TYNTLIS FG+ + +E ++
Sbjct: 548 AYNMLIGLFCDKNNAEKVYEMLTDMEKEG-MKPDSITYNTLISFFGKHKDFESVERMMEQ 606
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSG 310
+++ L P V TY +I Y + G+ ++++ M V P+T Y +L+ ++ G
Sbjct: 607 MREDELDPTVATYGAVIEAYCSVGELGEALKLFKDMGLRSKVNPNTVIYNILINAFSKLG 666
Query: 311 NLPRMEKIYELVK 323
N + + E +K
Sbjct: 667 NFGQALSLKEEMK 679
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 16/174 (9%)
Query: 110 GSCLFRRHSNGYAFVELMKQLG-SRPRLALEVL-------NWRRRQAGYGTPMTKE---- 157
G C RR + VE +++ G S LA +L N + T M KE
Sbjct: 520 GLCQVRRDHDAIRVVEKLREGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGMKP 579
Query: 158 ---EYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLF 213
Y I F G+ + + + + L T+ TY A++ AY G + LF
Sbjct: 580 DSITYNTLISFFGKHKDFESVERMMEQMREDELDPTVATYGAVIEAYCSVGELGEALKLF 639
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+D+ + ++P+ V YN LI+ F +L + +E+K + PNV TYN L
Sbjct: 640 KDMGLRSKVNPNTVIYNILINAFSKLGNFGQALSLKEEMKMKMVRPNVETYNAL 693
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 76/392 (19%), Positives = 151/392 (38%), Gaps = 62/392 (15%)
Query: 173 DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
D+ +DL NK +NALL N + +L + E I P +VT L
Sbjct: 280 DILSDLMK---NKAPLEAPPFNALLSCLGRNMNIGRMNALVLKMD-EMKIRPDVVTLGIL 335
Query: 233 ISVFGRLLLVDHMEAAFQEI-----KDSN-LSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
I+ + VD F+++ D N + + +N LI G + EE+
Sbjct: 336 INTLCKSRRVDEALQVFEQMCGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEELLVR 395
Query: 287 MKAGP-VMPDTNTYLLLLRGYAHSGNLPRMEKIYE--------------------LVKHH 325
MK +P+T TY L+ GY +G L +++ + +HH
Sbjct: 396 MKMEERCVPNTVTYNCLIDGYCRAGKLETAKEVVSRMKEDGIKPDVVTVNTIVGGMCRHH 455
Query: 326 -------------VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI-----PEKEYRP 367
+G + ++ M ++ CS+++ K + +++ P+ +
Sbjct: 456 GLNMAVLFFMDMEKEGVKGNVVTYMTLIHACCSLSNIEKAMHWFDKMLEAGCSPDAKIYY 515
Query: 368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
L L +V D + +EK F + ++ + N +K+ +
Sbjct: 516 ALISGLCQVRRDHDAIRVVEKLREGGFSLDLLAYNM-----LIGLFCDKNNAEKVYEMLT 570
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC- 486
E G + Y++ + + + E +E ++++M ++D + T+ + AY +
Sbjct: 571 DMEKEGMKPDSITYNTLISFFGKHKDFESVERMMEQMREDELDPTVATYGAVIEAYCSVG 630
Query: 487 --GQRRKVNQVLGLMCKNG-----YDVPVNAF 511
G+ K+ + +GL K Y++ +NAF
Sbjct: 631 ELGEALKLFKDMGLRSKVNPNTVIYNILINAF 662
>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
and contains a RepB PF|01051 protein and multiple PPR
PF|01535 repeats [Arabidopsis thaliana]
Length = 613
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TY++L+ + + D+ + +F +L + P++VTYNTLI F + V+ F
Sbjct: 344 IFTYSSLINGFCMHDRLDEAKHMF-ELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELF 402
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E+ L N TYN LI G A ++I++ M + V PD TY +LL G
Sbjct: 403 REMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 462
Query: 310 GNLPRMEKIYELVK 323
G L + ++E ++
Sbjct: 463 GKLEKALVVFEYLQ 476
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 82/155 (52%), Gaps = 4/155 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T++AL+ A++ G + + L+ ++ K + I P I TY++LI+ F +D + F+
Sbjct: 311 TFSALIDAFVKEGKLVEAEKLYDEMIKRS-IDPDIFTYSSLINGFCMHDRLDEAKHMFEL 369
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + PNV TYN LI G+ A + E+++ M ++ +T TY L++G +G+
Sbjct: 370 MISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD 429
Query: 312 LPRMEKIY-ELVKHHV--DGKEFPLIRAMICAYSK 343
+KI+ ++V V D + ++ +C Y K
Sbjct: 430 CDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 464
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 12/205 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y IK + V+ +LF E + + L TYN L+ G D Q +F+ +
Sbjct: 382 YNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMV 441
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + P I+TY+ L+ + ++ F+ ++ S + P+++TYN +I G A
Sbjct: 442 SDG-VPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKA--- 497
Query: 278 GKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV----DGKE 330
GKVE +++ + V P+ Y ++ G+ G + ++ +K G
Sbjct: 498 GKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTY 557
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEA 355
LIRA + K + + IK++ +
Sbjct: 558 NTLIRARLRDGDKAASAELIKEMRS 582
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 12/199 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ G D SL + ++K I +V Y T+I V+ F E
Sbjct: 206 TYGTVVNGLCKRGDIDLALSLLKKMEK-GKIEADVVIYTTIIDALCNYKNVNDALNLFTE 264
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + + PNV TYN LI W + M + P+ T+ L+ + G
Sbjct: 265 MDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGK 324
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
L EK+Y E++K +D F ++I + + DR+ + + + L+ K+ P N
Sbjct: 325 LVEAEKLYDEMIKRSIDPDIFTY-SSLINGF---CMHDRLDEAKHMFELMISKDCFP--N 378
Query: 371 VL----LIRVYAKEDCLEE 385
V+ LI+ + K +EE
Sbjct: 379 VVTYNTLIKGFCKAKRVEE 397
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 5/180 (2%)
Query: 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIG 191
R +E+ ++ G +T +G+ AG + D+A +F + + + I
Sbjct: 394 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAG---DCDMAQKIFKKMVSDGVPPDII 450
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ LL G +K +F L+K + + P I TYN +I + V+ F
Sbjct: 451 TYSILLDGLCKYGKLEKALVVFEYLQK-SKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCS 509
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + PNV Y +I+G+ + + + +++ MK +P++ TY L+R G+
Sbjct: 510 LSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGD 569
>gi|410110081|gb|AFV61120.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
camara]
Length = 381
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 93 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 151
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN +I Y K + Q M++ +
Sbjct: 152 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIE 211
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 212 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 271
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 110/235 (46%), Gaps = 34/235 (14%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 157 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG-IEPN 213
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + + +I Y A + + +
Sbjct: 214 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLH 273
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P DT ++L A +G R+E+ + + +D K+ + MI
Sbjct: 274 ELKRPDNIPRDTAIHIL-----AGAG---RIEEATYVFRQAIDAGEVKDITVFERMIHLL 325
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAF 394
SK + ++ MR + Y P NV+ ++ Y K L+E +K+ ND +
Sbjct: 326 SKYKKYSNVVEVFDKMRGLG---YFPDSNVITVVLNAYGK---LQEFDKA-NDVY 373
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 110/262 (41%), Gaps = 11/262 (4%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P +V YN +I+VFG+ L + E+K + + PN +Y+ L
Sbjct: 22 KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVXPNTTSYSTL 80
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + ++ M+ + D T +++ Y G +K++ ++
Sbjct: 81 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 140
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCL 383
++ Y + + L RL+ K NV+ +I +Y K
Sbjct: 141 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMIMIYGKTLEH 195
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
E+ I + ++ I+S + + +D+ A ++ S+G + + L+ +
Sbjct: 196 EKANNLIQEMQSRGIEPNSI-TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 254
Query: 444 KMVMYASQRRVEEMESVLKEME 465
+V Y V + +L E++
Sbjct: 255 MIVAYERAGLVAHAKRLLHELK 276
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/262 (18%), Positives = 101/262 (38%), Gaps = 2/262 (0%)
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+V Y+ LI + +L + F +K S +P++ YN +I + A ++ + +
Sbjct: 4 LVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIS 63
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
MK V P+T +Y LL Y + ++ ++ + MI Y +
Sbjct: 64 EMKTAGVXPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLG 123
Query: 346 VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRI 405
+ K+ MR + + N LL RVY + E + + K V
Sbjct: 124 MAKEADKLFWGMRKMGIEPNVVSYNTLL-RVYGDAELFGE-AIHLFRLMQRKNIEQNVVT 181
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
++ Y + +K N ++ +S G Y + + ++ +++ + +++
Sbjct: 182 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 241
Query: 466 NYKIDCSKKTFWIMYYAYATCG 487
+ ++ + F M AY G
Sbjct: 242 SSGVEIDQILFQTMIVAYERAG 263
>gi|291386863|ref|XP_002709946.1| PREDICTED: leucine-rich PPR motif-containing protein [Oryctolagus
cuniculus]
Length = 1395
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 86/360 (23%), Positives = 152/360 (42%), Gaps = 51/360 (14%)
Query: 179 FAEAANKHLKTIGT------YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
FA + L+ +GT YNALL Y+ N ++ EANI P+ VTY L
Sbjct: 146 FAHQIWEKLQKLGTVYDVSHYNALLKVYLQNEYKFSPTDFLAKME-EANIQPNRVTYQRL 204
Query: 233 ISVFGRLLLVDHMEAA-----FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
I+ + V +E A F + KD ++ VF+ L+ G+ A E I +M
Sbjct: 205 IAAYCN---VGDIEGASKILGFMKTKDLPVTEAVFS--ALVTGHARAGDMENAENILTVM 259
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV-KHHVDGKEFPLIRAMICAYSKCS- 345
K + P +TYL LL YA G++ R+++ E V K + + L++ +I ++SK
Sbjct: 260 KEAGIEPGPDTYLALLNAYAEKGDIDRVKQTLEKVEKSDLYLMDRDLLQ-IIFSFSKAGY 318
Query: 346 ---VTDRIKKIEALMRLIP-----------EKEYRPWLNVLLIRVYAKEDCLEE------ 385
V++ ++KI R IP EK L +LL +KED L +
Sbjct: 319 PQYVSEILEKITYERRYIPDAMNLILLLVTEKLEDTALQILLACPISKEDNLTDFGSFFL 378
Query: 386 -----MEKSINDAFEHKTSVTTVRIMRCIVSSYFRC----NAVDKLANFVKRAESAGWRL 436
++ ++ ++ + ++ + C N D +K + G+ +
Sbjct: 379 KHCVTVDTPVDKLIDYCKKLKEAQMHSSPLQFTLHCALVANKTDLAKALMKTLKEEGFPV 438
Query: 437 CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
+ +V Y ++ V+ + VLK M + ++T+ + Y + + + V VL
Sbjct: 439 RTHYFWPLLVGYQKKKNVQGIIEVLKGMHEMGVVPDQETY--INYVFPSFDNVQSVRAVL 496
>gi|2335106|gb|AAC02776.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 810
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 25/216 (11%)
Query: 115 RRHSNGYAFVELMKQLGSRPRL------------------ALEVLNWRRRQAGYGTP--M 154
R++S ++ ELMK RP AL++ N R + P +
Sbjct: 262 RQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVV 321
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLF 213
T G I N +F + LK I +YNAL+GAY +G+S S+
Sbjct: 322 TFTSIMHLYSVKGEIENCRA---VFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVL 378
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
D+K+ I P +V+Y L++ +GR + F ++ PNV TYN LI Y +
Sbjct: 379 GDIKQNG-IIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGS 437
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ EI++ M+ + P+ + LL + S
Sbjct: 438 NGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRS 473
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 89/186 (47%), Gaps = 7/186 (3%)
Query: 175 AADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
A DLF K + + T+ +++ Y G + C+++F + E + P+IV+YN
Sbjct: 302 ALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEG-LKPNIVSYNA 360
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L+ + + + +IK + + P+V +Y L+ Y + GK +E++ MM+
Sbjct: 361 LMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKER 420
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351
P+ TY L+ Y +G L +I+ ++ DG + P + ++ + CS + +
Sbjct: 421 RKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQ--DGIK-PNVVSVCTLLAACSRSKKKV 477
Query: 352 KIEALM 357
++ ++
Sbjct: 478 NVDTVL 483
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 1/152 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLK-KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
T+N ++ G S + LF ++ K A P +VT+ +++ ++ +++ A F+
Sbjct: 285 TFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFE 344
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ L PN+ +YN L+ Y M G + +K ++PD +Y LL Y S
Sbjct: 345 AMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSR 404
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342
+ ++++ +++ A+I AY
Sbjct: 405 QPGKAKEVFLMMRKERRKPNVVTYNALIDAYG 436
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYNAL+ AY NG + +FR ++++ I P++V+ TL++ R +++
Sbjct: 427 TYNALIDAYGSNGFLAEAVEIFRQMEQDG-IKPNVVSVCTLLAACSRSKKKVNVDTVLSA 485
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ ++ N YN I Y+ A K +YQ M+ V D+ T+ +L+ G
Sbjct: 486 AQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSK 545
Query: 312 LP 313
P
Sbjct: 546 YP 547
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 103/237 (43%), Gaps = 36/237 (15%)
Query: 180 AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
A++ +L T YN+ +G+Y+ +K +L++ ++K+ + VT+ LIS R+
Sbjct: 486 AQSRGINLNT-AAYNSAIGSYINAAELEKAIALYQSMRKK-KVKADSVTFTILISGSCRM 543
Query: 240 L-----------------------LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
V E+ F ++K + P+V Y ++ Y +
Sbjct: 544 SKYPEAISYLKEMEDLSIPLTKEGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEK 603
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336
WGK E++ M+A + PD+ L+R + G + + +L++ KE P A
Sbjct: 604 WGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMRE----KEIPFTGA 659
Query: 337 MICA-YSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLL----IRVYAKEDCLEEMEK 388
+ +S C+ K+ L++++ Y P L++ L + ++ K +E M K
Sbjct: 660 VFFEIFSACNTLQEWKRAIDLIQMM--DPYLPSLSIGLTNQMLHLFGKSGKVEAMMK 714
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 110/303 (36%), Gaps = 41/303 (13%)
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G + C ++F+ +K + N YN +I + R VD F E++ + P+ T
Sbjct: 121 GCIELCVNVFKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAET 180
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
Y+ LI + A W + M + P +TY L+ SGN + E+ K
Sbjct: 181 YDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNW---REALEVCK 237
Query: 324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL 383
D P + S + K + L+ + RP I +Y CL
Sbjct: 238 KMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIY----CL 293
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS---L 440
++ +S ++ MR KRAE CR
Sbjct: 294 SKLGQS-------SQALDLFNSMR------------------EKRAE------CRPDVVT 322
Query: 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
+ S M +Y+ + +E +V + M + + ++ + AYA G VLG +
Sbjct: 323 FTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIK 382
Query: 501 KNG 503
+NG
Sbjct: 383 QNG 385
>gi|410110083|gb|AFV61121.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
cujabensis]
Length = 359
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 93 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 151
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN +I Y K + Q M++ +
Sbjct: 152 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIE 211
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 212 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 271
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 22/166 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 157 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG-IEPN 213
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + + +I Y A + + +
Sbjct: 214 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLH 273
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+K +P DT ++L A +G R+E+ + + +D E
Sbjct: 274 ELKRPDNIPRDTAIHIL-----AGAG---RIEEATYVFRQAIDAGE 311
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 109/262 (41%), Gaps = 11/262 (4%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P +V YN +I+VFG+ L + E+K + PN +Y+ L
Sbjct: 22 KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTXGVMPNTTSYSTL 80
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + ++ M+ + D T +++ Y G +K++ ++
Sbjct: 81 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 140
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCL 383
++ Y + + L RL+ K NV+ +I +Y K
Sbjct: 141 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMIMIYGKTLEH 195
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
E+ I + ++ I+S + + +D+ A ++ S+G + + L+ +
Sbjct: 196 EKANNLIQEMQSRGIEPNSI-TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 254
Query: 444 KMVMYASQRRVEEMESVLKEME 465
+V Y V + +L E++
Sbjct: 255 MIVAYERAGLVAHAKRLLHELK 276
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 49/262 (18%), Positives = 102/262 (38%), Gaps = 2/262 (0%)
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+V Y+ LI + +L + F +K S +P++ YN +I + A ++ + +
Sbjct: 4 LVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREARSLIS 63
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
MK VMP+T +Y LL Y + ++ ++ + MI Y +
Sbjct: 64 EMKTXGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLG 123
Query: 346 VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRI 405
+ K+ MR + + N LL RVY + E + + K V
Sbjct: 124 MAKEADKLFWGMRKMGIEPNVVSYNTLL-RVYGDAELFGE-AIHLFRLMQRKNIEQNVVT 181
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
++ Y + +K N ++ +S G Y + + ++ +++ + +++
Sbjct: 182 YNSMIMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLR 241
Query: 466 NYKIDCSKKTFWIMYYAYATCG 487
+ ++ + F M AY G
Sbjct: 242 SSGVEIDQILFQTMIVAYERAG 263
>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/385 (20%), Positives = 156/385 (40%), Gaps = 29/385 (7%)
Query: 144 RRRQAGYGTPMTKEEYTKGIKFAGRIN--NVDLAADLFAEAANKHLKT-IGTYNALLGAY 200
R R+ GY + + Y+ I+ + N N + ++ E L+ + +N ++ +
Sbjct: 224 RMREDGYPSDLVN--YSLIIRSLMKNNRANSSILQKIYREIDRDKLEVDVQLWNDIIVGF 281
Query: 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN 260
G DK F + + + +S T T+I G + EA F+E++D+ L P
Sbjct: 282 AKAGDLDKALE-FLGVVQGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPR 340
Query: 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK--- 317
YN L+ GY+ A + E + M+ V+P+ TY LL+ Y GN R E
Sbjct: 341 TRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTYSLLIDAY---GNAERWESARI 397
Query: 318 -IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP---WLNVLL 373
+ E+ +V + R + K +K ++R + + RP + NV L
Sbjct: 398 VLKEMEASNVQPNAYVFSRILASYRDK----GEWQKTFQVLREMEDSGVRPDRIFYNV-L 452
Query: 374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433
I + K +CL+ + + T+ +V + + D+ + G
Sbjct: 453 IDTFGKFNCLDHAMATFDRMLSEGIEPDTI-TWNTLVDCHCKAGKHDRAEELFEEMMEKG 511
Query: 434 WRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVN 493
+ C + ++ + + Q R ++++++L M + + + T+ + Y G+
Sbjct: 512 YLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAI 571
Query: 494 QVLGLMCKNG-------YDVPVNAF 511
+ L M G Y+ +NA+
Sbjct: 572 ECLDDMKAAGLKPSSTMYNALLNAY 596
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLK 217
YT I G+ D A + + LK T YNALL AY GLSD+ S F ++
Sbjct: 554 YTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMR 613
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + PS++ N+LI+ FG+ Q +K+++L P+V TY L+ + +
Sbjct: 614 DDG-LKPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKALILVEKF 672
Query: 278 GKVEEIYQMMKAGPVMPD 295
KV +Y+ M PD
Sbjct: 673 DKVPSVYEEMILSGCTPD 690
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 4/154 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDL 216
Y I G+ N +D A F ++ ++ TI T+N L+ + G D+ + LF ++
Sbjct: 449 YNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTI-TWNTLVDCHCKAGKHDRAEELFEEM 507
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
++ + P T+N +I+ FG D ++ ++ L PN TY LI Y +
Sbjct: 508 MEKGYL-PCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGR 566
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ E MKA + P + Y LL YA G
Sbjct: 567 FDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRG 600
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ Y +G D D+K A + PS YN L++ + + L D +AF
Sbjct: 553 TYTTLIDIYGKSGRFDDAIECLDDMKA-AGLKPSSTMYNALLNAYAQRGLSDQAVSAFWA 611
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++D L P++ N LI + + + Q MK + PD TY L++
Sbjct: 612 MRDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKALILVEK 671
Query: 312 LPRMEKIYE 320
++ +YE
Sbjct: 672 FDKVPSVYE 680
>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Brachypodium distachyon]
Length = 800
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/339 (21%), Positives = 134/339 (39%), Gaps = 49/339 (14%)
Query: 163 IKFAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK--E 219
I GR VD A F + ++ H+ + TYNALL + G + R LK+ E
Sbjct: 265 IAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVF---GKAGNYMEALRVLKEMEE 321
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
+ P VTYN L + R + + + PN FTYN ++ Y A GK
Sbjct: 322 SGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYGNA---GK 378
Query: 280 VEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336
V+E ++ MK +P NTY L+L G L + + F ++
Sbjct: 379 VDEALALFDWMKKNGFIPYVNTYNLIL------GMLGKKSR-------------FNVMLE 419
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396
M+ S+ T ++ + ++ ++ +L R+ + C E+ D F
Sbjct: 420 MLGEMSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERM---KSCGVEL---CRDTFN- 472
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
++S+Y RC + +AG+ C + Y++ + + + Q
Sbjct: 473 -----------TLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTA 521
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQV 495
+S++ +M+N + ++ ++ +A G + +
Sbjct: 522 AQSIINKMKNEGFKPNDMSYSLLLQCHAKGGNAAGIEAI 560
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
A H + +N++L Y NG+ K +F D K+ +SP ++TYN+++ ++ +
Sbjct: 601 ARGHKPDLVIFNSMLSMYAKNGMYRKAGEMF-DSIKQGGLSPDLITYNSMMDMYAKSNES 659
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
E + +K S L P+V +YN ++ G+ + + + I M A V P TY L
Sbjct: 660 WEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADGVRPCVVTYHTL 719
Query: 303 LRGYA 307
+ GYA
Sbjct: 720 VGGYA 724
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 122/278 (43%), Gaps = 12/278 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ AY G D+ +LF +KK I P + TYN ++ + G+ + M E
Sbjct: 365 TYNTIMTAYGNAGKVDEALALFDWMKKNGFI-PYVNTYNLILGMLGKKSRFNVMLEMLGE 423
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ S +PN T+N ++A M G V + + MK+ V +T+ L+ Y G+
Sbjct: 424 MSRSGCTPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLISAYGRCGS 483
Query: 312 LPRMEKIYELVKHHVDGKEF-PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--W 368
K+Y+ + F P + S S ++++ + + ++P
Sbjct: 484 RANAFKMYD----EMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPNDM 539
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
LL++ +AK +E + +E + V I+R +V S F+C ++ + +
Sbjct: 540 SYSLLLQCHAKGGNAAGIEAIEKEVYEGTVFPSWV-ILRTLVISNFKCRRLEGIERAFQE 598
Query: 429 AESAGWRLCRSLYHSKMVMYASQ---RRVEEMESVLKE 463
+ G + +++S + MYA R+ EM +K+
Sbjct: 599 VMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQ 636
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 114/276 (41%), Gaps = 45/276 (16%)
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
T+NTLIS +GR + + E+ + +P + TYN L++ W + I M
Sbjct: 470 TFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKM 529
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKC 344
K P+ +Y LLL+ +A GN +E I K +G FP ++R ++ + KC
Sbjct: 530 KNEGFKPNDMSYSLLLQCHAKGGNAAGIEAIE---KEVYEGTVFPSWVILRTLVISNFKC 586
Query: 345 SVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKE---------------------- 380
R++ IE + + + ++P L + ++ +YAK
Sbjct: 587 R---RLEGIERAFQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDL 643
Query: 381 ---DCLEEMEKSINDAFEHKTSVTTVRIMR---------CIVSSYFRCNAVDKLANFVKR 428
+ + +M N+++E + + ++ + +++ + + + + +
Sbjct: 644 ITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSE 703
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
+ G R C YH+ + YAS+ E V+ M
Sbjct: 704 MIADGVRPCVVTYHTLVGGYASREMFSEAREVVSYM 739
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 104/237 (43%), Gaps = 7/237 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y+ LL + G + +++ +++ E + PS V TL+ + ++ +E AFQE
Sbjct: 540 SYSLLLQCHAKGGNAAGIEAIEKEVY-EGTVFPSWVILRTLVISNFKCRRLEGIERAFQE 598
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ P++ +N +++ Y M+ K E++ +K G + PD TY ++ YA S
Sbjct: 599 VMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNE 658
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
EKI + +K + ++ + K + IK+ + ++ + RP +
Sbjct: 659 SWEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGL---IKEAQRILSEMIADGVRPCVVT 715
Query: 372 --LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L+ YA + E + ++ + S + R +V SY + D+ F+
Sbjct: 716 YHTLVGGYASREMFSEAREVVSYMIQRNLSPMELTYRR-VVDSYCKAKRFDEARGFL 771
>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+ VD A +L E K L+ I TYN+L+ G D+ L +D++ A P
Sbjct: 375 KCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEV-AGFHPDA 433
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTY TL+ + + + +++ D L P V T+N L+ G+ + M E++ +
Sbjct: 434 VTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKW 493
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
M +MP+ TY L++ Y N+ +IY
Sbjct: 494 MLEKGIMPNATTYNSLIKQYCIRNNMRATTEIY 526
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 5/159 (3%)
Query: 155 TKEEYTKGIKFAGRINN-VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLF 213
T G+ AG I+ V L D+ E A H + TY L+ AY + + L
Sbjct: 400 TYNSLVNGLCKAGNIDQAVKLMKDM--EVAGFHPDAV-TYTTLMDAYCKSREMVRAHELL 456
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
R + + + P++VT+N L++ F +++ E + + + + PN TYN LI Y
Sbjct: 457 RQML-DRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCI 515
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
EIY+ M A V+PD NTY +L++G+ + N+
Sbjct: 516 RNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNM 554
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 88/207 (42%), Gaps = 8/207 (3%)
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G+ GR+ D LF E K L+ TY AL+ Y G + SL + +
Sbjct: 302 GLCQTGRVMEAD---KLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQML-QM 357
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
++P+IVTY L + VD E+ L N++TYN L+ G A +
Sbjct: 358 GLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQA 417
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340
++ + M+ PD TY L+ Y S + R +EL++ +D + P +
Sbjct: 418 VKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRA---HELLRQMLDRELQPTVVTFNVL 474
Query: 341 YSKCSVTDRIKKIEALMRLIPEKEYRP 367
+ ++ ++ E L++ + EK P
Sbjct: 475 MNGFCMSGMLEDGEKLLKWMLEKGIMP 501
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/315 (20%), Positives = 120/315 (38%), Gaps = 44/315 (13%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ G + + + R++ E I+P V Y TLI F +L V F E
Sbjct: 225 TYNGVILLLCKTGKVAEAERVLREMISEG-IAPDGVIYTTLIDGFCKLGNVSSAYRLFDE 283
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ +SP+ TY +I G + ++++ M + PD TY L+ GY G
Sbjct: 284 MQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEG- 342
Query: 312 LPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+M++ + L + P I A+ KC D ++
Sbjct: 343 --KMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANEL--------------- 385
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
E C + +E +I + + + +V+ + +D+ +K
Sbjct: 386 ---------LHEMCRKGLELNI---YTYNS----------LVNGLCKAGNIDQAVKLMKD 423
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
E AG+ Y + M Y R + +L++M + ++ + TF ++ + G
Sbjct: 424 MEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGM 483
Query: 489 RRKVNQVLGLMCKNG 503
++L M + G
Sbjct: 484 LEDGEKLLKWMLEKG 498
>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Glycine max]
Length = 852
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 113/268 (42%), Gaps = 35/268 (13%)
Query: 47 TRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVL 106
TR++C P VF TL +L + +AR Q + FRVL
Sbjct: 173 TRNVCRPG-FGVFDTLFNVLVDLGMLEEAR------QCFWKMNK------------FRVL 213
Query: 107 DEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFA 166
+ SC EL+ +L + L L++ + G + Y I
Sbjct: 214 PKVRSC-----------NELLHRLSKSSKGGL-ALSFFKDMVVAGLSPSVFTYNMVIGCL 261
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
R +++ A LF E K L+ I TYN+L+ Y G+ S+F ++K +A P
Sbjct: 262 AREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMK-DAGCEPD 320
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY- 284
++TYN+LI+ F + + +K L PNV TY+ LI + A M + + +
Sbjct: 321 VITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFV 380
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
M++ G + P+ TY L+ G+L
Sbjct: 381 DMIRVG-LQPNEFTYTSLIDANCKIGDL 407
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 107/265 (40%), Gaps = 11/265 (4%)
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
S F+D+ A +SPS+ TYN +I R ++ + F+E+K L P++ TYN LI G
Sbjct: 237 SFFKDMVV-AGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDG 295
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
Y M +++ MK PD TY L+ + +P+ + +K
Sbjct: 296 YGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPN 355
Query: 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE---ME 387
+I A+ K + K M + + + LI K L E +E
Sbjct: 356 VVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQP-NEFTYTSLIDANCKIGDLNEAFKLE 414
Query: 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVM 447
+ A + VT ++ + A + +K AGW L + +Y S
Sbjct: 415 SEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLK----AGWTLNQQIYTSLFHG 470
Query: 448 YASQRRVEEMESVLKEM--ENYKID 470
Y + +E+ +L+EM +N K D
Sbjct: 471 YIKAKMMEKAMDILEEMNKKNLKPD 495
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y L+ AY G + + +L ++++ + I ++VTY LI ++ LV F +
Sbjct: 534 YTTLIDAYFKVGKTTEAVNLLQEMQ-DLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHM 592
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ L PN+ Y LI G + + ++ M + PD Y L+ G GN
Sbjct: 593 TRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGN 651
>gi|147862853|emb|CAN80932.1| hypothetical protein VITISV_017362 [Vitis vinifera]
Length = 1697
Score = 64.7 bits (156), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 69/134 (51%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K + PS+ YN +I F R D E+K +NL + TY+ LI Y M+
Sbjct: 1431 KTHGLKPSLEIYNLVIHCFARKGEFDRALYFLNELKXNNLIADTETYDGLIQSYGKYKMY 1490
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+++E + M++ +PD TY LL++ ++ G L RME++++ V G + + M
Sbjct: 1491 DELDECVKKMESDGCLPDHITYNLLIQEFSRGGLLKRMERVFQTVLSKKMGLQSSTLVVM 1550
Query: 338 ICAYSKCSVTDRIK 351
+ AY+ + ++++
Sbjct: 1551 LEAYANFGIIEKME 1564
Score = 58.9 bits (141), Expect = 6e-06, Method: Composition-based stats.
Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 5/182 (2%)
Query: 164 KFAGRINNVDLAAD--LFAEAANKH-LK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219
K G ++ DLA + L E H LK ++ YN ++ + G D+ +LK
Sbjct: 1409 KIIGLLSQEDLAEESVLALEXMKTHGLKPSLEIYNLVIHCFARKGEFDRALYFLNELKXN 1468
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
N+ TY+ LI +G+ + D ++ ++++ P+ TYN LI + + +
Sbjct: 1469 -NLIADTETYDGLIQSYGKYKMYDELDECVKKMESDGCLPDHITYNLLIQEFSRGGLLKR 1527
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
+E ++Q + + + ++T +++L YA+ G + +ME Y V + + LIR +
Sbjct: 1528 MERVFQTVLSKKMGLQSSTLVVMLEAYANFGIIEKMENAYRRVLNSKTSLKDDLIRKLAE 1587
Query: 340 AY 341
Y
Sbjct: 1588 VY 1589
>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 116/536 (21%), Positives = 205/536 (38%), Gaps = 83/536 (15%)
Query: 24 SSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETL--TYPDARVRKDL 81
+S P LP L P+ S + D P V LL ++L ++ D+
Sbjct: 46 TSSPDDLPGLV------DPDQSLSSD--TSRVQCFSPQEVSLLRDSLLDSHADSCSSHRT 97
Query: 82 TQTVSALRDELLA-----NVDDL--DKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRP 134
QTV + L N DD +K VL + FR+ N VE++ L S P
Sbjct: 98 LQTVKISNEAFLILDAVRNCDDGFGEKTHIVLRQ-----FRQKLNPDLVVEILSFLKS-P 151
Query: 135 RLALEVLNWRRRQAGYG-TPMT----------------KEEYTKGIK-----FAGRINNV 172
L ++ W RQ GY TP EE+ + I+ G++ NV
Sbjct: 152 ELCVKFFLWAGRQIGYDHTPAVYIALLDVFERGSYDRVPEEFLREIRGDDKEVLGKLLNV 211
Query: 173 DLAADLFAEAANKHLKTIG------------TYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
+ N L+ +G TYNAL+ ++ D Q + R++ E
Sbjct: 212 LIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMS-EL 270
Query: 221 NISPSIVTYNTLISVFGRLLL-VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
+S T + F + L V A I+ + PN YN +I+G A + +
Sbjct: 271 GLSMDEFT----LGFFAQALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEE 326
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
+ M++ +P+ TY +LL G + L R ++I ++ + + +++
Sbjct: 327 AMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVH 386
Query: 340 AYSKCSVTDRIKKIEALMRLIPEKEYRPW---LNVLLIRVYAKED-----CLEEMEKSIN 391
AY K +D L++ + + E +P N+L+ + + + E EK+ N
Sbjct: 387 AYCK---SDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYN 443
Query: 392 DAFEHKTSVTTVRIMRCIVSSYFRC----NAVDKLANFVKRAESAGWRLCRSLYHSKMVM 447
+ T + V ++ S+ RC +K + G+ S Y +
Sbjct: 444 EMLSAGTVLNKVNVV-----SFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGF 498
Query: 448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ RVE + KEM+ + T+ I+ ++ G ++ + L M ++G
Sbjct: 499 LCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDG 554
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 1/145 (0%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
N + TY+ ++G + LF+++K + P + TY LI F + ++
Sbjct: 482 GNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKG-TGVVPDVYTYTILIDCFSKAGII 540
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
E+ P V TY LI Y+ A E++++M A P+ TY L
Sbjct: 541 KQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTAL 600
Query: 303 LRGYAHSGNLPRMEKIYELVKHHVD 327
+ GY SGN+ + +IY ++ D
Sbjct: 601 IDGYCKSGNIEKACQIYARMRGDAD 625
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 2/165 (1%)
Query: 149 GYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSD 207
G G Y++ I F + V+ A LF E + + TY L+ + G+
Sbjct: 482 GNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIK 541
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+ + ++ ++ P++VTY TLI + + V F+ + PNV TY L
Sbjct: 542 QAHNWLDEMVRDG-CEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTAL 600
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
I GY + K +IY M+ +PD + Y + A N+
Sbjct: 601 IDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNV 645
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 14/137 (10%)
Query: 199 AYMYNGLSDKCQSLFRD---------LKK--EANISPSIVTYNTLISVFGRLLLVDHMEA 247
Y Y+ L D+ LF+D L K E + +P+IV Y +I ++ D
Sbjct: 715 VYTYSSLIDR---LFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYK 771
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
+++ PNV TY +I G+ A K E+++ M + P+ TY +L+
Sbjct: 772 LMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCC 831
Query: 308 HSGNLPRMEKIYELVKH 324
+G+L + E +K
Sbjct: 832 ATGHLDEAYALLEEMKQ 848
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 80/186 (43%), Gaps = 7/186 (3%)
Query: 173 DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
DL +F + + TI Y+AL+ + D+ Q +F + E +P++ TY++L
Sbjct: 666 DLLETMFVDGCEPN--TI-VYDALIDGFCKAAKLDEAQEVFHKMV-EHGYNPNVYTYSSL 721
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I + +D + ++ +++ +PN+ Y +I G + ++ MM+
Sbjct: 722 IDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGC 781
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352
P+ TY ++ G+ +G +++K EL + P + C T + +
Sbjct: 782 KPNVVTYTAMIDGFGKAG---KVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDE 838
Query: 353 IEALMR 358
AL+
Sbjct: 839 AYALLE 844
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 77/386 (19%), Positives = 149/386 (38%), Gaps = 62/386 (16%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFA-EAANKHLKTI 190
S+ + + NW G T YT I + V +A +LF A +
Sbjct: 535 SKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNV 594
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TY AL+ Y +G +K ++ ++ +A+I P + Y F+
Sbjct: 595 ITYTALIDGYCKSGNIEKACQIYARMRGDADI-PDVDMY-------------------FK 634
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ PNV TY L+ G A ++ + M P+T Y L+ G+ +
Sbjct: 635 IKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAA 694
Query: 311 NLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRI---KKIEALMRLIP---EK 363
L ++++ ++V+H + Y+ S+ DR+ K+++ +++++ E
Sbjct: 695 KLDEAQEVFHKMVEHGYNPN----------VYTYSSLIDRLFKDKRLDLVLKVLSKMLEN 744
Query: 364 EYRPWLNVLLIRVYAKE-DCLEEMEKSINDAF------EHKTSVTTVRIMRCIVSSYFRC 416
P I +Y + D L ++ K+ ++A+ E K V ++ + +
Sbjct: 745 SCAPN-----IVIYTEMIDGLSKVAKT-DEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKA 798
Query: 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476
VDK + S G Y + + ++E ++L+EM K+T+
Sbjct: 799 GKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEM--------KQTY 850
Query: 477 W---IMYYAYATCGQRRKVNQVLGLM 499
W + Y G +R+ LGL+
Sbjct: 851 WPKHVSSYCKVIEGYKREFILSLGLL 876
>gi|410110087|gb|AFV61123.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
urticoides]
Length = 423
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 123 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 181
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN +I Y K + Q M++ +
Sbjct: 182 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIE 241
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 242 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 301
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 56/296 (18%), Positives = 118/296 (39%), Gaps = 3/296 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 1 TYSTLITHFGKEGLFDAALSWLQKMEQD-QVPGDLVLYSNLIELSRKLCDYSKAISIFSR 59
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S +P++ YN +I + A ++ + + MK VMP+T +Y LL Y +
Sbjct: 60 LKSSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKK 119
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 120 FLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 179
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
LL RVY + E + + K V ++ Y + +K N ++ +S
Sbjct: 180 LL-RVYGDAELFGE-AIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQS 237
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
G Y + + ++ +++ + +++ + ++ + F M AY G
Sbjct: 238 RGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAG 293
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 110/244 (45%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 187 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG-IEPN 243
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + + +I Y A + + +
Sbjct: 244 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLH 303
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P DT ++L G R+E+ + + +D K+ + MI
Sbjct: 304 ELKRPDNIPRDTAIHILAGAG--------RIEEATYVFRQAIDAGEVKDITVFERMIHLL 355
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTS 399
SK + ++ MR + Y P NV+ ++ Y K L+E +K+ ND +
Sbjct: 356 SKYKKYSNVVEVFDKMRGLG---YFPDSNVIAVVLNAYGK---LQEFDKA-NDVYMEMQE 408
Query: 400 VTTV 403
V V
Sbjct: 409 VGCV 412
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 109/262 (41%), Gaps = 11/262 (4%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK + +P +V YN +I+VFG+ L + E+K + + PN +Y+ L
Sbjct: 52 KAISIFSRLKS-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 110
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + ++ M+ + D T +++ Y G +K++ ++
Sbjct: 111 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 170
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCL 383
++ Y + + L RL+ K NV+ +I +Y K
Sbjct: 171 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMIMIYGKTLEH 225
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
E+ I + ++ I+S + + +D+ A ++ S+G + + L+ +
Sbjct: 226 EKANNLIQEMQSRGIEPNSI-TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 284
Query: 444 KMVMYASQRRVEEMESVLKEME 465
+V Y V + +L E++
Sbjct: 285 MIVAYERAGLVAHAKRLLHELK 306
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 12/223 (5%)
Query: 168 RINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R+ ++D A +L + + + TYN ++ D LF+++++ + P +
Sbjct: 161 RVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDV 220
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TY+T++ + VD + + SPNV TY+ L+ G A + + Q
Sbjct: 221 FTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQR 280
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSK 343
M P+ TY ++ G+ G R+++ Y L++ VDG P + ++ A+ K
Sbjct: 281 MTRSGCSPNIVTYNTIIDGHCKLG---RIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCK 337
Query: 344 CSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLE 384
C + + L+ ++ EK Y P L L+ ++ K+D +E
Sbjct: 338 CG---KAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVE 377
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 1/152 (0%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
VD+A +LF + TYN+L+ + D+ + L R++ ++ SP I+TYN
Sbjct: 446 VDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYN 505
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
T+I + VD F ++ L+P+ TY+ +I+ + + ++M
Sbjct: 506 TVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKN 565
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
P TY L+ G+ +GNL + +I +L+
Sbjct: 566 GFDPGAITYGTLIDGFCKTGNLDKALEILQLL 597
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 75/337 (22%), Positives = 143/337 (42%), Gaps = 53/337 (15%)
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
FR++ K P VTYNT+I+ + +D +E+ D+ +PNVF+YN ++ G+
Sbjct: 33 FREMSKTC--PPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFC 90
Query: 273 TAWMWGKVEE----IYQM-MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
A +VE + QM M+ P PD +Y ++ G + ++ + +
Sbjct: 91 KA---NRVENALWLLEQMVMRGCP--PDVVSYTTVINGLCKLDQVDEACRVMDKMIQR-- 143
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP----WLNVLLIRVYAKE--- 380
G + +I C V D +E L+R + E+ YRP + N++ ++
Sbjct: 144 GCQPNVITYGTLVDGFCRVGDLDGAVE-LVRKMTERGYRPNAITYNNIMHGLCSGRKLDS 202
Query: 381 --DCLEEMEKSIN---DAFEHKTSVTTV----------RIMRCIVSSYFRCNAV------ 419
+EME+S + D F + T V ++ R++ +VS N V
Sbjct: 203 ALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLL 262
Query: 420 ---------DKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKID 470
D+ ++R +G Y++ + + R++E +L+EM +
Sbjct: 263 HGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQ 322
Query: 471 CSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVP 507
+ T+ ++ A+ CG+ ++ +M + GY VP
Sbjct: 323 PNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGY-VP 358
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
N P IVT+NT+I + VD F I++S +PN+ TYN L+ G + + +
Sbjct: 425 NCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQA 484
Query: 281 EEIY-QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
E + +M + PD TY ++ G S + R K++
Sbjct: 485 EYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLF 524
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN ++ + D+ LF + + ++P VTY+ +IS + +D
Sbjct: 501 IITYNTVIDGLCKSKRVDRAYKLFLQMLSDG-LAPDDVTYSIVISSLCKWRFMDEANNVL 559
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + + P TY LI G+ K EI Q++ + PD T+ + + +
Sbjct: 560 ELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKR 619
Query: 310 GNLPRMEKIYE 320
G L + ++ E
Sbjct: 620 GRLRQAGELLE 630
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+LL + ++ L + ++ + P++V+YNT+I+ + V ++
Sbjct: 362 TYNSLLDMFCKKDEVERACQLLSSMIQKGCV-PNVVSYNTVIAGLCKATKVHEGVLLLEQ 420
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +N P++ T+N +I + E++ +++ P+ TY L+ G S
Sbjct: 421 MLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRR 480
Query: 312 LPRME 316
+ E
Sbjct: 481 FDQAE 485
>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 106/248 (42%), Gaps = 7/248 (2%)
Query: 113 LFRRHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN 170
LFR N Y+ L+ L + ++ VL + + +T G+ G+I
Sbjct: 121 LFRVTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIK 180
Query: 171 NVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
A +LF E + H + +Y ++ G + +F+ +++ P++VTY
Sbjct: 181 E---AVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNG-CKPNVVTY 236
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
+T+I + LV+ E+ + + PNVFTYN ++ G+ + +++ M
Sbjct: 237 STIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVG 296
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
VMP+T T+ +L+ G G + ++E + + A++ Y + +
Sbjct: 297 RDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNE 356
Query: 350 IKKIEALM 357
KK+ +M
Sbjct: 357 AKKVFEIM 364
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 5/162 (3%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
+D A L AE +K L TY+ L+ G + +LF+++ P++VTY
Sbjct: 389 MDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGP-HPNLVTYV 447
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
L+ F + +D + +K+ L PN+ Y LI G A +E++ +
Sbjct: 448 ILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGD 507
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
PD TY ++++G G ++ Y+L + D P
Sbjct: 508 GTRPDIRTYTVMIKGLLKEG---LSDEAYDLFRKMEDDGFLP 546
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 115/255 (45%), Gaps = 31/255 (12%)
Query: 64 RLLSETLTYPDARVRKDLTQTVSALRDE--LLANVDDLDKVFRVLDEKGSCLFRRHS--- 118
RL+ ET+T + V D++ T +AL D L +++ KVF ++ KG C HS
Sbjct: 323 RLVFETMT--EKGVEPDIS-TYNALMDGYCLQRLMNEAKKVFEIMIRKG-CAPGAHSYNI 378
Query: 119 --NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAA 176
NGY M + A +L +A +T +G+ GR A
Sbjct: 379 LINGYCKSRRMDE-------AKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKE---AL 428
Query: 177 DLFAEAAN--KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234
+LF E + H + TY LL + +G D+ L + +K E + P+IV Y LI
Sbjct: 429 NLFKEMCSYGPHPNLV-TYVILLDGFCKHGHLDEALKLLKSMK-EKKLEPNIVHYTILIE 486
Query: 235 VFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
+ + +E A F ++ P++ TY +I G + + + ++++ M+
Sbjct: 487 ---GMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDG 543
Query: 292 VMPDTNTYLLLLRGY 306
+P++ +Y ++++G+
Sbjct: 544 FLPNSCSYNVMIQGF 558
>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
Length = 514
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 2/152 (1%)
Query: 170 NNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
N VD A DLF ++T + TYN L+G ++ G + + ++ ++ + I PS VT
Sbjct: 315 NKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKG-IIPSTVT 373
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN+++ F + ++ + SP+V T++ LI GY A E++ M
Sbjct: 374 YNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMC 433
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
++ DT TY L+ G+ G+L + I+E
Sbjct: 434 QRGLVADTITYNALIHGFCKVGDLNGAQDIFE 465
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/348 (20%), Positives = 141/348 (40%), Gaps = 29/348 (8%)
Query: 175 AADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A ++F E K + + TYN ++ Y G + L RD+ E NI P +VT++ LI
Sbjct: 99 AQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMI-ERNIDPDVVTFSALI 157
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F + V E ++E+ N+ P TY+ +I G+ + ++ +M +
Sbjct: 158 NAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCS 217
Query: 294 PDT---NTYL--------LLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAY 341
PD NT + L+ G+ GN+ + ++ E++ + V P I + C
Sbjct: 218 PDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVS----PDI--VTCNT 271
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT 401
+ + K +AL ++ + L+ + C +++A++ S+
Sbjct: 272 LLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMC---KGNKVDEAWDLFNSLP 328
Query: 402 TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL------YHSKMVMYASQRRVE 455
+ +V+ K NF++ + LC+ + Y+S + + Q R+E
Sbjct: 329 VNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLE 388
Query: 456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
E ++ M + TF + Y G+ ++ MC+ G
Sbjct: 389 EARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRG 436
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 6/161 (3%)
Query: 175 AADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A D++ E K + + TYN+++ + ++ + + + E SP +VT++TLI
Sbjct: 355 AEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEG-CSPDVVTFSTLI 413
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ + VD F E+ L + TYN LI G+ ++I++ M + V
Sbjct: 414 KGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVC 473
Query: 294 PDTNTYLLLLRGYAHSGNLPR----MEKIYELVKHHVDGKE 330
PDT T+ +L G L + +E + + V H ++ E
Sbjct: 474 PDTITFRSMLAGLCTKAELQKGLTMLEDLQKSVDHELEDDE 514
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 5/160 (3%)
Query: 168 RINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
++ NV++A DLF E +N I T N LL NG +K +F+ +K + +
Sbjct: 243 QVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQK-SKMDLDT 301
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
T N +I+ + VD F + + + +V TYN LI ++ + + E+IY
Sbjct: 302 ATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLE 361
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326
M ++P T TY ++ G+ R+E+ ++V V
Sbjct: 362 MLCKGIIPSTVTYNSMVDGFCKQN---RLEEARQMVDSMV 398
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 89/191 (46%), Gaps = 19/191 (9%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA--F 249
TY ++ G + ++ R + E+ I ++V Y+ ++ + +H++A F
Sbjct: 47 TYGTIVNGMCKLGDTVSALNMLRKMD-ESQIKANVVIYSAIVDRLCKD--GNHIKAQNIF 103
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
E+ + + PNV TYN +I GY + W E++ + M + PD T+ L+ +
Sbjct: 104 TEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKE 163
Query: 310 GNLPRMEKIY-ELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALMRLIPEKEY 365
G + E++Y E+++ ++ FP +MI + K S R++ + + L+ K
Sbjct: 164 GKVSGAEELYREMLRRNI----FPTTITYSSMIDGFCKHS---RLEDAKHMFDLMVSKGC 216
Query: 366 RP---WLNVLL 373
P LN L+
Sbjct: 217 SPDIITLNTLI 227
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 90/206 (43%), Gaps = 3/206 (1%)
Query: 118 SNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAAD 177
+N F LM L R+ L+ L R G Y + ++ + A +
Sbjct: 8 ANVVTFTTLMNGLCREGRV-LQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALN 66
Query: 178 LFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
+ + +K + Y+A++ +G K Q++F ++ E I P+++TYN +I +
Sbjct: 67 MLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMH-EKGIFPNVLTYNCMIDGY 125
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
E +++ + N+ P+V T++ LI ++ EE+Y+ M + P T
Sbjct: 126 CSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTT 185
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELV 322
TY ++ G+ L + +++L+
Sbjct: 186 ITYSSMIDGFCKHSRLEDAKHMFDLM 211
>gi|255661192|gb|ACU25765.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 426
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-IGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ +++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERAGLVAHAKRL 311
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 102/237 (43%), Gaps = 52/237 (21%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN LL Y L + LFR L + NI ++VTYN+++ ++G+ L + QE
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFR-LMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 244
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE------IYQMMKAGPVMPDTNTYLLLLRG 305
+++ + PN TY+ +I+ +WGKV + ++Q ++ V D Y ++
Sbjct: 245 MQNRGIEPNSITYSTIIS------IWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVA 298
Query: 306 YAHSG----------------NLPRMEKIYELV------------KHHVDG---KEFPLI 334
Y +G N+PR I+ L + +D K+ +
Sbjct: 299 YERAGLVAHAKRLLHELKRPDNIPRDTAIHILAAAGRJEEATWVFRQAIDAGEVKDITVF 358
Query: 335 RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKS 389
+I +SK + ++ MR E+ Y P NV L++ Y K L E EK+
Sbjct: 359 ERLIHLFSKYKKYXNVVEVFDKMR---ERRYFPDSNVIALVLNAYGK---LHEFEKA 409
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/308 (19%), Positives = 123/308 (39%), Gaps = 36/308 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 11 TYSTLITHFGKEGLFDAALSWLQKMEQD-RVPGDLVLYSNLIELSRKLCDYSKAISIFSR 69
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S +P++ YN +I + A ++ + + M+ VMPDT +Y LL + +
Sbjct: 70 LKRSGFAPDLVAYNSMINVFGKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHVENKR 129
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR I + N
Sbjct: 130 FLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVSYNT 189
Query: 372 LLIRVYAKEDCLEE------------MEKSI----------NDAFEHKTSVTTVRIMR-- 407
LL RVY + E +E+++ EH+ + ++ M+
Sbjct: 190 LL-RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNR 248
Query: 408 ----------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
I+S + + +D+ A ++ ++G + + LY + +V Y V
Sbjct: 249 GIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERAGLVAHA 308
Query: 458 ESVLKEME 465
+ +L E++
Sbjct: 309 KRLLHELK 316
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I G++ +D AA LF + N ++ Y ++ AY GL + L +LK
Sbjct: 257 YSTIISIWGKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELK 316
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ NI + +++ GRJ + F++ D+ ++ + LI + +
Sbjct: 317 RPDNIPRDTAIH--ILAAAGRJ---EEATWVFRQAIDAGEVKDITVFERLIHLFSKYKKY 371
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
V E++ M+ PD+N L+L Y G L EK
Sbjct: 372 XNVVEVFDKMRERRYFPDSNVIALVLNAY---GKLHEFEK 408
>gi|242043154|ref|XP_002459448.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
gi|241922825|gb|EER95969.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
Length = 316
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 102/251 (40%), Gaps = 28/251 (11%)
Query: 127 MKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA--- 183
M Q G +P A +R GY T G + +++ DL +
Sbjct: 36 MIQSGQKPNAA----TYRSLLHGYAT-------------EGNLVDMNNVKDLMVQNGMRP 78
Query: 184 NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
++H+ I Y AY G D+ F ++ + P IVTY T+I ++ +D
Sbjct: 79 DRHVFNIEIY-----AYCKCGRLDEASLTFNKMQ-QLGFMPDIVTYTTVIDGLCKIGRLD 132
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI-YQMMKAGPVMPDTNTYLLL 302
+ F ++ D LSPN+ T+ LI G+ W K EE+ Y+MM G + P+ NT+ +
Sbjct: 133 DAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRG-IPPNVNTFNSM 191
Query: 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE 362
+ G + K+++L+ MI Y + K+ M LI
Sbjct: 192 IDRLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGL 251
Query: 363 KEYRPWLNVLL 373
K LN LL
Sbjct: 252 KPNAVNLNTLL 262
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 21/201 (10%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I +I +D A F + + L I T+ L+ + G +K + LF ++
Sbjct: 118 YTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMM 177
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
I P++ T+N++I + V F + + PNV +YN +I GY A
Sbjct: 178 DRG-IPPNVNTFNSMIDRLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEV 236
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
G+V ++ M + P+ LL G G P ++ L+
Sbjct: 237 GEVMKLLDDMLLIGLKPNAVNLNTLLDGMLSIGLKPNVDTCKTLI--------------- 281
Query: 338 ICAYSKCSVTDRIKKIEALMR 358
C DRI+ I L R
Sbjct: 282 ----DSCCEDDRIEDILTLFR 298
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%)
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
PNV TY+ LI + + + EI+ M P+ TY LL GYA GNL M
Sbjct: 7 GPNVVTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGNLVDMNN 66
Query: 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
+ +L+ + + + I AY KC D
Sbjct: 67 VKDLMVQNGMRPDRHVFNIEIYAYCKCGRLDE 98
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%)
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
P++VTY+ LI+ + L F + S PN TY L+ GY T +
Sbjct: 7 GPNVVTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGNLVDMNN 66
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ +M + PD + + + + Y G L
Sbjct: 67 VKDLMVQNGMRPDRHVFNIEIYAYCKCGRL 96
>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 16/203 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEA-NISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
+YN LL S + L + + + + P +V+Y T+I+ F + +D +
Sbjct: 164 SYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYH 223
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+ D + PNV TYN +IA A K E+ M VMP+ TY ++ GY SG
Sbjct: 224 EMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSG 283
Query: 311 NLPRMEKIYELVKHHVDGKE-----FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY 365
P+ E I L K H DG E + + +C +C T+ K +++ + +
Sbjct: 284 Q-PK-EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRC--TEARKMFDSMTK----RGL 335
Query: 366 RPWLNV--LLIRVYAKEDCLEEM 386
+P + L++ YA + L EM
Sbjct: 336 KPEITTYGTLLQGYATKGALVEM 358
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TY+ L+ Y G D+ L + + P VTYNTLI+ + ++ ++ F
Sbjct: 514 IITYSTLIDGYCLAGKMDEATKLLASMVS-VGMKPDCVTYNTLINGYCKISRMEDALVLF 572
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+E++ S +SP++ TYN ++ G +E+Y + + +TY ++L G
Sbjct: 573 REMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHG 628
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
++ L+ AY G D+ +F ++++ ++P VTY T+I + + V+ F+++
Sbjct: 377 FSILICAYAKQGKVDQAMLVFSKMRQQG-LNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
D LSP YN LI W K +E I +M+ G + DT + ++ + G
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICL-DTIFFNSIIDSHCKEGR 494
Query: 312 LPRMEKIYELV 322
+ EK+++L+
Sbjct: 495 VIESEKLFDLM 505
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 90/266 (33%), Gaps = 45/266 (16%)
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM--KAGPVMPDTNTYL 300
D M+ + + PNVF+YN L+ G + E+ QMM G PD +Y
Sbjct: 144 DAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYT 203
Query: 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALM 357
++ G+ G+L +K Y +D P + ++I A K D K +E L
Sbjct: 204 TVINGFFKEGDL---DKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMD--KAMEVLT 258
Query: 358 RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN 417
++ + R IV Y
Sbjct: 259 SMV-----------------------------------KNGVMPNCRTYNSIVHGYCSSG 283
Query: 418 AVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW 477
+ F+K+ S G Y+S M R E + M + T+
Sbjct: 284 QPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYG 343
Query: 478 IMYYAYATCGQRRKVNQVLGLMCKNG 503
+ YAT G +++ +L LM +NG
Sbjct: 344 TLLQGYATKGALVEMHGLLDLMVRNG 369
>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ T+N L+ Y G + + + E ++P VTYNT++ + + ++
Sbjct: 204 VQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELL 263
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
++K + L PN TYN L+ GY + +I ++MK V+PD TY +L+ G ++
Sbjct: 264 LDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNA 323
Query: 310 GNL 312
G++
Sbjct: 324 GSM 326
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 133/317 (41%), Gaps = 28/317 (8%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN +L A G + L D+KK + P+ VTYN L+ + +L ++ AFQ
Sbjct: 242 TYNTILKAMSKKGRLSDLKELLLDMKKNG-LVPNRVTYNNLVYGYCKL---GSLKEAFQI 297
Query: 252 I---KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ K +N+ P++ TYN LI G A + E+ MK+ + PD TY L+ G
Sbjct: 298 VELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFE 357
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G K+ E +++ DG + + I C R + L+ + P
Sbjct: 358 LGLSLEARKLMEQMEN--DGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPD 415
Query: 369 LNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
+ LI+ Y K L + + + + + T+ + I+ + + +D+ N +
Sbjct: 416 IVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTI-TLNTILDALCKERKLDEAHNLL 474
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
A G+ + Y + ++ + + +VE+ + EM+ KI + TF
Sbjct: 475 NSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTF---------- 524
Query: 487 GQRRKVNQVLGLMCKNG 503
N ++G +C +G
Sbjct: 525 ------NSLIGGLCHHG 535
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 9/178 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ + +K ++ ++KK I+P++ T+N+LI + F E
Sbjct: 488 TYGTLIMGFFREEKVEKALEMWDEMKK-VKITPTVSTFNSLIGGLCHHGKTELAMEKFDE 546
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +S L P+ T+N +I GY K E Y PD T +LL G G
Sbjct: 547 LAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEG- 605
Query: 312 LPRMEKIYELVKHHVDGKEFPLI--RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
EK ++ +E + MI A+ K ++K+ L+ + EK P
Sbjct: 606 --MTEKALNFFNTLIEEREVDTVTYNTMISAFCK---DKKLKEAYDLLSEMEEKGLEP 658
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T N LL G+++K + F L +E + VTYNT+IS F + + E
Sbjct: 593 TCNILLNGLCKEGMTEKALNFFNTLIEEREVD--TVTYNTMISAFCKDKKLKEAYDLLSE 650
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
+++ L P+ FTYN I+ M GK+ E +++K
Sbjct: 651 MEEKGLEPDRFTYNSFISLLMED---GKLSETDELLK 684
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 112/279 (40%), Gaps = 14/279 (5%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TY+ L+ AY+ G + R++ ++ I + +T NT++ + +D
Sbjct: 416 IVTYHTLIKAYLKVGDLSGALEMMREMGQKG-IKMNTITLNTILDALCKERKLDEAHNLL 474
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ TY LI G+ K E++ MK + P +T+ L+ G H
Sbjct: 475 NSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHH 534
Query: 310 GNLP-RMEKIYELVKHHV--DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
G MEK EL + + D F ++I Y K R++K + ++
Sbjct: 535 GKTELAMEKFDELAESGLLPDDSTF---NSIILGYCK---EGRVEKAFEFYNESIKHSFK 588
Query: 367 P--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
P + +L+ KE E+ N E + V TV ++S++ + + + +
Sbjct: 589 PDNYTCNILLNGLCKEGMTEKALNFFNTLIEER-EVDTV-TYNTMISAFCKDKKLKEAYD 646
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463
+ E G R Y+S + + ++ E + +LK+
Sbjct: 647 LLSEMEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKK 685
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL---LLVDHMEAAF 249
++ L AY++ G +F+ + + + P+++T NTL+ R + F
Sbjct: 134 FDIALSAYLHEGKPHVALQIFQKMIR-LKLKPNLLTCNTLLIGLVRYPSSFSISSAREVF 192
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE----IYQMMKAGPVMPDTNTYLLLLRG 305
++ +S NV T+N L+ GY + GK+E+ + +M+ V PD TY +L+
Sbjct: 193 DDMVKIGVSLNVQTFNVLVNGY---CLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKA 249
Query: 306 YAHSGNLPRMEKI 318
+ G L ++++
Sbjct: 250 MSKKGRLSDLKEL 262
>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 966
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
DK LF+++KK ++P + TY LI F + L++ ++ F E++ + SPNV TY
Sbjct: 469 DKAFLLFQEMKK-VGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTA 527
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
L+ Y+ + + +I+ M P+ TY L+ G +G + + ++Y
Sbjct: 528 LLHAYLKSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVY 580
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 172 VDLAADLFAE--AANKHLKTIGTYN---ALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+DLA ++ E A+ L I T N L G G +K + +++ ++ + P
Sbjct: 398 LDLAEKVYEEMLVASCVLNKINTANFARCLCGV----GKFEKAFQIVKEMMRKGFV-PDA 452
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TY +I+ + VD FQE+K ++P+V+TY LI + A + + + +
Sbjct: 453 STYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDE 512
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
M++ P+ TY LL Y S L + I+
Sbjct: 513 MRSAGCSPNVVTYTALLHAYLKSKQLYQANDIF 545
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLLLVDHMEAA 248
Y+AL+ + G D Q +F + K + PS+ TY +LI GRL L M+
Sbjct: 645 VYDALVDGFCKVGEIDSAQEVFLRMTKCGYL-PSVHTYTSLIDRMFKDGRLDLA--MKVL 701
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
Q +KDS +PNV TY ++ G K + +M+ P+ TY L+ G
Sbjct: 702 SQMLKDS-CNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGK 760
Query: 309 SGNL 312
+G +
Sbjct: 761 AGKV 764
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I + +DLA + ++ + TY A++ G ++K +L ++
Sbjct: 681 YTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLME 740
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
K+ SP++VTY LI G+ VD F ++K +PN TY LI
Sbjct: 741 KKG-CSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILI 790
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 62/160 (38%), Gaps = 13/160 (8%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218
Y I ++ I+ + A ++ +A + K IGT + + + + G K
Sbjct: 554 YPNAITYSALIDGLCKAGEI-QKACEVYAKLIGTSDNIESDFYFEG------------KD 600
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
ISP++VTY L++ + V + + PN Y+ L+ G+
Sbjct: 601 TDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEID 660
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
+E++ M +P +TY L+ G L K+
Sbjct: 661 SAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKV 700
>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
Length = 748
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+ VD A +L E K L+ I TYN+L+ G D+ L +D++ A P
Sbjct: 475 KCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEV-AGFHPDA 533
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTY TL+ + + + +++ D L P V T+N L+ G+ + M E++ +
Sbjct: 534 VTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKW 593
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
M +MP+ TY L++ Y N+ +IY
Sbjct: 594 MLEKGIMPNATTYNSLIKQYCIRNNMRATTEIY 626
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 5/159 (3%)
Query: 155 TKEEYTKGIKFAGRINN-VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLF 213
T G+ AG I+ V L D+ E A H + TY L+ AY + + L
Sbjct: 500 TYNSLVNGLCKAGNIDQAVKLMKDM--EVAGFHPDAV-TYTTLMDAYCKSREMVRAHELL 556
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
R + + + P++VT+N L++ F +++ E + + + + PN TYN LI Y
Sbjct: 557 RQML-DRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCI 615
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
EIY+ M A V+PD NTY +L++G+ + N+
Sbjct: 616 RNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNM 654
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 14/210 (6%)
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G+ GR+ D LF E K L+ TY AL+ Y G + SL + +
Sbjct: 402 GLCQTGRVMEAD---KLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQML-QM 457
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
++P+IVTY L + VD E+ L N++TYN L+ G A G +
Sbjct: 458 GLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKA---GNI 514
Query: 281 EEIYQMMKAGPVM---PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
++ ++MK V PD TY L+ Y S + R +EL++ +D + P +
Sbjct: 515 DQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRA---HELLRQMLDRELQPTVVTF 571
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
+ ++ ++ E L++ + EK P
Sbjct: 572 NVLMNGFCMSGMLEDGEKLLKWMLEKGIMP 601
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/315 (20%), Positives = 120/315 (38%), Gaps = 44/315 (13%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ G + + + R++ E I+P V Y TLI F +L V F E
Sbjct: 325 TYNGVILLLCKTGKVAEAERVLREMISEG-IAPDGVIYTTLIDGFCKLGNVSSAYRLFDE 383
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ +SP+ TY +I G + ++++ M + PD TY L+ GY G
Sbjct: 384 MQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEG- 442
Query: 312 LPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+M++ + L + P I A+ KC D ++
Sbjct: 443 --KMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANEL--------------- 485
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
E C + +E +I + + + +V+ + +D+ +K
Sbjct: 486 ---------LHEMCRKGLELNI---YTYNS----------LVNGLCKAGNIDQAVKLMKD 523
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
E AG+ Y + M Y R + +L++M + ++ + TF ++ + G
Sbjct: 524 MEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGM 583
Query: 489 RRKVNQVLGLMCKNG 503
++L M + G
Sbjct: 584 LEDGEKLLKWMLEKG 598
>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
Length = 410
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 13/207 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY AL+ Y G + +LF +++++ + P++ TYN LI + R F E
Sbjct: 75 TYTALINGYFVRGHREMGFALFAEMRRD-GVEPNLYTYNCLIGEWCRTGEFKSARLLFDE 133
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + NV +YN LIAG ++++ M+ + P T+ LL+ GY +G
Sbjct: 134 MPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGK 193
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW--L 369
+ + +K +IC + C V D + + A + + E+ P
Sbjct: 194 MANALHFFNQMKAAGLPPSVVTYNELICGF--CRVRDIARAVRAFLDM-KERGLAPTKVT 250
Query: 370 NVLLIRVYAKED-------CLEEMEKS 389
+LI +AKE+ L EMEK+
Sbjct: 251 YTILIAAFAKENEMDRAFMMLSEMEKA 277
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 6/156 (3%)
Query: 192 TYNALL-GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
+YN L+ G ++ L D Q LF +++E I PSIVT+N LI +G+ + + F
Sbjct: 145 SYNILIAGLCRHSKLKDAVQ-LFEAMRRE-GIRPSIVTFNLLIDGYGKAGKMANALHFFN 202
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
++K + L P+V TYN LI G+ + + MK + P TY +L+ +A
Sbjct: 203 QMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKEN 262
Query: 311 NLPR---MEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+ R M E VD + + ++ +C K
Sbjct: 263 EMDRAFMMLSEMEKAGLEVDVQSYGVLLHALCMEGK 298
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 14/179 (7%)
Query: 178 LFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
LFAE ++ + TYN L+G + G + LF ++ + + ++V+YN LI+
Sbjct: 95 LFAEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVK-GVVHNVVSYNILIAGL 153
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
R + F+ ++ + P++ T+N LI GY A + MKA + P
Sbjct: 154 CRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSV 213
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI------RAMICAYSKCSVTDR 349
TY L+ G+ R+ I V+ +D KE L +I A++K + DR
Sbjct: 214 VTYNELICGFC------RVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDR 266
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 45/234 (19%), Positives = 90/234 (38%), Gaps = 23/234 (9%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLAL---------------EVLNWRRRQAGYGTPM 154
G C + + E M++ G RP + L++ + G P
Sbjct: 152 GLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPP 211
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLF 213
+ Y + I R+ ++ A F + + L T TY L+ A+ D+ +
Sbjct: 212 SVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMML 271
Query: 214 RDLKKEANISPSIVTYNTLISVF---GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
+++K A + + +Y L+ G+++ H FQ + + PN Y+ +I G
Sbjct: 272 SEMEK-AGLEVDVQSYGVLLHALCMEGKMM---HARKLFQSMDLKGVKPNSVLYDMMIYG 327
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
Y K + M+ ++P+ +Y L +R + G E + + ++H
Sbjct: 328 YGREGSSYKALRLIMEMRKNGLIPNVASYCLTIRLLCNEGKCQEAEALIDDMEH 381
>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 754
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++GA + D+ SL +++ + I P+IVTYN L++ F V+ + +
Sbjct: 532 TYTTIIGALCQSKELDRAHSLLQEML-DKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEW 590
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + N+ PN TYN L+ Y EIY+ M + V+P+ NTY +L++G+ + N
Sbjct: 591 MLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARN 650
Query: 312 L 312
+
Sbjct: 651 M 651
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 8/155 (5%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+V A +L E +K L+ I TYN+L+ G ++ D+ EA + P + T
Sbjct: 474 GDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMD-EAGLKPDVYT 532
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE---EIYQ 285
Y T+I + +D + QE+ D + P + TYN L+ G+ M G+VE + +
Sbjct: 533 YTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF---CMSGRVEGGKRLLE 589
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
M + P+T TY L++ Y N+ +IY+
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYK 624
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
+ ++ + G ++ F +++K ++ VTY LI+ R + E Q
Sbjct: 356 AVFTTVMSGFCRKGDLAAARNWFDEMQKRG-LAADGVTYTALINGLCRAGELKEAERVLQ 414
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E++D L + TY LI GY + ++ M V P+ TY L G G
Sbjct: 415 EMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQG 474
Query: 311 NL 312
++
Sbjct: 475 DV 476
>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
Length = 745
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ A +G D+ SL +++ + I P+IVTYN L++ F V+ +
Sbjct: 538 TYTTLIDALCKSGDLDRAHSLLQEML-DKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDW 596
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + N+ PN TYN L+ Y EIY+ M++ V P+ NTY +L++G+ + N
Sbjct: 597 MLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARN 656
Query: 312 L 312
+
Sbjct: 657 M 657
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 98/237 (41%), Gaps = 28/237 (11%)
Query: 88 LRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQ 147
L E+ A D+D+V + G C + + + M Q G P +
Sbjct: 418 LLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNV----------- 466
Query: 148 AGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLS 206
+T T G+ G +V A +L E +NK L+ TYN+L+ G
Sbjct: 467 ------VTYTALTDGLCKQG---DVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYL 517
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
++ D+ A + P + TY TLI + +D + QE+ D + P + TYN
Sbjct: 518 EQAMRTMADMDT-ACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNV 576
Query: 267 LIAGYMTAWMWGKVE---EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
L+ G+ M G+VE ++ M + P+ TY L++ Y N+ +IY+
Sbjct: 577 LMNGF---CMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYK 630
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y +L + G + F +++++ ++ VTY T+I+ R + ++ E QE+
Sbjct: 364 YTTVLSGFCNKGDLVSARRWFDEMQRKG-LATDGVTYTTMINGLCRAVELEEAEKLLQEM 422
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA---GPVMPDTNTYLLLLRGYAHS 309
L + TY LI GY GK+ E +QM A V P+ TY L G
Sbjct: 423 WARRLDVDEVTYTVLIDGYCK---RGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQ 479
Query: 310 GNL 312
G++
Sbjct: 480 GDV 482
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 9/142 (6%)
Query: 172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
+D A +LF E +K+ + +YN LL A G + LF ++ +P +VTY
Sbjct: 244 LDEAIELFQELPHKN---VCSYNILLKALCDAGRVKDARQLFDEMAS----APDVVTYGI 296
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT-AWMWGKVEEIYQMMKAG 290
LI L +++ E+ + PN Y ++A W+ + + M++
Sbjct: 297 LIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQR- 355
Query: 291 PVMPDTNTYLLLLRGYAHSGNL 312
V+ D Y +L G+ + G+L
Sbjct: 356 KVILDEALYTTVLSGFCNKGDL 377
>gi|255661194|gb|ACU25766.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 426
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-IGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ +++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWVKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERAGLVAHAKRL 311
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 40/231 (17%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN LL Y L + LFR L + NI ++VTYN+++ ++G+ L + QE
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFR-LMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 244
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG- 310
+++ + PN TY+ +I+ ++ + ++Q ++ V D Y ++ Y +G
Sbjct: 245 MQNRGIEPNSITYSTIISIWVKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERAGL 304
Query: 311 ---------------NLPRMEKIYELV------------KHHVDG---KEFPLIRAMICA 340
N+PR I+ L + +D K+ + +I
Sbjct: 305 VAHAKRLLHELKRPDNIPRDTAIHILAAAGRLEEATWVFRQAIDAGEVKDITVFERLIHL 364
Query: 341 YSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKS 389
+SK + ++ MR E+ Y P NV L++ Y K L E EK+
Sbjct: 365 FSKYKKYSNVVEVFDKMR---ERRYFPDSNVIALVLNAYGK---LHEFEKA 409
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/308 (19%), Positives = 123/308 (39%), Gaps = 36/308 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 11 TYSTLITHFGKEGLFDAALSWLQKMEQD-RVPGDLVLYSNLIELSRKLCDYSKAISIFSR 69
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S +P++ YN +I + A ++ + + M+ VMPDT +Y LL + +
Sbjct: 70 LKRSGFAPDLVAYNSMINVFXKAKLFREARSLINEMRTAGVMPDTVSYTTLLTMHVENKR 129
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR I + N
Sbjct: 130 FLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKIGIEPNVVSYNT 189
Query: 372 LLIRVYAKEDCLEE------------MEKSI----------NDAFEHKTSVTTVRIMR-- 407
LL RVY + E +E+++ EH+ + ++ M+
Sbjct: 190 LL-RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNR 248
Query: 408 ----------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
I+S + + +D+ A ++ ++G + + LY + +V Y V
Sbjct: 249 GIEPNSITYSTIISIWVKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERAGLVAHA 308
Query: 458 ESVLKEME 465
+ +L E++
Sbjct: 309 KRLLHELK 316
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 9/160 (5%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ I ++ +D AA LF + N ++ Y ++ AY GL + L +LK
Sbjct: 257 YSTIISIWVKVGKLDRAAMLFQKLRNSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELK 316
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ NI + +++ GRL + F++ D+ ++ + LI + +
Sbjct: 317 RPDNIPRDTAIH--ILAAAGRL---EEATWVFRQAIDAGEVKDITVFERLIHLFSKYKKY 371
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
V E++ M+ PD+N L+L Y G L EK
Sbjct: 372 SNVVEVFDKMRERRYFPDSNVIALVLNAY---GKLHEFEK 408
>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02060, chloroplastic-like [Cucumis sativus]
Length = 720
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDL-KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TYN L+ G ++ + + KK +++P++VTY TLI + ++ A F+
Sbjct: 257 TYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFE 316
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHS 309
E+ + L N TYN LI G A + K+++I + G PDT T+ L+ + H+
Sbjct: 317 EMVNQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHA 376
Query: 310 GNLPRMEKIYE 320
GNL K++E
Sbjct: 377 GNLDDALKVFE 387
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 82/181 (45%), Gaps = 9/181 (4%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT---- 192
AL+ NW + G T++ Y ++ GR +++ A + + +
Sbjct: 95 ALQFFNWAQEM---GYTHTEQSYFSMLEILGRNRHLNTARNFLFSIEKRSRGIVKLEARF 151
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N+L+ + GL + +F +K +SPS+VT+N+L+++ + + + + E+
Sbjct: 152 FNSLMRNFNRAGLFQESIKVFTIMKSHG-VSPSVVTFNSLLTILLKRGRTNMAKKVYDEM 210
Query: 253 KDS-NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ ++P+ FT+N LI G+ M I+ + PD TY L+ G +G
Sbjct: 211 LSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGK 270
Query: 312 L 312
+
Sbjct: 271 V 271
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ T+N+LL + G ++ + ++ ++ ++P T+N LI F +VD
Sbjct: 183 SVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRI 242
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM-----KAGPVMPDTNTYLLLL 303
F ++ P+V TYN L+ G A GKV Y ++ K+ + P+ TY L+
Sbjct: 243 FNDLSRFGCEPDVVTYNTLVDGLCRA---GKVTVAYNVVKGMGKKSVDLNPNVVTYTTLI 299
Query: 304 RGYAHSGNLPRMEKIYE 320
RGY + + ++E
Sbjct: 300 RGYCAKREIEKALAVFE 316
>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 827
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/389 (21%), Positives = 154/389 (39%), Gaps = 26/389 (6%)
Query: 132 SRPRLALEVLNWRRRQAGYGTP--MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-K 188
SR + AL+++ ++ G +P ++ G G ++ A +LF E K +
Sbjct: 209 SRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSK---ACNLFNEMVQKGVVP 265
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+GTYN+++ A DK + + R + + + P VTYN +I +
Sbjct: 266 DVGTYNSIVDALCKARAMDKAEFVLRQM-VDKGVEPDGVTYNAIIHGYSCSGHWKESAKM 324
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F+++ L P+ T++ ++ EEI+Q M MPD +Y +LL GYA
Sbjct: 325 FRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYAT 384
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G M ++ + I +I A++K + D + M+ + RP
Sbjct: 385 EGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQ---GQGVRP- 440
Query: 369 LNVL----LIRVYAK----EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420
NV+ LI + + D +E+ + I+ E T+V ++ + +
Sbjct: 441 -NVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAV-----YHSLIHGFCMHGDLV 494
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMV-MYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
K F+ S G ++ S ++ + RV + + V + + + TF +
Sbjct: 495 KAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSL 554
Query: 480 YYAYATCGQRRKVNQVLGLMCKNGYDVPV 508
Y G+ K VL M G + V
Sbjct: 555 IDGYCLVGKMEKAFGVLDAMVSVGIEPDV 583
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/328 (19%), Positives = 130/328 (39%), Gaps = 13/328 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEAN-ISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
+YN ++ + + S + + + + KE SP +V++NT+I F + V F
Sbjct: 197 SYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFN 256
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E+ + P+V TYN ++ A K E + + M V PD TY ++ GY+ SG
Sbjct: 257 EMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSG 316
Query: 311 NLPRMEKIYELVKHH---VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
+ K++ + D F + +C + R K E + + + K + P
Sbjct: 317 HWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHG------RSKDAEEIFQYMTTKGHMP 370
Query: 368 WL--NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
+ +L+ YA E +M + + K V+ + ++S++ + +D+
Sbjct: 371 DIVSYSILLHGYATEGRFADMNNLFH-SMADKGIVSNCHCINILISAHAKRGMMDEAMLV 429
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485
+ G R Y + + + R+ + +M + I+ + + + + +
Sbjct: 430 FTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCM 489
Query: 486 CGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
G K + + M G P F S
Sbjct: 490 HGDLVKAKEFISEMMSKGLHRPNIVFFS 517
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
TI T+N+L+ Y G +K + D I P +VT NTL+S + + +D
Sbjct: 547 TIVTFNSLIDGYCLVGKMEKAFGVL-DAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLIL 605
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
F+E+ + P TYN ++ G + A ++++ M D +TY +LL+G
Sbjct: 606 FREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKG 662
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 96/222 (43%), Gaps = 19/222 (8%)
Query: 98 DLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKE 157
D++ +F + +KG SN + L+ R + +L + Q G G
Sbjct: 390 DMNNLFHSMADKGIV-----SNCHCINILISAHAKRGMMDEAMLVFTEMQ-GQGVRPNVV 443
Query: 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDL 216
Y+ I R+ + A + F++ + ++ Y++L+ + +G K + ++
Sbjct: 444 TYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEM 503
Query: 217 KKEANISPSIVTYNTLI---SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+ P+IV ++++I + GR++ + I D P + T+N LI GY
Sbjct: 504 MSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDR---PTIVTFNSLIDGY-- 558
Query: 274 AWMWGKVEEIYQMMKAG---PVMPDTNTYLLLLRGYAHSGNL 312
+ GK+E+ + ++ A + PD T L+ GY SG +
Sbjct: 559 -CLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKI 599
>gi|302762128|ref|XP_002964486.1| hypothetical protein SELMODRAFT_438810 [Selaginella moellendorffii]
gi|300168215|gb|EFJ34819.1| hypothetical protein SELMODRAFT_438810 [Selaginella moellendorffii]
Length = 919
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/362 (21%), Positives = 143/362 (39%), Gaps = 22/362 (6%)
Query: 167 GRINNVDLAADLFAEAAN-KHLKTIGTYNALLGAYMYNG---LSDKCQSLFRDLKKEANI 222
G+ V A DLF ++ TY+ L+ +Y+ +G D+ L+ +++
Sbjct: 307 GQTGKVGRARDLFDIIIQYAYVPKESTYSTLIKSYLQDGRYKYVDEAWKLYNRMREFGGY 366
Query: 223 SPSIVTYNTLISVF-----GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P + ++L L D A F I++ NL Y L+ +
Sbjct: 367 EPPAIVKHSLFKFLTESGKASLRWADRANAVFNSIRECNLPCTTEMYETLVIIHAVKGDE 426
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+V+ + MK+ + + L+R + SGN + EK++E +K + ++ A+
Sbjct: 427 ARVQFLVDDMKSQGLELSPLIFGALIRVCSKSGNYVKAEKLFEQLKETQEELDWHYYIAL 486
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRP-----WLNVLLIRVYAKEDCLEEMEKSIND 392
+ AY K + + M L E E P L ++I V A D +E E+ +
Sbjct: 487 MEAYGKAGLPGKA------MDLFRETENSPTFPKFALFKIIIEVMASNDQVEATEELLGK 540
Query: 393 AFEHKTSVTTVR-IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451
T++ ++ Y R DK+ + G R R YH ++ +
Sbjct: 541 LHPSLYKFQTLQSAFNAVMDMYSRLGKFDKVDSTYAYMSKHGCRPNRESYHLQLQAFIDS 600
Query: 452 RRVEEMESVLKEM-ENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNA 510
R+++ E + M E + KT IM A+ ++ KV ++ L+ ++ VP
Sbjct: 601 GRLDKAEELYNNMIERKCLRPDFKTHGIMLGAFGKADRKDKVKEIFKLLTEHRQPVPEEF 660
Query: 511 FP 512
P
Sbjct: 661 QP 662
>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 104/463 (22%), Positives = 185/463 (39%), Gaps = 80/463 (17%)
Query: 38 LTKSPNHSFTRDLCAPATHTV-FPTLVRL------LSETLT----------YPDARVRKD 80
L +P HS T+ P + + FP+L L L+ + + R +
Sbjct: 51 LPSTPGHSATKSTSTPLSQSPNFPSLCSLPTSKSELASNFSGRRSTRFVSKFHFGRPKSS 110
Query: 81 LTQTVSALRDELLANV-----DD--LDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSR 133
+T SA+ +E+L V DD LD + + K C S Y F L+++LG+R
Sbjct: 111 MTTRHSAIAEEVLHQVLQFGKDDASLDNILLNFESK-LC----GSEDYTF--LLRELGNR 163
Query: 134 PRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEA-ANKHLKTI 190
A+ ++ + G K + I GR+ V+LA +F A + + T+
Sbjct: 164 GECWKAIRCFDFALVREGRKNERGKLA-SAMISTLGRLGKVELAKGVFETALSEGYGNTV 222
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL-VDHMEAAF 249
++AL+ AY +G D+ +F +K + + P++VTYN +I G+ + + F
Sbjct: 223 FAFSALISAYGKSGYFDEAIKVFESMKV-SGLKPNLVTYNAVIDACGKGGVEFKRVVEIF 281
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E+ + + P+ TYN L+A +W ++ M + D TY LL
Sbjct: 282 EEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKG 341
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
G +M+ YE++ K P + M Y+K ++E + L E ++
Sbjct: 342 G---QMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAG------RLEDALNLYNEMKF- 391
Query: 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L + L RV S N ++S Y + +
Sbjct: 392 --LGIGLDRV------------SYN----------------TLLSIYAKLGRFEDALKVC 421
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI 469
K S+G + Y++ + Y Q + E+ V KEM+ ++
Sbjct: 422 KEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRV 464
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 2/180 (1%)
Query: 170 NNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+DLA ++ E K L + TY+ + Y G + +L+ ++K I V+
Sbjct: 342 GQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKF-LGIGLDRVS 400
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YNTL+S++ +L + +E+ S + +V TYN L+ GY + +V +++ MK
Sbjct: 401 YNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMK 460
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
V P+ TY L+ Y+ +++ K + L +I A K + D
Sbjct: 461 KDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVD 520
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 16/201 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+LL GL + ++LF ++ + I + TYNTL+ + +D E
Sbjct: 295 TYNSLLAVCSRGGLWEAARNLFNEMI-DRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLE 353
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ + PNV TY+ + GY A G++E+ +Y MK + D +Y LL YA
Sbjct: 354 MPGKKILPNVVTYSTMADGYAKA---GRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAK 410
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G K+ + + K+ A++ Y K + + ++ M K+ R +
Sbjct: 411 LGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEM-----KKDRVF 465
Query: 369 LNVL----LIRVYAKEDCLEE 385
N+L LI VY+K EE
Sbjct: 466 PNLLTYSTLIDVYSKGSLYEE 486
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ Y L ++ +FR+ K +A + +V Y+ LI+ + LVD E
Sbjct: 470 TYSTLIDVYSKGSLYEEAMEVFREFK-QAGLKADVVLYSELINALCKNGLVDSAVLLLDE 528
Query: 252 IKDSNLSPNVFTYNYLIAGY 271
+ + PNV TYN +I +
Sbjct: 529 MTKEGIRPNVVTYNSIIDAF 548
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 175 AADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A ++F E LK + Y+ L+ A NGL D L ++ KE I P++VTYN++I
Sbjct: 487 AMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEG-IRPNVVTYNSII 545
Query: 234 SVFGRL----LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA---WMWGKVEEIYQM 286
FGR LVD + A+ + + SP LI G + W G V + YQ
Sbjct: 546 DAFGRSTTAEFLVDGVGASNERQSE---SPTFM----LIEGVDESEINWDDGHVFKFYQQ 598
Query: 287 M---KAGP 291
+ K GP
Sbjct: 599 LVSEKEGP 606
>gi|301753214|ref|XP_002912482.1| PREDICTED: leucine-rich PPR motif-containing protein,
mitochondrial-like [Ailuropoda melanoleuca]
Length = 1435
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 153/365 (41%), Gaps = 48/365 (13%)
Query: 179 FAEAANKHLKTIGT------YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
FA L+ +GT YNALL Y+ N ++ EANI P+ VTY L
Sbjct: 186 FAHRIWDKLQKLGTVYDVSHYNALLKVYLQNEYKFSPTDFLAKME-EANIQPNRVTYQRL 244
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I+ + + ++ +K +L ++ L+ G+ A E I +MK +
Sbjct: 245 IAAYCNMGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDIENAENILTVMKEAGI 304
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELV-KHHVDGKEFPLIRAMICAYSKCSVTDRIK 351
P +TYL LL YA G++ R+++ E V K + + L++ +I ++SK + +
Sbjct: 305 EPGPDTYLTLLNAYAEKGDIDRVKQTLEKVEKSDLYLMDRDLLQ-IIFSFSKAGYSQYVP 363
Query: 352 KIEALMRLIPEKEYRP-WLNVLLIRVYAK-ED--------CLEEMEKSIND----AFEHK 397
+I L ++ E+ Y P +N++L+ V K ED C E ++D +H
Sbjct: 364 EI--LEKITYERRYIPDAMNLILLLVTEKLEDTAFQILLACPVSREDGLSDFVGFFLQHC 421
Query: 398 TSVTT------------------VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
++ T ++ + S N D +K + G+ +
Sbjct: 422 VTMNTPAEKLKDYCRKLKESQMHTSPLQFTLQSALLANKTDLAKALMKALKEEGFPVRIH 481
Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
+ +V + ++ V+ + VLK M + ++T+ + Y + + R + VL
Sbjct: 482 YFWPLLVGHQKEKDVQGIIEVLKAMHEMGVSPDQETY--INYVFPSFDSVRSAHAVLQ-- 537
Query: 500 CKNGY 504
+NGY
Sbjct: 538 -ENGY 541
>gi|302806906|ref|XP_002985184.1| hypothetical protein SELMODRAFT_121741 [Selaginella moellendorffii]
gi|300147012|gb|EFJ13678.1| hypothetical protein SELMODRAFT_121741 [Selaginella moellendorffii]
Length = 106
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYNAL+ + +G + + + ++K A P++ TYNT+++ +GR + ME +E
Sbjct: 12 TYNALVSVFCRSGEIEAAEKMLENMK-WAECPPNVSTYNTILAAYGRSSDIVQMEKWLEE 70
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
++ + L+PNV TYN L+ Y+ KV+E Y+ M
Sbjct: 71 LRKAGLTPNVVTYNTLLFSYLKKGSLAKVDETYREM 106
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
I S TYN L+SVF R ++ E + +K + PNV TYN ++A Y G+
Sbjct: 5 GIKMSTPTYNALVSVFCRSGEIEAAEKMLENMKWAECPPNVSTYNTILAAY------GRS 58
Query: 281 EEIYQM------MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+I QM ++ + P+ TY LL Y G+L ++++ Y
Sbjct: 59 SDIVQMEKWLEELRKAGLTPNVVTYNTLLFSYLKKGSLAKVDETY 103
>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 114/535 (21%), Positives = 201/535 (37%), Gaps = 81/535 (15%)
Query: 24 SSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETL--TYPDARVRKDL 81
+S P LP L P+ S + D P V LL ++L ++ D+
Sbjct: 46 TSSPDDLPGLV------DPDQSLSSD--TSRVQCFSPQEVSLLRDSLLDSHADSCSSHRT 97
Query: 82 TQTVSALRDELLA-----NVDDL--DKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRP 134
QTV + L N DD +K VL + FR+ N VE++ L S P
Sbjct: 98 LQTVKISNEAFLILDAIRNCDDGFGEKTHIVLRQ-----FRQKLNPDLVVEILSFLKS-P 151
Query: 135 RLALEVLNWRRRQAGYG-TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTY 193
L ++ W RQ GY TP Y + R + + + E + +G
Sbjct: 152 ELCVKFFLWAGRQIGYDHTPAV---YIALLDVFERGSYDRVPEEFLREIRGDDKEVLGKL 208
Query: 194 -NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
N L+ NGL + LK + P+ +TYN L+ VF R +D + +E+
Sbjct: 209 LNVLIRKCCRNGLWNVALEELGRLK-DFGYKPTRMTYNALVQVFLRADKLDTAQLVHREM 267
Query: 253 KDSNLS--------------------------------PNVFTYNYLIAGYMTAWMWGKV 280
+ LS PN YN +I+G A + +
Sbjct: 268 SELGLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEA 327
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340
+ M++ +P+ TY +LL G + L R ++I ++ + + +++ A
Sbjct: 328 MDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHA 387
Query: 341 YSKCSVTDRIKKIEALMRLIPEKEYRPW---LNVLLIRVYAKED-----CLEEMEKSIND 392
Y K +D L++ + + E +P N+L+ + + + E EK+ N+
Sbjct: 388 YCK---SDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNE 444
Query: 393 AFEHKTSVTTVRIMRCIVSSYFRC----NAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448
T + V ++ S+ RC +K + G+ S Y +
Sbjct: 445 MLSAGTVLNKVNVV-----SFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFL 499
Query: 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+ RVE + KEM+ + T+ I+ ++ G ++ + L M ++G
Sbjct: 500 CNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDG 554
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 1/145 (0%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
N + TY+ ++G + LF+++K + P + TY LI F + ++
Sbjct: 482 GNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKG-TGVVPDVYTYTILIDCFSKAGII 540
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
E+ P V TY LI Y+ A E++++M A P+ TY L
Sbjct: 541 KQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTAL 600
Query: 303 LRGYAHSGNLPRMEKIYELVKHHVD 327
+ GY SGN+ + +IY ++ D
Sbjct: 601 IDGYCKSGNIEKACQIYARMRGDAD 625
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 2/165 (1%)
Query: 149 GYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSD 207
G G Y++ I F + V+ A LF E + + TY L+ + G+
Sbjct: 482 GNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIK 541
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+ + ++ ++ P++VTY TLI + + V F+ + PNV TY L
Sbjct: 542 QAHNWLDEMVRDG-CEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTAL 600
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
I GY + K +IY M+ +PD + Y + A N+
Sbjct: 601 IDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNV 645
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 55/301 (18%), Positives = 127/301 (42%), Gaps = 24/301 (7%)
Query: 173 DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
DL +F + + TI Y+AL+ + D+ Q +F + E +P++ TY++L
Sbjct: 666 DLLETMFVDGCEPN--TI-VYDALIDGFCKAAKLDEAQEVFHKMV-ERGYNPNVYTYSSL 721
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I + +D + ++ +++ +PN+ Y +I G + ++ MM+
Sbjct: 722 IDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGC 781
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352
P+ TY ++ G+ +G +++K EL + P + C T + +
Sbjct: 782 KPNVVTYTAMIDGFGKAG---KVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDE 838
Query: 353 IEALMRLIPEKEYRPWLNVL--LIRVYAKE-----DCLEEMEKSINDAFEHKTSVTTVRI 405
AL+ + + + ++ +I Y +E LEE+EK+ S T+ +
Sbjct: 839 AYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKN--------GSAPTILL 890
Query: 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLC--RSLYHSKMVMYASQRRVEEMESVLKE 463
+ ++ ++ + ++ K SA + ++LY S + ++ +++ + +
Sbjct: 891 YKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYD 950
Query: 464 M 464
M
Sbjct: 951 M 951
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 76/386 (19%), Positives = 148/386 (38%), Gaps = 62/386 (16%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFA-EAANKHLKTI 190
S+ + + NW G T YT I + V +A +LF A +
Sbjct: 535 SKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNV 594
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TY AL+ Y +G +K ++ ++ +A+I P + Y F+
Sbjct: 595 ITYTALIDGYCKSGNIEKACQIYARMRGDADI-PDVDMY-------------------FK 634
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ PNV TY L+ G A ++ + M P+T Y L+ G+ +
Sbjct: 635 IKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAA 694
Query: 311 NLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRI---KKIEALMRLIP---EK 363
L ++++ ++V+ + Y+ S+ DR+ K+++ +++++ E
Sbjct: 695 KLDEAQEVFHKMVERGYNPN----------VYTYSSLIDRLFKDKRLDLVLKVLSKMLEN 744
Query: 364 EYRPWLNVLLIRVYAKE-DCLEEMEKSINDAF------EHKTSVTTVRIMRCIVSSYFRC 416
P I +Y + D L ++ K+ ++A+ E K V ++ + +
Sbjct: 745 SCAPN-----IVIYTEMIDGLSKVAKT-DEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKA 798
Query: 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476
VDK + S G Y + + ++E ++L+EM K+T+
Sbjct: 799 GKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEM--------KQTY 850
Query: 477 W---IMYYAYATCGQRRKVNQVLGLM 499
W + Y G +R+ LGL+
Sbjct: 851 WPKHVSSYCKVIEGYKREFILSLGLL 876
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 124/299 (41%), Gaps = 21/299 (7%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TYN L+ G D+ L + + P IVTY TLI+ + R+ +D A F
Sbjct: 516 IITYNTLIDGCCLAGKMDEATKLLASMV-SVGVKPDIVTYGTLINGYCRVSRMDDALALF 574
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E+ S +SPN+ TYN ++ G +E+Y + + +TY ++L G +
Sbjct: 575 KEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKN 634
Query: 310 GNLP----RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR---LIPE 362
NL RM + L ++ + F + MI A KC D K + A L+P+
Sbjct: 635 -NLTDEALRMFQNLCLTDLQLETRTFNI---MIGALLKCGRMDEAKDLFAAHSANGLVPD 690
Query: 363 KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
+ LI ++ LEE++ E+ S + R++ IV + + +
Sbjct: 691 VRTYSLMAENLI----EQGSLEELDDLFLSMEENGCSADS-RMLNSIVRKLLQRGDITRA 745
Query: 423 ANFVKRAESAGWRLCRS----LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW 477
++ + + L S L S +++ R+ + LK ++ K C W
Sbjct: 746 GTYLFMIDEKHFSLEASTASFLLESSPIVWEQISRISHLSVNLKLIKQPKCTCELGPKW 804
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P +V+YNT+++ F + D + + E+ D + P+V TY+ +IA A K E+
Sbjct: 199 PDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEV 258
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
M VMPD TY +L GY SG P+ E I L K DG E
Sbjct: 259 LNTMVKNGVMPDCMTYNSILHGYCSSGQ-PK-EAIGTLKKMRSDGVE 303
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 3/131 (2%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N L+ AY D+ +F +++ ++P++V Y T+I V + VD F+++
Sbjct: 379 FNILICAYAKQEKVDQAMLVFSKMRQHG-LNPNVVCYGTVIDVLCKSGSVDDAMLYFEQM 437
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
D L+PN+ Y LI G T W K EE I +M+ G + +T + ++ + G
Sbjct: 438 IDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICL-NTIFFNSIIDSHCKEGR 496
Query: 312 LPRMEKIYELV 322
+ EK+++L+
Sbjct: 497 VIESEKLFDLM 507
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 71/325 (21%), Positives = 124/325 (38%), Gaps = 22/325 (6%)
Query: 182 AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241
A K T+ TY L+G G D + ++ K+ +I L +
Sbjct: 84 GAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRT 143
Query: 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM---KAGPVMPDTNT 298
D M+ + + + P+VF+YN L+ G + E+ MM + G PD +
Sbjct: 144 SDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVS 203
Query: 299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEA 355
Y +L G+ G+ +K Y +D P + ++I A K D+ ++
Sbjct: 204 YNTVLNGFFKEGD---SDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLN 260
Query: 356 LM---RLIPE-KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVS 411
M ++P+ Y L+ KE + ++K +D E VT +M +
Sbjct: 261 TMVKNGVMPDCMTYNSILHGYCSSGQPKE-AIGTLKKMRSDGVEPNV-VTYSSLMNYLCK 318
Query: 412 SYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC 471
+ A + KR R+L YA++ + EM ++L M I
Sbjct: 319 NGRSTEARKIFDSMTKRGLEPDIATYRTLLQG----YATKGALVEMHALLDLMVRNGIQP 374
Query: 472 SKKTFWIMYYAYATCGQRRKVNQVL 496
F I+ AYA ++ KV+Q +
Sbjct: 375 DHHVFNILICAYA---KQEKVDQAM 396
>gi|410110133|gb|AFV61146.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
rhodocnemis]
Length = 345
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 76 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 134
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN +I Y K + Q M++ +
Sbjct: 135 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRGIE 194
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 195 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 254
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 22/166 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 140 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMIMIYGKTLEHEKANNLIQEMQSRG-IEPN 196
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + + +I Y A + + +
Sbjct: 197 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLH 256
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+K +P DT ++L A +G R+E+ + + +D E
Sbjct: 257 ELKRPDNIPRDTAIHIL-----AGAG---RIEEATYVFRQAIDAGE 294
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 108/262 (41%), Gaps = 11/262 (4%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ P +V YN +I+VFG+ L + E+K + + PN +Y+ L
Sbjct: 5 KAISIFSRLKR-LGFMPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 63
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + ++ M+ + D T +++ Y G +K++ ++
Sbjct: 64 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 123
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCL 383
++ Y + + L RL+ K NV+ +I +Y K
Sbjct: 124 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMIMIYGKTLEH 178
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
E+ I + ++ I+S + + +D+ A ++ S+G + + L+ +
Sbjct: 179 EKANNLIQEMQSRGIEPNSI-TYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQT 237
Query: 444 KMVMYASQRRVEEMESVLKEME 465
+V Y V + +L E++
Sbjct: 238 MIVAYERAGLVAHAKRLLHELK 259
>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Brachypodium distachyon]
Length = 571
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 113/252 (44%), Gaps = 15/252 (5%)
Query: 172 VDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
VDLA F A + + + T+N ++ G K + +D++ ++PS+VTYN
Sbjct: 166 VDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGDVAKDIRAWG-LAPSVVTYN 224
Query: 231 TLISVF---GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
T+I + GR + H++A +E+ ++ +SPN T+N L+ GY +++ M
Sbjct: 225 TIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEM 284
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347
K + TY L+ G G ++E+ +LV D P + + +
Sbjct: 285 KQQGIAASVVTYSALVWGLCSEG---KVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKK 341
Query: 348 DRIKKIEALMRLIPEKEYRPWLNV----LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV 403
+ E + + +K +P NV +L+ Y + D +++ ++ +A K
Sbjct: 342 GMMTDAEGWIDSMEQKNVKP--NVVTYTILVDGYRRLDKMKD-ALAVKEAMSGKGVRPNA 398
Query: 404 RIMRCIVSSYFR 415
RI C+++ + R
Sbjct: 399 RIYNCLIAGFTR 410
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 76/325 (23%), Positives = 130/325 (40%), Gaps = 43/325 (13%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
PS + N L+S VD E AF+ +SP++FT+N +I+G K ++
Sbjct: 148 PSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGDV 207
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP---LIRAMICA 340
+ ++A + P TY ++ GY G RM + L+K V+ P ++
Sbjct: 208 AKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNG 267
Query: 341 YSKCS-------VTDRIK----------------------KIEALMRLIPEKE---YRPW 368
Y K S V + +K K+E ++L+ E + P
Sbjct: 268 YCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPN 327
Query: 369 LNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV-DKLANF 425
L L ++ + K+ + + E I D+ E K V +V Y R + + D LA
Sbjct: 328 LATLNSVLNGFCKKGMMTDAEGWI-DSMEQKNVKPNVVTYTILVDGYRRLDKMKDALA-- 384
Query: 426 VKRAESA-GWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
VK A S G R +Y+ + + + +L EM + T+ ++ A
Sbjct: 385 VKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALC 444
Query: 485 TCGQRRKVNQVLGLMCKNGYDVPVN 509
G+ RK ++L M G + PV+
Sbjct: 445 VKGEVRKAVKLLDEMLMVGLE-PVH 468
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 99/240 (41%), Gaps = 28/240 (11%)
Query: 85 VSALRDELL-ANVDDLDKVFRVLDEKGSCLFRRHSNGYAFV---ELMKQLGSRPRLALEV 140
V AL E++ A + + F VL G C + SN A V E MKQ G +A V
Sbjct: 242 VDALLKEMVEAGISPNEVTFNVL-VNGYC---KDSNTAAAVRVFEEMKQQG----IAASV 293
Query: 141 LNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAY 200
+ + G + EE G+K + ++ L +L T N++L +
Sbjct: 294 VTYSALVWGLCSEGKVEE---GVKLVDEMKDLGLVPNL------------ATLNSVLNGF 338
Query: 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN 260
G+ + D ++ N+ P++VTY L+ + RL + A + + + PN
Sbjct: 339 CKKGMMTDAEGWI-DSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPN 397
Query: 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
YN LIAG+ W V + M+ V D TY +L+ G + + K+ +
Sbjct: 398 ARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLD 457
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 54/140 (38%), Gaps = 4/140 (2%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L+ + NG L +++ + + IVTYN LI V E+
Sbjct: 401 YNCLIAGFTRNGDWRSVSGLLDEMRMKG-VRADIVTYNVLIGALCVKGEVRKAVKLLDEM 459
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
L P TYN +I GY EI M+ G + TY + ++ G
Sbjct: 460 LMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMG-- 517
Query: 313 PRMEKIYELVKHHVDGKEFP 332
+ME+ EL+ ++ P
Sbjct: 518 -KMEETNELLNEMLEKGLVP 536
>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 2/163 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAA-NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
+T I RI +LAA L E + + T N+L+ Y G DK + +F L
Sbjct: 113 FTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFH-LM 171
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ P + +Y+ I+ + ++ +D F E+ + PN TYN LI A
Sbjct: 172 VSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRP 231
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ +++ M A + PD Y LL G+ GNL M +++
Sbjct: 232 RDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQ 274
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Query: 168 RINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
++ +D A +LF E +++ + TYN L+ A Q LFR + +SP I
Sbjct: 192 KVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMC-ACGLSPDI 250
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
+ Y+TL+ F + +D M FQE++ + P++ Y +I G + +E+
Sbjct: 251 LAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSR 310
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ + PD +TY L+ G G++
Sbjct: 311 LIVEGLKPDVHTYTALVDGLCREGSI 336
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 75/169 (44%), Gaps = 4/169 (2%)
Query: 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLF-RD 215
E+ + + R+ + LF E + +K + T + L+ + + D S+F +
Sbjct: 42 EFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILINCFCFLHHVDYGFSVFGKT 101
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
LK+ P +V + TLI R+ + +E+ P+V T N L+ GY +
Sbjct: 102 LKR--GFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQG 159
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
KV +I+ +M + + PD +Y + + GY + ++++ + H
Sbjct: 160 KIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSH 208
>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 6/192 (3%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEA-ANKHLKTIGTYNA 195
A+E+L +++ G + +T I R ++A L+ + A+ + T TYNA
Sbjct: 326 AVELLGKMKKR---GCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNA 382
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ G + ++F+ + ++ PS TYN +I F + + F ++ +
Sbjct: 383 LINQLCVEGRFETAFTIFKWMLSHGSL-PSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKA 441
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
SPNV TYN LI GY + ++MK + PD TY L+ G++ G L
Sbjct: 442 GSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHA 501
Query: 316 EKI-YELVKHHV 326
+ Y +++H +
Sbjct: 502 TSLFYGMMEHGI 513
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 13/197 (6%)
Query: 126 LMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA 183
L+ QL R A + W + T E K G I + D +A
Sbjct: 383 LINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAG 442
Query: 184 NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
+ + TYN L+ Y G + L ++ K + P TY LIS F R ++
Sbjct: 443 SS--PNVITYNTLIYGYCKQGNLNNAMRLL-EIMKGNGLKPDAWTYTELISGFSRGGKLE 499
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE----IYQMMKAGPVMPDTNTY 299
H + F + + +SPN TY +I GY KV++ ++M+++G +P + TY
Sbjct: 500 HATSLFYGMMEHGISPNHVTYTAIIDGYFN---LAKVDDALALFWKMVESGN-LPSSQTY 555
Query: 300 LLLLRGYAHSGNLPRME 316
+++ G++ + ++ E
Sbjct: 556 NVMISGFSKTNSISEAE 572
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ + G + SLF + E ISP+ VTY +I + L VD A F +
Sbjct: 484 TYTELISGFSRGGKLEHATSLFYGMM-EHGISPNHVTYTAIIDGYFNLAKVDDALALFWK 542
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +S P+ TYN +I+G+ + E M ++P+ TY + G +G
Sbjct: 543 MVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGR 602
Query: 312 LPRMEKIYE 320
KI+
Sbjct: 603 TGLAFKIFH 611
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY A++ Y D +LF + + N+ PS TYN +IS F + + E +
Sbjct: 519 TYTAIIDGYFNLAKVDDALALFWKMVESGNL-PSSQTYNVMISGFSKTNSISEAENFCGK 577
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ L PNV TY I G G +I+ M+ P+ TY L+ G G
Sbjct: 578 MVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEG 636
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
+ I PS++T+NT+I++ + V + I + PN FTY LI G+
Sbjct: 196 SGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDL 255
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHVD 327
++ M P++ TY L+ G G L M+ + E+V+ ++
Sbjct: 256 AFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIE 304
Score = 39.3 bits (90), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 116/304 (38%), Gaps = 37/304 (12%)
Query: 36 FTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLAN 95
F L+ P+ S L +T FP LV +S L+ P +L L+ + N
Sbjct: 26 FNLSSEPHPS--SPLPISSTTNPFPELVSKISTILSSPKWEHSSELCHLSPKLKPHHVVN 83
Query: 96 V----DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRL--------ALEVLNW 143
+ + D V R F +H FV ++ +L R RL L + +
Sbjct: 84 ILQTHKNTDSVLRFFFWISRRKFFKHDMS-CFVSMLNRL-VRDRLFAPADHVRILMIKSC 141
Query: 144 RRR-------------QAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-T 189
R + Y T +T + G+ + VDLA D++ + N ++ +
Sbjct: 142 RNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPS 201
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ T+N ++ G + + + + + + P+ TY +LI R +D A F
Sbjct: 202 LLTFNTMINILCKKGRVQEAKLIMSHIFR-YDAYPNAFTYTSLILGHCRNHNLDLAFAMF 260
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRGY 306
+ PN TY+ LI G + G++EE M M + P TY + L
Sbjct: 261 DRMVKDGCDPNSVTYSTLINGLCSE---GRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSL 317
Query: 307 AHSG 310
+G
Sbjct: 318 CDAG 321
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY +L+ + N D ++F + K+ P+ VTY+TLI+ ++ +E
Sbjct: 239 TYTSLILGHCRNHNLDLAFAMFDRMVKDG-CDPNSVTYSTLINGLCSEGRLEEAMDMLEE 297
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + P V+TY + A + E+ MK +P+ T+ L+ G + G
Sbjct: 298 MVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDG 356
>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Brachypodium distachyon]
Length = 684
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 104/223 (46%), Gaps = 7/223 (3%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
L + +YN ++ ++ G DK + ++++ E + P++VT+NTLIS + +L V + +
Sbjct: 418 LSGVTSYNMVIDCFVKAGAVDKAAEIIKEMR-EKGVLPNLVTFNTLISGYSKLGNVHNAK 476
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
A + + + L P++ T+ LI G + + M V P+ +TY +L+
Sbjct: 477 AVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMHAL 536
Query: 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRL--IPEK 363
+G++ + + +K + A I ++ + D+ + I A++RL +P+
Sbjct: 537 CSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKVDKARNIFNAMLRLGVVPDN 596
Query: 364 -EYRPWLNVLLI--RVYAKEDCLEEMEKSINDAFEHKTSVTTV 403
Y + L R+ ++ L ME S + A H T + V
Sbjct: 597 YTYNSLIKALCDERRIDEAKEILLLMESSGSSATTHHTHLPIV 639
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/352 (18%), Positives = 129/352 (36%), Gaps = 34/352 (9%)
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
AL+ ++ GL+ +F + + + PS YN LI R VD FQ++
Sbjct: 146 ALIASWGRLGLAQYAHEVFVQMPR-LGLRPSTAVYNALIVASVRAGAVDTAYLRFQQMPA 204
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
P+ FTYN L+ G + + + + M+ + P+ TY +L+ G+ ++G
Sbjct: 205 DGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCNAGRPED 264
Query: 315 MEKIYELVKHHVDGKEFPLIRAMICAYSKC------------------------------ 344
+++ +K R ++ +C
Sbjct: 265 AVHVFDTMKEKGVSPNEASYRTLVHGAFRCLGRHKAYVMLTEWLGREPPPHHSAWQCMLY 324
Query: 345 --SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEK-SINDAFEHKTSVT 401
S + K++ + + + + Y + I V CLE + + D F K
Sbjct: 325 CLSKNEMAKEVVEVTKKMNSRGYLLDNAIFGIVVSCAVKCLELSDLCGLLDDFVKKGGNP 384
Query: 402 TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL 461
+ ++ S C + K +++KR G + Y+ + + V++ ++
Sbjct: 385 GFDVYIMVIKSLLGCKSSSKANHYLKRMVLDGLLSGVTSYNMVIDCFVKAGAVDKAAEII 444
Query: 462 KEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513
KEM + + TF + Y+ G VL ++ ++G + F S
Sbjct: 445 KEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIPDIITFTS 496
>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
Length = 1147
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 103/233 (44%), Gaps = 20/233 (8%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKC 209
G P+T + I+ + D A + E N + T TYN + A G D
Sbjct: 339 GFPVTPYSFNPLIEGYCKQGLFDEAWGVTDEMLNAGIYPTTSTYNIYIRALCEFGRIDDA 398
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+ L + +P +V+YNTL+ + ++ F ++K N++P++ TYN LI
Sbjct: 399 RELLSSMA-----APDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLID 453
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDG 328
G + + + + M + + PD TY LL+G+ +GNL +IY E+++ +
Sbjct: 454 GLCESGNLEGAQRLKEEMTSQLIYPDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKP 513
Query: 329 KEFPLIRAMICAYSKCSVTD-RIKKIEALMRL----IPEKEYRPWLNVLLIRV 376
+ AY+ +V + R+ E RL + E + P L + +R+
Sbjct: 514 DGY--------AYTTRTVGELRLGDSEKAFRLHEEMVAEDHHAPDLTIYNVRI 558
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 7/171 (4%)
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKC 209
Y T T Y + + GRI++ A +L + A + +YN L+ Y+ +
Sbjct: 376 YPTTSTYNIYIRALCEFGRIDD---ARELLSSMA---APDVVSYNTLMHGYIKMRKFVEA 429
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
LF DLK NI+PSIVTYNTLI ++ + +E+ + P+V TY L+
Sbjct: 430 SLLFDDLKA-GNINPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPDVITYTTLLK 488
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
G++ EIY M + PD Y G G+ + +++E
Sbjct: 489 GFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHE 539
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 77/166 (46%), Gaps = 10/166 (6%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLK 217
YT +K + N+ +A +++ E K +K G Y + G S+K L ++
Sbjct: 483 YTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHEEMV 542
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ---EIKDSNLSPNVFTYNYLIAGYMTA 274
E + +P + YN I L V ++E A + +I L P+ TY +I GY+
Sbjct: 543 AEDHHAPDLTIYNVRID---GLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRGYLEK 599
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ ++Y M + + P TY +L+ G+A +G R+E+ ++
Sbjct: 600 GRFKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAG---RLEQAFQ 642
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 74/158 (46%), Gaps = 11/158 (6%)
Query: 174 LAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
+A DL+ E +K L ++ TY L+ + G ++ ++KK + P+++T+N L
Sbjct: 604 MARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKKRG-VRPNVMTHNAL 662
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
+ + +D ++++ +SPN ++Y LI+ + W +V ++Y+ M +
Sbjct: 663 LHGMCKAGNIDEAYRYLCKMEEEGISPNKYSYTILISKHCDLDKWEEVVKLYKEMLDKEI 722
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
PD GY H +EK +E + GK+
Sbjct: 723 EPD---------GYTHRALFKHLEKDHESMALDSSGKQ 751
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 9/130 (6%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
+ T+ T+N +L + G ++ ++ ++K+ NI S VTYN LI+ F + ++
Sbjct: 271 MPTVITFNTMLDSCFKAGDLERVDKIWLEMKRR-NIEFSEVTYNILINGFSKSGKMEEAR 329
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWM----WGKVEEIYQMMKAGPVMPDTNTYLLL 302
+++ S +++N LI GY + WG +E M+ AG + P T+TY +
Sbjct: 330 RFHGDMQRSGFPVTPYSFNPLIEGYCKQGLFDEAWGVTDE---MLNAG-IYPTTSTYNIY 385
Query: 303 LRGYAHSGNL 312
+R G +
Sbjct: 386 IRALCEFGRI 395
Score = 38.1 bits (87), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 8/133 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF-- 249
TY LL ++ NG ++ ++ ++ I P Y T G L L D E AF
Sbjct: 482 TYTTLLKGFVKNGNLSMATEIYDEMLRKG-IKPDGYAYTT--RTVGELRLGDS-EKAFRL 537
Query: 250 --QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
+ + + + +P++ YN I G K E + + ++PD TY ++RGY
Sbjct: 538 HEEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIRGYL 597
Query: 308 HSGNLPRMEKIYE 320
G +Y+
Sbjct: 598 EKGRFKMARDLYD 610
>gi|168019305|ref|XP_001762185.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686589|gb|EDQ72977.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 237
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 21/176 (11%)
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
FRD+ A + P IVTYNT+I + R V ++ F++I + L P+V +YN LI+ ++
Sbjct: 3 FRDMV-NAGVDPDIVTYNTMIHICSRAGRVREAKSLFKKISEKGLVPDVASYNTLISMFI 61
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
K + YQ MK V PDT T+ +LL KH + E
Sbjct: 62 KRGEKQKALQYYQKMKTAGVTPDTVTFRILL-------------------KHSMLTAEGI 102
Query: 333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEK 388
AMI A+ D +I M+ K + +I VYAK +E + +
Sbjct: 103 AYNAMIYAFGNAGRVDEAVRISMEMQNKAVKA-DVITHTTVITVYAKMGLMEGVSR 157
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 18/169 (10%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I R V A LF + + K L + +YN L+ ++ G K ++ +K
Sbjct: 18 YNTMIHICSRAGRVREAKSLFKKISEKGLVPDVASYNTLISMFIKRGEKQKALQYYQKMK 77
Query: 218 KEANISPSIVT----------------YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV 261
A ++P VT YN +I FG VD E+++ + +V
Sbjct: 78 T-AGVTPDTVTFRILLKHSMLTAEGIAYNAMIYAFGNAGRVDEAVRISMEMQNKAVKADV 136
Query: 262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
T+ +I Y + V +Y+ MK PD TY L+ Y +SG
Sbjct: 137 ITHTTVITVYAKMGLMEGVSRVYKRMKRAQCEPDEVTYKQLIWIYKNSG 185
>gi|125548508|gb|EAY94330.1| hypothetical protein OsI_16098 [Oryza sativa Indica Group]
Length = 430
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI 190
R + ALEV W + + + +++ +Y I R+ + A D F E ++++
Sbjct: 121 AGRYKHALEVAEWMKTH--HESDLSENDYGMRIDLITRVFGANAAEDFF-EKLPACVQSL 177
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
Y ALL +Y + ++DK + LF+ +K +AN+S +I+ YN +++++ + +D + +
Sbjct: 178 EAYTALLHSYARSKMTDKAERLFKRMK-DANLSMNILVYNEMMTLYISVGELDKVPVIAE 236
Query: 251 EIKDSNLSPNVFTYNYLIAG 270
E+K SP++FTYN I+
Sbjct: 237 ELKRQKFSPDLFTYNLRISA 256
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 11/198 (5%)
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
S+ Y L+ + R + D E F+ +KD+NLS N+ YN ++ Y++ KV I
Sbjct: 176 SLEAYTALLHSYARSKMTDKAERLFKRMKDANLSMNILVYNEMMTLYISVGELDKVPVIA 235
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSK 343
+ +K PD TY L + A S +L + I E+ K + + L + + Y
Sbjct: 236 EELKRQKFSPDLFTYNLRISASAASMDLEGFKGILDEMSKDPNSNEGWKLYQNLAVIY-- 293
Query: 344 CSVTDRIKKIEALMRLIPEKEYRPWLN----VLLIRVYAKEDCLEEMEKSINDAFEHKTS 399
+ +L+ + R W+ V+L D ++++ KS+ + TS
Sbjct: 294 VDAGQLVGSGNSLVEAEAKISQREWITYDFLVILHTGLGNRDRIKDIWKSMLMTSQRMTS 353
Query: 400 VTTVRIMRCIVSSYFRCN 417
+ C++SSY C
Sbjct: 354 RNYI----CVLSSYLMCG 367
>gi|21740710|emb|CAD40831.1| OSJNBa0086B14.3 [Oryza sativa Japonica Group]
gi|116310079|emb|CAH67100.1| H0818E04.17 [Oryza sativa Indica Group]
Length = 430
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 77/140 (55%), Gaps = 4/140 (2%)
Query: 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI 190
R + ALEV W + + + +++ +Y I R+ + A D F E ++++
Sbjct: 121 AGRYKHALEVAEWMKTH--HESDLSENDYGMRIDLITRVFGANAAEDFF-EKLPACVQSL 177
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
Y ALL +Y + ++DK + LF+ +K +AN+S +I+ YN +++++ + +D + +
Sbjct: 178 EAYTALLHSYARSKMTDKAERLFKRMK-DANLSMNILVYNEMMTLYISVGELDKVPVIAE 236
Query: 251 EIKDSNLSPNVFTYNYLIAG 270
E+K SP++FTYN I+
Sbjct: 237 ELKRQKFSPDLFTYNLRISA 256
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 11/198 (5%)
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
S+ Y L+ + R + D E F+ +KD+NLS N+ YN ++ Y++ KV I
Sbjct: 176 SLEAYTALLHSYARSKMTDKAERLFKRMKDANLSMNILVYNEMMTLYISVGELDKVPVIA 235
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSK 343
+ +K PD TY L + A S +L + I E+ K + + L + + Y
Sbjct: 236 EELKRQKFSPDLFTYNLRISASAASMDLEGFKGILDEMSKDPNSNEGWKLYQNLAVIY-- 293
Query: 344 CSVTDRIKKIEALMRLIPEKEYRPWLN----VLLIRVYAKEDCLEEMEKSINDAFEHKTS 399
+ +L+ + R W+ V+L D ++++ KS+ + TS
Sbjct: 294 VDAGQLVGSGNSLVEAEAKISRREWITYDFLVILHTGLGNRDRIKDIWKSMLMTSQRMTS 353
Query: 400 VTTVRIMRCIVSSYFRCN 417
+ C++SSY C
Sbjct: 354 RNYI----CVLSSYLMCG 367
>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 6/192 (3%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEA-ANKHLKTIGTYNA 195
A+E+L +++ G + +T I R ++A L+ + A+ + T TYNA
Sbjct: 326 AVELLGKMKKR---GCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNA 382
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ G + ++F+ + ++ PS TYN +I F + + F ++ +
Sbjct: 383 LINQLCVEGRFETAFTIFKWMLSHGSL-PSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKA 441
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
SPNV TYN LI GY + ++MK + PD TY L+ G++ G L
Sbjct: 442 GSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHA 501
Query: 316 EKI-YELVKHHV 326
+ Y +++H +
Sbjct: 502 TSLFYGMMEHGI 513
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 126 LMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA 183
L+ QL R A + W + T E K G I + D +A
Sbjct: 383 LINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAG 442
Query: 184 NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
+ + TYN L+ Y G + L ++ K + P TY LIS F R ++
Sbjct: 443 SS--PNVITYNTLIYGYCKQGNLNNAMRLL-EIMKGNGLKPDAWTYTELISGFSRGGKLE 499
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE----IYQMMKAGPVMPDTNTY 299
H + F + + +SPN TY +I GY KV++ ++M+++G +P + TY
Sbjct: 500 HATSLFYGMMEHGISPNHVTYTAIIDGYFN---LAKVDDALALFWKMVESGN-LPSSQTY 555
Query: 300 LLLLRGYAHSGNLPRMEKI 318
+++ G++ + ++ E
Sbjct: 556 NVMISGFSKTNSISEAENF 574
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ + G + SLF + E ISP+ VTY +I + L VD A F +
Sbjct: 484 TYTELISGFSRGGKLEHATSLFYGMM-EHGISPNHVTYTAIIDGYFNLAKVDDALALFWK 542
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +S P+ TYN +I+G+ + E M ++P+ TY + G +G
Sbjct: 543 MVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGR 602
Query: 312 LPRMEKIYE 320
KI+
Sbjct: 603 TGLAFKIFH 611
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY A++ Y D +LF + + N+ PS TYN +IS F + + E +
Sbjct: 519 TYTAIIDGYFNLAKVDDALALFWKMVESGNL-PSSQTYNVMISGFSKTNSISEAENFCGK 577
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ L PNV TY I G G +I+ M+ P+ TY L+ G G
Sbjct: 578 MVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEG 636
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
+ I PS++T+NT+I++ + V + I + PN FTY LI G+
Sbjct: 196 SGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDL 255
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHVD 327
++ M P++ TY L+ G G L M+ + E+V+ ++
Sbjct: 256 AFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIE 304
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 68/304 (22%), Positives = 116/304 (38%), Gaps = 37/304 (12%)
Query: 36 FTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVRKDLTQTVSALRDELLAN 95
F L+ P+ S L +T FP LV +S L+ P +L L+ + N
Sbjct: 26 FNLSSEPHPS--SPLPISSTTNPFPELVSKISTILSSPKWEHSSELCHLSPKLKPHHVVN 83
Query: 96 V----DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRL--------ALEVLNW 143
+ + D V R F +H FV ++ +L R RL L + +
Sbjct: 84 ILQTHKNTDSVLRFFFWISRRKFFKHDMS-CFVSMLNRL-VRDRLFAPADHVRILMIKSC 141
Query: 144 RRR-------------QAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-T 189
R + Y T +T + G+ + VDLA D++ + N ++ +
Sbjct: 142 RNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPS 201
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ T+N ++ G + + + + + + P+ TY +LI R +D A F
Sbjct: 202 LLTFNTMINILCKKGRVQEAKLIMSHIFR-YDAYPNAFTYTSLILGHCRNHNLDLAFAMF 260
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRGY 306
+ PN TY+ LI G + G++EE M M + P TY + L
Sbjct: 261 DRMVKDGCDPNSVTYSTLINGLCSE---GRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSL 317
Query: 307 AHSG 310
+G
Sbjct: 318 CDAG 321
Score = 38.5 bits (88), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY +L+ + N D ++F + K+ P+ VTY+TLI+ ++ +E
Sbjct: 239 TYTSLILGHCRNHNLDLAFAMFDRMVKDG-CDPNSVTYSTLINGLCSEGRLEEAMDMLEE 297
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + P V+TY + A + E+ MK +P+ T+ L+ G + G
Sbjct: 298 MVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDG 356
>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 104/463 (22%), Positives = 185/463 (39%), Gaps = 80/463 (17%)
Query: 38 LTKSPNHSFTRDLCAPATHTV-FPTLVRL------LSETLT----------YPDARVRKD 80
L +P HS T+ P + + FP+L L L+ + + R +
Sbjct: 51 LPSTPGHSATKSTSTPLSQSPNFPSLCSLPTSKSELASNFSGRRSTRFVSKFHFGRPKSS 110
Query: 81 LTQTVSALRDELLANV-----DD--LDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSR 133
+T SA+ +E+L V DD LD + + K C S Y F L+++LG+R
Sbjct: 111 MTTRHSAIAEEVLHQVLQFGKDDASLDNILLNFESK-LC----GSEDYTF--LLRELGNR 163
Query: 134 PRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEA-ANKHLKTI 190
A+ ++ + G K + I GR+ V+LA +F A + + T+
Sbjct: 164 GECWKAIRCFDFALVREGRKNERGKLA-SAMISTLGRLGKVELAKGVFETALSEGYGNTV 222
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL-VDHMEAAF 249
++AL+ AY +G D+ +F +K + + P++VTYN +I G+ + + F
Sbjct: 223 FAFSALISAYGKSGYFDEAIKVFESMKV-SGLKPNLVTYNAVIDACGKGGVEFKRVVEIF 281
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+E+ + + P+ TYN L+A +W ++ M + D TY LL
Sbjct: 282 EEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLDAVCKG 341
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
G +M+ YE++ K P + M Y+K ++E + L E ++
Sbjct: 342 G---QMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAG------RLEDALNLYNEMKF- 391
Query: 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
L + L RV S N ++S Y + +
Sbjct: 392 --LGIGLDRV------------SYN----------------TLLSIYAKLGRFEDALKVC 421
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI 469
K S+G + Y++ + Y Q + E+ V KEM+ ++
Sbjct: 422 KEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRV 464
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 2/180 (1%)
Query: 170 NNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+DLA ++ E K L + TY+ + Y G + +L+ ++K I V+
Sbjct: 342 GQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKF-LGIGLDRVS 400
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YNTL+S++ +L + +E+ S + +V TYN L+ GY + +V +++ MK
Sbjct: 401 YNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMK 460
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
V P+ TY L+ Y+ +++ K + L +I A K + D
Sbjct: 461 KDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKNGLVD 520
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 16/201 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+LL GL + ++LF ++ + I + TYNTL+ + +D E
Sbjct: 295 TYNSLLAVCSRGGLWEAARNLFNEMI-DRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLE 353
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ + PNV TY+ + GY A G++E+ +Y MK + D +Y LL YA
Sbjct: 354 MPGKKILPNVVTYSTMADGYAKA---GRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAK 410
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G K+ + + K+ A++ Y K + + ++ M K+ R +
Sbjct: 411 LGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEM-----KKDRVF 465
Query: 369 LNVL----LIRVYAKEDCLEE 385
N+L LI VY+K EE
Sbjct: 466 PNLLTYSTLIDVYSKGSLYEE 486
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 175 AADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A ++F E LK + Y+ L+ A NGL D L ++ KE I P++VTYN++I
Sbjct: 487 AMEVFREFKQAGLKADVVLYSELINALCKNGLVDSAVLLLDEMTKEG-IRPNVVTYNSII 545
Query: 234 SVFGRL----LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA---WMWGKVEEIYQM 286
FGR LVD + A+ + + SP+ LI G + W G V + YQ
Sbjct: 546 DAFGRSTTAEFLVDGVGASNERQSE---SPSFM----LIEGVDESEINWDDGHVFKFYQQ 598
Query: 287 M---KAGP 291
+ K GP
Sbjct: 599 LVSEKEGP 606
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ Y L ++ +FR+ K +A + +V Y+ LI+ + LVD E
Sbjct: 470 TYSTLIDVYSKGSLYEEAMEVFREFK-QAGLKADVVLYSELINALCKNGLVDSAVLLLDE 528
Query: 252 IKDSNLSPNVFTYNYLIAGY 271
+ + PNV TYN +I +
Sbjct: 529 MTKEGIRPNVVTYNSIIDAF 548
>gi|357131125|ref|XP_003567192.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial-like, partial [Brachypodium distachyon]
Length = 457
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 168 RINNVDLAADLFAEAANKH---LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
R D A F E H + ++ +YN L+ A ++ L ++ + P
Sbjct: 183 RAKEFDALATAFQEIPASHPLVVPSVYSYNILISALCQKPALSAALNVV-TLMEKCGVLP 241
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-- 282
+++NTL++ F + VD EA ++ +K+ NL P+ +YN + G + G++E+
Sbjct: 242 DNISFNTLLNGFSKNGRVDDAEAVWEMMKERNLEPDTKSYNAKLRGLVAE---GRIEDAV 298
Query: 283 --IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHH 325
+ +M K GP PDT +Y L+RGY +G L +K+Y+ LVK+
Sbjct: 299 AVVERMEKEGP-KPDTVSYNELIRGYCSAGRLEDAKKLYDGLVKNE 343
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 8/140 (5%)
Query: 186 HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN-ISPSIVTYNTLISVFGRLLLVDH 244
LK T+NA+L AY D + F+++ + PS+ +YN LIS + +
Sbjct: 167 QLKCTMTFNAVLTAYSRAKEFDALATAFQEIPASHPLVVPSVYSYNILISALCQKPALSA 226
Query: 245 MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304
++ + P+ ++N L+ G+ E +++MMK + PDT +Y LR
Sbjct: 227 ALNVVTLMEKCGVLPDNISFNTLLNGFSKNGRVDDAEAVWEMMKERNLEPDTKSYNAKLR 286
Query: 305 GYAHSGNL-------PRMEK 317
G G + RMEK
Sbjct: 287 GLVAEGRIEDAVAVVERMEK 306
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 8/179 (4%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
++N LL + NG D ++++ ++ KE N+ P +YN + ++ A +
Sbjct: 245 SFNTLLNGFSKNGRVDDAEAVW-EMMKERNLEPDTKSYNAKLRGLVAEGRIEDAVAVVER 303
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ P+ +YN LI GY +A +++Y + P+ TY LL +G
Sbjct: 304 MEKEGPKPDTVSYNELIRGYCSAGRLEDAKKLYDGLVKNECAPNKGTYETLLPRLLQAGE 363
Query: 312 LP-RMEKIYELVKHHVDG--KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
L + +EL ++ + L++ ++ + S D KI L R K+Y P
Sbjct: 364 LDCALRYCHELFSSNIKSCRVDCSLLQDVVTTLVEASRVDEAAKIVELGR----KKYYP 418
>gi|356503236|ref|XP_003520417.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g02150-like [Glycine max]
Length = 555
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 71/355 (20%), Positives = 154/355 (43%), Gaps = 16/355 (4%)
Query: 116 RHSNGYAFVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVD 173
RH + ++K+L R ALEV +W + +++ + + ++ V
Sbjct: 108 RHLTKWELSRVVKELRKYKRFPRALEVYDWMNNRPERFR-VSESDAAIQLDLIAKVRGVS 166
Query: 174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A F +K LK TY ALL Y+++ +K +SLF ++ + + ++ N ++
Sbjct: 167 SAEAFFLSLEDK-LKDKRTYGALLNVYVHSRSKEKAESLFDTMRSKGYVIHAL-PINVMM 224
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP-V 292
+++ L ++ E+ + N+ +++TYN ++ + K+E++++ M+ P +
Sbjct: 225 TLYMNLNEYAKVDMLASEMMEKNIQLDIYTYNIWLSSCGSQGSVEKMEQVFEQMERDPTI 284
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352
+P+ +T+ L Y + EK V+ + G++ ++ Y D + +
Sbjct: 285 VPNWSTFSTLASMYIRMNQNEKAEKCLRKVEGRIKGRDRIPFHYLLSLYGSVGKKDEVYR 344
Query: 353 I----EALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC 408
+ +++ IP Y +I K D +E EK + K+S RI
Sbjct: 345 VWNTYKSIFPRIPNLGYHA-----IISSLVKLDDIEGAEKLYEEWISVKSSYDP-RIGNL 398
Query: 409 IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463
++ Y + + DK +F ++ + G + + + + +R+ E S LKE
Sbjct: 399 LMGWYVKKDDTDKALSFFEQISNDGCIPNSNTWEILSEGHIADKRISEALSCLKE 453
>gi|302819880|ref|XP_002991609.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
gi|300140642|gb|EFJ07363.1| hypothetical protein SELMODRAFT_133813 [Selaginella moellendorffii]
Length = 356
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 92/199 (46%), Gaps = 2/199 (1%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKC 209
G +T Y I + ++D ++ E + L+ + ++NAL+ AY + ++
Sbjct: 93 GVALTLRSYNVVICAFTKEGSIDKVEEVIREMIRQELRPDLFSFNALIAAYAMSRKPERG 152
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+F ++K A + P IVTY TLI +F R + F+E+ + P+ F Y+ L++
Sbjct: 153 LQVFSNMKA-AGVLPDIVTYTTLIQMFSRSSMHKEAIEMFEEMVVNKCQPDFFVYSLLVS 211
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329
Y A + I+ ++ P+ TY L+ + H G L K + ++ +
Sbjct: 212 VYGKAGLVADALLIFHRLQLEGHRPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRA 271
Query: 330 EFPLIRAMICAYSKCSVTD 348
+ L+ MI AY+K + +
Sbjct: 272 DVHLLNTMIDAYAKAGMVN 290
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 2/155 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I+ R + A ++F E NK Y+ L+ Y GL +F L+
Sbjct: 171 YTTLIQMFSRSSMHKEAIEMFEEMVVNKCQPDFFVYSLLVSVYGKAGLVADALLIFHRLQ 230
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E + P+IVTY +LIS L++ F +++ +V N +I Y A M
Sbjct: 231 LEGH-RPNIVTYTSLISAHLHKGLLEESRKHFSQMEAYGCRADVHLLNTMIDAYAKAGMV 289
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ + A V P+ +Y +++ G+ H+G++
Sbjct: 290 NDAANLLHRLTAQGVCPNRASYAIIVEGFLHAGHV 324
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 14/152 (9%)
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSN---LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
++ + R L++ E FQ IK + L P YN +IA Y A ++Y M
Sbjct: 2 VLGILSRARLIEDAEELFQWIKLQDWDKLRP----YNAMIAAYYQAKRPKDAWDVYHQML 57
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
A + PD TY +L+ G +G P +++++ +K +ICA++K
Sbjct: 58 AEGIDPDEVTYDILVSGSGKNG-YP-IDRLFLEIKSRGVALTLRSYNVVICAFTK---EG 112
Query: 349 RIKKIEALMRLIPEKEYRPWLNVL--LIRVYA 378
I K+E ++R + +E RP L LI YA
Sbjct: 113 SIDKVEEVIREMIRQELRPDLFSFNALIAAYA 144
>gi|293336604|ref|NP_001168600.1| uncharacterized protein LOC100382384 [Zea mays]
gi|223949449|gb|ACN28808.1| unknown [Zea mays]
Length = 536
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 133/314 (42%), Gaps = 32/314 (10%)
Query: 84 TVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNW 143
T A+R+E+ +D + F+ E G C+ R N RP L L +
Sbjct: 31 TPQAVREEVDGFLDSRKRAFKW--EVGVCVRRMRRNAL----------YRPSLKLSEVMA 78
Query: 144 RRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF---AEAANKHLKTIGTYNALLGAY 200
RR G T + + + + A F E + HL TY ALL +Y
Sbjct: 79 RR-----GMNPTVSDQAIRLDLIAKSRGIAAAEKYFLDLPETSKTHL----TYGALLNSY 129
Query: 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN 260
+++K +SL +K E N + + +++N+L++++ ++ + + + Q++K ++ P+
Sbjct: 130 CKELMTEKAESLMEKMK-ELNFAFTAMSFNSLMTMYTKVNQAEKVPSIIQDMKADDVLPD 188
Query: 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMK-AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
VFTYN + VE + + MK G V PD TY L Y +G + E
Sbjct: 189 VFTYNVWMRALAALKDIPGVERVIEEMKRDGRVAPDWTTYSNLASIYVEAGMFEKAEAAL 248
Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRLIPEKEYRPWLNVL-----L 373
+ ++ + + +I Y + + ++ +L R P +LN++ L
Sbjct: 249 KELEKRNTSNDIEAYQFLITLYGRTQNLVEVHRVWRSLKRDNPRMANMSYLNMIQVLANL 308
Query: 374 IRVYAKEDCLEEME 387
+ A E C +E E
Sbjct: 309 KDLSAAEACFKEWE 322
>gi|125590560|gb|EAZ30910.1| hypothetical protein OsJ_14991 [Oryza sativa Japonica Group]
Length = 471
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 77/138 (55%), Gaps = 4/138 (2%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG 191
R + ALEV W + + + +++ +Y I R+ + A D F E ++++
Sbjct: 163 GRYKHALEVAEWMKTH--HESDLSENDYGMRIDLITRVFGANAAEDFF-EKLPACVQSLE 219
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y ALL +Y + ++DK + LF+ +K +AN+S +I+ YN +++++ + +D + +E
Sbjct: 220 AYTALLHSYARSKMTDKAERLFKRMK-DANLSMNILVYNEMMTLYISVGELDKVPVIAEE 278
Query: 252 IKDSNLSPNVFTYNYLIA 269
+K SP++FTYN I+
Sbjct: 279 LKRQKFSPDLFTYNLRIS 296
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 11/198 (5%)
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
S+ Y L+ + R + D E F+ +KD+NLS N+ YN ++ Y++ KV I
Sbjct: 217 SLEAYTALLHSYARSKMTDKAERLFKRMKDANLSMNILVYNEMMTLYISVGELDKVPVIA 276
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSK 343
+ +K PD TY L + A S +L + I E+ K + + L + + Y
Sbjct: 277 EELKRQKFSPDLFTYNLRISASAASMDLEGFKGILDEMSKDPNSNEGWKLYQNLAVIY-- 334
Query: 344 CSVTDRIKKIEALMRLIPEKEYRPWLN----VLLIRVYAKEDCLEEMEKSINDAFEHKTS 399
+ +L+ + R W+ V+L D ++++ KS+ + TS
Sbjct: 335 VDAGQLVGSGNSLVEAEAKISRREWITYDFLVILHTGLGNRDRIKDIWKSMLMTSQRMTS 394
Query: 400 VTTVRIMRCIVSSYFRCN 417
+ C++SSY C
Sbjct: 395 RNYI----CVLSSYLMCG 408
>gi|115463017|ref|NP_001055108.1| Os05g0294600 [Oryza sativa Japonica Group]
gi|113578659|dbj|BAF17022.1| Os05g0294600 [Oryza sativa Japonica Group]
gi|125551683|gb|EAY97392.1| hypothetical protein OsI_19323 [Oryza sativa Indica Group]
gi|215697097|dbj|BAG91091.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630985|gb|EEE63117.1| hypothetical protein OsJ_17925 [Oryza sativa Japonica Group]
Length = 757
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L+ AY ++ + +F ++ KE +S + +TYN L+ + R L + +E+ E+
Sbjct: 412 YNTLINAYCKANQIEEAEGVFVEM-KEKGLSATAMTYNILMGAYCRRLQPEVVESLLLEM 470
Query: 253 KDSNLSPNVFTYNYLIAGY-MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+D L PN +YN+LI Y M K E+ + MK +MP ++TY LL YA +G
Sbjct: 471 QDLGLRPNARSYNFLIRVYGQQKKMSEKAEDAFLRMKTDGIMPTSSTYTSLLCAYAVNG 529
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 4/164 (2%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+ N ++ A +F E K L T TYN L+GAY + +SL ++ ++ + P+
Sbjct: 421 KANQIEEAEGVFVEMKEKGLSATAMTYNILMGAYCRRLQPEVVESLLLEM-QDLGLRPNA 479
Query: 227 VTYNTLISVFGRL-LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+YN LI V+G+ + + E AF +K + P TY L+ Y + K Y
Sbjct: 480 RSYNFLIRVYGQQKKMSEKAEDAFLRMKTDGIMPTSSTYTSLLCAYAVNGLHEKAYLTYV 539
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHVDG 328
MK + P TY L+ + +G+ + ME ++ V G
Sbjct: 540 DMKREGLKPSLETYTALIDMFRRAGDTEKLMETWRSMINEKVPG 583
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 122/297 (41%), Gaps = 16/297 (5%)
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
+L+ + NGL + + ++K+ I+ + YNTLI+ + + ++ E F E+K+
Sbjct: 379 SLIKIFCDNGLKTEALIIQSAMEKKG-IASNTSMYNTLINAYCKANQIEEAEGVFVEMKE 437
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
LS TYN L+ Y VE + M+ + P+ +Y L+R Y G +
Sbjct: 438 KGLSATAMTYNILMGAYCRRLQPEVVESLLLEMQDLGLRPNARSYNFLIRVY---GQQKK 494
Query: 315 MEKIYE--LVKHHVDG--KEFPLIRAMICAYSKCSVTDRIKKIEALMR---LIPEKEYRP 367
M + E ++ DG +++CAY+ + ++ M+ L P E
Sbjct: 495 MSEKAEDAFLRMKTDGIMPTSSTYTSLLCAYAVNGLHEKAYLTYVDMKREGLKPSLETYT 554
Query: 368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
L + R E +E IN+ T V ++ + A D + F +
Sbjct: 555 ALIDMFRRAGDTEKLMETWRSMINEKVP-GTRVIFHMVLDGLAKHGLYVQATDVIYEFRR 613
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
AG + Y+ M +A + ++ +LKEM ++ T+ M YAYA
Sbjct: 614 ----AGLQPTVMTYNILMNAFARGGQHYKLPQLLKEMAAMELKPDSVTYSTMIYAYA 666
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 180 AEAANKHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
AE A +KT G TY +LL AY NGL +K + D+K+E + PS+ TY LI
Sbjct: 499 AEDAFLRMKTDGIMPTSSTYTSLLCAYAVNGLHEKAYLTYVDMKREG-LKPSLETYTALI 557
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPV 292
+F R + + ++ + + + ++ ++ G ++ + + IY+ +AG +
Sbjct: 558 DMFRRAGDTEKLMETWRSMINEKVPGTRVIFHMVLDGLAKHGLYVQATDVIYEFRRAG-L 616
Query: 293 MPDTNTYLLLLRGYAHSGN---LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
P TY +L+ +A G LP++ K ++ D + MI AY++ R
Sbjct: 617 QPTVMTYNILMNAFARGGQHYKLPQLLKEMAAMELKPDSVTYS---TMIYAYARVRDFSR 673
Query: 350 IKKIEALM----RLIPEKEYRPWLNVLLIRVYAK 379
LM +L Y+ LN L ++ K
Sbjct: 674 AFYYHKLMVRSGQLPDVSSYKKLLNTLDVKAARK 707
>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
Length = 899
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 95/237 (40%), Gaps = 17/237 (7%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRP-RLALEVLNWRRRQAGY-----------GTPMTK 156
+G C N + E+M+Q G P A VL ++G G +TK
Sbjct: 447 QGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSFLVRKGVVLTK 506
Query: 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRD 215
YT + + N D AA L + N+ K TY+ LL A ++ S+ D
Sbjct: 507 VTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKLNEALSIL-D 565
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ + +IV Y +IS + DH ++ F E+ S P+ TY I+ Y
Sbjct: 566 QMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSATTYTVFISSYCKIG 625
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
+ E + M+ V PD TY + + G H G M++ + +K +D P
Sbjct: 626 QIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMG---YMDRAFSTLKRMIDASCEP 679
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 103/232 (44%), Gaps = 25/232 (10%)
Query: 118 SNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAAD 177
++ Y + L++ L + +L E L+ + G YT I + D A
Sbjct: 539 ADSYTYSVLLQALCKQKKLN-EALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKS 597
Query: 178 LFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
+F E ++ H + TY + +Y G ++ + L +++++ ++P +VTYN I+
Sbjct: 598 MFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDG-VAPDVVTYNVFINGC 656
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM-------------TAWMWGKVEEI 283
G + +D + + + D++ PN +TY L+ ++ W W +++ +
Sbjct: 657 GHMGYMDRAFSTLKRMIDASCEPNYWTYWILLKHFLKMSLVDAHYVDTSGMWNWIELDTV 716
Query: 284 YQ----MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
+Q M+K G + P TY ++ G+ + L +++ H+ GK+
Sbjct: 717 WQLLERMVKHG-LNPTAVTYSSIIAGFCKATRLEEACVLFD----HMRGKDI 763
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 115/285 (40%), Gaps = 10/285 (3%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
AN + Y +++ Y G +FR ++ E P+ TY++LI + +
Sbjct: 362 ANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEG-CRPNAWTYSSLIYGLIQDQKL 420
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
A ++++ ++P V TY LI G + +++MM+ + PD Y +L
Sbjct: 421 HKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVL 480
Query: 303 LRGYAHSGNLPRMEKIYE-LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIP 361
SG R E+ Y LV+ V + +++ +SK TD + + +++
Sbjct: 481 THALCKSG---RAEEAYSFLVRKGVVLTKVTYT-SLVDGFSKAGNTDFAAVL--IEKMVN 534
Query: 362 EK-EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420
E + + +L++ K+ L E SI D + I+S + D
Sbjct: 535 EGCKADSYTYSVLLQALCKQKKLNE-ALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHD 593
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+ S+G + + Y + Y ++EE E ++ EME
Sbjct: 594 HAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEME 638
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 85/202 (42%), Gaps = 17/202 (8%)
Query: 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN-VDLAADLFAEAANKHLKT 189
G +P A E+LN + T +T G A RI++ + + + + L+
Sbjct: 277 GEKPDEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSNCKLDLQA 336
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN------ISPSIVTYNTLISVFGRLLLVD 243
G + N L KC+ F++ K+ + ++P++V Y ++I + ++ V
Sbjct: 337 YGV--------LINVLIKKCR--FKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVG 386
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
F+ ++ PN +TY+ LI G + K + M+ + P TY L+
Sbjct: 387 AALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLI 446
Query: 304 RGYAHSGNLPRMEKIYELVKHH 325
+G +++E+++ +
Sbjct: 447 QGQCKKHEFDNAFRLFEMMEQN 468
Score = 38.5 bits (88), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 52/290 (17%), Positives = 106/290 (36%), Gaps = 15/290 (5%)
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
+N + Y LI+V + + E+ + L+PNV Y +I GY G
Sbjct: 328 SNCKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGA 387
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
E++++M+ P+ TY L+ G L + + + K DG +I
Sbjct: 388 ALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMAL--ITKMQEDGITPGVITYTTL 445
Query: 340 AYSKCSVTD-----RIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAF 394
+C + R+ ++ L P+++ L L + E+ + +
Sbjct: 446 IQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTHALCKSGRAEEAYSFLVR------ 499
Query: 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454
K V T +V + + D A +++ + G + Y + Q+++
Sbjct: 500 --KGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADSYTYSVLLQALCKQKKL 557
Query: 455 EEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
E S+L +M + C+ + I+ G+ + M +G+
Sbjct: 558 NEALSILDQMTLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGH 607
>gi|168006155|ref|XP_001755775.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693094|gb|EDQ79448.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 429
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 128/279 (45%), Gaps = 35/279 (12%)
Query: 170 NNVDLAADLFAEAANKHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANIS 223
N VD A A + LK+ G ++N ++ Y G+ +K + D+K +
Sbjct: 59 NYVDHQMAQKAGALLEKLKSTGLLTLPFSFNQMMLLYKRKGMENKLPEILEDMKAHG-VP 117
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIK-DSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
+ TYN L+ V R ++ ME F+E+K D N+ + T+ L + A + K +
Sbjct: 118 KDVYTYNILMDVKSRSGDIEGMEKIFEELKADENVKADAATFGTLATACVHAGLLEKAKV 177
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR-----AM 337
+ M+ G + + + Y +L+ Y G++ +E+++E VK P++ +
Sbjct: 178 YLKEMEEGDIFRNRSAYDILISQYGAVGDVDGVERVWEKVKSG------PIVSNRSYITV 231
Query: 338 ICAYSKCSVTDRIKKIEALMR----LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA 393
I A+ K + ++ +++ +M LI +++ L+ Y ++ +++ EK ++D
Sbjct: 232 IEAFGKLGMVEKAEELYEVMSQSKGLILSRQFNS-----LLSAYTRQGLMDKAEKLMDDM 286
Query: 394 FE---HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429
+ K ++T +V+ Y + + +DK +K A
Sbjct: 287 EKLGRKKNAIT----YHHLVTGYLKTDQLDKAVAAMKEA 321
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/273 (19%), Positives = 106/273 (38%), Gaps = 39/273 (14%)
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
+ Y+TL+ + + A +++K + L F++N ++ Y M K+ EI +
Sbjct: 51 LAYHTLLKNYVDHQMAQKAGALLEKLKSTGLLTLPFSFNQMMLLYKRKGMENKLPEILED 110
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH----HVDGKEFPLIRA------ 336
MKA V D TY +L+ + SG++ MEKI+E +K D F +
Sbjct: 111 MKAHGVPKDVYTYNILMDVKSRSGDIEGMEKIFEELKADENVKADAATFGTLATACVHAG 170
Query: 337 --------------------------MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+I Y D ++++ ++ P R ++
Sbjct: 171 LLEKAKVYLKEMEEGDIFRNRSAYDILISQYGAVGDVDGVERVWEKVKSGPIVSNRSYIT 230
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
V I + K +E+ E+ + + + R ++S+Y R +DK + E
Sbjct: 231 V--IEAFGKLGMVEKAEE-LYEVMSQSKGLILSRQFNSLLSAYTRQGLMDKAEKLMDDME 287
Query: 431 SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463
G + YH + Y ++++ + +KE
Sbjct: 288 KLGRKKNAITYHHLVTGYLKTDQLDKAVAAMKE 320
>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 103/221 (46%), Gaps = 12/221 (5%)
Query: 96 VDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRL--ALEVLNWRRRQAGYGTP 153
+ D K+F + EKG + ++ L+ L + +L A+++ + Y P
Sbjct: 201 IGDAFKIFETMLEKG-----KRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEP 255
Query: 154 --MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS 211
+T +G+ GR++ D E + + T + L+G Y+ +G+ DK
Sbjct: 256 DVITFNTVIQGLCKEGRLDKAVEIYDTMIERGS--FGNLFTCHILIGEYIKSGIIDKAME 313
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
L++ + K + PS TY+ +I F ++ +++ + F +K S LSP +F YN L+A
Sbjct: 314 LWKRVHK-LGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASL 372
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ ++Q MK PDT ++ +++ G +G++
Sbjct: 373 CKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDI 413
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 111/267 (41%), Gaps = 10/267 (3%)
Query: 172 VDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
V+ A L E K L+ + Y+ L+ + G D+ ++LF ++ E ISP++V Y+
Sbjct: 61 VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEML-EKGISPNVVVYS 119
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
LI+ F + L A + + + P+V+TY +I G K +++ +M
Sbjct: 120 CLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEK 179
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI 350
P T TY +L+ G G + KI+E + GK ++ C+
Sbjct: 180 GEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEK--GKRLEVVSYNTLIMGLCNNGKLD 237
Query: 351 KKIEALMRLIPEKEY-RPWLNVLLIRVYAKEDCLE-EMEKSIN--DAFEHKTSVTTVRIM 406
+ ++ L+ + Y P +V+ + C E ++K++ D + S +
Sbjct: 238 EAMKLFSSLLEDGNYVEP--DVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTC 295
Query: 407 RCIVSSYFRCNAVDKLANFVKRAESAG 433
++ Y + +DK KR G
Sbjct: 296 HILIGEYIKSGIIDKAMELWKRVHKLG 322
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ G ++ L ++K++ + +V Y+TLIS F +D +A F E
Sbjct: 47 TYCILMDGLCKEGRVEEAMRLLGEMKRKG-LEVDVVVYSTLISGFCSKGCLDRGKALFDE 105
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + +SPNV Y+ LI G+ +W + + M + PD TY ++ G G
Sbjct: 106 MLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGR 165
Query: 312 LPRMEKIYELV 322
+ +++L+
Sbjct: 166 ARKALDLFDLM 176
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ ++ + + + + LF +K + +SP++ YNTL++ + ++ FQE
Sbjct: 329 TYSVMIDGFCKMHMLNFAKGLFSRMKI-SGLSPTLFDYNTLMASLCKESSLEQARRLFQE 387
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299
+K+SN P+ ++N +I G + A +E+ M+ + PD TY
Sbjct: 388 MKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTY 435
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K NI P IV+YNT+I+ + ++ E++ S+ PN FTY L+ G
Sbjct: 2 KRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKE--- 58
Query: 278 GKVEEIYQM---MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
G+VEE ++ MK + D Y L+ G+ G L R + +++
Sbjct: 59 GRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFD 104
Score = 46.2 bits (108), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 83/186 (44%), Gaps = 6/186 (3%)
Query: 143 WRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYM 201
W+R G + Y+ I +++ ++ A LF+ L T+ YN L+ +
Sbjct: 315 WKRVHK-LGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLC 373
Query: 202 YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV 261
++ + LF+++K E+N P +++N +I + + + +++ L+P+
Sbjct: 374 KESSLEQARRLFQEMK-ESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDA 432
Query: 262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321
+TY+ I + + + M A + PD + Y L++G+ + +E++ L
Sbjct: 433 YTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLN---DEIEEVINL 489
Query: 322 VKHHVD 327
++ D
Sbjct: 490 LRQMAD 495
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 38/229 (16%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG 191
R R AL++ + + + +T G+ G I + + E K L+ +
Sbjct: 164 GRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKG-KRLEVV- 221
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEAN-ISPSIVTYNTLI----------------- 233
+YN L+ NG D+ LF L ++ N + P ++T+NT+I
Sbjct: 222 SYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYD 281
Query: 234 -----SVFGRLL-------------LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
FG L ++D ++ + L P+ TY+ +I G+
Sbjct: 282 TMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMH 341
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
M + ++ MK + P Y L+ +L + ++++ +K
Sbjct: 342 MLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKE 390
>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
Length = 716
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N L+ Y G +K +L +++ E I P++VTYNT+I R V+ F E
Sbjct: 304 TFNPLITGYFARGSVEKAGALQLEMENEG-IVPTVVTYNTIIHGMFRSGNVEAARMKFVE 362
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ L P++ TYN LI GY A + ++ +K + P TY +LL GY G+
Sbjct: 363 MRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGD 422
Query: 312 L 312
L
Sbjct: 423 L 423
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 168 RINNVDLAADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R NV+ A F E A L + TYN+L+ Y G + LF DLK+ A ++PS+
Sbjct: 349 RSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKR-AGLAPSV 407
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
+TYN L+ + RL ++ QE+ + P+V TY L+ G V E +
Sbjct: 408 LTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDE 467
Query: 287 MKAGPVMPDTNTY 299
M + + PD Y
Sbjct: 468 MLSKGLQPDCFAY 480
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 104/237 (43%), Gaps = 25/237 (10%)
Query: 94 ANVDDLDKVFRVLDEK-GSCL-----FRRHSNGYAF---VELMKQLGSRPRLALEVLNWR 144
VD K+ R ++ + G CL + NG A +E QL R R++ +
Sbjct: 245 GRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMS------K 298
Query: 145 RRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYN 203
+ A P+ + +G +V+ A L E N+ + T+ TYN ++ +
Sbjct: 299 KASAFTFNPLITGYFARG--------SVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRS 350
Query: 204 GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263
G + + F +++ + P ++TYN+LI+ + + + F ++K + L+P+V T
Sbjct: 351 GNVEAARMKFVEMRA-MGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLT 409
Query: 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
YN L+ GY + Q M PD +TY +L+ G NL + + ++
Sbjct: 410 YNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFD 466
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY + AY G F+ + +E + P+ VTYN LI R+ + F E
Sbjct: 584 TYTVFIHAYCRRGNLYSAYGWFQKMLEEG-VRPNEVTYNVLIHALCRMGRTNLAYQHFHE 642
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
+ + LSPN +TY LI G W + +Y M + PD T+ L +G+
Sbjct: 643 MLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFKGF 697
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ A+ G + + +F D + + PS VTY I + R + FQ+
Sbjct: 549 TYTCLIHAHCERGRLREARDIF-DGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQK 607
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ----MMKAGPVMPDTNTYLLLLRGYA 307
+ + + PN TYN LI G+ YQ M++ G + P+ TY LL+ G
Sbjct: 608 MLEEGVRPNEVTYNVLIHALCR---MGRTNLAYQHFHEMLERG-LSPNKYTYTLLIDGNC 663
Query: 308 HSGNLPRMEKIYELVKHH 325
GN ++Y + H
Sbjct: 664 KEGNWEEAIRLYSEMHQH 681
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 70/132 (53%), Gaps = 1/132 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T YN+L+ A++ G + K +++R + ++ + P T+N L++ F + VD +
Sbjct: 88 TASAYNSLIDAFVKAGYTQKALAVYR-VMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKL 146
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F+E+++ N SPNV TY+ LI K +++ MK+ P+ TY ++ G
Sbjct: 147 FEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGK 206
Query: 309 SGNLPRMEKIYE 320
SG++ + ++E
Sbjct: 207 SGHVDKAFFLFE 218
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I G+ +VD A LF E ++ L T YN+L+ +G +D LFR++
Sbjct: 197 YTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREML 256
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + P VT+ +L+ G FQE +D + +V YN LI +
Sbjct: 257 SKG-LQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRL 315
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ EI+ ++ ++PD T+ L+ G SG +
Sbjct: 316 DEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRI 350
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 1/128 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N L+ A+ D LF +++ + N SP+++TY+ LI + V+ F +
Sbjct: 126 TFNVLMNAFKKAKRVDSVWKLFEEMQNQ-NCSPNVITYSILIDAVCKCGGVEKALKVFLD 184
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K PN+FTY +I G + K +++ M + ++ Y L+ G SG
Sbjct: 185 MKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGR 244
Query: 312 LPRMEKIY 319
K++
Sbjct: 245 ADAAAKLF 252
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 2/150 (1%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
VD LF E N++ + TY+ L+ A G +K +F D+K P+I TY
Sbjct: 140 VDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRG-CRPNIFTYT 198
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
++I G+ VD F+E+ L YN LI G + ++++ M +
Sbjct: 199 SMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSK 258
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ PD T+ L+ G +G +I++
Sbjct: 259 GLQPDHVTFTSLVYGLGVAGRASEARRIFQ 288
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 8/161 (4%)
Query: 172 VDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
+D A ++F E L + T+NAL+ +G L D+K+ A +P + YN
Sbjct: 315 LDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKR-AGCTPDVTVYN 373
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK-- 288
TLI + V+ E++ P+V TYN LI + G++E+ ++ +
Sbjct: 374 TLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLID---ESCKGGRIEDALRLFEEI 430
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH-VDG 328
+ +T TY +L G +G + K++ +K VDG
Sbjct: 431 SAKGFANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDG 471
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 2/153 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
+ V+ A +F + ++ + I TY +++ +G DK LF ++ E ++ +
Sbjct: 171 KCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRV 230
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
V YN+LI GR D F+E+ L P+ T+ L+ G A + I+Q
Sbjct: 231 V-YNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQE 289
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ D N Y +L+ S L +I+
Sbjct: 290 ARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIF 322
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 14/149 (9%)
Query: 170 NNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
V+ A E NK L I TYN+++ Y +G K Q + + +SP ++T
Sbjct: 485 GQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVN-KVSPDLIT 543
Query: 229 YNTLISVFGRLLLVDHMEAAFQ---EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE--- 282
YNTLI + + D M AF+ ++ + P+V TYN LI G+ + G V+E
Sbjct: 544 YNTLIHGY---IKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFS---VHGNVQEAGW 597
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
I++ M A + PD TY+ ++ G+ +GN
Sbjct: 598 IFEKMCAKGIEPDRYTYMSMINGHVTAGN 626
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
+D A LF N+ L+ I TYN L+ G DK L+ D+ I P+ VTY+
Sbjct: 417 LDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSR-EIFPNHVTYS 475
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
LI V+ E+ + + PN+ TYN +I GY + K ++ Q M
Sbjct: 476 ILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVN 535
Query: 291 PVMPDTNTYLLLLRGY 306
V PD TY L+ GY
Sbjct: 536 KVSPDLITYNTLIHGY 551
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 4/153 (2%)
Query: 174 LAADLF--AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
LAAD + ++N + T T N ++ Y DK ++ +++K + P +VT+N
Sbjct: 139 LAADAYRLVFSSNSEVNTY-TLNIMVHNYCKALEFDKVDAVISEMEKRC-VFPDVVTHNV 196
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
++ R + A + L P + TYN ++ G + MW K E+++ M
Sbjct: 197 MVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFG 256
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
V PD ++ +L+ G+ G + KIY+ ++H
Sbjct: 257 VAPDVRSFTILIGGFCRVGEIEEALKIYKEMRH 289
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 2/154 (1%)
Query: 168 RINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R ++D A DL+ + ++ + TY+ L+ ++ G + F D I P+I
Sbjct: 448 RQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFG-FLDEMINKGILPNI 506
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
+TYN++I + R V + Q++ + +SP++ TYN LI GY+ ++ M
Sbjct: 507 MTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNM 566
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
M+ V PD TY +L+ G++ GN+ I+E
Sbjct: 567 MEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFE 600
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
++ L+G + G ++ ++++++ I P +V+++ LI +F R +DH A +E
Sbjct: 263 SFTILIGGFCRVGEIEEALKIYKEMRHRG-IKPDLVSFSCLIGLFARRGKMDHAMAYLRE 321
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
++ L P+ Y +I G+ A + + M +PD TY LL G
Sbjct: 322 MRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 375
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ A G ++ +L + + + P IVTYN+++ R + D F+E
Sbjct: 193 THNVMVDARFRAGDAEAAMALVDSMVSKG-LKPGIVTYNSVLKGLCRSGMWDKAWEVFKE 251
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ D ++P+V ++ LI G+ G++EE IY+ M+ + PD ++ L+ +A
Sbjct: 252 MDDFGVAPDVRSFTILIGGFCRV---GEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFAR 308
Query: 309 SGNL 312
G +
Sbjct: 309 RGKM 312
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFR--D 215
Y IK R NV + NK + TYN L+ Y+ DK F+ +
Sbjct: 509 YNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIK---EDKMHDAFKLLN 565
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ ++ + P +VTYN LI+ F V F+++ + P+ +TY +I G++TA
Sbjct: 566 MMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTA- 624
Query: 276 MWGKVEEIYQM 286
G +E +Q+
Sbjct: 625 --GNSKEAFQL 633
>gi|255661168|gb|ACU25753.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 352
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRL 311
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 58/308 (18%), Positives = 122/308 (39%), Gaps = 36/308 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 11 TYSTLITHFGKEGLFDAALSWLQKMEQD-RVPGDLVLYSNLIELSRKLCDYSKAISIFSR 69
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S +P++ YN +I + A ++ + + M+ V P+T +Y LL Y +
Sbjct: 70 LKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTTSYSTLLTMYVENKK 129
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 130 FLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 189
Query: 372 LLIRVYAKEDCLEE------------MEKSI----------NDAFEHKTSVTTVRIMR-- 407
LL RVY + E +E+++ EH+ + ++ M+
Sbjct: 190 LL-RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNR 248
Query: 408 ----------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
I+S + + +D+ A ++ S+G + + LY + +V Y V
Sbjct: 249 GIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA 308
Query: 458 ESVLKEME 465
+ +L E++
Sbjct: 309 KRLLHELK 316
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 79/166 (47%), Gaps = 22/166 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 197 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG-IEPN 253
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + Y +I Y A + + +
Sbjct: 254 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLH 313
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+K +P D ++L A +G R+E+ + + +D E
Sbjct: 314 ELKRPDNIPRDIAIHIL-----AGAG---RIEEATWVFRQAIDAGE 351
>gi|255661156|gb|ACU25747.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 426
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNXMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRL 311
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 110/244 (45%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN ++ Y +K +L ++++ I P+
Sbjct: 197 AELFGEAI--HLFRLMQRKNIEQNVVTYNXMMMIYGKTLEHEKANNLIQEMQNRG-IEPN 253
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + Y +I Y A + + +
Sbjct: 254 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLH 313
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P D ++L A +G R+E+ + + +D K+ + MI +
Sbjct: 314 ELKRPDNIPRDIAIHIL-----AGAG---RIEEATWVFRQAIDAGEVKDITVFERMIHLF 365
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTS 399
SK + ++ MR + Y P NV L++ Y K L E +K+ ND +
Sbjct: 366 SKYKKYGNVVEVFDKMRGLG---YFPDSNVIALVLNAYGK---LHEFDKA-NDVYMEMQE 418
Query: 400 VTTV 403
V V
Sbjct: 419 VGCV 422
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 116/269 (43%), Gaps = 25/269 (9%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P +V YN +I+VFG+ L + E++ + ++PN +Y+ L
Sbjct: 62 KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + I+ M+ + D T +++ Y G +K++ ++
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAK---- 379
++ Y + + L RL+ K NV+ ++ +Y K
Sbjct: 181 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNXMMMIYGKTLEH 235
Query: 380 ---EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL 436
+ ++EM+ N E S+T I+S + + +D+ A ++ S+G +
Sbjct: 236 EKANNLIQEMQ---NRGIE-PNSIT----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDI 287
Query: 437 CRSLYHSKMVMYASQRRVEEMESVLKEME 465
+ LY + +V Y V + +L E++
Sbjct: 288 DQVLYQTMIVAYERAGLVAHAKRLLHELK 316
>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
Length = 687
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 64/129 (49%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ G + +L R +++ ++I P++V Y+ +I + + F E
Sbjct: 221 TYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTE 280
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ + P++FTYN +I G+ ++ W E++ Q M + PD TY L+ + G
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340
Query: 312 LPRMEKIYE 320
E++Y+
Sbjct: 341 FFEAEELYD 349
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYNAL+ A++ G + + L+ ++ I P+ +TY+++I F + +D E F
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRG-IIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ SPN+ T+N LI GY A E+ M ++ DT TY L+ G+ G+
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445
Query: 312 L 312
L
Sbjct: 446 L 446
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 3/151 (1%)
Query: 175 AADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +LF E K + + TYN+++ + +G + L +++ E ISP +VTYN LI
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML-ERKISPDVVTYNALI 332
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F + E + E+ + PN TY+ +I G+ E ++ +M
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 392
Query: 294 PDTNTYLLLLRGYAHSGNLPR-MEKIYELVK 323
P+ T+ L+ GY + + ME ++E+ +
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTE 423
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ TYN L+ + G + + L+ ++ I P +TY+++I + +D F
Sbjct: 511 VQTYNILISGLINEGKFLEAEELYEEMPHRG-IVPDTITYSSMIDGLCKQSRLDEATQMF 569
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + SPNV T+ LI GY A E++ M ++ + TY+ L+ G+
Sbjct: 570 DSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKV 629
Query: 310 GNLPRMEKIYE 320
GN+ I++
Sbjct: 630 GNINGALDIFQ 640
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 6/172 (3%)
Query: 160 TKGIKFAGRINNVDL--AADLFAEAANKHL--KTIGTYNALLGAYMYNGLSDKCQSLFRD 215
T I +G IN A +L+ E ++ + TI TY++++ D+ +F
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI-TYSSMIDGLCKQSRLDEATQMFDS 571
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ ++ SP++VT+ TLI+ + + VD F E+ + N TY LI G+
Sbjct: 572 MGSKS-FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVG 630
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+I+Q M + V PDT T +L G L R + E ++ +D
Sbjct: 631 NINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQMSMD 682
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLLLVDHMEAA 248
TYN L+ + G + L +++ + + P IVT +TL+ G+L M
Sbjct: 432 TYNTLIHGFYLVGDLNAALDLLQEMIS-SGLCPDIVTCDTLLDGLCDNGKLKDALEMFKV 490
Query: 249 FQEIKD--------SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
Q+ K + + P+V TYN LI+G + + + EE+Y+ M ++PDT TY
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYS 550
Query: 301 LLLRGYAHSGNLPRMEKIYE 320
++ G L ++++
Sbjct: 551 SMIDGLCKQSRLDEATQMFD 570
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY++++ + D + +F L SP+++T+NTLI + +D E
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFY-LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE 420
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ ++ L + TYN LI G+ ++ Q M + + PD T LL G +G
Sbjct: 421 MTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK 480
Query: 312 LPRMEKIYELVK 323
L +++++++
Sbjct: 481 LKDALEMFKVMQ 492
>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 8/154 (5%)
Query: 175 AADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A D+++E K + + TY L+ + G + SL ++K + NI+P + T++ LI
Sbjct: 217 ACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLK-NINPDVYTFSVLI 275
Query: 234 SVFGR---LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
G+ +VD + F+E+K N+ P++ TYN LI G + + + MK
Sbjct: 276 DALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEH 335
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
+ PD +Y +LL G G R+E E +H
Sbjct: 336 GIQPDVYSYTILLDGLCKGG---RLEIAKEFFQH 366
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 2/153 (1%)
Query: 167 GRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G+ VD A LF E +K++ I TYN+L+ N ++ +L +++K E I P
Sbjct: 282 GKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMK-EHGIQPD 340
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+ +Y L+ + ++ + FQ + NV+ YN +I G A ++G+ ++
Sbjct: 341 VYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKS 400
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
M+ MP+ T+ ++ + + EKI
Sbjct: 401 KMEGKGCMPNAITFRTIICALSEKDENDKAEKI 433
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 193 YNALLGAYMYNGL-SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF-- 249
YN ++ + N L D C + K ISP +VTY TLI F ++ M+ AF
Sbjct: 201 YNTIINSLCKNKLLGDACDVYSEMIVK--GISPDVVTYTTLIHGF---CIMGKMKEAFSL 255
Query: 250 -QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRG 305
E+K N++P+V+T++ LI V+E +++ MK ++PD TY L+ G
Sbjct: 256 LNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDG 315
Query: 306 YAHSGNLPRMEKIYELVKHH 325
+ +L R + + +K H
Sbjct: 316 LCKNHHLERAIALLKEMKEH 335
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 12/195 (6%)
Query: 136 LALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA 195
LA V ++ + +T KG+ F G I D A L + +Y
Sbjct: 111 LAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVV-AQGFQLDQV-SYGT 168
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ G + L R L+ + + P +V YNT+I+ + L+ + E+
Sbjct: 169 LINGLCKAGETKAVARLLRKLEGHS-VKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVK 227
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM---MKAGPVMPDTNTYLLLLRGYAHSGNL 312
+SP+V TY LI G+ + GK++E + + MK + PD T+ +L+ G
Sbjct: 228 GISPDVVTYTTLIHGF---CIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKK 284
Query: 313 PRMEK---IYELVKH 324
+++ ++E +KH
Sbjct: 285 KMVDEAMSLFEEMKH 299
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 94/215 (43%), Gaps = 22/215 (10%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C + + Y +E MK G +P T Y I +I
Sbjct: 626 GFCKSGKVNKAYQLLEEMKTKGRQP--------------------TVVTYGSVIDGLAKI 665
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ +D A LF EA + L+ + Y++L+ + G D+ + +L ++ ++P++ T
Sbjct: 666 DRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKG-LTPNVYT 724
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
+N L+ + ++ FQ +K+ +PN TY+ LI G + K +Q M+
Sbjct: 725 WNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQ 784
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+ P+T TY ++ G A +GN+ ++E K
Sbjct: 785 KQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFK 819
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 5/182 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I + D+ LF + + ++ + ++ + G D SL ++K
Sbjct: 201 YTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMK 260
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ IV YN I FG+ VD F EIK L P+ TY +I
Sbjct: 261 SNC-LHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRL 319
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
+ EI++ M+ +P Y ++ GY +G + ++ Y L++ P + A
Sbjct: 320 DEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAG---KFDEAYSLLERQKARGCIPSVIAY 376
Query: 338 IC 339
C
Sbjct: 377 NC 378
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 14/186 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y +L+ ++ G + +F+++ SP + N + + A F+E
Sbjct: 514 VYTSLIKSFFKCGRKEDGHKIFKEMIHRG-CSPDLRLLNAYMDCVFKAGETGKGRALFEE 572
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
IK P+V +Y+ LI G + A + E++ MK + DT+ Y + G+ SG
Sbjct: 573 IKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSG- 631
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI----EALMRLIPEKEYRP 367
++ K Y+L++ P + + SV D + KI EA M K
Sbjct: 632 --KVNKAYQLLEEMKTKGRQPTV------VTYGSVIDGLAKIDRLDEAYMLFEEAKSNGL 683
Query: 368 WLNVLL 373
LNV++
Sbjct: 684 ELNVVI 689
>gi|212275364|ref|NP_001130677.1| uncharacterized protein LOC100191780 [Zea mays]
gi|194707568|gb|ACF87868.1| unknown [Zea mays]
gi|195624402|gb|ACG34031.1| membrane-associated salt-inducible protein like [Zea mays]
gi|195653371|gb|ACG46153.1| membrane-associated salt-inducible protein like [Zea mays]
gi|413937895|gb|AFW72446.1| putative membrane-associated salt-inducible protein [Zea mays]
Length = 471
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 14/173 (8%)
Query: 178 LFAEAANKHLKT--IGTYNALLGAY-MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234
LFAE + + T +Y L+ AY M + Q+L DL +E ISP+ Y TLI
Sbjct: 167 LFAELSKEFSITPNATSYGILVKAYCMARDDAKAKQAL--DLMREQGISPTNRIYTTLID 224
Query: 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM---KAGP 291
+ + + E+ ++E+ +S P+V TYN Y + GK EE+ ++M +A
Sbjct: 225 SMYKRKMTNEAESLWKEMVESECEPDVATYNVKAMYYA---LHGKPEEVMEVMTEMEAAG 281
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH---HVDGKEFPLIRAMICAY 341
V PDT TY L+ Y SG L + +Y + D + + A +CAY
Sbjct: 282 VKPDTTTYNFLMTSYCKSGKLEDAKVLYHSLAEKGCSADAATYKHMLAELCAY 334
>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 568
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 1/127 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN ++ + +G + LF +++ E +S +IVTYNTLI R + + +
Sbjct: 270 TYNCVMNQHCKDGRTKDAFKLFDEMR-ERGVSCNIVTYNTLIGGLCREMKANEANKVMDQ 328
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K ++PN+ TYN LI G+ GK + + +K+ + P TY +L+ G+ G+
Sbjct: 329 MKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGD 388
Query: 312 LPRMEKI 318
K+
Sbjct: 389 TSGAGKV 395
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 11/144 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ- 250
TYN L+ + G + + ++++ E I PS +TY LI F R+ D+ME A Q
Sbjct: 375 TYNILVSGFCKKGDTSGAGKVVKEME-ERGIKPSKITYTILIDTFARM---DNMEKAIQL 430
Query: 251 --EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+++ L+P+V TY+ LI G+ + ++++M A + P+ Y ++ GY
Sbjct: 431 RSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCK 490
Query: 309 SGNLPRMEKIYELVKHHVDGKEFP 332
G+ R +++ ++ KE P
Sbjct: 491 EGSSYRALRLF----REMEEKELP 510
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 5/148 (3%)
Query: 175 AADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A LF E + + I TYN L+G +++ + +K + I+P+++TYNTLI
Sbjct: 287 AFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDG-INPNLITYNTLI 345
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
F + + + +++K LSP++ TYN L++G+ ++ + M+ +
Sbjct: 346 DGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIK 405
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYEL 321
P TY +L+ +A N MEK +L
Sbjct: 406 PSKITYTILIDTFARMDN---MEKAIQL 430
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+E SP++V Y TLI + ++ + F E+ L N +TY LI G +
Sbjct: 190 REFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIK 249
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ E+Y+ M+ V P+ TY ++ + G K+++
Sbjct: 250 KQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFD 292
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 112/257 (43%), Gaps = 17/257 (6%)
Query: 172 VDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
+D A DLF + + T+ TY L+ + + + +L ++++ E I P+I TY
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEME-ETGIKPNIHTYT 362
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
LI + ++ + L PNV TYN LI GY M ++ ++M++
Sbjct: 363 VLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESR 422
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVT 347
+ P+T TY L++GY S + K ++ ++ K P + ++I +
Sbjct: 423 KLSPNTRTYNELIKGYCKS----NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNF 478
Query: 348 DRIKKIEALMR---LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR 404
D ++ +LM L+P++ W +I K +EE + D+ E K V
Sbjct: 479 DSAYRLLSLMNDRGLVPDQ----WTYTSMIDSLCKSKRVEE-ACDLFDSLEQKGVNPNVV 533
Query: 405 IMRCIVSSYFRCNAVDK 421
+ ++ Y + VD+
Sbjct: 534 MYTALIDGYCKAGKVDE 550
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 8/117 (6%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
D C+ + +D + E I YNTL++ R LVD M+ + E+ + + PN++TYN
Sbjct: 164 DLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNK 223
Query: 267 LIAGYMTAWMWGKVEE----IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
++ GY G VEE + ++++AG + PD TY L+ GY +L K++
Sbjct: 224 MVNGYCK---LGNVEEANQYVSKIVEAG-LDPDFFTYTSLIMGYCQRKDLDSAFKVF 276
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 7/131 (5%)
Query: 185 KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDH 244
K L + TYN+L+ +G D L L + + P TY ++I + V+
Sbjct: 457 KVLPDVVTYNSLIDGQCRSGNFDSAYRLL-SLMNDRGLVPDQWTYTSMIDSLCKSKRVEE 515
Query: 245 MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM---MKAGPVMPDTNTYLL 301
F ++ ++PNV Y LI GY A GKV+E + M M + +P++ T+
Sbjct: 516 ACDLFDSLEQKGVNPNVVMYTALIDGYCKA---GKVDEAHLMLEKMLSKNCLPNSLTFNA 572
Query: 302 LLRGYAHSGNL 312
L+ G G L
Sbjct: 573 LIHGLCADGKL 583
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 2/153 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I + VD A + + +K+ L T+NAL+ +G K +L +
Sbjct: 535 YTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADG-KLKEATLLEEKM 593
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + P++ T LI + DH + FQ++ S P+ TY I Y
Sbjct: 594 VKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRL 653
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E++ M+ V PD TY L++GY G
Sbjct: 654 LDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLG 686
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLLLVDHM 245
T+ T L+ + +G D S F+ + + P TY T I + GRLL + M
Sbjct: 601 TVSTDTILIHRLLKDGDFDHAYSRFQQML-SSGTKPDAHTYTTFIQTYCREGRLLDAEDM 659
Query: 246 EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304
A +E + +SP++FTY+ LI GY ++ + M+ P +T+L L++
Sbjct: 660 MAKMRE---NGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIK 715
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 21/148 (14%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY + Y G + + ++ E +SP + TY++LI +G L + +
Sbjct: 639 TYTTFIQTYCREGRLLDAEDMMAKMR-ENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKR 697
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGK-------------------VEEIYQMMKAGPV 292
++D+ P+ T+ LI ++ +GK V E+ + M V
Sbjct: 698 MRDTGCEPSQHTFLSLIK-HLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSV 756
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
P+ +Y L+ G GNL EK+++
Sbjct: 757 TPNAKSYEKLILGICEVGNLRVAEKVFD 784
>gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 451
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 22/212 (10%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G CL +R ++ M G P L T +G AG+I
Sbjct: 202 GWCLIKRTPKALEVLKEMVDRGINPNLT-----------------TYNTMLQGFFRAGQI 244
Query: 170 NNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
A + F E ++ + + TY ++ + G + +++F ++ +E + PS+ T
Sbjct: 245 RQ---AWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRTRNVFDEMIREG-VLPSVAT 300
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN I V + V++ F+E+ PNV TYN LI G A + + EE+ Q M+
Sbjct: 301 YNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNVLIRGLFHAGKFSRGEELMQRME 360
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
P+ TY +++R Y+ + + ++E
Sbjct: 361 NEGCEPNFQTYNMMIRYYSECSEVEKALGLFE 392
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 8/206 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN +L + G + F ++KK N +VTY T++ FG + F E
Sbjct: 230 TYNTMLQGFFRAGQIRQAWEFFLEMKKR-NCEIDVVTYTTVVHGFGVAGEIKRTRNVFDE 288
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + P+V TYN I +++ M P+ TY +L+RG H+G
Sbjct: 289 MIREGVLPSVATYNAFIQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNVLIRGLFHAGK 348
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL-- 369
R E++ + +++ F MI YS+CS ++K L + + P L
Sbjct: 349 FSRGEELMQRMENEGCEPNFQTYNMMIRYYSECS---EVEKALGLFEKMGTGDCLPNLDT 405
Query: 370 -NVLLIRVYAKEDCLEEMEKSINDAF 394
N+L+ ++ ++ E+M + N AF
Sbjct: 406 YNILISGMFVRKRS-EDMVVAGNQAF 430
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 63/319 (19%), Positives = 124/319 (38%), Gaps = 56/319 (17%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+ + Y +G DK LF ++ E + ++NT++ V + V+ F+
Sbjct: 126 TFAIVAERYASSGKPDKAVKLFLNMH-EHGCFQDLASFNTILDVLCKSKRVEKAYELFRA 184
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ S + TYN ++ G+ K E+ + M + P+ TY +L+G+ +G
Sbjct: 185 LR-GRFSADTVTYNVIVNGWCLIKRTPKALEVLKEMVDRGINPNLTTYNTMLQGFFRAGQ 243
Query: 312 LPRM-EKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+ + E E+ K + E ++ + V IK+ + + + P +
Sbjct: 244 IRQAWEFFLEMKKRNC---EIDVVTYTTVVHG-FGVAGEIKRTRNVFDEMIREGVLPSVA 299
Query: 371 VL--LIRVYAKEDCLEE----MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424
I+V K+D +E E+ + +E +VTT +
Sbjct: 300 TYNAFIQVLCKKDSVENAVVMFEEMVRKGYE--PNVTTYNV------------------- 338
Query: 425 FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484
L R L+H+ + E +++ MEN + + +T+ +M Y+
Sbjct: 339 -----------LIRGLFHAG--------KFSRGEELMQRMENEGCEPNFQTYNMMIRYYS 379
Query: 485 TCGQRRKVNQVLGLMCKNG 503
C + V + LGL K G
Sbjct: 380 ECSE---VEKALGLFEKMG 395
>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
Length = 661
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 9/212 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I G+ N + A D F + ++ + T+N L+ A+ G D+ LF D
Sbjct: 400 YNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELF-DEM 458
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+E+N TYN +I++ G + +EA E+K+ L PN+ TY L+ Y + +
Sbjct: 459 RESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRF 518
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP--LIR 335
+ + + MKA + P Y L+ YA G + + ++ DG E ++
Sbjct: 519 KEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMR--ADGLEASTVVLN 576
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
++I A+ + RI + ++++ + E RP
Sbjct: 577 SLINAFGE---DRRIAEAFSVLQFMKENGLRP 605
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/319 (19%), Positives = 131/319 (41%), Gaps = 17/319 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YNALL Y+ G + + D + ++P TY+ L+ + R + +E
Sbjct: 294 AYNALLKGYVKIGSLKNAEQVL-DEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKE 352
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + P+ + ++ ++AG+ W K + + M A V PD + Y +++ +
Sbjct: 353 MEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNC 412
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR----LIPEKEYRP 367
L ++ ++ + +I A+ K DR ++ MR + Y
Sbjct: 413 LGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNI 472
Query: 368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
+N+L +E E +E + + E V + +V Y R + + ++
Sbjct: 473 MINLL-----GEEQRWEGVEAMLAEMKEQGL-VPNIITYTTLVDVYGRSGRFKEAVDCIE 526
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
++ G + ++YH+ + YA + + +V+K M ++ S + A+ G
Sbjct: 527 AMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAF---G 583
Query: 488 QRRKVNQ---VLGLMCKNG 503
+ R++ + VL M +NG
Sbjct: 584 EDRRIAEAFSVLQFMKENG 602
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 2/145 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLK 217
YT + GR A D LK T Y+AL+ AY GL+D ++ + ++
Sbjct: 505 YTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMR 564
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + S V N+LI+ FG + + Q +K++ L P+V TY L+ + +
Sbjct: 565 AD-GLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQF 623
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLL 302
KV IY+ M PD +L
Sbjct: 624 EKVPVIYEEMITSGCAPDRKARAML 648
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 54/311 (17%), Positives = 116/311 (37%), Gaps = 44/311 (14%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+ ++LF + I P YN L+ + ++ + + E E+ ++P+ TY+ L
Sbjct: 274 EAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLL 333
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y A W + + M+A V P + + +L G+ G
Sbjct: 334 VDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEW--------------- 378
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME 387
K F ++R M + + P++ + NV +I + K +CL
Sbjct: 379 QKAFAVLREMHASGVR-----------------PDRHF---YNV-MIDTFGKYNCLGHAM 417
Query: 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVM 447
+ + E V ++ ++ + D+ + L + Y+ + +
Sbjct: 418 DAFDRMREEGIEPDVV-TWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINL 476
Query: 448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG---- 503
++R E +E++L EM+ + + T+ + Y G+ ++ + M +G
Sbjct: 477 LGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPS 536
Query: 504 ---YDVPVNAF 511
Y VNA+
Sbjct: 537 PTMYHALVNAY 547
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 71/191 (37%), Gaps = 5/191 (2%)
Query: 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KT 189
G R A+E+ + R P+ Y I G + + AE + L
Sbjct: 445 GGRHDRAIELFDEMRES---NCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPN 501
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TY L+ Y +G + +K + + PS Y+ L++ + + L DH
Sbjct: 502 IITYTTLVDVYGRSGRFKEAVDCIEAMKAD-GLKPSPTMYHALVNAYAQRGLADHALNVV 560
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ ++ L + N LI + + + Q MK + PD TY L++
Sbjct: 561 KAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRV 620
Query: 310 GNLPRMEKIYE 320
++ IYE
Sbjct: 621 EQFEKVPVIYE 631
>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Brachypodium distachyon]
Length = 496
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 11/165 (6%)
Query: 168 RINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKK----EANI 222
R+ + A DL + A + T TYN +L + G + F +KK + N
Sbjct: 216 RVKDTSRALDLLRQMAESGIAPTKTTYNVILKGFFRAGQLQHAWNFFLQMKKRGSKDENC 275
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
P +V+Y T+I G +D F E+ P + TYN LI G VE+
Sbjct: 276 KPDVVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCPPTIATYNALI---QVICKKGNVED 332
Query: 283 ---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
++ M +P+ TY +L+RG H G + R K+ E +K+
Sbjct: 333 AVTVFDDMIRKDYIPNVVTYTVLIRGLCHVGKIDRAMKLMERMKN 377
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 80/196 (40%), Gaps = 10/196 (5%)
Query: 141 LNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT------IGTYN 194
L+ R+ A G TK Y +K R + A + F + + K + +Y
Sbjct: 224 LDLLRQMAESGIAPTKTTYNVILKGFFRAGQLQHAWNFFLQMKKRGSKDENCKPDVVSYT 283
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
++ G DK + LF ++ KE P+I TYN LI V + V+ F ++
Sbjct: 284 TIIHGLGVAGQLDKARKLFDEMSKEG-CPPTIATYNALIQVICKKGNVEDAVTVFDDMIR 342
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ PNV TY LI G + ++ + MK P TY +L+R G
Sbjct: 343 KDYIPNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRYSFEEGE--- 399
Query: 315 MEKIYELVKHHVDGKE 330
M+K L + G+E
Sbjct: 400 MDKALHLFERMSKGEE 415
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 3/147 (2%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I G +D A LF E + + TI TYNAL+ G + ++F D+
Sbjct: 282 YTTIIHGLGVAGQLDKARKLFDEMSKEGCPPTIATYNALIQVICKKGNVEDAVTVFDDMI 341
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
++ I P++VTY LI + +D + +K+ P V TYN LI
Sbjct: 342 RKDYI-PNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRYSFEEGEM 400
Query: 278 GKVEEIYQMMKAG-PVMPDTNTYLLLL 303
K +++ M G +P+ +TY +++
Sbjct: 401 DKALHLFERMSKGEECLPNQDTYNIVI 427
>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
Length = 799
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++GA + D+ SL +++ + I P+IVTYN L++ F V+ + +
Sbjct: 532 TYTTIIGALCQSKELDRAHSLLQEML-DKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEW 590
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + N+ PN TYN L+ Y EIY+ M + V+P+ NTY +L++G+ + N
Sbjct: 591 MLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARN 650
Query: 312 L 312
+
Sbjct: 651 M 651
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 8/155 (5%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+V A +L E +K L+ I TYN+L+ G ++ D+ EA + P + T
Sbjct: 474 GDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMD-EAGLKPDVYT 532
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE---EIYQ 285
Y T+I + +D + QE+ D + P + TYN L+ G+ M G+VE + +
Sbjct: 533 YTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF---CMSGRVEGGKRLLE 589
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
M + P+T TY L++ Y N+ +IY+
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYK 624
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
+ ++ + G ++ F +++K ++ VTY LI+ R + E Q
Sbjct: 356 AVFTTVMSGFCRKGDLAAARNWFDEMQKRG-LAADGVTYTALINGLCRAGELKEAERVLQ 414
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E++D L + TY LI GY + ++ M V P+ TY L G G
Sbjct: 415 EMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQG 474
Query: 311 NL 312
++
Sbjct: 475 DV 476
>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 64/129 (49%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ G + +L R +++ ++I P++V Y+ +I + + F E
Sbjct: 221 TYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTE 280
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ + P++FTYN +I G+ ++ W E++ Q M + PD TY L+ + G
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340
Query: 312 LPRMEKIYE 320
E++Y+
Sbjct: 341 FFEAEELYD 349
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYNAL+ A++ G + + L+ ++ I P+ +TY+++I F + +D E F
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRG-IIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ SPN+ T+N LI GY A E+ M ++ DT TY L+ G+ G+
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445
Query: 312 L 312
L
Sbjct: 446 L 446
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 3/151 (1%)
Query: 175 AADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +LF E K + + TYN+++ + +G + L +++ E ISP +VTYN LI
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML-ERKISPDVVTYNALI 332
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F + E + E+ + PN TY+ +I G+ E ++ +M
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 392
Query: 294 PDTNTYLLLLRGYAHSGNLPR-MEKIYELVK 323
P+ T+ L+ GY + + ME ++E+ +
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTE 423
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ TYN L+ + G + + L+ ++ I P +TY+++I + +D F
Sbjct: 511 VQTYNILISGLINEGKFLEAEELYEEMPHRG-IVPDTITYSSMIDGLCKQSRLDEATQMF 569
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + SPNV T+ LI GY A E++ M ++ + TY+ L+ G+
Sbjct: 570 DSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKV 629
Query: 310 GNLPRMEKIYE 320
GN+ I++
Sbjct: 630 GNINGALDIFQ 640
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 6/172 (3%)
Query: 160 TKGIKFAGRINNVDL--AADLFAEAANKHL--KTIGTYNALLGAYMYNGLSDKCQSLFRD 215
T I +G IN A +L+ E ++ + TI TY++++ D+ +F
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI-TYSSMIDGLCKQSRLDEATQMFDS 571
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ ++ SP++VT+ TLI+ + + VD F E+ + N TY LI G+
Sbjct: 572 MGSKS-FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVG 630
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+I+Q M + V PDT T +L G L R + E ++ +D
Sbjct: 631 NINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQMSMD 682
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLLLVDHMEAA 248
TYN L+ + G + L +++ + + P IVT +TL+ G+L M
Sbjct: 432 TYNTLIHGFYLVGDLNAALDLLQEMIS-SGLCPDIVTCDTLLDGLCDNGKLKDALEMFKV 490
Query: 249 FQEIKD--------SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
Q+ K + + P+V TYN LI+G + + + EE+Y+ M ++PDT TY
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYS 550
Query: 301 LLLRGYAHSGNLPRMEKIYE 320
++ G L ++++
Sbjct: 551 SMIDGLCKQSRLDEATQMFD 570
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY++++ + D + +F L SP+++T+NTLI + +D E
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFY-LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE 420
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ ++ L + TYN LI G+ ++ Q M + + PD T LL G +G
Sbjct: 421 MTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK 480
Query: 312 LPRMEKIYELVK 323
L +++++++
Sbjct: 481 LKDALEMFKVMQ 492
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 85/201 (42%), Gaps = 10/201 (4%)
Query: 168 RINNVDLAADLFAEAA-NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
I ++ A DLF++ ++ L ++ + L+G + D SL++ ++++ I I
Sbjct: 56 EIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK-QIRCDI 114
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
++ LI F + + F +I L P+V T+N L+ G + ++
Sbjct: 115 YSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQ 174
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE------FPLIRAMICA 340
M P+ T+ L+ G G + +E + L + DG + ++ M
Sbjct: 175 MFETTCRPNVVTFTTLMNGLCREGRI--VEAVALLDRMMEDGLQPTQITYGTIVDGMCKK 232
Query: 341 YSKCSVTDRIKKIEALMRLIP 361
S + ++K+E + +IP
Sbjct: 233 GDTVSALNLLRKMEEVSHIIP 253
>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 64/129 (49%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ G + +L R +++ ++I P++V Y+ +I + + F E
Sbjct: 221 TYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTE 280
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ + P++FTYN +I G+ ++ W E++ Q M + PD TY L+ + G
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340
Query: 312 LPRMEKIYE 320
E++Y+
Sbjct: 341 FFEAEELYD 349
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYNAL+ A++ G + + L+ ++ I P+ +TY+++I F + +D E F
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRG-IIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ SPN+ T+N LI GY A E+ M ++ DT TY L+ G+ G+
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445
Query: 312 L 312
L
Sbjct: 446 L 446
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 3/151 (1%)
Query: 175 AADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +LF E K + + TYN+++ + +G + L +++ E ISP +VTYN LI
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML-ERKISPDVVTYNALI 332
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F + E + E+ + PN TY+ +I G+ E ++ +M
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 392
Query: 294 PDTNTYLLLLRGYAHSGNLPR-MEKIYELVK 323
P+ T+ L+ GY + + ME ++E+ +
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTE 423
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ TYN L+ + G + + L+ ++ I P +TY+++I + +D F
Sbjct: 511 VQTYNILISGLINEGKFLEAEELYEEMPHRG-IVPDTITYSSMIDGLCKQSRLDEATQMF 569
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + SPNV T+ LI GY A E++ M ++ + TY+ L+ G+
Sbjct: 570 DSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKV 629
Query: 310 GNLPRMEKIYE 320
GN+ I++
Sbjct: 630 GNINGALDIFQ 640
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 6/172 (3%)
Query: 160 TKGIKFAGRINNVDL--AADLFAEAANKHL--KTIGTYNALLGAYMYNGLSDKCQSLFRD 215
T I +G IN A +L+ E ++ + TI TY++++ D+ +F
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI-TYSSMIDGLCKQSRLDEATQMFDS 571
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ ++ SP++VT+ TLI+ + + VD F E+ + N TY LI G+
Sbjct: 572 MGSKS-FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVG 630
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+I+Q M + V PDT T +L G L R + E ++ +D
Sbjct: 631 NINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQMSMD 682
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLLLVDHMEAA 248
TYN L+ + G + L +++ + + P IVT +TL+ G+L M
Sbjct: 432 TYNTLIHGFYLVGDLNAALDLLQEMIS-SGLCPDIVTCDTLLDGLCDNGKLKDALEMFKV 490
Query: 249 FQEIKD--------SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
Q+ K + + P+V TYN LI+G + + + EE+Y+ M ++PDT TY
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYS 550
Query: 301 LLLRGYAHSGNLPRMEKIYE 320
++ G L ++++
Sbjct: 551 SMIDGLCKQSRLDEATQMFD 570
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY++++ + D + +F L SP+++T+NTLI + +D E
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFY-LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE 420
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ ++ L + TYN LI G+ ++ Q M + + PD T LL G +G
Sbjct: 421 MTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK 480
Query: 312 LPRMEKIYELVK 323
L +++++++
Sbjct: 481 LKDALEMFKVMQ 492
>gi|255661190|gb|ACU25764.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 426
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M++ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ ++ G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRL 311
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 107/232 (46%), Gaps = 33/232 (14%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 197 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG-IEPN 253
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++ ++ +D FQ+++ S + + Y +I Y A + + +
Sbjct: 254 SITYSTIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLH 313
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P DT ++L A SG R+E+ + + +D K+ + MI +
Sbjct: 314 ELKRPDNIPRDTAIHIL-----AGSG---RIEEATWVFRQAIDAGEVKDITVFERMIHLF 365
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSIN 391
SK + ++ MR + Y P NV L++ Y K L E +K+ N
Sbjct: 366 SKYKKYSNVVEVFDKMRGLG---YFPDSNVTALVLNAYGK---LHEFDKANN 411
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/308 (19%), Positives = 123/308 (39%), Gaps = 36/308 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D + + ++++ + +V Y+ LI + +L + F
Sbjct: 11 TYSTLITHFGKEGLFDAALAWLQKMEQD-RVPGDLVLYSNLIELSRKLCDYSKAISIFSR 69
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S SP++ YN +I + A ++ + + M+ VMP+T +Y LL Y +
Sbjct: 70 LKRSGFSPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTVSYSTLLTMYVENKK 129
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 130 FLEALTVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 189
Query: 372 LLIRVYAKEDCLEE------------MEKSI----------NDAFEHKTSVTTVRIMRC- 408
LL RVY + E +E+++ EH+ + ++ M+
Sbjct: 190 LL-RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSR 248
Query: 409 -----------IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
I+S + + +D+ A ++ S+G + + LY + +V Y V
Sbjct: 249 GIEPNSITYSTIISIWSKIGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHA 308
Query: 458 ESVLKEME 465
+ +L E++
Sbjct: 309 KRLLHELK 316
>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
Length = 799
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++GA + D+ SL +++ + I P+IVTYN L++ F V+ + +
Sbjct: 532 TYTTIIGALCQSKELDRAHSLLQEML-DKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEW 590
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + N+ PN TYN L+ Y EIY+ M + V+P+ NTY +L++G+ + N
Sbjct: 591 MLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARN 650
Query: 312 L 312
+
Sbjct: 651 M 651
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 8/155 (5%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+V A +L E +K L+ I TYN+L+ G ++ D+ EA + P + T
Sbjct: 474 GDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMD-EAGLKPDVYT 532
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE---EIYQ 285
Y T+I + +D + QE+ D + P + TYN L+ G+ M G+VE + +
Sbjct: 533 YTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF---CMSGRVEGGKRLLE 589
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
M + P+T TY L++ Y N+ +IY+
Sbjct: 590 WMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYK 624
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Query: 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
+ ++ + G ++ F +++K ++ VTY LI+ R + E Q
Sbjct: 356 AVFTTVMSGFCRKGDLAAARNWFDEMQKRG-LAADGVTYTALINGLCRAGELKEAERVLQ 414
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E++D L + TY LI GY + ++ M V P+ TY L G G
Sbjct: 415 EMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQG 474
Query: 311 NL 312
++
Sbjct: 475 DV 476
>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 64/129 (49%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ G + +L R +++ ++I P++V Y+ +I + + F E
Sbjct: 221 TYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTE 280
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ + P++FTYN +I G+ ++ W E++ Q M + PD TY L+ + G
Sbjct: 281 MQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGK 340
Query: 312 LPRMEKIYE 320
E++Y+
Sbjct: 341 FFEAEELYD 349
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYNAL+ A++ G + + L+ ++ I P+ +TY+++I F + +D E F
Sbjct: 327 TYNALINAFVKEGKFFEAEELYDEMLPRG-IIPNTITYSSMIDGFCKQNRLDAAEHMFYL 385
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ SPN+ T+N LI GY A E+ M ++ DT TY L+ G+ G+
Sbjct: 386 MATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445
Query: 312 L 312
L
Sbjct: 446 L 446
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 3/151 (1%)
Query: 175 AADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +LF E K + + TYN+++ + +G + L +++ E ISP +VTYN LI
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEML-ERKISPDVVTYNALI 332
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ F + E + E+ + PN TY+ +I G+ E ++ +M
Sbjct: 333 NAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCS 392
Query: 294 PDTNTYLLLLRGYAHSGNLPR-MEKIYELVK 323
P+ T+ L+ GY + + ME ++E+ +
Sbjct: 393 PNLITFNTLIDGYCGAKRIDDGMELLHEMTE 423
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ TYN L+ + G + + L+ ++ I P +TY+++I + +D F
Sbjct: 511 VQTYNILISGLINEGKFLEAEELYEEMPHRG-IVPDTITYSSMIDGLCKQSRLDEATQMF 569
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + SPNV T+ LI GY A E++ M ++ + TY+ L+ G+
Sbjct: 570 DSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKV 629
Query: 310 GNLPRMEKIYE 320
GN+ I++
Sbjct: 630 GNINGALDIFQ 640
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 6/172 (3%)
Query: 160 TKGIKFAGRINNVDL--AADLFAEAANKHL--KTIGTYNALLGAYMYNGLSDKCQSLFRD 215
T I +G IN A +L+ E ++ + TI TY++++ D+ +F
Sbjct: 513 TYNILISGLINEGKFLEAEELYEEMPHRGIVPDTI-TYSSMIDGLCKQSRLDEATQMFDS 571
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ ++ SP++VT+ TLI+ + + VD F E+ + N TY LI G+
Sbjct: 572 MGSKS-FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVG 630
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+I+Q M + V PDT T +L G L R + E ++ +D
Sbjct: 631 NINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQMSMD 682
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---GRLLLVDHMEAA 248
TYN L+ + G + L +++ + + P IVT +TL+ G+L M
Sbjct: 432 TYNTLIHGFYLVGDLNAALDLLQEMIS-SGLCPDIVTCDTLLDGLCDNGKLKDALEMFKV 490
Query: 249 FQEIKD--------SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
Q+ K + + P+V TYN LI+G + + + EE+Y+ M ++PDT TY
Sbjct: 491 MQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYS 550
Query: 301 LLLRGYAHSGNLPRMEKIYE 320
++ G L ++++
Sbjct: 551 SMIDGLCKQSRLDEATQMFD 570
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY++++ + D + +F L SP+++T+NTLI + +D E
Sbjct: 362 TYSSMIDGFCKQNRLDAAEHMFY-LMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHE 420
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ ++ L + TYN LI G+ ++ Q M + + PD T LL G +G
Sbjct: 421 MTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK 480
Query: 312 LPRMEKIYELVK 323
L +++++++
Sbjct: 481 LKDALEMFKVMQ 492
Score = 38.5 bits (88), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 85/201 (42%), Gaps = 10/201 (4%)
Query: 168 RINNVDLAADLFAEAA-NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
I ++ A DLF++ ++ L ++ + L+G + D SL++ ++++ I I
Sbjct: 56 EIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK-QIRCDI 114
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
++ LI F + + F ++ L P+V T+N L+ G + ++
Sbjct: 115 YSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQ 174
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE------FPLIRAMICA 340
M P+ T+ L+ G G + +E + L + DG + ++ M
Sbjct: 175 MFETTCRPNVVTFTTLMNGLCREGRI--VEAVALLDRMMEDGLQPTQITYGTIVDGMCKK 232
Query: 341 YSKCSVTDRIKKIEALMRLIP 361
S + ++K+E + +IP
Sbjct: 233 GDTVSALNLLRKMEEVSHIIP 253
>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
Length = 599
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/367 (22%), Positives = 155/367 (42%), Gaps = 33/367 (8%)
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQ 210
TP T YT I N+ D A +LFA+ + + TYN ++ A G+ ++
Sbjct: 42 TPSTVA-YTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEAC 100
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
L + + ++ ++ P +VTYNT++ + V+ F E++ +PN ++N +I G
Sbjct: 101 DLIKKMIEDGHV-PDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILG 159
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+ +++ M+A + PD+ +Y +L+ G A +G ++ + Y+L + +D
Sbjct: 160 LCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAG---KLNEAYKLFQRMLDSGI 216
Query: 331 FP-------LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKED 381
P +I M AY+ + + L + + K RP + +LI + K
Sbjct: 217 TPSAVTYNVVIHGMCLAYT-------LDEALELFKSMRSKGCRPSRFTFNILIDAHCKRG 269
Query: 382 CLEE----MEKSINDAFEHKTSVTTVRIMRCIVSSYFRC-NAVDKLANFVKRAESAGWRL 436
L+E +++ +D H V T + + S R +A L + VKR
Sbjct: 270 KLDEAFRLLKRMTDDG--HVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVT 327
Query: 437 CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
+L H R++E VL M + T+ + + + GQ + ++L
Sbjct: 328 QNTLIHG----LCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELL 383
Query: 497 GLMCKNG 503
M G
Sbjct: 384 SDMVARG 390
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 3/167 (1%)
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS 211
T +T+ G+ AGRI D A ++ + TYN L+ + G +++ +
Sbjct: 324 TVVTQNTLIHGLCKAGRIKEAREVLD--AMVSSGQSPDVVTYNTLVHGHCRAGQTERARE 381
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
L D+ ++P++VTY L+S + + F ++K S +PN+FTY LI G+
Sbjct: 382 LLSDMVARG-LAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGF 440
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
+A +++ M + PD Y L SG R +I
Sbjct: 441 CSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEI 487
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 1/140 (0%)
Query: 184 NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
+ H+ + TY+ L+ D + L D+ K P++VT NTLI + +
Sbjct: 284 DGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKR-QCKPTVVTQNTLIHGLCKAGRIK 342
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
+ S SP+V TYN L+ G+ A + E+ M A + P+ TY L+
Sbjct: 343 EAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALV 402
Query: 304 RGYAHSGNLPRMEKIYELVK 323
G + LP ++ +K
Sbjct: 403 SGLCKANRLPEACGVFAQMK 422
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 2/152 (1%)
Query: 169 INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
I VD A L + + K T+ T N L+ G + + + D + SP +V
Sbjct: 303 IARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVL-DAMVSSGQSPDVV 361
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TYNTL+ R + ++ L+PNV TY L++G A + ++ M
Sbjct: 362 TYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQM 421
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
K+ P+ TY L+ G+ +G + K++
Sbjct: 422 KSSGCAPNLFTYTALILGFCSAGQVDGGLKLF 453
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E N+SP +Y LI + ++ FQ++ S ++P+ Y LI G A +
Sbjct: 3 ERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFD 62
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
E++ M P TY +++ G L E+ +L+K ++ P
Sbjct: 63 DARELFADMNRRGCPPSPVTYNVMIDASCKRGML---EEACDLIKKMIEDGHVP 113
>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 696
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/378 (21%), Positives = 159/378 (42%), Gaps = 23/378 (6%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVD--LAADLFAEAANKHLKTIGTY- 193
AL +++ RR GY Y+ I++ R N +D + L+ E ++ G
Sbjct: 204 ALNLMSKMRRD-GYQPDFVN--YSSIIQYLTRSNKIDSPILQKLYTEIETDKIEIDGHLM 260
Query: 194 -NALLGAYMYNGLSDKCQSL-FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+ +LG ++ D +++ F + + ++P T +I G EA F+E
Sbjct: 261 NDIILG---FSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEE 317
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
I+++ P YN L+ GY+ E + M+ V PD TY LL+ YAH+G
Sbjct: 318 IRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGR 377
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
+ E+ +V+ + R ++ +Y + ++ M+ + R + N
Sbjct: 378 WESARIVLKEMEASNVEPNSYVYSR-ILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYN 436
Query: 371 VLLIRVYAKEDCLEE----MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
V +I + K +CL+ E+ +++ T VT ++ C S R N ++L
Sbjct: 437 V-MIDTFGKYNCLDHAMATFERMLSEGIRPDT-VTWNTLINCHCKS-GRHNMAEEL---F 490
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
+ G+ C + Y+ + Q+R E++ L +M++ + + T+ + Y
Sbjct: 491 GEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKS 550
Query: 487 GQRRKVNQVLGLMCKNGY 504
G+ + L ++ G+
Sbjct: 551 GRFSDAIECLEVLKSTGF 568
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 3/130 (2%)
Query: 166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
+GR ++ ++ K T+ YNAL+ AY GLS+ + FR + E ++PS
Sbjct: 550 SGRFSDAIECLEVLKSTGFKPTSTM--YNALINAYAQRGLSELAVNAFRLMTTEG-LTPS 606
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
++ N+LI+ FG A Q +K++N+ P+V TY L+ + + KV +Y+
Sbjct: 607 LLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYE 666
Query: 286 MMKAGPVMPD 295
M PD
Sbjct: 667 EMVTSGCTPD 676
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 2/153 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I G+ N +D A F ++ ++ T+N L+ + +G + + LF +++
Sbjct: 435 YNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQ 494
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ SP I TYN +I+ G + + +++ L PN TY L+ Y + +
Sbjct: 495 QRG-YSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRF 553
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
E +++K+ P + Y L+ YA G
Sbjct: 554 SDAIECLEVLKSTGFKPTSTMYNALINAYAQRG 586
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/333 (20%), Positives = 133/333 (39%), Gaps = 23/333 (6%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
+ + + T TYNAL+GA NG +K +L ++++ P V Y+++I R +
Sbjct: 178 SQRQVLTPLTYNALIGACARNGDVEKALNLMSKMRRDG-YQPDFVNYSSIIQYLTRSNKI 236
Query: 243 DH--MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYL 300
D ++ + EI+ + + N +I G+ A + M ++ + P +T +
Sbjct: 237 DSPILQKLYTEIETDKIEIDGHLMNDIILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLV 296
Query: 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI 360
++ +SG E ++E ++ +G E P RA T +K E ++ +
Sbjct: 297 AVILALGNSGRTHEAEALFEEIRE--NGSE-PRTRAYNALLKGYVKTGSLKDAEFVVSEM 353
Query: 361 PEKEYRPWLNV--LLIRVYAKED-------CLEEMEKSINDAFEHKTSVTTVRIMRCIVS 411
+ +P LLI YA L+EME S + + + I++
Sbjct: 354 EKAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSY--------VYSRILA 405
Query: 412 SYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC 471
SY K +K +S G + R Y+ + + ++ + + M + I
Sbjct: 406 SYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRP 465
Query: 472 SKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
T+ + + G+ ++ G M + GY
Sbjct: 466 DTVTWNTLINCHCKSGRHNMAEELFGEMQQRGY 498
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
Query: 192 TYNALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TY L+ Y +G SD + L ++ K P+ YN LI+ + + L + AF+
Sbjct: 539 TYTTLVDVYGKSGRFSDAIECL--EVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFR 596
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ L+P++ N LI + + + Q MK + PD TY L++
Sbjct: 597 LMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVE 656
Query: 311 NLPRMEKIYE 320
++ +YE
Sbjct: 657 KFQKVPAVYE 666
>gi|413952228|gb|AFW84877.1| hypothetical protein ZEAMMB73_259977 [Zea mays]
Length = 453
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 106/244 (43%), Gaps = 67/244 (27%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYM----YNGLSDKCQSL------ 212
I+ GR + AA +F + KH K+ T+NALL AY+ ++ L+ Q +
Sbjct: 129 IRLCGRASMPSHAAAIFHDLPPKH-KSSMTFNALLAAYLDASDFDALATALQEIPATHPT 187
Query: 213 --------------------------FRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
L ++ I+P I+++N L++ F D +E
Sbjct: 188 IAPTIYSHNILISALCKKPDLSAAVDVITLMEKRGITPDIISFNILLNGFYSNDRFDDVE 247
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE----IYQMMKAGPVMPDTNTYLLL 302
++ +K+ N+ P+ +YN + G ++ G+VE+ I +M K GP PD+ +Y L
Sbjct: 248 KVWEMMKERNVEPDARSYNAKLRGLVS---QGRVEDAAALIERMQKEGP-KPDSVSYNEL 303
Query: 303 LRGYAHSGNLPRMEKIYE----------------LVKHHVDGKEFPLIRAMICAYS---- 342
+RGY + G L +K+Y+ LV H V+ E L A+ C +
Sbjct: 304 IRGYCNEGRLNEAKKVYDNMIKNGYAPNRGTFHTLVPHFVEAGE--LDHALSCCHEIFTR 361
Query: 343 KCSV 346
KC V
Sbjct: 362 KCRV 365
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 87/184 (47%), Gaps = 14/184 (7%)
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN--LSPNVFTYNYLI 268
++F DL + S +T+N L++ + D + A QEI ++ ++P ++++N LI
Sbjct: 143 AIFHDLPPKHKSS---MTFNALLAAYLDASDFDALATALQEIPATHPTIAPTIYSHNILI 199
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH---H 325
+ ++ +M+ + PD ++ +LL G+ + +EK++E++K
Sbjct: 200 SALCKKPDLSAAVDVITLMEKRGITPDIISFNILLNGFYSNDRFDDVEKVWEMMKERNVE 259
Query: 326 VDGKEFPL-IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLE 384
D + + +R ++ S+ V D IE + + P+ + + LIR Y E L
Sbjct: 260 PDARSYNAKLRGLV---SQGRVEDAAALIERMQKEGPKPDSVSYNE--LIRGYCNEGRLN 314
Query: 385 EMEK 388
E +K
Sbjct: 315 EAKK 318
>gi|410110099|gb|AFV61129.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
trifolia]
Length = 440
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 139 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 197
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M++ +
Sbjct: 198 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIE 257
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 258 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKRL 317
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 111/244 (45%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 203 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG-IEPN 259
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + +I Y A + + +
Sbjct: 260 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKRLLH 319
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P DT ++L A +G R+E+ + + +D K+ + MI
Sbjct: 320 ELKRPDNIPRDTAIHIL-----AGAG---RIEEATYVFRQAIDAGEVKDITVFERMIHLL 371
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTS 399
SK + ++ MR + Y P +V+ ++ Y K L+E +K+ ND +
Sbjct: 372 SKYKKYSNVVEVFDKMRGLG---YFPDSDVIAXVLNAYGK---LQEFDKA-NDVYMEMQE 424
Query: 400 VTTV 403
V V
Sbjct: 425 VGCV 428
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 58/308 (18%), Positives = 122/308 (39%), Gaps = 36/308 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + + + F
Sbjct: 17 TYSTLITHFGKEGLFDAALSWLQKMEQD-RVPGDLVLYSNLIELSRKXCDYSKAISIFSR 75
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S +P++ YN +I + A ++ + + MK VMP+T +Y LL Y +
Sbjct: 76 LKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKXAGVMPNTASYSTLLTMYVENKK 135
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 136 FLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 195
Query: 372 LLIRVYAKEDCLEE------------MEKSI----------NDAFEHKTSVTTVRIMRC- 408
LL RVY + E +E+++ EH+ + ++ M+
Sbjct: 196 LL-RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSR 254
Query: 409 -----------IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
I+S + + +D+ A ++ S+G + + L+ + +V Y V
Sbjct: 255 GIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHA 314
Query: 458 ESVLKEME 465
+ +L E++
Sbjct: 315 KRLLHELK 322
>gi|255661146|gb|ACU25742.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 426
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRL 311
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 197 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG-IEPN 253
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + Y +I Y A + + +
Sbjct: 254 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLH 313
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P D ++L G R+E+ + + +D K+ + MI +
Sbjct: 314 ELKRPDNIPRDIAIHILAGAG--------RIEEATWVFRQAIDAGEVKDITVFERMIHLF 365
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTS 399
SK + ++ MR + Y P NV L++ Y K L E +K+ ND +
Sbjct: 366 SKYKKYGNVVEVFNKMRGLG---YFPDSNVIALVLNAYGK---LHEFDKA-NDVYMEMQE 418
Query: 400 VTTV 403
V V
Sbjct: 419 VGCV 422
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 116/269 (43%), Gaps = 25/269 (9%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P +V YN +I+VFG+ L + E++ + ++PN +Y+ L
Sbjct: 62 KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + I+ M+ + D T +++ Y G +K++ ++
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAK---- 379
++ Y + + L RL+ K NV+ ++ +Y K
Sbjct: 181 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMMMIYGKTLEH 235
Query: 380 ---EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL 436
+ ++EM+ N E S+T I+S + + +D+ A ++ S+G +
Sbjct: 236 EKANNLIQEMQ---NRGIE-PNSIT----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDI 287
Query: 437 CRSLYHSKMVMYASQRRVEEMESVLKEME 465
+ LY + +V Y V + +L E++
Sbjct: 288 DQVLYQTMIVAYERAGLVAHAKRLLHELK 316
>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 632
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 91/226 (40%), Gaps = 8/226 (3%)
Query: 92 LLANVDDLDKVFRVLDEKG--SCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAG 149
L LD ++ +E G C+ N + ++K L EV +W R G
Sbjct: 344 FLGKAGRLDDGLKLFEEMGVSHCI----PNVVTYNTIIKALFESKSRVSEVFSWFERMKG 399
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNGLSDK 208
G + Y+ I + N ++ A L E K Y +L+ A D
Sbjct: 400 SGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDL 459
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
LF++LK+ S S Y +I G+ +D F E+ +PNV+ YN L+
Sbjct: 460 ACELFQELKENCG-SSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALM 518
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+G A M + + M+ +PD N+Y ++L G A +G R
Sbjct: 519 SGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHR 564
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 7/197 (3%)
Query: 124 VELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE-A 182
+EL++Q G ++ E++ R TPM E ++ I+ G + A +F +
Sbjct: 133 LELVEQYGEMWKMIQEMV---RSPICVVTPM---ELSQVIRMLGNAKMIGKAITIFYQIK 186
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
A K T YN+++ ++ G +K L+ ++ E + P VTY+ LIS F +L
Sbjct: 187 ARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQ 246
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
D E+K++ + P Y +I+ + +++ M+ PD TY L
Sbjct: 247 DSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTEL 306
Query: 303 LRGYAHSGNLPRMEKIY 319
+RG +G + Y
Sbjct: 307 IRGLGKAGRIDEAYHFY 323
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 21/210 (10%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS---- 206
G P Y I G+ DLA +LF E + G+ +A + A M L
Sbjct: 436 GFPPCPAAYCSLIDALGKAKRYDLACELFQELK----ENCGSSSARVYAVMIKHLGKAGR 491
Query: 207 -DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
D +LF ++ K +P++ YN L+S R ++D +++++ P++ +YN
Sbjct: 492 LDDAINLFDEMSK-LGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYN 550
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH- 324
++ G + E+ MK + PD +Y +L +H+G E+ EL+K
Sbjct: 551 IILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAG---MFEEAAELMKEM 607
Query: 325 HVDGKEFPLIRAMICAYSKCSVTDRIKKIE 354
+ G E+ LI YS S+ + I K++
Sbjct: 608 NALGFEYDLI-----TYS--SILEAIGKVD 630
>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Vitis vinifera]
Length = 879
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y L+ ++ NG D+ + LF +L E ++P IV YN +I + + ++ A
Sbjct: 486 VYATLVDGFIRNGNLDEARKLF-ELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINR 544
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K +L+P+ FTY+ +I GY+ +++++ M P+ TY L+ G+ G+
Sbjct: 545 MKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGD 604
Query: 312 LPRMEKIY 319
L R KI+
Sbjct: 605 LHRSLKIF 612
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 2/154 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R N+D A LF K + I YNA++ Y G+ + +KK +++P
Sbjct: 496 RNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKR-HLAPDE 554
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
TY+T+I + + +D + F+E+ PNV TY LI G+ + +I++
Sbjct: 555 FTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFRE 614
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
M+A ++P+ TY +L+ + L +E
Sbjct: 615 MQACGLVPNVVTYSILIGSFCKEAKLIDAASFFE 648
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ ++ Y+ D Q +FR++ K P++VTY +LI+ F R + F+E
Sbjct: 556 TYSTVIDGYVKQHDLDGAQKMFREMVK-MKCKPNVVTYTSLINGFCRKGDLHRSLKIFRE 614
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ L PNV TY+ LI + ++ M +P+ T+ L+ G++ +G
Sbjct: 615 MQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNGT 674
Query: 312 LPRMEKIYEL 321
EK E
Sbjct: 675 RAISEKGNEF 684
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 8/189 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I + R V A L +A K L +Y L+ AY G D+ + ++
Sbjct: 347 YNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMT 406
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAF---QEIKDSNLSPNVFTYNYLIAGYMTA 274
+ + P +VTY L+ L++ ++ A +++ + + P+ YN L++G
Sbjct: 407 ERGH-KPDLVTYGALVH---GLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKK 462
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
+ + + M V+PD Y L+ G+ +GNL K++EL
Sbjct: 463 FKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGY 522
Query: 335 RAMICAYSK 343
AMI Y K
Sbjct: 523 NAMIKGYCK 531
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L+ Y G + LF +LK + + P++ TY +I+ F + ++ E+
Sbjct: 242 YNTLIDGYCKKGDMEMANGLFIELKLKGFL-PTVETYGAIINGFCKKGDFKAIDRLLMEM 300
Query: 253 KDSNLSPNVFTYNYLI-AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
L+ NV YN +I A Y + VE I M++ G PD TY L+ G G
Sbjct: 301 NSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECG-CKPDIVTYNTLISGSCRDGK 359
Query: 312 LPRMEKIYE 320
+ +++ E
Sbjct: 360 VSEADQLLE 368
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
+ ++ P Y TL+ F R +D F+ + ++P + YN +I GY M
Sbjct: 477 DQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMK 536
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVK 323
MK + PD TY ++ GY +L +K++ E+VK
Sbjct: 537 DAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVK 582
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 170 NNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
++++A LF E K L T+ TY A++ + G L ++ ++ ++
Sbjct: 253 GDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRG-LTVNVQV 311
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIK---DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
YNT+I + H+ A + I+ + P++ TYN LI+G + GKV E Q
Sbjct: 312 YNTIIDARYKH---GHIVKAVETIEGMIECGCKPDIVTYNTLISG---SCRDGKVSEADQ 365
Query: 286 MMKAG---PVMPDTNTYLLLLRGYAHSGNLPR 314
+++ +MP+ +Y L+ Y G R
Sbjct: 366 LLEQALGKGLMPNKFSYTPLIHAYCKQGGYDR 397
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 38/94 (40%)
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
E P IVTYNTLIS R V + ++ L PN F+Y LI Y +
Sbjct: 337 ECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYD 396
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ M PD TY L+ G +G +
Sbjct: 397 RASNWLIEMTERGHKPDLVTYGALVHGLVVAGEV 430
>gi|255661148|gb|ACU25743.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 425
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRL 311
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 197 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG-IEPN 253
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + Y +I Y A + + +
Sbjct: 254 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLH 313
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P D ++L G R+E+ + + +D K+ + MI +
Sbjct: 314 ELKRPDNIPRDIAIHILAGAG--------RIEEATWVFRQAIDAGEVKDITVFERMIHLF 365
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTS 399
SK + ++ MR + Y P NV L++ Y K L E +K+ ND +
Sbjct: 366 SKYKKYGNVVEVFDKMRGLG---YFPDSNVIALVLNAYGK---LHEFDKA-NDVYMEMQE 418
Query: 400 VTTV 403
V V
Sbjct: 419 VGCV 422
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 59/308 (19%), Positives = 122/308 (39%), Gaps = 36/308 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 11 TYSTLITHFGKEGLFDAALSWLQKMEQD-RVPGDLVLYSNLIELSRKLCDYSKAISIFSR 69
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S +P++ YN +I + A ++ + + M+ V P+T +Y LL Y +
Sbjct: 70 LKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKK 129
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
I+ ++ + MI Y + + K+ MR + + N
Sbjct: 130 FLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 189
Query: 372 LLIRVYAKEDCLEE------------MEKSI----------NDAFEHKTSVTTVRIMR-- 407
LL RVY + E +E+++ EH+ + ++ M+
Sbjct: 190 LL-RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNR 248
Query: 408 ----------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
I+S + + +D+ A ++ S+G + + LY + +V Y V
Sbjct: 249 GIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA 308
Query: 458 ESVLKEME 465
+ +L E++
Sbjct: 309 KRLLHELK 316
>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
Length = 661
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 97/212 (45%), Gaps = 9/212 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y I G+ N + A D F + ++ + T+N L+ A+ G D+ LF D
Sbjct: 400 YNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELF-DEM 458
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+E+N TYN +I++ G + +EA E+K+ L PN+ TY L+ Y + +
Sbjct: 459 RESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRF 518
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP--LIR 335
+ + + MKA + P Y L+ YA G + + ++ DG E ++
Sbjct: 519 KEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMR--ADGLEASTVVLN 576
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
++I A+ + RI + ++++ + E RP
Sbjct: 577 SLINAFGE---DRRIAEAFSVLQFMKENGLRP 605
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/319 (19%), Positives = 131/319 (41%), Gaps = 17/319 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
YNALL Y+ G + + D + ++P TY+ L+ + R + +E
Sbjct: 294 AYNALLKGYVKIGSLKNAEQVL-DEMSQCGVAPDEATYSLLVDAYTRAGRWESARILLKE 352
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ + P+ + ++ ++AG+ W K + + M A V PD + Y +++ +
Sbjct: 353 MEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNC 412
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR----LIPEKEYRP 367
L ++ ++ + +I A+ K DR ++ MR + Y
Sbjct: 413 LGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNI 472
Query: 368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
+N+L +E E +E + + E V + +V Y R + + ++
Sbjct: 473 MINLL-----GEEQRWEGVEAMLAEMKEQGL-VPNIITYTTLVDVYGRSGRFKEAVDCIE 526
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
++ G + ++YH+ + YA + + +V+K M ++ S + A+ G
Sbjct: 527 AMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAF---G 583
Query: 488 QRRKVNQ---VLGLMCKNG 503
+ R++ + VL M +NG
Sbjct: 584 EDRRIAEAFSVLQFMKENG 602
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 2/145 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLK 217
YT + GR A D LK T Y+AL+ AY GL+D ++ + ++
Sbjct: 505 YTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMR 564
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + S V N+LI+ FG + + Q +K++ L P+V TY L+ + +
Sbjct: 565 AD-GLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQF 623
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLL 302
KV IY+ M PD +L
Sbjct: 624 EKVPVIYEEMITSGCAPDRKARAML 648
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 54/311 (17%), Positives = 116/311 (37%), Gaps = 44/311 (14%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+ ++LF + I P YN L+ + ++ + + E E+ ++P+ TY+ L
Sbjct: 274 EAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLL 333
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y A W + + M+A V P + + +L G+ G
Sbjct: 334 VDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEW--------------- 378
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME 387
K F ++R M + + P++ + NV +I + K +CL
Sbjct: 379 QKAFAVLREMHASGVR-----------------PDRHF---YNV-MIDTFGKYNCLGHAM 417
Query: 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVM 447
+ + E V ++ ++ + D+ + L + Y+ + +
Sbjct: 418 DAFDRMREEGIEPDVV-TWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINL 476
Query: 448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG---- 503
++R E +E++L EM+ + + T+ + Y G+ ++ + M +G
Sbjct: 477 LGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPS 536
Query: 504 ---YDVPVNAF 511
Y VNA+
Sbjct: 537 PTMYHALVNAY 547
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 71/191 (37%), Gaps = 5/191 (2%)
Query: 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KT 189
G R A+E+ + R P+ Y I G + + AE + L
Sbjct: 445 GGRHDRAIELFDEMRES---NCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPN 501
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
I TY L+ Y +G + +K + + PS Y+ L++ + + L DH
Sbjct: 502 IITYTTLVDVYGRSGRFKEAVDCIEAMKAD-GLKPSPTMYHALVNAYAQRGLADHALNVV 560
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ ++ L + N LI + + + Q MK + PD TY L++
Sbjct: 561 KAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRV 620
Query: 310 GNLPRMEKIYE 320
++ IYE
Sbjct: 621 EQFEKVPVIYE 631
>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
Length = 742
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 83/177 (46%), Gaps = 4/177 (2%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
I TYN +LG + G+ ++ ++LF +K N+ +YN + R+ + +
Sbjct: 199 NIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNR-ESYNIWLLGLVRIGKLLEAQLV 257
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+E+ D + PNV++YN ++ G + + ++M + V+PDT TY LL GY H
Sbjct: 258 LKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCH 317
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY 365
+G + + L + DG I YS RI + E L++ + EK Y
Sbjct: 318 TGKVSEANNV--LREMMRDGCSPNNYTCNILLYSLWK-EGRISEAEELLQKMNEKGY 371
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 131/301 (43%), Gaps = 44/301 (14%)
Query: 48 RDLCAPATHTVFPTLVRLLSETLTYPDARVRKDL--------TQTVSALRDELLANVDDL 99
RD C+P +T L L E + + + T T + + D L N L
Sbjct: 333 RDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNN-GKL 391
Query: 100 DKVFRVLD---EKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTK 156
DK +++ GS N Y + L+ SR + ++++ Y T ++
Sbjct: 392 DKAIEIVNGMWTHGSAALGNLGNSY--IGLVDDSDSRKKCMPDLIS-------YSTIIS- 441
Query: 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRD 215
G+ AGR+ A F E K+L+ Y+ + ++ G K S FR
Sbjct: 442 -----GLCKAGRVGE---AKKKFIEMMGKNLQPDSAIYDVFIHSFCKEG---KISSAFRV 490
Query: 216 LK--KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
LK ++ + ++ TYN+LI G + + E+++ +SP+V YN +++
Sbjct: 491 LKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCE 550
Query: 274 AWMWGKVEE----IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329
G+V++ + +M++ G + P+ +++ +L++ + + + +++I+E+ + K
Sbjct: 551 G---GRVKDAPSVLDEMLQKG-ISPNISSFSILIKAFCKACDFSAVDEIFEIALNVCGHK 606
Query: 330 E 330
E
Sbjct: 607 E 607
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 79/201 (39%), Gaps = 6/201 (2%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+I YN LL + G D L +D+ + +SP T+N LI + +D
Sbjct: 20 SIYLYNVLLRSCTKEGRVDCVSWLCKDMVA-SGVSPETYTFNVLIGLLCDSGCLDDAREL 78
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F ++ + PN +++ L+ GY A K E+ M+ P+ Y L+ +
Sbjct: 79 FDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCK 138
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
G EK+ + ++ + A I A +I M+ I E P
Sbjct: 139 EGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQ-IDEVLGLPQ 197
Query: 369 LNV----LLIRVYAKEDCLEE 385
N+ L++ + KE LEE
Sbjct: 198 PNIITYNLMLGGFCKEGMLEE 218
Score = 45.1 bits (105), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 68/336 (20%), Positives = 129/336 (38%), Gaps = 42/336 (12%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN ++ NG+ + L R L + + P VTY TL+ + V +E
Sbjct: 272 SYNIVMDGLCKNGVLFDARMLMR-LMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLRE 330
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKV---EEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ SPN +T N L+ + W G++ EE+ Q M + DT T +++ G +
Sbjct: 331 MMRDGCSPNNYTCNILL---YSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCN 387
Query: 309 SGNLPRMEKIYELVKHH---------------VDGKE-----------FPLIRAMICAYS 342
+G L + +I + H VD + + I + +C
Sbjct: 388 NGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAG 447
Query: 343 KCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSV 400
+ V + KK +M K +P + + I + KE + + + D E K
Sbjct: 448 R--VGEAKKKFIEMMG----KNLQPDSAIYDVFIHSFCKEGKISSAFRVLKD-MEKKGCN 500
Query: 401 TTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESV 460
T++ ++ N + ++ + G S+Y++ + RV++ SV
Sbjct: 501 KTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSV 560
Query: 461 LKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496
L EM I + +F I+ A+ V+++
Sbjct: 561 LDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIF 596
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
PSI YN L+ + VD + +++ S +SP +T+N LI + E+
Sbjct: 19 PSIYLYNVLLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDAREL 78
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ M P+ ++ +L+RGY +G
Sbjct: 79 FDKMPEKGCEPNEYSFGILVRGYCRAG 105
>gi|449444598|ref|XP_004140061.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27270-like [Cucumis sativus]
Length = 1062
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 7/146 (4%)
Query: 179 FAEAANKHLKTIG------TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
FA +H+ +G TYN ++ Y DK +F + + + +SP Y L
Sbjct: 791 FASRIYEHMIALGIVPSIQTYNTMISVYGRGRKLDKAVEMF-NAARSSGLSPDEKAYTNL 849
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
IS +G+ F+E+ + + P + +YN ++ Y A + + E + + M+ +
Sbjct: 850 ISCYGKAGKTHEASLLFKEMLEEGVKPGMVSYNIMVNVYANAGLHEETENLLKAMEQDAI 909
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKI 318
+PD+ TY L+R Y S EKI
Sbjct: 910 VPDSFTYFSLIRAYTQSCKYSEAEKI 935
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 2/165 (1%)
Query: 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRD 215
+ Y I GR +D A ++F A + L Y L+ Y G + + LF++
Sbjct: 809 QTYNTMISVYGRGRKLDKAVEMFNAARSSGLSPDEKAYTNLISCYGKAGKTHEASLLFKE 868
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ +E + P +V+YN +++V+ L + E + ++ + P+ FTY LI Y +
Sbjct: 869 MLEEG-VKPGMVSYNIMVNVYANAGLHEETENLLKAMEQDAIVPDSFTYFSLIRAYTQSC 927
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ + E+I M+ + Y LLL A +G + + E++Y+
Sbjct: 928 KYSEAEKIINSMQEKGIPTTCAHYDLLLSALAKAGMIRKAERVYD 972
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 5/191 (2%)
Query: 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-T 189
G + A+E+ N R G ++ YT I G+ A+ LF E + +K
Sbjct: 821 GRKLDKAVEMFNAARSS---GLSPDEKAYTNLISCYGKAGKTHEASLLFKEMLEEGVKPG 877
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ +YN ++ Y GL ++ ++L + ++++A I P TY +LI + + E
Sbjct: 878 MVSYNIMVNVYANAGLHEETENLLKAMEQDA-IVPDSFTYFSLIRAYTQSCKYSEAEKII 936
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+++ + Y+ L++ A M K E +Y ++ + PD L+RGY
Sbjct: 937 NSMQEKGIPTTCAHYDLLLSALAKAGMIRKAERVYDELQTAGLSPDVTCNRTLMRGYLDY 996
Query: 310 GNLPRMEKIYE 320
G + K +E
Sbjct: 997 GYVREGIKFFE 1007
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/319 (20%), Positives = 135/319 (42%), Gaps = 16/319 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY ++ + + G S++ +F ++K I P VTYN LIS+ + D + +++
Sbjct: 296 TYTVVINSLVKEGHSEEAFKVFNEMKNCGFI-PEEVTYNLLISLSIKRENSDEVLRLYKD 354
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++D ++ P+ +T + L+ + + K ++ M++ V+ D Y LL+R Y G
Sbjct: 355 MRDKDIVPSNYTCSSLLTLFYKNGDYSKALSLFSEMESKKVVVDEVIYGLLIRIYGKLGL 414
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP-WLN 370
K +E + ++ L+ + V + E + +I + R WL+
Sbjct: 415 YEDAHKTFE------EMEQLGLLTDEKSYLAMAQVHLNSRNFEKALDIIELMKSRNIWLS 468
Query: 371 VLLIRVYAKEDCLEEMEKSINDAFE--HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
V + ++E +S F+ KT + R I++ Y + + V+K +F+
Sbjct: 469 RFAYIVSLQCYVMKEDIRSAESTFQALSKTGLPDARSCIYILNLYLKLDLVNKAKDFIAH 528
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
G LY + +Y + E+ E +++ M+ ++ K + + G
Sbjct: 529 IRKDGVVFDEELYKLVLRVYCKEGLSEDAEILIELMKKDELFVDNKFMETFSFMFKLDGG 588
Query: 489 RRKVNQVLGLMCKNGYDVP 507
+ + ++ GYD P
Sbjct: 589 EKNESTIV------GYDQP 601
>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 498
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 9/200 (4%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGR 168
KG CL + S G L K + R AL++L RR G Y I +
Sbjct: 138 KGLCL--KVSYGTLINGLCKV--GQARAALQLL---RRVDGKLVQPNVVMYNTIIDSMCK 190
Query: 169 INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+ V+ A DL++E ++ + + TY+AL+ + G LF + E NI P +
Sbjct: 191 VKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILE-NIKPDVY 249
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
T+N L+ F + + + F + + PNV TY L+ GY K I+ M
Sbjct: 250 TFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTM 309
Query: 288 KAGPVMPDTNTYLLLLRGYA 307
G V PDT +Y +++ G+
Sbjct: 310 AQGGVNPDTQSYNIMINGFC 329
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 13/170 (7%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA---F 249
YN ++ + L ++ L+ ++ E ISP +VTY+ LIS F +V ++ A F
Sbjct: 181 YNTIIDSMCKVKLVNEAFDLYSEMVSEG-ISPDVVTYSALISGF---FIVGKLKDAIDLF 236
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
++ N+ P+V+T+N L+ G+ + + ++ MM + P+ TY L+ GY
Sbjct: 237 NKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLV 296
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359
+ + I+ + + MI + K IKK++ M L
Sbjct: 297 KQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCK------IKKVDEAMNL 340
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 52/101 (51%)
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
+ P++V YNT+I ++ LV+ + E+ +SP+V TY+ LI+G+
Sbjct: 174 VQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAI 233
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
+++ M + PD T+ +L+ G+ G + + ++ ++
Sbjct: 234 DLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMM 274
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 81/168 (48%), Gaps = 5/168 (2%)
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL 212
+T G G++ + A DLF + +++K + T+N L+ + +G + +++
Sbjct: 214 VTYSALISGFFIVGKLKD---AIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTV 270
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
F + K+ I P++VTY +L+ + + V+ + F + ++P+ +YN +I G+
Sbjct: 271 FAMMMKQG-IKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFC 329
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ +++ M ++P+ TY L+ G SG + K+ +
Sbjct: 330 KIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVD 377
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 178 LFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
+FA + +K + TY +L+ Y +K S+F + + ++P +YN +I+ F
Sbjct: 270 VFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMA-QGGVNPDTQSYNIMINGF 328
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
++ VD F+++ N+ PNV TY LI G + ++ M V PD
Sbjct: 329 CKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDI 388
Query: 297 NTY 299
TY
Sbjct: 389 ITY 391
>gi|410110095|gb|AFV61127.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
montevidensis]
Length = 418
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 123 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 181
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M++ +
Sbjct: 182 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIE 241
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 242 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKRL 301
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/308 (19%), Positives = 124/308 (40%), Gaps = 36/308 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 1 TYSTLITHFGKEGLFDAALSWLQKMEQD-RVPGDLVLYSNLIELSRKLCDYSKAISIFSR 59
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S +P++ YN +I + A ++ + + MKA VMP+T +Y LL Y +
Sbjct: 60 LKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTTSYSTLLTMYVENKK 119
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 120 FLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 179
Query: 372 LLIRVYAKEDCLEE------------MEKSI----------NDAFEHKTSVTTVRIMR-- 407
LL RVY + E +E+++ EH+ + ++ M+
Sbjct: 180 LL-RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSR 238
Query: 408 ----------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
I+S + + +D+ A ++ S+G + + L+ + +V Y V
Sbjct: 239 GIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHA 298
Query: 458 ESVLKEME 465
+ +L E++
Sbjct: 299 KRLLHELK 306
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 108/244 (44%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 187 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG-IEPN 243
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + +I Y A + + +
Sbjct: 244 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKRLLH 303
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P DT ++L G R+E+ + + +D K+ + MI
Sbjct: 304 ELKRPDNIPRDTAIHILAGAG--------RIEEATYVFRQAIDAGEVKDITVFERMIHLL 355
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI--RVYAKEDCLEEMEKSINDAFEHKTS 399
SK + ++ MR + Y P +V+ I Y K L+E +K+ ND +
Sbjct: 356 SKYKKYSNVVEVFDKMRGLG---YFPDSDVIAIVLNAYGK---LQEFDKA-NDVYMEMQE 408
Query: 400 VTTV 403
V V
Sbjct: 409 VGCV 412
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 63/123 (51%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ A+ G D + + +++E N P++VT+N++++ + ++ F E
Sbjct: 47 TYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDE 106
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ L+P+V +YN L++GY + ++ M ++PD T+ L+ +GN
Sbjct: 107 MVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGN 166
Query: 312 LPR 314
L +
Sbjct: 167 LEQ 169
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 3/175 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLK 217
+T I + N++ A L A+ + L+ T+ AL+ + G D +++
Sbjct: 154 FTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMR 213
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K I PS+V YN LI+ + +L +D +E++ + P+V TY+ +I+GY
Sbjct: 214 K-CGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNL 272
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHVDGKEF 331
++ Q M V+PD TY L+RG L +++E +++ V EF
Sbjct: 273 DSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEF 327
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 129/291 (44%), Gaps = 36/291 (12%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ YNAL+ Y G D + L R+++ + + P +VTY+T+IS + + V ++++A
Sbjct: 220 SVVCYNALINGYCKLGRMDLARELIREMEAK-RVKPDVVTYSTIISGYCK---VGNLDSA 275
Query: 249 F---QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
F Q++ + P+ TY+ LI G E+++ M V PD TY L+ G
Sbjct: 276 FQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDG 335
Query: 306 YAHSGNLPRMEKIY-ELVKHHV--DGKEFPLI--------------RAMICAYSKCSVTD 348
+ GN+ + ++ E+++ V D + ++ R + Y + V D
Sbjct: 336 HCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPD 395
Query: 349 RIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC 408
I K +ALM + E++ V L++ + + ++E +K + + +
Sbjct: 396 NI-KYDALMLCCSKAEFKSV--VALLKGFCMKGLMKEADKVYQSMLDRNWKLDG-SVYSI 451
Query: 409 IVSSYFRCNAVDKLANFVKRAESAGW--------RLCRSLYHSKMVMYASQ 451
++ + R V K +F K+ +G+ L R L+ MV+ A
Sbjct: 452 LIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADN 502
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 9/203 (4%)
Query: 116 RHS---NGYAFVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN 170
RH N Y + L++ L +R RL A+ V+ R +T AG ++
Sbjct: 3 RHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELD 62
Query: 171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
+ L E N + T+N+++ G + + +F ++ +E ++P +V+YN
Sbjct: 63 GAERVVSLMREEGNAKPNLV-TFNSMVNGLCKAGRMEGARKVFDEMVREG-LAPDVVSYN 120
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW-MWGKVEEIYQMMKA 289
TL+S + ++ + A F E+ L P+V T+ LI A + V + QM +
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 180
Query: 290 GPVMPDTNTYLLLLRGYAHSGNL 312
G M + T+ L+ G+ G L
Sbjct: 181 GLRMNEV-TFTALIDGFCKKGFL 202
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 66/316 (20%), Positives = 119/316 (37%), Gaps = 45/316 (14%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ A G ++ + D++ A +P+ VTYNTL++ F R +D E
Sbjct: 12 TYNILVRALCARGRLEEAVGVVGDMRG-AGCAPNAVTYNTLVAAFCRAGELDGAERVVSL 70
Query: 252 IKD-SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+++ N PN+ T+N ++ G A +++ M + PD +Y LL GY G
Sbjct: 71 MREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVG 130
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR--PW 368
L ++ + + ++I A K ++ + A MR E+ R
Sbjct: 131 CLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR---ERGLRMNEV 187
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMR-CIVSSYFRCNAVDKLANFVK 427
LI + K+ L++ ++ V MR C + C
Sbjct: 188 TFTALIDGFCKKGFLDD-------------ALLAVEEMRKCGIQPSVVC----------- 223
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
Y++ + Y R++ +++EME ++ T+ + Y G
Sbjct: 224 -------------YNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVG 270
Query: 488 QRRKVNQVLGLMCKNG 503
Q+ M K G
Sbjct: 271 NLDSAFQLNQKMLKKG 286
>gi|255551975|ref|XP_002517032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543667|gb|EEF45195.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 875
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/353 (20%), Positives = 149/353 (42%), Gaps = 23/353 (6%)
Query: 143 WRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMY 202
WR AG M+ E Y+ I G +V AA +FA ++ T+ +N ++ AY +
Sbjct: 494 WRFHLAG---NMSSECYSANIDAYGERGHVKEAARVFACRLEQNKLTVLEFNVMIKAYGF 550
Query: 203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF 262
+K LF ++ + P +Y++L+ + L D + ++++++ L +
Sbjct: 551 GKNYEKACDLFDSMESHG-VVPDKCSYSSLVQILASADLPDKAKHYLKKMQEAGLVSDCV 609
Query: 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
Y +I+ ++ EE+Y+ M V PD Y +L+ +A SG + + +
Sbjct: 610 QYCAVISSFVKLGKLEMAEEVYKEMVGFDVKPDIIVYGVLINAFADSGCVKEAISYIDAM 669
Query: 323 KHHVDGKEFP----LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRV 376
K G P + ++I Y+K +++ + +L+ + P + + +I +
Sbjct: 670 K----GAGLPGNTVIYNSLIKLYTKVGY---LREAQETYKLLQSSDVGPETYSSNCMIDL 722
Query: 377 YAKEDCLEEMEKSINDAFEHKTSVT--TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW 434
Y+++ ++ E+ I ++ + K T +M C+ Y R ++ K+ G
Sbjct: 723 YSEQSMVKPAEE-IFESMKRKGDANEFTYAMMLCM---YKRLGWFEQAIQIAKQMRELGL 778
Query: 435 RLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
Y++ + +YA R +E KEM I TF + CG
Sbjct: 779 LTYLLSYNNVLGLYALDGRFKEAVGTFKEMVGAGIQPDDCTFKSLGIVLVKCG 831
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 132/340 (38%), Gaps = 16/340 (4%)
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSL 212
++ Y I G+ + A+D+FAE K L T T+N ++ G ++ L
Sbjct: 328 LSSHTYNTMIDTYGKAGQIKEASDIFAEMLRKRILPTTVTFNTMIHICGNQGQLEEVALL 387
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
+ + +E P TYN LI + + ++ + F+ +K L P++ +Y L+ +
Sbjct: 388 MQKM-EELRCPPDTRTYNILIFIHAKHNDINMAASYFKRMKKDQLQPDLVSYRTLLYAFS 446
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK-EF 331
M E + M + D T L R Y +G L + + H+ G
Sbjct: 447 IRHMVNDAENLVSEMDEKGIEIDEYTQSALTRMYIEAGMLEK--SWLWFWRFHLAGNMSS 504
Query: 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN 391
A I AY + ++ A RL K L VL V K + +
Sbjct: 505 ECYSANIDAYGERGHVKEAARVFAC-RLEQNK-----LTVLEFNVMIKAYGFGKNYEKAC 558
Query: 392 DAFEHKTSVTTVRIMRCIVSSYFRCNAV----DKLANFVKRAESAGWRLCRSLYHSKMVM 447
D F+ S V +C SS + A DK +++K+ + AG Y + +
Sbjct: 559 DLFDSMESHGVVPD-KCSYSSLVQILASADLPDKAKHYLKKMQEAGLVSDCVQYCAVISS 617
Query: 448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
+ ++E E V KEM + + + ++ A+A G
Sbjct: 618 FVKLGKLEMAEEVYKEMVGFDVKPDIIVYGVLINAFADSG 657
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 59/309 (19%), Positives = 118/309 (38%), Gaps = 29/309 (9%)
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
++ +F K +++ YN +I + G+ ++E E+ +SP TY
Sbjct: 185 ERAMEIFEWFKSRGCYELNVIHYNIMIRILGKAKQWRYLECLCNEMSFKRISPINSTYGT 244
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY------E 320
LI Y + K + + M + PD T ++++ Y +G + E+ + E
Sbjct: 245 LIDVYSKGGLREKALDWLEKMNKQGMEPDEVTMGIVVQMYKKAGEFQKAEEFFKKWSLRE 304
Query: 321 LVKHHVDGKEFPLIR---------------AMICAYSKCSVTDRIKKIEALM---RLIPE 362
++H V GK + MI Y K I A M R++P
Sbjct: 305 ALRHKVTGKASVRVENERQMDVSLSSHTYNTMIDTYGKAGQIKEASDIFAEMLRKRILPT 364
Query: 363 KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKL 422
N +I + + LEE+ + E + T R ++ + + N ++
Sbjct: 365 T---VTFNT-MIHICGNQGQLEEVALLMQKMEELRCPPDT-RTYNILIFIHAKHNDINMA 419
Query: 423 ANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYA 482
A++ KR + + Y + + ++ + V + E+++ EM+ I+ + T +
Sbjct: 420 ASYFKRMKKDQLQPDLVSYRTLLYAFSIRHMVNDAENLVSEMDEKGIEIDEYTQSALTRM 479
Query: 483 YATCGQRRK 491
Y G K
Sbjct: 480 YIEAGMLEK 488
>gi|212274745|ref|NP_001130291.1| uncharacterized protein LOC100191385 [Zea mays]
gi|194688762|gb|ACF78465.1| unknown [Zea mays]
gi|223949231|gb|ACN28699.1| unknown [Zea mays]
gi|414874010|tpg|DAA52567.1| TPA: salt-inducible protein [Zea mays]
Length = 716
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/349 (23%), Positives = 144/349 (41%), Gaps = 41/349 (11%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE--AANKHLKTIGT 192
RLAL++L+ G P+ Y+ I A R A + F AA+ L T
Sbjct: 208 RLALDMLD-------AGVPLDNITYSTLITAARRCRQFAKAVEWFERMYAADGVLPDEVT 260
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y+A+L Y G+ ++ +LF D + + P V + L +FG D ++ F+E+
Sbjct: 261 YSAVLDVYAQLGMKEEVLALF-DRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEM 319
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS--- 309
++ + PN+F YN L+ G +++ M V P+ T L + Y +
Sbjct: 320 REVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMIDQGVEPNARTLTALAKIYGRARWG 379
Query: 310 -GNLPRMEKIYELVKHHVDGKEFPLIRAMIC--AYSKCSVTDRIKKIEALMRLIPEKEYR 366
L +K+ EL K D +++C S C+ + + E L + + E R
Sbjct: 380 RDALQLWDKMREL-KLPAD--------SILCNTLLSMCADVGLVAEAEQLFNEMKDPECR 430
Query: 367 P------WLNVLLIRVYAK----EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC 416
W +I +Y + L+ + + E T+ +++C+ +
Sbjct: 431 DVPKPDKWSYTAMINIYGSNGDTDSALQLFAEMLKGGIEPNIMSYTI-VIQCLGKARRIQ 489
Query: 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
AV+ L + +++ RLC L ++ +S EEME VL +E
Sbjct: 490 QAVEVLESGLEKGLKPDDRLCGCLL--SVIALSSG---EEMEMVLSSLE 533
>gi|326529783|dbj|BAK04838.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 87/206 (42%), Gaps = 36/206 (17%)
Query: 178 LFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
+ AE +H ++ +YN ++ + G K LF + ++ + P +VTYN++I+
Sbjct: 193 MMAEKGAEHSPSVVSYNLVIHGFFKEGEISKACHLFHGMIQQGYV-PDVVTYNSVINALC 251
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM---- 293
+ +D E + + +++ P+ TYN LI GY+ + + ++M++ VM
Sbjct: 252 KARAMDKAEVVLRSMVHNSVQPDAVTYNSLIHGYLILGQLKETFRLLKVMRSQGVMPSLV 311
Query: 294 -------------------------------PDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
PD Y ++L GYA G+L +M + E++
Sbjct: 312 TCSSVMDYLCKHGKIKEAEEMFYSRAVNGRKPDIVLYSIMLHGYAIEGSLVKMIDLCEVM 371
Query: 323 KHHVDGKEFPLIRAMICAYSKCSVTD 348
+ P +I AY+K + D
Sbjct: 372 ARDGVVPDLPCFNILINAYAKYGMMD 397
>gi|410110101|gb|AFV61130.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
viburnoides]
Length = 337
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 76 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 134
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M++ +
Sbjct: 135 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIE 194
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 195 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKRL 254
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 77/166 (46%), Gaps = 22/166 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 140 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG-IEPN 196
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + +I Y A + + +
Sbjct: 197 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGXEIDQILFQTMIVAYERAGLVAHAKRLLH 256
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+K +P DT ++L G R+E+ + + +D E
Sbjct: 257 ELKRPDNIPRDTAIHILAGAG--------RIEEATYVFRQAIDAGE 294
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P +V YN +I+VFG+ L + E+K + + PN +Y+ L
Sbjct: 5 KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTL 63
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ Y+ + + ++ M+ + D T +++ Y G +K++
Sbjct: 64 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF 115
>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 550
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 5/160 (3%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
N +D A LF + K L I TY++L+ +G LF + + SP+++T
Sbjct: 372 NRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIH-DGGPSPNVIT 430
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
YN ++ ++ LVD F + + L+PNV +YN LI GY + + +++ M
Sbjct: 431 YNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMH 490
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG 328
++PD+ TY L+ G SG R+ +EL DG
Sbjct: 491 RRNLVPDSVTYNCLIDGLCKSG---RISHAWELFNVMHDG 527
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 3/144 (2%)
Query: 177 DLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236
D FAE + +YN L+ Y N D+ SLF + + ++P+IVTY++LI
Sbjct: 347 DTFAECGIT--PDVWSYNILIIGYCKNNRIDEALSLFNKMNYK-KLAPNIVTYSSLIDGL 403
Query: 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296
+ + + F I D SPNV TYN ++ + K E++ +M + P+
Sbjct: 404 CKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNV 463
Query: 297 NTYLLLLRGYAHSGNLPRMEKIYE 320
++Y +L+ GY S + ++E
Sbjct: 464 SSYNILINGYCKSKRIDEAMNLFE 487
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 93/201 (46%), Gaps = 16/201 (7%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA--AF 249
TYN L+ A G+ K + R+L E P +VT+NTL+S G L D +EA F
Sbjct: 290 TYNILIDALCKKGMLGKAHDM-RNLMIERGQRPDLVTFNTLMS--GYCLYNDVVEARKLF 346
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ ++P+V++YN LI GY + ++ M + P+ TY L+ G S
Sbjct: 347 DTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKS 406
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366
G R+ +EL DG P + M+ A K + D K IE L L+ E+
Sbjct: 407 G---RISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVD--KAIE-LFNLMFERGLT 460
Query: 367 PWLNV--LLIRVYAKEDCLEE 385
P ++ +LI Y K ++E
Sbjct: 461 PNVSSYNILINGYCKSKRIDE 481
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN +L A L DK LF +L E ++P++ +YN LI+ + + +D F+E
Sbjct: 430 TYNIMLDALCKIQLVDKAIELF-NLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEE 488
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
+ NL P+ TYN LI G + E++ +M G D TY +L ++
Sbjct: 489 MHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDAFS 544
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 77/196 (39%), Gaps = 6/196 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ GL+ + L ++ + + P++V YN ++ + LV + +
Sbjct: 185 TYGTLINGLCKIGLTREAFELLHKMEGQV-VRPNVVIYNMIVDGLCKDGLVTEARDLYSD 243
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + P+VFTY LI G+ W +V + M V + TY +L+ G
Sbjct: 244 VVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGM 303
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--WL 369
L + + L+ + ++ Y C D ++ L E P W
Sbjct: 304 LGKAHDMRNLMIERGQRPDLVTFNTLMSGY--CLYNDVVEA-RKLFDTFAECGITPDVWS 360
Query: 370 NVLLIRVYAKEDCLEE 385
+LI Y K + ++E
Sbjct: 361 YNILIIGYCKNNRIDE 376
>gi|255661154|gb|ACU25746.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSXGVDIDQVLYQTMIVAYERAGLVAHAKRL 311
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 197 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG-IEPN 253
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ + + Y +I Y A + + +
Sbjct: 254 SITYSTIISIWGKVGKLDRAAMLFQKLRSXGVDIDQVLYQTMIVAYERAGLVAHAKRLLH 313
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P D ++L A +G R+E+ + + +D K+ + MI +
Sbjct: 314 ELKRPDNIPRDIAIHIL-----AGAG---RIEEATWVFRQAIDAGEVKDITVFERMIHLF 365
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTS 399
SK + ++ MR + Y P NV L++ Y K L E +K+ ND +
Sbjct: 366 SKYKKYGNVVEVFDKMRGLG---YFPDSNVIALVLNAYGK---LHEFDKA-NDVYMEMQE 418
Query: 400 VTTV 403
V V
Sbjct: 419 VGCV 422
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 55/269 (20%), Positives = 115/269 (42%), Gaps = 25/269 (9%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P +V YN +I+VFG+ L + E++ + ++PN +Y+ L
Sbjct: 62 KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + I+ M+ + D T +++ Y G +K++ ++
Sbjct: 121 LTMYVENKKFLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAK---- 379
++ Y + + L RL+ K NV+ ++ +Y K
Sbjct: 181 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMMMIYGKTLEH 235
Query: 380 ---EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL 436
+ ++EM+ N E S+T I+S + + +D+ A ++ S G +
Sbjct: 236 EKANNLIQEMQ---NRGIE-PNSIT----YSTIISIWGKVGKLDRAAMLFQKLRSXGVDI 287
Query: 437 CRSLYHSKMVMYASQRRVEEMESVLKEME 465
+ LY + +V Y V + +L E++
Sbjct: 288 DQVLYQTMIVAYERAGLVAHAKRLLHELK 316
>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
Length = 764
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 94/212 (44%), Gaps = 22/212 (10%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C + + Y +E MK +G P T +T G+ +I
Sbjct: 489 GFCKSGKVNKAYQLLEEMKTMGHHP-----------------TVVTYGSVVDGL---AKI 528
Query: 170 NNVDLAADLFAEAANKHLKTIGT-YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ +D A LF EA + ++ Y++L+ + G D+ + ++ ++ ++P++ T
Sbjct: 529 DRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKG-LTPNVYT 587
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
+N L+ + ++ FQ +KD +PN TY LI G + K +Q M+
Sbjct: 588 WNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQ 647
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ P+T TY ++ G A SGN+ + ++E
Sbjct: 648 KQGLKPNTITYTAMISGLAKSGNVAQASSLFE 679
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 115/288 (39%), Gaps = 23/288 (7%)
Query: 184 NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243
N HL T L+ + G D SL ++K IV YN I FG++ VD
Sbjct: 95 NVHLLT-----TLIRVFSREGRVDAALSLLDEMKSN-TFDADIVLYNVCIDCFGKVGKVD 148
Query: 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
F E+K + L P+ TY ++ A + EI++ M+ +P Y ++
Sbjct: 149 MAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMI 208
Query: 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK 363
GY +G + ++ Y L++ P + A C + + K + +R+ E
Sbjct: 209 MGYGSAG---KFDEAYSLLERQRAKGCIPSVVAYNCIL---TCLGKKGKTDKALRIFEEM 262
Query: 364 EYRPWLNV----LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419
+ N+ ++I + K +E K + DA + VR + ++ + +
Sbjct: 263 KRDAMPNLPTYNIIIGMLCKAGNVEAAFK-VRDAMKEAGLFPNVRTINIMIDRLCKAQKL 321
Query: 420 DKLANFVKRAESAGWRLCR---SLYHSKMVMYASQRRVEEMESVLKEM 464
D+ + E +++C + + S + Q RV++ + + M
Sbjct: 322 DEACSIF---EGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERM 366
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 19/164 (11%)
Query: 185 KHLK---TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241
+H K Y L+GA G SD+ +LF ++ E ++ TLI VF R
Sbjct: 53 RHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQMQ-ELGYEVNVHLLTTLIRVFSREGR 111
Query: 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE---EIYQMMKAGPVMPDTNT 298
VD + E+K + ++ YN I + GKV+ + + MKA ++PD T
Sbjct: 112 VDAALSLLDEMKSNTFDADIVLYNVCIDCFGKV---GKVDMAWKFFHEMKANGLVPDDVT 168
Query: 299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342
Y ++ + L +I+E ++ + R + CAY+
Sbjct: 169 YTSMMGVLCKANRLDEAVEIFEQMEQN---------RQVPCAYA 203
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 9/137 (6%)
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
+ SP ++ NT + + + A F+EIK P+ +Y+ LI + A +
Sbjct: 404 SGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARE 463
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
E+Y MK + DT Y ++ G+ SG ++ K Y+L++ P +
Sbjct: 464 TYELYYAMKDQGCVLDTRAYNTVIDGFCKSG---KVNKAYQLLEEMKTMGHHPTV----- 515
Query: 340 AYSKCSVTDRIKKIEAL 356
+ SV D + KI+ L
Sbjct: 516 -VTYGSVVDGLAKIDRL 531
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 14/149 (9%)
Query: 170 NNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
V+ A E NK L I TYN+++ Y +G K Q + + +SP ++T
Sbjct: 424 GQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVN-KVSPDLIT 482
Query: 229 YNTLISVFGRLLLVDHMEAAFQ---EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE--- 282
YNTLI + + D M AF+ ++ + P+V TYN LI G+ + G V+E
Sbjct: 483 YNTLIHGY---IKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFS---VHGNVQEAGW 536
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
I++ M A + PD TY+ ++ G+ +GN
Sbjct: 537 IFEKMCAKGIEPDRYTYMSMINGHVTAGN 565
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
+D A LF N+ L+ I TYN L+ G DK L+ D+ I P+ VTY+
Sbjct: 356 LDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSR-EIFPNHVTYS 414
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
LI V+ E+ + + PN+ TYN +I GY + K ++ Q M
Sbjct: 415 ILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVN 474
Query: 291 PVMPDTNTYLLLLRGY 306
V PD TY L+ GY
Sbjct: 475 KVSPDLITYNTLIHGY 490
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 4/153 (2%)
Query: 174 LAADLF--AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
LAAD + ++N + T T N ++ Y DK ++ +++K + P +VT+N
Sbjct: 78 LAADAYRLVFSSNSEVNTY-TLNIMVHNYCKALEFDKVDAVISEMEKRC-VFPDVVTHNV 135
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
++ R + A + L P + TYN ++ G + MW K E+++ M
Sbjct: 136 MVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFG 195
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
V PD ++ +L+ G+ G + KIY+ ++H
Sbjct: 196 VAPDVRSFTILIGGFCRVGEIEEALKIYKEMRH 228
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 2/154 (1%)
Query: 168 RINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R ++D A DL+ + ++ + TY+ L+ ++ G + F D I P+I
Sbjct: 387 RQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFG-FLDEMINKGILPNI 445
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
+TYN++I + R V + Q++ + +SP++ TYN LI GY+ ++ M
Sbjct: 446 MTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNM 505
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
M+ V PD TY +L+ G++ GN+ I+E
Sbjct: 506 MEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFE 539
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
++ L+G + G ++ ++++++ I P +V+++ LI +F R +DH A +E
Sbjct: 202 SFTILIGGFCRVGEIEEALKIYKEMRHRG-IKPDLVSFSCLIGLFARRGKMDHAMAYLRE 260
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
++ L P+ Y +I G+ A + + M +PD TY LL G
Sbjct: 261 MRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 314
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ A G ++ +L + + + P IVTYN+++ R + D F+E
Sbjct: 132 THNVMVDARFRAGDAEAAMALVDSMVSKG-LKPGIVTYNSVLKGLCRSGMWDKAWEVFKE 190
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAH 308
+ D ++P+V ++ LI G+ G++EE IY+ M+ + PD ++ L+ +A
Sbjct: 191 MDDFGVAPDVRSFTILIGGFCRV---GEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFAR 247
Query: 309 SGNL 312
G +
Sbjct: 248 RGKM 251
>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
Length = 741
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 142/346 (41%), Gaps = 13/346 (3%)
Query: 162 GIKFAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G+ AGR A L +A K + + YNAL+ Y G + +F+ ++ +
Sbjct: 188 GLCGAGRAGE---AVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKG 244
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
+ P++ TY LI F + V+ + + ++ L+PNV TY LI G +
Sbjct: 245 CL-PNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHA 303
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK-IYELVKHHVDGKEFPLIRAMIC 339
+ M+A + P+ T L+L+ G + ++ + LV+ + + + +MI
Sbjct: 304 FRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQV-IYTSMID 362
Query: 340 AYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHK 397
A K + + LM+ I + + P ++ LI +E+ L E +ND E
Sbjct: 363 ALCK---SGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESG 419
Query: 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
V ++ + R D R +AG + Y + Y R+E+
Sbjct: 420 VQANAVPF-TILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDA 478
Query: 458 ESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
ES++ +M ++ + + T+ + YA G + L M NG
Sbjct: 479 ESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNG 524
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/298 (19%), Positives = 115/298 (38%), Gaps = 15/298 (5%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+T TY ALL G+ + ++F + + +P Y+ ++ A
Sbjct: 142 RTPFTYAALLQGLCGAGMVREAMAVFAGMWPDG-CAPDSHVYSIMVHGLCGAGRAGEAVA 200
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
+ PNV YN LI GY + +I++ M++ +P+ TY L+ G+
Sbjct: 201 LLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFC 260
Query: 308 HSGNLPRMEKIYELVKHHVDGKEFP-LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY- 365
SG + R +Y ++ P ++ +CS +E RL+ E
Sbjct: 261 KSGKVERAMVLY---SRMIEAGLAPNVVTYTTLIQGQCSE----GHLEHAFRLLHSMEAC 313
Query: 366 ----RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421
W ++LI K +EE ++ + + V V I ++ + + D
Sbjct: 314 GLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQV-IYTSMIDALCKSGKFDG 372
Query: 422 LANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
N +++ + G+ +Y S + + ++ E S+L +M + + F I+
Sbjct: 373 AHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTIL 430
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
Query: 176 ADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235
+D+ + AA ++ + TY L+ AY + G + L + A ++P Y + +
Sbjct: 60 SDMESLAARMPVRNLHTYTTLINAYCHAGDLPAAKRHLSSLLR-AGLAPDSHAYTSFVLG 118
Query: 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295
+ R L H F + + FTY L+ G A M + ++ M PD
Sbjct: 119 YCRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPD 178
Query: 296 TNTYLLLLRGYAHSG 310
++ Y +++ G +G
Sbjct: 179 SHVYSIMVHGLCGAG 193
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+ D A + P +VTY I + + ++ E+ ++ D + PN+ TYN LI GY
Sbjct: 445 MISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGY 504
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
+ + + M P+ +Y +LL
Sbjct: 505 ANLGLVSQAFSSLKNMIDNGCKPNDESYTVLL 536
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 67/161 (41%), Gaps = 13/161 (8%)
Query: 181 EAANKHLKTIGTYNALLGAYMYNGLSDK-CQ--------SLFRDLKKEANISPSIVTYNT 231
+ A+ ++ I T + A+MY+ L D C+ SL D+ E+ + + V +
Sbjct: 371 DGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMI-ESGVQANAVPFTI 429
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
LI R D + + + + P+V TY I Y E + M
Sbjct: 430 LIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHG 489
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
V P+ TY L++GYA NL + + + +K+ +D P
Sbjct: 490 VRPNLTTYNTLIKGYA---NLGLVSQAFSSLKNMIDNGCKP 527
>gi|413953408|gb|AFW86057.1| hypothetical protein ZEAMMB73_674343 [Zea mays]
Length = 596
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 133/314 (42%), Gaps = 32/314 (10%)
Query: 84 TVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNW 143
T A+R+E+ +D + F+ E G C+ R N RP L L +
Sbjct: 91 TPQAVREEVDGFLDSRKRAFKW--EVGVCVRRMRRNAL----------YRPSLKLSEVMA 138
Query: 144 RRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF---AEAANKHLKTIGTYNALLGAY 200
RR G T + + + + A F E + HL TY ALL +Y
Sbjct: 139 RR-----GMNPTVSDQAIRLDLIAKSRGIAAAEKYFLDLPETSKTHL----TYGALLNSY 189
Query: 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN 260
+++K +SL +K E N + + +++N+L++++ ++ + + + Q++K ++ P+
Sbjct: 190 CKELMTEKAESLMEKMK-ELNFAFTAMSFNSLMTMYTKVNQAEKVPSIIQDMKADDVLPD 248
Query: 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMK-AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
VFTYN + VE + + MK G V PD TY L Y +G + E
Sbjct: 249 VFTYNVWMRALAALKDIPGVERVIEEMKRDGRVAPDWTTYSNLASIYVEAGMFEKAEAAL 308
Query: 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI-EALMRLIPEKEYRPWLNVL-----L 373
+ ++ + + +I Y + + ++ +L R P +LN++ L
Sbjct: 309 KELEKRNTSNDIEAYQFLITLYGRTQNLVEVHRVWRSLKRDNPRMANMSYLNMIQVLANL 368
Query: 374 IRVYAKEDCLEEME 387
+ A E C +E E
Sbjct: 369 KDLSAAEACFKEWE 382
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 51/256 (19%), Positives = 102/256 (39%), Gaps = 27/256 (10%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
A+ L + TYN + A + + ++K++ ++P TY+ L S++ +
Sbjct: 242 ADDVLPDVFTYNVWMRALAALKDIPGVERVIEEMKRDGRVAPDWTTYSNLASIYVEAGMF 301
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK-AGPVMPDTNTYLL 301
+ EAA +E++ N S ++ Y +LI Y +V +++ +K P M + +YL
Sbjct: 302 EKAEAALKELEKRNTSNDIEAYQFLITLYGRTQNLVEVHRVWRSLKRDNPRMANM-SYLN 360
Query: 302 LLRGYAHSGNLPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI 360
+++ A+ +L E + E H+ + +K S D +
Sbjct: 361 MIQVLANLKDLSAAEACFKEWEARHIHPPK---------TNTKGSGADNTPGAD------ 405
Query: 361 PEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420
P+ P N + +E + + K +R+ ++ +Y +D
Sbjct: 406 PKSPSNPPNN---------QSGTKETGDETAEDLQPKHPKYDIRVANAMIKAYITEGMLD 456
Query: 421 KLANFVKRAESAGWRL 436
K KRA+ G RL
Sbjct: 457 KAVAMKKRAKMRGGRL 472
>gi|41393251|gb|AAS01974.1| putative chloroplastic RNA-binding protein, with alternative
splicing isoforms [Oryza sativa Japonica Group]
gi|108712189|gb|ABF99984.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 884
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 10/177 (5%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE--AANKHLKTIGT 192
RLAL++L G P+ Y+ I A R D A + F A++ L T
Sbjct: 193 RLALDML-------ASGVPLDNITYSTLITAARRCRQFDKAVEWFERMYASDGVLPDEVT 245
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y+A+L Y G+ ++ +LF D + + P V + L +FG D ++ F+E+
Sbjct: 246 YSAILDVYAQLGMKEEVLALF-DRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEM 304
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
++ + PN+F YN L+ G +++ M A V P+ T L + Y +
Sbjct: 305 REVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMTAEGVEPNARTLTALAKIYGRA 361
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 3/147 (2%)
Query: 174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
LA D+ A L I TY+ L+ A DK F + + P VTY+ ++
Sbjct: 194 LALDMLASGVP--LDNI-TYSTLITAARRCRQFDKAVEWFERMYASDGVLPDEVTYSAIL 250
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+ +L + + + A F + S P+ + L + A + ++ +++ M+ +
Sbjct: 251 DVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIK 310
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYE 320
P+ Y LL +G ++E
Sbjct: 311 PNIFVYNALLEALGKTGKPGLARNLFE 337
>gi|21618238|gb|AAM67288.1| unknown [Arabidopsis thaliana]
Length = 463
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 91/182 (50%), Gaps = 6/182 (3%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
L + TYN L+ Y D+ ++ R ++ EA I P + TYN+LIS + L+++ +
Sbjct: 40 LPDVITYNTLIKGYTRFIGIDEAYAVTRRMR-EAGIEPDVTTYNSLISGAAKNLMLNRVL 98
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI-YQMMKAGPVMPDTNTYLLLLRG 305
F E+ S LSP++++YN L++ Y G+ +I ++ + ++P +TY +LL
Sbjct: 99 QLFDEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDA 158
Query: 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY 365
SG+ + EL KH + L+ I C + R+ ++ +MR + + Y
Sbjct: 159 LCKSGH---TDNAIELFKHLKSRVKPELMTYNILINGLCK-SRRVGSVDWMMRELKKSGY 214
Query: 366 RP 367
P
Sbjct: 215 TP 216
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
+ P ++TYNTLI + R + +D A + ++++ + P+V TYN LI+G M +V
Sbjct: 38 GVLPDVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLMLNRV 97
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+++ M + PD +Y L+ Y G
Sbjct: 98 LQLFDEMLHSGLSPDMWSYNTLMSCYFKLG 127
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 92/216 (42%), Gaps = 22/216 (10%)
Query: 124 VELMKQLGSRPRLALEVLN----------------WRRRQ---AGYGTPMTKEEYTKGIK 164
+EL K L SR + L N W R+ +GY TP YT +K
Sbjct: 169 IELFKHLKSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGY-TP-NAVTYTTMLK 226
Query: 165 FAGRINNVDLAADLFAEAANKHLKTIGTYN-ALLGAYMYNGLSDKCQSLFRDLKKEANIS 223
+ ++ LF + + G N A++ A + G +++ +L + S
Sbjct: 227 MYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGRAEEAYECMHELVRSGTRS 286
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
IV+YNTL++++ + +D ++ +EI+ L P+ +T+ ++ G + G E+
Sbjct: 287 QDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLNIGNTGGAEKH 346
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ + P T L+ G +G++ R +++
Sbjct: 347 LACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLF 382
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Query: 170 NNVDLAADLFAEAANKHLKT-----IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
+ D A +LF KHLK+ + TYN L+ + + R+LKK + +P
Sbjct: 163 GHTDNAIELF-----KHLKSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKK-SGYTP 216
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
+ VTY T++ ++ + ++ F ++K + + F +++ + G+ EE Y
Sbjct: 217 NAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKT---GRAEEAY 273
Query: 285 QMM----KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+ M ++G D +Y LL Y GNL ++ + E ++
Sbjct: 274 ECMHELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIE 316
>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 139/344 (40%), Gaps = 22/344 (6%)
Query: 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
+DL + F + +K T+ + ++ G +K + L ++ + I P TYN
Sbjct: 186 IDLCLEFFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSGKG-IKPEAYTYN 244
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
T+I+ + + +E + +K + N TY LI + VE+++ M+
Sbjct: 245 TIINAYLKHRDFSGVEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRER 304
Query: 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYE-------LVKHHVDGKEFPLIRAMICAYSK 343
+ D + Y L+ GN+ R +++ L H G LI +
Sbjct: 305 GIESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYG---ALIDGV------ 355
Query: 344 CSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFEHKTSVT 401
C V + + E LM + K V LI Y ++ ++E I D E K
Sbjct: 356 CKVGE-MGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEASM-IYDVMEKKGFQA 413
Query: 402 TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL 461
V I S + R D+ ++ R G RL Y + + +Y + VEE + +
Sbjct: 414 DVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLF 473
Query: 462 KEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
EM + ++ + T+ +M YAY G+ ++ ++ M NG D
Sbjct: 474 VEMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANGMD 517
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
Q LFR + E + S V+Y LI V+ + V+ + F E+ + PN TYN +I
Sbjct: 436 QWLFRMM--EGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIY 493
Query: 270 GYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
Y GKV+E ++ MKA + PD+ TY L+ G + N+ +++
Sbjct: 494 AYCKQ---GKVKEARKLWANMKANGMDPDSYTYTSLIHGECIADNVDEAMRLF 543
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 13/177 (7%)
Query: 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALL 197
E W R G ++ YT I + NV+ A LF E ++K ++ TYN ++
Sbjct: 433 EAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMI 492
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL--VDHMEAAFQEIKDS 255
AY G + + L+ ++K + P TY +LI G + VD F E+
Sbjct: 493 YAYCKQGKVKEARKLWANMKANG-MDPDSYTYTSLIH--GECIADNVDEAMRLFSEMGLK 549
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHS 309
L N TY +I+G A GK +E +Y +K D Y L+ G HS
Sbjct: 550 GLDQNSVTYTVMISGLSKA---GKSDEAFGLYDEIKRKGYTIDNKVYTALI-GSMHS 602
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 70/150 (46%), Gaps = 5/150 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y L+ Y G ++ + LF ++ + + P+ +TYN +I + + V +
Sbjct: 452 SYTNLIDVYCKEGNVEEAKRLFVEMSSK-EVQPNAITYNVMIYAYCKQGKVKEARKLWAN 510
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K + + P+ +TY LI G A + ++ M + ++ TY +++ G + +G
Sbjct: 511 MKANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGK 570
Query: 312 LPRMEKIYELVK---HHVDGKEF-PLIRAM 337
+Y+ +K + +D K + LI +M
Sbjct: 571 SDEAFGLYDEIKRKGYTIDNKVYTALIGSM 600
>gi|255661150|gb|ACU25744.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
gi|255661152|gb|ACU25745.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRL 311
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/308 (19%), Positives = 122/308 (39%), Gaps = 36/308 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 11 TYSTLITHFGKEGLFDAALSWLQKMEQD-RVPGDLVLYSNLIELSRKLCDYSKAISIFSR 69
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S +P++ YN +I + A ++ + + MK V PDT +Y LL Y +
Sbjct: 70 LKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVTPDTASYSTLLTMYVENKK 129
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
I+ ++ + MI Y + + K+ MR + + N
Sbjct: 130 FLEALSIFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 189
Query: 372 LLIRVYAKEDCLEE------------MEKSI----------NDAFEHKTSVTTVRIMR-- 407
LL RVY + E +E+++ EH+ + ++ M+
Sbjct: 190 LL-RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNR 248
Query: 408 ----------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
I+S + + +D+ A ++ S+G + + LY + +V Y V
Sbjct: 249 GIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA 308
Query: 458 ESVLKEME 465
+ +L E++
Sbjct: 309 KRLLHELK 316
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 197 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG-IEPN 253
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + Y +I Y A + + +
Sbjct: 254 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLH 313
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P D ++L G R+E+ + + +D K+ + MI +
Sbjct: 314 ELKRPDNIPRDIAIHILAGAG--------RIEEATWVFRQAIDAGEVKDITVFERMIHLF 365
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTS 399
SK + ++ MR + Y P NV L++ Y K L E +K+ ND +
Sbjct: 366 SKYKKYGNVVEVFDKMRGLG---YFPDSNVIALVLNAYGK---LHEFDKA-NDVYMEMQE 418
Query: 400 VTTV 403
V V
Sbjct: 419 VGCV 422
>gi|281352621|gb|EFB28205.1| hypothetical protein PANDA_000195 [Ailuropoda melanoleuca]
Length = 1367
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 153/365 (41%), Gaps = 48/365 (13%)
Query: 179 FAEAANKHLKTIGT------YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
FA L+ +GT YNALL Y+ N ++ EANI P+ VTY L
Sbjct: 134 FAHRIWDKLQKLGTVYDVSHYNALLKVYLQNEYKFSPTDFLAKME-EANIQPNRVTYQRL 192
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I+ + + ++ +K +L ++ L+ G+ A E I +MK +
Sbjct: 193 IAAYCNMGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDIENAENILTVMKEAGI 252
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELV-KHHVDGKEFPLIRAMICAYSKCSVTDRIK 351
P +TYL LL YA G++ R+++ E V K + + L++ +I ++SK + +
Sbjct: 253 EPGPDTYLTLLNAYAEKGDIDRVKQTLEKVEKSDLYLMDRDLLQ-IIFSFSKAGYSQYVP 311
Query: 352 KIEALMRLIPEKEYRP-WLNVLLIRVYAK-ED--------CLEEMEKSIND----AFEHK 397
+I L ++ E+ Y P +N++L+ V K ED C E ++D +H
Sbjct: 312 EI--LEKITYERRYIPDAMNLILLLVTEKLEDTAFQILLACPVSREDGLSDFVGFFLQHC 369
Query: 398 TSVTT------------------VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439
++ T ++ + S N D +K + G+ +
Sbjct: 370 VTMNTPAEKLKDYCRKLKESQMHTSPLQFTLQSALLANKTDLAKALMKALKEEGFPVRIH 429
Query: 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
+ +V + ++ V+ + VLK M + ++T+ + Y + + R + VL
Sbjct: 430 YFWPLLVGHQKEKDVQGIIEVLKAMHEMGVSPDQETY--INYVFPSFDSVRSAHAVLQ-- 485
Query: 500 CKNGY 504
+NGY
Sbjct: 486 -ENGY 489
>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
Length = 632
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 91/226 (40%), Gaps = 8/226 (3%)
Query: 92 LLANVDDLDKVFRVLDEKG--SCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAG 149
L LD ++ +E G C+ N + ++K L EV +W R G
Sbjct: 344 FLGKAGRLDDGLKLFEEMGVSHCI----PNVVTYNTIIKALFESKSRVSEVFSWFERMKG 399
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI-GTYNALLGAYMYNGLSDK 208
G + Y+ I + N ++ A L E K Y +L+ A D
Sbjct: 400 SGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDL 459
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
LF++LK+ S S Y +I G+ +D F E+ +PNV+ YN L+
Sbjct: 460 ACELFQELKENCG-SSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALM 518
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+G A M + + M+ +PD N+Y ++L G A +G R
Sbjct: 519 SGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHR 564
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 7/197 (3%)
Query: 124 VELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE-A 182
+EL++Q G ++ E++ R TPM E ++ I+ G + A +F +
Sbjct: 133 LELVEQYGEMWKMIQEMV---RSPICVVTPM---ELSQVIRMLGNAKMIGKAITIFYQIK 186
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
A K T YN+++ ++ G +K L+ ++ E + P VTY+ LIS F +L
Sbjct: 187 ARKCQPTAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQ 246
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
D E+K++ + P Y +I+ + +++ M+ PD TY L
Sbjct: 247 DSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTEL 306
Query: 303 LRGYAHSGNLPRMEKIY 319
+RG +G + Y
Sbjct: 307 IRGLGKAGRIDEAYHFY 323
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 13/206 (6%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKC 209
G P Y I G+ DLA +LF E N + Y ++ G D
Sbjct: 436 GFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDA 495
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
+LF ++ K +P++ YN L+S R ++D +++++ P++ +YN ++
Sbjct: 496 INLFDEMSK-LGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILN 554
Query: 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH-HVDG 328
G + E+ MK + PD +Y +L +H+G E+ EL+K + G
Sbjct: 555 GLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMF---EEAAELMKEMNALG 611
Query: 329 KEFPLIRAMICAYSKCSVTDRIKKIE 354
E+ LI YS S+ + I K++
Sbjct: 612 FEYDLI-----TYS--SILEAIGKVD 630
>gi|18422700|ref|NP_568665.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635755|sp|Q56XR6.2|PP421_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46680
gi|332008030|gb|AED95413.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 468
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 91/182 (50%), Gaps = 6/182 (3%)
Query: 187 LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246
L + TYN L+ Y D+ ++ R ++ EA I P + TYN+LIS + L+++ +
Sbjct: 45 LPDVITYNTLIKGYTRFIGIDEAYAVTRRMR-EAGIEPDVTTYNSLISGAAKNLMLNRVL 103
Query: 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI-YQMMKAGPVMPDTNTYLLLLRG 305
F E+ S LSP++++YN L++ Y G+ +I ++ + ++P +TY +LL
Sbjct: 104 QLFDEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDA 163
Query: 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY 365
SG+ + EL KH + L+ I C + R+ ++ +MR + + Y
Sbjct: 164 LCKSGH---TDNAIELFKHLKSRVKPELMTYNILINGLCK-SRRVGSVDWMMRELKKSGY 219
Query: 366 RP 367
P
Sbjct: 220 TP 221
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
+ P ++TYNTLI + R + +D A + ++++ + P+V TYN LI+G M +V
Sbjct: 43 GVLPDVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLMLNRV 102
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+++ M + PD +Y L+ Y G
Sbjct: 103 LQLFDEMLHSGLSPDMWSYNTLMSCYFKLG 132
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 92/216 (42%), Gaps = 22/216 (10%)
Query: 124 VELMKQLGSRPRLALEVLN----------------WRRRQ---AGYGTPMTKEEYTKGIK 164
+EL K L SR + L N W R+ +GY TP YT +K
Sbjct: 174 IELFKHLKSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKKSGY-TP-NAVTYTTMLK 231
Query: 165 FAGRINNVDLAADLFAEAANKHLKTIGTYN-ALLGAYMYNGLSDKCQSLFRDLKKEANIS 223
+ ++ LF + + G N A++ A + G +++ +L + S
Sbjct: 232 MYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGRAEEAYECMHELVRSGTRS 291
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
IV+YNTL++++ + +D ++ +EI+ L P+ +T+ ++ G + G E+
Sbjct: 292 QDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHTIIVNGLLNIGNTGGAEKH 351
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ + P T L+ G +G++ R +++
Sbjct: 352 LACIGEMGMQPSVVTCNCLIDGLCKAGHVDRAMRLF 387
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Query: 170 NNVDLAADLFAEAANKHLKT-----IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
+ D A +LF KHLK+ + TYN L+ + + R+LKK + +P
Sbjct: 168 GHTDNAIELF-----KHLKSRVKPELMTYNILINGLCKSRRVGSVDWMMRELKK-SGYTP 221
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
+ VTY T++ ++ + ++ F ++K + + F +++ + G+ EE Y
Sbjct: 222 NAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKT---GRAEEAY 278
Query: 285 QMM----KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+ M ++G D +Y LL Y GNL ++ + E ++
Sbjct: 279 ECMHELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIE 321
>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Brachypodium distachyon]
Length = 1102
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ +G ++ SLF D++K + I+P++ TYN+LI G+ ++E
Sbjct: 988 TYNLLIHGLGRSGRLEEAVSLFNDMEK-SGIAPNLYTYNSLILYLGKEGKAAEAGKMYEE 1046
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
+ + PNVFTYN LI GY + Y M G P+++TY+ L
Sbjct: 1047 LLKNGWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPNSSTYMQL 1097
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 5/151 (3%)
Query: 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
G + AG N + +LF ++ + I +Y L+GA G + S FR L E
Sbjct: 925 GYRLAG---NTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLT-EL 980
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
+ P ++TYN LI GR ++ + F +++ S ++PN++TYN LI +
Sbjct: 981 GLEPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEA 1040
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++Y+ + P+ TY L+ GY+ SG+
Sbjct: 1041 GKMYEELLKNGWKPNVFTYNALIGGYSVSGS 1071
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 7/199 (3%)
Query: 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQ 210
TP T G+ G+I + A DLF E + K YN LL Y G ++K
Sbjct: 880 TPCTYGPLLDGLLKDGKIED---AEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVC 936
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
LF+++ + I+P I +Y LI ++ + F+++ + L P++ TYN LI G
Sbjct: 937 ELFQNMVDQG-INPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHG 995
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKHHVDGK 329
+ + ++ M+ + P+ TY L+ G K+Y EL+K+
Sbjct: 996 LGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPN 1055
Query: 330 EFPLIRAMICAYSKCSVTD 348
F A+I YS TD
Sbjct: 1056 VFTY-NALIGGYSVSGSTD 1073
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 7/160 (4%)
Query: 166 AGRINNVDLAADLF--AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANIS 223
AGR+++ A D+F +A+++ + TY LL NG S ++ +K + +
Sbjct: 299 AGRVSD---AKDVFWKMKASDQKPDRV-TYITLLDKCGDNGDSRSVIEIWNAMKADG-YN 353
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
++V Y ++ ++ VD F ++K + P ++YN LI+G++ A E+
Sbjct: 354 DNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFLKADRLNHALEL 413
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+ M P+ TY+L + Y SG + K YEL+K
Sbjct: 414 FNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMK 453
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 144/339 (42%), Gaps = 38/339 (11%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT IK + +N D A +F+E + + + N+L+ G ++ +F +LK
Sbjct: 499 YTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELK 558
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E N+ P+ TYNTL++ GR V + +E+ ++ PN+ TYN ++
Sbjct: 559 -EMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVLD---CLCKN 614
Query: 278 GKVE----EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333
G+V +Y M G MPD ++Y L G L +I+ +K V ++
Sbjct: 615 GEVNYALGMLYNMTMKG-CMPDLSSYNTALHGLVKEDRLTEAFRIFCQMKK-VLAPDYTT 672
Query: 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEY---------RPWLNVLLIRVYAKEDCLE 384
+ ++ ++ K + + EAL L KEY R + L+ + +
Sbjct: 673 LCTILPSFVKNGLMN-----EALHTL---KEYILQPGSKADRSSFHSLMEGILKRAG--- 721
Query: 385 EMEKSINDAFEHKTSVTTVRIMRCIVSSYFR--CNAVDKLA--NFVKRAESAGWRLCRSL 440
MEKSI F +++ + + +S R C + L VK+ ES G L
Sbjct: 722 -MEKSIE--FAENIALSRILLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGS 778
Query: 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
Y++ + + ++ E + EM+ D + T+ ++
Sbjct: 779 YNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLI 817
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 98/249 (39%), Gaps = 42/249 (16%)
Query: 181 EAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240
E+ LKT G+YNAL+ + L D + LF ++K+ P TYN ++ G+ +
Sbjct: 768 ESLGVSLKT-GSYNALICGLVDENLIDVAEGLFSEMKR-LGCDPDEFTYNLILDAMGKSM 825
Query: 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA----------G 290
++ M +E+ TYN +I+G + + M + ++Y + + G
Sbjct: 826 RIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYG 885
Query: 291 PVM-------------------------PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325
P++ P+ Y +LL GY +GN EK+ EL ++
Sbjct: 886 PLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGN---TEKVCELFQNM 942
Query: 326 VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCL 383
VD P I++ R+ + R + E P L LLI + L
Sbjct: 943 VDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRL 1002
Query: 384 EEMEKSIND 392
EE ND
Sbjct: 1003 EEAVSLFND 1011
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 119/267 (44%), Gaps = 19/267 (7%)
Query: 60 PTLVRLLSETLTYP-DARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHS 118
PT R S L P D R + Q V + A+ + ++F+ + ++ + S
Sbjct: 55 PTSRRAGSNKLAPPCDEREGRPGAQNVVHMLRSAAADPAEALQLFKSVAQQPRIVHTTES 114
Query: 119 NGYAFVELMKQLGSRPRLALEVLNWRRRQ---AGYGTPMTKEEYTKGIKFAGRINNVDLA 175
Y +ELM+ G R R +V + +RQ A GT +T + + G + + +A
Sbjct: 115 CNY-MLELMRAHG-RVRDMAQVFDLMQRQIVKANVGTFLT---IFRSLGMEGGLRSAPVA 169
Query: 176 ADLFAEAA---NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
+ EA N + TYN L+ + +G + +++ + + I PS+ TY+ L
Sbjct: 170 LPMMKEAGIVLNSY-----TYNGLIYFLVKSGYDREAMEVYKVMATDG-IVPSVRTYSVL 223
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
+ FG+ V+ + +E++D + PNV++Y I A + + +I Q M+
Sbjct: 224 MLAFGK-RDVETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGC 282
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIY 319
PD T +L++ +G + + ++
Sbjct: 283 KPDVVTNTVLIQILCDAGRVSDAKDVF 309
>gi|357436523|ref|XP_003588537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477585|gb|AES58788.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 653
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 3/159 (1%)
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
L KE I P +VTY+T+++ + + D + F + S + P+V Y+ L+ GY+ +
Sbjct: 362 LMKEFQIQPDVVTYSTIMNAWSQAGFQDKCKQIFDNMLQSGVKPDVHAYSILVKGYVRSM 421
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIR 335
K EE+ M V P+ T+ ++ G+ SG + KI++ +
Sbjct: 422 ETEKAEELLGDMIESGVRPNVVTFTNVISGWGSSGRMDNAIKIFDKMCELGVSPNLRTFE 481
Query: 336 AMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI 374
A+I Y+K D+ K E +++L+ E P + L+
Sbjct: 482 ALIWGYAK---ADQPWKSEEILQLMEEFHVHPKKSTFLL 517
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 74/140 (52%), Gaps = 2/140 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ ++ A+ G DKC+ +F ++ ++ + P + Y+ L+ + R + + E +
Sbjct: 374 TYSTIMNAWSQAGFQDKCKQIFDNM-LQSGVKPDVHAYSILVKGYVRSMETEKAEELLGD 432
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +S + PNV T+ +I+G+ ++ +I+ M V P+ T+ L+ GYA +
Sbjct: 433 MIESGVRPNVVTFTNVISGWGSSGRMDNAIKIFDKMCELGVSPNLRTFEALIWGYAKADQ 492
Query: 312 LPRMEKIYELVKH-HVDGKE 330
+ E+I +L++ HV K+
Sbjct: 493 PWKSEEILQLMEEFHVHPKK 512
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 68/121 (56%), Gaps = 1/121 (0%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ Y+ L+ Y+ + ++K + L D+ E+ + P++VT+ +IS +G +D+ F
Sbjct: 407 VHAYSILVKGYVRSMETEKAEELLGDMI-ESGVRPNVVTFTNVISGWGSSGRMDNAIKIF 465
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
++ + +SPN+ T+ LI GY A K EEI Q+M+ V P +T+LL+ + + +
Sbjct: 466 DKMCELGVSPNLRTFEALIWGYAKADQPWKSEEILQLMEEFHVHPKKSTFLLVSKAWRFA 525
Query: 310 G 310
G
Sbjct: 526 G 526
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/340 (20%), Positives = 136/340 (40%), Gaps = 33/340 (9%)
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
LL + G +F+ L +E + PS++TY +L+ + + ++++
Sbjct: 80 LLNILIVCGKPQAANVIFKKLIEEGH-QPSLITYTSLLHALTMQKCFKSIHSLVSQVEEK 138
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315
+ N YN +I + + ++ Q MK P T TY L++GY G
Sbjct: 139 QMKTNSIFYNAVINAFAESGNMEDAKKTVQKMKESGFRPSTGTYSNLIKGYGIVGKSGEA 198
Query: 316 EKIYELVKHHVDGKEFP-------LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
K+ +L+ DG P LI+A+ + + + + K+ A ++P+
Sbjct: 199 MKLLDLM--LTDGNSKPDLQTYNMLIKALCQSGNMSEAWNIVCKMPA-SGMLPDSVT--- 252
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
N + I Y E E I + + K R IV+ Y++ + + FV R
Sbjct: 253 FNTMAIG-YVLNSETAEAEAMILE-MQRKGLEPNERTFTVIVNGYYKEGQIKEALQFVYR 310
Query: 429 AESAGWR---LCRSLYHSKMVMYASQRRVEEMES--------------VLKEMENYKIDC 471
+ G++ L ++ + V + V+E + VL+ M+ ++I
Sbjct: 311 IKDLGFKPNLLVFNVLINGFVDRMDRDGVDEFSNTFAQEGKNQVTTPLVLRLMKEFQIQP 370
Query: 472 SKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511
T+ + A++ G + K Q+ M ++G V+A+
Sbjct: 371 DVVTYSTIMNAWSQAGFQDKCKQIFDNMLQSGVKPDVHAY 410
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 64/333 (19%), Positives = 127/333 (38%), Gaps = 29/333 (8%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+ GTY+ L+ Y G S + L + + N P + TYN LI L +M A
Sbjct: 178 STGTYSNLIKGYGIVGKSGEAMKLLDLMLTDGNSKPDLQTYNMLIKA---LCQSGNMSEA 234
Query: 249 FQ---EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ ++ S + P+ T+N + GY+ + E + M+ + P+ T+ +++ G
Sbjct: 235 WNIVCKMPASGMLPDSVTFNTMAIGYVLNSETAEAEAMILEMQRKGLEPNERTFTVIVNG 294
Query: 306 YAHSGNL----------------PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR 349
Y G + P + L+ VD + R + +S +
Sbjct: 295 YYKEGQIKEALQFVYRIKDLGFKPNLLVFNVLINGFVD----RMDRDGVDEFSNTFAQEG 350
Query: 350 IKKIEA--LMRLIPEKEYRPWLNVLLIRVYA-KEDCLEEMEKSINDAFEHKTSVTTVRIM 406
++ ++RL+ E + +P + + A + ++ K I D V
Sbjct: 351 KNQVTTPLVLRLMKEFQIQPDVVTYSTIMNAWSQAGFQDKCKQIFDNMLQSGVKPDVHAY 410
Query: 407 RCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466
+V Y R +K + +G R + + + + S R++ + +M
Sbjct: 411 SILVKGYVRSMETEKAEELLGDMIESGVRPNVVTFTNVISGWGSSGRMDNAIKIFDKMCE 470
Query: 467 YKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499
+ + +TF + + YA Q K ++L LM
Sbjct: 471 LGVSPNLRTFEALIWGYAKADQPWKSEEILQLM 503
>gi|255661198|gb|ACU25768.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRK-LGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ ++ NV TYN ++ Y K + Q M++ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P+ TY ++ + G L R ++E ++ + L + MI AY + + K++
Sbjct: 252 PNAITYSTIISIWGKVGKLDRAAILFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRL 311
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 109/233 (46%), Gaps = 30/233 (12%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 197 AELFGEAI--HLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG-IEPN 253
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D F++++ S + + Y +I Y A + + +
Sbjct: 254 AITYSTIISIWGKVGKLDRAAILFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHAKRLLH 313
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P DT ++L A +G R+E+ + + +D K+ + MI +
Sbjct: 314 ELKTPDNIPRDTAIHIL-----ARAG---RIEEATWVFRQAIDAGEVKDITVFERMIDLF 365
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAF 394
SK I ++ MR + E ++ L++ Y K L E EK+ ND +
Sbjct: 366 SKYKKYSNIVEVFDKMRGL-EYFSDSYVIALVLNAYGK---LHEFEKA-NDVY 413
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/308 (19%), Positives = 123/308 (39%), Gaps = 36/308 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 11 TYSTLITYFGKEGLFDDALSWLQKMEQD-RVRGDLVLYSNLIELSRKLCDYSKAISIFSR 69
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S + P++ YN +I + A ++ + + M+ VMPDT +Y LL Y +
Sbjct: 70 LKRSGIMPDLVVYNSMINVFGKAKLFREARSLISEMRTAGVMPDTVSYTALLTMYVENKK 129
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 130 FLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWSMRKLGIEPNVVSYNT 189
Query: 372 LLIRVYAKEDCLEE------------MEKSI----------NDAFEHKTSVTTVRIMR-- 407
LL RVY + E +E+++ EH+ + ++ M+
Sbjct: 190 LL-RVYGDAELFGEAIHLFRLMQRKDIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSR 248
Query: 408 ----------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
I+S + + +D+ A ++ S+G + + LY + +V Y V
Sbjct: 249 GIEPNAITYSTIISIWGKVGKLDRAAILFEKLRSSGIEIDQVLYQTMIVAYERAGLVSHA 308
Query: 458 ESVLKEME 465
+ +L E++
Sbjct: 309 KRLLHELK 316
>gi|356557981|ref|XP_003547288.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 706
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 100/432 (23%), Positives = 167/432 (38%), Gaps = 56/432 (12%)
Query: 7 LSDAAQTELLLQ--RLQRHSSKPKTLPPLSVFTLTKSP-------------NHSFTR--- 48
S + Q + LLQ +L ++K L S++ KSP + S T+
Sbjct: 64 FSSSHQPKTLLQDAKLDDPNAKSSPLSKTSIWVNPKSPRAKHLWKNSYHARSSSLTKLAK 123
Query: 49 --DLCAPATHTVFPTLVRLLSETLTYPDARVRKD--------------LTQTVSALRDEL 92
D C P V ++++L +++ PDA + Q V ++R +
Sbjct: 124 SLDSCNPTQEHV-SEILKVLGDSVLEPDAVFILNSMVNPYTALLAVEYFKQKVKSVRHVI 182
Query: 93 LANV--------DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWR 144
L NV D + ++ DE L R + M S L + + W
Sbjct: 183 LYNVTLKLFRKVKDFEGAEKLFDEM---LHRGVNPNLITFSTMISCASVCSLPHKAVKWF 239
Query: 145 RRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF--AEAANKHLKTIGTYNALLGAYMY 202
+G + I R N D+A L+ A+A H+ T ++ L+ Y
Sbjct: 240 EMMPSFGCEPDNNVCSSMIYAYTRTGNTDMALRLYDRAKAGKWHVDT-AVFSGLIKMYGV 298
Query: 203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF 262
+G C +++ D+K P++ TYN L+ GR +A + E+ + LSPN
Sbjct: 299 SGNYVGCLNVYNDMKV-LGAKPNLTTYNALLYAMGRAKRARDAKAIYGEMISNGLSPNWP 357
Query: 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
TY L+ Y A +Y+ MK D Y +L A+ G + KI+E +
Sbjct: 358 TYAALLQAYCRARFNRDALNVYKEMKEKGKDLDILLYNMLFDMCANVGCVDEAVKIFEHM 417
Query: 323 KHHVDGKEFPLIRA-MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAK 379
K A +I YS +I ++EA+ + E + P + VL L+ Y K
Sbjct: 418 KSSGTCPPDSFTYASLINMYSSIG---KILEMEAMFNEMMESGFEPNIIVLTSLVHCYGK 474
Query: 380 EDCLEEMEKSIN 391
+++ K N
Sbjct: 475 AKRTDDVVKIFN 486
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L G D+ +F +K P TY +LI+++ + + MEA F E+
Sbjct: 394 YNMLFDMCANVGCVDEAVKIFEHMKSSGTCPPDSFTYASLINMYSSIGKILEMEAMFNEM 453
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY-QMMKAGPVMPD 295
+S PN+ L+ Y A V +I+ Q+M G + PD
Sbjct: 454 MESGFEPNIIVLTSLVHCYGKAKRTDDVVKIFNQLMDLG-ISPD 496
>gi|357450749|ref|XP_003595651.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484699|gb|AES65902.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 785
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 7/145 (4%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ YN++L AY + D +S+ + + KE+N + + TYN +I+++G ++ +
Sbjct: 648 SLEAYNSMLDAYGKDSQMDAFRSVLK-MMKESNCASDLYTYNIVINIYGEQGWIEEVSDV 706
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
E+ + L P++ +YN LI Y A M + E+ + M+ + PD TY L+
Sbjct: 707 LAELNECGLRPDLCSYNTLIKAYGIAGMVEEAVELIKEMRKNGIEPDQTTYTNLINA--- 763
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPL 333
L R +K E VK + K+ L
Sbjct: 764 ---LKRNDKFLEAVKWSLWMKQIKL 785
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 180 AEAANKHLKTIGT-----YNALLGAYMYNGLSDKCQSLFRDLKKEA---NISPSIVTYNT 231
AE H+K Y++++ Y GL K +S+ ++KE N+ +V N
Sbjct: 139 AEFVMSHMKRFSVVCESAYSSMITIYTRLGLYAKAESVVELMEKEVMVLNVENWLVILN- 197
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L G+++ + + A +E + N+ YN +I GY A E ++ + G
Sbjct: 198 LYCQQGKMVEAERVLAIMEE-EAGFCVENIVVYNTMITGYGKASNMDGAESVFLRL-GGR 255
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+ PD +Y ++ G+ +GN + YE +K
Sbjct: 256 IEPDETSYRSMIEGWGRAGNYEKARWYYEELK 287
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/291 (18%), Positives = 125/291 (42%), Gaps = 17/291 (5%)
Query: 193 YNALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y+ ++ Y+ G L D C S+ D+ K +I P + ++ ++ R +VD + + +
Sbjct: 477 YSIVVRMYVRAGSLEDAC-SVLDDIDKRPDIVPDVFLLRDMLRIYQRRNMVDKLAQVYYK 535
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
I L+ + YN +I A ++ ++ M MP+T TY ++L + +
Sbjct: 536 ILKDRLNWDQEFYNCVINCCARALPIDELSRLFDEMLQRGFMPNTFTYNVMLNVFGKAKL 595
Query: 312 LPRMEKIYELVKHH--VDGKEFPLIRAMICAYSKC----SVTDRIKKIEALMRLIPEKEY 365
++ ++Y + K VD + I I +Y K +++ ++K++ + + Y
Sbjct: 596 FKKVRRLYFMAKKQGLVDVITYNTI---IDSYGKKKDFRNMSRTVRKMQFDGFSVSLEAY 652
Query: 366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANF 425
L+ Y K+ ++ +S+ + + + +++ Y ++++++
Sbjct: 653 NSMLD-----AYGKDSQMDAF-RSVLKMMKESNCASDLYTYNIVINIYGEQGWIEEVSDV 706
Query: 426 VKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476
+ G R Y++ + Y VEE ++KEM I+ + T+
Sbjct: 707 LAELNECGLRPDLCSYNTLIKAYGIAGMVEEAVELIKEMRKNGIEPDQTTY 757
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 6/149 (4%)
Query: 210 QSLFRDLKKEANISPSIV--TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
++L R + ++ P + +NTLI + LV F+ + D N++PNV T+ L
Sbjct: 67 ENLLRKIILASDSEPQLTYQIFNTLIYASSKRGLVKLTSKWFRMMLDCNVTPNVATFGML 126
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV- 326
+ Y W + E + MK V+ ++ Y ++ Y G + E + EL++ V
Sbjct: 127 MRLYQKNWNVEEAEFVMSHMKRFSVVCES-AYSSMITIYTRLGLYAKAESVVELMEKEVM 185
Query: 327 --DGKEFPLIRAMICAYSKCSVTDRIKKI 353
+ + + +I + C K +R+ I
Sbjct: 186 VLNVENWLVILNLYCQQGKMVEAERVLAI 214
>gi|242057231|ref|XP_002457761.1| hypothetical protein SORBIDRAFT_03g013016 [Sorghum bicolor]
gi|241929736|gb|EES02881.1| hypothetical protein SORBIDRAFT_03g013016 [Sorghum bicolor]
Length = 267
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 20/226 (8%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNA 195
ALE+ R+Q Y P + + Y + + G+ AA LF ++ L+ T Y A
Sbjct: 57 ALEIFELLRKQHWY-EPRS-QTYARLLMMLGKCRQPGPAAALFKAMLSERLRPTADVYTA 114
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+GAY Y+G D+ + +K A+ P T+++ D + A E+
Sbjct: 115 LVGAYGYSGFLDEALAAVEQMKGAADCKPDGYTFSS--------RRFDLIPAVLDEMSYL 166
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVE-EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ N +N +I GY A M+ ++E + M+++G +PD T ++ Y + G
Sbjct: 167 GIECNSVIHNAIIDGYGKAAMFEEMEGALSAMLESGSNVPDIYTMNSVIGAYGNHGRTDE 226
Query: 315 MEKIY---ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357
MEK Y +L+ D K F I +Y K + D++ I +L+
Sbjct: 227 MEKSYSEFQLMGVEPDTKTFN-----IKSYGKAGMYDKMMSIFSLV 267
>gi|413917008|gb|AFW56940.1| plastid transcriptionally active 12-like protein [Zea mays]
Length = 600
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 2/155 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
Y+ IK G+ + A +F E + ++ T +YN LL A+ +GL ++ ++FR ++
Sbjct: 318 YSLLIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVEEANTVFRAMR 377
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+ + P + +Y T++ + ++ E F+ IK+ L PNV Y L+ GY
Sbjct: 378 RH-RVEPDLCSYTTMVLAYVNASEMNGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNL 436
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
KV +Y+ M+ V P+ Y ++ + +
Sbjct: 437 EKVMRVYERMRIQGVEPNQTIYTTIMDAQGRNSDF 471
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 92/187 (49%), Gaps = 7/187 (3%)
Query: 175 AADLFAEAANKH--LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
A LFA+ + + L T+ T+N+L+ + + +++ +++ A + P +V+Y+ L
Sbjct: 267 ARKLFAQMSERGIPLSTV-TFNSLMS---FETEYKEVSNIYDQMQR-AGLKPDVVSYSLL 321
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
I +G+ + A F+E+ D+ + P +YN L+ + + + + +++ M+ V
Sbjct: 322 IKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVEEANTVFRAMRRHRV 381
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352
PD +Y ++ Y ++ + EK + +K + ++ YSK + +++ +
Sbjct: 382 EPDLCSYTTMVLAYVNASEMNGAEKFFRRIKEDGLKPNVVVYGTLMKGYSKLNNLEKVMR 441
Query: 353 IEALMRL 359
+ MR+
Sbjct: 442 VYERMRI 448
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 37/203 (18%), Positives = 84/203 (41%), Gaps = 24/203 (11%)
Query: 139 EVLNWRR-----RQAGYGTPMTKEEYTKG------------IKFAGRINNVDLAADLFAE 181
E +NWRR Q G P+ K + + I+F ++ ++ +++
Sbjct: 71 EQMNWRRMMREIEQEGSAVPILKTQRNRKEPLPRDVILGTLIRFK-QLKKWNIVSEILEW 129
Query: 182 AANKHLKTIGTYNALLGAYMYNGLSD--KCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
+H + L+ Y L D + + + + + K+ PS+++ L+ +GR
Sbjct: 130 LRTQHWWDFSEMDFLMLVTAYGKLGDFSRAERVLKYMNKKG-YQPSVISQTGLMEAYGRG 188
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM---KAGPVMPDT 296
EA F+ ++ S P+ TY ++ + + + E I++ + K PD
Sbjct: 189 KQYRKAEAVFRRMQTSGPQPSPVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQ 248
Query: 297 NTYLLLLRGYAHSGNLPRMEKIY 319
+ +++ Y +G+ + K++
Sbjct: 249 KMFHMMIYMYKKAGDYAQARKLF 271
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 48/260 (18%), Positives = 98/260 (37%), Gaps = 8/260 (3%)
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
L++ +G+L E + + P+V + L+ Y + K E +++ M+
Sbjct: 146 LVTAYGKLGDFSRAERVLKYMNKKGYQPSVISQTGLMEAYGRGKQYRKAEAVFRRMQTSG 205
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTD 348
P TY ++L+ E I+E + + P + MI Y K
Sbjct: 206 PQPSPVTYQIILKSLVEGDKYKEAEAIFEDLLNEKRTSFKPDQKMFHMMIYMYKKAGDYA 265
Query: 349 RIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC 408
+ +K+ A M + P V + + E +E+ +I D + V
Sbjct: 266 QARKLFAQM----SERGIPLSTVTFNSLMSFETEYKEV-SNIYDQMQRAGLKPDVVSYSL 320
Query: 409 IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK 468
++ +Y + ++ + AG R R Y+ + +A VEE +V + M ++
Sbjct: 321 LIKAYGKARREEEALAVFEEMLDAGVRPTRKSYNILLDAFAISGLVEEANTVFRAMRRHR 380
Query: 469 IDCSKKTFWIMYYAYATCGQ 488
++ ++ M AY +
Sbjct: 381 VEPDLCSYTTMVLAYVNASE 400
>gi|355699843|gb|AES01256.1| leucine-rich PPR-motif containing [Mustela putorius furo]
Length = 1252
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 103/214 (48%), Gaps = 22/214 (10%)
Query: 179 FAEAANKHLKTIGT------YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
FA L+ +GT YNALL Y+ N ++ EANI P+ VTY L
Sbjct: 4 FAHRIWDKLQKLGTVYDVSHYNALLKVYLQNEYKFSPTDFLAKME-EANIQPNRVTYQRL 62
Query: 233 ISVFGRLLLVDHMEAA-----FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
I+ + V +E A F + KD ++ VF+ L+ G+ A E I+ +M
Sbjct: 63 IAAYCN---VGDIEGASKILGFMKTKDLPVTEAVFS--ALVTGHARAGDIENAENIFSVM 117
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV-KHHVDGKEFPLIRAMICAYSKCSV 346
K + P +TYL LL YA G++ +++ E V K + + L++ +I ++SK
Sbjct: 118 KEAGIEPGPDTYLALLNAYAEKGDIDHVKQTLEKVEKSDLYLMDRDLLQ-IIFSFSKAGY 176
Query: 347 TDRIKKIEALMRLIPEKEYRP-WLNVLLIRVYAK 379
+ + +I L ++ E+ Y P +N++L+ V K
Sbjct: 177 SQHVPEI--LEKITYERRYIPDAMNLILLLVTEK 208
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 11/188 (5%)
Query: 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDL--AADLFAEAANKHLKTIG-TY 193
A E+LN R + YT GI G N + A +L E ++ LK Y
Sbjct: 439 AFELLNEMRNSG-----ILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMY 493
Query: 194 NALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
L+ + G +S C+SL ++ K AN+ P + YN+LI + ++ E + ++
Sbjct: 494 APLIIGHSKEGHISLACESL-ENMTK-ANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQV 551
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ L P+ FTY+ LI GY K +++ Q M + P+ +TY LL GY S +
Sbjct: 552 QKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDH 611
Query: 313 PRMEKIYE 320
++ I +
Sbjct: 612 EKVSSILQ 619
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 124/549 (22%), Positives = 206/549 (37%), Gaps = 88/549 (16%)
Query: 25 SKPKTLPPLSVFTLTKSPNHSFTR---DLCAPATHTVFPTLVRLLSE-TLTYP------- 73
S+P+ PP + +F R LCA A+H FP LL + L +P
Sbjct: 106 SRPRIAPPSA---------DAFARLAASLCA-ASH--FPQANGLLHQMILAHPHPPLVLA 153
Query: 74 ---------DARVRKDLTQTVSALRDELL------ANVDDLDKVFRVLDEKGSCLFRRHS 118
DAR +A+ D L+ +V +V ++ + G RR
Sbjct: 154 SIQRAIQDSDARSPSPSPSHSTAVLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCC 213
Query: 119 NGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADL 178
NG L+K L + L V + G G P Y+ ++ + + D A +
Sbjct: 214 NG-----LLKDLLRADAMEL-VWKLKGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKV 267
Query: 179 FAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237
F E + TYN ++ +G ++ F++ + +SP TY L++
Sbjct: 268 FEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFG-FKEEMVDYGLSPDAFTYGALMNGLC 326
Query: 238 RLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN 297
+ + +A E+ S L PNV Y L+ G+M + +I M + V P+
Sbjct: 327 KGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKI 386
Query: 298 TYLLLLRGYAHSGNLPRMEKIY-ELVK--HHVDGKEF-PLIRAMICAYSKCSVTDRIKKI 353
Y L+RG G L R K+ E++K H D + PL++ Y K + + ++
Sbjct: 387 MYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEM 446
Query: 354 EALMRLIPEKEYRPWLNVLLIRVYAKE--DCLEEM---------------------EKSI 390
L Y +N L +KE + LEEM E I
Sbjct: 447 RNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHI 506
Query: 391 NDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----------GWRLCRSL 440
+ A E ++T ++ F N++ K + V R E A G
Sbjct: 507 SLACESLENMTKANVL----PDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFT 562
Query: 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500
Y + Y R +E+ + +L++M N + + T+ + Y KV+ +L M
Sbjct: 563 YSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSML 622
Query: 501 KNGYDVPVN 509
+G D P N
Sbjct: 623 GSG-DKPDN 630
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN+L+ G ++ + + ++K + P TY+ LI + + ++ + Q++
Sbjct: 528 YNSLIKGLSTVGRIEEAEEYYAQVQKRG-LVPDEFTYSGLIHGYCKTRNLEKADQLLQQM 586
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+S L PN TY L+ GY + KV I Q M PD + Y +++R + S N+
Sbjct: 587 LNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENM 646
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 10/172 (5%)
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
+ P + Y++LIS ++ ++ E+ L P + YN LI G+ + +
Sbjct: 660 GLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRA 719
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340
++ + A ++P+ TY L+ G +G++ ++L K +D P
Sbjct: 720 RNVFDSILAKGLLPNCVTYTALIDGNCKNGDI---TDAFDLYKDMLDRGIAPDAFVYNVL 776
Query: 341 YSKCSVTDRIKKIEALMRLIPEKEYRPWLNV----LLIRVYAKEDCLEEMEK 388
+ CS +E + L E R + +V L+R + K L+E EK
Sbjct: 777 ATGCS---DAADLEQALFLTEEMFNRGYAHVSLFSTLVRGFCKRGRLQETEK 825
>gi|255661162|gb|ACU25750.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRL 311
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 108/244 (44%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 197 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG-IEPN 253
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + Y +I Y A + + +
Sbjct: 254 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLH 313
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P D ++L G R E+ + + +D K+ + MI +
Sbjct: 314 ELKRPDNIPRDIAIHILAGAG--------RXEEATWVFRQAIDAGEVKDITVFERMIHLF 365
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTS 399
SK + ++ MR + Y P NV L++ Y K L E +K+ ND +
Sbjct: 366 SKYKKYGNVVEVFDKMRGLG---YFPDSNVIALVLNAYGK---LHEFDKA-NDVYMEMQE 418
Query: 400 VTTV 403
V V
Sbjct: 419 VGCV 422
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 116/269 (43%), Gaps = 25/269 (9%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P +V YN +I+VFG+ L + E++ + ++PN +Y+ L
Sbjct: 62 KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + ++ M+ + D T +++ Y G +K++ ++
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAK---- 379
++ Y + + L RL+ K NV+ ++ +Y K
Sbjct: 181 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMMMIYGKTLEH 235
Query: 380 ---EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL 436
+ ++EM+ N E S+T I+S + + +D+ A ++ S+G +
Sbjct: 236 EKANNLIQEMQ---NRGIE-PNSIT----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDI 287
Query: 437 CRSLYHSKMVMYASQRRVEEMESVLKEME 465
+ LY + +V Y V + +L E++
Sbjct: 288 DQVLYQTMIVAYERAGLVAHAKRLLHELK 316
>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
Length = 570
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ +G + ++ F ++ EA P + TYN L+S F + D F +
Sbjct: 377 TYNILIDGLCKSGDVEAARAFFDEML-EAGCKPDVYTYNILVSGFCKAGNTDAACGVFDD 435
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ S+ SPNV TY LI+G K +Q MK PD+ Y L+ G SG
Sbjct: 436 MSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGK 495
Query: 312 L 312
L
Sbjct: 496 L 496
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 96/231 (41%), Gaps = 12/231 (5%)
Query: 182 AANKHLKTIGTYNALLGAYMYNGLSD------KCQSLFRDLKK-EAN-ISPSIVTYNTLI 233
AA H +T T + + Y + D K Q ++K AN +P+I TYN L+
Sbjct: 148 AAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALL 207
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ ++ ++ ++I D+ +P+V TY LI G + ++++ M ++
Sbjct: 208 NGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLV 267
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI---CAYSKCSVTDRI 350
DT Y L+RG +G +P+ +Y+ + + + MI C + RI
Sbjct: 268 LDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRI 327
Query: 351 KKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT 401
K L P + L L + K DC EM + AF ++T
Sbjct: 328 FKSMEARGLAPNEVVYSALIHGLCKAR-KMDCALEMLAQMKKAFCTPDTIT 377
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 77/184 (41%), Gaps = 4/184 (2%)
Query: 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL--KTIGTYNAL 196
E ++ R+ G YT I G+ A LF E A + L T+ Y AL
Sbjct: 218 EAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTV-CYTAL 276
Query: 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256
+ + G + S+++ + + + P +VT +T+I + + F+ ++
Sbjct: 277 IRGLLQAGKIPQASSVYKTMTSQGCV-PDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARG 335
Query: 257 LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
L+PN Y+ LI G A E+ MK PDT TY +L+ G SG++
Sbjct: 336 LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAAR 395
Query: 317 KIYE 320
++
Sbjct: 396 AFFD 399
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K+A +P +TYN LI + V+ A F E+ ++ P+V+TYN L++G+ A
Sbjct: 367 KKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNT 426
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
++ M + P+ TY L+ G L + ++ +K
Sbjct: 427 DAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKE 473
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F+ ++ ++P+ V Y+ LI + +D ++K + +P+ TYN LI G
Sbjct: 327 IFKSMEARG-LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGL 385
Query: 272 MTAWMWGKVEE----IYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ G VE +M++AG PD TY +L+ G+ +GN
Sbjct: 386 CKS---GDVEAARAFFDEMLEAG-CKPDVYTYNILVSGFCKAGN 425
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 75/161 (46%), Gaps = 21/161 (13%)
Query: 181 EAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF---G 237
E A L + T+N L+ Y ++ ++ R+++++ ++PS+ T+N ++ G
Sbjct: 85 ELATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSG 144
Query: 238 RLL-LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW--GKVEEIYQMMK---AGP 291
++L +DH F+ + + ++ TY ++ W+ K+++ +M+ A
Sbjct: 145 KVLAAMDH----FETTTTNGCTIDIHTYTAIV-----DWLAKNKKIQDAVALMEKITANG 195
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
P TY LL G G R+E+ +L++ VD P
Sbjct: 196 CTPTIATYNALLNGLCKMG---RLEEAIDLLRKIVDNGCTP 233
>gi|356557985|ref|XP_003547290.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 692
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 111/255 (43%), Gaps = 3/255 (1%)
Query: 175 AADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +LF + + + G T + ++ AY DK +L+ D K N S VT++TLI
Sbjct: 210 AVELFEKMSGFGCEPDGITCSGMVYAYARTNNVDKAVNLY-DRAKAENWSLDAVTFSTLI 268
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
++ D +QE+K + PNV TYN L+ + + + + I++ MK+ V
Sbjct: 269 KMYSMAGNYDKCLEVYQEMKVLGVKPNVATYNTLLGAMLRSKKHRQAKAIHKEMKSNGVS 328
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
PD TY LL Y + +Y+ +K + L ++ + TDR +I
Sbjct: 329 PDFITYASLLEVYTRAQCSEDALGVYKEMKGNGMDMTADLYNKLLAMCADVGYTDRAVEI 388
Query: 354 EALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY 413
M+ + W LI +Y++ + E+E +N+ + T+ +M ++ Y
Sbjct: 389 FYEMKSSGTCQPDSWTFSSLITIYSRSGKVSEVEGMLNEMIQSGFQ-PTIFVMTSLIRCY 447
Query: 414 FRCNAVDKLANFVKR 428
+ D + K+
Sbjct: 448 GKAKRTDDVVKIFKQ 462
Score = 42.0 bits (97), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 53/290 (18%), Positives = 109/290 (37%), Gaps = 7/290 (2%)
Query: 219 EANISPS--IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
+ I+P+ +V YN + V + E F E+ + P+ T++ L+ + +
Sbjct: 147 QPKINPAKHVVLYNVTLKVLRESRDFEGAEKLFDEMLQRGVKPDNITFSTLVNCASVSGL 206
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336
K E+++ M PD T ++ YA + N+ + +Y+ K +
Sbjct: 207 PNKAVELFEKMSGFGCEPDGITCSGMVYAYARTNNVDKAVNLYDRAKAENWSLDAVTFST 266
Query: 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396
+I YS D+ ++ M+++ K N LL + + K+I+ +
Sbjct: 267 LIKMYSMAGNYDKCLEVYQEMKVLGVKPNVATYNTLLGAMLRSKK--HRQAKAIHKEMKS 324
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
++ Y R + K + G + LY+ + M A +
Sbjct: 325 NGVSPDFITYASLLEVYTRAQCSEDALGVYKEMKGNGMDMTADLYNKLLAMCADVGYTDR 384
Query: 457 MESVLKEMENYKIDCSKK--TFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
+ EM++ C TF + Y+ G+ +V +L M ++G+
Sbjct: 385 AVEIFYEMKSSGT-CQPDSWTFSSLITIYSRSGKVSEVEGMLNEMIQSGF 433
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG 191
+R + + + L + G G MT + Y K + + D A ++F E +K+ G
Sbjct: 342 TRAQCSEDALGVYKEMKGNGMDMTADLYNKLLAMCADVGYTDRAVEIFYE-----MKSSG 396
Query: 192 T-------YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDH 244
T +++L+ Y +G + + + ++ ++ P+I +LI +G+ D
Sbjct: 397 TCQPDSWTFSSLITIYSRSGKVSEVEGMLNEMI-QSGFQPTIFVMTSLIRCYGKAKRTDD 455
Query: 245 MEAAFQEIKDSNLSPN 260
+ F+++ D + PN
Sbjct: 456 VVKIFKQLLDLGIVPN 471
>gi|255660936|gb|ACU25637.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 484
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ + +G + F D+K I+P ++TYNT+I+ + R+ ++ E F E
Sbjct: 152 TFNIMIWGFFLSGKVETANRFFEDMKSRX-ITPDVITYNTMINGYYRVKKMEEAEKYFVE 210
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K N+ P V T LI GY++ + + MK + P+ TY LL G N
Sbjct: 211 MKGRNIEPTVVTXTTLIKGYVSVDRVDDALRLXEEMKGFGIKPNAITYSTLLPGLC---N 267
Query: 312 LPRMEKIYELVKHHVD 327
+M + +K VD
Sbjct: 268 AEKMSEARSXLKEMVD 283
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+TI +Y+ L + G + F + E I P+ T+N +I F V+
Sbjct: 113 RTIKSYDVLFKVILRRGRYMMAKRYFNKMLSEG-IEPTRHTFNIMIWGFFLSGKVETANR 171
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306
F+++K ++P+V TYN +I GY + E+ + MK + P T L++GY
Sbjct: 172 FFEDMKSRXITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTXTTLIKGY 230
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 8/215 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ + G K F ++++ + P++VTYNTLI + ++ +D +
Sbjct: 12 TYNILIRGFCSVGELQKGLGCFGEMERNGCL-PNVVTYNTLIDAYCKMGRIDEAFGLLKS 70
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + PN+ +YN +I G + EI + M PD TY LL GY GN
Sbjct: 71 MSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGN 130
Query: 312 LPRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP--W 368
+ I+ E+V++ V A+I + K +R + MR+ + RP
Sbjct: 131 FHQALVIHAEMVRNGVS-PSVVTYTALINSMCKARNLNRAMEFFDQMRI---RGLRPNER 186
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV 403
LI ++++ L E + +N+ E S + V
Sbjct: 187 TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVV 221
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 2/148 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I + N++ A + F + + L+ TY L+ + GL ++ + ++
Sbjct: 153 YTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMT 212
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
E+ SPS+VTYN I L ++ QE+ + L+P+V +Y+ +I+G+
Sbjct: 213 -ESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGEL 271
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
+ ++ Q M V PD TY L++G
Sbjct: 272 DRAFQMKQEMVEKGVSPDAVTYSSLIQG 299
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%)
Query: 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272
F D + + P+ TY TLI F R L++ E+ +S SP+V TYN I G+
Sbjct: 172 FFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHC 231
Query: 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ + Q M + PD +Y ++ G+ G L R
Sbjct: 232 VLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDR 273
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ TYNA + + ++ + +++ E ++P +V+Y+T+IS F R +D
Sbjct: 219 SVVTYNAFIHGHCVLERMEEALGVVQEMV-EKGLAPDVVSYSTIISGFCRKGELDRAFQM 277
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
QE+ + +SP+ TY+ LI G + ++ Q M + PD TY L+ Y
Sbjct: 278 KQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCV 337
Query: 309 SGNLPRMEKIYELVKH 324
G+L + +++ + H
Sbjct: 338 EGDLNKALHLHDEMIH 353
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN LL Y G + + ++ + +SPS+VTY LI+ + ++ F +
Sbjct: 117 TYNTLLNGYCKEGNFHQALVIHAEMVRNG-VSPSVVTYTALINSMCKARNLNRAMEFFDQ 175
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++ L PN TY LI G+ + + I M P TY + G+
Sbjct: 176 MRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCV--- 232
Query: 312 LPRMEKIYELVKHHVD 327
L RME+ +V+ V+
Sbjct: 233 LERMEEALGVVQEMVE 248
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
+SP++ TYN LI F + + F E++ + PNV TYN LI Y G+++
Sbjct: 6 VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCK---MGRID 62
Query: 282 EIYQMMK---AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
E + ++K + + P+ +Y +++ G G++ +I E
Sbjct: 63 EAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILE 104
>gi|255661132|gb|ACU25735.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRL 311
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 111/244 (45%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 197 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG-IEPN 253
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + Y +I Y A + + +
Sbjct: 254 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLH 313
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P D ++L A +G R+E+ + + +D K+ + MI +
Sbjct: 314 ELKRPDNIPRDIAIHIL-----AGAG---RIEEATWVFRQAIDAGEVKDIXVFERMIHLF 365
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTS 399
SK + ++ MR + Y P NV L++ Y K L E +K+ ND +
Sbjct: 366 SKYKKYGNVVEVFDKMRGLG---YFPDSNVIALILNAYGK---LHEFDKA-NDVYMEMQE 418
Query: 400 VTTV 403
V V
Sbjct: 419 VGCV 422
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 116/269 (43%), Gaps = 25/269 (9%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P +V YN +I+VFG+ L + E++ + ++PN +Y+ L
Sbjct: 62 KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + ++ M+ + D T +++ Y G +K++ ++
Sbjct: 121 LTMYVENRKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAK---- 379
++ Y + + L RL+ K NV+ ++ +Y K
Sbjct: 181 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMMMIYGKTLEH 235
Query: 380 ---EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL 436
+ ++EM+ N E S+T I+S + + +D+ A ++ S+G +
Sbjct: 236 EKANNLIQEMQ---NRGIE-PNSIT----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDI 287
Query: 437 CRSLYHSKMVMYASQRRVEEMESVLKEME 465
+ LY + +V Y V + +L E++
Sbjct: 288 DQVLYQTMIVAYERAGLVAHAKRLLHELK 316
>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 927
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 86/189 (45%), Gaps = 8/189 (4%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
YT I + NN DLA + E NK L+ I Y AL+ + + LF +L
Sbjct: 631 YTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCKKQDIETASWLFSELL 690
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAF---QEIKDSNLSPNVFTYNYLIAGYMTA 274
+ +SP+ V YN+LIS + L ++MEAA + + +S ++ TY LI G +
Sbjct: 691 -DGGLSPNSVIYNSLISGYRNL---NNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKE 746
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI 334
++Y M A ++PD Y +L+ G G L +KI ++ P+
Sbjct: 747 GRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIY 806
Query: 335 RAMICAYSK 343
A+I + K
Sbjct: 807 NALIAGHFK 815
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 6/217 (2%)
Query: 96 VDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMT 155
V+ ++ ++ DE +C +N + + L+ L +++ W++ G T
Sbjct: 432 VESREEASKLFDEAVACDI---ANIFTYNSLLSWLCKEGKMSEATTLWQK-MLDKGLAPT 487
Query: 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFR 214
K Y I R N+D+AA +F++ + LK + TY+ L+ Y NG ++ +F
Sbjct: 488 KVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYAFYVFD 547
Query: 215 DLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274
+ E NI PS TYN I+ ++ + ++ + P TYN ++ G++
Sbjct: 548 RMVDE-NIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKE 606
Query: 275 WMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
Y+ M V P+ TY L+ G+ + N
Sbjct: 607 GSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNN 643
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 141 LNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGA 199
LN ++R G G + YT I + + LA DL++E + K + I Y L+
Sbjct: 718 LNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLING 777
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ---EIKDSN 256
G + Q + ++++++ I+P++ YN LI+ + +++ AF+ E+ D
Sbjct: 778 LCGKGQLENAQKILAEMERDS-ITPNVPIYNALIAGHFK---AGNLQEAFRLHNEMLDKG 833
Query: 257 LSPNVFTYNYLIAG 270
L+PN TY+ LI G
Sbjct: 834 LTPNDTTYDILING 847
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 10/148 (6%)
Query: 169 INNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227
+NN++ A +L + + + TY L+ + G L+ ++ + I P I+
Sbjct: 711 LNNMEAALNLQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKG-IIPDII 769
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY--- 284
Y LI+ +++ + E++ +++PNV YN LIAG+ A G ++E +
Sbjct: 770 IYTVLINGLCGKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKA---GNLQEAFRLH 826
Query: 285 -QMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+M+ G + P+ TY +L+ G GN
Sbjct: 827 NEMLDKG-LTPNDTTYDILINGKIKGGN 853
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 25/226 (11%)
Query: 88 LRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRP-RLALEVLNWRRR 146
L+DE+++ ++ V KG C + + F + M + G P R+ VL
Sbjct: 336 LKDEMVSCGVQMNVVVATTLVKGYCKQDKLVSALEFFDKMNENGPSPNRVTYAVL----- 390
Query: 147 QAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGL 205
I++ + N+ A DL+ + NK++ T+ N+L+ ++
Sbjct: 391 ----------------IEWCCKNGNMAKAYDLYTQMKNKNICPTVFIVNSLIRGFLKVES 434
Query: 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
++ LF D +I+ +I TYN+L+S + + +Q++ D L+P +YN
Sbjct: 435 REEASKLF-DEAVACDIA-NIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYN 492
Query: 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+I G+ ++ M + P+ TY +L+ GY +G+
Sbjct: 493 SMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGD 538
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN+++ + G D S+F D+ + + P+++TY+ L+ + + ++ F
Sbjct: 490 SYNSMILGHCRQGNLDMAASVFSDML-DCGLKPNVITYSILMDGYFKNGDTEYAFYVFDR 548
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ D N+ P+ FTYN I G + +++ + +P TY ++ G+ G+
Sbjct: 549 MVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGS 608
Query: 312 L 312
+
Sbjct: 609 V 609
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 2/128 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY L+ NG K L+ +K + NI P++ N+LI F ++ + F E
Sbjct: 386 TYAVLIEWCCKNGNMAKAYDLYTQMKNK-NICPTVFIVNSLIRGFLKVESREEASKLFDE 444
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ N+FTYN L++ + ++Q M + P +Y ++ G+ GN
Sbjct: 445 AVACDIA-NIFTYNSLLSWLCKEGKMSEATTLWQKMLDKGLAPTKVSYNSMILGHCRQGN 503
Query: 312 LPRMEKIY 319
L ++
Sbjct: 504 LDMAASVF 511
>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Brachypodium distachyon]
Length = 904
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/345 (21%), Positives = 144/345 (41%), Gaps = 14/345 (4%)
Query: 170 NNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
N+D A +L E + I Y++++ Y KC +F LK E +PSI++
Sbjct: 388 GNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLK-ECCFTPSIIS 446
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
Y LI+++ ++ V A +E++ + N TY+ LI+G++ + I++ M
Sbjct: 447 YGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEML 506
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+ PD Y LL+ + GN+ R +I E ++ R +I ++
Sbjct: 507 KSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMK 566
Query: 349 RIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV----R 404
R I LMR N L+ + K ++E+++ + +K S+ +
Sbjct: 567 RALNILDLMRRSGCAPTVMTYNALIHGLIKK----NQVERAV--SVLNKMSIAGITPNEH 620
Query: 405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464
I+ Y + K + + + G +L +Y + + R++ +V +EM
Sbjct: 621 TYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREM 680
Query: 465 ENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVN 509
KI + + I+ +A G + ++ M ++G VP N
Sbjct: 681 STQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDG--VPPN 723
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 113/282 (40%), Gaps = 29/282 (10%)
Query: 91 ELLANVDDLDKVFRVLD-------EKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNW 143
E + ++D+ R+L+ + + FR G+A MK+ AL +L+
Sbjct: 522 EAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKR-------ALNILDL 574
Query: 144 RRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA------NKHLKTIGTYNALL 197
RR T MT G+ + N V+ A + + + N+H TY ++
Sbjct: 575 MRRSGCAPTVMTYNALIHGLI---KKNQVERAVSVLNKMSIAGITPNEH-----TYTIIM 626
Query: 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257
Y NG K F +K E + + Y TL+ + + A +E+ +
Sbjct: 627 RGYAANGDIGKAFEYFTKIK-EGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKI 685
Query: 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317
+ N F YN LI G+ + ++ + MK V P+ +TY + +G++ R +K
Sbjct: 686 ARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQK 745
Query: 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359
+ E + +I ++K S+ DR K M+L
Sbjct: 746 VIEEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKL 787
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
YN L+ + G + L + +K E + P+I TY + I+ + + + +E+
Sbjct: 692 YNILIDGWARRGDVWEAADLMKQMK-EDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEM 750
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303
D L PN+ TY LI G+ A + + + ++ MK + PD Y L+
Sbjct: 751 ADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDEAAYHCLV 801
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/282 (17%), Positives = 106/282 (37%), Gaps = 10/282 (3%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
PS + +I + + H A F+ ++ + PN F + L+ Y A V
Sbjct: 267 PSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGVLSC 326
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+ MKA + TY +++ G+A + + +++ K + + +I A+ +
Sbjct: 327 VEEMKAEGIELTIVTYSIIIAGFAKINDAQSADNLFKEAKAKLGDLNGIIYSNIIHAHCQ 386
Query: 344 CSVTDR----IKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS 399
DR ++++E P Y ++ I + ++ CL E+ F
Sbjct: 387 SGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTI-IQDEKKCLIVFERLKECCF----- 440
Query: 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES 459
++ C+++ Y + V K K ES G + Y + + S
Sbjct: 441 TPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFS 500
Query: 460 VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501
+ +EM + + + ++ A+ G + ++L M K
Sbjct: 501 IFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQK 542
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 56/313 (17%), Positives = 134/313 (42%), Gaps = 21/313 (6%)
Query: 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259
Y G ++ F +++ I P+ + +L+ + + + + +E+K +
Sbjct: 279 YAKRGDKHHARATFENMRARG-IEPNAFVFTSLVHAYAVARDMRGVLSCVEEMKAEGIEL 337
Query: 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN--TYLLLLRGYAHSGNLPRMEK 317
+ TY+ +IAG+ + +++ KA + D N Y ++ + SGN+ R E
Sbjct: 338 TIVTYSIIIAGFAKINDAQSADNLFKEAKAK--LGDLNGIIYSNIIHAHCQSGNMDRAE- 394
Query: 318 IYELVKH-HVDGKEFPL--IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--L 372
ELV+ DG + P+ +M+ Y ++ KK + + E + P +
Sbjct: 395 --ELVREMEEDGIDAPIDAYHSMMHGY---TIIQDEKKCLIVFERLKECCFTPSIISYGC 449
Query: 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVT--TVRIMRCIVSSYFRCNAVDKLANFVKRAE 430
LI +Y K + ++ K+I + E ++ + ++S + + + +
Sbjct: 450 LINLYIK---IGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEML 506
Query: 431 SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRR 490
+G + R++Y+ + + ++ +L++M+ ++ S + F + +A G +
Sbjct: 507 KSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMK 566
Query: 491 KVNQVLGLMCKNG 503
+ +L LM ++G
Sbjct: 567 RALNILDLMRRSG 579
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
R +V AADL + + I TY + + A G + Q + ++ + + P+
Sbjct: 700 ARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMA-DVGLKPN 758
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+ TY TLI + + L D +F+E+K + L P+ Y+ L+ ++
Sbjct: 759 LKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDEAAYHCLVTSLLS 806
>gi|255661166|gb|ACU25752.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERVGLVAHAKRL 311
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 116/269 (43%), Gaps = 25/269 (9%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P +V YN +I+VFG+ L + E++ + ++PN +Y+ L
Sbjct: 62 KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + ++ M+ + D T +++ Y G +K++ ++
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAK---- 379
++ Y + + L RL+ K NV+ ++ +Y K
Sbjct: 181 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMMMIYGKTLEH 235
Query: 380 ---EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL 436
+ ++EM+ N E S+T I+S + + +D+ A ++ S+G +
Sbjct: 236 EKANNLIQEMQ---NRGIE-PNSIT----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDI 287
Query: 437 CRSLYHSKMVMYASQRRVEEMESVLKEME 465
+ LY + +V Y V + +L E++
Sbjct: 288 DQVLYQTMIVAYERVGLVAHAKRLLHELK 316
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 109/244 (44%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 197 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG-IEPN 253
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + Y +I Y + + +
Sbjct: 254 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERVGLVAHAKRLLH 313
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P D ++L A +G R+E+ + + +D K+ + MI +
Sbjct: 314 ELKRPDNIPRDIAIHIL-----AGAG---RIEEATWVFRQAIDAGEVKDITVFERMIHLF 365
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTS 399
SK + ++ MR + Y P V L++ Y K L E +K+ ND +
Sbjct: 366 SKYKKYGNVVEVFDKMRGLG---YFPDSXVIALVLNAYGK---LHEFDKA-NDVYMEMQE 418
Query: 400 VTTV 403
V V
Sbjct: 419 VGCV 422
>gi|255661142|gb|ACU25740.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRL 311
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 53/251 (21%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN LL Y L + LFR L + NI ++VTYN+++ ++G+ L + QE
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFR-LMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 244
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE------IYQMMKAGPVMPDTNTYLLLLRG 305
+++ + PN TY+ +I+ +WGKV + ++Q +++ V D Y ++
Sbjct: 245 MQNRGIEPNSITYSTIIS------IWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298
Query: 306 YAHSG----------------NLP------------RMEKIYELVKHHVDG---KEFPLI 334
Y +G N+P R+E+ + + +D K+ +
Sbjct: 299 YERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVF 358
Query: 335 RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSIND 392
MI +SK + ++ MR + Y P NV L++ Y K L E +K+ ND
Sbjct: 359 ERMIHLFSKYKKYGNVVEVFDKMRGLG---YFPDSNVIALILNAYGK---LHEFDKA-ND 411
Query: 393 AFEHKTSVTTV 403
+ V V
Sbjct: 412 VYMEMQEVGCV 422
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 58/308 (18%), Positives = 121/308 (39%), Gaps = 36/308 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 11 TYSTLITHFGKEGLFDAALSWLQKMEQD-RVPGDLVLYSNLIELSRKLCDYSKAISIFSR 69
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S +P++ YN +I + A ++ + + M+ V P T +Y LL Y +
Sbjct: 70 LKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPTTASYSTLLTMYVENKK 129
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 130 FLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 189
Query: 372 LLIRVYAKEDCLEE------------MEKSI----------NDAFEHKTSVTTVRIMR-- 407
LL RVY + E +E+++ EH+ + ++ M+
Sbjct: 190 LL-RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNR 248
Query: 408 ----------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
I+S + + +D+ A ++ S+G + + LY + +V Y V
Sbjct: 249 GIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA 308
Query: 458 ESVLKEME 465
+ +L E++
Sbjct: 309 KRLLHELK 316
>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
Length = 987
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 95/237 (40%), Gaps = 17/237 (7%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPR------LALEVLNWRRRQAGY------GTPMTK 156
+G C N + E+M++ G P L + R + Y G +TK
Sbjct: 536 QGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTK 595
Query: 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRD 215
YT + + N D AA L + N+ K + TY+ LL A ++ S+ D
Sbjct: 596 VTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSIL-D 654
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ + +IV Y +IS + DH ++ F E+ S P+ TY I+ Y
Sbjct: 655 QMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIG 714
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
+ E + M+ V PD TY + + G H G M++ + +K VD P
Sbjct: 715 QIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMG---YMDRAFSTLKRMVDASCEP 768
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 80/170 (47%), Gaps = 23/170 (13%)
Query: 173 DLAADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
D A LF E ++ H + TY + +Y G ++ + L +++++ ++P +VTY+
Sbjct: 682 DHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDG-VTPDVVTYHI 740
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM-------------TAWMWG 278
I+ G + +D + + + D++ PN +TY L+ ++ W W
Sbjct: 741 FINGCGHMGYMDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYIDTSGMWNWI 800
Query: 279 KVEEIYQ----MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
++ ++Q MMK G + P TY ++ G+ + R+E+ L+ H
Sbjct: 801 ELNTVWQLLERMMKHG-LNPTVVTYSSIIAGFCKA---TRLEEACVLLDH 846
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 77/406 (18%), Positives = 145/406 (35%), Gaps = 48/406 (11%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C R + LM+Q G P +W YG K
Sbjct: 328 GYCKSGRMKDALGIKALMEQNGCNPD------DWTYNSLIYGLCGGK------------- 368
Query: 170 NNVDLAADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS--- 225
+D A +L A A T+ T+ L+ Y K + + L+ ++N+ S
Sbjct: 369 --LDEAEELLNGAIARGFTPTVITFTNLINGYC------KAERIDDALRVKSNMISSNCK 420
Query: 226 --IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
+ Y LI+V + + + E+ + L+PNV Y +I GY M G E+
Sbjct: 421 LDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEV 480
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+++M+ P+ TY L+ G L + + + K DG +I +
Sbjct: 481 FKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMAL--ITKMQEDGITPGVIAYTTLIQGQ 538
Query: 344 CSVTD-----RIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT 398
C + R+ ++ L P+++ L L + E+ + + K
Sbjct: 539 CKKHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVR--------KG 590
Query: 399 SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEME 458
V T +V + + D A +++ + G + Y + Q+++ E
Sbjct: 591 VVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEAL 650
Query: 459 SVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
S+L +M + C+ + I+ G+ + M +G+
Sbjct: 651 SILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGH 696
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 58/285 (20%), Positives = 114/285 (40%), Gaps = 10/285 (3%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
AN + Y +++ Y G+ +F+ ++ E P+ TY +LI + +
Sbjct: 451 ANGLAPNVVIYTSIIDGYCKVGMVGAALEVFKLMEHEG-CHPNAWTYGSLIYGLIQDKKL 509
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
A ++++ ++P V Y LI G + +++MM+ + PD Y +L
Sbjct: 510 HKAMALITKMQEDGITPGVIAYTTLIQGQCKKHEFDNAFRLFEMMEKNGLTPDEQAYNVL 569
Query: 303 LRGYAHSGNLPRMEKIYE-LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIP 361
SG R E+ Y LV+ V + +++ +SK TD + + +++
Sbjct: 570 TDALCKSG---RAEEAYSFLVRKGVVLTKVTYT-SLVDGFSKAGNTDFAAVL--IEKMVN 623
Query: 362 EK-EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420
E + + +L++ K+ L E SI D + I+S + D
Sbjct: 624 EGCKADLYTYSVLLQALCKQKKLNE-ALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHD 682
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+ S+G + + Y + Y ++EE E ++ EME
Sbjct: 683 HAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEME 727
>gi|255661144|gb|ACU25741.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRL 311
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 53/251 (21%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN LL Y L + LFR L + NI ++VTYN+++ ++G+ L + QE
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFR-LMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 244
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE------IYQMMKAGPVMPDTNTYLLLLRG 305
+++ + PN TY+ +I+ +WGKV + ++Q +++ V D Y ++
Sbjct: 245 MQNRGIEPNSITYSTIIS------IWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298
Query: 306 YAHSG----------------NLP------------RMEKIYELVKHHVDG---KEFPLI 334
Y +G N+P R+E+ + + +D K+ +
Sbjct: 299 YERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVF 358
Query: 335 RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSIND 392
MI +SK + ++ MR + Y P NV L++ Y K L E +K+ ND
Sbjct: 359 ERMIHLFSKYKKYGNVVEVFDKMRGLG---YFPDSNVIALILNAYGK---LHEFDKA-ND 411
Query: 393 AFEHKTSVTTV 403
+ V V
Sbjct: 412 VYMEMQEVGCV 422
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 58/308 (18%), Positives = 121/308 (39%), Gaps = 36/308 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 11 TYSTLITHFGKEGLFDAALSWLQKMEQD-RVPGDLVLYSNLIELSRKLCDYSKAISIFSR 69
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S P++ YN +I + A ++ + + M+ V P+T +Y LL Y +
Sbjct: 70 LKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKK 129
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 130 FLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 189
Query: 372 LLIRVYAKEDCLEE------------MEKSI----------NDAFEHKTSVTTVRIMR-- 407
LL RVY + E +E+++ EH+ + ++ M+
Sbjct: 190 LL-RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNR 248
Query: 408 ----------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
I+S + + +D+ A ++ S+G + + LY + +V Y V
Sbjct: 249 GIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA 308
Query: 458 ESVLKEME 465
+ +L E++
Sbjct: 309 KRLLHELK 316
>gi|255661134|gb|ACU25736.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
gi|255661138|gb|ACU25738.1| pentatricopeptide repeat-containing protein [Verbena halei]
gi|255661140|gb|ACU25739.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRL 311
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 53/251 (21%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+YN LL Y L + LFR L + NI ++VTYN+++ ++G+ L + QE
Sbjct: 186 SYNTLLRVYGDAELFGEAIHLFR-LMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQE 244
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE------IYQMMKAGPVMPDTNTYLLLLRG 305
+++ + PN TY+ +I+ +WGKV + ++Q +++ V D Y ++
Sbjct: 245 MQNRGIEPNSITYSTIIS------IWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVA 298
Query: 306 YAHSG----------------NLP------------RMEKIYELVKHHVDG---KEFPLI 334
Y +G N+P R+E+ + + +D K+ +
Sbjct: 299 YERAGLVAHAKRLLHELKRPDNIPRDIAIHILAGAGRIEEATWVFRQAIDAGEVKDITVF 358
Query: 335 RAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSIND 392
MI +SK + ++ MR + Y P NV L++ Y K L E +K+ ND
Sbjct: 359 ERMIHLFSKYKKYGNVVEVFDKMRGLG---YFPDSNVIALILNAYGK---LHEFDKA-ND 411
Query: 393 AFEHKTSVTTV 403
+ V V
Sbjct: 412 VYMEMQEVGCV 422
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 116/269 (43%), Gaps = 25/269 (9%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P +V YN +I+VFG+ L + E++ + ++PN +Y+ L
Sbjct: 62 KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + ++ M+ + D T +++ Y G +K++ ++
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAK---- 379
++ Y + + L RL+ K NV+ ++ +Y K
Sbjct: 181 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMMMIYGKTLEH 235
Query: 380 ---EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL 436
+ ++EM+ N E S+T I+S + + +D+ A ++ S+G +
Sbjct: 236 EKANNLIQEMQ---NRGIE-PNSIT----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDI 287
Query: 437 CRSLYHSKMVMYASQRRVEEMESVLKEME 465
+ LY + +V Y V + +L E++
Sbjct: 288 DQVLYQTMIVAYERAGLVAHAKRLLHELK 316
>gi|449459510|ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Cucumis sativus]
gi|449530101|ref|XP_004172035.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Cucumis sativus]
Length = 680
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 114/493 (23%), Positives = 201/493 (40%), Gaps = 67/493 (13%)
Query: 19 RLQRHSSKPKTLPPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLVRLLSETLTYPDARVR 78
R + KP+T P +FT + S S ++D+ T + T LL + R R
Sbjct: 32 RFNKIKIKPRTRIP--IFTASSS---STSKDIWRRQTPSEKSTTT-LLPQKYQRSGRRPR 85
Query: 79 KDLTQTVSALRDELLANVDDL---DKVFRVLDE-KGSCLFRRHSNGYAFVELMKQLGSRP 134
+ S DELLA++ +++ VL KG L R V L+ +
Sbjct: 86 ESSHLDHSIDMDELLASIGQTKNEQELYSVLSPYKGRELSMRF-----MVSLLSRESDWQ 140
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TY 193
R +L +L+W +A Y TP + Y ++ R +LA LF E + L TY
Sbjct: 141 R-SLAILDWINEEALY-TP-SVYAYNVVLRNVLRAKQWELAHGLFDEMRQRALAADRYTY 197
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
+ L+ + G+ D S + ++++ +S +V Y+ LI + +L + F +K
Sbjct: 198 STLITYFGKEGMFDAALSWLQKMEQD-RVSGDLVLYSNLIELSRKLCDYSKAISIFSRLK 256
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
S ++P++ YN +I + A ++ + + + M+A VMPDT +Y LL + +
Sbjct: 257 RSGITPDIVAYNTMINVFGKAKLFREARFLLKEMRAVDVMPDTVSYSTLLNMFVEN---- 312
Query: 314 RMEKIYELVKHHVDGKEF--PL----IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
EK E + + KE PL MI Y + + ++ MR I +
Sbjct: 313 --EKFLEALSVISEMKEVNCPLDLTTCNIMIDVYGQLDMVKEADRLFWRMRKIGIEPNVV 370
Query: 368 WLNVLLIRVYAKEDCLEE----------------------MEKSINDAFEHKTSVTTVRI 405
N +L RVY + + E M K EH+ + V+
Sbjct: 371 SYNTIL-RVYGEAELFGEAIHLFRLMQRKEIKQNVVTYNTMIKIYGKTLEHEKATNLVQD 429
Query: 406 MR------------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
M+ I+S + + +D+ A ++ S+G + + LY + +V Y
Sbjct: 430 MQKRGIEPNAITYSTIISIWGKAGKLDRSAMLFQKLRSSGAEIDQVLYQTMIVAYEKAGL 489
Query: 454 VEEMESVLKEMEN 466
V + +L E++
Sbjct: 490 VGHAKRLLHELKQ 502
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 7/226 (3%)
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ T N ++ Y + + LF ++K I P++V+YNT++ V+G L F
Sbjct: 334 LTTCNIMIDVYGQLDMVKEADRLFWRMRK-IGIEPNVVSYNTILRVYGEAELFGEAIHLF 392
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ ++ + NV TYN +I Y K + Q M+ + P+ TY ++ + +
Sbjct: 393 RLMQRKEIKQNVVTYNTMIKIYGKTLEHEKATNLVQDMQKRGIEPNAITYSTIISIWGKA 452
Query: 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
G L R +++ ++ + L + MI AY K + K+ L+ + + + P
Sbjct: 453 GKLDRSAMLFQKLRSSGAEIDQVLYQTMIVAYEKAGLVGHAKR---LLHELKQPDNIP-- 507
Query: 370 NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR 415
I + AK +EE AF+ + + + C++ + R
Sbjct: 508 RTTAITILAKAGRIEEATWVFRQAFD-AGELKDISVFECMIDLFSR 552
>gi|255661174|gb|ACU25756.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRL 311
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 197 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG-IEPN 253
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + Y +I Y A + + +
Sbjct: 254 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLH 313
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P D ++L G R+E+ + + +D K+ + MI +
Sbjct: 314 ELKRPDNIPRDIAIHILAGAG--------RIEEATWVFRQAIDAGEVKDITVFERMIHLF 365
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTS 399
SK + ++ MR + Y P NV L++ Y K L E +K+ ND +
Sbjct: 366 SKYKKYGNVVEVFDEMRGLG---YFPDSNVIALVLNAYGK---LHEFDKA-NDVYMEMQE 418
Query: 400 VTTV 403
V V
Sbjct: 419 VGCV 422
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/308 (19%), Positives = 122/308 (39%), Gaps = 36/308 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 11 TYSTLITHFGKEGLFDAALSWLQKMEQD-RVPGDLVLYSNLIELSRKLCDYSKAISIFSR 69
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S +P++ YN +I + A ++ + + M+ V PDT +Y LL Y +
Sbjct: 70 LKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPDTASYSTLLTMYVENKK 129
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 130 FLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 189
Query: 372 LLIRVYAKEDCLEE------------MEKSI----------NDAFEHKTSVTTVRIMR-- 407
LL RVY + E +E+++ EH+ + ++ M+
Sbjct: 190 LL-RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNR 248
Query: 408 ----------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
I+S + + +D+ A ++ S+G + + LY + +V Y V
Sbjct: 249 GIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHA 308
Query: 458 ESVLKEME 465
+ +L E++
Sbjct: 309 KRLLHELK 316
>gi|255661158|gb|ACU25748.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRL 311
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 197 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG-IEPN 253
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + Y +I Y A + + +
Sbjct: 254 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLH 313
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P D ++L G R+E+ + + +D K+ + MI +
Sbjct: 314 ELKRPDNIPRDIAIHILAGAG--------RIEEATWVFRQAIDAGEVKDITVFERMIHLF 365
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTS 399
SK + ++ MR + Y P NV L++ Y K L E +K+ ND +
Sbjct: 366 SKYKKYGNVVEVFDKMRGLG---YFPDSNVIALVLNAYGK---LHEFDKA-NDVYMEMQE 418
Query: 400 VTTV 403
V V
Sbjct: 419 VGCV 422
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 116/269 (43%), Gaps = 25/269 (9%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P +V YN +I+VFG+ L + E++ + ++PN +Y+ L
Sbjct: 62 KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + ++ M+ + D T +++ Y G +K++ ++
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAK---- 379
++ Y + + L RL+ K NV+ ++ +Y K
Sbjct: 181 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMMMIYGKTLEH 235
Query: 380 ---EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL 436
+ ++EM+ N E S+T I+S + + +D+ A ++ S+G +
Sbjct: 236 EKANNLIQEMQ---NRGIE-PNSIT----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDI 287
Query: 437 CRSLYHSKMVMYASQRRVEEMESVLKEME 465
+ LY + +V Y V + +L E++
Sbjct: 288 DQVLYQTMIVAYERAGLVAHAKRLLHELK 316
>gi|168032379|ref|XP_001768696.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679988|gb|EDQ66428.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 211
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 76/162 (46%), Gaps = 3/162 (1%)
Query: 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDK 208
YG Y + + + + +L D+F + + G+++ALL AY G D+
Sbjct: 52 YGAKPDPTTYERLMHLHAKKGHAELVEDIFQQMREAGVDAKCGSFDALLLAYCRAGKPDQ 111
Query: 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268
S+FR+ K ++ PS+V +N +I G+ + + ++ + P+ TY LI
Sbjct: 112 ALSVFREYK--LSMKPSLVAFNMIIDACGKAGRDEEAVQLYVDLIECRYRPDTVTYTSLI 169
Query: 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + A + K +E+Y+ M + V P +TY ++ A G
Sbjct: 170 SAVVQAGRYEKADELYRRMLSDGVEPSGHTYATMIHACARRG 211
>gi|410110113|gb|AFV61136.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
filifolia]
Length = 439
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 139 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 197
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M++ +
Sbjct: 198 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIE 257
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 258 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 317
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/296 (18%), Positives = 118/296 (39%), Gaps = 3/296 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 17 TYSTLITHFGKEGLFDAALSWLQKMEQD-QVPGDLVLYSNLIELSRKLCDYSKAISIFSR 75
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S +P++ YN +I + A ++ + + MK VMP+T +Y LL Y +
Sbjct: 76 LKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKK 135
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 136 FLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 195
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
LL RVY + E + + K V ++ Y + +K N ++ +S
Sbjct: 196 LL-RVYGDAELFGE-AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQS 253
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
G Y + + ++ +++ + +++ + ++ + F M AY G
Sbjct: 254 RGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAG 309
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 111/244 (45%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 203 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG-IEPN 259
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + + +I Y A + + +
Sbjct: 260 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLH 319
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P DT ++L A +G R+E+ + + +D K+ + MI
Sbjct: 320 ELKRPDNIPRDTAIHIL-----AGAG---RIEEATYVFRQAIDAGEVKDITVFERMIHLL 371
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI--RVYAKEDCLEEMEKSINDAFEHKTS 399
SK + ++ MR + Y P +V+ I Y K L+E +K+ ND +
Sbjct: 372 SKYKKXSNVVEVFDKMRGLG---YFPDSDVIAIVLNAYGK---LQEFDKA-NDVYMEMQE 424
Query: 400 VTTV 403
V V
Sbjct: 425 VGCV 428
>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
Length = 454
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 4/178 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN LLG NG + SLF ++ A I+PS VTY TLI VF ++ + Q
Sbjct: 78 TYNTLLGGLCKNGRVAQACSLFGSMEG-AGITPSDVTYTTLIDVFCKMCQFETAYGLLQL 136
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ SP V++Y +I G + ++++ MK PD TY L+ G
Sbjct: 137 MASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVK-- 194
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL 369
R+ + +L+ V+ P TDRIK+ L + + ++ P L
Sbjct: 195 -QRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDL 251
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 10/159 (6%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSL--FRD 215
YT + GR D AA L + A + + + TY A + GL D + + +R+
Sbjct: 287 YTPIFRELGRRRGFDRAARLLQKMARRGVAPNVVTYTAF-----FKGLGDWKEGMRAYRE 341
Query: 216 LKK--EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
++ E I P +V YN L+ F + +D E + + S L PN+ TYN L+ +
Sbjct: 342 FRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCR 401
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+ E+ M + PD T+ L+ G G +
Sbjct: 402 KGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFRVGQV 440
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 14/161 (8%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y L+ A G DK S ++ +E + P + TYN +I + + F+
Sbjct: 12 SYCYLVKALCRTGKIDKACSTIAEMARE-KLVPDVFTYNVVIDTLCKARRISRAIEFFET 70
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + P+V TYN L+ G + ++ M+ + P TY L+ +
Sbjct: 71 MPE----PDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFC---K 123
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352
+ + E Y L++ K P + YS CS+ + + K
Sbjct: 124 MCQFETAYGLLQLMASRKCSPTV------YSYCSIINGLCK 158
>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 716
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 134/323 (41%), Gaps = 12/323 (3%)
Query: 193 YNALLGAYMYNGLSDKCQSL-FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y L+ Y N D +L R+ E +VTYNTL++ R ++D + F+E
Sbjct: 402 YTILINGYCRN--DDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKE 459
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + + P+ +T LI GY K +++ M + PD TY L+ G+ G
Sbjct: 460 MVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVG- 518
Query: 312 LPRMEKIYELVKHHVDGKEFP-LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN 370
MEK EL + + FP I I CS+ + + L + EK +P L
Sbjct: 519 --EMEKAKELWYDMISREIFPSYISFSILINGFCSL-GLVSEAFRLWDEMKEKGIKPTLV 575
Query: 371 VL--LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
+I+ Y + L + +N + +++S+ + D+ +
Sbjct: 576 TCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCI-TYNTLINSFVKEENFDRAFFLINN 634
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
E G Y++ + ++ R++E E VL +M + I+ K T+ + Y +
Sbjct: 635 MEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDN 694
Query: 489 RRKVNQVLGLMCKNGYDVPVNAF 511
++ +V M + G+ VP + F
Sbjct: 695 MKEAFRVHDEMLQRGF-VPDDKF 716
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 8/174 (4%)
Query: 154 MTKEEYTKGIKFAGRINN------VDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLS 206
+++E + I F+ IN V A L+ E K +K T+ T N ++ Y+ G
Sbjct: 531 ISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNL 590
Query: 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266
K + E + P +TYNTLI+ F + D +++ L PN+ TYN
Sbjct: 591 SKANDFLNTMISEG-VPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNA 649
Query: 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
++ G+ + E + M + PD +TY L+ GY N+ ++++
Sbjct: 650 ILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHD 703
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
+I NALLGA + G D ++ D K NI ++ T N +++ + +D++
Sbjct: 188 SINACNALLGAIVKVGWVDLAWKVYEDFVKSGNIV-NVYTLNIMVNALCKDGKLDNVGVY 246
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
E+++ + ++ TYN L+ Y + + + M + P TY L+ G
Sbjct: 247 LSEMEEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCK 306
Query: 309 SGNLPRMEKIYE 320
G+ R +++ +
Sbjct: 307 EGSYERAKRVLD 318
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 168 RINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
++ VDLA ++ + + ++ + T N ++ A +G D +++ E + +
Sbjct: 201 KVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEME-EKGVYADL 259
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTYNTL++ + R LV + L P +FTYN LI G + + + +
Sbjct: 260 VTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDE 319
Query: 287 MKAGPVMPDTNTY 299
M + P+ T+
Sbjct: 320 MLGVGLCPNAATF 332
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Query: 183 ANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL 241
A K LK + TYNAL+ G ++ + + ++ + P+ T+N ++ R
Sbjct: 286 AGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLG-VGLCPNAATFNPMLVESCRKED 344
Query: 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301
V E F E+ + P++ +++ ++ + G+ ++ MK ++PDT Y +
Sbjct: 345 VWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTI 404
Query: 302 LLRGYAHSGNL 312
L+ GY + ++
Sbjct: 405 LINGYCRNDDV 415
>gi|255661178|gb|ACU25758.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 352
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRL 311
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/308 (19%), Positives = 122/308 (39%), Gaps = 36/308 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 11 TYSTLITHFGKEGLFDAALSWLQKMEQD-RVPGDLVLYSNLIELSXKLCDYSKAISIFSR 69
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S P++ YN +I + A ++ + + M+ VMP+T +Y LL Y +
Sbjct: 70 LKRSGFMPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVMPNTASYSTLLTMYVENKK 129
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 130 FLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 189
Query: 372 LLIRVYAKEDCLEE------------MEKSI----------NDAFEHKTSVTTVRIMR-- 407
LL RVY + E +E+++ EH+ + ++ M+
Sbjct: 190 LL-RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNR 248
Query: 408 ----------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
I+S + + +D+ A ++ S+G + + LY + +V Y V
Sbjct: 249 GIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHA 308
Query: 458 ESVLKEME 465
+ +L E++
Sbjct: 309 KRLLHELK 316
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 79/166 (47%), Gaps = 22/166 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 197 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG-IEPN 253
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + Y +I Y A + + +
Sbjct: 254 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLH 313
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+K +P D ++L A +G R+E+ + + +D E
Sbjct: 314 ELKRPDNIPRDIAIHIL-----AGAG---RIEEATWVFRQAIDAGE 351
>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Query: 175 AADLFAEAA-NKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A LF E + H + +YN ++ NG + +FR +++ P++VTYNT+I
Sbjct: 185 AVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRG-KPNVVTYNTII 243
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
+ LV+ E+ D + P+V TYN ++ G+ + + +++ M VM
Sbjct: 244 DSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVM 303
Query: 294 PDTNTYLLLLRGYAHSG 310
PDT T+ +L+ G G
Sbjct: 304 PDTVTFNILVDGLCKEG 320
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 175 AADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +LF E ++ L + Y+ LL + +G D+ L +++ E I P+I+ Y LI
Sbjct: 430 ALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMH-ERRIKPNIILYTILI 488
Query: 234 SVFGRLLLVDHMEAA---FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290
+ + +E A F ++ + P+++TYN +I G + + + E ++ M+
Sbjct: 489 R---GMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDD 545
Query: 291 PVMPDTNTYLLLLRGY 306
+PD+ +Y ++++G+
Sbjct: 546 GFLPDSCSYNVIIQGF 561
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 73/160 (45%), Gaps = 7/160 (4%)
Query: 175 AADLFAEAANKHL--KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232
A L +E + K+L T+ TY+ L+ G + +LF+++ + + P ++ Y+ L
Sbjct: 395 AKRLLSEMSEKNLTPDTV-TYSTLMQGLCQVGRPREALNLFKEMCS-SGLLPDLMAYSIL 452
Query: 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292
+ F + +D +E+ + + PN+ Y LI G A +E++ + A +
Sbjct: 453 LDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGI 512
Query: 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
PD TY ++++G G ++ YE + D P
Sbjct: 513 RPDIWTYNVMIKGLLKEG---LSDEAYEFFRKMEDDGFLP 549
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 6/187 (3%)
Query: 129 QLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK 188
Q+G RPR E LN + G Y+ + + ++D A L E + +K
Sbjct: 423 QVG-RPR---EALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIK 478
Query: 189 -TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
I Y L+ G + + LF L + I P I TYN +I + L D
Sbjct: 479 PNIILYTILIRGMFIAGKLEVAKELFSKLSADG-IRPDIWTYNVMIKGLLKEGLSDEAYE 537
Query: 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307
F++++D P+ +YN +I G++ ++ M D++T+ +LL +
Sbjct: 538 FFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLDLES 597
Query: 308 HSGNLPR 314
H + R
Sbjct: 598 HDEIISR 604
Score = 38.1 bits (87), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 54/285 (18%), Positives = 107/285 (37%), Gaps = 8/285 (2%)
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
I P +T+NTLI+ + F E+ S PNV +YN +I G
Sbjct: 162 IQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAV 221
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHV--DGKEFPLIRAMI 338
+++ M+ P+ TY ++ + +E + E+V + D + I
Sbjct: 222 RVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGF 281
Query: 339 CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT 398
C+ + + R+ K ++P+ N+ L+ KE + E + +++ K
Sbjct: 282 CSLGQLNEATRLFKEMVGRNVMPDT---VTFNI-LVDGLCKEGMVSE-ARCVSETMTEKG 336
Query: 399 SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEME 458
+ ++ Y N +D+ + G S Y+ + Y +R+ E +
Sbjct: 337 AEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAK 396
Query: 459 SVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
+L EM + T+ + G+ R+ + MC +G
Sbjct: 397 RLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSG 441
>gi|410110141|gb|AFV61150.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
turbinata]
Length = 441
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 140 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 198
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M++ V
Sbjct: 199 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGVE 258
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 259 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 318
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/308 (19%), Positives = 122/308 (39%), Gaps = 36/308 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 18 TYSTLITHFGKEGLFDAALSWLQKMEQD-QVPGDLVLYSNLIELSRKLCDYSKAISIFSR 76
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S P++ YN +I + A ++ + + MK VMP+T +Y LL Y +
Sbjct: 77 LKXSGFXPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLTMYVENKK 136
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 137 FLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 196
Query: 372 LLIRVYAKEDCLEE------------MEKSI----------NDAFEHKTSVTTVRIMRC- 408
LL RVY + E +E+++ EH+ + ++ M+
Sbjct: 197 LL-RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSR 255
Query: 409 -----------IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
I+S + + +D+ A ++ S+G + + L+ + +V Y V
Sbjct: 256 GVEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHA 315
Query: 458 ESVLKEME 465
+ +L E++
Sbjct: 316 KRLLHELK 323
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 111/244 (45%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ + P+
Sbjct: 204 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG-VEPN 260
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + + +I Y A + + +
Sbjct: 261 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLH 320
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P DT ++L A +G R+E+ + + +D K+ + MI
Sbjct: 321 ELKRPDNIPRDTAIHIL-----AGAG---RIEEATYVFRQAIDAGEVKDITVFERMIHLL 372
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI--RVYAKEDCLEEMEKSINDAFEHKTS 399
SK + ++ MR + Y P +V+ I Y K L+E +K+ ND +
Sbjct: 373 SKYKKYSNVIEVFDKMRGLG---YFPDSDVIAIVLNAYGK---LQEFDKA-NDVYMEMQE 425
Query: 400 VTTV 403
V V
Sbjct: 426 VGCV 429
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 62/121 (51%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ A+ G D + + +++E N P++VT+N++++ + ++ F E
Sbjct: 189 TYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDE 248
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ L+P+V +YN L++GY + ++ M ++PD T+ L+ +GN
Sbjct: 249 MVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGN 308
Query: 312 L 312
L
Sbjct: 309 L 309
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 82/175 (46%), Gaps = 3/175 (1%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLK 217
+T I + N++ A L A+ + L+ T+ AL+ + G D +++
Sbjct: 296 FTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMR 355
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
K I PS+V YN LI+ + +L +D +E++ + P+V TY+ +I+GY
Sbjct: 356 K-CGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNL 414
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE-LVKHHVDGKEF 331
++ Q M V+PD TY L+RG L +++E +++ V EF
Sbjct: 415 DSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEF 469
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 129/289 (44%), Gaps = 36/289 (12%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ YNAL+ Y G D + L R+++ + + P +VTY+T+IS + + V ++++A
Sbjct: 362 SVVCYNALINGYCKLGRMDLARELIREMEAK-RVKPDVVTYSTIISGYCK---VGNLDSA 417
Query: 249 F---QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
F Q++ + P+ TY+ LI G E+++ M V PD TY L+ G
Sbjct: 418 FQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDG 477
Query: 306 YAHSGNLPRMEKIY-ELVKHHV--DGKEFPLI--------------RAMICAYSKCSVTD 348
+ GN+ + ++ E+++ V D + ++ R + Y + V D
Sbjct: 478 HCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPD 537
Query: 349 RIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC 408
I K +ALM + E++ V L++ + + ++E +K + + +
Sbjct: 538 NI-KYDALMLCCSKAEFKSV--VALLKGFCMKGLMKEADKVYQSMLDRNWKLDG-SVYSI 593
Query: 409 IVSSYFRCNAVDKLANFVKRAESAGW--------RLCRSLYHSKMVMYA 449
++ + R V K +F K+ +G+ L R L+ MV+ A
Sbjct: 594 LIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEA 642
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 9/203 (4%)
Query: 116 RHS---NGYAFVELMKQLGSRPRL--ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN 170
RH N Y + L++ L +R RL A+ V+ R +T AG ++
Sbjct: 145 RHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELD 204
Query: 171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
+ L E N + T+N+++ G + + +F ++ +E ++P +V+YN
Sbjct: 205 GAERVVSLMREEGNAKPNLV-TFNSMVNGLCKAGRMEGARKVFDEMVREG-LAPDVVSYN 262
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW-MWGKVEEIYQMMKA 289
TL+S + ++ + A F E+ L P+V T+ LI A + V + QM +
Sbjct: 263 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER 322
Query: 290 GPVMPDTNTYLLLLRGYAHSGNL 312
G M + T+ L+ G+ G L
Sbjct: 323 GLRMNEV-TFTALIDGFCKKGFL 344
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/315 (20%), Positives = 119/315 (37%), Gaps = 43/315 (13%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ A G ++ + D++ A +P+ VTYNTL++ F R +D E
Sbjct: 154 TYNILVRALCARGRLEEAVGVVGDMRG-AGCAPNAVTYNTLVAAFCRAGELDGAERVVSL 212
Query: 252 IKD-SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+++ N PN+ T+N ++ G A +++ M + PD +Y LL GY G
Sbjct: 213 MREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVG 272
Query: 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR--PW 368
L ++ + + ++I A K ++ + A MR E+ R
Sbjct: 273 CLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR---ERGLRMNEV 329
Query: 369 LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
LI + K+ L++ ++ + + +C + C
Sbjct: 330 TFTALIDGFCKKGFLDDALLAVEE------------MRKCGIQPSVVC------------ 365
Query: 429 AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
Y++ + Y R++ +++EME ++ T+ + Y G
Sbjct: 366 ------------YNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN 413
Query: 489 RRKVNQVLGLMCKNG 503
Q+ M K G
Sbjct: 414 LDSAFQLNQKMLKKG 428
>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
restorer; AltName: Full=Protein PPR; AltName:
Full=Restorer for CMS; Flags: Precursor
gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
Length = 791
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/287 (22%), Positives = 115/287 (40%), Gaps = 16/287 (5%)
Query: 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
P +V+Y T+I+ F + D + + E+ D + P+V TYN +IA A K E+
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE-----FPLIRAMI 338
M VMPD TY +L GY SG P+ E I L K DG E + L+ +
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHGYCSSGQ-PK-EAIGFLKKMRSDGVEPDVVTYSLLMDYL 311
Query: 339 CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEH 396
C +C +I + ++ +P + L++ YA + L EM + D
Sbjct: 312 CKNGRCMEARKI------FDSMTKRGLKPEITTYGTLLQGYATKGALVEMH-GLLDLMVR 364
Query: 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456
+ ++ +Y + VD+ + G Y + + + RVE+
Sbjct: 365 NGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVED 424
Query: 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503
++M + + + + + TC + + +++ M G
Sbjct: 425 AMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG 471
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ Y G D+ L + + P+ VTY+TLI+ + ++ ++ F+E
Sbjct: 513 TYNTLINGYCLAGKMDEAMKLLSGMVS-VGLKPNTVTYSTLINGYCKISRMEDALVLFKE 571
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
++ S +SP++ TYN ++ G +E+Y + + +TY ++L G
Sbjct: 572 MESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHG 625
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 3/132 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
++ L+ AY G D+ +F ++++ ++P+ VTY +I + + V+ F++
Sbjct: 373 VFSILICAYAKQGKVDQAMLVFSKMRQQG-LNPNAVTYGAVIGILCKSGRVEDAMLYFEQ 431
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-IYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ D LSP YN LI G T W + EE I +M+ G + +T + ++ + G
Sbjct: 432 MIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICL-NTIFFNSIIDSHCKEG 490
Query: 311 NLPRMEKIYELV 322
+ EK++EL+
Sbjct: 491 RVIESEKLFELM 502
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
+N+++ ++ G + + LF +L + P+++TYNTLI+ + +D +
Sbjct: 479 FNSIIDSHCKEGRVIESEKLF-ELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGM 537
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
L PN TY+ LI GY +++ M++ V PD TY ++L+G
Sbjct: 538 VSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQG 590
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 89/461 (19%), Positives = 165/461 (35%), Gaps = 91/461 (19%)
Query: 97 DDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPM 154
D +D V R + E G C+ N +++ L+K L +R + ALE+L+ G G+P
Sbjct: 140 DAMDIVLRRMTELG-CI----PNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPP 194
Query: 155 TKEEYTKGIKFAGRINNVD------------------------LAADLFAEAANKHLKTI 190
YT I + + D +AA A+A +K ++ +
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254
Query: 191 GT------------YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF-- 236
T YN++L Y +G + + ++ + + P +VTY+ L+
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDG-VEPDVVTYSLLMDYLCK 313
Query: 237 -GRLLLVDHMEA--AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
GR MEA F + L P + TY L+ GY T ++ + +M +
Sbjct: 314 NGRC-----MEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIH 368
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV---DGKEFPLIRAMICAYSKCSVTDRI 350
PD + +L+ YA G + + ++ ++ + + + ++C + V D +
Sbjct: 369 PDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR--VEDAM 426
Query: 351 KKIEALM----------------------------RLIPEKEYRP-WLNVLLIRVYAKED 381
E ++ LI E R LN +
Sbjct: 427 LYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSH 486
Query: 382 CLEEMEKSINDAFEHKTSVTT---VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR 438
C E FE + V +++ Y +D+ + S G +
Sbjct: 487 CKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNT 546
Query: 439 SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479
Y + + Y R+E+ + KEME+ + T+ I+
Sbjct: 547 VTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNII 587
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 115/293 (39%), Gaps = 44/293 (15%)
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM---KAGPVMPDTNTY 299
D M+ + + + PNVF+YN L+ G + E+ MM + G PD +Y
Sbjct: 140 DAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSY 199
Query: 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEAL 356
++ G+ G+ +K Y +D P + ++I A K D+ ++
Sbjct: 200 TTVINGFFKEGD---SDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNT 256
Query: 357 M---RLIPE-KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS 412
M ++P+ Y L+ KE + ++K +D E V T ++ +
Sbjct: 257 MVKNGVMPDCMTYNSILHGYCSSGQPKE-AIGFLKKMRSDGVE--PDVVTYSLLMDYLCK 313
Query: 413 YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS 472
RC K+ + + + G + + Y + + YA++ + EM +L M I
Sbjct: 314 NGRCMEARKIFDSMTK---RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPD 370
Query: 473 KKTFWIMYYAYATCGQRRKVNQ----------------------VLGLMCKNG 503
F I+ AYA G KV+Q V+G++CK+G
Sbjct: 371 HYVFSILICAYAKQG---KVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSG 420
>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
Length = 2052
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 16/204 (7%)
Query: 172 VDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230
V+ A LF E +K H T TY ++ A + + ++ Q + DL E + +VTYN
Sbjct: 1822 VERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVL-DLMHENGCAFDLVTYN 1880
Query: 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE---IYQMM 287
LI+ F + ++D F E+ P+V TYN ++ G+ A GKVEE ++ M
Sbjct: 1881 MLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKA---GKVEEANKLFAEM 1937
Query: 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEK-IYELVKHH-VDGKEFPLIRAMICAYSKCS 345
KA + P+ TY + +G + + E+ K VD + + + IC K
Sbjct: 1938 KARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLVDAISYVALISTICKLGKGK 1997
Query: 346 VTDRIKKIEALMRLIPEKEYRPWL 369
+ + L+R + EK ++P L
Sbjct: 1998 LGFQ------LLREMLEKGFKPNL 2015
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 2/142 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ ++ Y +G + + +L +KK A + + YN +++ +
Sbjct: 1699 TYSTIVRGYCEDGETRQALALLEHMKK-AEVPANAKLYNIILTHLCKHGKEKEALDLLHS 1757
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ ++ +P+++TYN LI + + +MM+A D TY L+ G GN
Sbjct: 1758 MATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGLCRKGN 1817
Query: 312 LP-RMEKIYELVKHHVDGKEFP 332
R+E+ + L + VD P
Sbjct: 1818 GRFRVERAFRLFEEMVDKGHTP 1839
>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
Length = 987
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 94/237 (39%), Gaps = 17/237 (7%)
Query: 109 KGSCLFRRHSNGYAFVELMKQLGSRPR------LALEVLNWRRRQAGY------GTPMTK 156
+G C N + E+M+Q G P L + R + Y G +TK
Sbjct: 536 QGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTK 595
Query: 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRD 215
YT + + N D AA L + N+ K + TY+ LL A ++ S+ D
Sbjct: 596 VTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSIL-D 654
Query: 216 LKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ + +IV Y +IS + DH ++ F E+ S P+ TY I+ Y
Sbjct: 655 QMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIG 714
Query: 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
+ E + M+ V PD TY + + G H G + R + +K VD P
Sbjct: 715 RIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRA---FSTLKRMVDASCEP 768
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 84/177 (47%), Gaps = 24/177 (13%)
Query: 173 DLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231
D A LF E ++ H + TY + +Y G ++ + L +++++ ++P +VTYN
Sbjct: 682 DHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDG-VTPDVVTYNI 740
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM-------------TAWMWG 278
I+ G + +D + + + D++ PN +TY L+ ++ W W
Sbjct: 741 FINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSLINAHYVDTSGMWNWI 800
Query: 279 KVEEIYQ----MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331
++ ++Q MMK G + P TY ++ G+ + R+E+ L+ H + GK+
Sbjct: 801 ELNMVWQLLERMMKHG-LNPTVVTYSSIIAGFCKA---TRLEEACVLLDHML-GKDI 852
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 116/285 (40%), Gaps = 10/285 (3%)
Query: 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
AN + TY +++ Y G+ +F+ ++ E P+ TY +LI + +
Sbjct: 451 ANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEG-CHPNAWTYGSLIYGLIQDKKL 509
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
A ++++ ++P V TY LI G + +++MM+ + PD Y +L
Sbjct: 510 HKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVL 569
Query: 303 LRGYAHSGNLPRMEKIYE-LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIP 361
SG R E+ Y LV+ V + +++ +SK TD + + +++
Sbjct: 570 TDALCKSG---RAEEAYSFLVRKGVVLTKVTYT-SLVDGFSKAGNTDFAAVL--IEKMVN 623
Query: 362 EK-EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420
E + + +L++ K+ L E SI D + I+S + D
Sbjct: 624 EGCKADLYTYSVLLQALCKQKKLNE-ALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHD 682
Query: 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+ S+G + + Y + Y R+EE E ++ EME
Sbjct: 683 HAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEME 727
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 78/406 (19%), Positives = 146/406 (35%), Gaps = 48/406 (11%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C R + LM+Q G P +W YG K
Sbjct: 328 GYCKSGRMKDALGIKALMEQNGCNPD------DWTYNSLIYGLCGGK------------- 368
Query: 170 NNVDLAADLFAEA-ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS--- 225
+D A +L A A T+ T+ L+ Y K + + L+ ++N+ S
Sbjct: 369 --LDEAEELLNGAIARGFTPTVITFTNLINGYC------KAERIDDALRVKSNMISSNCK 420
Query: 226 --IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEI 283
+ Y LI+V + + + E+ + L+PNV TY +I GY M G E+
Sbjct: 421 LDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEV 480
Query: 284 YQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
+++M+ P+ TY L+ G L + + + K DG +I +
Sbjct: 481 FKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMAL--ITKMQEDGITPGVITYTTLIQGQ 538
Query: 344 CSVTD-----RIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKT 398
C + R+ ++ L P+++ L L + E+ + + K
Sbjct: 539 CKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCKSGRAEEAYSFLVR--------KG 590
Query: 399 SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEME 458
V T +V + + D A +++ + G + Y + Q+++ E
Sbjct: 591 VVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEAL 650
Query: 459 SVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
S+L +M + C+ + I+ G+ + M +G+
Sbjct: 651 SILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSGH 696
>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Glycine max]
Length = 583
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 2/149 (1%)
Query: 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
NV A + F E + LK I TYN+L+ NG D+ +L+ D + P+IVT+
Sbjct: 288 NVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALW-DKMVGLGLKPNIVTF 346
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
N LI+ F + ++ F +I + +L PN T+N +I + A M + ++ M
Sbjct: 347 NALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLD 406
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318
+ P+ +TY L+ G + N+ +K+
Sbjct: 407 EGIFPNVSTYNCLIAGLCRNQNVRAAKKL 435
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 147/359 (40%), Gaps = 26/359 (7%)
Query: 159 YTKGIKFAGRINNV-DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK 217
+ G+ AG++N D+ D+ A + + I TYN L+ + G + K LK
Sbjct: 206 FINGLCKAGKLNKAEDVIEDIKAWGFSPN---IVTYNTLIDGHCKKGSAGKMYRADAILK 262
Query: 218 KE-AN-ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275
+ AN I P+ +T+NTLI F + V + AF+E++ L PN+ TYN LI G
Sbjct: 263 EMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNN- 321
Query: 276 MWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332
GK++E ++ M + P+ T+ L+ G+ + K+++ +
Sbjct: 322 --GKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAI 379
Query: 333 LIRAMICAYSKCSVTDRIKKIEALM---RLIPEKEYRPWLNVLLIR---VYAKEDCLEEM 386
MI A+ K + + + M + P L L R V A + L EM
Sbjct: 380 TFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEM 439
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446
E +E K V T I+ + + + K + + G + Y++ M
Sbjct: 440 EN-----YELKADVVTYNIL---IGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMD 491
Query: 447 MYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
Y + ++ V +ME + T+ ++ + G+ N++L M + G +
Sbjct: 492 GYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLN 550
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 4/176 (2%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T+N ++ A+ G+ ++ +L + E I P++ TYN LI+ R V + E
Sbjct: 380 TFNTMIDAFCKAGMMEEGFALHNSMLDEG-IFPNVSTYNCLIAGLCRNQNVRAAKKLLNE 438
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+++ L +V TYN LI G+ K E++ M V P+ TY L+ GY GN
Sbjct: 439 MENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGN 498
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367
L K+ + +GK ++ + C T +++ L+ + EK P
Sbjct: 499 LKAALKVR--TQMEKEGKRANVVTYNVLIKGFCK-TGKLEDANRLLNEMLEKGLNP 551
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 16/157 (10%)
Query: 168 RINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R NV A L E N LK + TYN L+G + +G K + L ++ + P+
Sbjct: 425 RNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLN-VGVKPNH 483
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQ---EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE- 282
VTYNTL+ + + +++AA + +++ NV TYN LI G+ GK+E+
Sbjct: 484 VTYNTLMDGY---CMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKT---GKLEDA 537
Query: 283 ---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316
+ +M++ G + P+ TY ++ G +P +E
Sbjct: 538 NRLLNEMLEKG-LNPNRTTYDVVRLEMLEKGFIPDIE 573
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 63/316 (19%), Positives = 118/316 (37%), Gaps = 38/316 (12%)
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
S+ + N L+S + M+ ++E+ + PN+ T+N I G A K E++
Sbjct: 164 SLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVI 223
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP---LIRAMICAY 341
+ +KA P+ TY L+ G+ G+ +M + ++K + K P +I +
Sbjct: 224 EDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGF 283
Query: 342 SKC-SVTDRIKKIEALMR--LIPE-KEYRPWLNVL------------------------- 372
K +V E + R L P Y +N L
Sbjct: 284 CKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNI 343
Query: 373 -----LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427
LI + K+ ++E K +D E V ++ ++ + +++
Sbjct: 344 VTFNALINGFCKKKMIKEARKLFDDIAEQDL-VPNAITFNTMIDAFCKAGMMEEGFALHN 402
Query: 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
G S Y+ + + V + +L EMENY++ T+ I+ + G
Sbjct: 403 SMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDG 462
Query: 488 QRRKVNQVLGLMCKNG 503
+ K ++LG M G
Sbjct: 463 EPSKAEKLLGEMLNVG 478
>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 114/277 (41%), Gaps = 23/277 (8%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C + + Y +E MK G +P T Y I +I
Sbjct: 630 GFCKSGKVNKAYQLLEEMKTKGLQP--------------------TVVTYGSVIDGLAKI 669
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
+ +D A LF EA +K + + Y++L+ + G D+ + +L ++ ++P+ T
Sbjct: 670 DRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKG-LTPNTYT 728
Query: 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288
+N L+ + +D FQ +K+ PN TY+ ++ G + K +Q M+
Sbjct: 729 WNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQ 788
Query: 289 AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348
+ P+T TY ++ G A GN+ + ++E K + AMI S +
Sbjct: 789 KQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAM 848
Query: 349 RIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE 385
+ RL + Y VLL ++ K DCLE+
Sbjct: 849 DAYILFEETRLKGCRIYSKTCVVLLDALH-KADCLEQ 884
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 85/225 (37%), Gaps = 17/225 (7%)
Query: 115 RRHSNGYAFVELMKQLGSRPRL---------------ALEVLNWRRRQAGYGTPMTKEEY 159
R+ + +E M++ RP A +L R+ G +T +
Sbjct: 181 RKLREAFGVIETMRKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLF 240
Query: 160 TKGIKFAGRINNVDLAADLFAE-AANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218
T I R VD A L E +N + YN + + G D F +LK
Sbjct: 241 TTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKS 300
Query: 219 EANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278
+ + P VT+ ++I V + VD F+E+ + P V+ YN +I GY + +
Sbjct: 301 QG-LVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFN 359
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
+ + + K +P Y +L G + +I E +K
Sbjct: 360 EAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMK 404
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y +L+ + G + +++++ SP ++ N + + ++ A F+E
Sbjct: 518 VYTSLIRNFFKCGRKEDGHKIYKEMMHRG-CSPDLMLLNNYMDCVFKAGEIEKGRALFEE 576
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
IK L+P+V +Y+ LI G + +++ MK + DT Y +++ G+ SG
Sbjct: 577 IKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSG- 635
Query: 312 LPRMEKIYELVKH 324
++ K Y+L++
Sbjct: 636 --KVNKAYQLLEE 646
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 82/402 (20%), Positives = 155/402 (38%), Gaps = 27/402 (6%)
Query: 96 VDDLDKVFRVLDEKGS--CLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTP 153
VD+ ++F LD S C+ YA+ ++ GS + E + RQ G
Sbjct: 323 VDEAVELFEELDSNKSVPCV-------YAYNTMIMGYGSVGKFN-EAYSLLERQKRKGCI 374
Query: 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLF 213
+ Y + GR V+ A + + +YN L+ G + +
Sbjct: 375 PSVIAYNCILTCLGRKGKVEEALRILEAMKMDAAPNLTSYNILIDMLCKAGELEAALKV- 433
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+D KEA + P+I+T N +I + +D + F + +P+ T+ LI G
Sbjct: 434 QDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGL-- 491
Query: 274 AWMWGKVEEIY----QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329
GKV + Y +M+ +G P+ Y L+R + G KIY+ + H
Sbjct: 492 -GRHGKVNDAYMLYEKMLDSGQT-PNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSP 549
Query: 330 EFPLIRA-MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLN--VLLIRVYAKEDCLEEM 386
+ L+ M C + I+K AL I + P + +LI K ++
Sbjct: 550 DLMLLNNYMDCVFK----AGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDT 605
Query: 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446
K + E + T R ++ + + V+K ++ ++ G + Y S +
Sbjct: 606 YKLFYEMKEQGLHLDT-RAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVID 664
Query: 447 MYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488
A R++E + +E ++ +D + + + + G+
Sbjct: 665 GLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGR 706
>gi|255661170|gb|ACU25754.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRL 311
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 110/244 (45%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 197 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG-IEPN 253
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + Y +I Y A + + +
Sbjct: 254 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERAGLVAHAKRLLH 313
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P D ++L A +G R+E+ + + +D K+ + MI +
Sbjct: 314 ELKRPDNIPRDIAIHIL-----AGAG---RIEEATWVFRQAIDAGEVKDITVFERMIHLF 365
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHKTS 399
SK + + MR + Y P NV L++ Y K L E +K+ ND +
Sbjct: 366 SKYKKYGNVVVVFDKMRGLG---YFPDSNVIALVLNAYGK---LHEFDKA-NDVYMEMQE 418
Query: 400 VTTV 403
V V
Sbjct: 419 VGCV 422
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 116/269 (43%), Gaps = 25/269 (9%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P +V YN +I+VFG+ L + E++ + ++PN +Y+ L
Sbjct: 62 KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTL 120
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327
+ Y+ + + ++ M+ + D T +++ Y G +K++ ++
Sbjct: 121 LTMYVENKKFLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGI 180
Query: 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAK---- 379
++ Y + + L RL+ K NV+ ++ +Y K
Sbjct: 181 EPNVVSYNTLLRVYGDAEL---FGEAIHLFRLMQRKNIEQ--NVVTYNSMMMIYGKTLEH 235
Query: 380 ---EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL 436
+ ++EM+ N E S+T I+S + + +D+ A ++ S+G +
Sbjct: 236 EKANNLIQEMQ---NRGIE-PNSIT----YSTIISIWGKVGKLDRAAMLFQKLRSSGVDI 287
Query: 437 CRSLYHSKMVMYASQRRVEEMESVLKEME 465
+ LY + +V Y V + +L E++
Sbjct: 288 DQVLYQTMIVAYERAGLVAHAKRLLHELK 316
>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
Length = 616
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 145/347 (41%), Gaps = 22/347 (6%)
Query: 170 NNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDL-KKEANISPSIV 227
N D A LF + +K I TYN ++ +G +K + L ++ +K +P IV
Sbjct: 111 GNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIV 170
Query: 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287
TYNTLI+ F R + A +++K + ++P+V T N L++G G VEE +++
Sbjct: 171 TYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKD---GDVEEALEIL 227
Query: 288 K----AGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343
AGPV PD TY ++ +G + +I + + D F ++ + K
Sbjct: 228 DGMKLAGPV-PDVITYNSIIHALCVAGKVVEAAEILKTMSCSPDLVTF---NTLLDGFCK 283
Query: 344 CSVTDR-IKKIEALMR--LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSV 400
+ R ++ +E + R ++P+ L L RV + +E+ + + +
Sbjct: 284 AGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGY-----I 338
Query: 401 TTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESV 460
V +V + +++ VK G R +Y S + Y V + +
Sbjct: 339 PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREI 398
Query: 461 LKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVP 507
L EM + + T+ I+ G K ++ + GY VP
Sbjct: 399 LAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGY-VP 444
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 46/207 (22%)
Query: 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIG 191
SRP LA++ +W Q GY KH +
Sbjct: 5 SRPDLAIQFFDWAGEQDGY----------------------------------KH--DVH 28
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA--F 249
+YN LL + +G + +++DL + SP++VT+ LI G M A
Sbjct: 29 SYNHLLDILVKSGHHFRTGKVYKDL-LHSGCSPNLVTFKILIR--GNCKAGQAMRALEFL 85
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ + + +++P+V+ +N LI G + ++++ M++ V P+ TY ++ G S
Sbjct: 86 RALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKS 145
Query: 310 GNLPRMEKIYELVKHHV--DGKEFPLI 334
GNL EK EL++ + GK P I
Sbjct: 146 GNL---EKARELLEEMIRKGGKSAPDI 169
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 6/176 (3%)
Query: 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK-HLKT 189
G PR ALEVL R+ +T YT + R+ V +A L E + ++
Sbjct: 285 GMLPR-ALEVLEEMCRENILPDVIT---YTILVNGLCRVGQVQVAFYLLEEIVRQGYIPD 340
Query: 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249
+ Y +L+ +G ++ L +++ +V Y++L+S + R V
Sbjct: 341 VIAYTSLVDGLCKSGEIEEAHKLVKEMSVRG-CRTGVVMYSSLVSGYCRAGNVHKAREIL 399
Query: 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305
E+ N+ P +FTYN ++ G + K + + A +PD TY L+ G
Sbjct: 400 AEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDG 455
>gi|255661184|gb|ACU25761.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSVFSEMREJKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M++ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKRL 311
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/296 (19%), Positives = 119/296 (40%), Gaps = 3/296 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 11 TYSTLITHFGKEGLFDAALSWLQKMEQD-RVPGDLVLYSNLIELSRKLCDYSKAISIFSR 69
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S +P++ YN +I + A ++ + + MKA VMP+T +Y LL Y +
Sbjct: 70 LKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTXSYSTLLTMYVENKK 129
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 130 FLEALSVFSEMREJKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 189
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
LL RVY + E + + K V ++ Y + +K N ++ +S
Sbjct: 190 LL-RVYGDAELFGE-AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQS 247
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
G Y + + ++ +++ + +++ + I+ + F M AY G
Sbjct: 248 RGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAG 303
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 111/244 (45%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 197 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG-IEPN 253
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + + +I Y A + + +
Sbjct: 254 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLH 313
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P DT ++L A +G R+E+ + + +D K+ + MI
Sbjct: 314 ELKRPDNIPRDTAIHIL-----AGAG---RIEEATYVFRQAIDAGEVKDITVFERMIHLL 365
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI--RVYAKEDCLEEMEKSINDAFEHKTS 399
SK + ++ MR + Y P +V+ I Y K L+E +K+ ND +
Sbjct: 366 SKYKKYSNVVEVFDKMRGLG---YFPDSDVIAIVLNAYGK---LQEFDKA-NDVYMEMQE 418
Query: 400 VTTV 403
V V
Sbjct: 419 VGCV 422
>gi|410110093|gb|AFV61126.1| pentatricopeptide repeat-containing protein 123, partial [Lantana
microcephala]
Length = 440
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 139 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 197
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M++ +
Sbjct: 198 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIE 257
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 258 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKRL 317
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 58/296 (19%), Positives = 119/296 (40%), Gaps = 3/296 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 17 TYSTLITHFGKEGLFDAALSWLQKMEQD-RVPGDLVLYSNLIELSRKLCDYSKAISIFSR 75
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S +P++ YN +I + A ++ + + MKA VMP+T +Y LL Y +
Sbjct: 76 LKRSGFTPDLVAYNAMINVFGKAKLFREARSLIGEMKAAGVMPNTASYSTLLTMYVENKK 135
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 136 FLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 195
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
LL RVY + E + + K V ++ Y + +K N ++ +S
Sbjct: 196 LL-RVYGDAELFGE-AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQS 253
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
G Y + + ++ +++ + +++ + I+ + F M AY G
Sbjct: 254 RGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAG 309
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 111/244 (45%), Gaps = 34/244 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 203 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG-IEPN 259
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + + +I Y A + + +
Sbjct: 260 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGIEIDQILFQTMIVAYERAGLVAHAKRLLH 319
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P DT ++L A +G R+E+ + + +D K+ + MI
Sbjct: 320 ELKRPDNIPRDTAIHIL-----AGAG---RIEEATYVFRQAIDAGEVKDITVFERMIHLL 371
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI--RVYAKEDCLEEMEKSINDAFEHKTS 399
SK + ++ MR + Y P +V+ I Y K L+E +K+ ND +
Sbjct: 372 SKYKKYSNVVEVFDKMRGLG---YFPDSDVIAIVLNAYGK---LQEFDKA-NDVYMEMQE 424
Query: 400 VTTV 403
V V
Sbjct: 425 VGCV 428
>gi|218194139|gb|EEC76566.1| hypothetical protein OsI_14394 [Oryza sativa Indica Group]
Length = 701
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 10/177 (5%)
Query: 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAE--AANKHLKTIGT 192
RLAL++L G P+ Y+ I A R D A + F A++ L T
Sbjct: 196 RLALDML-------ASGVPLDNITYSTLITAARRCRQFDKAVEWFERMYASDGVLPDEVT 248
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y+A+L Y G+ ++ +LF D + + P V + L +FG D ++ F+E+
Sbjct: 249 YSAILDVYAQLGMKEEVLALF-DRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEM 307
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309
++ + PN+F YN L+ G +++ M A V P+ T L + Y +
Sbjct: 308 REVGIKPNIFVYNALLEALGKTGKPGLARNLFEEMTAEGVEPNARTLTALAKIYGRA 364
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 3/147 (2%)
Query: 174 LAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
LA D+ A L I TY+ L+ A DK F + + P VTY+ ++
Sbjct: 197 LALDMLASGVP--LDNI-TYSTLITAARRCRQFDKAVEWFERMYASDGVLPDEVTYSAIL 253
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+ +L + + + A F + S P+ + L + A + ++ +++ M+ +
Sbjct: 254 DVYAQLGMKEEVLALFDRARGSGWKPDHVAFAVLAKMFGEAGDYDGIQFVFKEMREVGIK 313
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYE 320
P+ Y LL +G ++E
Sbjct: 314 PNIFVYNALLEALGKTGKPGLARNLFE 340
>gi|145524846|ref|XP_001448245.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415789|emb|CAK80848.1| unnamed protein product [Paramecium tetraurelia]
Length = 967
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 133/313 (42%), Gaps = 24/313 (7%)
Query: 159 YTKGIKFAGRINNVDL--AADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDL 216
YT I +N+DL A LF E + YN LL A + G ++ L ++
Sbjct: 340 YTTLINGLKNSDNMDLRLAFQLFEEYKQYNQPDQIIYNCLLDACINAGDLNRGFQLLNEM 399
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM---- 272
K+ +I +TYNTLI GR ++ + F+E+K + PN ++N L+ +
Sbjct: 400 KQSQSIQLDEITYNTLIKGCGRKKRLNEAISLFEEMKQIGIKPNRISFNSLLDSCVKCNK 459
Query: 273 --TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA--HSGNLPRMEKIYELVKHHVDG 328
AW + + +M K + PD TY +L+ G HS + I L + G
Sbjct: 460 MNVAWRYFE-----EMRKQYGIFPDNFTYSILVNGIKTNHSNRDELLRAITLLEQIQETG 514
Query: 329 KEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCL 383
+ P L ++I A C + I+K L + + K P +LI+ Y K + L
Sbjct: 515 QFKPDEILYNSLIDA---CVKFNEIQKGMQLFKEMKNKSIEPSSVTYGILIKAYGKMNDL 571
Query: 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHS 443
+ + + K + V C+V + R + +D+ F+++ +S + LY +
Sbjct: 572 NGAFRMFEEMKQKKIPINDV-TYGCLVDACVRNDRLDQALQFIEQMKSQNLPINTVLYTT 630
Query: 444 KMVMYASQRRVEE 456
+ + + EE
Sbjct: 631 IIKGFCKLNQTEE 643
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 63/134 (47%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252
Y ++ + +++ F +K+ P+++TYN+L+ + L++ + FQE+
Sbjct: 628 YTTIIKGFCKLNQTEEAMKYFSLMKQNQRTYPNLITYNSLLDGLVKNGLMNQADKLFQEL 687
Query: 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
+S + P++ T++ L+ G+ ++ E Q M + PD + L+L +
Sbjct: 688 VESTIKPDLITFSTLLKGHCRRGNMKRLNETVQTMLHYQINPDESLLQLILESCLNQQQY 747
Query: 313 PRMEKIYELVKHHV 326
+IY+ +H +
Sbjct: 748 HNGVQIYDQFQHQI 761
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 52/276 (18%), Positives = 113/276 (40%), Gaps = 29/276 (10%)
Query: 96 VDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMT 155
++DL+ FR+ +E + Y + R AL+ + + Q P+
Sbjct: 568 MNDLNGAFRMFEEMKQKKIPINDVTYGCLVDACVRNDRLDQALQFIEQMKSQ---NLPIN 624
Query: 156 KEEYTKGIKFAGRINNVDLAADLFA--EAANKHLKTIGTYNALLGAYMYNGLSDKCQSLF 213
YT IK ++N + A F+ + + + TYN+LL + NGL ++ LF
Sbjct: 625 TVLYTTIIKGFCKLNQTEEAMKYFSLMKQNQRTYPNLITYNSLLDGLVKNGLMNQADKLF 684
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
++L E+ I P ++T++TL+ R + + Q + ++P+ ++ +
Sbjct: 685 QEL-VESTIKPDLITFSTLLKGHCRRGNMKRLNETVQTMLHYQINPDESLLQLILESCLN 743
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH----SGNLPRMEKIYELVK------ 323
+ +IY + + T L+++R ++ S +P + ++Y+L+
Sbjct: 744 QQQYHNGVQIYDQFQHQ-IPQSTQLLLIIIRLHSQDKQLSSAIPLLNRLYQLLDESRIQH 802
Query: 324 ------------HHVDGKEFPLIRAMICAYSKCSVT 347
H +D + +P+I ++ K +
Sbjct: 803 QQLETTINSLLIHPLDEQTYPIITKIVTLALKSDIN 838
>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 925
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 98/230 (42%), Gaps = 14/230 (6%)
Query: 98 DLDKVFRV---LDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPM 154
DLD F + +DE+G N + L+ L + R+ E L++ +G
Sbjct: 278 DLDSAFEIFNRMDEEGC-----EPNAATYSTLINGLCNSGRVN-EALDFISEMTRHGVLP 331
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLF 213
T +T I + ++ A +F + K K + TY +L+ +S LF
Sbjct: 332 TVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISG---QRVSRMAIGLF 388
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
+ ++ + P+ VTYN L++V + +D F + PN +YN LI GY T
Sbjct: 389 HRMSRDG-VVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCT 447
Query: 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
K + M G P TY ++++GY SG+ ++ EL+K
Sbjct: 448 IGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMK 497
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
+Y L+ + + +F ++ + + P+ VTY LIS + + +D +
Sbjct: 507 SYTELISGFCKISKMELASGMFNEMM-DRGLCPNEVTYTALISGYCKDEKLDCAARMLER 565
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S PNV TYN LI G + EE+ ++M + PD TY ++ G ++G
Sbjct: 566 MKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGA 625
Query: 312 LP-RMEKIYELVKH 324
+P +E ++VKH
Sbjct: 626 IPLALEMFNKMVKH 639
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
T+ TYN ++ Y +G +D + +L K P +Y LIS F ++ ++
Sbjct: 469 TLVTYNIIIKGYCDSGDTDVAIRVL-ELMKANGCQPDEWSYTELISGFCKISKMELASGM 527
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
F E+ D L PN TY LI+GY + + MK P+ TY +L+ G
Sbjct: 528 FNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTK 587
Query: 309 SGNLPRMEKIYELV 322
N E++ +++
Sbjct: 588 QNNFSGAEELCKVM 601
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 29/223 (13%)
Query: 113 LFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYG--------TPMTKEEYTKGIK 164
L R HS+ Y K +A+ +L R R A G + K E T+ +
Sbjct: 127 LSREHSHKYGPDTFAK-------VAMRLLESRDRPAAVGRARIHMIKSCSNKAEMTQALN 179
Query: 165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
+ D+F++ K + TY LL ++ + + +E + P
Sbjct: 180 YL----------DMFSQRGPK--MGLFTYTTLLIQLNKLNMTSTVMDRYHQILREG-LQP 226
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
+++ YN++I+ + V E+ ++ S + P+ FTY +I GY EI+
Sbjct: 227 NLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIF 286
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKHHV 326
M P+ TY L+ G +SG + ++ I E+ +H V
Sbjct: 287 NRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGV 329
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/332 (20%), Positives = 121/332 (36%), Gaps = 20/332 (6%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYNAL+ M N D +F + K + P+ +YN LI + + + +
Sbjct: 402 TYNALMNVLMENMEIDSALIVFNMMGKHGCL-PNTSSYNELIRGYCTIGDTEKAMSMLTN 460
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ +P + TYN +I GY + + ++MKA PD +Y L+ G+
Sbjct: 461 MLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFC---K 517
Query: 312 LPRMEKIYELVKHHVDGKEFP---LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW 368
+ +ME + +D P A+I Y K +++ ++ + RP
Sbjct: 518 ISKMELASGMFNEMMDRGLCPNEVTYTALISGYCK---DEKLDCAARMLERMKRSGCRPN 574
Query: 369 LNV--LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFV 426
+ +LI K++ E+ E K S V +++ A+
Sbjct: 575 VQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVV-TYSTVINGLCNNGAIPLALEMF 633
Query: 427 KRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486
+ G Y S + + RVEE E + E++ + + T+ M
Sbjct: 634 NKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMS 693
Query: 487 GQRRKVNQVLGLMCKNG-------YDVPVNAF 511
G+ + LG M G YDV +
Sbjct: 694 GKVDRAFDFLGEMINAGCQPTLQTYDVLIKGL 725
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 167 GRINN--VDLAADLFAEAANKH--LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI 222
G NN + LA ++F + KH L + TY++L+ A G ++ + +F +LKK+ I
Sbjct: 619 GLCNNGAIPLALEMFNKMV-KHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLI 677
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
P VTY +I V VD E+ ++ P + TY+ LI G E
Sbjct: 678 -PDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQN-------EM 729
Query: 283 IYQMMKAGPVMPDTNTY 299
+Y + A P T+T+
Sbjct: 730 VYHKLVALPNAASTSTF 746
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 87/205 (42%), Gaps = 11/205 (5%)
Query: 120 GYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF 179
G A + ++K ++ + + LN+ + G M YT + ++N D +
Sbjct: 158 GRARIHMIKSCSNKAEMT-QALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRY 216
Query: 180 AEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238
+ + L+ + YN+++ A +G +S+ + K + + P TY ++I + R
Sbjct: 217 HQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKVFK-SGMKPDTFTYTSMILGYCR 275
Query: 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE----IYQMMKAGPVMP 294
+D F + + PN TY+ LI G + G+V E I +M + G V+P
Sbjct: 276 NRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNS---GRVNEALDFISEMTRHG-VLP 331
Query: 295 DTNTYLLLLRGYAHSGNLPRMEKIY 319
+T+ + G + KI+
Sbjct: 332 TVHTFTAPIVALCDMGRIEDAWKIF 356
>gi|356549954|ref|XP_003543355.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11900-like [Glycine max]
Length = 366
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 1/130 (0%)
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
N ++ A+ G DK +F LK++ +VTYN ++ + GR VD M F IK
Sbjct: 179 NKIIFAFAKCGQRDKSLVIFDHLKRQG-YGLDLVTYNIVLDILGRTGRVDEMLDVFASIK 237
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313
D+ P+ +YN LI G A + ++ M V PD TY ++ + SGN+
Sbjct: 238 DTGFVPDTVSYNTLINGLRKAGRFDMCFVYFKEMTEKGVEPDLLTYTAIIEIFGRSGNVE 297
Query: 314 RMEKIYELVK 323
K + +K
Sbjct: 298 ESLKCFREMK 307
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Query: 129 QLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK-HL 187
+ G R + +L + + +RQ GYG + Y + GR VD D+FA + +
Sbjct: 187 KCGQRDK-SLVIFDHLKRQ-GYGLDLVT--YNIVLDILGRTGRVDEMLDVFASIKDTGFV 242
Query: 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247
+YN L+ G D C F+++ E + P ++TY +I +FGR V+
Sbjct: 243 PDTVSYNTLINGLRKAGRFDMCFVYFKEMT-EKGVEPDLLTYTAIIEIFGRSGNVEESLK 301
Query: 248 AFQEIKDSNLSPNVFTYNYLI 268
F+E+K + P+++ Y LI
Sbjct: 302 CFREMKLKGVLPSIYIYRSLI 322
>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 489
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 11/164 (6%)
Query: 168 RINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKK----EANI 222
R + A DL + A + T TYN +L + G + F +KK + +
Sbjct: 209 RAKDTSRALDLLRQMAESGVTPTKTTYNIILKGFFRAGQIQHAWNFFLQMKKRGAKDESC 268
Query: 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
P IV+Y T+I G +D F E+ +P+V TYN LI G VE+
Sbjct: 269 KPDIVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCTPSVATYNALI---QVICKKGNVED 325
Query: 283 ---IYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
++ M MP+ TY +L+RG H G + R K+ E +K
Sbjct: 326 AVTVFDDMVRKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMK 369
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 78/186 (41%), Gaps = 7/186 (3%)
Query: 141 LNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT------IGTYN 194
L+ R+ A G TK Y +K R + A + F + + K I +Y
Sbjct: 217 LDLLRQMAESGVTPTKTTYNIILKGFFRAGQIQHAWNFFLQMKKRGAKDESCKPDIVSYT 276
Query: 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254
++ G DK + LF ++ KE +PS+ TYN LI V + V+ F ++
Sbjct: 277 TIIHGLGVAGQLDKARKLFDEMSKEG-CTPSVATYNALIQVICKKGNVEDAVTVFDDMVR 335
Query: 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314
+ PNV TY LI G + ++ + MK P TY +L+R G + +
Sbjct: 336 KDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFEEGEIEK 395
Query: 315 MEKIYE 320
++E
Sbjct: 396 ALCLFE 401
>gi|255661172|gb|ACU25755.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 426
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +FAE K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 133 ALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 191
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M+ +
Sbjct: 192 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRGIE 251
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 252 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERSGLVAHAKRL 311
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 58/308 (18%), Positives = 122/308 (39%), Gaps = 36/308 (11%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 11 TYSTLITHFGKEGLFDAALSWLQKMEQD-RVPGDLVLYSNLIELSRKLCDYSKAISIFSR 69
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S +P++ YN +I + A ++ + + M+ V P+T +Y LL Y +
Sbjct: 70 LKRSRFTPDLVAYNAMINVFGKAKLFREARSLISEMRTAGVTPNTASYSTLLTMYVENKK 129
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 130 FLEALSVFAEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 189
Query: 372 LLIRVYAKEDCLEE------------MEKSI----------NDAFEHKTSVTTVRIMR-- 407
LL RVY + E +E+++ EH+ + ++ M+
Sbjct: 190 LL-RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNR 248
Query: 408 ----------CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
I+S + + +D+ A ++ S+G + + LY + +V Y V
Sbjct: 249 GIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERSGLVAHA 308
Query: 458 ESVLKEME 465
+ +L E++
Sbjct: 309 KRLLHELK 316
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 109/248 (43%), Gaps = 42/248 (16%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 197 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQNRG-IEPN 253
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + Y +I Y + + + +
Sbjct: 254 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVDIDQVLYQTMIVAYERSGLVAHAKRLLH 313
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P D ++L G R+E+ + + +D K+ + MI +
Sbjct: 314 ELKRPDNIPRDIAIHILAGAG--------RIEEATWVFRQAIDAGEVKDITVFERMIHLF 365
Query: 342 SK----CSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFE 395
SK +V + K+ L Y P NV L++ Y K L E +K+ ND +
Sbjct: 366 SKYKKYGNVVEVFDKMCGL-------GYFPDSNVIALVLNAYGK---LHEFDKA-NDVYM 414
Query: 396 HKTSVTTV 403
V V
Sbjct: 415 EMQEVGCV 422
>gi|410110117|gb|AFV61138.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
hermannioides]
Length = 382
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 94 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 152
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M++ +
Sbjct: 153 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIE 212
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 213 PNSITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 272
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 107/235 (45%), Gaps = 34/235 (14%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 158 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG-IEPN 214
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G+ +D FQ+++ S + + + +I Y A + + +
Sbjct: 215 SITYSTIISIWGKXGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLH 274
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA---MICAY 341
+K +P DT ++L A +G R+E+ + + +D E I MI
Sbjct: 275 ELKRPDNIPRDTAIHIL-----AGAG---RIEEATYVFRQAIDAGEVKXITVFERMIHLL 326
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI--RVYAKEDCLEEMEKSINDAF 394
SK + ++ MR + Y P +V+ I Y K L+E +K+ ND +
Sbjct: 327 SKYKKYSNVVEVFDKMRGLG---YFPDSDVIAIVLNAYGK---LQEFDKA-NDVY 374
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P +V YN +I+VFG+ L + E+K + + PN +Y+ L
Sbjct: 23 KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTL 81
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ Y+ + + ++ M+ + D T +++ Y G +K++
Sbjct: 82 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF 133
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 49/266 (18%), Positives = 103/266 (38%), Gaps = 2/266 (0%)
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281
+ +V Y+ LI + +L + F +K S +P++ YN +I + A ++ +
Sbjct: 1 VPGDLVLYSNLIELSRKLCDYSKAISIFSRLKRSGFTPDLVAYNAMINVFGKAKLFREAR 60
Query: 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAY 341
+ MK VMP+T +Y LL Y + ++ ++ + MI Y
Sbjct: 61 SLISEMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVY 120
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT 401
+ + K+ MR + + N LL RVY + E + + K
Sbjct: 121 GQLGMAKEADKLFWGMRKMGIEPNVVSYNTLL-RVYGDAELFGE-AIHLFRLMQRKNIEQ 178
Query: 402 TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL 461
V ++ Y + +K N ++ +S G Y + + ++ +++ +
Sbjct: 179 NVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKXGKLDRAAMLF 238
Query: 462 KEMENYKIDCSKKTFWIMYYAYATCG 487
+++ + ++ + F M AY G
Sbjct: 239 QKLRSSGVEIDQILFQTMIVAYERAG 264
>gi|410110111|gb|AFV61135.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
duartei]
Length = 381
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 93 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 151
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M++ +
Sbjct: 152 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIE 211
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 212 PNSITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 271
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 109/235 (46%), Gaps = 34/235 (14%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 157 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG-IEPN 213
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + + +I Y A + + +
Sbjct: 214 SITYSTIISIWGKVGKLDRAAXLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLH 273
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P DT ++L A +G R+E+ + + +D K+ + MI
Sbjct: 274 ELKRPDNIPRDTAIHIL-----AGAG---RIEEATYVFRQXIDAGEVKDITVFERMIHLL 325
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI--RVYAKEDCLEEMEKSINDAF 394
SK + ++ MR + Y P +V+ I Y K L+E +K+ ND +
Sbjct: 326 SKYKKYSNVVEVFDKMRGLG---YFPDSDVIAIVLNAYGK---LQEFDKA-NDVY 373
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ P +V YN +I+VFG+ L + E+K + + PN +Y+ L
Sbjct: 22 KAISIFSRLKR-LGFXPDLVAYNAMINVFGKAKLFREARSLIGEMKTAGVMPNTTSYSTL 80
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ Y+ + + ++ M+ + D T +++ Y G +K++
Sbjct: 81 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF 132
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 51/274 (18%), Positives = 105/274 (38%), Gaps = 35/274 (12%)
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+V Y+ LI + +L + F +K P++ YN +I + A ++ + +
Sbjct: 4 LVLYSNLIELSRKLCDYSKAISIFSRLKRLGFXPDLVAYNAMINVFGKAKLFREARSLIG 63
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345
MK VMP+T +Y LL Y + ++ ++ + MI Y +
Sbjct: 64 EMKTAGVMPNTTSYSTLLTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLG 123
Query: 346 VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE------------MEKSI--- 390
+ K+ MR + + N LL RVY + E +E+++
Sbjct: 124 MAKEADKLFWGMRKMGIEPNVVSYNTLL-RVYGDAELFGEAIHLFRLMQRKNIEQNVVTY 182
Query: 391 -------NDAFEHKTSVTTVRIMR------------CIVSSYFRCNAVDKLANFVKRAES 431
EH+ + ++ M+ I+S + + +D+ A ++ S
Sbjct: 183 NSMMMIYGKTLEHEKANNLIQEMQSRGIEPNSITYSTIISIWGKVGKLDRAAXLFQKLRS 242
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465
+G + + L+ + +V Y V + +L E++
Sbjct: 243 SGVEIDQILFQTMIVAYERAGLVAHAKRLLHELK 276
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 5/169 (2%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEA 220
+K + ++D A ++ E H+ + TY+ L+ +G + LF ++ +
Sbjct: 207 VKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKD 266
Query: 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280
I P +TYN LI+ F VD + +K + +PNVF Y+ L+ G+ +
Sbjct: 267 QILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEA 326
Query: 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329
+E++ MK+ + PDT Y L+ + +G R+++ EL+K + K
Sbjct: 327 KEVFDEMKSLGLKPDTVGYTTLINFFCRAG---RVDEAMELLKDMRENK 372
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 193 YNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS-VFGRLLLVDHMEAAFQE 251
+N L+ + NG D + ++KK P+++TY+TLI+ + G L + +E +
Sbjct: 203 FNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEM 262
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + P+ TYN LI G+ + +I + MK P+ Y L+ G+ G
Sbjct: 263 VSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGR 322
Query: 312 LPRMEKIYELVK 323
L +++++ +K
Sbjct: 323 LEEAKEVFDEMK 334
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 7/177 (3%)
Query: 137 ALEVLN-WRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH--LKTIGTY 193
A EV+ ++ Y +T G+ +GR+ A +LF E +K L TY
Sbjct: 219 AFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKE---AIELFEEMVSKDQILPDALTY 275
Query: 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253
NAL+ + + D+ + +KK +P++ Y+ L++ F + ++ + F E+K
Sbjct: 276 NALINGFCHGEKVDRALKIMEFMKKNG-CNPNVFNYSALMNGFCKEGRLEEAKEVFDEMK 334
Query: 254 DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
L P+ Y LI + A + E+ + M+ DT T+ ++L G G
Sbjct: 335 SLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREG 391
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 84/198 (42%), Gaps = 20/198 (10%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
Y+AL+ + G ++ + +F ++K + P V Y TLI+ F R VD ++
Sbjct: 309 NYSALMNGFCKEGRLEEAKEVFDEMKS-LGLKPDTVGYTTLINFFCRAGRVDEAMELLKD 367
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP---VMPDTNTYLLLLRGYAH 308
++++ + T+N ++ G G+ EE M++ P V + +Y ++L
Sbjct: 368 MRENKCRADTVTFNVILGGLCRE---GRFEEARGMLERLPYEGVYLNKASYRIVLNSLCR 424
Query: 309 SGNLPRMEKIYEL------VKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPE 362
G L + ++ L + H E + +C K V D + + L+ L +
Sbjct: 425 EGELQKATQLVGLMLGRGVLPHFATSNE---LLVHLCEAGK--VGDAVMALLGLLELGFK 479
Query: 363 KEYRPWLNVLLIRVYAKE 380
E W LL+ + +E
Sbjct: 480 PEPNSW--ALLVELICRE 495
>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
Length = 649
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 8/159 (5%)
Query: 170 NNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228
V+ A E +K +L I TYN+++ Y +G K Q + + ++ NI P ++T
Sbjct: 486 GQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQD-NILPDLIT 544
Query: 229 YNTLISVFGRLLLVDHMEAAFQE---IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+NTLI + + ++M AF ++ + P+ TYN +I G+ + +++
Sbjct: 545 FNTLIHGY---IKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFK 601
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
M A + PD TY+ L+ G+ +GN ++++ + H
Sbjct: 602 KMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMH 640
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ ++ G ++ ++ + N+ P+I+TYN++I + R V + Q+
Sbjct: 474 TYSILIDSHCEKGQVEEAFGFLDEMVSKGNL-PNIMTYNSIIKGYCRSGNVKKGQQFLQK 532
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ N+ P++ T+N LI GY+ ++ +M+ V PD TY +++ G++ GN
Sbjct: 533 MMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGN 592
Query: 312 LPRMEKIYE 320
+ ++++
Sbjct: 593 MEEAGRVFK 601
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R +VD A L ANK LK I T+N++L + DK + +FR + + +++P +
Sbjct: 204 RAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMD-QCSVAPDV 262
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
++N LI F R+ V+ ++E++ ++P+V +++ LI + T +
Sbjct: 263 RSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLRE 322
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNL 312
MK ++PD Y +++ G+ +G++
Sbjct: 323 MKGLGLVPDGVIYTMVIGGFCRAGSM 348
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/356 (18%), Positives = 135/356 (37%), Gaps = 52/356 (14%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
++N L+G + G ++ ++++++ ++P +V+++ LI +F +DH A +E
Sbjct: 264 SFNILIGGFCRVGEVEEAMKFYKEMQQRG-VTPDVVSFSCLIGLFSTRGKMDHAAAYLRE 322
Query: 252 IKDSNLSPN-----------------------------------VFTYNYLIAGYMTAWM 276
+K L P+ V TYN L+ G
Sbjct: 323 MKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHR 382
Query: 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336
EE+ MK V PD T+ L+ GY GN + ++++ + H +R
Sbjct: 383 LLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQ-------RLRP 435
Query: 337 MICAYSK-----CSVTDRIKKIEALMRLIPEKEYRP--WLNVLLIRVYAKEDCLEEMEKS 389
+ AY+ C D + K L + +E P +LI + ++ +EE
Sbjct: 436 DVVAYNSLIDGMCRKGD-LAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGF 494
Query: 390 INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYA 449
+ D K ++ + I+ Y R V K F+++ +++ + Y
Sbjct: 495 L-DEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYI 553
Query: 450 SQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505
+ + +V ME + T+ ++ ++ G + +V M +G +
Sbjct: 554 KEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIE 609
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
T N ++ +Y + DK ++ +++K + P +VT+N LI R VD A
Sbjct: 159 TLNIMVHSYCKSLEFDKADTVISEMEKRC-VFPDVVTHNVLIDARFRAGDVDAAIALVDS 217
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ + L P + T+N ++ G + K +E+++ M V PD ++ +L+ G+ G
Sbjct: 218 MANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGE 277
Query: 312 LPRMEKIYE 320
+ K Y+
Sbjct: 278 VEEAMKFYK 286
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 2/157 (1%)
Query: 168 RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226
R N + A LF ++ L+ + YN+L+ G K L+ D+ I P+
Sbjct: 414 RDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAR-EIFPNH 472
Query: 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286
VTY+ LI V+ E+ PN+ TYN +I GY + K ++ Q
Sbjct: 473 VTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQK 532
Query: 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
M ++PD T+ L+ GY N+ ++ +++
Sbjct: 533 MMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIME 569
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 105/261 (40%), Gaps = 31/261 (11%)
Query: 31 PPLSVFTLTKSPNHSFTRDLCAPATHTVFPTLV--RLLSETLTYP---DARVRKDLTQTV 85
P L FT H + RD +F TL+ RL + + Y D RK
Sbjct: 400 PDLCTFTTLI---HGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKA 456
Query: 86 SALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRR 145
+ L D++ A + V + C + + F++ M G+ P ++ +
Sbjct: 457 NELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLP----NIMTYNS 512
Query: 146 RQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL 205
GY KG +F ++ ++ DL T+N L+ Y+
Sbjct: 513 IIKGY---CRSGNVKKGQQFLQKMMQDNILPDLI------------TFNTLIHGYIKEEN 557
Query: 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265
++F ++KE + P VTYN +I+ F ++ F+++ S + P+ +TY
Sbjct: 558 MHGAFNVFNIMEKEM-VQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYM 616
Query: 266 YLIAGYMTAWMWGKVEEIYQM 286
LI G++TA G +E +Q+
Sbjct: 617 SLINGHVTA---GNSKEAFQL 634
>gi|449463623|ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Cucumis sativus]
Length = 580
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 79/176 (44%), Gaps = 3/176 (1%)
Query: 148 AGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSD 207
A G P T Y + F V D A + + +Y L+ AY +
Sbjct: 273 AARGVPQTTVTYNSLMSFETNYKEVSKIYDQMQRAGLQ--PDVVSYALLISAYGKARREE 330
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
+ ++F ++ +A I P+ YN L+ F +V+ + F+ +K SP++ +Y +
Sbjct: 331 EALAVFEEML-DAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTM 389
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
++ Y+ A E ++ +K P+ TY L++GYA NL +M K YE +K
Sbjct: 390 LSAYVNASDMEGAENFFRRLKQDGFRPNVVTYGTLIKGYAKINNLEKMIKRYEEMK 445
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/315 (20%), Positives = 135/315 (42%), Gaps = 51/315 (16%)
Query: 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS 255
L+ AY G ++ + + + K+ +P++V++ L+ +GR ++ EA F+ ++
Sbjct: 144 LITAYGKLGDFNRAEKVLNLMNKKG-YAPNVVSHTALMEAYGRGRRYNNAEAIFRRMQSG 202
Query: 256 NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM--KAGPVM-PDTNTYLLLLRGYAHSGNL 312
P+ TY ++ ++ + + EE++ + K PV+ PD + +++ + +GN
Sbjct: 203 GPEPSALTYQIMLKTFVEGSKFKEAEELFDSLLNKEKPVLKPDQKMFHMIIYMFKKAGNY 262
Query: 313 PRMEKIY-ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL-- 369
+ K++ E+ V + + S S K++ + + +P +
Sbjct: 263 EKARKVFAEMAARGVP-------QTTVTYNSLMSFETNYKEVSKIYDQMQRAGLQPDVVS 315
Query: 370 NVLLIRVYAK----EDCL---EEM--------EKSIN---DAFEHKTSVTTVRIM----- 406
LLI Y K E+ L EEM K+ N DAF V +I+
Sbjct: 316 YALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSMK 375
Query: 407 --RC---------IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVE 455
RC ++S+Y + ++ NF +R + G+R Y + + YA ++
Sbjct: 376 RDRCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQDGFRPNVVTYGTLIKGYA---KIN 432
Query: 456 EMESVLKEMENYKID 470
+E ++K E K++
Sbjct: 433 NLEKMIKRYEEMKVN 447
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 77/415 (18%), Positives = 159/415 (38%), Gaps = 63/415 (15%)
Query: 93 LANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGT 152
L + + +KV ++++KG N + LM+ G R +RR Q+G
Sbjct: 151 LGDFNRAEKVLNLMNKKGYA-----PNVVSHTALMEAYGRGRRYNNAEAIFRRMQSGGPE 205
Query: 153 P------MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMY---- 202
P + + + +G KF A +LF NK + + +Y
Sbjct: 206 PSALTYQIMLKTFVEGSKFKE-------AEELFDSLLNKEKPVLKPDQKMFHMIIYMFKK 258
Query: 203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF 262
G +K + +F ++ + + VTYN+L+S V + + +++ + L P+V
Sbjct: 259 AGNYEKARKVFAEMAARG-VPQTTVTYNSLMSFETNYKEVSKI---YDQMQRAGLQPDVV 314
Query: 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
+Y LI+ Y A + +++ M + P Y +LL +A SG + + + +++ +
Sbjct: 315 SYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFKSM 374
Query: 323 KHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC 382
K + M+ AY S ++ E R + + +RP NV+ Y
Sbjct: 375 KRDRCSPDICSYTTMLSAYVNAS---DMEGAENFFRRLKQDGFRP--NVV---TYG---- 422
Query: 383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYH 442
++ Y + N ++K+ + + G R+ +++
Sbjct: 423 -------------------------TLIKGYAKINNLEKMIKRYEEMKVNGIRVNQTILT 457
Query: 443 SKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLG 497
+ M Y + E+E+ + +K I+ T + + NQ++G
Sbjct: 458 TIMDAYGKNKDFGSAVIWFNEIESCGLRPDQKAKNILLSLAKTAEELDEANQLVG 512
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 52/282 (18%), Positives = 112/282 (39%), Gaps = 20/282 (7%)
Query: 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291
LI+ +G+L + E + +PNV ++ L+ Y + E I++ M++G
Sbjct: 144 LITAYGKLGDFNRAEKVLNLMNKKGYAPNVVSHTALMEAYGRGRRYNNAEAIFRRMQSGG 203
Query: 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA-------MICAYSKC 344
P TY ++L+ + E++++ + + KE P+++ +I + K
Sbjct: 204 PEPSALTYQIMLKTFVEGSKFKEAEELFDSLLN----KEKPVLKPDQKMFHMIIYMFKKA 259
Query: 345 SVTDRIKKIEALM--RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTT 402
++ +K+ A M R +P+ V + + E +E+ K I D +
Sbjct: 260 GNYEKARKVFAEMAARGVPQ------TTVTYNSLMSFETNYKEVSK-IYDQMQRAGLQPD 312
Query: 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
V ++S+Y + ++ + AG R Y+ + +A VE+ + V K
Sbjct: 313 VVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNILLDAFAISGMVEQAKIVFK 372
Query: 463 EMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
M+ + ++ M AY + ++G+
Sbjct: 373 SMKRDRCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQDGF 414
>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
Length = 497
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 120/303 (39%), Gaps = 46/303 (15%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN+L+ N D+ Q LF +K SPS+VTYNTL+ R ++ A FQE
Sbjct: 12 TYNSLIDGLCKNNEPDRAQELFEHMKS-VECSPSMVTYNTLLDGLFRTGKLERAMALFQE 70
Query: 252 I---------------------------------KDSNLSPNVFTYNYLIAGYMTAWMWG 278
+ D SPNV TY+ LI G A
Sbjct: 71 MLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDGLCKANRVS 130
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP-LIRAM 337
+ E+ + MKA PD TY +L+ G ++ +E+++ +D P L+
Sbjct: 131 QAVELLESMKARGCSPDVITYTILVDGLCKE---SKVAAAWEVLREMLDAGCVPNLVTYN 187
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL----LIRVYAKEDCLEEMEKSINDA 393
+ C R+ ALMR + + P NV+ LI K +++ + D
Sbjct: 188 SLLHGLCRAR-RVSDALALMRDMTCRGCTP--NVVTYGTLIDGLCKVGRVKDACAMLADM 244
Query: 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453
+ K + I +++ + + VD+ ++RA S G + Y S + R
Sbjct: 245 ID-KGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNR 303
Query: 454 VEE 456
++E
Sbjct: 304 LDE 306
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 3/164 (1%)
Query: 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKC 209
G P Y+ I + VD A DL+ + TY+ L+ G D+
Sbjct: 318 GCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEA 377
Query: 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269
L + + PS +TYN+LI L +D +E++ SN +P+ TYN LI
Sbjct: 378 HLLLARMVRMGT-PPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIH 436
Query: 270 GYM-TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
G + + +Q M V+PD TY +LL G S +L
Sbjct: 437 GMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGLKKSKDL 480
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 34/208 (16%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169
G C RR S+ A + M G P + YGT G+ GR+
Sbjct: 192 GLCRARRVSDALALMRDMTCRGCTPNVVT-----------YGT------LIDGLCKVGRV 234
Query: 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL--SDKCQSLFRDLKK--EANISPS 225
+ A + A+ +K GT + ++ + NGL +D+ L++ I P
Sbjct: 235 KD---ACAMLADMIDKG----GTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPD 287
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE--- 282
+VTY+++I R +D +K P+V Y+ LI G A GKV+E
Sbjct: 288 VVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKA---GKVDEAFD 344
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+Y++M D TY L+ G +G
Sbjct: 345 LYEVMTGDGCDADVVTYSTLIDGLCKAG 372
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
Query: 192 TYNALL-GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQ 250
TYN+LL G +SD +L RD+ +P++VTY TLI ++ V A
Sbjct: 185 TYNSLLHGLCRARRVSDA-LALMRDMTCRG-CTPNVVTYGTLIDGLCKVGRVKDACAMLA 242
Query: 251 EIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
++ D +P++ YN LI G A + + + +G + PD TY ++ G S
Sbjct: 243 DMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSN 302
Query: 311 NLPRMEKIYELVK 323
L ++ VK
Sbjct: 303 RLDEACRLLLYVK 315
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
++D PNV TYN LI G + +E+++ MK+ P TY LL G +G
Sbjct: 1 MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTG- 59
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++E+ L + +D + +I I C R KIE + + + R NV
Sbjct: 60 --KLERAMALFQEMLDRRSHDVISFNILVTGLC----RAGKIETALEFFRKMDDRCSPNV 113
Query: 372 L 372
+
Sbjct: 114 I 114
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/232 (21%), Positives = 85/232 (36%), Gaps = 23/232 (9%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRL------------------ALEVLNWRRRQAGYG 151
G C R S +E MK G P + A EVL
Sbjct: 122 GLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVP 181
Query: 152 TPMTKEEYTKGIKFAGRINN-VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210
+T G+ A R+++ + L D+ ++ T GT + G + D C
Sbjct: 182 NLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTL--IDGLCKVGRVKDACA 239
Query: 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270
L + K +P ++ YN LI+ + VD A + + P+V TY+ +I G
Sbjct: 240 MLADMIDKGG--TPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYG 297
Query: 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322
+ + + +K+ PD Y L+ G +G + +YE++
Sbjct: 298 LCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVM 349
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 15/172 (8%)
Query: 159 YTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALL-GAYMYNGLSDKCQSLFRDL 216
Y I + + VD + L A + +K + TY++++ G N L + C+ L
Sbjct: 256 YNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLL--Y 313
Query: 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276
K P ++ Y+TLI + VD ++ + +V TY+ LI G A
Sbjct: 314 VKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKA-- 371
Query: 277 WGKVEEIY----QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324
G+V+E + +M++ G P T TY L++G +L +++ ELV+
Sbjct: 372 -GRVDEAHLLLARMVRMG-TPPSTMTYNSLIKGLC---DLNHLDEAIELVEE 418
>gi|410110127|gb|AFV61143.1| pentatricopeptide repeat-containing protein 123, partial [Lippia
origanoides]
Length = 408
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 139 ALSVFSEMREIKCLLDLXTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 197
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M++ +
Sbjct: 198 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIE 257
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 258 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 317
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/296 (18%), Positives = 118/296 (39%), Gaps = 3/296 (1%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TY+ L+ + GL D S + ++++ + +V Y+ LI + +L + F
Sbjct: 17 TYSTLITHFGKEGLFDAALSWLQKMEQD-RVPGDLVLYSNLIELSRKLCDYSKAISIFSR 75
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+K S +P++ YN +I + A ++ + + MK VMP+T +Y LL Y +
Sbjct: 76 LKRSGFTPDLVAYNAMINVFGKAKLFREARSLISEMKTAGVMPNTTSYSTLLXMYVENKK 135
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371
++ ++ + MI Y + + K+ MR + + N
Sbjct: 136 FLEALSVFSEMREIKCLLDLXTCNIMIDVYGQLGMAKEADKLFWGMRKMGIEPNVVSYNT 195
Query: 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431
LL RVY + E + + K V ++ Y + +K N ++ +S
Sbjct: 196 LL-RVYGDAELFGE-AIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQS 253
Query: 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG 487
G Y + + ++ +++ + +++ + ++ + F M AY G
Sbjct: 254 RGIEPNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAG 309
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 80/166 (48%), Gaps = 22/166 (13%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 203 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG-IEPN 259
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + + +I Y A + + +
Sbjct: 260 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLH 319
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330
+K +P DT ++L A +G R+E+ + + VD E
Sbjct: 320 ELKRPDNIPRDTAIHIL-----AGAG---RIEEATYVFRQAVDAGE 357
>gi|356562139|ref|XP_003549331.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
chloroplastic-like [Glycine max]
Length = 689
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/339 (22%), Positives = 145/339 (42%), Gaps = 17/339 (5%)
Query: 64 RLLSETLTYPDARVRKDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAF 123
R++ L Y R+R + + ++ DLD + ++ DE R + ++
Sbjct: 147 RVVPFVLNYFQRRIRPTREVILYNVTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVSFST 206
Query: 124 VELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAA 183
+ ++ S P A+E W + + Y+ I GR N+D+A L+ A
Sbjct: 207 IISCARICSLPNKAVE---WFEKMPSFRCEPDDVTYSAMIDAYGRAGNIDMALRLYDRAR 263
Query: 184 NKHLKTIG-TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242
+ + T++ L+ Y G D C ++++++K + ++V YNTL+ GR
Sbjct: 264 TEKWRLDSVTFSTLIKMYGLAGNYDGCLNVYQEMKA-LGVKSNMVIYNTLLDAMGRAKRP 322
Query: 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302
++ + E+ ++ PN TY L+ Y +Y+ MK + +T+ Y L
Sbjct: 323 WQAKSIYTEMTNNGFLPNWATYASLLRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTL 382
Query: 303 LRGYAHSGNLPRMEKIYELVKHHV----DGKEFPLIRAMICAYSKCSVTDRIKKIEALMR 358
L A G KI+E +K D F ++I YS CS + + E ++
Sbjct: 383 LAMCADLGLADDAFKIFEDMKSSATCLCDSWTF---SSLITIYS-CS--GNVSEAERMLN 436
Query: 359 LIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAFE 395
+ E ++P + VL L++ Y K +++ K+ N +
Sbjct: 437 EMIESGFQPTIFVLTSLVQCYGKVGRTDDVLKTFNQLLD 475
Score = 43.1 bits (100), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 53/283 (18%), Positives = 111/283 (39%), Gaps = 9/283 (3%)
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
++ YN + VF + +D ME F E+ + P+ +++ +I+ + K E ++
Sbjct: 166 VILYNVTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVSFSTIISCARICSLPNKAVEWFE 225
Query: 286 MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV---KHHVDGKEFPLIRAMICAYS 342
M + PD TY ++ Y +GN+ ++Y+ K +D F +I Y
Sbjct: 226 KMPSFRCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDSVTF---STLIKMYG 282
Query: 343 KCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTT 402
D + M+ + K N LL + + + KSI + +
Sbjct: 283 LAGNYDGCLNVYQEMKALGVKSNMVIYNTLLDAMGRAKRPWQ--AKSIYTEMTNNGFLPN 340
Query: 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462
++ +Y R + K + G + LY++ + M A ++ + +
Sbjct: 341 WATYASLLRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLADDAFKIFE 400
Query: 463 EMENYKID-CSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504
+M++ C TF + Y+ G + ++L M ++G+
Sbjct: 401 DMKSSATCLCDSWTFSSLITIYSCSGNVSEAERMLNEMIESGF 443
>gi|356526063|ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like isoform 1 [Glycine max]
gi|356526065|ref|XP_003531640.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like isoform 2 [Glycine max]
Length = 522
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 89/199 (44%), Gaps = 3/199 (1%)
Query: 126 LMKQLGSRPRLAL-EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAAN 184
L + L S P L + L + R +P+ + K + + + L E
Sbjct: 126 LTQTLSSHPPHTLFDALLFSYRLCNSSSPLVFDSLFKTLAHTNKFRHATHIYTLMKEHGF 185
Query: 185 KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDH 244
T+ + NA L + + +D + +R++++ + +SP++ T N +I + L V
Sbjct: 186 S--PTVQSCNAFLSSLLRLRRADIALAFYREIRRRSCVSPNVYTLNMIIRAYCMLGEVQK 243
Query: 245 MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304
+++ D LSPNV ++N LI+GY ++G ++ +M V P+ T+ L+
Sbjct: 244 GFDMLEKMMDMGLSPNVVSFNTLISGYCNKGLFGLALKVKSLMVENGVQPNVVTFNTLIN 303
Query: 305 GYAHSGNLPRMEKIYELVK 323
G+ L +++ +K
Sbjct: 304 GFCKERKLHEANRVFNEMK 322
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 19/163 (11%)
Query: 168 RINNVDLAADLFAEAANKHLKTIGTY--NALLGAYMYNGLSDKCQSLFRDLKK--EANIS 223
R+ D+A + E + + Y N ++ AY G + Q F L+K + +S
Sbjct: 201 RLRRADIALAFYREIRRRSCVSPNVYTLNMIIRAYCMLG---EVQKGFDMLEKMMDMGLS 257
Query: 224 PSIVTYNTLIS------VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
P++V++NTLIS +FG L V + + ++ + PNV T+N LI G+
Sbjct: 258 PNVVSFNTLISGYCNKGLFGLALKVKSL------MVENGVQPNVVTFNTLINGFCKERKL 311
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ ++ MK V P TY LL GY G+ ++YE
Sbjct: 312 HEANRVFNEMKVANVDPSVVTYNTLLNGYGQVGDSEMGVRVYE 354
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
++N L+ Y GL + + L E + P++VT+NTLI+ F + + F E
Sbjct: 262 SFNTLISGYCNKGLFGLALKV-KSLMVENGVQPNVVTFNTLINGFCKERKLHEANRVFNE 320
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+K +N+ P+V TYN L+ GY +Y+ M + D TY L+ G G
Sbjct: 321 MKVANVDPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMRNGLKADILTYNALILGLCKDG 379
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 8/148 (5%)
Query: 167 GRINNVDLAADLFAEAANKHLKT-IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
G++ + ++ ++ E LK I TYNAL+ +G + K R+L KE N+ P+
Sbjct: 341 GQVGDSEMGVRVYEEMMRNGLKADILTYNALILGLCKDGKTKKAAGFVRELDKE-NLVPN 399
Query: 226 IVTYNTLISVFGRLLLVDHMEAAF---QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282
T++ LI+ G+ + ++ E AF + + S SPN T+ LI+ + + +
Sbjct: 400 ASTFSALIT--GQ-CVRNNSERAFLIYRSMVRSGCSPNGQTFQMLISAFCKNEDFDGAVQ 456
Query: 283 IYQMMKAGPVMPDTNTYLLLLRGYAHSG 310
+ + M + PD +T L G G
Sbjct: 457 VLRDMLGRLMSPDLSTMSELCDGLCRCG 484
>gi|242054629|ref|XP_002456460.1| hypothetical protein SORBIDRAFT_03g036710 [Sorghum bicolor]
gi|241928435|gb|EES01580.1| hypothetical protein SORBIDRAFT_03g036710 [Sorghum bicolor]
Length = 439
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 11/165 (6%)
Query: 163 IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLK-KEAN 221
++ G + AA +F KH K++ T+NALL AY+ D + F+ +
Sbjct: 115 VRLCGGASMPSHAAAIFHGLPPKH-KSVMTFNALLAAYVDASDFDALTTTFQQIPASHPT 173
Query: 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEI---KDSNLSPNVFTYNYLIAGYMTAWMWG 278
I P++ +YN LIS L + AA I + +SP++ ++N L+ G+ +
Sbjct: 174 IIPTVYSYNILISA---LCQKPELSAALDVIALMEKRGVSPDIISFNILLNGFYNNDSFD 230
Query: 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323
E++++MMK + PD +Y LRG G R+E L++
Sbjct: 231 DAEKVWEMMKERNIEPDEKSYNAKLRGLVSQG---RVEDAVALIE 272
>gi|296084249|emb|CBI24637.3| unnamed protein product [Vitis vinifera]
Length = 242
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%)
Query: 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256
L G D +F ++KE P + Y+ +I + G+ L++ E F E+K
Sbjct: 90 LAELQRQGELDLTLKVFEFIRKEVWYKPDLSLYSDMIMILGKKKLIEMAEGLFSELKKEG 149
Query: 257 LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
L P+ Y +I Y+ M K E+Y +MKA PD T +L+R ++G
Sbjct: 150 LEPDTRVYTEMIGAYLQVGMTEKAMEMYGLMKASGCAPDKLTLTILIRNLENAGE 204
>gi|302781402|ref|XP_002972475.1| hypothetical protein SELMODRAFT_97561 [Selaginella moellendorffii]
gi|300159942|gb|EFJ26561.1| hypothetical protein SELMODRAFT_97561 [Selaginella moellendorffii]
Length = 406
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 5/161 (3%)
Query: 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANK-HLKTIGTYNALLGAYMYNGLSDKCQS 211
P + + +GRI+ +A++ N HL G YN L+ +
Sbjct: 187 PKSYRVLVEAFAVSGRIDEAFGFVQRYADSENAPHL---GAYNTLMNRLGKANKAHAALE 243
Query: 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271
+F +K N P +VTYN LI + G++ +D + +Q+++ + P++F+YN L+
Sbjct: 244 IFYKIKDRPNYKPDLVTYNVLIDLLGKVGKIDECWSCYQKMR-LHFQPDIFSYNTLLGRL 302
Query: 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL 312
A + M V D TY +L+ GYA +GNL
Sbjct: 303 GRAGRVDLFASVLDDMSRDGVQQDRITYAILVEGYARAGNL 343
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 8/175 (4%)
Query: 122 AFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLF 179
A+ LM +LG ++ ALE+ + + Y + Y I G++ +D +
Sbjct: 224 AYNTLMNRLGKANKAHAALEIFYKIKDRPNYKPDLVT--YNVLIDLLGKVGKIDECWSCY 281
Query: 180 AEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239
+ I +YN LLG G D S+ D+ ++ + +TY L+ + R
Sbjct: 282 QKMRLHFQPDIFSYNTLLGRLGRAGRVDLFASVLDDMSRDG-VQQDRITYAILVEGYARA 340
Query: 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA---GP 291
+D A +E+K S SP L+ + A +G E + Q M A GP
Sbjct: 341 GNLDVALAYLEEMKSSGFSPTPSALEVLVNSLLKAGRFGAAEAVVQEMAAINGGP 395
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 4/156 (2%)
Query: 167 GRINNVDLAADLFAEAANK--HLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP 224
G+ N A ++F + ++ + + TYN L+ G D+C S ++ ++ + P
Sbjct: 233 GKANKAHAALEIFYKIKDRPNYKPDLVTYNVLIDLLGKVGKIDECWSCYQKMR--LHFQP 290
Query: 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284
I +YNTL+ GR VD + ++ + + TY L+ GY A
Sbjct: 291 DIFSYNTLLGRLGRAGRVDLFASVLDDMSRDGVQQDRITYAILVEGYARAGNLDVALAYL 350
Query: 285 QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320
+ MK+ P + +L+ +G E + +
Sbjct: 351 EEMKSSGFSPTPSALEVLVNSLLKAGRFGAAEAVVQ 386
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 93/216 (43%), Gaps = 13/216 (6%)
Query: 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277
+E I + VTY L+ ++ +V+ F +++ S + P + Y+Y++ +
Sbjct: 5 EEQMIPMTYVTYRILLRIYVDASMVEDALETFHKMEFSEIKPTLDDYHYIMFKLIRLKCP 64
Query: 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337
V I++ M+ V P+T TY L+ G + + +K + D EF A+
Sbjct: 65 RVVPMIFESMRKNLVRPNTQTYNFLISSLCSLGKMAEARWRFSYMKKYCDPDEFTYA-AL 123
Query: 338 ICAYSKCSVTDRIKKIEALMRLIPE---KEYRPWLNV--LLIRVYAKEDCLEEMEKSIND 392
I + KC T E + L+ E + RP L + +++ +++ E++
Sbjct: 124 INGFCKCMDT------EVTLELLEEMLARGLRPNLALFNMMMDAHSRSGKHEQVIALFER 177
Query: 393 AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKR 428
EH+ + R +V ++ +D+ FV+R
Sbjct: 178 MVEHECR-PDPKSYRVLVEAFAVSGRIDEAFGFVQR 212
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 5/145 (3%)
Query: 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251
TYN L+ + G + + F +KK + P TY LI+ F + + + +E
Sbjct: 85 TYNFLISSLCSLGKMAEARWRFSYMKKYCD--PDEFTYAALINGFCKCMDTEVTLELLEE 142
Query: 252 IKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311
+ L PN+ +N ++ + + +V +++ M PD +Y +L+ +A SG
Sbjct: 143 MLARGLRPNLALFNMMMDAHSRSGKHEQVIALFERMVEHECRPDPKSYRVLVEAFAVSG- 201
Query: 312 LPRMEKIYELVKHHVDGKEFPLIRA 336
R+++ + V+ + D + P + A
Sbjct: 202 --RIDEAFGFVQRYADSENAPHLGA 224
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 126/294 (42%), Gaps = 30/294 (10%)
Query: 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248
++ TYNAL+ + G + ++ D+K E +SP +V+Y+T++S F R VD
Sbjct: 414 SVVTYNALINGHCVTGKMEDAIAVLEDMK-EKGLSPDVVSYSTVLSGFCRSYDVDEALRV 472
Query: 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308
+E+ + + P+ TY+ LI G+ + ++Y+ M + PD TY L+ Y
Sbjct: 473 KREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCM 532
Query: 309 SGNLPRMEKIYELVKHHVDGKEFPLI---RAMICAYSKCSVTDRIKKIEALMRLIPEKE- 364
G+L EK +L V+ P + +I +K S T K++ L++L E+
Sbjct: 533 EGDL---EKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRL--LLKLFYEESV 587
Query: 365 -----YRPWL----NVLLIRVYA--KEDCLEEMEKSINDAFE------HKTSVTTVRIMR 407
Y + N+ V + K C++ M + FE HK T IM
Sbjct: 588 PSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIM- 646
Query: 408 CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVL 461
+ + R + K K +G+ L + + + +V E+ SV+
Sbjct: 647 --IHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVI 698
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 3/156 (1%)
Query: 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTY 229
N+ A ++F E + + TYN L+ + + G D +LF ++ + + P++VTY
Sbjct: 185 NISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCL-PNVVTY 243
Query: 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289
NTLI + +L +D + + L PN+ +YN +I G +V + M
Sbjct: 244 NTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNR 303
Query: 290 GPVMPDTNTYLLLLRGYAHSGNLPRMEKIY-ELVKH 324
D TY L++GY GN + ++ E+++H
Sbjct: 304 RGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRH 339
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 79/361 (21%), Positives = 140/361 (38%), Gaps = 18/361 (4%)
Query: 161 KGIKFAGRINNVDLAADLFAEAANKH-LKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219
+G FAG N+D+A LF + K L + TYN L+ Y D L R + +
Sbjct: 213 RGFCFAG---NIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALK 269
Query: 220 ANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279
+ P++++YN +I+ R + + E+ S + TYN LI GY + +
Sbjct: 270 G-LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQ 328
Query: 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339
++ M + P TY L+ +GN+ R + + ++ V G P R
Sbjct: 329 ALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR--VRGL-CPNERTYTT 385
Query: 340 AYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV--LLIRVYAKEDCLEEMEKSINDAFEHK 397
S + + ++R + + + P + LI + +E+ + D E
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445
Query: 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEM 457
S V ++S + R VD+ + G + Y S + + QRR +E
Sbjct: 446 LSPDVVS-YSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEA 504
Query: 458 ESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG-------YDVPVNA 510
+ +EM + + T+ + AY G K Q+ M + G Y V +N
Sbjct: 505 CDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLING 564
Query: 511 F 511
Sbjct: 565 L 565
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 23/219 (10%)
Query: 110 GSCLFRRHSNGYAFVELMKQLGSRPRLAL--EVLNW-----RRRQAGY--------GTPM 154
G C R+ +G+ + M G P L V+N R ++ + G +
Sbjct: 249 GYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSL 308
Query: 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLF 213
+ Y IK + N A + AE L ++ TY +L+ + G ++ F
Sbjct: 309 DEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAME-F 367
Query: 214 RDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273
D + + P+ TY TL+ F + ++ +E+ D+ SP+V TYN LI G+
Sbjct: 368 LDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGH-- 425
Query: 274 AWMWGKVEE---IYQMMKAGPVMPDTNTYLLLLRGYAHS 309
+ GK+E+ + + MK + PD +Y +L G+ S
Sbjct: 426 -CVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRS 463
>gi|410110063|gb|AFV61111.1| pentatricopeptide repeat-containing protein 123, partial [Aloysia
barbata]
Length = 364
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 2/180 (1%)
Query: 175 AADLFAEAAN-KHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233
A +F+E K L + T N ++ Y G++ + LF ++K I P++V+YNTL+
Sbjct: 76 ALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLFWGMRK-MGIEPNVVSYNTLL 134
Query: 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293
V+G L F+ ++ N+ NV TYN ++ Y K + Q M++ +
Sbjct: 135 RVYGDAELFGEAIHLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRGIE 194
Query: 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353
P++ TY ++ + G L R +++ ++ + L + MI AY + + K++
Sbjct: 195 PNSITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRL 254
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 109/235 (46%), Gaps = 34/235 (14%)
Query: 176 ADLFAEAANKHL----------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS 225
A+LF EA HL + + TYN+++ Y +K +L ++++ I P+
Sbjct: 140 AELFGEAI--HLFRLMQRKNIEQNVVTYNSMMMIYGKTLEHEKANNLIQEMQSRG-IEPN 196
Query: 226 IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285
+TY+T+IS++G++ +D FQ+++ S + + + +I Y A + + +
Sbjct: 197 SITYSTIISIWGKVGKLDRAAMLFQKLRSSGVEIDQILFQTMIVAYERAGLVAHAKRLLH 256
Query: 286 MMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDG---KEFPLIRAMICAY 341
+K +P DT ++L A +G R+E+ + + +D K+ + MI
Sbjct: 257 ELKRPDNIPRDTAIHIL-----AGAG---RIEEATYVFRQAIDAGEVKDITVFERMIHLL 308
Query: 342 SKCSVTDRIKKIEALMRLIPEKEYRPWLNVL--LIRVYAKEDCLEEMEKSINDAF 394
SK + ++ MR + Y P NV+ ++ Y K L E +K+ ND +
Sbjct: 309 SKYKKYSNVXEVFDKMRGLG---YFPDSNVIAVVLNAYGK---LXEFDKA-NDVY 356
Score = 46.2 bits (108), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267
K S+F LK+ + +P +V YN +I+VFG+ L + E+K + + PN +Y+ L
Sbjct: 5 KAISIFSRLKR-SGFTPDLVAYNAMINVFGKAKLFREARSLISEMKXAGVMPNTTSYSTL 63
Query: 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIY 319
+ Y+ + + ++ M+ + D T +++ Y G +K++
Sbjct: 64 LTMYVENKKFLEALSVFSEMREIKCLLDLTTCNIMIDVYGQLGMAKEADKLF 115
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,648,210,898
Number of Sequences: 23463169
Number of extensions: 303341153
Number of successful extensions: 824700
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3861
Number of HSP's successfully gapped in prelim test: 3591
Number of HSP's that attempted gapping in prelim test: 768004
Number of HSP's gapped (non-prelim): 37305
length of query: 513
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 366
effective length of database: 8,910,109,524
effective search space: 3261100085784
effective search space used: 3261100085784
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)