BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010320
         (513 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PS0|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Cinnamyl
           Alcohol Dehydrogenase From Saccharomyces Cerevisiae
 pdb|1Q1N|A Chain A, Apo And Holo Structures Of An Nadp(h)-dependent Cinnamyl
           Alcohol Dehydrogenase From Saccharomyces Cerevisiae
 pdb|1PIW|A Chain A, Apo And Holo Structures Of An Nadp(H)-Dependent Cinnamyl
           Alcohol Dehydrogenase From Saccharomyces Cerevisiae
 pdb|1PIW|B Chain B, Apo And Holo Structures Of An Nadp(H)-Dependent Cinnamyl
           Alcohol Dehydrogenase From Saccharomyces Cerevisiae
          Length = 360

 Score = 29.6 bits (65), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 345 SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKS 389
           S    IK++  L++L+ EK+ + W+  L +      +  E MEK 
Sbjct: 299 SALGSIKELNQLLKLVSEKDIKIWVETLPVGEAGVHEAFERMEKG 343


>pdb|2IX2|C Chain C, Crystal Structure Of The Heterotrimeric Pcna From
          Sulfolobus Solfataricus
          Length = 259

 Score = 29.3 bits (64), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 59 FPTLVRLLSETLTYPDARVRKDLTQTVSALRDE 91
          F   +RL++  + Y D RV KD+ Q ++ L DE
Sbjct: 7  FERNIRLINMKVVYDDVRVLKDIIQALARLVDE 39


>pdb|1MIO|C Chain C, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
           Protein From Clostridium Pasteurianum At 3.0 Angstroms
           Resolution
 pdb|1MIO|A Chain A, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
           Protein From Clostridium Pasteurianum At 3.0 Angstroms
           Resolution
          Length = 533

 Score = 28.5 bits (62), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 83  QTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG 131
           +T   + +E+ A  DDLD     L  K +CL+   S  + ++ ++K  G
Sbjct: 310 RTEEVIAEEIAAIQDDLDYFKEKLQGKTACLYVGGSRSHTYMNMLKSFG 358


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,667,517
Number of Sequences: 62578
Number of extensions: 581678
Number of successful extensions: 1800
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1797
Number of HSP's gapped (non-prelim): 8
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)