Query 010320
Match_columns 513
No_of_seqs 525 out of 2831
Neff 11.1
Searched_HMMs 46136
Date Thu Mar 28 23:09:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.1E-60 2.3E-65 495.1 52.3 408 92-513 415-852 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 5.5E-60 1.2E-64 489.8 51.5 416 84-513 372-794 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.6E-57 3.6E-62 468.9 44.5 405 84-512 89-532 (697)
4 PLN03081 pentatricopeptide (PP 100.0 9.8E-56 2.1E-60 455.8 45.0 371 115-508 153-563 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 9.5E-56 2.1E-60 466.6 45.8 383 116-512 183-629 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.3E-54 2.8E-59 458.0 42.1 428 60-512 226-661 (857)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 4.8E-22 1E-26 214.5 49.9 332 156-500 567-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 2.7E-21 5.9E-26 208.7 51.2 356 132-504 513-868 (899)
9 PRK11788 tetratricopeptide rep 99.9 4E-21 8.7E-26 186.3 35.8 301 165-509 44-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 5E-20 1.1E-24 178.7 34.6 303 124-474 41-354 (389)
11 PRK15174 Vi polysaccharide exp 99.9 7E-18 1.5E-22 171.8 41.1 323 131-468 55-382 (656)
12 TIGR00990 3a0801s09 mitochondr 99.9 3.2E-17 6.9E-22 167.5 45.3 359 131-502 140-571 (615)
13 PRK15174 Vi polysaccharide exp 99.9 5.5E-17 1.2E-21 165.3 43.1 290 131-433 89-382 (656)
14 PRK11447 cellulose synthase su 99.8 3.8E-15 8.2E-20 162.3 49.2 328 165-507 360-746 (1157)
15 KOG4422 Uncharacterized conser 99.8 1.7E-15 3.8E-20 135.4 37.5 342 152-504 203-592 (625)
16 PRK11447 cellulose synthase su 99.8 4.4E-15 9.5E-20 161.8 48.6 329 163-503 276-701 (1157)
17 KOG4626 O-linked N-acetylgluco 99.8 3.7E-16 8.1E-21 145.8 33.8 408 79-511 113-535 (966)
18 PRK10049 pgaA outer membrane p 99.8 9.9E-15 2.1E-19 152.1 48.4 393 94-502 26-456 (765)
19 KOG4626 O-linked N-acetylgluco 99.8 3.7E-16 8E-21 145.8 32.1 337 155-508 115-489 (966)
20 TIGR00990 3a0801s09 mitochondr 99.8 4.3E-14 9.4E-19 144.6 43.2 337 158-503 129-538 (615)
21 KOG4422 Uncharacterized conser 99.7 3.1E-14 6.7E-19 127.5 33.6 375 122-507 118-556 (625)
22 PRK10049 pgaA outer membrane p 99.7 1.4E-12 3.1E-17 136.0 46.8 365 91-474 57-461 (765)
23 PRK14574 hmsH outer membrane p 99.7 3.7E-12 8.1E-17 130.7 47.7 393 94-501 45-512 (822)
24 PRK14574 hmsH outer membrane p 99.7 4.9E-12 1.1E-16 129.8 44.9 370 117-502 33-479 (822)
25 PRK10747 putative protoheme IX 99.7 2E-12 4.2E-17 124.5 35.7 283 169-500 97-388 (398)
26 TIGR00540 hemY_coli hemY prote 99.6 7.5E-12 1.6E-16 121.2 38.9 131 159-293 85-219 (409)
27 PF13429 TPR_15: Tetratricopep 99.6 8.7E-15 1.9E-19 134.6 13.2 260 233-500 15-275 (280)
28 PRK09782 bacteriophage N4 rece 99.6 3.5E-10 7.6E-15 118.8 47.4 323 169-503 355-707 (987)
29 COG2956 Predicted N-acetylgluc 99.6 2E-11 4.3E-16 106.0 31.3 297 170-505 49-350 (389)
30 PRK10747 putative protoheme IX 99.6 1.2E-11 2.5E-16 119.1 33.5 262 203-509 97-362 (398)
31 PF13429 TPR_15: Tetratricopep 99.6 2.5E-14 5.3E-19 131.6 14.4 260 161-430 13-275 (280)
32 PRK09782 bacteriophage N4 rece 99.6 6E-11 1.3E-15 124.5 40.8 350 135-501 359-739 (987)
33 TIGR00540 hemY_coli hemY prote 99.6 3.2E-11 6.9E-16 116.8 34.7 295 201-501 95-398 (409)
34 KOG2003 TPR repeat-containing 99.6 4.4E-12 9.5E-17 114.7 26.0 187 308-502 502-689 (840)
35 KOG1155 Anaphase-promoting com 99.5 1.6E-10 3.4E-15 105.3 32.9 335 152-498 160-532 (559)
36 KOG1126 DNA-binding cell divis 99.5 8.8E-12 1.9E-16 118.4 25.4 287 205-506 334-624 (638)
37 KOG4318 Bicoid mRNA stability 99.5 1.1E-12 2.4E-17 127.8 19.6 264 212-512 12-275 (1088)
38 COG3071 HemY Uncharacterized e 99.5 1.4E-09 3.1E-14 97.6 36.7 292 168-507 96-395 (400)
39 KOG2076 RNA polymerase III tra 99.5 4.5E-10 9.7E-15 110.5 36.2 330 167-500 150-510 (895)
40 KOG1126 DNA-binding cell divis 99.5 4.8E-11 1E-15 113.6 27.7 285 171-468 334-621 (638)
41 COG2956 Predicted N-acetylgluc 99.5 2.1E-10 4.5E-15 99.8 29.1 291 129-467 46-347 (389)
42 KOG2002 TPR-containing nuclear 99.5 1E-09 2.2E-14 108.8 36.2 337 162-505 348-748 (1018)
43 KOG2076 RNA polymerase III tra 99.5 1.8E-09 3.9E-14 106.3 37.4 361 132-501 153-554 (895)
44 PF13041 PPR_2: PPR repeat fam 99.5 1.6E-13 3.5E-18 88.7 6.4 49 259-307 1-49 (50)
45 COG3071 HemY Uncharacterized e 99.5 1.5E-09 3.2E-14 97.5 33.0 269 202-511 96-364 (400)
46 PF13041 PPR_2: PPR repeat fam 99.4 2.4E-13 5.3E-18 87.9 6.4 50 224-273 1-50 (50)
47 KOG2002 TPR-containing nuclear 99.4 1.3E-09 2.8E-14 108.1 35.0 339 132-481 356-759 (1018)
48 KOG0495 HAT repeat protein [RN 99.4 9.8E-09 2.1E-13 97.7 36.7 327 164-501 524-879 (913)
49 KOG1155 Anaphase-promoting com 99.4 4.5E-09 9.8E-14 96.0 31.2 301 189-501 163-494 (559)
50 KOG4318 Bicoid mRNA stability 99.4 8.5E-11 1.9E-15 114.9 20.6 263 150-450 19-283 (1088)
51 TIGR02521 type_IV_pilW type IV 99.4 1.1E-09 2.5E-14 97.8 26.7 199 155-357 30-229 (234)
52 PF12569 NARP1: NMDA receptor- 99.4 3.2E-09 6.9E-14 103.4 30.7 132 367-501 194-333 (517)
53 TIGR02521 type_IV_pilW type IV 99.3 1.5E-09 3.1E-14 97.1 25.5 202 261-502 31-232 (234)
54 KOG0547 Translocase of outer m 99.3 1.9E-08 4.2E-13 92.5 31.1 356 132-500 129-564 (606)
55 PRK12370 invasion protein regu 99.3 1.9E-09 4.1E-14 108.5 27.3 115 172-289 277-400 (553)
56 PRK12370 invasion protein regu 99.3 5.3E-09 1.1E-13 105.4 29.6 263 119-396 255-535 (553)
57 KOG0495 HAT repeat protein [RN 99.3 1E-06 2.2E-11 84.3 41.1 343 150-503 473-847 (913)
58 KOG1173 Anaphase-promoting com 99.3 4.5E-08 9.9E-13 91.8 31.5 275 224-508 242-522 (611)
59 KOG1840 Kinesin light chain [C 99.3 3.5E-09 7.6E-14 101.8 24.9 238 262-500 200-477 (508)
60 KOG1915 Cell cycle control pro 99.2 6.8E-07 1.5E-11 82.3 36.2 356 132-502 87-500 (677)
61 KOG2003 TPR repeat-containing 99.2 1.2E-07 2.7E-12 86.4 31.1 348 131-488 250-709 (840)
62 KOG1915 Cell cycle control pro 99.2 2.2E-06 4.7E-11 79.1 37.4 302 155-466 72-394 (677)
63 KOG1129 TPR repeat-containing 99.2 1.2E-08 2.6E-13 89.1 21.3 240 265-512 227-468 (478)
64 PF12569 NARP1: NMDA receptor- 99.1 3.4E-07 7.3E-12 89.5 31.1 297 121-430 7-332 (517)
65 COG3063 PilF Tfp pilus assembl 99.1 1.7E-07 3.7E-12 78.3 23.4 200 297-501 36-235 (250)
66 cd05804 StaR_like StaR_like; a 99.1 2.4E-06 5.1E-11 81.8 35.4 193 126-325 14-215 (355)
67 PRK11189 lipoprotein NlpI; Pro 99.1 2.9E-07 6.3E-12 85.0 27.6 155 165-324 35-193 (296)
68 KOG1156 N-terminal acetyltrans 99.1 5.5E-06 1.2E-10 79.5 36.0 376 117-504 40-470 (700)
69 KOG1173 Anaphase-promoting com 99.1 4E-07 8.7E-12 85.7 27.8 282 152-446 240-530 (611)
70 KOG1840 Kinesin light chain [C 99.1 2.5E-07 5.5E-12 89.3 27.2 134 190-323 199-352 (508)
71 KOG4162 Predicted calmodulin-b 99.0 4E-06 8.7E-11 82.0 34.6 355 152-512 319-793 (799)
72 KOG1129 TPR repeat-containing 99.0 4.8E-08 1E-12 85.5 18.9 226 194-430 227-456 (478)
73 KOG1156 N-terminal acetyltrans 99.0 6.3E-06 1.4E-10 79.1 34.1 353 131-499 88-508 (700)
74 cd05804 StaR_like StaR_like; a 99.0 8.2E-06 1.8E-10 78.1 35.3 164 156-325 6-177 (355)
75 KOG0547 Translocase of outer m 99.0 2.1E-07 4.5E-12 86.0 21.6 220 200-429 336-563 (606)
76 KOG1174 Anaphase-promoting com 99.0 1.3E-05 2.8E-10 72.9 32.1 303 152-468 190-501 (564)
77 KOG3785 Uncharacterized conser 99.0 9.1E-06 2E-10 72.3 30.4 347 122-497 58-452 (557)
78 PRK11189 lipoprotein NlpI; Pro 99.0 8.7E-07 1.9E-11 81.8 25.6 182 133-324 41-223 (296)
79 COG3063 PilF Tfp pilus assembl 98.9 1.5E-06 3.3E-11 72.8 23.3 191 158-353 37-229 (250)
80 PF12854 PPR_1: PPR repeat 98.9 2.1E-09 4.6E-14 62.2 4.2 32 221-252 2-33 (34)
81 KOG1174 Anaphase-promoting com 98.9 5.6E-06 1.2E-10 75.2 27.3 292 199-502 205-500 (564)
82 PF12854 PPR_1: PPR repeat 98.9 2.5E-09 5.5E-14 61.9 3.9 34 255-288 1-34 (34)
83 KOG1914 mRNA cleavage and poly 98.8 0.00015 3.3E-09 68.5 34.7 376 117-501 17-500 (656)
84 PF04733 Coatomer_E: Coatomer 98.8 2.2E-07 4.7E-12 84.5 15.2 250 167-466 12-264 (290)
85 PF04733 Coatomer_E: Coatomer 98.8 5.6E-07 1.2E-11 81.9 17.6 129 372-502 136-265 (290)
86 PRK04841 transcriptional regul 98.8 6.1E-05 1.3E-09 81.8 36.3 338 166-503 384-761 (903)
87 KOG1125 TPR repeat-containing 98.7 7.1E-06 1.5E-10 77.8 22.4 218 166-394 295-525 (579)
88 KOG2047 mRNA splicing factor [ 98.7 0.00034 7.3E-09 67.6 33.1 336 157-505 103-509 (835)
89 KOG2376 Signal recognition par 98.6 0.00051 1.1E-08 65.8 35.6 49 167-218 90-138 (652)
90 KOG4340 Uncharacterized conser 98.6 9.4E-05 2E-09 64.5 24.8 193 123-329 13-211 (459)
91 TIGR03302 OM_YfiO outer membra 98.6 2.1E-05 4.6E-10 70.3 21.6 187 154-359 31-231 (235)
92 KOG2047 mRNA splicing factor [ 98.6 0.00092 2E-08 64.7 41.2 222 274-499 360-612 (835)
93 KOG2376 Signal recognition par 98.6 0.00041 8.8E-09 66.4 29.9 56 453-508 356-419 (652)
94 PRK14720 transcript cleavage f 98.6 5.4E-05 1.2E-09 78.1 26.1 222 153-414 28-268 (906)
95 KOG1125 TPR repeat-containing 98.6 2.9E-05 6.3E-10 73.8 22.3 253 236-495 295-564 (579)
96 KOG0624 dsRNA-activated protei 98.5 0.00055 1.2E-08 61.1 31.4 201 155-360 37-252 (504)
97 PLN02789 farnesyltranstransfer 98.5 0.00019 4.1E-09 66.4 27.1 132 133-271 52-186 (320)
98 PRK04841 transcriptional regul 98.5 0.00047 1E-08 74.9 34.9 302 199-501 383-719 (903)
99 KOG1070 rRNA processing protei 98.5 9E-05 1.9E-09 77.4 26.8 227 261-492 1458-1690(1710)
100 KOG3785 Uncharacterized conser 98.5 0.00051 1.1E-08 61.5 27.6 338 155-511 120-497 (557)
101 PLN02789 farnesyltranstransfer 98.5 0.00031 6.8E-09 65.0 27.7 146 158-307 39-187 (320)
102 KOG0985 Vesicle coat protein c 98.5 0.00074 1.6E-08 68.6 31.4 243 201-485 1059-1325(1666)
103 KOG3617 WD40 and TPR repeat-co 98.5 0.0013 2.9E-08 65.4 32.3 143 163-322 833-993 (1416)
104 KOG3616 Selective LIM binding 98.5 0.00016 3.5E-09 70.6 25.9 166 307-499 743-908 (1636)
105 KOG0985 Vesicle coat protein c 98.5 0.0011 2.3E-08 67.5 32.0 240 227-499 1105-1367(1666)
106 KOG1128 Uncharacterized conser 98.5 1.2E-05 2.7E-10 78.3 18.3 214 230-466 402-615 (777)
107 KOG1070 rRNA processing protei 98.5 0.00014 3E-09 76.1 26.6 132 189-323 1457-1591(1710)
108 KOG1128 Uncharacterized conser 98.5 3.1E-05 6.7E-10 75.6 20.3 240 151-412 393-632 (777)
109 KOG3617 WD40 and TPR repeat-co 98.4 5E-05 1.1E-09 75.0 21.1 150 155-322 725-884 (1416)
110 TIGR03302 OM_YfiO outer membra 98.4 5.4E-05 1.2E-09 67.7 20.3 185 189-396 32-232 (235)
111 PRK10370 formate-dependent nit 98.4 2.7E-05 5.8E-10 66.9 16.8 120 168-290 51-173 (198)
112 COG5010 TadD Flp pilus assembl 98.4 8.8E-05 1.9E-09 63.8 19.4 162 155-321 66-227 (257)
113 KOG4340 Uncharacterized conser 98.4 0.00018 3.8E-09 62.9 21.1 292 192-498 12-335 (459)
114 KOG0548 Molecular co-chaperone 98.4 0.0011 2.4E-08 62.9 27.9 359 131-502 15-455 (539)
115 PRK14720 transcript cleavage f 98.4 0.00045 9.8E-09 71.5 27.5 237 189-484 30-268 (906)
116 TIGR00756 PPR pentatricopeptid 98.4 7.4E-07 1.6E-11 52.5 4.6 34 475-508 2-35 (35)
117 COG4783 Putative Zn-dependent 98.4 0.0017 3.7E-08 61.1 28.3 235 132-397 217-455 (484)
118 TIGR00756 PPR pentatricopeptid 98.4 7.2E-07 1.6E-11 52.5 4.2 33 263-295 2-34 (35)
119 KOG0548 Molecular co-chaperone 98.4 0.0028 6E-08 60.3 29.9 92 374-468 365-456 (539)
120 KOG3616 Selective LIM binding 98.3 0.00054 1.2E-08 67.2 25.0 139 161-321 737-875 (1636)
121 PRK15179 Vi polysaccharide bio 98.3 0.00034 7.5E-09 71.5 25.1 183 152-344 82-268 (694)
122 COG5010 TadD Flp pilus assembl 98.3 0.00022 4.8E-09 61.4 19.9 158 189-353 66-224 (257)
123 PF13812 PPR_3: Pentatricopept 98.3 1.3E-06 2.8E-11 51.0 4.4 33 474-506 2-34 (34)
124 PF13812 PPR_3: Pentatricopept 98.3 1E-06 2.2E-11 51.4 3.7 32 263-294 3-34 (34)
125 PRK15359 type III secretion sy 98.3 6.9E-05 1.5E-09 60.8 15.5 90 197-289 31-120 (144)
126 PRK10370 formate-dependent nit 98.3 4.2E-05 9.1E-10 65.7 15.0 92 373-467 79-173 (198)
127 PRK15359 type III secretion sy 98.2 6.9E-05 1.5E-09 60.8 14.8 99 156-256 24-122 (144)
128 PRK15179 Vi polysaccharide bio 98.2 0.00018 3.9E-09 73.5 20.9 169 129-310 97-269 (694)
129 TIGR02552 LcrH_SycD type III s 98.2 7.2E-05 1.6E-09 60.2 14.9 96 191-289 18-113 (135)
130 KOG1127 TPR repeat-containing 98.2 0.00073 1.6E-08 68.6 23.3 110 384-498 800-909 (1238)
131 COG4783 Putative Zn-dependent 98.2 0.00018 4E-09 67.3 18.0 164 153-324 271-436 (484)
132 KOG4162 Predicted calmodulin-b 98.2 0.011 2.3E-07 59.0 32.5 130 333-467 652-783 (799)
133 KOG3060 Uncharacterized conser 98.1 0.0032 7E-08 54.0 22.8 190 132-326 26-221 (289)
134 KOG3081 Vesicle coat complex C 98.1 0.0017 3.7E-08 56.1 21.2 216 167-397 19-237 (299)
135 KOG1914 mRNA cleavage and poly 98.1 0.0057 1.2E-07 58.3 26.1 211 172-385 309-528 (656)
136 PF10037 MRP-S27: Mitochondria 98.1 6.2E-05 1.3E-09 71.3 13.5 134 140-274 50-186 (429)
137 KOG3081 Vesicle coat complex C 98.1 0.0016 3.4E-08 56.3 20.4 50 380-431 186-235 (299)
138 PF08579 RPM2: Mitochondrial r 98.1 6.7E-05 1.5E-09 55.6 10.6 79 194-273 29-116 (120)
139 KOG0624 dsRNA-activated protei 98.1 0.0072 1.6E-07 54.2 31.0 270 155-433 68-371 (504)
140 TIGR02552 LcrH_SycD type III s 98.1 0.00016 3.4E-09 58.2 13.8 107 155-265 16-122 (135)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00022 4.7E-09 67.4 16.2 120 195-322 174-294 (395)
142 PF10037 MRP-S27: Mitochondria 98.1 6.5E-05 1.4E-09 71.2 12.6 121 189-309 65-186 (429)
143 PF08579 RPM2: Mitochondrial r 98.1 8.1E-05 1.8E-09 55.1 10.2 79 230-308 29-116 (120)
144 PF06239 ECSIT: Evolutionarily 98.1 0.0001 2.2E-09 61.8 12.1 35 277-311 119-153 (228)
145 PF01535 PPR: PPR repeat; Int 98.0 4.4E-06 9.6E-11 47.5 2.9 29 263-291 2-30 (31)
146 PF01535 PPR: PPR repeat; Int 98.0 6.9E-06 1.5E-10 46.6 3.3 30 475-504 2-31 (31)
147 KOG2053 Mitochondrial inherita 98.0 0.0076 1.6E-07 60.9 26.1 137 198-342 17-155 (932)
148 PF09976 TPR_21: Tetratricopep 98.0 0.00041 8.9E-09 56.5 14.8 123 158-286 14-143 (145)
149 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.0003 6.6E-09 66.4 15.4 125 159-289 172-296 (395)
150 KOG3060 Uncharacterized conser 98.0 0.0077 1.7E-07 51.8 21.9 144 203-350 25-173 (289)
151 PF09976 TPR_21: Tetratricopep 98.0 0.00044 9.6E-09 56.3 14.2 126 191-322 13-144 (145)
152 PF06239 ECSIT: Evolutionarily 97.9 0.00025 5.4E-09 59.5 12.2 102 155-276 46-153 (228)
153 KOG1127 TPR repeat-containing 97.8 0.05 1.1E-06 56.0 28.5 180 314-499 801-993 (1238)
154 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00098 2.1E-08 52.1 13.7 96 160-255 6-105 (119)
155 PF05843 Suf: Suppressor of fo 97.8 0.00062 1.3E-08 62.2 14.0 129 157-289 2-135 (280)
156 cd00189 TPR Tetratricopeptide 97.8 0.00049 1.1E-08 50.9 11.0 93 194-289 4-96 (100)
157 PF07079 DUF1347: Protein of u 97.7 0.053 1.2E-06 50.9 34.7 122 383-513 396-530 (549)
158 PRK10153 DNA-binding transcrip 97.6 0.003 6.5E-08 62.7 16.8 64 260-325 419-482 (517)
159 cd00189 TPR Tetratricopeptide 97.6 0.0013 2.9E-08 48.5 11.6 93 160-254 4-96 (100)
160 KOG1130 Predicted G-alpha GTPa 97.6 0.0012 2.7E-08 60.4 12.8 132 373-504 201-346 (639)
161 PF05843 Suf: Suppressor of fo 97.6 0.0017 3.6E-08 59.4 14.0 128 372-502 6-136 (280)
162 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0027 5.8E-08 49.6 13.5 95 192-289 4-104 (119)
163 PF12895 Apc3: Anaphase-promot 97.6 0.00018 4E-09 52.2 6.0 82 380-463 2-83 (84)
164 KOG2053 Mitochondrial inherita 97.6 0.11 2.4E-06 52.9 39.6 198 123-327 44-257 (932)
165 PF14938 SNAP: Soluble NSF att 97.6 0.0069 1.5E-07 55.6 17.6 199 269-499 43-263 (282)
166 PF12895 Apc3: Anaphase-promot 97.6 0.00029 6.4E-09 51.1 6.6 81 416-498 2-83 (84)
167 PRK15363 pathogenicity island 97.5 0.0048 1E-07 49.6 13.6 91 373-466 41-131 (157)
168 PRK02603 photosystem I assembl 97.5 0.0039 8.5E-08 52.4 13.8 84 372-456 40-124 (172)
169 PF14559 TPR_19: Tetratricopep 97.5 0.00043 9.2E-09 47.9 6.6 62 168-232 3-64 (68)
170 PLN03088 SGT1, suppressor of 97.4 0.005 1.1E-07 58.4 14.9 100 164-267 10-109 (356)
171 PRK02603 photosystem I assembl 97.4 0.018 3.9E-07 48.4 16.9 89 189-279 34-124 (172)
172 PLN03088 SGT1, suppressor of 97.4 0.0063 1.4E-07 57.8 14.9 104 197-305 9-112 (356)
173 PF13432 TPR_16: Tetratricopep 97.3 0.0011 2.4E-08 45.3 7.0 57 163-219 4-60 (65)
174 PF14938 SNAP: Soluble NSF att 97.3 0.039 8.5E-07 50.6 19.1 114 373-502 100-225 (282)
175 CHL00033 ycf3 photosystem I as 97.3 0.0079 1.7E-07 50.4 13.4 95 403-498 35-138 (168)
176 CHL00033 ycf3 photosystem I as 97.3 0.0076 1.7E-07 50.5 13.1 65 190-254 35-100 (168)
177 PRK15363 pathogenicity island 97.2 0.014 2.9E-07 47.1 12.6 96 405-502 37-132 (157)
178 PRK10866 outer membrane biogen 97.2 0.15 3.2E-06 45.5 22.3 177 161-357 37-238 (243)
179 PF04840 Vps16_C: Vps16, C-ter 97.1 0.22 4.8E-06 46.2 28.6 102 373-495 183-284 (319)
180 PRK10153 DNA-binding transcrip 97.1 0.061 1.3E-06 53.6 18.7 57 297-355 421-477 (517)
181 COG4235 Cytochrome c biogenesi 97.0 0.033 7.1E-07 49.6 14.6 127 173-304 139-268 (287)
182 PRK10866 outer membrane biogen 97.0 0.22 4.8E-06 44.3 23.4 56 268-325 39-98 (243)
183 PF13432 TPR_16: Tetratricopep 97.0 0.0044 9.5E-08 42.2 7.2 55 446-501 5-59 (65)
184 KOG1538 Uncharacterized conser 97.0 0.042 9E-07 53.7 15.6 262 223-504 553-848 (1081)
185 PF13414 TPR_11: TPR repeat; P 97.0 0.0043 9.4E-08 42.9 7.0 62 156-217 3-65 (69)
186 PF14559 TPR_19: Tetratricopep 97.0 0.005 1.1E-07 42.4 7.3 63 201-267 2-64 (68)
187 PRK10803 tol-pal system protei 96.9 0.025 5.4E-07 50.8 13.2 96 157-255 144-246 (263)
188 KOG2796 Uncharacterized conser 96.9 0.25 5.3E-06 43.1 19.8 59 160-218 181-240 (366)
189 KOG0553 TPR repeat-containing 96.9 0.02 4.4E-07 50.7 11.8 100 377-481 91-190 (304)
190 KOG1130 Predicted G-alpha GTPa 96.9 0.017 3.7E-07 53.2 11.7 265 166-430 27-342 (639)
191 PF13414 TPR_11: TPR repeat; P 96.9 0.0055 1.2E-07 42.3 7.0 62 439-501 4-66 (69)
192 PF12921 ATP13: Mitochondrial 96.8 0.037 8E-07 43.3 11.8 82 155-236 1-98 (126)
193 KOG2280 Vacuolar assembly/sort 96.8 0.65 1.4E-05 46.7 26.6 326 147-496 423-793 (829)
194 KOG3941 Intermediate in Toll s 96.8 0.0098 2.1E-07 52.0 9.2 115 189-323 66-186 (406)
195 PF03704 BTAD: Bacterial trans 96.8 0.018 3.9E-07 46.9 10.7 69 440-509 64-137 (146)
196 PF12688 TPR_5: Tetratrico pep 96.8 0.092 2E-06 40.7 13.8 103 163-272 8-117 (120)
197 KOG2796 Uncharacterized conser 96.8 0.31 6.6E-06 42.6 19.1 133 191-325 178-315 (366)
198 KOG2041 WD40 repeat protein [G 96.8 0.65 1.4E-05 46.3 22.8 52 441-492 1024-1076(1189)
199 KOG2041 WD40 repeat protein [G 96.8 0.55 1.2E-05 46.8 21.3 241 188-466 690-951 (1189)
200 PF03704 BTAD: Bacterial trans 96.7 0.011 2.4E-07 48.2 8.8 71 158-228 64-138 (146)
201 KOG0553 TPR repeat-containing 96.7 0.025 5.3E-07 50.2 11.1 102 199-305 90-191 (304)
202 PF12688 TPR_5: Tetratrico pep 96.7 0.049 1.1E-06 42.2 11.6 108 373-484 7-117 (120)
203 COG3898 Uncharacterized membra 96.7 0.52 1.1E-05 43.7 30.7 281 129-432 95-392 (531)
204 PF13371 TPR_9: Tetratricopept 96.7 0.014 3E-07 40.8 7.8 56 164-219 3-58 (73)
205 PF04840 Vps16_C: Vps16, C-ter 96.6 0.58 1.3E-05 43.5 26.7 111 333-465 179-289 (319)
206 KOG0550 Molecular chaperone (D 96.6 0.068 1.5E-06 49.6 13.2 158 340-502 178-350 (486)
207 PF13281 DUF4071: Domain of un 96.6 0.67 1.5E-05 43.6 21.5 169 154-325 139-334 (374)
208 PRK10803 tol-pal system protei 96.5 0.053 1.2E-06 48.7 12.4 97 190-289 143-245 (263)
209 COG4235 Cytochrome c biogenesi 96.5 0.15 3.3E-06 45.6 14.7 114 152-269 152-268 (287)
210 PF12921 ATP13: Mitochondrial 96.5 0.052 1.1E-06 42.5 10.4 48 292-339 48-96 (126)
211 PF13281 DUF4071: Domain of un 96.4 0.91 2E-05 42.7 22.6 31 366-396 304-334 (374)
212 smart00299 CLH Clathrin heavy 96.3 0.32 7E-06 39.1 15.0 43 161-203 12-54 (140)
213 PF13371 TPR_9: Tetratricopept 96.3 0.019 4.1E-07 40.1 6.6 55 412-467 4-58 (73)
214 KOG3941 Intermediate in Toll s 96.2 0.043 9.4E-07 48.1 9.4 115 153-287 64-185 (406)
215 KOG1538 Uncharacterized conser 96.0 1.7 3.6E-05 43.2 19.8 77 379-467 759-846 (1081)
216 PF04053 Coatomer_WDAD: Coatom 96.0 0.36 7.7E-06 47.1 15.8 107 191-325 296-402 (443)
217 PF13525 YfiO: Outer membrane 96.0 0.89 1.9E-05 39.3 21.9 51 372-422 146-197 (203)
218 PF13424 TPR_12: Tetratricopep 96.0 0.027 5.8E-07 40.0 6.2 62 262-323 6-73 (78)
219 COG4700 Uncharacterized protei 96.0 0.73 1.6E-05 38.1 16.2 124 189-317 88-214 (251)
220 PF13424 TPR_12: Tetratricopep 96.0 0.019 4.2E-07 40.7 5.4 61 404-464 6-72 (78)
221 PF13525 YfiO: Outer membrane 96.0 0.94 2E-05 39.2 22.5 57 269-325 13-71 (203)
222 PF09205 DUF1955: Domain of un 95.9 0.56 1.2E-05 36.3 12.7 67 438-505 86-152 (161)
223 COG3629 DnrI DNA-binding trans 95.9 0.053 1.2E-06 48.5 8.6 78 158-235 155-236 (280)
224 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.15 3.3E-06 48.5 12.0 67 152-218 71-140 (453)
225 COG4700 Uncharacterized protei 95.8 0.93 2E-05 37.5 18.4 98 258-357 86-186 (251)
226 COG1729 Uncharacterized protei 95.8 0.37 8E-06 42.6 13.2 99 156-255 142-244 (262)
227 PRK15331 chaperone protein Sic 95.7 0.89 1.9E-05 37.1 14.9 91 303-396 44-134 (165)
228 PF09205 DUF1955: Domain of un 95.7 0.7 1.5E-05 35.8 13.9 60 373-434 92-151 (161)
229 PRK15331 chaperone protein Sic 95.7 0.46 9.9E-06 38.7 12.5 91 373-466 43-133 (165)
230 PF10300 DUF3808: Protein of u 95.7 1.1 2.3E-05 44.5 17.8 162 158-323 190-374 (468)
231 PF13170 DUF4003: Protein of u 95.7 1.7 3.7E-05 39.9 20.1 131 206-339 78-225 (297)
232 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.34 7.3E-06 46.3 13.4 65 188-255 73-141 (453)
233 smart00299 CLH Clathrin heavy 95.6 0.94 2E-05 36.4 15.2 128 192-343 9-137 (140)
234 KOG1585 Protein required for f 95.4 1.6 3.4E-05 37.9 16.5 205 264-496 34-250 (308)
235 KOG2610 Uncharacterized conser 95.4 1.5 3.3E-05 39.9 15.8 163 166-331 113-283 (491)
236 COG3118 Thioredoxin domain-con 95.4 1.5 3.3E-05 39.2 15.6 46 372-417 241-286 (304)
237 COG3118 Thioredoxin domain-con 95.2 2 4.3E-05 38.6 15.8 143 164-311 142-287 (304)
238 COG3898 Uncharacterized membra 95.2 2.7 5.8E-05 39.3 30.3 131 362-502 259-392 (531)
239 COG5107 RNA14 Pre-mRNA 3'-end 95.1 3.2 7E-05 39.5 17.6 124 228-355 399-526 (660)
240 PF04184 ST7: ST7 protein; In 95.0 2.7 5.9E-05 40.7 17.0 60 265-324 263-323 (539)
241 PF13170 DUF4003: Protein of u 95.0 2.9 6.3E-05 38.4 19.6 133 171-305 77-226 (297)
242 PF13428 TPR_14: Tetratricopep 94.8 0.094 2E-06 32.2 5.0 39 158-196 3-41 (44)
243 PF08631 SPO22: Meiosis protei 94.8 3.1 6.8E-05 38.0 25.6 19 167-185 4-22 (278)
244 COG4105 ComL DNA uptake lipopr 94.8 2.6 5.6E-05 37.1 20.7 81 155-237 34-117 (254)
245 KOG4555 TPR repeat-containing 94.8 1.3 2.8E-05 34.3 11.7 91 165-256 52-145 (175)
246 COG4649 Uncharacterized protei 94.8 1.9 4.2E-05 35.3 13.3 133 155-289 58-195 (221)
247 COG5107 RNA14 Pre-mRNA 3'-end 94.7 4 8.8E-05 38.9 29.4 125 373-501 403-530 (660)
248 PF13929 mRNA_stabil: mRNA sta 94.6 3.1 6.8E-05 37.4 15.4 132 171-302 143-284 (292)
249 KOG2114 Vacuolar assembly/sort 94.6 6.5 0.00014 40.6 20.4 150 155-322 363-516 (933)
250 PF08631 SPO22: Meiosis protei 94.6 3.6 7.8E-05 37.6 26.3 166 332-499 85-272 (278)
251 PF04097 Nic96: Nup93/Nic96; 94.6 6.5 0.00014 40.6 22.2 43 161-203 116-158 (613)
252 PF04053 Coatomer_WDAD: Coatom 94.6 0.65 1.4E-05 45.3 12.4 133 156-321 295-427 (443)
253 PF07079 DUF1347: Protein of u 94.6 4.5 9.8E-05 38.6 26.3 72 300-380 132-207 (549)
254 KOG1941 Acetylcholine receptor 94.5 3.1 6.8E-05 38.4 15.4 44 168-211 18-64 (518)
255 PF09613 HrpB1_HrpK: Bacterial 94.0 2.6 5.7E-05 34.2 12.6 51 168-218 22-72 (160)
256 KOG1941 Acetylcholine receptor 94.0 2.8 6.1E-05 38.7 13.9 127 372-498 127-271 (518)
257 COG3629 DnrI DNA-binding trans 94.0 0.77 1.7E-05 41.3 10.5 78 227-305 154-236 (280)
258 KOG0543 FKBP-type peptidyl-pro 93.9 1.8 3.9E-05 40.6 13.1 92 334-429 260-352 (397)
259 PF13512 TPR_18: Tetratricopep 93.9 2.1 4.5E-05 34.1 11.6 85 117-202 8-94 (142)
260 PF10300 DUF3808: Protein of u 93.7 8.1 0.00017 38.4 19.1 117 380-500 246-374 (468)
261 KOG2280 Vacuolar assembly/sort 93.7 9.3 0.0002 39.0 22.9 304 132-464 451-796 (829)
262 KOG0543 FKBP-type peptidyl-pro 93.6 1.9 4E-05 40.5 12.5 90 163-254 215-319 (397)
263 KOG4555 TPR repeat-containing 93.6 2.6 5.7E-05 32.7 11.1 93 374-468 50-145 (175)
264 COG1729 Uncharacterized protei 93.5 2.8 6E-05 37.3 12.8 102 122-227 144-249 (262)
265 KOG0550 Molecular chaperone (D 93.3 7.4 0.00016 36.8 21.6 183 224-413 166-367 (486)
266 KOG2114 Vacuolar assembly/sort 93.2 11 0.00023 39.1 17.8 175 230-429 338-516 (933)
267 PF04184 ST7: ST7 protein; In 93.2 8.9 0.00019 37.3 17.7 155 273-445 180-338 (539)
268 PF13428 TPR_14: Tetratricopep 92.8 0.46 9.9E-06 29.1 5.3 27 441-467 4-30 (44)
269 PF13176 TPR_7: Tetratricopept 92.3 0.35 7.6E-06 28.1 4.1 26 475-500 1-26 (36)
270 COG4105 ComL DNA uptake lipopr 92.2 7.7 0.00017 34.2 20.2 185 117-325 32-233 (254)
271 PF10602 RPN7: 26S proteasome 92.2 2.3 5E-05 35.7 10.4 60 228-287 38-99 (177)
272 KOG2066 Vacuolar assembly/sort 92.1 16 0.00035 37.6 23.3 104 162-273 362-467 (846)
273 KOG1920 IkappaB kinase complex 92.0 21 0.00045 38.7 22.2 82 373-464 971-1052(1265)
274 KOG1464 COP9 signalosome, subu 92.0 8.4 0.00018 34.1 16.1 230 115-345 21-286 (440)
275 TIGR02561 HrpB1_HrpK type III 91.9 5.5 0.00012 31.9 11.4 52 168-219 22-73 (153)
276 PF13431 TPR_17: Tetratricopep 91.9 0.23 4.9E-06 28.5 2.9 32 179-210 2-33 (34)
277 PF13512 TPR_18: Tetratricopep 91.6 4.9 0.00011 32.0 10.9 75 376-450 19-94 (142)
278 COG0457 NrfG FOG: TPR repeat [ 91.6 8.4 0.00018 33.3 29.7 225 239-466 36-264 (291)
279 KOG1550 Extracellular protein 91.3 19 0.00041 36.8 20.8 87 237-327 260-359 (552)
280 PF13176 TPR_7: Tetratricopept 91.1 0.58 1.3E-05 27.1 4.1 23 193-215 2-24 (36)
281 PF10602 RPN7: 26S proteasome 90.8 6.8 0.00015 32.9 11.9 60 406-465 39-100 (177)
282 COG4649 Uncharacterized protei 90.7 8.4 0.00018 31.7 14.1 125 343-467 70-196 (221)
283 KOG4570 Uncharacterized conser 90.5 3.2 7E-05 37.5 9.8 99 189-289 63-163 (418)
284 KOG1585 Protein required for f 90.2 12 0.00026 32.7 19.7 84 192-286 33-116 (308)
285 PF02284 COX5A: Cytochrome c o 89.8 6.5 0.00014 29.1 9.5 74 265-339 12-87 (108)
286 PF02259 FAT: FAT domain; Int 89.8 18 0.00039 34.3 19.7 54 232-289 4-57 (352)
287 PRK11906 transcriptional regul 89.5 19 0.00042 34.9 14.8 109 383-497 320-431 (458)
288 COG4785 NlpI Lipoprotein NlpI, 89.4 13 0.00028 31.9 14.2 161 155-325 98-266 (297)
289 PRK11906 transcriptional regul 89.2 23 0.00049 34.5 16.5 159 157-320 252-431 (458)
290 PF09613 HrpB1_HrpK: Bacterial 89.1 11 0.00024 30.7 14.2 50 237-290 21-73 (160)
291 PF07035 Mic1: Colon cancer-as 88.8 12 0.00026 30.9 16.2 20 373-392 95-114 (167)
292 KOG4570 Uncharacterized conser 88.5 2.5 5.3E-05 38.2 7.6 94 373-468 70-165 (418)
293 cd00923 Cyt_c_Oxidase_Va Cytoc 88.4 8 0.00017 28.3 9.0 62 137-198 23-84 (103)
294 PF07035 Mic1: Colon cancer-as 88.2 13 0.00029 30.6 15.2 21 221-241 24-44 (167)
295 PF00637 Clathrin: Region in C 87.8 0.33 7.1E-06 39.2 1.8 84 196-287 13-96 (143)
296 PF13929 mRNA_stabil: mRNA sta 87.4 22 0.00048 32.2 16.0 133 203-335 141-282 (292)
297 KOG0991 Replication factor C, 87.2 19 0.00042 31.4 11.8 69 413-483 202-282 (333)
298 KOG0276 Vesicle coat complex C 87.0 7.3 0.00016 38.7 10.4 45 273-323 649-693 (794)
299 PF14669 Asp_Glu_race_2: Putat 86.8 17 0.00038 30.4 17.6 55 408-462 137-205 (233)
300 COG4785 NlpI Lipoprotein NlpI, 86.8 19 0.00042 30.9 14.6 27 405-431 239-265 (297)
301 PF02284 COX5A: Cytochrome c o 86.7 8.9 0.00019 28.4 8.2 60 139-198 28-87 (108)
302 PF13431 TPR_17: Tetratricopep 86.5 0.98 2.1E-05 25.8 2.8 24 470-493 10-33 (34)
303 cd00923 Cyt_c_Oxidase_Va Cytoc 86.3 7.9 0.00017 28.3 7.7 46 279-324 25-70 (103)
304 KOG4279 Serine/threonine prote 86.2 24 0.00052 36.2 13.6 93 134-226 179-280 (1226)
305 KOG1550 Extracellular protein 86.2 43 0.00092 34.2 20.7 150 172-327 228-395 (552)
306 PF13374 TPR_10: Tetratricopep 86.0 2.1 4.5E-05 25.4 4.4 27 474-500 3-29 (42)
307 PF00515 TPR_1: Tetratricopept 85.7 2.5 5.5E-05 23.8 4.4 29 474-502 2-30 (34)
308 COG2976 Uncharacterized protei 85.7 21 0.00045 30.2 14.0 95 372-468 94-189 (207)
309 PF00515 TPR_1: Tetratricopept 84.9 3.6 7.8E-05 23.1 4.8 27 192-218 3-29 (34)
310 TIGR02561 HrpB1_HrpK type III 84.3 20 0.00043 28.8 10.7 54 344-399 23-76 (153)
311 PRK11619 lytic murein transgly 84.3 56 0.0012 34.0 28.5 116 381-499 255-372 (644)
312 PF13374 TPR_10: Tetratricopep 83.7 2.8 6E-05 24.8 4.2 25 263-287 4-28 (42)
313 PF07719 TPR_2: Tetratricopept 83.5 4.4 9.5E-05 22.6 4.8 27 192-218 3-29 (34)
314 PF07719 TPR_2: Tetratricopept 83.5 3.6 7.8E-05 23.0 4.4 28 474-501 2-29 (34)
315 KOG1464 COP9 signalosome, subu 83.0 34 0.00073 30.5 17.9 202 221-423 21-251 (440)
316 KOG0276 Vesicle coat complex C 82.3 20 0.00044 35.8 11.0 151 167-360 597-747 (794)
317 PF10345 Cohesin_load: Cohesin 81.7 70 0.0015 33.2 31.0 64 414-477 372-451 (608)
318 COG0457 NrfG FOG: TPR repeat [ 80.7 35 0.00077 29.2 29.4 58 373-432 208-265 (291)
319 KOG1258 mRNA processing protei 80.4 67 0.0015 32.2 31.1 114 374-493 304-420 (577)
320 TIGR03504 FimV_Cterm FimV C-te 80.3 3.5 7.5E-05 25.2 3.5 24 479-502 5-28 (44)
321 PF11207 DUF2989: Protein of u 80.1 21 0.00046 30.4 9.2 72 243-315 123-197 (203)
322 PF13181 TPR_8: Tetratricopept 80.1 5.5 0.00012 22.2 4.3 27 475-501 3-29 (34)
323 PF00637 Clathrin: Region in C 80.1 1.6 3.4E-05 35.2 2.7 83 302-392 13-95 (143)
324 PF14669 Asp_Glu_race_2: Putat 79.9 35 0.00077 28.7 16.1 67 442-511 136-216 (233)
325 PF13762 MNE1: Mitochondrial s 79.9 30 0.00064 27.8 10.1 81 229-309 42-128 (145)
326 PF02259 FAT: FAT domain; Int 79.7 56 0.0012 30.9 22.3 54 196-254 4-57 (352)
327 COG4455 ImpE Protein of avirul 79.2 11 0.00024 32.4 7.2 73 373-447 7-81 (273)
328 KOG0890 Protein kinase of the 79.2 1.5E+02 0.0032 35.5 26.4 65 438-505 1670-1734(2382)
329 PF13174 TPR_6: Tetratricopept 78.9 4.8 0.0001 22.2 3.8 24 196-219 6-29 (33)
330 KOG2610 Uncharacterized conser 78.4 57 0.0012 30.2 23.9 162 200-365 113-283 (491)
331 PF13762 MNE1: Mitochondrial s 78.4 33 0.00072 27.5 9.8 88 404-491 40-133 (145)
332 PF07163 Pex26: Pex26 protein; 78.1 35 0.00075 30.7 10.2 54 372-426 123-181 (309)
333 KOG1586 Protein required for f 77.3 50 0.0011 29.0 12.5 24 449-472 165-188 (288)
334 TIGR03504 FimV_Cterm FimV C-te 77.2 6.1 0.00013 24.2 3.9 24 302-325 5-28 (44)
335 COG4455 ImpE Protein of avirul 77.0 19 0.00042 31.0 8.0 57 160-216 5-61 (273)
336 COG2909 MalT ATP-dependent tra 77.0 1.1E+02 0.0023 32.6 24.3 223 273-498 427-684 (894)
337 KOG2297 Predicted translation 76.9 60 0.0013 29.7 21.7 77 373-458 261-341 (412)
338 PF11207 DUF2989: Protein of u 76.2 30 0.00065 29.5 9.0 73 207-281 123-198 (203)
339 PF10345 Cohesin_load: Cohesin 75.1 1.1E+02 0.0024 31.8 33.6 183 137-322 40-251 (608)
340 TIGR02508 type_III_yscG type I 74.7 32 0.00069 25.5 7.8 60 410-476 46-105 (115)
341 PF07721 TPR_4: Tetratricopept 74.7 5 0.00011 21.1 2.8 20 478-497 6-25 (26)
342 PHA02875 ankyrin repeat protei 74.5 88 0.0019 30.5 15.0 79 198-285 7-89 (413)
343 KOG2582 COP9 signalosome, subu 74.2 78 0.0017 29.7 21.3 56 448-503 287-346 (422)
344 PF13174 TPR_6: Tetratricopept 73.8 6.5 0.00014 21.6 3.4 26 477-502 4-29 (33)
345 PF13181 TPR_8: Tetratricopept 73.7 11 0.00023 21.0 4.4 27 192-218 3-29 (34)
346 PF07163 Pex26: Pex26 protein; 73.4 52 0.0011 29.7 10.1 73 268-342 90-164 (309)
347 KOG2063 Vacuolar assembly/sort 73.1 1.4E+02 0.003 32.2 16.0 40 446-485 599-638 (877)
348 PF04097 Nic96: Nup93/Nic96; 71.3 1.3E+02 0.0029 31.2 20.6 64 189-255 111-181 (613)
349 PHA02875 ankyrin repeat protei 71.1 1E+02 0.0023 30.0 13.3 139 164-319 7-155 (413)
350 KOG1920 IkappaB kinase complex 70.7 1.8E+02 0.0038 32.3 29.3 57 409-466 971-1027(1265)
351 COG3947 Response regulator con 70.6 85 0.0018 28.6 17.4 55 373-429 285-339 (361)
352 PRK10941 hypothetical protein; 69.9 82 0.0018 28.6 11.0 79 192-272 183-262 (269)
353 KOG4234 TPR repeat-containing 69.8 68 0.0015 27.4 9.4 94 374-468 102-198 (271)
354 PF11848 DUF3368: Domain of un 69.3 21 0.00045 22.3 5.1 31 450-480 14-44 (48)
355 PF11848 DUF3368: Domain of un 68.6 20 0.00044 22.3 5.0 30 274-303 15-44 (48)
356 COG3947 Response regulator con 68.2 96 0.0021 28.3 14.6 70 441-511 282-356 (361)
357 smart00638 LPD_N Lipoprotein N 67.6 1.6E+02 0.0034 30.4 24.8 101 119-226 309-411 (574)
358 PF10579 Rapsyn_N: Rapsyn N-te 67.2 22 0.00047 25.0 5.2 46 450-495 18-65 (80)
359 cd08819 CARD_MDA5_2 Caspase ac 67.0 35 0.00076 24.5 6.3 14 204-217 50-63 (88)
360 TIGR02508 type_III_yscG type I 66.8 50 0.0011 24.5 8.6 86 205-299 20-105 (115)
361 PF11846 DUF3366: Domain of un 66.7 28 0.00061 29.7 7.3 33 222-254 140-172 (193)
362 KOG0403 Neoplastic transformat 66.0 1.3E+02 0.0029 29.1 22.3 63 441-504 512-574 (645)
363 PF06552 TOM20_plant: Plant sp 65.7 80 0.0017 26.5 10.8 43 277-327 96-138 (186)
364 PF11768 DUF3312: Protein of u 65.7 1.1E+02 0.0024 30.6 11.5 59 372-430 413-471 (545)
365 PF10579 Rapsyn_N: Rapsyn N-te 65.6 28 0.00061 24.5 5.5 47 379-425 18-65 (80)
366 KOG4077 Cytochrome c oxidase, 65.0 65 0.0014 25.1 10.0 47 279-325 67-113 (149)
367 KOG0508 Ankyrin repeat protein 63.8 1.5E+02 0.0033 29.0 15.3 105 139-250 98-204 (615)
368 KOG4648 Uncharacterized conser 63.6 59 0.0013 30.2 8.6 52 199-253 106-158 (536)
369 COG2909 MalT ATP-dependent tra 63.3 2.1E+02 0.0046 30.5 31.5 223 238-463 427-684 (894)
370 KOG4521 Nuclear pore complex, 62.9 2.3E+02 0.0051 31.3 13.8 83 263-348 985-1071(1480)
371 smart00777 Mad3_BUB1_I Mad3/BU 62.1 54 0.0012 25.7 7.2 19 478-496 104-122 (125)
372 KOG3807 Predicted membrane pro 61.9 78 0.0017 29.3 9.0 131 242-383 232-364 (556)
373 PF09454 Vps23_core: Vps23 cor 61.9 20 0.00042 24.2 4.2 50 436-486 6-55 (65)
374 PF04762 IKI3: IKI3 family; I 61.5 1.7E+02 0.0038 32.1 13.3 27 406-432 815-843 (928)
375 COG5187 RPN7 26S proteasome re 61.2 1.3E+02 0.0028 27.4 13.8 115 221-337 110-233 (412)
376 KOG2062 26S proteasome regulat 61.1 1.6E+02 0.0036 30.6 11.9 185 206-396 39-239 (929)
377 PF06552 TOM20_plant: Plant sp 61.1 53 0.0011 27.5 7.3 77 172-257 51-138 (186)
378 PF11817 Foie-gras_1: Foie gra 60.8 67 0.0015 28.7 8.8 22 372-393 183-204 (247)
379 PF14689 SPOB_a: Sensor_kinase 60.6 25 0.00055 23.4 4.6 24 442-465 27-50 (62)
380 COG5159 RPN6 26S proteasome re 60.4 1.3E+02 0.0029 27.2 15.5 50 232-281 9-65 (421)
381 smart00386 HAT HAT (Half-A-TPR 60.1 24 0.00051 19.0 3.9 27 171-197 2-28 (33)
382 KOG0687 26S proteasome regulat 59.4 1.5E+02 0.0032 27.6 10.2 95 404-500 105-208 (393)
383 PF14689 SPOB_a: Sensor_kinase 58.9 44 0.00096 22.2 5.5 24 195-218 28-51 (62)
384 COG0735 Fur Fe2+/Zn2+ uptake r 58.7 63 0.0014 26.1 7.4 43 303-345 27-69 (145)
385 PF11663 Toxin_YhaV: Toxin wit 58.6 9.5 0.00021 29.9 2.5 32 450-483 107-138 (140)
386 KOG2391 Vacuolar sorting prote 58.6 72 0.0016 29.4 8.3 29 191-219 300-328 (365)
387 smart00028 TPR Tetratricopepti 58.6 17 0.00036 19.0 3.2 27 475-501 3-29 (34)
388 COG1747 Uncharacterized N-term 57.9 2E+02 0.0044 28.6 25.1 169 223-398 63-236 (711)
389 PRK10564 maltose regulon perip 56.4 22 0.00048 32.3 4.8 28 230-257 261-288 (303)
390 PF11123 DNA_Packaging_2: DNA 56.0 44 0.00095 23.0 4.9 34 171-204 12-45 (82)
391 PF11846 DUF3366: Domain of un 55.9 63 0.0014 27.5 7.6 33 434-466 140-172 (193)
392 PF08424 NRDE-2: NRDE-2, neces 55.6 1.8E+02 0.0039 27.3 13.4 77 137-217 50-129 (321)
393 cd00280 TRFH Telomeric Repeat 55.2 1E+02 0.0022 25.9 7.9 14 383-396 85-98 (200)
394 KOG0687 26S proteasome regulat 54.4 1.8E+02 0.004 27.0 13.3 97 227-325 105-210 (393)
395 KOG4234 TPR repeat-containing 54.1 1.4E+02 0.0031 25.6 9.7 93 339-433 103-198 (271)
396 PF08311 Mad3_BUB1_I: Mad3/BUB 53.7 1.1E+02 0.0023 24.0 8.5 42 279-320 81-123 (126)
397 PF02631 RecX: RecX family; I 53.2 1E+02 0.0022 23.8 9.7 30 314-343 10-39 (121)
398 PRK10564 maltose regulon perip 52.9 30 0.00065 31.5 5.1 29 406-434 260-288 (303)
399 KOG2034 Vacuolar sorting prote 52.4 3.3E+02 0.0071 29.2 25.6 80 421-502 611-696 (911)
400 PF08870 DUF1832: Domain of un 52.1 51 0.0011 25.2 5.5 89 207-310 6-96 (113)
401 PF08311 Mad3_BUB1_I: Mad3/BUB 51.8 1.1E+02 0.0025 23.8 9.1 43 385-427 81-123 (126)
402 PF11663 Toxin_YhaV: Toxin wit 51.8 19 0.0004 28.3 3.1 21 204-225 109-129 (140)
403 PF07064 RIC1: RIC1; InterPro 51.8 1.8E+02 0.004 26.2 16.6 58 373-430 185-247 (258)
404 PF11838 ERAP1_C: ERAP1-like C 51.2 2.1E+02 0.0045 26.6 15.7 125 190-321 129-262 (324)
405 KOG2908 26S proteasome regulat 50.8 87 0.0019 29.1 7.5 62 405-466 77-143 (380)
406 PRK09687 putative lyase; Provi 50.6 2E+02 0.0044 26.3 28.6 233 224-483 35-277 (280)
407 KOG4648 Uncharacterized conser 50.3 1.5E+02 0.0032 27.8 8.9 92 165-260 106-197 (536)
408 PF12862 Apc5: Anaphase-promot 50.3 98 0.0021 22.6 7.9 21 198-218 49-69 (94)
409 COG0790 FOG: TPR repeat, SEL1 50.2 2E+02 0.0044 26.2 19.7 117 382-506 128-270 (292)
410 TIGR03184 DNA_S_dndE DNA sulfu 49.9 55 0.0012 24.6 5.3 91 207-310 5-98 (105)
411 COG5108 RPO41 Mitochondrial DN 49.8 1.2E+02 0.0027 31.0 9.0 73 161-237 33-114 (1117)
412 KOG4567 GTPase-activating prot 49.7 1.2E+02 0.0026 27.9 8.1 58 246-308 263-320 (370)
413 KOG2062 26S proteasome regulat 49.6 3.4E+02 0.0073 28.6 14.0 125 373-501 507-634 (929)
414 COG5108 RPO41 Mitochondrial DN 49.3 1.1E+02 0.0024 31.3 8.6 91 195-288 33-130 (1117)
415 PRK14958 DNA polymerase III su 49.0 3E+02 0.0065 27.9 12.1 72 221-295 195-279 (509)
416 PF10366 Vps39_1: Vacuolar sor 49.0 1.2E+02 0.0025 23.1 7.3 27 440-466 41-67 (108)
417 PF09454 Vps23_core: Vps23 cor 48.5 38 0.00082 22.9 3.9 50 154-203 6-55 (65)
418 PF01347 Vitellogenin_N: Lipop 48.2 3.4E+02 0.0074 28.2 20.2 114 121-239 347-469 (618)
419 PRK08691 DNA polymerase III su 48.1 3.2E+02 0.0069 28.8 11.9 19 275-293 259-277 (709)
420 PRK09857 putative transposase; 47.7 1.3E+02 0.0028 27.8 8.5 56 449-505 217-272 (292)
421 KOG4077 Cytochrome c oxidase, 47.7 1.3E+02 0.0029 23.5 8.3 36 150-185 78-113 (149)
422 smart00777 Mad3_BUB1_I Mad3/BU 47.5 85 0.0018 24.6 6.2 41 422-462 82-123 (125)
423 PRK15180 Vi polysaccharide bio 47.4 2.9E+02 0.0063 27.2 18.2 89 198-289 331-419 (831)
424 PRK11639 zinc uptake transcrip 45.7 1.3E+02 0.0028 25.0 7.6 34 312-345 41-74 (169)
425 PRK09687 putative lyase; Provi 45.7 2.4E+02 0.0052 25.8 28.4 145 189-346 67-221 (280)
426 PF11817 Foie-gras_1: Foie gra 45.6 1.6E+02 0.0034 26.4 8.6 21 196-216 184-204 (247)
427 KOG4567 GTPase-activating prot 45.0 1.5E+02 0.0033 27.2 8.0 58 210-273 263-320 (370)
428 PF07575 Nucleopor_Nup85: Nup8 45.0 58 0.0013 33.4 6.5 62 189-253 404-465 (566)
429 KOG2063 Vacuolar assembly/sort 44.6 4.5E+02 0.0097 28.6 17.2 27 192-218 506-532 (877)
430 KOG2396 HAT (Half-A-TPR) repea 43.8 3.4E+02 0.0074 27.0 24.0 281 173-466 268-558 (568)
431 PRK07003 DNA polymerase III su 43.7 4.4E+02 0.0095 28.3 15.8 34 260-294 245-278 (830)
432 PF02847 MA3: MA3 domain; Int 43.5 1.4E+02 0.0031 22.5 7.5 22 372-393 7-28 (113)
433 cd08819 CARD_MDA5_2 Caspase ac 43.5 1.2E+02 0.0027 21.8 7.5 14 310-323 50-63 (88)
434 PRK09857 putative transposase; 43.3 2E+02 0.0044 26.5 9.1 64 229-293 209-272 (292)
435 PF12926 MOZART2: Mitotic-spin 42.9 1.3E+02 0.0027 21.7 7.9 42 247-288 29-70 (88)
436 KOG2659 LisH motif-containing 42.5 2.4E+02 0.0051 24.8 9.8 54 233-286 71-128 (228)
437 PF10366 Vps39_1: Vacuolar sor 42.5 1.5E+02 0.0032 22.5 7.7 26 264-289 42-67 (108)
438 KOG0991 Replication factor C, 42.5 2.4E+02 0.0053 24.9 12.9 39 293-332 236-274 (333)
439 PF11768 DUF3312: Protein of u 41.4 3.9E+02 0.0085 27.0 11.7 23 195-217 413-435 (545)
440 KOG0292 Vesicle coat complex C 41.3 2E+02 0.0044 30.7 9.2 72 236-322 653-724 (1202)
441 TIGR03581 EF_0839 conserved hy 40.8 1E+02 0.0023 26.5 6.1 43 422-464 191-234 (236)
442 PRK13342 recombination factor 40.0 3.7E+02 0.008 26.3 18.9 30 240-269 244-273 (413)
443 PRK14951 DNA polymerase III su 39.5 4E+02 0.0087 27.7 11.3 30 264-294 254-283 (618)
444 PF10475 DUF2450: Protein of u 39.3 2.8E+02 0.0061 25.5 9.5 23 294-316 195-217 (291)
445 PRK14958 DNA polymerase III su 39.3 3.8E+02 0.0083 27.1 11.0 87 383-472 180-279 (509)
446 PRK09462 fur ferric uptake reg 39.2 1.8E+02 0.0039 23.4 7.4 35 312-346 33-67 (148)
447 KOG1258 mRNA processing protei 38.7 4.4E+02 0.0096 26.8 33.8 186 295-488 296-490 (577)
448 PRK14963 DNA polymerase III su 38.5 4.3E+02 0.0093 26.7 11.2 31 264-295 245-275 (504)
449 PF07304 SRA1: Steroid recepto 38.4 75 0.0016 26.1 4.9 21 125-145 96-117 (157)
450 PRK14951 DNA polymerase III su 38.3 4E+02 0.0087 27.8 11.0 85 383-471 185-283 (618)
451 KOG4507 Uncharacterized conser 37.8 2.4E+02 0.0052 28.7 8.8 101 380-483 620-720 (886)
452 COG5159 RPN6 26S proteasome re 37.6 3.2E+02 0.007 25.0 15.0 200 267-466 9-234 (421)
453 KOG0889 Histone acetyltransfer 37.1 1E+03 0.022 30.6 17.9 61 152-218 2450-2510(3550)
454 PF10475 DUF2450: Protein of u 36.9 3.4E+02 0.0074 25.0 9.7 53 231-289 103-155 (291)
455 PRK12798 chemotaxis protein; R 36.8 4.1E+02 0.0088 25.9 20.6 152 239-393 125-283 (421)
456 PF12793 SgrR_N: Sugar transpo 36.5 2E+02 0.0043 22.1 8.1 43 212-256 5-47 (115)
457 COG0735 Fur Fe2+/Zn2+ uptake r 35.9 2.3E+02 0.005 22.8 7.6 44 232-275 26-69 (145)
458 PF09868 DUF2095: Uncharacteri 35.7 1.3E+02 0.0029 22.8 5.2 26 162-187 67-92 (128)
459 PF01347 Vitellogenin_N: Lipop 35.6 5.3E+02 0.011 26.8 19.5 44 440-485 559-603 (618)
460 PRK06645 DNA polymerase III su 35.3 4.9E+02 0.011 26.4 11.2 28 267-295 264-291 (507)
461 PF12926 MOZART2: Mitotic-spin 35.1 1.7E+02 0.0037 21.1 8.4 43 424-466 29-71 (88)
462 KOG3364 Membrane protein invol 34.9 2.2E+02 0.0048 22.7 6.6 75 155-232 34-110 (149)
463 KOG2659 LisH motif-containing 34.8 3.2E+02 0.0069 24.0 8.7 99 222-322 22-129 (228)
464 PF12796 Ank_2: Ankyrin repeat 34.8 1.3E+02 0.0028 21.3 5.4 15 494-508 73-87 (89)
465 COG1747 Uncharacterized N-term 34.6 4.9E+02 0.011 26.1 24.8 81 259-343 64-144 (711)
466 PRK08691 DNA polymerase III su 34.5 4.6E+02 0.0099 27.7 10.7 87 382-471 179-278 (709)
467 PF07064 RIC1: RIC1; InterPro 34.4 3.5E+02 0.0076 24.4 16.3 25 159-183 85-109 (258)
468 PRK11639 zinc uptake transcrip 34.2 2.7E+02 0.0059 23.1 7.8 56 221-277 21-76 (169)
469 PRK14963 DNA polymerase III su 34.1 4.2E+02 0.0091 26.8 10.3 86 382-471 176-274 (504)
470 PRK14956 DNA polymerase III su 34.0 5E+02 0.011 26.0 12.2 36 437-472 247-282 (484)
471 PF04762 IKI3: IKI3 family; I 33.9 6.9E+02 0.015 27.7 15.5 28 298-325 814-843 (928)
472 PF09670 Cas_Cas02710: CRISPR- 33.6 4.5E+02 0.0097 25.4 11.9 53 165-218 140-197 (379)
473 PF02847 MA3: MA3 domain; Int 33.5 1.7E+02 0.0037 22.0 6.2 20 197-216 9-28 (113)
474 PHA03100 ankyrin repeat protei 33.4 3.1E+02 0.0068 27.3 9.7 241 231-505 37-308 (480)
475 PRK14956 DNA polymerase III su 32.9 5.2E+02 0.011 25.9 12.4 100 208-331 184-283 (484)
476 PF08424 NRDE-2: NRDE-2, neces 32.9 4.2E+02 0.009 24.8 17.6 118 207-327 48-185 (321)
477 COG0819 TenA Putative transcri 32.8 2.8E+02 0.0061 24.2 7.8 56 253-308 101-167 (218)
478 PF09477 Type_III_YscG: Bacter 32.8 2.2E+02 0.0048 21.6 7.9 16 415-430 81-96 (116)
479 PRK10941 hypothetical protein; 32.7 3.8E+02 0.0083 24.4 9.5 57 338-396 188-244 (269)
480 cd07153 Fur_like Ferric uptake 32.5 1.1E+02 0.0025 23.2 5.0 37 310-346 14-50 (116)
481 KOG1498 26S proteasome regulat 32.0 4.7E+02 0.01 25.2 15.6 98 372-477 136-252 (439)
482 KOG4507 Uncharacterized conser 31.5 5.5E+02 0.012 26.3 10.1 146 117-272 568-721 (886)
483 PRK15180 Vi polysaccharide bio 31.2 5.3E+02 0.012 25.6 25.2 111 99-218 309-419 (831)
484 PF14561 TPR_20: Tetratricopep 31.1 2.1E+02 0.0045 20.8 8.9 30 189-218 21-50 (90)
485 PF06957 COPI_C: Coatomer (COP 31.0 3E+02 0.0066 26.9 8.3 49 282-330 284-334 (422)
486 smart00804 TAP_C C-terminal do 31.0 41 0.00089 22.5 1.9 23 204-226 39-61 (63)
487 PF09477 Type_III_YscG: Bacter 30.9 2.4E+02 0.0052 21.4 9.6 77 133-218 21-97 (116)
488 PRK07764 DNA polymerase III su 30.8 3.8E+02 0.0083 29.1 9.9 23 478-500 556-578 (824)
489 PRK09462 fur ferric uptake reg 30.7 2.3E+02 0.0051 22.8 6.7 60 393-454 8-68 (148)
490 PF09868 DUF2095: Uncharacteri 30.6 2.3E+02 0.0049 21.7 5.7 25 444-468 67-91 (128)
491 PF01475 FUR: Ferric uptake re 30.3 1E+02 0.0022 23.7 4.4 47 301-347 12-58 (120)
492 COG5116 RPN2 26S proteasome re 30.2 4.7E+02 0.01 26.6 9.3 78 317-397 160-238 (926)
493 PF03745 DUF309: Domain of unk 30.1 1.7E+02 0.0037 19.5 5.5 12 381-392 13-24 (62)
494 cd07153 Fur_like Ferric uptake 29.8 1.6E+02 0.0034 22.4 5.4 43 269-311 8-50 (116)
495 COG4003 Uncharacterized protei 29.1 2.1E+02 0.0046 20.2 5.3 31 443-474 36-66 (98)
496 PF02607 B12-binding_2: B12 bi 29.0 96 0.0021 21.6 3.7 33 274-306 14-46 (79)
497 PF13934 ELYS: Nuclear pore co 28.5 4.1E+02 0.0089 23.4 12.0 106 334-450 79-184 (226)
498 COG4003 Uncharacterized protei 28.1 2.1E+02 0.0045 20.3 4.8 26 162-187 37-62 (98)
499 cd00280 TRFH Telomeric Repeat 27.5 3.8E+02 0.0083 22.7 11.9 37 269-308 119-155 (200)
500 PF07678 A2M_comp: A-macroglob 27.4 4.5E+02 0.0097 23.4 9.3 45 206-253 115-159 (246)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-60 Score=495.13 Aligned_cols=408 Identities=16% Similarity=0.154 Sum_probs=361.1
Q ss_pred HhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhccc
Q 010320 92 LLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169 (513)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 169 (513)
.+++.+...+++.++..+. .||..+|+.+|.+|+ ++.+.|.++|+.|.+. |+.||..+|+.+|.+|++.
T Consensus 415 ~~~~~g~~~eAl~lf~~M~------~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~---Gl~pD~~tynsLI~~y~k~ 485 (1060)
T PLN03218 415 ACKKQRAVKEAFRFAKLIR------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEA---GLKADCKLYTTLISTCAKS 485 (1060)
T ss_pred HHHHCCCHHHHHHHHHHcC------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhC
Confidence 3455666777777777764 389999999999995 4778899999988774 5889999999999999999
Q ss_pred CCHHHHHHHHHHHHhccC-CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 010320 170 NNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAA 248 (513)
Q Consensus 170 g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 248 (513)
|++++|.++|++|.+.|+ ||..+|+.||.+|++.|++++|+++|++|.+. |+.||..+|+.||.+|++.|++++|.++
T Consensus 486 G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~~deA~~l 564 (1060)
T PLN03218 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDV 564 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999998 59999999999999999999999999999975 9999999999999999999999999999
Q ss_pred HHHHHH--CCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010320 249 FQEIKD--SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326 (513)
Q Consensus 249 ~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 326 (513)
|++|.+ .|+.||..+|++||.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 565 f~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G 644 (1060)
T PLN03218 565 LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644 (1060)
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 999986 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccc--hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010320 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW--LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR 404 (513)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 404 (513)
+.||..+|+.+|++|++.|++++|.++++.+.+ .+..+. +++.+|.+|++.|++++|.++|++|...+..| +..
T Consensus 645 v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k---~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvv 720 (1060)
T PLN03218 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARK---QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVS 720 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHH
Confidence 999999999999999999988877666665554 333332 35679999999999999999999998876655 577
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320 405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484 (513)
Q Consensus 405 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (513)
+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++..|.
T Consensus 721 tyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 721 TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999986543
Q ss_pred h----c-------------------CCHhHHHHHHHHHHHCCCCCCCCCCCC
Q 010320 485 T----C-------------------GQRRKVNQVLGLMCKNGYDVPVNAFPS 513 (513)
Q Consensus 485 ~----~-------------------g~~~~A~~~~~~m~~~g~~p~~~t~~S 513 (513)
+ + +..++|..+|++|++.|+.||..||++
T Consensus 801 ~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~ 852 (1060)
T PLN03218 801 RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQ 852 (1060)
T ss_pred HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 2 1 224679999999999999999988863
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.5e-60 Score=489.85 Aligned_cols=416 Identities=15% Similarity=0.156 Sum_probs=372.4
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHH
Q 010320 84 TVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTK 161 (513)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 161 (513)
.+..++..++ +.++..++++++++|.... -..++...+..++..|+ +..+.|..+|+.|. .||..+|+.
T Consensus 372 ~~~~~y~~l~-r~G~l~eAl~Lfd~M~~~g-vv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-------~pd~~Tyn~ 442 (1060)
T PLN03218 372 EYIDAYNRLL-RDGRIKDCIDLLEDMEKRG-LLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-------NPTLSTFNM 442 (1060)
T ss_pred HHHHHHHHHH-HCcCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-------CCCHHHHHH
Confidence 3445555554 3444455555555553221 13467777888888884 46778888887663 289999999
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010320 162 GIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 240 (513)
+|.+|++.|+++.|.++|++|.+.|+. |..+|++||.+|++.|++++|.++|++|.+. |+.||..||++||.+|++.|
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCc
Confidence 999999999999999999999999984 9999999999999999999999999999986 99999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010320 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA--GPVMPDTNTYLLLLRGYAHSGNLPRMEKI 318 (513)
Q Consensus 241 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 318 (513)
++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|.. .|+.||..+|++||.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999976 68999999999999999999999999999
Q ss_pred HHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccc--hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010320 319 YELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW--LNVLLIRVYAKEDCLEEMEKSINDAFEH 396 (513)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~ 396 (513)
|+.|.+.|+.|+..+|+.+|.+|++.|++++|.+++ .+|...++.+. +++.++.+|++.|++++|.++|++|.+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf---~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY---DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHH---HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999888665554 45555555444 4668999999999999999999999998
Q ss_pred CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010320 397 KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476 (513)
Q Consensus 397 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 476 (513)
+..+ +..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 679 G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 679 GIKL-GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 7665 577899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCCCC
Q 010320 477 WIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513 (513)
Q Consensus 477 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~S 513 (513)
+.++.+|++.|++++|.+++++|.+.|+.||..+|++
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyns 794 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999999999999999999999999999988864
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-57 Score=468.93 Aligned_cols=405 Identities=11% Similarity=0.136 Sum_probs=347.1
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCCCCHHHHHH
Q 010320 84 TVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGS--RPRLALEVLNWRRRQAGYGTPMTKEEYTK 161 (513)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~--~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ 161 (513)
.+..++..+ .+.+...++++++..+.... +..||..+|+.++.+|++ ..+.+.+++..|.+. |+.||..+|+.
T Consensus 89 ~~~~~i~~l-~~~g~~~~Al~~f~~m~~~~-~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~---g~~~~~~~~n~ 163 (697)
T PLN03081 89 SLCSQIEKL-VACGRHREALELFEILEAGC-PFTLPASTYDALVEACIALKSIRCVKAVYWHVESS---GFEPDQYMMNR 163 (697)
T ss_pred eHHHHHHHH-HcCCCHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCcchHHHHH
Confidence 455666665 34455556666665553211 356899999999999954 677788999888774 48899999999
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----------------
Q 010320 162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS---------------- 225 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---------------- 225 (513)
++.+|++.|++++|.++|++|.+ +|..+||++|.+|++.|++++|+++|++|.+. |+.||
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999976 58899999999999999999999999999764 55555
Q ss_pred -------------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010320 226 -------------------IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286 (513)
Q Consensus 226 -------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (513)
..+||+||++|++.|++++|.++|++|.+ +|..+||.||.+|++.|++++|+++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44557788889999999999999999964 6899999999999999999999999999
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc
Q 010320 287 MKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366 (513)
Q Consensus 287 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 366 (513)
|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.+|..+|++||++|+++|++++| .++|++|..++..
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A---~~vf~~m~~~d~~ 392 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA---RNVFDRMPRKNLI 392 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH---HHHHHhCCCCCee
Confidence 9999999999999999999999999999999999999999999999999999999999977755 4556677778877
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cCCcccHhhHHHHH
Q 010320 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-AGWRLCRSLYHSKM 445 (513)
Q Consensus 367 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~li 445 (513)
+| + .||.+|++.|+.++|.++|++|.+.|..| +..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++|
T Consensus 393 t~-n-~lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 393 SW-N-ALIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred eH-H-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 77 3 69999999999999999999999887766 577899999999999999999999999975 69999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC-CCCCC
Q 010320 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVP-VNAFP 512 (513)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 512 (513)
++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|.++++++. ++.|+ ..+|+
T Consensus 470 ~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~ 532 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYV 532 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchH
Confidence 9999999999999998876 478999999999999999999999999999986 44554 44553
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.8e-56 Score=455.77 Aligned_cols=371 Identities=12% Similarity=0.133 Sum_probs=316.8
Q ss_pred cccCchhHHHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhcc------
Q 010320 115 RRHSNGYAFVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKH------ 186 (513)
Q Consensus 115 ~~~p~~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~------ 186 (513)
|..||..+|+.++..++ +..+.|.++|+.|. .||..+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 153 g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 225 (697)
T PLN03081 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225 (697)
T ss_pred CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh
Confidence 44566677777776664 35566666666552 2466666666666666666666666666665544
Q ss_pred -----------------------------C-CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010320 187 -----------------------------L-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236 (513)
Q Consensus 187 -----------------------------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~ 236 (513)
. +|..+||+||.+|++.|++++|.++|++|. .+|..+||++|.+|
T Consensus 226 t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li~~y 300 (697)
T PLN03081 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGY 300 (697)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----CCChhHHHHHHHHH
Confidence 3 256678999999999999999999999996 36999999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010320 237 GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRME 316 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 316 (513)
++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+.|+.||..+|+.|+.+|++.|++++|.
T Consensus 301 ~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~ 380 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccc--hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010320 317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPW--LNVLLIRVYAKEDCLEEMEKSINDAF 394 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~ 394 (513)
++|++|.+ +|..+||+||.+|++.|+.++|.++++ +|...+..|. ++..++.+|++.|.+++|.++|++|.
T Consensus 381 ~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~---~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 381 NVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFE---RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHH---HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999975 688999999999999998776655554 4444455444 35589999999999999999999998
Q ss_pred hcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010320 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKK 474 (513)
Q Consensus 395 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 474 (513)
+.....|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|..+++++.+.+ +.+..
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~ 529 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLN 529 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCc
Confidence 86555556788999999999999999999998865 688999999999999999999999999999997654 33578
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCC
Q 010320 475 TFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV 508 (513)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 508 (513)
+|..|+..|++.|++++|.+++++|++.|++...
T Consensus 530 ~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 530 NYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 9999999999999999999999999999997543
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.5e-56 Score=466.56 Aligned_cols=383 Identities=17% Similarity=0.183 Sum_probs=280.8
Q ss_pred ccCchhHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHH
Q 010320 116 RHSNGYAFVELMKQLGS--RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTY 193 (513)
Q Consensus 116 ~~p~~~~~~~~l~~~~~--~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 193 (513)
..||.++|+.++++|++ ....+.+++..+.+ .|+.||..+|+.||.+|++.|++++|.++|++|.+ +|..+|
T Consensus 183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~ 256 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR---FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISW 256 (857)
T ss_pred CCCChhHHHHHHHHhCCccchhhHHHHHHHHHH---cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchh
Confidence 34455555444444432 22233344443333 24566666777888888888888888888888875 477888
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--------------
Q 010320 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP-------------- 259 (513)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------------- 259 (513)
|++|.+|++.|++++|+++|++|... |+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.|
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 88888888888888888888888864 777776666666666666555555555555555555544
Q ss_pred -----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010320 260 -----------------NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322 (513)
Q Consensus 260 -----------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 322 (513)
|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|
T Consensus 336 ~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred cCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 455556666666666777777777777888888888888888888888888888888888888
Q ss_pred HhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 010320 323 KHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTT 402 (513)
Q Consensus 323 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 402 (513)
.+.|..++..+|++||++|++.|++++ +.++|++|.+++..+|. .+|.+|++.|+.++|.++|++|... ..|+
T Consensus 416 ~~~g~~~~~~~~n~Li~~y~k~g~~~~---A~~vf~~m~~~d~vs~~--~mi~~~~~~g~~~eA~~lf~~m~~~--~~pd 488 (857)
T PLN03077 416 ERKGLISYVVVANALIEMYSKCKCIDK---ALEVFHNIPEKDVISWT--SIIAGLRLNNRCFEALIFFRQMLLT--LKPN 488 (857)
T ss_pred HHhCCCcchHHHHHHHHHHHHcCCHHH---HHHHHHhCCCCCeeeHH--HHHHHHHHCCCHHHHHHHHHHHHhC--CCCC
Confidence 888888888999999999999997775 45556778888887773 6999999999999999999999863 4556
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc------------------------------ccHhhHHHHHHHHHhcC
Q 010320 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR------------------------------LCRSLYHSKMVMYASQR 452 (513)
Q Consensus 403 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------------------------------p~~~~~~~li~~~~~~g 452 (513)
..+|+.++.+|++.|+++.+.+++..+.+.|+. +|..+||++|.+|++.|
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G 568 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHG 568 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcC
Confidence 778888888777777777777777776666654 45566667777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-HCCCCCCCCCCC
Q 010320 453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC-KNGYDVPVNAFP 512 (513)
Q Consensus 453 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~ 512 (513)
+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+
T Consensus 569 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 777777777777777777777777777777777777777777777776 567777776664
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-54 Score=457.98 Aligned_cols=428 Identities=14% Similarity=0.125 Sum_probs=348.8
Q ss_pred hhhhhhcccCCCCCChhhhhh-h----HHHHHHHHHHHhhcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHHc--C
Q 010320 60 PTLVRLLSETLTYPDARVRKD-L----TQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLG--S 132 (513)
Q Consensus 60 ~~l~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~--~ 132 (513)
+.++..+.+.+....+....+ + ..+++.++..+ .+.+...++++++.++.. .+..||..+|+.++.+|+ +
T Consensus 226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~-~~~g~~~eAl~lf~~M~~--~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGY-FENGECLEGLELFFTMRE--LSVDPDLMTITSVISACELLG 302 (857)
T ss_pred hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHH-HhCCCHHHHHHHHHHHHH--cCCCCChhHHHHHHHHHHhcC
Confidence 667777777766555444322 1 13456677766 444555666666666632 256889999999999885 4
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHH
Q 010320 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL 212 (513)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 212 (513)
+.+.|.+++..+.+. |+.||..+|+.||.+|++.|++++|.++|++|.. +|..+||++|.+|++.|++++|+++
T Consensus 303 ~~~~a~~l~~~~~~~---g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 303 DERLGREMHGYVVKT---GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred ChHHHHHHHHHHHHh---CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 677788888888764 4888999999999999999999999999999875 4888999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC
Q 010320 213 FRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV 292 (513)
Q Consensus 213 ~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 292 (513)
|++|.+. |+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+||.||.+|++.|++++|.++|++|.+
T Consensus 377 f~~M~~~-g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--- 452 (857)
T PLN03077 377 YALMEQD-NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--- 452 (857)
T ss_pred HHHHHHh-CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---
Confidence 9999876 899999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHH
Q 010320 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVL 372 (513)
Q Consensus 293 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 372 (513)
+|..+|+.+|.+|++.|+.++|.++|++|.+ +..||..+|+.++.+|++.|.++.+.+++..+.+..-... ...++.
T Consensus 453 -~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~-~~~~na 529 (857)
T PLN03077 453 -KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD-GFLPNA 529 (857)
T ss_pred -CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc-ceechH
Confidence 5777888888888888888888888888875 4788888888888888888888877777666555332221 222446
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010320 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 452 (513)
++.+|++.|++++|.++|+++ .++..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 888899999999998888876 23567899999999999999999999999988888999999999999999999
Q ss_pred CHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCCC
Q 010320 453 RVEEMESVLKEME-NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFP 512 (513)
Q Consensus 453 ~~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 512 (513)
++++|.++|++|. +.|+.|+..+|+.++++|++.|++++|.+++++| .++||..+|+
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~ 661 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWG 661 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHH
Confidence 9999999999988 6788899999999999999999999999888887 3778877764
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=4.8e-22 Score=214.55 Aligned_cols=332 Identities=11% Similarity=0.033 Sum_probs=171.7
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010320 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~ 235 (513)
...+..+...|.+.|++++|.++++.+.+..+.+...|..+..+|...|++++|++.|+++.+. .+.+...+..+..+
T Consensus 567 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 644 (899)
T TIGR02917 567 IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADA 644 (899)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Confidence 3334444444444444444444444444433334444444444444455555555555444432 12233444444444
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010320 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 315 (513)
+.+.|++++|..+|+++.+... .+..+|..+...+...|++++|.++++.+.+.+ ..+...+..+...+...|++++|
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHH
Confidence 4445555555555554444321 134444445555555555555555555554433 22344444555555555555555
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320 316 EKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE 395 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 395 (513)
.+.|+.+.+.+ |+..++..+..++.+.|++++|.+.++.+.+..+.+... ...+...|...|++++|.++|+++.+
T Consensus 723 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 723 IQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL--RTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 55555555432 222344445555555555555544444333332222211 22355555566666666666666655
Q ss_pred cCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 010320 396 HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKT 475 (513)
Q Consensus 396 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 475 (513)
.. |.+..+++.+...+...|+ .+|+++++++.+... -+..++..+...+...|++++|..+|+++.+.+. .+..+
T Consensus 799 ~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~ 873 (899)
T TIGR02917 799 KA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAI 873 (899)
T ss_pred hC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHH
Confidence 32 3344555666666666666 556666666554332 1344455566666777777777777777776653 36677
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320 476 FWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 476 ~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
+..+..++.+.|++++|.+++++|+
T Consensus 874 ~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 874 RYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777777777777777777765
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=2.7e-21 Score=208.69 Aligned_cols=356 Identities=10% Similarity=-0.000 Sum_probs=239.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHH
Q 010320 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS 211 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 211 (513)
++++.|.+.++.+... .+.+..++..+...+.+.|+.++|..+|+++.+.++.+...+..++..|.+.|++++|.+
T Consensus 513 g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTI----DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred CCHHHHHHHHHHHHHh----CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHH
Confidence 4555566665555442 133555666666666666666666666666665554455666666666666667777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010320 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291 (513)
Q Consensus 212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 291 (513)
+++.+... .+.+..+|..+..++.+.|++++|...|+++.+... .+...+..+..++.+.|++++|.++|+++.+..
T Consensus 589 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 589 ILNEAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 76666642 345566677777777777777777777777765432 245566666777777777777777777766532
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHH
Q 010320 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371 (513)
Q Consensus 292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (513)
+.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|.+.++......... .. ..
T Consensus 666 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~--~~ 740 (899)
T TIGR02917 666 -PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QN--AI 740 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hH--HH
Confidence 2236667777777777777777777777776653 3455566667777777777777666665554443333 11 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010320 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (513)
.+..++...|++++|.+.+.++.+. .|.+...+..+...|...|++++|.++|+++.+... .+...++.+...+...
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 4677777788888888888777764 344566777778888888888888888888876553 4667777788888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010320 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 504 (513)
|+ .+|+.+++++.+.. +-+..++..+...+...|++++|.++++++.+.+.
T Consensus 818 ~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred Cc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 88 77888888877654 34556677888888889999999999999888764
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=4e-21 Score=186.31 Aligned_cols=301 Identities=14% Similarity=0.076 Sum_probs=208.9
Q ss_pred HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCC
Q 010320 165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS---IVTYNTLISVFGRLLL 241 (513)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~g~ 241 (513)
.+...|++++|...|+++.+.++.+..++..+...+...|++++|..+++.+... +..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCCC
Confidence 4456677777888888777766556677777777777777777787777777653 21111 2456677777777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCChHHHHH
Q 010320 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD----TNTYLLLLRGYAHSGNLPRMEK 317 (513)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~ 317 (513)
++.|..+|+++.+... .+..+++.++..+.+.|++++|.+.++.+.+.+-.++ ...+..+...+.+.|++++|.+
T Consensus 123 ~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 7777777777775432 3566777777777777777777777777766442221 1234455556666677777777
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010320 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 397 (513)
+++++.+.. +.+...+ ..+...+.+.|++++|.++|+++....
T Consensus 202 ~~~~al~~~-p~~~~~~------------------------------------~~la~~~~~~g~~~~A~~~~~~~~~~~ 244 (389)
T PRK11788 202 LLKKALAAD-PQCVRAS------------------------------------ILLGDLALAQGDYAAAIEALERVEEQD 244 (389)
T ss_pred HHHHHHhHC-cCCHHHH------------------------------------HHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 776665532 1111111 136667777788888888888777643
Q ss_pred CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010320 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW 477 (513)
Q Consensus 398 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 477 (513)
... ...+++.++.+|...|++++|.+.++++.+.. |+...+..++..+.+.|++++|..+++++.+. .|+..+++
T Consensus 245 p~~-~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~ 319 (389)
T PRK11788 245 PEY-LSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFH 319 (389)
T ss_pred hhh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHH
Confidence 221 23457778888888999999999988887654 55566678888888999999999999888765 47888888
Q ss_pred HHHHHHHh---cCCHhHHHHHHHHHHHCCCCCCCC
Q 010320 478 IMYYAYAT---CGQRRKVNQVLGLMCKNGYDVPVN 509 (513)
Q Consensus 478 ~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~ 509 (513)
.++..+.. .|+.+++..++++|.+.+++|++.
T Consensus 320 ~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 320 RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 88877764 558888999999999888887764
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=5e-20 Score=178.66 Aligned_cols=303 Identities=13% Similarity=0.066 Sum_probs=227.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC----HhHHHHHHHH
Q 010320 124 VELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT----IGTYNALLGA 199 (513)
Q Consensus 124 ~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~----~~~~~~li~~ 199 (513)
..+.....++.+.|...|+.+.+.. +.+..++..+...+.+.|++++|.++++.+...+..+ ...+..+...
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD----PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 4444555788999999999988742 3467789999999999999999999999998764322 3578899999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcc
Q 010320 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV----FTYNYLIAGYMTAW 275 (513)
Q Consensus 200 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g 275 (513)
|.+.|++++|..+|+++.+. -+.+..+++.++..+.+.|++++|.+.++++.+.+..++. ..|..+...+.+.|
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999863 3557789999999999999999999999999986644322 24566778889999
Q ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010320 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA 355 (513)
Q Consensus 276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 355 (513)
++++|.++|+++.+.. ..+...+..+...+.+.|++++|.++++++.+.+......+++.
T Consensus 195 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~------------------- 254 (389)
T PRK11788 195 DLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPK------------------- 254 (389)
T ss_pred CHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHH-------------------
Confidence 9999999999998743 22467888899999999999999999999887532211222333
Q ss_pred HHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Q 010320 356 LMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR 435 (513)
Q Consensus 356 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 435 (513)
++.+|...|++++|...++++.+... . ...+..++..+.+.|++++|..+++++.+. .
T Consensus 255 -----------------l~~~~~~~g~~~~A~~~l~~~~~~~p--~-~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~ 312 (389)
T PRK11788 255 -----------------LMECYQALGDEAEGLEFLRRALEEYP--G-ADLLLALAQLLEEQEGPEAAQALLREQLRR--H 312 (389)
T ss_pred -----------------HHHHHHHcCCHHHHHHHHHHHHHhCC--C-chHHHHHHHHHHHhCCHHHHHHHHHHHHHh--C
Confidence 45555666666666666666665422 2 223466777777777777777777776654 4
Q ss_pred ccHhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHH
Q 010320 436 LCRSLYHSKMVMYAS---QRRVEEMESVLKEMENYKIDCSKK 474 (513)
Q Consensus 436 p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~ 474 (513)
|+...++.++..+.. .|+.+++..++++|.++++.|++.
T Consensus 313 P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 313 PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 666677766666554 447777777777777766666554
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=7e-18 Score=171.75 Aligned_cols=323 Identities=6% Similarity=-0.063 Sum_probs=254.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
.++++.|+.+++.+... .+-+...+..++.++...|++++|.+.|+++.+..+.+...|..+...+...|++++|+
T Consensus 55 ~g~~~~A~~l~~~~l~~----~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 55 KDETDVGLTLLSDRVLT----AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred cCCcchhHHHhHHHHHh----CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence 67888999998877664 33356667777777788999999999999999987778889999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010320 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
+.|++..+. -+.+...+..+...+...|++++|...++.+...... +...+..+ ..+.+.|++++|..+++.+.+.
T Consensus 131 ~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 131 DLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence 999999864 2345678888999999999999999999988765443 33334333 3478899999999999998775
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhH----HHHHHHHHHhCCCCCcc
Q 010320 291 PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDR----IKKIEALMRLIPEKEYR 366 (513)
Q Consensus 291 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~~ 366 (513)
.-.++...+..+..++...|++++|...++...+.. +.+...+..+...|...|++++ |...++...+..+....
T Consensus 207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~ 285 (656)
T PRK15174 207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR 285 (656)
T ss_pred CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH
Confidence 433445556666788899999999999999998764 4567788889999999999885 55555555555444443
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH-hhHHHHH
Q 010320 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR-SLYHSKM 445 (513)
Q Consensus 367 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~li 445 (513)
.+ ..+...+...|++++|...+++.+.. .|.+...+..+...+...|++++|.+.++.+.+.. |+. ..+..+.
T Consensus 286 a~--~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a 359 (656)
T PRK15174 286 IV--TLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAA 359 (656)
T ss_pred HH--HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHH
Confidence 33 25888899999999999999998884 35556667788899999999999999999887654 333 3344456
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC
Q 010320 446 VMYASQRRVEEMESVLKEMENYK 468 (513)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~~~~ 468 (513)
.++...|+.++|...|++..+..
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC
Confidence 77889999999999999988754
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=3.2e-17 Score=167.51 Aligned_cols=359 Identities=9% Similarity=-0.064 Sum_probs=278.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
.++++.|...|+.... ..|+...|..+..+|.+.|++++|++.++...+..+.+...|..+..+|...|++++|+
T Consensus 140 ~~~~~~Ai~~y~~al~-----~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIE-----CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred cCCHHHHHHHHHHHHh-----cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3688899999988765 45678889999999999999999999999999887778889999999999999999998
Q ss_pred HHHHHHHHhCCC---------------------------CC----CHHHHHHH---------------------------
Q 010320 211 SLFRDLKKEANI---------------------------SP----SIVTYNTL--------------------------- 232 (513)
Q Consensus 211 ~~~~~m~~~~g~---------------------------~p----~~~~~~~l--------------------------- 232 (513)
.-|.......+. .| ........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 215 LDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence 766544321110 00 00000000
Q ss_pred HHHH------HhcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHH
Q 010320 233 ISVF------GRLLLVDHMEAAFQEIKDSN-LSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLL 303 (513)
Q Consensus 233 i~~~------~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll 303 (513)
+... ...+++++|.+.|++..+.+ ..| +...|+.+...+...|++++|+..|++..+. .|+ ...|..+.
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la 372 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRA 372 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHH
Confidence 0000 12257889999999998764 223 4567888888999999999999999999874 455 66888999
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCH
Q 010320 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL 383 (513)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 383 (513)
..+...|++++|...|+...+.. +.+..+|..+...+...|++++|...++...++.+.....+. .+...+.+.|++
T Consensus 373 ~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~--~la~~~~~~g~~ 449 (615)
T TIGR00990 373 SMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI--QLGVTQYKEGSI 449 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH--HHHHHHHHCCCH
Confidence 99999999999999999998863 456788899999999999999999988887777666555543 478888999999
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh------hHHHHHHHHHhcCCHHHH
Q 010320 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS------LYHSKMVMYASQRRVEEM 457 (513)
Q Consensus 384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~~~li~~~~~~g~~~~A 457 (513)
++|+..|++.+.. .|.+...++.+...+...|++++|.+.|++..+.....+.. .++.....+...|++++|
T Consensus 450 ~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 450 ASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999998874 45567778899999999999999999999987654321111 122222334457999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320 458 ESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 458 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
.+++++....+ +.+...+..+...+.+.|++++|+++|++..+.
T Consensus 528 ~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 528 ENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999988765 345567889999999999999999999987654
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=5.5e-17 Score=165.28 Aligned_cols=290 Identities=10% Similarity=-0.013 Sum_probs=201.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
.++.+.|.+.++.+... .|-+...+..+...+.+.|++++|.+.+++..+..+.+...+..+...+...|++++|.
T Consensus 89 ~g~~~~A~~~l~~~l~~----~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~ 164 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAV----NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAI 164 (656)
T ss_pred cCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHH
Confidence 56777888888777653 23456677777778888888888888888887766557778888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010320 211 SLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
..++.+... .+.+...+..+ ..+...|++++|+..++.+.+....++...+..+...+.+.|++++|+..|++..+.
T Consensus 165 ~~~~~~~~~--~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 165 SLARTQAQE--VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHHHHHh--CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 888877653 12233333333 346777888888888888776543344455555667777888888888888887764
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc
Q 010320 291 PVMPDTNTYLLLLRGYAHSGNLPR----MEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366 (513)
Q Consensus 291 g~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 366 (513)
. .-+...+..+...+...|++++ |...|+...+.. +.+...+..+...+.+.|++++|...++......+....
T Consensus 242 ~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~ 319 (656)
T PRK15174 242 G-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY 319 (656)
T ss_pred C-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 3 2246677777788888888775 677888777653 346667778888888888888777776666665444333
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010320 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433 (513)
Q Consensus 367 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 433 (513)
.+ ..+...+...|++++|...|+++..... .+...+..+..++...|+.++|.+.|++..+..
T Consensus 320 a~--~~La~~l~~~G~~~eA~~~l~~al~~~P--~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 320 VR--AMYARALRQVGQYTAASDEFVQLAREKG--VTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HH--HHHHHHHHHCCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33 2467777888888888888887776432 233334445566777888888888888776543
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.81 E-value=3.8e-15 Score=162.30 Aligned_cols=328 Identities=8% Similarity=-0.013 Sum_probs=198.3
Q ss_pred HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 010320 165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDH 244 (513)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 244 (513)
.+.+.|++++|.+.|++..+..+.+...+..+...+...|++++|++.|++..+. .+.+...+..+...+. .++.++
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-hcCHHH
Confidence 3455666666666666666655445556666666666666666666666666543 1222333333333332 122333
Q ss_pred HHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHHH
Q 010320 245 MEAAFQEIKDSNL--------SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPRM 315 (513)
Q Consensus 245 A~~~~~~m~~~g~--------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a 315 (513)
|+.+++.+..... ......+..+...+...|++++|++.|++..+. .|+ ...+..+...|.+.|++++|
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3333332211000 000122344555566666666666666666553 232 44555566666666666666
Q ss_pred HHHHHHHHhccCCCcHHHHH--------------------------------------------HHHHHHHhcCChhHHH
Q 010320 316 EKIYELVKHHVDGKEFPLIR--------------------------------------------AMICAYSKCSVTDRIK 351 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~--------------------------------------------~li~~~~~~g~~~~a~ 351 (513)
...++++.+.. +.+...+. .+...+...|+.++|.
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 66666655432 11222222 2233444555555444
Q ss_pred HHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 010320 352 KIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431 (513)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 431 (513)
++++ . .+.+... ...+...+.+.|++++|++.|++.++. .|.+...+..+...+...|+.++|++.++.+.+
T Consensus 594 ~~l~---~-~p~~~~~--~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 594 ALLR---Q-QPPSTRI--DLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHH---h-CCCCchH--HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 4433 1 1122222 235788889999999999999999884 455677788999999999999999999998775
Q ss_pred cCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHH-HCCCC
Q 010320 432 AGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI--DC---SKKTFWIMYYAYATCGQRRKVNQVLGLMC-KNGYD 505 (513)
Q Consensus 432 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~ 505 (513)
... .+...+..+..++...|++++|.++++++....- .| +...+..+...+...|++++|++.|++.. ..|+.
T Consensus 666 ~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 666 TAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred cCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 432 2455566777888899999999999999886532 22 23466677888999999999999998874 45565
Q ss_pred CC
Q 010320 506 VP 507 (513)
Q Consensus 506 p~ 507 (513)
|.
T Consensus 745 ~~ 746 (1157)
T PRK11447 745 PT 746 (1157)
T ss_pred CC
Confidence 44
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=1.7e-15 Score=135.40 Aligned_cols=342 Identities=15% Similarity=0.165 Sum_probs=228.7
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 010320 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~ 230 (513)
.+-+..+|..+|.++++--..+.|.+++++-.....+ +..+||.+|.+-.-... .+++.+|... .+.||..|+|
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisq-km~Pnl~TfN 277 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQ-KMTPNLFTFN 277 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHh-hcCCchHhHH
Confidence 3447778888888888888888888888887776555 88888888876544332 6788888876 7888888999
Q ss_pred HHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH-HHHHHHHHHc----CCCCC----CHH
Q 010320 231 TLISVFGRLLLVDH----MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK-VEEIYQMMKA----GPVMP----DTN 297 (513)
Q Consensus 231 ~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~g~~p----~~~ 297 (513)
+++++..+.|+++. |.+++.+|++.|++|...+|..+|..+++.++..+ |..++.++.. +-++| |..
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~ 357 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNK 357 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhH
Confidence 98888888887764 45778888888888888888888888888877654 4444444433 22332 467
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc----cCCCcH---HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccch-
Q 010320 298 TYLLLLRGYAHSGNLPRMEKIYELVKHH----VDGKEF---PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWL- 369 (513)
Q Consensus 298 t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~- 369 (513)
.|...+..|.+..+.+-|.++..-.... .+.|+. ..|..+..+.|+.. .....+..+..+.+.-+.+..
T Consensus 358 FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~e---s~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 358 FFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQME---SIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccceecCCch
Confidence 7778888888888888888887766542 123332 23455666666654 334566677777766555442
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC-cH--------HH-----HHHHHH-------
Q 010320 370 -NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN-AV--------DK-----LANFVK------- 427 (513)
Q Consensus 370 -~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~--------~~-----a~~~~~------- 427 (513)
...++.+....|+++-.-+++..+..-|.... ..+-.-++.-+++.+ +. .. |..+++
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r-~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~ 513 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR-SDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPI 513 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh-HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 22466677777888888888888887664332 112223344444433 11 11 111111
Q ss_pred HHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010320 428 RAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKI----DCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 428 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
+|.+..+ .....+.+.-.+.+.|+.++|.++|..+.+++- .|......-+++...+.+....|..+++-|...+
T Consensus 514 R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 514 RQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 2333333 344567777788899999999999998865432 2334444467777788888999999998886655
Q ss_pred C
Q 010320 504 Y 504 (513)
Q Consensus 504 ~ 504 (513)
.
T Consensus 592 ~ 592 (625)
T KOG4422|consen 592 L 592 (625)
T ss_pred c
Confidence 4
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.81 E-value=4.4e-15 Score=161.80 Aligned_cols=329 Identities=11% Similarity=-0.011 Sum_probs=222.0
Q ss_pred HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH------------
Q 010320 163 IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN------------ 230 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~------------ 230 (513)
...+...|++++|+..|++..+..+.+...+..+...+.+.|++++|+..|++..+...-.++...|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 34455667777777777777766555677777777777777777777777777665311111111111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHH-----------
Q 010320 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNT----------- 298 (513)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t----------- 298 (513)
.....+.+.|++++|+..|++..+... .+...+..+...+...|++++|++.|++..+. .|+ ...
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 123345567777777777777776533 24556666667777777777777777776652 222 222
Q ss_pred -------------------------------HHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010320 299 -------------------------------YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 299 -------------------------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
+..+...+...|++++|.+.|++..+.. +.+...+..+...|.+.|++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 2223445567899999999999988763 34566778889999999999
Q ss_pred hHHHHHHHHHHhCCCCCcccchHH------------------------------------------HHHHHHHhcCCHHH
Q 010320 348 DRIKKIEALMRLIPEKEYRPWLNV------------------------------------------LLIRVYAKEDCLEE 385 (513)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~~~~------------------------------------------~li~~~~~~~~~~~ 385 (513)
++|...++.+.+..+.+....... .+...+...|+.++
T Consensus 512 ~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 512 SQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 998888777665544333222100 11223444455555
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010320 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465 (513)
Q Consensus 386 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (513)
|+++++ ..|.+...+..+...+.+.|++++|++.|+++.+... .+...+..+...|...|++++|.+.++...
T Consensus 592 A~~~l~------~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 592 AEALLR------QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHH------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 555544 1233445567788889999999999999999887653 367788889999999999999999999887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010320 466 NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 466 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
+.. +.+..++..+..++...|++++|.++++++....
T Consensus 665 ~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 665 ATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred ccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 653 3455667778889999999999999999987653
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.81 E-value=3.7e-16 Score=145.77 Aligned_cols=408 Identities=11% Similarity=0.085 Sum_probs=301.5
Q ss_pred hhhHHHHHHHHHHHhhcCCChhHHHHHHhhhCCccccccC-chhHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCCC
Q 010320 79 KDLTQTVSALRDELLANVDDLDKVFRVLDEKGSCLFRRHS-NGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMT 155 (513)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~g~~~~ 155 (513)
++..+.+..+.+.+ +..++.+.+++....+- ...| ....|..+-.++ .++.+.|.+.|....+ +-|+
T Consensus 113 ~q~ae~ysn~aN~~-kerg~~~~al~~y~~ai----el~p~fida~inla~al~~~~~~~~a~~~~~~alq-----lnP~ 182 (966)
T KOG4626|consen 113 PQGAEAYSNLANIL-KERGQLQDALALYRAAI----ELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ-----LNPD 182 (966)
T ss_pred chHHHHHHHHHHHH-HHhchHHHHHHHHHHHH----hcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh-----cCcc
Confidence 33444444444444 55566666666666553 2244 334566555555 4577778887776655 4455
Q ss_pred HHHHHHHH-HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 010320 156 KEEYTKGI-KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IVTYNTLI 233 (513)
Q Consensus 156 ~~~~~~ll-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~~~li 233 (513)
.....+-+ ..+-..|++++|...|.+..+..+.=...|+.|...+-..|+...|+.-|++..+ +.|+ ...|-.|.
T Consensus 183 l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLG 259 (966)
T KOG4626|consen 183 LYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLG 259 (966)
T ss_pred hhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHH
Confidence 55444433 3444579999999999988876554677899999999999999999999999985 4676 46889999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCC
Q 010320 234 SVFGRLLLVDHMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGN 311 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~ 311 (513)
..|...+.++.|...+.+.... .| ...+|..|...|-..|++|-|+..|++..+ +.|+ ...|+.|..++-..|+
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGS 335 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccc
Confidence 9999999999999999888764 34 457788888889999999999999999988 5677 7899999999999999
Q ss_pred hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHH
Q 010320 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN 391 (513)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 391 (513)
+.+|...+....... +......+.|...|...|.++.|...+...-+....-..+. + -|...|-+.|++++|+..++
T Consensus 336 V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~-n-NLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAH-N-NLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred hHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhh-h-hHHHHHHhcccHHHHHHHHH
Confidence 999999999988863 34566778899999999999888777665544433333333 3 38889999999999999999
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010320 392 DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC 471 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 471 (513)
+.++ ..|+....|+.+...|-..|+++.|.+.+.+.+..+.. -.+.++.|...|-..|++.+|+.-|++.... +|
T Consensus 413 ealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kP 487 (966)
T KOG4626|consen 413 EALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KP 487 (966)
T ss_pred HHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CC
Confidence 9988 67778888999999999999999999999998865532 3567888999999999999999999998864 45
Q ss_pred C-HHHHHHHHHHHH---hcCCH----hHHHHHHHHHHHCCCCCCCCCC
Q 010320 472 S-KKTFWIMYYAYA---TCGQR----RKVNQVLGLMCKNGYDVPVNAF 511 (513)
Q Consensus 472 ~-~~~~~~li~~~~---~~g~~----~~A~~~~~~m~~~g~~p~~~t~ 511 (513)
| ...|--++.+.- .-.++ ++..++.++-.+...-|++..+
T Consensus 488 DfpdA~cNllh~lq~vcdw~D~d~~~~kl~sivrdql~~~rlpsvhP~ 535 (966)
T KOG4626|consen 488 DFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRDQLEKNRLPSVHPH 535 (966)
T ss_pred CCchhhhHHHHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCCccCcc
Confidence 4 234444444432 22222 3334444444444455665543
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=9.9e-15 Score=152.06 Aligned_cols=393 Identities=10% Similarity=-0.026 Sum_probs=272.6
Q ss_pred hcCCChhHHHHHHhhhCCccccccCchhHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCC
Q 010320 94 ANVDDLDKVFRVLDEKGSCLFRRHSNGYAFVELMKQL--GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINN 171 (513)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~--~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 171 (513)
...++..++...+.+.... ...+...+..+...+ .++.+.|..+++..... .|.+...+..+...+...|+
T Consensus 26 ~~~g~~~~A~~~~~~~~~~---~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVH---MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL----EPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCC
Confidence 4445666666666665310 122332344443333 56778888888877654 24466777788888889999
Q ss_pred HHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 010320 172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQE 251 (513)
Q Consensus 172 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 251 (513)
+++|+..+++..+..+.+.. +..+..++...|+.++|+..++++.+. -+-+...+..+..++...|..+.|++.++.
T Consensus 99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 99999999998887666777 888888888999999999999998864 233455666777788888888888888876
Q ss_pred HHHCCCCCCH------HHHHHHHHHHH-----HccCH---HHHHHHHHHHHcC-CCCCCHH-HH----HHHHHHHHhcCC
Q 010320 252 IKDSNLSPNV------FTYNYLIAGYM-----TAWMW---GKVEEIYQMMKAG-PVMPDTN-TY----LLLLRGYAHSGN 311 (513)
Q Consensus 252 m~~~g~~p~~------~~~~~li~~~~-----~~g~~---~~a~~~~~~m~~~-g~~p~~~-t~----~~ll~~~~~~g~ 311 (513)
... .|+. .....++.... ..+++ ++|++.++.+.+. .-.|+.. .+ ...+.++...|+
T Consensus 176 ~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 176 ANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred CCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 664 2331 11222222221 12234 6788888888753 2233321 11 111445567799
Q ss_pred hHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc--cchHHHHHHHHHhcCCHHHHHH
Q 010320 312 LPRMEKIYELVKHHVDG-KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR--PWLNVLLIRVYAKEDCLEEMEK 388 (513)
Q Consensus 312 ~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~ 388 (513)
+++|+..|+.+.+.+.. |+. ....+...|...|++++|...++.+......... ......+..++...|++++|.+
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 99999999999987532 322 2222567899999999998887766544332211 1112246667889999999999
Q ss_pred HHHHHHhcCC-----------CCc--hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHH
Q 010320 389 SINDAFEHKT-----------SVT--TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVE 455 (513)
Q Consensus 389 ~~~~~~~~~~-----------~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 455 (513)
+++++..... .|. ....+..+...+...|+.++|+++++++.... +-+...+..+...+...|+++
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 9999887532 011 12345567778889999999999999997654 335778889999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320 456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
+|++.+++..... +-+...+..+...+...|++++|..+++++++.
T Consensus 411 ~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 411 AAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999998865 445677778888999999999999999999864
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=3.7e-16 Score=145.81 Aligned_cols=337 Identities=15% Similarity=0.076 Sum_probs=245.4
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH--------
Q 010320 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-------- 226 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-------- 226 (513)
-.++|..+..++-..|++++|+.+++.+.+..+..+..|-.+..++...|+.+.|...|.+..+ +.|+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchh
Confidence 4556666666666666666666666666666555666666666666666666666666665553 23333
Q ss_pred ---------------------------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHH
Q 010320 227 ---------------------------VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWG 278 (513)
Q Consensus 227 ---------------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 278 (513)
+.|+.|...+-..|+...|+..|++..+. .|+ ...|-.|...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcch
Confidence 23444555555666777777777776653 343 356666777777777777
Q ss_pred HHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010320 279 KVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357 (513)
Q Consensus 279 ~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 357 (513)
+|...|.+... ..|+ ...|..+...|...|.+|.|+..+++..+.. +.-...|+.|..++-..|++.++...+...
T Consensus 270 ~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 77777777665 3454 5667777777778888888888888877752 224567889999999999999888888877
Q ss_pred HhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc
Q 010320 358 RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC 437 (513)
Q Consensus 358 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~ 437 (513)
........... ++ |...|...|.+++|..+|...++ ..|.....++.|...|-+.|++++|+..+++... ++|+
T Consensus 347 L~l~p~hadam-~N-Lgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~ 420 (966)
T KOG4626|consen 347 LRLCPNHADAM-NN-LGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPT 420 (966)
T ss_pred HHhCCccHHHH-HH-HHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCch
Confidence 77776666665 33 88889999999999999988887 4455566788899999999999999999998875 3454
Q ss_pred -HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCC
Q 010320 438 -RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV 508 (513)
Q Consensus 438 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 508 (513)
...|+.+-..|-..|+.+.|.+.+.+...-+ +.=...++-|...|-..|+..+|+.-+++..+ ++||.
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 5678888889999999999999999888754 23356788899999999999999999998764 45553
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=4.3e-14 Score=144.56 Aligned_cols=337 Identities=6% Similarity=-0.093 Sum_probs=252.4
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.+......+.+.|++++|++.|++..+..+ +...|..+..+|.+.|++++|++.++...+. -+.+...|..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 345667778899999999999999887543 6778999999999999999999999999863 2335678999999999
Q ss_pred hcCChhHHHHHHHHHHHCCCC----------------------------C-CHHHHHHHHH-------------------
Q 010320 238 RLLLVDHMEAAFQEIKDSNLS----------------------------P-NVFTYNYLIA------------------- 269 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~----------------------------p-~~~~~~~li~------------------- 269 (513)
..|++++|+.-|......+-. | +...+..+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999998766544321100 0 0000000000
Q ss_pred -------HH----------HHccCHHHHHHHHHHHHcCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc
Q 010320 270 -------GY----------MTAWMWGKVEEIYQMMKAGP-VMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330 (513)
Q Consensus 270 -------~~----------~~~g~~~~a~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 330 (513)
++ ...+++++|.+.|++..+.+ ..| +...|..+...+...|++++|...++...+.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 00 11257889999999988754 334 35678888888899999999999999988763 334
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010320 331 FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV 410 (513)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 410 (513)
...|..+...+...|++++|...++...+..+.+...+ ..+...+...|++++|...|++.++. .|.+...+..+.
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~--~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la 440 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIY--YHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLG 440 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHH
Confidence 66788888899999999999888877766655554444 25788899999999999999999884 455666788888
Q ss_pred HHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CH-HHHHHHHHHHH
Q 010320 411 SSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC-----SK-KTFWIMYYAYA 484 (513)
Q Consensus 411 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~-~~~~~li~~~~ 484 (513)
..+.+.|++++|+..+++..+.. +-+...|+.+...+...|++++|.+.|++.....-.. +. ..++..+..+.
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 99999999999999999987654 2357788889999999999999999999988653111 11 11222223344
Q ss_pred hcCCHhHHHHHHHHHHHCC
Q 010320 485 TCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 485 ~~g~~~~A~~~~~~m~~~g 503 (513)
..|++++|.+++++..+..
T Consensus 520 ~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIID 538 (615)
T ss_pred HhhhHHHHHHHHHHHHhcC
Confidence 5799999999999887653
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=3.1e-14 Score=127.54 Aligned_cols=375 Identities=12% Similarity=0.152 Sum_probs=272.7
Q ss_pred HHHHHHHHHc-CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH--hcccCCHH-HHHHHHHHHHhcc-----------
Q 010320 122 AFVELMKQLG-SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKF--AGRINNVD-LAADLFAEAANKH----------- 186 (513)
Q Consensus 122 ~~~~~l~~~~-~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~g~~~-~a~~~~~~m~~~~----------- 186 (513)
+=+.+++-.+ +....+.-+|+.|+..+ ++-+...--.|++. |....++- .-.+.|-.|...|
T Consensus 118 ~E~nL~kmIS~~EvKDs~ilY~~m~~e~---~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 118 TENNLLKMISSREVKDSCILYERMRSEN---VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred chhHHHHHHhhcccchhHHHHHHHHhcC---CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 4456666663 46667888999888754 55566666555543 33333333 3345566665443
Q ss_pred --------CC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 010320 187 --------LK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL 257 (513)
Q Consensus 187 --------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 257 (513)
.| +..+|.+||.++|+--..+.|.+++++-... ..+.+..+||.+|.+-.-.- ..+++.+|....+
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSYSV----GKKLVAEMISQKM 269 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhc
Confidence 12 5678999999999999999999999999875 66899999999998754332 2789999999999
Q ss_pred CCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHh----ccCC
Q 010320 258 SPNVFTYNYLIAGYMTAWMWGK----VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR-MEKIYELVKH----HVDG 328 (513)
Q Consensus 258 ~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~----~~~~ 328 (513)
.||..|+|+++.+..+.|+++. |.+++.+|++-||.|...+|..+|..+++.++..+ +..++.++.. ..+.
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 9999999999999999998774 56788999999999999999999999999988755 4444444433 3445
Q ss_pred C----cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCccc------chHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010320 329 K----EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP------WLNVLLIRVYAKEDCLEEMEKSINDAFEHKT 398 (513)
Q Consensus 329 ~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 398 (513)
| |...|..-+..|.+..+.+-|.++..+++.-......+ .+|.-+....|.....+.-...|+.|.-.-.
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 5 23355667777888888899999988887654433322 2355677888888899999999998887644
Q ss_pred CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC-C--------HHH-----HHHHH---
Q 010320 399 SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR-R--------VEE-----MESVL--- 461 (513)
Q Consensus 399 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~--------~~~-----A~~~~--- 461 (513)
.| ...+..-++++....|.++-.-++|..++..|...+...-.-++..+++.. . +.. |..++
T Consensus 430 ~p-~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 430 FP-HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred cC-CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 44 455677788899999999999999999999887666665555555566544 1 111 11122
Q ss_pred ----HHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 010320 462 ----KEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVP 507 (513)
Q Consensus 462 ----~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 507 (513)
.+|...++ .....+...-.+.+.|..++|.+++..+.+.|-+..
T Consensus 509 e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 509 ESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred HhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 23443443 445677777788999999999999999977665543
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.72 E-value=1.4e-12 Score=136.01 Aligned_cols=365 Identities=12% Similarity=-0.005 Sum_probs=258.7
Q ss_pred HHhhcCCChhHHHHHHhhhCCccccccCc-hhHHHHHHHH--HcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhc
Q 010320 91 ELLANVDDLDKVFRVLDEKGSCLFRRHSN-GYAFVELMKQ--LGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAG 167 (513)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~l~~--~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~ 167 (513)
.+..+.++..++...+.+.- ...|+ ...+..+... -.++.+.|...++.+.+. .+.+.. +..+..++.
T Consensus 57 ~~~~~~g~~~~A~~~~~~al----~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~----~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 57 VAYRNLKQWQNSLTLWQKAL----SLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG----APDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHH-HHHHHHHHH
Confidence 34466677777777777743 22333 2223333333 367899999999988765 244666 888888999
Q ss_pred ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH----
Q 010320 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI------VTYNTLISVFG---- 237 (513)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~------~~~~~li~~~~---- 237 (513)
..|+.++|+..++++.+..+.+...+..+..++...|..++|++.++.... .|+. .....++....
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL----TPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhccccc
Confidence 999999999999999998877888888889999999999999999986653 2332 11222232222
Q ss_pred -hcCCh---hHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHHccCHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHH
Q 010320 238 -RLLLV---DHMEAAFQEIKDS-NLSPNVF-TY----NYLIAGYMTAWMWGKVEEIYQMMKAGPVM-PDTNTYLLLLRGY 306 (513)
Q Consensus 238 -~~g~~---~~A~~~~~~m~~~-g~~p~~~-~~----~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~ 306 (513)
..+++ ++|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+-. |+. .-..+..+|
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y 282 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY 282 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 12234 7788899988854 2223321 11 11144556779999999999999987632 332 222357789
Q ss_pred HhcCChHHHHHHHHHHHhccCCC---cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc----------c-cc--hH
Q 010320 307 AHSGNLPRMEKIYELVKHHVDGK---EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEY----------R-PW--LN 370 (513)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~-~~--~~ 370 (513)
...|++++|+.+|+.+.+..... .......+..++...|++++|.+.++.+....+... . .+ ..
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999999987653211 134566677788999999988877766655432111 0 11 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010320 371 VLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450 (513)
Q Consensus 371 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 450 (513)
..+...+...|++++|++.++++... .|.+...+..+...+...|++++|++.+++..+... -+...+......+.+
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P-d~~~l~~~~a~~al~ 439 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP-RNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHH
Confidence 24677888999999999999999884 455677899999999999999999999999887552 235666677778899
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH
Q 010320 451 QRRVEEMESVLKEMENYKIDCSKK 474 (513)
Q Consensus 451 ~g~~~~A~~~~~~m~~~~~~p~~~ 474 (513)
.|++++|+.+++++.+.. |+..
T Consensus 440 ~~~~~~A~~~~~~ll~~~--Pd~~ 461 (765)
T PRK10049 440 LQEWRQMDVLTDDVVARE--PQDP 461 (765)
T ss_pred hCCHHHHHHHHHHHHHhC--CCCH
Confidence 999999999999999753 4443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=3.7e-12 Score=130.65 Aligned_cols=393 Identities=11% Similarity=0.007 Sum_probs=249.7
Q ss_pred hcCCChhHHHHHHhhhCCccccccCchh--HHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhccc
Q 010320 94 ANVDDLDKVFRVLDEKGSCLFRRHSNGY--AFVELMK--QLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRI 169 (513)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~l~--~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 169 (513)
.+.++...+++.+.+.. ...|+.. .+ .++. ...+..+.|+..++..... .+........+...|...
T Consensus 45 ~r~Gd~~~Al~~L~qaL----~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p----~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 45 ARAGDTAPVLDYLQEES----KAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS----MNISSRGLASAARAYRNE 115 (822)
T ss_pred HhCCCHHHHHHHHHHHH----hhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC----CCCCHHHHHHHHHHHHHc
Confidence 34455556666666653 2244431 22 3322 2346777888877765411 222344444446678888
Q ss_pred CCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 010320 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAF 249 (513)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 249 (513)
|++++|.++|+++.+..+.+...+..++..+...++.++|++.++++... .|+...+-.++..+...++..+|++.+
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER---DPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---CcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999999998887777888888888889999999999999988864 567666655555554556666689999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHH--------------------------------------------
Q 010320 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ-------------------------------------------- 285 (513)
Q Consensus 250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~-------------------------------------------- 285 (513)
+++.+... -+...+..++.++.+.|-...|+++.+
T Consensus 193 ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 193 SEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 99988653 245555666666666555444443332
Q ss_pred ----HHHc-CCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010320 286 ----MMKA-GPVMPDT-----NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA 355 (513)
Q Consensus 286 ----~m~~-~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 355 (513)
.+.. .+-.|.. ....-.+-++...|++.++++.|+.+...+.+....+-.++.++|...+.+++|..+++
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 2221 1111221 11123345666777888888888888877655445566778888888887777777765
Q ss_pred HHHhCCCCC-ccc-c--hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------------CCchHHHHHHHHHHHHhcCc
Q 010320 356 LMRLIPEKE-YRP-W--LNVLLIRVYAKEDCLEEMEKSINDAFEHKT-------------SVTTVRIMRCIVSSYFRCNA 418 (513)
Q Consensus 356 ~~~~~~~~~-~~~-~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~~~~~~~li~~~~~~~~ 418 (513)
.+..-.... ..+ . ....|.-+|...+++++|..+++++.+... .+.-...+..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 543322110 100 1 023477778888888888888888776221 01112223445666777888
Q ss_pred HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010320 419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL 498 (513)
Q Consensus 419 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (513)
..+|++.++++.... +-|......+.+.+...|.+.+|.+.++.....+ +-+..+......++...|++++|..+.+.
T Consensus 432 l~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 432 LPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 888888888886554 3367777777788888888888888886666553 44566666777788888888888777766
Q ss_pred HHH
Q 010320 499 MCK 501 (513)
Q Consensus 499 m~~ 501 (513)
..+
T Consensus 510 l~~ 512 (822)
T PRK14574 510 VIS 512 (822)
T ss_pred HHh
Confidence 543
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.69 E-value=4.9e-12 Score=129.80 Aligned_cols=370 Identities=9% Similarity=-0.031 Sum_probs=256.1
Q ss_pred cCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCH--HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHH
Q 010320 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTK--EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYN 194 (513)
Q Consensus 117 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 194 (513)
.|+..-...++..-.++.+.|++.|+...+. .|+. ..+ .++..+...|+.++|+..+++.......+.....
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~-----~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA-----GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh-----CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 4454444455555578999999999988763 3343 234 8888888999999999999998832122344444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010320 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274 (513)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 274 (513)
.+...|...|++++|+++|+++.+. .+-|...+..++..+...++.++|++.++++... .|+...+-.++..+...
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~ 182 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhc
Confidence 4466899999999999999999975 2445677778889999999999999999999875 46666664444444445
Q ss_pred cCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHH---------------------------------
Q 010320 275 WMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYE--------------------------------- 320 (513)
Q Consensus 275 g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~--------------------------------- 320 (513)
++..+|++.++++.+.. | +...+..+..++.+.|-...|.++.+
T Consensus 183 ~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 183 DRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred chHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 66667999999999853 5 46666777777776665544443333
Q ss_pred ---------------HHHhc-cCCCc-HH----HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--cccchHHHHHHHH
Q 010320 321 ---------------LVKHH-VDGKE-FP----LIRAMICAYSKCSVTDRIKKIEALMRLIPEKE--YRPWLNVLLIRVY 377 (513)
Q Consensus 321 ---------------~~~~~-~~~~~-~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~ 377 (513)
.+... +..|. .. ...-.+-++.+.|+.. ++.+.++.+...+ +.++.-..+.++|
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~---~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA---DLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH---HHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 22211 11121 11 1122333455556444 4445555555433 3444444688999
Q ss_pred HhcCCHHHHHHHHHHHHhcCC----CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-----------ccc--H-h
Q 010320 378 AKEDCLEEMEKSINDAFEHKT----SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW-----------RLC--R-S 439 (513)
Q Consensus 378 ~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~--~-~ 439 (513)
...++.++|+.+++++..... .+.+......|..+|...+++++|..+++.+.+... .|+ - .
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 999999999999998876432 122343356788899999999999999999876321 122 1 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
.+..++..+...|+..+|++.++++.... +-|......+...+...|++.+|++.++.....
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 23445677888999999999999998765 668888889999999999999999999766544
No 25
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=2e-12 Score=124.50 Aligned_cols=283 Identities=8% Similarity=0.038 Sum_probs=161.3
Q ss_pred cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChhHHH
Q 010320 169 INNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN--TLISVFGRLLLVDHME 246 (513)
Q Consensus 169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~--~li~~~~~~g~~~~A~ 246 (513)
.|++++|.+.+....+........|-....+..+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 577777777776655432111222333334446777777777777777653 45543332 3355667777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHH
Q 010320 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT-------NTYLLLLRGYAHSGNLPRMEKIY 319 (513)
Q Consensus 247 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~ 319 (513)
..++++.+.... +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777777766532 5666777777777777777777777777776544221 12222222222222223333333
Q ss_pred HHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010320 320 ELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS 399 (513)
Q Consensus 320 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 399 (513)
+.+.+. .+.+..... .+...+...|+.++|.+++++..+...
T Consensus 253 ~~lp~~-~~~~~~~~~------------------------------------~~A~~l~~~g~~~~A~~~L~~~l~~~~- 294 (398)
T PRK10747 253 KNQSRK-TRHQVALQV------------------------------------AMAEHLIECDDHDTAQQIILDGLKRQY- 294 (398)
T ss_pred HhCCHH-HhCCHHHHH------------------------------------HHHHHHHHCCCHHHHHHHHHHHHhcCC-
Confidence 332211 112222222 355566666666666666666655322
Q ss_pred CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010320 400 VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479 (513)
Q Consensus 400 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 479 (513)
+... .++.+....++.+++.+..+...+... -|...+..+...+.+.+++++|.+.|+...+. .|+..+|..+
T Consensus 295 --~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~L 367 (398)
T PRK10747 295 --DERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWL 367 (398)
T ss_pred --CHHH--HHHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 2211 123344455677777777766654432 24555666667777777777777777777653 4677777777
Q ss_pred HHHHHhcCCHhHHHHHHHHHH
Q 010320 480 YYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~m~ 500 (513)
...+.+.|+.++|.+++++-.
T Consensus 368 a~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 368 ADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 777777777777777776554
No 26
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=7.5e-12 Score=121.15 Aligned_cols=131 Identities=8% Similarity=0.020 Sum_probs=90.6
Q ss_pred HHHHHHHh--cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH--HHHHHHH
Q 010320 159 YTKGIKFA--GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV--TYNTLIS 234 (513)
Q Consensus 159 ~~~ll~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~--~~~~li~ 234 (513)
+..+..+. ...|+++.|.+.+....+....+...+-....++...|+.+.|.+.|.+..+. .|+.. ..-....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHH
Confidence 34444443 35788888888887776654324444455566677778888888888887654 34442 3333467
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC
Q 010320 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 293 (513)
.+...|+++.|...++++.+.++. +..++..+...+.+.|++++|.+++..+.+.++.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 777788888888888888876532 5667778888888888888888888888877644
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=8.7e-15 Score=134.55 Aligned_cols=260 Identities=11% Similarity=0.065 Sum_probs=98.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010320 233 ISVFGRLLLVDHMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311 (513)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 311 (513)
...+.+.|++++|++++++.......| |...|..+...+...+++++|.+.++++...+-. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444555555555555554332222112 2233333333444455555555555555543322 33344444444 45555
Q ss_pred hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHH
Q 010320 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN 391 (513)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 391 (513)
+++|.++++...+.. ++...+..++..+...++++++.++++.+.........+..+..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555444332 233344455555555565555555555444333222222223346677778888899999998
Q ss_pred HHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 010320 392 DAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDC 471 (513)
Q Consensus 392 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 471 (513)
+.++. .|.+..+.+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|..+|++....+ +.
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 88884 45566678889999999999999888888877654 4466677888899999999999999999988765 55
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320 472 SKKTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 472 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
|......+..++...|+.++|.++.++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 88888899999999999999999887654
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.59 E-value=3.5e-10 Score=118.78 Aligned_cols=323 Identities=10% Similarity=-0.030 Sum_probs=232.1
Q ss_pred cCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCC---hhH
Q 010320 169 INNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK-EANISPSIVTYNTLISVFGRLLL---VDH 244 (513)
Q Consensus 169 ~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~g~~p~~~~~~~li~~~~~~g~---~~~ 244 (513)
.+...++.+.++.|-+....+......+.-...+.|+.++|..+|..... ...-.++....+-++..|.+.+. ..+
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred cCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 35556666666666665444555556666667788999999999998875 21122344455577777777765 222
Q ss_pred HHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHH
Q 010320 245 MEAA----------------------FQEIKDS-NL-SP--NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298 (513)
Q Consensus 245 A~~~----------------------~~~m~~~-g~-~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 298 (513)
+..+ .+..... +. .+ +...|..+..++.. |+.++|+..|.+.... .|+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 2222 1111111 11 23 56778888877776 8899999988887763 477655
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHH
Q 010320 299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA 378 (513)
Q Consensus 299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 378 (513)
...+...+...|++++|...|+++... +|+...+..+..++.+.|+.+.|...++...+........ ...+...+.
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l--~~~La~~l~ 587 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNAL--YWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHH--HHHHHHHHH
Confidence 555566667899999999999987664 3444456667788899999998888877666654222111 112233344
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHH
Q 010320 379 KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEME 458 (513)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 458 (513)
..|++++|...+++.++.. |. ...+..+...+.+.|+.++|...+++..+.... +...++.+...+...|++++|+
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~--P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIA--PS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 5599999999999998854 33 567888999999999999999999999876633 5677888888999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010320 459 SVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
..+++..+.. +-+...+..+..++...|++++|+..+++..+..
T Consensus 664 ~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 664 EMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999998865 4577889999999999999999999999987653
No 29
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=2e-11 Score=106.04 Aligned_cols=297 Identities=14% Similarity=0.108 Sum_probs=160.2
Q ss_pred CCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChhHHHH
Q 010320 170 NNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI--VTYNTLISVFGRLLLVDHMEA 247 (513)
Q Consensus 170 g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~ 247 (513)
++.++|.++|-+|.+....+..+.-+|.+.|-+.|..|+|+++...+..+.+..-+. ...-.|..-|...|-++.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 345555555555555433344445555555555555555555555555431111000 122233344444555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 010320 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327 (513)
Q Consensus 248 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 327 (513)
+|..+.+.|. --......|+..|-...+|++|+++-+++.+.|-++..+ -
T Consensus 129 ~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~----e------------------------- 178 (389)
T COG2956 129 IFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV----E------------------------- 178 (389)
T ss_pred HHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh----H-------------------------
Confidence 5555544322 123344444555555555555555555444433222100 0
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010320 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMR 407 (513)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 407 (513)
=...|..|...+....++++|...++..-+..++.+...+ ++.......|+++.|.+.++.+.+.+... -..+..
T Consensus 179 --IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi--~lG~v~~~~g~y~~AV~~~e~v~eQn~~y-l~evl~ 253 (389)
T COG2956 179 --IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASI--ILGRVELAKGDYQKAVEALERVLEQNPEY-LSEVLE 253 (389)
T ss_pred --HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhh--hhhHHHHhccchHHHHHHHHHHHHhChHH-HHHHHH
Confidence 0112333333333344444444433333333333333332 56777788888888888888888765443 345677
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 010320 408 CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT-- 485 (513)
Q Consensus 408 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-- 485 (513)
.|..+|.+.|+.++...++.++.+....++.. ..+-+.-....-.+.|..++.+-..+ +|+...+..++..-..
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~da 329 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAE--LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADA 329 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCccHH--HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccc
Confidence 88889999999999999999887665444432 33444444455566677666655543 6888888888877643
Q ss_pred -cCCHhHHHHHHHHHHHCCCC
Q 010320 486 -CGQRRKVNQVLGLMCKNGYD 505 (513)
Q Consensus 486 -~g~~~~A~~~~~~m~~~g~~ 505 (513)
.|.+.+.+.++++|...-++
T Consensus 330 eeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 330 EEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred cccchhhhHHHHHHHHHHHHh
Confidence 44567777778887655443
No 30
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=1.2e-11 Score=119.14 Aligned_cols=262 Identities=9% Similarity=0.025 Sum_probs=185.2
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHHccCHHH
Q 010320 203 NGLSDKCQSLFRDLKKEANISPSIV-TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN--YLIAGYMTAWMWGK 279 (513)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~ 279 (513)
.|++++|.+.+....+. .++.. .|.....+..+.|+++.|.+.|+++.+. .|+...+- .....+...|++++
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 69999999888876642 22333 3434455558999999999999999875 35543333 33568888999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH-HHHHhcCChhHHHHHHHHHH
Q 010320 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI-CAYSKCSVTDRIKKIEALMR 358 (513)
Q Consensus 280 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~~~ 358 (513)
|.+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.. ...+- .+|.
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~-~~~l~~~a~~---------------- 233 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH-RAMLEQQAWI---------------- 233 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHH----------------
Confidence 999999998855 2257888899999999999999999999999876543222 11110 1111
Q ss_pred hCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH
Q 010320 359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR 438 (513)
Q Consensus 359 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 438 (513)
.++.......+.+...++++...+. .+.+......+...+...|+.++|.+++++..+.. ++.
T Consensus 234 -------------~l~~~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~ 296 (398)
T PRK10747 234 -------------GLMDQAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDE 296 (398)
T ss_pred -------------HHHHHHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCH
Confidence 1111112223344444555444331 23456678889999999999999999999988744 344
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCC
Q 010320 439 SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVN 509 (513)
Q Consensus 439 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 509 (513)
.. .++.+....++.+++.+..+...++. +-|...+..+.+.|.+.|++++|.+.|++..+. .|+..
T Consensus 297 ~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~ 362 (398)
T PRK10747 297 RL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAY 362 (398)
T ss_pred HH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 22 23344456799999999999999765 556777889999999999999999999999876 35543
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=2.5e-14 Score=131.56 Aligned_cols=260 Identities=11% Similarity=0.053 Sum_probs=105.7
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhcc-CC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010320 161 KGIKFAGRINNVDLAADLFAEAANKH-LK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 238 (513)
.+...+.+.|++++|+++++...... .+ +...|..+...+...++.+.|++.++++... + +-+...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~-~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-D-KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-ccccccccccccc-cc
Confidence 55777889999999999997654444 33 7778888888888899999999999999864 2 2355667777777 78
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010320 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG-PVMPDTNTYLLLLRGYAHSGNLPRMEK 317 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~ 317 (513)
.+++++|.+++++..+.. ++...+..++..+.+.|+++++.++++++... ....+...|..+...+.+.|+.++|.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999998876543 56777888899999999999999999997753 245678888999999999999999999
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010320 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 397 (513)
++++..+.. +.+....+.++..+...|+.+++.++++.+.+..+.+...+. .+..+|...|+.++|..+|++....
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~--~la~~~~~lg~~~~Al~~~~~~~~~- 243 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD--ALAAAYLQLGRYEEALEYLEKALKL- 243 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH--HHHHHHHHHT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH--HHHHHhccccccccccccccccccc-
Confidence 999999873 346778888999999999888888887777666544444442 5788888888888888888887773
Q ss_pred CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010320 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430 (513)
Q Consensus 398 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 430 (513)
.|.++.+...+..++...|+.++|.++.++..
T Consensus 244 -~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 244 -NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -STT-HHHHHHHHHHHT----------------
T ss_pred -cccccccccccccccccccccccccccccccc
Confidence 34566677788888888888888888877653
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.58 E-value=6e-11 Score=124.46 Aligned_cols=350 Identities=10% Similarity=-0.010 Sum_probs=247.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhc-cC--CCHhHHHHHHHHHHHcCC---hHH
Q 010320 135 RLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK-HL--KTIGTYNALLGAYMYNGL---SDK 208 (513)
Q Consensus 135 ~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~--~~~~~~~~li~~~~~~g~---~~~ 208 (513)
.++.+....+.+.. +-+....-.+.-...+.|+.++|..+|+..... +- .+....+-|+..|.+.+. ..+
T Consensus 359 ~~~~~~~~~~y~~~----~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 359 AEALRLARLLYQQE----PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred hHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 34445555555541 236667777777778899999999999987763 21 145566677777777765 333
Q ss_pred HHHH----------------------HHHHHHhCCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 010320 209 CQSL----------------------FRDLKKEANI-SP--SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263 (513)
Q Consensus 209 A~~~----------------------~~~m~~~~g~-~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 263 (513)
+..+ ++......+. ++ +...|..+..++.. ++.++|...|.+..... |+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHH
Confidence 3222 2222222122 33 56778888877776 78888999888777653 66544
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Q 010320 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (513)
...+...+...|++++|...|+++... .|+...+..+..++.+.|++++|...++...+.. +.+...+..+...+..
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHh
Confidence 333444556899999999999998663 4555566777888899999999999999988764 3333444444444556
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHH
Q 010320 344 CSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLA 423 (513)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 423 (513)
.|+++.|...++...+..+. ... +..+...+.+.|++++|+..+++.+.. .|.+...++.+...+...|+.++|+
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~-~~a--~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPS-ANA--YVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCC-HHH--HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 69999888887766665553 322 335788899999999999999998884 4666778888989999999999999
Q ss_pred HHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 424 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
+.+++..+... -+...+..+..++...|++++|+..|++..+.. +-+..+.........+..+++.|.+-+++-..
T Consensus 664 ~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 664 EMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999887653 356778889999999999999999999998765 22335555666667777777777777665443
No 33
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.57 E-value=3.2e-11 Score=116.81 Aligned_cols=295 Identities=9% Similarity=0.033 Sum_probs=206.7
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH
Q 010320 201 MYNGLSDKCQSLFRDLKKEANISPSI-VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279 (513)
Q Consensus 201 ~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 279 (513)
...|+++.|.+.+.+..+. .|+. ..|-....+..+.|+.+.|.+.+++..+....++....-.....+...|++++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 4579999999999887753 4654 34455567788899999999999998765433333344445778888999999
Q ss_pred HHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHH---HhcCChhH-HHHHH
Q 010320 280 VEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAY---SKCSVTDR-IKKIE 354 (513)
Q Consensus 280 a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~-a~~~~ 354 (513)
|.+.++.+.+.+ | +......+...+...|++++|.+++..+.+.+..+.......-..++ ...+..+. .....
T Consensus 172 Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999865 4 57788899999999999999999999999986544332211111221 21111111 11222
Q ss_pred HHHHhCCCC-CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010320 355 ALMRLIPEK-EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433 (513)
Q Consensus 355 ~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 433 (513)
......+.. .-.+.....+...+...|+.++|.+++++..+.....................++.+.+.+.++...+..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 333333321 0112223368889999999999999999999854433322111112223344578888888888776543
Q ss_pred CcccH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320 434 WRLCR--SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 434 ~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
. -|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++-..
T Consensus 330 p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 D-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 233 556788889999999999999999655444579999999999999999999999999998643
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=4.4e-12 Score=114.74 Aligned_cols=187 Identities=9% Similarity=0.020 Sum_probs=143.1
Q ss_pred hcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHH
Q 010320 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME 387 (513)
Q Consensus 308 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 387 (513)
..|+++.|.+.+++....+-......||. --.+-+.|++++|.+.+-.+..+...+....+ .+...|-...+...|+
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~--qianiye~led~aqai 578 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLV--QIANIYELLEDPAQAI 578 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHhhCHHHHH
Confidence 35789999999998887654444444443 22466778888887777666655544443332 4677788888999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010320 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
+++.+... ..|+++.++..|...|-+.|+-..|.+.+-+--. -++.+..+...|...|....-+++|+.+|++..-
T Consensus 579 e~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaal- 654 (840)
T KOG2003|consen 579 ELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL- 654 (840)
T ss_pred HHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-
Confidence 99865544 7788999999999999999999999887665432 3456788899999999999999999999998653
Q ss_pred CCCCCHHHHHHHHHH-HHhcCCHhHHHHHHHHHHHC
Q 010320 468 KIDCSKKTFWIMYYA-YATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 468 ~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~ 502 (513)
++|+..-|..++.. +.+.|++++|.+++++..+.
T Consensus 655 -iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 655 -IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred -cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 68999999988755 45789999999999988764
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.6e-10 Score=105.25 Aligned_cols=335 Identities=13% Similarity=0.042 Sum_probs=223.2
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH-----------------------------HHHH
Q 010320 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG-----------------------------AYMY 202 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~-----------------------------~~~~ 202 (513)
...|...+-...-.+-+.|..+.|.+.|......-+..-..|-.|.. ++-.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 33455554455555667788888888887766532222222222221 2222
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHccCHH-H
Q 010320 203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS--PNVFTYNYLIAGYMTAWMWG-K 279 (513)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~-~ 279 (513)
..+.++++.-.+..... |+.-+...-+-...+.-...|+++|+.+|+++.+..+- -|..+|..++-.--...... -
T Consensus 240 l~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 23444444444444443 44333333233333344455666677777666654211 14455555543222111111 1
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010320 280 VEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359 (513)
Q Consensus 280 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 359 (513)
|..+++ . ... -..|+.++.+-|.-.++.+.|...|++..+.+ +.....|+.+.+-|....+...|.+.++...+
T Consensus 319 A~~v~~-i--dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 319 AQNVSN-I--DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHH-h--ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 111111 0 112 23466677777778888999999999999874 34677899999999999999999999999999
Q ss_pred CCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh
Q 010320 360 IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439 (513)
Q Consensus 360 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 439 (513)
+.+.+...| | -+..+|.-.+...=|+-.|++... ..|.|..+|.+|..+|.+.++.++|++-|++....|-. +..
T Consensus 393 i~p~DyRAW-Y-GLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~ 467 (559)
T KOG1155|consen 393 INPRDYRAW-Y-GLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGS 467 (559)
T ss_pred cCchhHHHH-h-hhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chH
Confidence 999999999 5 499999999999999999999887 66889999999999999999999999999999877733 667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010320 440 LYHSKMVMYASQRRVEEMESVLKEMEN----YKIDCS--KKTFWIMYYAYATCGQRRKVNQVLGL 498 (513)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (513)
.+..|.+.|-+.++.++|...|+...+ .|..-+ .....-|..-+.+.+++++|..+...
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 899999999999999999999887665 243222 22222355667788888887665443
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=8.8e-12 Score=118.44 Aligned_cols=287 Identities=13% Similarity=0.042 Sum_probs=216.1
Q ss_pred ChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHccCHHHHH
Q 010320 205 LSDKCQSLFRDLKKEANISPSI-VTYNTLISVFGRLLLVDHMEAAFQEIKDSNL--SPNVFTYNYLIAGYMTAWMWGKVE 281 (513)
Q Consensus 205 ~~~~A~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~ 281 (513)
+..+|+..|..+... .+|. ....-+..+|...+++++|+++|+.+.+... .-+..+|.+.+--+-+. -++
T Consensus 334 ~~~~A~~~~~klp~h---~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~L 406 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH---HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VAL 406 (638)
T ss_pred HHHHHHHHHHhhHHh---cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHH
Confidence 467888888886643 3444 4556677889999999999999999886431 12677888887655332 222
Q ss_pred HHH-HHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010320 282 EIY-QMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI 360 (513)
Q Consensus 282 ~~~-~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 360 (513)
..+ +++.... +-...+|.++.++|.-.++.+.|++.|++.++.+ +....+|+.+..-+.....+|+|...++....+
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 222 2222211 2357899999999999999999999999988853 236778888887888888888888888888888
Q ss_pred CCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhh
Q 010320 361 PEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL 440 (513)
Q Consensus 361 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 440 (513)
..+++..| |. +...|.+.++++.|+-.|++.++ ..|.+..+...+...+.+.|+.|+|+++++++.....+ |+-.
T Consensus 485 ~~rhYnAw-YG-lG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~ 559 (638)
T KOG1126|consen 485 DPRHYNAW-YG-LGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC 559 (638)
T ss_pred CchhhHHH-Hh-hhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence 88888888 53 88899999999999999998887 55666667777888889999999999999998766544 2222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 010320 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDV 506 (513)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 506 (513)
--.-+..+...+++++|+..++++++.- +-+...|..+.+.|-+.|+.+.|+.-|--|.+..-++
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 2234556777899999999999999752 4456778888999999999999988887776654443
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=1.1e-12 Score=127.76 Aligned_cols=264 Identities=16% Similarity=0.136 Sum_probs=165.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010320 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291 (513)
Q Consensus 212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 291 (513)
++-.+... |+.||.+||..+|.-||..|+.+.|- +|.-|.-.....+...|+.++.+..++++.+.+.
T Consensus 12 fla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45556654 88888888888888888888888888 8888877767677788888888888887776665
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHH
Q 010320 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV 371 (513)
Q Consensus 292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 371 (513)
.|...||+.|+.+|...||+.. |+...+ -.-.++..+...|.-......+. .--..++..+...
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~--k~~c~p~~lpda~- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLM--KIHCCPHSLPDAE- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHh--hcccCcccchhHH-
Confidence 5778888888888888888655 332222 01123333444443222112111 1123344444422
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010320 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (513)
..+.-....|.++.+++++..+-......| +..+++-+.... ....+++...+...-.|+..+|.++++.-...
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~~p----~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaa 217 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWNAP----FQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAA 217 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcccccch----HHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhc
Confidence 245555566667777766644332211111 111233332222 22233333333222257778888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCCC
Q 010320 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFP 512 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 512 (513)
|+++.|..++.+|+++|++.+.+-|..|+-+ .++...+..+++-|.+.|+.|+.+|+.
T Consensus 218 g~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 218 GDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred CchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhH
Confidence 8888888888888888888787777777766 677777788888888888888887763
No 38
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=1.4e-09 Score=97.60 Aligned_cols=292 Identities=11% Similarity=0.051 Sum_probs=182.4
Q ss_pred ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010320 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247 (513)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 247 (513)
-.|+|.+|+++..+-.+.+......|-.-..+--..|+.+.+-.++.+..+.. -.++...+-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA-GDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHhCCCchhHHH
Confidence 35788888888877666655455666666677777788888888888777541 13455566666777777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHH
Q 010320 248 AFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT-------NTYLLLLRGYAHSGNLPRMEKIYE 320 (513)
Q Consensus 248 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~ 320 (513)
-++++.+.+. .+..+......+|.+.|++.++..+...|.+.|+--|. .+|..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 8877777654 36677777888888888888888888888877765443 233333333322222222222222
Q ss_pred HHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010320 321 LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSV 400 (513)
Q Consensus 321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 400 (513)
...+. ...+... ...++.-+.+.|+.++|.++.++..++...+
T Consensus 254 ~~pr~-lr~~p~l------------------------------------~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~ 296 (400)
T COG3071 254 NQPRK-LRNDPEL------------------------------------VVAYAERLIRLGDHDEAQEIIEDALKRQWDP 296 (400)
T ss_pred hccHH-hhcChhH------------------------------------HHHHHHHHHHcCChHHHHHHHHHHHHhccCh
Confidence 22111 0111111 2245666667777777777777777665444
Q ss_pred chHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010320 401 TTVRIMRCIVSSYFRCNAVDKLANFVKRAE-SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479 (513)
Q Consensus 401 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 479 (513)
. . ...-.+.+.++.+.-++..+.-. ..+-.| ..+.+|...|.+.+.|.+|...|+...+ ..|+..+|+.+
T Consensus 297 ~----L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~l 367 (400)
T COG3071 297 R----L-CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAEL 367 (400)
T ss_pred h----H-HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHH
Confidence 3 1 12234556666666666555443 333333 5667777777788888888888876554 35777788888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 010320 480 YYAYATCGQRRKVNQVLGLMCKNGYDVP 507 (513)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~m~~~g~~p~ 507 (513)
.+++.+.|+..+|.+++++-...-..|+
T Consensus 368 a~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 368 ADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 8888888888888777777654444443
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.50 E-value=4.5e-10 Score=110.48 Aligned_cols=330 Identities=12% Similarity=0.017 Sum_probs=233.4
Q ss_pred cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010320 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246 (513)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 246 (513)
...|++++|.+++.++.+..+.+...|.+|...|-..|+.+++...+-..-. -.+-|..-|..+.....+.|++++|.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHH
Confidence 3449999999999999988877888999999999999999999887766553 23556788888888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010320 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD----TNTYLLLLRGYAHSGNLPRMEKIYELV 322 (513)
Q Consensus 247 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~ 322 (513)
-.|.+.++... ++...+---+..|-+.|+...|.+-|.+|.+..-..| ......+++.+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999988754 3555555566778889999999999999887431112 223344566677777778888888776
Q ss_pred Hh-ccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCC-----------------------CcccchHH-HHHHH
Q 010320 323 KH-HVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI-PEK-----------------------EYRPWLNV-LLIRV 376 (513)
Q Consensus 323 ~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~-----------------------~~~~~~~~-~li~~ 376 (513)
.. .+-..+...++.++..|.+...++.+.......... .++ +....+-. -+.-+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 55 223335556777888888877777665554333320 001 11111111 12222
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHH
Q 010320 377 YAKEDCLEEMEKSINDAFEHKT-SVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVE 455 (513)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 455 (513)
+......+...-+......... ...+...|.-+..+|...|++.+|+.++..+.....--+...|--+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 3333333333333333333322 233567888999999999999999999999986655556778889999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320 456 EMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 456 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
+|.+.|+...... +-+...--.|-..+.+.|+.++|.+.++.|.
T Consensus 467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999998754 3344555577788999999999999999876
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=4.8e-11 Score=113.56 Aligned_cols=285 Identities=10% Similarity=-0.014 Sum_probs=151.9
Q ss_pred CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCh-hHHHHH
Q 010320 171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI-SPSIVTYNTLISVFGRLLLV-DHMEAA 248 (513)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~-~~A~~~ 248 (513)
+..+|...|+.++..-..+..+...+..+|...+++++|.++|+.+++.... .-+...|.+.+--+-+.=.+ -.|..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4456666666644443334455555666666666666666666666543111 11345565555433221111 012222
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 010320 249 FQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327 (513)
Q Consensus 249 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 327 (513)
.+.++ -...+|.++.++|.-.++.+.|++.|++..+ +.| ..++|+.+..-+....++|.|...|........
T Consensus 414 i~~~~-----~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 414 IDTDP-----NSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HhhCC-----CCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 22222 2445666666666666666666666666665 334 466666666666666666666666665554311
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010320 328 GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMR 407 (513)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 407 (513)
.+-..|--+.-.|.+.++++.|+--++...++.+.+.+... .+...+-+.|+.|+|++++++...-....+-.. |
T Consensus 487 -rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~--~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~-~- 561 (638)
T KOG1126|consen 487 -RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILC--HIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK-Y- 561 (638)
T ss_pred -hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHh--hhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH-H-
Confidence 12223333444566666666665555555555544443332 244555566666777777666665332222111 2
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 010320 408 CIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYK 468 (513)
Q Consensus 408 ~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 468 (513)
-.+..+...+++++|+..++++++.-.+ +...|..+...|-+.|+.+.|+.-|--+.+.+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 2344455566677777777766654322 33445556666666777777766666665544
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=2.1e-10 Score=99.83 Aligned_cols=291 Identities=14% Similarity=0.097 Sum_probs=193.3
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC-C---CHhHHHHHHHHHHHcC
Q 010320 129 QLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-K---TIGTYNALLGAYMYNG 204 (513)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~---~~~~~~~li~~~~~~g 204 (513)
-+...+++|.+.|-.|.+.. +-+.++--+|.+.|-+.|.+|.|+.+.+.+.++.- + -....-.|..-|...|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d----~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aG 121 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED----PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAG 121 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC----chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhh
Confidence 34789999999999987732 23555666888999999999999999999887522 2 1345566778899999
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHccCHHHH
Q 010320 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV----FTYNYLIAGYMTAWMWGKV 280 (513)
Q Consensus 205 ~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a 280 (513)
-+|.|..+|..+... | .--......|+..|-...+|++|+++-+++.+.|-.+.. .-|.-|...+....+.+.|
T Consensus 122 l~DRAE~~f~~L~de-~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 122 LLDRAEDIFNQLVDE-G-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhHHHHHHHHHhcc-h-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 999999999999864 2 233457788999999999999999999999887654432 2345555555567788899
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010320 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI 360 (513)
Q Consensus 281 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 360 (513)
..++.+..+.+- -.+..-..+.+.....|+++.|.+.++.+.+.+..--..+...
T Consensus 200 ~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~------------------------ 254 (389)
T COG2956 200 RELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM------------------------ 254 (389)
T ss_pred HHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH------------------------
Confidence 999988887542 2344555677788889999999999998888754322333334
Q ss_pred CCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhh
Q 010320 361 PEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL 440 (513)
Q Consensus 361 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 440 (513)
|..+|...|+.++....+.++.+....+.- -..+-..-....-.+.|..++.+-.. -+|+...
T Consensus 255 ------------L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~---~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~g 317 (389)
T COG2956 255 ------------LYECYAQLGKPAEGLNFLRRAMETNTGADA---ELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRG 317 (389)
T ss_pred ------------HHHHHHHhCCHHHHHHHHHHHHHccCCccH---HHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHH
Confidence 445555555555555555555543322221 12222222223334444444443332 2466666
Q ss_pred HHHHHHHHH---hcCCHHHHHHHHHHHHhC
Q 010320 441 YHSKMVMYA---SQRRVEEMESVLKEMENY 467 (513)
Q Consensus 441 ~~~li~~~~---~~g~~~~A~~~~~~m~~~ 467 (513)
+..+|+.-. ..|...+-..+++.|...
T Consensus 318 f~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 318 FHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 777766554 344556666666666654
No 42
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.47 E-value=1e-09 Score=108.78 Aligned_cols=337 Identities=9% Similarity=-0.025 Sum_probs=179.1
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC----ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320 162 GIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG----LSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
|...+.+.|+++.+...|+.+.+..+.+..+...|...|+..+ ..++|..++.+..+. .+.|...|-.+...+-
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLE 425 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHH
Confidence 3444445555555555555554443334444444444444443 233344444333322 1233334443333333
Q ss_pred hcCChhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC---CCCCCH------HHHHHHHH
Q 010320 238 RLLLVDHMEAAFQEI----KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG---PVMPDT------NTYLLLLR 304 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~------~t~~~ll~ 304 (513)
... ...++.+|... ...+-.+-....|.+...+...|++++|...|+..... ...+|. .+--.+..
T Consensus 426 ~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 426 QTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred hcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 222 22223333322 23333355666677777777777788777777776543 111222 22223344
Q ss_pred HHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc------------------
Q 010320 305 GYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR------------------ 366 (513)
Q Consensus 305 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------------------ 366 (513)
.+-..++.+.|.+.|..+.+.. +.-+..|-.+..+....+....+...++..-.....+..
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 4445556666666666665531 111112222221111112222222211111111111111
Q ss_pred --------------cchHH--HHHHHHHh------------cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc
Q 010320 367 --------------PWLNV--LLIRVYAK------------EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA 418 (513)
Q Consensus 367 --------------~~~~~--~li~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 418 (513)
+.+|+ .|.+.|.. .+..++|+++|.+++. ..|.+...-|.+.-.++..|+
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccC
Confidence 12222 23333322 1356778888888777 445556566777778888889
Q ss_pred HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 010320 419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY-KIDCSKKTFWIMYYAYATCGQRRKVNQVLG 497 (513)
Q Consensus 419 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 497 (513)
+..|..+|....+.... +..+|-.+.++|..+|++-.|+++|+...++ .-.-+......|.+++.+.|.+.+|.+.+.
T Consensus 662 ~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred chHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999888776542 4456777888888999999999999876543 445567788888899999999999888877
Q ss_pred HHHHCCCC
Q 010320 498 LMCKNGYD 505 (513)
Q Consensus 498 ~m~~~g~~ 505 (513)
..+.....
T Consensus 741 ~a~~~~p~ 748 (1018)
T KOG2002|consen 741 KARHLAPS 748 (1018)
T ss_pred HHHHhCCc
Confidence 76655433
No 43
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.47 E-value=1.8e-09 Score=106.30 Aligned_cols=361 Identities=8% Similarity=0.002 Sum_probs=253.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHH
Q 010320 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS 211 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 211 (513)
++.+.|.+++..+.++ .+.....|-.|..+|-..|+.+++...+-..--..+.|...|-.+.....+.|+++.|.-
T Consensus 153 g~~eeA~~i~~EvIkq----dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQ----DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred CCHHHHHHHHHHHHHh----CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 6888899999988876 356888999999999999999999888877666666688999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHccCHHHHHHHHHHH
Q 010320 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY----NYLIAGYMTAWMWGKVEEIYQMM 287 (513)
Q Consensus 212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m 287 (513)
.|.+..+. -+++...+---+..|-+.|+...|.+-|.++.......|..-+ -.++..+...++-+.|.+.++..
T Consensus 229 cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 229 CYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999874 3556666666778888999999999999999876442232222 33455666777778888888877
Q ss_pred HcC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---------------------------cCCCcHHHHHHHHH
Q 010320 288 KAG-PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH---------------------------VDGKEFPLIRAMIC 339 (513)
Q Consensus 288 ~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---------------------------~~~~~~~~~~~li~ 339 (513)
... +-.-+...++.++..+.+...++.|......+... +..++..++. ++-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-LMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-Hhh
Confidence 652 22335567778888888888888888777666551 1223333312 222
Q ss_pred HHHhcCChhHHHHHHHHHHhCC-CCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCc
Q 010320 340 AYSKCSVTDRIKKIEALMRLIP-EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNA 418 (513)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 418 (513)
++......+..+.....+.+-. ........+.-+..+|...|++.+|+.+|..+....... +..+|-.+..+|...|.
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-NAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-chhhhHHHHHHHHHHhh
Confidence 2333332222222222221111 111222224458889999999999999999887754433 36678889999999999
Q ss_pred HHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHh
Q 010320 419 VDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY--------KIDCSKKTFWIMYYAYATCGQRR 490 (513)
Q Consensus 419 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p~~~~~~~li~~~~~~g~~~ 490 (513)
++.|.+.++........ +...--.|-..+-+.|+.++|.++++.+... +..|+...-......+.+.|+.+
T Consensus 465 ~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 99999999988754421 3344456667788999999999999986532 35566666666777888889888
Q ss_pred HHHHHHHHHHH
Q 010320 491 KVNQVLGLMCK 501 (513)
Q Consensus 491 ~A~~~~~~m~~ 501 (513)
+-+.+-..|..
T Consensus 544 ~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 544 EFINTASTLVD 554 (895)
T ss_pred HHHHHHHHHHH
Confidence 76666555544
No 44
>PF13041 PPR_2: PPR repeat family
Probab=99.46 E-value=1.6e-13 Score=88.72 Aligned_cols=49 Identities=37% Similarity=0.667 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 010320 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307 (513)
Q Consensus 259 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 307 (513)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 45
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.46 E-value=1.5e-09 Score=97.55 Aligned_cols=269 Identities=9% Similarity=0.003 Sum_probs=195.4
Q ss_pred HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHH
Q 010320 202 YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVE 281 (513)
Q Consensus 202 ~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 281 (513)
..|++.+|.++..+-.+. +- -....|..-..+-...|+.+.+..++.+.-+..-.++...+-+........|+++.|.
T Consensus 96 ~eG~~~qAEkl~~rnae~-~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEH-GE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhhhc-Cc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 369999999999987754 43 3345677777888899999999999999988644567778888888899999999999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 010320 282 EIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIP 361 (513)
Q Consensus 282 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 361 (513)
.-++++.+.+- -+........++|.+.|++.....++..+.+.+.-.+...-.-=. +++
T Consensus 174 ~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~-------------~a~------- 232 (400)
T COG3071 174 ENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ-------------QAW------- 232 (400)
T ss_pred HHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH-------------HHH-------
Confidence 99999888652 357788899999999999999999999999988765544211000 000
Q ss_pred CCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhH
Q 010320 362 EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLY 441 (513)
Q Consensus 362 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 441 (513)
..++.-....+..+.-...+++.-.+- ..++.+-.+++.-+.+.|+.++|.+++++..+.+..|+...
T Consensus 233 ---------~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~- 300 (400)
T COG3071 233 ---------EGLLQQARDDNGSEGLKTWWKNQPRKL--RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR- 300 (400)
T ss_pred ---------HHHHHHHhccccchHHHHHHHhccHHh--hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH-
Confidence 012222222233333334444433321 12344566788889999999999999999999998877322
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCC
Q 010320 442 HSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511 (513)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 511 (513)
.-.+.+-++.+.-++..++-.... +-++..+.+|..-|.+++.|.+|.+.|+...+ ..|+.++|
T Consensus 301 ---~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~ 364 (400)
T COG3071 301 ---LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDY 364 (400)
T ss_pred ---HHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhH
Confidence 234567788888888877766442 34557889999999999999999999996654 45666655
No 46
>PF13041 PPR_2: PPR repeat family
Probab=99.45 E-value=2.4e-13 Score=87.90 Aligned_cols=50 Identities=38% Similarity=0.644 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010320 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273 (513)
Q Consensus 224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 273 (513)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 66677777777777777777777777777777777777777777776653
No 47
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.45 E-value=1.3e-09 Score=108.06 Aligned_cols=339 Identities=10% Similarity=0.020 Sum_probs=197.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccC----CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChH
Q 010320 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN----NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSD 207 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~ 207 (513)
+..+.+...|+.+.+. .+-+..+...|...|+..+ ..++|..++....+..+.|...|-.+...+-...-+.
T Consensus 356 ~dle~s~~~fEkv~k~----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~ 431 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQ----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA 431 (1018)
T ss_pred chHHHHHHHHHHHHHh----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH
Confidence 3445566666666553 2334555555555555553 4566677776666655556677766666665543333
Q ss_pred HHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCH-------HHHHHHHHHHHH
Q 010320 208 KCQSLFRDL----KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS---NLSPNV-------FTYNYLIAGYMT 273 (513)
Q Consensus 208 ~A~~~~~~m----~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-------~~~~~li~~~~~ 273 (513)
++..|... ... +-.+-....|.+...+...|+++.|...|+..+.. ...+|. .-|| +...+-.
T Consensus 432 -sL~~~~~A~d~L~~~-~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~ 508 (1018)
T KOG2002|consen 432 -SLDAYGNALDILESK-GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEE 508 (1018)
T ss_pred -HHHHHHHHHHHHHHc-CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHh
Confidence 35555432 222 33466667777777777777777777777766543 111222 1222 2223333
Q ss_pred ccCHHHHHHHHHHHHcCC---------------------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010320 274 AWMWGKVEEIYQMMKAGP---------------------------------VMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320 (513)
Q Consensus 274 ~g~~~~a~~~~~~m~~~g---------------------------------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 320 (513)
.++.+.|.+.|..+.+.. ..-+...++.+...+.+..++.-|.+-|.
T Consensus 509 l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~ 588 (1018)
T KOG2002|consen 509 LHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFE 588 (1018)
T ss_pred hhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHH
Confidence 445555555555554421 01122233333334444444444444333
Q ss_pred HHHhc-cCCCcHHHHHHHHHHHHhc------------CChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHH
Q 010320 321 LVKHH-VDGKEFPLIRAMICAYSKC------------SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME 387 (513)
Q Consensus 321 ~~~~~-~~~~~~~~~~~li~~~~~~------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 387 (513)
.+.+. ...+|..+.-+|.+.|... +..++|.+.+....+..+++.-.- + -+.-.++..|++.+|.
T Consensus 589 ~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA-N-GIgiVLA~kg~~~~A~ 666 (1018)
T KOG2002|consen 589 TILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA-N-GIGIVLAEKGRFSEAR 666 (1018)
T ss_pred HHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc-c-chhhhhhhccCchHHH
Confidence 33221 1124555555555544321 222333333333333333333322 3 3677788999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE-SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
.+|.++.+..... ..+|-.+.++|...|++..|+++|+... +....-+....+.|..++.+.|++.+|.+.+.....
T Consensus 667 dIFsqVrEa~~~~--~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 667 DIFSQVREATSDF--EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHhhC--CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999865533 3358889999999999999999999764 455556778889999999999999999999988887
Q ss_pred CCCCCCHHHHHHHHH
Q 010320 467 YKIDCSKKTFWIMYY 481 (513)
Q Consensus 467 ~~~~p~~~~~~~li~ 481 (513)
....-...-||..+-
T Consensus 745 ~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 745 LAPSNTSVKFNLALV 759 (1018)
T ss_pred hCCccchHHhHHHHH
Confidence 654444555665443
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.41 E-value=9.8e-09 Score=97.65 Aligned_cols=327 Identities=8% Similarity=-0.001 Sum_probs=225.2
Q ss_pred HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010320 164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243 (513)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 243 (513)
..|.+.+.++-|..+|....+-.+.+...|......--..|..+.-..+|++.... ++-....|-...+-+-..|++.
T Consensus 524 ~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~ 601 (913)
T KOG0495|consen 524 QSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVP 601 (913)
T ss_pred HHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcH
Confidence 33445555555555555555443334555555555555556666666666666643 3444445555556667778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010320 244 HMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 244 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
.|..++.+..+.... +...|-.-+..-....+++.|..+|.+... ..|+...|.--+..---.++.++|.+++++..
T Consensus 602 ~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~l 678 (913)
T KOG0495|consen 602 AARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEAL 678 (913)
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHH
Confidence 888888888876543 677788888888888888999988888776 34677777666666666788899999998887
Q ss_pred hccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010320 324 HHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTV 403 (513)
Q Consensus 324 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 403 (513)
+. ++.-...|-.+...+-+.++++.|.+++..-.+..+..+.-|. .+...=-+.|++-.|..+++....++ |.+.
T Consensus 679 k~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWl--lLakleEk~~~~~rAR~ildrarlkN--Pk~~ 753 (913)
T KOG0495|consen 679 KS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWL--LLAKLEEKDGQLVRARSILDRARLKN--PKNA 753 (913)
T ss_pred Hh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHH--HHHHHHHHhcchhhHHHHHHHHHhcC--CCcc
Confidence 76 3334456777777888888888888777665555566666664 45555566778889999998877754 4456
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-----------------------------CcccHhhHHHHHHHHHhcCCH
Q 010320 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAG-----------------------------WRLCRSLYHSKMVMYASQRRV 454 (513)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----------------------------~~p~~~~~~~li~~~~~~g~~ 454 (513)
..|-..|+.=.+.|+.+.|..+..+..+.- +.-|....-.+...|-...++
T Consensus 754 ~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~ 833 (913)
T KOG0495|consen 754 LLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKI 833 (913)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence 678888888889999998888777654321 112333344445556667778
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320 455 EEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 455 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
+.|.+.|++....+ +-+..+|..+...+.++|.-+.-.+++++...
T Consensus 834 ~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 834 EKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 88888888888766 44567788888888888888887888777654
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.5e-09 Score=95.98 Aligned_cols=301 Identities=11% Similarity=0.019 Sum_probs=212.7
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH-----------------------------HHHHHHHhc
Q 010320 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN-----------------------------TLISVFGRL 239 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~-----------------------------~li~~~~~~ 239 (513)
|...+-.....+-+.|...+|+..|...... .+-.-..|- .+..++...
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 5444444445566677778787777666532 122222221 122344444
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC-C-CCHHHHHHHHHHHHhcCChHHHHH
Q 010320 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV-M-PDTNTYLLLLRGYAHSGNLPRMEK 317 (513)
Q Consensus 240 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~-p~~~t~~~ll~~~~~~g~~~~a~~ 317 (513)
.+.+++..-.+.....|+.-+...-+....+.-...++|+|+.+|+++.++.- + -|..+|+.++-.-....+ +.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk----Ls 316 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK----LS 316 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH----HH
Confidence 56667777777777777654444444444445556788888888888877531 1 156777777644332222 22
Q ss_pred HHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010320 318 IYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397 (513)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 397 (513)
++.+-.-.-..--..|+..+.+-|+-.++.++|...++..-++.++-...|+ .|..-|....+...|++-++..++
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWT--LmGHEyvEmKNt~AAi~sYRrAvd-- 392 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWT--LMGHEYVEMKNTHAAIESYRRAVD-- 392 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHH--HhhHHHHHhcccHHHHHHHHHHHh--
Confidence 2222111101112345566667777778778888888877788888888886 788999999999999999999888
Q ss_pred CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 010320 398 TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW 477 (513)
Q Consensus 398 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 477 (513)
..|.|...|-.|.++|.-.+...=|+-+|++..+.. +-|...|.+|.++|.+.++.++|++.|......| ..+...+.
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~ 470 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALV 470 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHH
Confidence 678889999999999999999999999999988655 3478999999999999999999999999998877 44678899
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHH
Q 010320 478 IMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 478 ~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
.|.+.|-+.++.++|...|++-.+
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999998887654
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=8.5e-11 Score=114.90 Aligned_cols=263 Identities=10% Similarity=0.077 Sum_probs=127.3
Q ss_pred CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHH
Q 010320 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228 (513)
Q Consensus 150 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~ 228 (513)
.|+.|+..+|..+|.-|+..|+++.|- +|.-|.-+..| +...++.++.+...+++.+.+. .|...|
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDt 85 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLADT 85 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCchhH
Confidence 456677777777777777777776666 66666666555 5666666666666666665554 456666
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHHH
Q 010320 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK-AGPVMPDTNTYLLLLRGYA 307 (513)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~t~~~ll~~~~ 307 (513)
|..|+.+|...||+.. |++..+ -.-.+...+...|-......++..+. ..+.-||..+ ++.-..
T Consensus 86 yt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv 150 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLV 150 (1088)
T ss_pred HHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHH
Confidence 7777777777766655 222221 01112333444444444444443321 1233344432 222233
Q ss_pred hcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHH
Q 010320 308 HSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEME 387 (513)
Q Consensus 308 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 387 (513)
-.|-++.+.+++..+........... +++-.... ....++.....+...+ ...+.++..++.+-..+|+.+.|.
T Consensus 151 ~eglwaqllkll~~~Pvsa~~~p~~v---fLrqnv~~--ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWNAPFQV---FLRQNVVD--NTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHhhCCcccccchHHH---HHHHhccC--CchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHH
Confidence 34445555555544322111000000 12221111 1122233333333333 333333344555555555666666
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010320 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 450 (513)
.++.+|.++|....... |-.++-+ .++...+..+++.|.+.|+.|+..|+...+..+..
T Consensus 225 ~ll~emke~gfpir~Hy-FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHY-FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHHHHcCCCccccc-chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 66666655555443322 2223222 55555555555555555666665555555444444
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=1.1e-09 Score=97.79 Aligned_cols=199 Identities=12% Similarity=-0.016 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
....+..+...+...|++++|.+.+++..+..+.+...+..+...+...|++++|.+.|++..+. .+.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 45677778888888899999999998887766557788888888888889999999999888764 2445667778888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH
Q 010320 235 VFGRLLLVDHMEAAFQEIKDSNLS-PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 313 (513)
.+...|++++|.+.|++....... .....+..+...+...|++++|.+.+++..+.. ..+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 888888999999988888764322 234566667778888888888888888877643 224567778888888888888
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010320 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357 (513)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 357 (513)
+|...+++..+. .+.+...+..+...+...|+.+.+....+.+
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 888888887776 3345555556666666667666665554433
No 52
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.35 E-value=3.2e-09 Score=103.40 Aligned_cols=132 Identities=17% Similarity=0.118 Sum_probs=106.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH
Q 010320 367 PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446 (513)
Q Consensus 367 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 446 (513)
.|++..+...|...|++++|++.+++.++. .|+.+..|..-...+-+.|++++|.+.++........ |...-+-.+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aK 270 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHH
Confidence 355556778888999999999999999984 4666778888899999999999999999999877754 6777777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320 447 MYASQRRVEEMESVLKEMENYKIDCSKK------TF--WIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~--~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
.+.++|++++|.+++....+.+..|-.. .| .....+|.+.|++..|++-|..+.+
T Consensus 271 y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 271 YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8899999999999999998877544322 22 2345789999999999988776543
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=1.5e-09 Score=97.09 Aligned_cols=202 Identities=12% Similarity=0.094 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHH
Q 010320 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA 340 (513)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (513)
...+..+...+...|++++|.+.+++..+.. ..+...+..+...+...|++++|.+.+++..+... .+...+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~----- 103 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLN----- 103 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHH-----
Confidence 4555666666666666666666666665532 12345555666666666666666666666555321 1222222
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHH
Q 010320 341 YSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVD 420 (513)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 420 (513)
.+...+...|++++|.+.+++.......+.....+..+...+...|+++
T Consensus 104 -------------------------------~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 152 (234)
T TIGR02521 104 -------------------------------NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFD 152 (234)
T ss_pred -------------------------------HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHH
Confidence 2455556667777777777776654333333445666777788888888
Q ss_pred HHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 421 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
+|.+.+.+..+.... +...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 153 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 153 KAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888888887765422 4556777788888888888888888888766 24566777778888888888888888887775
Q ss_pred HC
Q 010320 501 KN 502 (513)
Q Consensus 501 ~~ 502 (513)
+.
T Consensus 231 ~~ 232 (234)
T TIGR02521 231 KL 232 (234)
T ss_pred hh
Confidence 43
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.9e-08 Score=92.53 Aligned_cols=356 Identities=9% Similarity=-0.045 Sum_probs=234.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320 132 SRPRLALEVLNWRRRQAGYGTPMT-KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
+.++.|...+.|... ..|| +.-|...-.+|...|+|+++.+.-....+.++.-+..+..-..++-..|++++|+
T Consensus 129 kkY~eAIkyY~~AI~-----l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal 203 (606)
T KOG0547|consen 129 KKYDEAIKYYTQAIE-----LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEAL 203 (606)
T ss_pred ccHHHHHHHHHHHHh-----cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHH
Confidence 578899999999987 4567 7778888899999999999998888777765544555555555666666666554
Q ss_pred HH----------------------HHH---------HHH-hCCCCCCHHHHHHHHHHHHhc--------C----------
Q 010320 211 SL----------------------FRD---------LKK-EANISPSIVTYNTLISVFGRL--------L---------- 240 (513)
Q Consensus 211 ~~----------------------~~~---------m~~-~~g~~p~~~~~~~li~~~~~~--------g---------- 240 (513)
.= +++ |.+ +.-+-|+....++....+... +
T Consensus 204 ~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~ 283 (606)
T KOG0547|consen 204 FDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEA 283 (606)
T ss_pred HhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHH
Confidence 31 111 110 011234444333333333110 0
Q ss_pred ----------ChhHHHHHHHHHHH-CCCCC--C---------HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHH
Q 010320 241 ----------LVDHMEAAFQEIKD-SNLSP--N---------VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT 298 (513)
Q Consensus 241 ----------~~~~A~~~~~~m~~-~g~~p--~---------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 298 (513)
.+..|...+.+-.. ....+ + ..+.+.....+.-.|+.-.|.+-|+..+...-.++ ..
T Consensus 284 l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~l 362 (606)
T KOG0547|consen 284 LEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SL 362 (606)
T ss_pred HHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hH
Confidence 11222222211110 00011 1 11122222233446888899999999887543322 23
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHH
Q 010320 299 YLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYA 378 (513)
Q Consensus 299 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 378 (513)
|.-+..+|....+.++.++.|.+..+.+. .+..+|..=...+.-.++++.|..-++....+.+.+..+++ -+..+.-
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i--Ql~~a~Y 439 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI--QLCCALY 439 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH--HHHHHHH
Confidence 77888889999999999999999888643 35556665566666666777777667766777777776654 4566666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-----ccHhhH--HHHHHHHHhc
Q 010320 379 KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR-----LCRSLY--HSKMVMYASQ 451 (513)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~~~--~~li~~~~~~ 451 (513)
+.++++++...|++..++ -|..+.+|+.....+...+++++|.+.|+..++.... .+...+ -.++.. -=.
T Consensus 440 r~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk 516 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWK 516 (606)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chh
Confidence 788999999999999885 3555677999999999999999999999988654322 122111 112111 124
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
+++..|.+++++..+.+ +-....|..|...-.+.|+.++|+++|++-.
T Consensus 517 ~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 89999999999999887 4456689999999999999999999998753
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=1.9e-09 Score=108.54 Aligned_cols=115 Identities=11% Similarity=-0.058 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhccCCCHhHHHHHHHHHHH---------cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 010320 172 VDLAADLFAEAANKHLKTIGTYNALLGAYMY---------NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV 242 (513)
Q Consensus 172 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 242 (513)
+++|.++|++..+..+.+...|..+..+|.. .+++++|...+++..+. -+-+...+..+...+...|++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHccCH
Confidence 3455555555554443344444444333221 12244555555544432 122334444444444445555
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 243 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
++|+..|++..+.+. .+...|..+...+...|++++|+..+++..+
T Consensus 355 ~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~ 400 (553)
T PRK12370 355 IVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLK 400 (553)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555555555444321 1233444444445555555555555555444
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=5.3e-09 Score=105.37 Aligned_cols=263 Identities=9% Similarity=-0.089 Sum_probs=178.0
Q ss_pred chhHHHHHHHHHc-------CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhc---------ccCCHHHHHHHHHHH
Q 010320 119 NGYAFVELMKQLG-------SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAG---------RINNVDLAADLFAEA 182 (513)
Q Consensus 119 ~~~~~~~~l~~~~-------~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~---------~~g~~~~a~~~~~~m 182 (513)
+...|...+++.. ...+.|.+.|+...+.. |-+...|..+..++. ..+++++|...+++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld----P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS----PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 3445556665541 12356888888776532 224555655554433 335589999999999
Q ss_pred HhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 010320 183 ANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF 262 (513)
Q Consensus 183 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 262 (513)
.+.++.+...|..+...+...|++++|...|++..+. -+.+...|..+...+...|++++|+..+++..+.... +..
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 9988879999999999999999999999999999874 2344678888999999999999999999999986543 223
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Q 010320 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAY 341 (513)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (513)
.+..++..+...|++++|+..+++..... .| +...+..+..++...|+.++|...++++... .+.+....+.+...|
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHH
Confidence 34445556777899999999999987643 24 3556777888889999999999999887654 223444455666667
Q ss_pred HhcCChhHHHHHHHHHHhCCCC-CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010320 342 SKCSVTDRIKKIEALMRLIPEK-EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396 (513)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 396 (513)
...|+ .+...++.+.+.... ...+. .+-..|.-.|+-+.+..+ +++.+.
T Consensus 486 ~~~g~--~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 486 CQNSE--RALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hccHH--HHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 77663 555544433332222 21111 133334444555554444 554443
No 57
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.27 E-value=1e-06 Score=84.34 Aligned_cols=343 Identities=7% Similarity=-0.021 Sum_probs=206.4
Q ss_pred CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH
Q 010320 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226 (513)
Q Consensus 150 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~ 226 (513)
.|+..+...|-.=...|-+.|.+-.+..+......-|+. -..+|+.-...|.+.+.++-|..+|....+- .+-+.
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~ 550 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKK 550 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchh
Confidence 334444455544444555555555555555555544442 2345566666666666677777777766653 34455
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010320 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306 (513)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 306 (513)
..|......--..|..+....+|++....-. .....|-....-+-..|+...|..++.+..+.. .-+...|...+..-
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle 628 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLE 628 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHh
Confidence 5666666666666777777777777765422 234445444555666777777777777776643 12466677777777
Q ss_pred HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHH
Q 010320 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM 386 (513)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 386 (513)
.....++.|..+|.+.... .++..+|.--+....-.+..++|.+..+...+.-+.- .-.+.++...+-+.++++.|
T Consensus 629 ~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f--~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDF--HKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred hccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch--HHHHHHHhHHHHHHHHHHHH
Confidence 7777777777777766653 4556666555555555555554444332222211111 11133455666667777777
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
.+.|..-.+ ..|..+-.|-.+...=.+.|++-.|..++++..-.+.+ +...|-..|.+-.+.|..+.|..+..+..+
T Consensus 705 R~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 705 REAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777765554 33444556666666666777788888888877665543 667777788888888888888776655443
Q ss_pred C-----------------------------CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010320 467 Y-----------------------------KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 467 ~-----------------------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
. ...-|.+..-.+...|....++++|.+.|.+..+.+
T Consensus 782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 2 122355556666666777777777888777766543
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=4.5e-08 Score=91.84 Aligned_cols=275 Identities=9% Similarity=-0.027 Sum_probs=218.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010320 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303 (513)
Q Consensus 224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 303 (513)
-|........+-|-..+++.+..++++++.+.. ++....+..-|.++...|+..+-..+=.+|.+.- +-...+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 344444555566677889999999999998764 3577778888889999999888888888887742 22478999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCH
Q 010320 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCL 383 (513)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 383 (513)
--|...|+.++|.++|.+....+. .-...|-.+...|.-.|.-|.|..++....+.-.....|..| +..-|.+.+++
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~n~ 396 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTNNL 396 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhccH
Confidence 999999999999999988766432 234568888899999999999998887777766666666653 66778889999
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCc--ccHhhHHHHHHHHHhcCCHHHH
Q 010320 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GWR--LCRSLYHSKMVMYASQRRVEEM 457 (513)
Q Consensus 384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~--p~~~~~~~li~~~~~~g~~~~A 457 (513)
+.|.+.|.+... ..|.++-+++-+.-.....+.+.+|..+|+..... +-+ --..+++.|..+|.+.+.+++|
T Consensus 397 kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999988877 66777778888877778889999999999976521 111 1334578888999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCC
Q 010320 458 ESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV 508 (513)
Q Consensus 458 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 508 (513)
+..+++..... +-|..+|.++.-.|...|+++.|.+.|.+.. ++.|+.
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n 522 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDN 522 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCcc
Confidence 99999998775 6789999999999999999999999998755 455554
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=3.5e-09 Score=101.84 Aligned_cols=238 Identities=14% Similarity=0.087 Sum_probs=146.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHcC-----CC-CCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhc-----cCC-
Q 010320 262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAG-----PV-MPDTNTY-LLLLRGYAHSGNLPRMEKIYELVKHH-----VDG- 328 (513)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~- 328 (513)
.+...+...|...|+++.|+.+++...+. |. .|...+. +.+...|...+++++|..+|+++... |..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33444555666666666666666554331 21 1222222 22445556666666666666655431 111
Q ss_pred -CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-------CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 010320 329 -KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK-------EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH---- 396 (513)
Q Consensus 329 -~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---- 396 (513)
.-..+++.|-.+|.+.|++++|+...+...++... .+... .+-++..|+..+++++|..++....+.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~-l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ-LSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH-HHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11234455555666666666554443322222111 11111 224777788889999999888765541
Q ss_pred -C-CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CC--cc-cHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 010320 397 -K-TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA----GW--RL-CRSLYHSKMVMYASQRRVEEMESVLKEMEN- 466 (513)
Q Consensus 397 -~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 466 (513)
+ ..+....+++.|...|...|++++|.++++.+... +. .+ ....++.+...|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1 12244678999999999999999999999987532 11 12 244577888899999999999999986544
Q ss_pred ---CC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320 467 ---YK--IDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 467 ---~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
.| .+-...+|.-|...|.+.|+++.|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22 12235688899999999999999999987664
No 60
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=6.8e-07 Score=82.30 Aligned_cols=356 Identities=10% Similarity=0.032 Sum_probs=207.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHH
Q 010320 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQS 211 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 211 (513)
+....|..+|+...... .-+...|-..+..=.++.++..|..+|+.....-+.-...|---+..=-..|++..|..
T Consensus 87 ~e~~RARSv~ERALdvd----~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD----YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHhcc----cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 34556777887665543 22555677777777788888888888888776533333455555555556688888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC-
Q 010320 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG- 290 (513)
Q Consensus 212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 290 (513)
+|+.-.. ..|+...|++.|+.=.+-+.++.|..++++..-. .|++.+|--....=-+.|....+..+|+...+.
T Consensus 163 iferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 163 IFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 8888773 5788888888888888888888888888888753 488888877777777788888888888776652
Q ss_pred CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHhcCChhHHHHHHHHH--------Hh
Q 010320 291 PV-MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE--FPLIRAMICAYSKCSVTDRIKKIEALM--------RL 359 (513)
Q Consensus 291 g~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~--------~~ 359 (513)
|- .-+...|.+...-=.+...++.|.-+|+...+. ++.+ ...|..+...--+-|+....+.++.-= .+
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 10 011223333333333455677777777776665 2222 334444444333445444333332111 11
Q ss_pred CCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcC------------------------------------------
Q 010320 360 IPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHK------------------------------------------ 397 (513)
Q Consensus 360 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~------------------------------------------ 397 (513)
-.+-+..+|. ..+..-...|+.+...++|++.+..-
T Consensus 317 ~np~nYDsWf--dylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 317 KNPYNYDSWF--DYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred hCCCCchHHH--HHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1233444442 24444444466666666665555421
Q ss_pred CCCchHHHHHHH----HHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 010320 398 TSVTTVRIMRCI----VSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSK 473 (513)
Q Consensus 398 ~~~~~~~~~~~l----i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 473 (513)
..|....||..+ ..--.++.++..|.+++.... |..|-..+|...|..-.+.+.+|...++++...+-+ +-|.
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c 471 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENC 471 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhh
Confidence 111111111111 111112334444444444333 555666666666666667777777777777777655 4455
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320 474 KTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
.+|.-....-...|+.+.|..+|+-.+++
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 56665555555666666666666655443
No 61
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.22 E-value=1.2e-07 Score=86.44 Aligned_cols=348 Identities=10% Similarity=0.030 Sum_probs=220.8
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHH
Q 010320 131 GSRPRLALEVLNWRRRQA-GYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKC 209 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A 209 (513)
.+.+..|+.+++....+- ......-....+.+--.+.+.|+++.|+..|+...+..+.-...||.+|.++ .-|+.++.
T Consensus 250 kr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f-~i~d~ekm 328 (840)
T KOG2003|consen 250 KREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAF-AIGDAEKM 328 (840)
T ss_pred hhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhhe-ecCcHHHH
Confidence 456677777777665542 1111112233444444567778888888888776665432334455444433 34666777
Q ss_pred HHHHHHHHHhCC-----------CCCCHHHHH------------------------------------------------
Q 010320 210 QSLFRDLKKEAN-----------ISPSIVTYN------------------------------------------------ 230 (513)
Q Consensus 210 ~~~~~~m~~~~g-----------~~p~~~~~~------------------------------------------------ 230 (513)
.+.|.+|..-.| -.|+....|
T Consensus 329 keaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~ 408 (840)
T KOG2003|consen 329 KEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLES 408 (840)
T ss_pred HHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHH
Confidence 777766642111 122221110
Q ss_pred ---------------HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---------------------H----------H
Q 010320 231 ---------------TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF---------------------T----------Y 264 (513)
Q Consensus 231 ---------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------------------~----------~ 264 (513)
.-..-+.+.|+++.|+++++-+.+..-+.-.. . |
T Consensus 409 lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry 488 (840)
T KOG2003|consen 409 LKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY 488 (840)
T ss_pred HHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc
Confidence 01112568999999999998876542211110 1 1
Q ss_pred HHHH-----HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010320 265 NYLI-----AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339 (513)
Q Consensus 265 ~~li-----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (513)
|.-. +.....|++++|.+.|++...+.-......|++= -.+-..|++++|++.|-++... ...++.+...+.+
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qian 566 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIAN 566 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHH
Confidence 1100 0012357899999999998875433333333332 2356789999999999776543 2345666667777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcH
Q 010320 340 AYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAV 419 (513)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 419 (513)
.|-...+...|.+.+.......+.+. .+.+-|...|-+.|+-..|.+.+-+-.+ -.|.+..+...|..-|....-+
T Consensus 567 iye~led~aqaie~~~q~~slip~dp--~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 567 IYELLEDPAQAIELLMQANSLIPNDP--AILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HHHHhhCHHHHHHHHHHhcccCCCCH--HHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHH
Confidence 78777666655554433333333332 2233588889999999999887655443 4456677777788888888899
Q ss_pred HHHHHHHHHHHhcCCcccHhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010320 420 DKLANFVKRAESAGWRLCRSLYHSKMVMYA-SQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488 (513)
Q Consensus 420 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 488 (513)
++++.+|++.. -+.|+..-|..+|..|. +.|++..|..+|+...++ ++-|..+...|++.+...|-
T Consensus 643 ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 643 EKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999999865 46799999988876654 799999999999999865 57889999999999887775
No 62
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=2.2e-06 Score=79.11 Aligned_cols=302 Identities=12% Similarity=0.065 Sum_probs=212.8
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 010320 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTYNTLI 233 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~li 233 (513)
+...|-.....=...+++..|..+|+....-...+...|---+..=.++++++.|..+++..... -|-+ ..|--.+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHHHHHHH
Confidence 55566666666667889999999999999877678889999999999999999999999999863 4554 3555566
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChH
Q 010320 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLP 313 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 313 (513)
..=-..|++..|.++|++-.+ ..|+...|++.|+.=.+-+.++.|..+|+...- +.|++.+|.-..+-=-+.|.+.
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHH
Confidence 666678999999999999876 479999999999999999999999999999887 5699999999999999999999
Q ss_pred HHHHHHHHHHhccCC--CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHH--
Q 010320 314 RMEKIYELVKHHVDG--KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKS-- 389 (513)
Q Consensus 314 ~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-- 389 (513)
.+..+|+...+.-.. -+...+.++..--.++..+++|.-+++....--+++-....+.-+...=-+-|+-....+.
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999999988774211 1233444444444556667777777766554444332222222222222233443333322
Q ss_pred ------HHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh--hHHHHH-----HHH---HhcCC
Q 010320 390 ------INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS--LYHSKM-----VMY---ASQRR 453 (513)
Q Consensus 390 ------~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~li-----~~~---~~~g~ 453 (513)
++.++. ..|.+..+|--.+..-...|+.+...++++++...- +|-.. .|.-.| -++ ....+
T Consensus 305 ~KRk~qYE~~v~--~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed 381 (677)
T KOG1915|consen 305 GKRKFQYEKEVS--KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAED 381 (677)
T ss_pred hhhhhHHHHHHH--hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334444 335566677777887888899999999999988543 33211 111111 111 24667
Q ss_pred HHHHHHHHHHHHh
Q 010320 454 VEEMESVLKEMEN 466 (513)
Q Consensus 454 ~~~A~~~~~~m~~ 466 (513)
.+.+.++|+...+
T Consensus 382 ~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 382 VERTRQVYQACLD 394 (677)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777766655
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.17 E-value=1.2e-08 Score=89.15 Aligned_cols=240 Identities=10% Similarity=-0.007 Sum_probs=142.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhc
Q 010320 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKC 344 (513)
Q Consensus 265 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (513)
+-+..+|.+.|.+.+|++.|+.-.+. .|-+.||..|-++|.+...++.|+.++.+-.+. ++-|+.....+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 44455555555555555555554442 344445555555555555555555555555443 223333333444444444
Q ss_pred CChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHH
Q 010320 345 SVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLAN 424 (513)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 424 (513)
++.+++.+.++...+....++.... .+...|.-.++.|-|+..+++++.-|... ...|+.+.-+|.-.+++|-++.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiA--cia~~yfY~~~PE~AlryYRRiLqmG~~s--peLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIA--CIAVGYFYDNNPEMALRYYRRILQMGAQS--PELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeee--eeeeccccCCChHHHHHHHHHHHHhcCCC--hHHHhhHHHHHHhhcchhhhHH
Confidence 5555555555554444444443332 34555666677788888888877766543 4567777777777788888777
Q ss_pred HHHHHHhcCCccc--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320 425 FVKRAESAGWRLC--RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 425 ~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
-|.+....--.|+ ...|-.+-......|++..|.+.|+-....+ .-+...++.|.-.-.+.|++++|..+++.....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 7777654333333 2345555556667788888888888777665 445677777777777888888888888776655
Q ss_pred CCCCCCCCCC
Q 010320 503 GYDVPVNAFP 512 (513)
Q Consensus 503 g~~p~~~t~~ 512 (513)
.-..-..+||
T Consensus 459 ~P~m~E~~~N 468 (478)
T KOG1129|consen 459 MPDMAEVTTN 468 (478)
T ss_pred Cccccccccc
Confidence 4433344443
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.11 E-value=3.4e-07 Score=89.46 Aligned_cols=297 Identities=12% Similarity=0.069 Sum_probs=207.6
Q ss_pred hHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHH
Q 010320 121 YAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAY 200 (513)
Q Consensus 121 ~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~ 200 (513)
..|...+-.=++..+.|++.++.-... +......+......+.+.|+.++|..+|..+.++++.|..-|..+..+.
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~----I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ----ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 456555556678999999888764432 3334455567788899999999999999999999888888888888777
Q ss_pred HHcC-----ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010320 201 MYNG-----LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV-DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274 (513)
Q Consensus 201 ~~~g-----~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 274 (513)
.-.. ..+...++|+++... -|.......+.-.+.....+ ..+...+..+...|++ .+|+.|-..|...
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~---yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~ 156 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEK---YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP 156 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHh---CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh
Confidence 3332 578889999999865 35544444333333322223 3456677777788874 3566666666655
Q ss_pred cCHHHHHHHHHHHHcC----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010320 275 WMWGKVEEIYQMMKAG----P----------VMPDT--NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338 (513)
Q Consensus 275 g~~~~a~~~~~~m~~~----g----------~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (513)
...+-..+++...... | -.|+. .++..+...|...|++++|+++++..++.. +..+..|..-.
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Ka 235 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKA 235 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 5555555666555421 1 12343 455777888899999999999999999873 33477888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHH----H--HHHHHH
Q 010320 339 CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVR----I--MRCIVS 411 (513)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~----~--~~~li~ 411 (513)
..|-+.|++.+|.+..+..+.+...+- ++|+-.+..+.++|++++|.+++....+.+..+. +.. + ......
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~DR--yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLADR--YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChhhH--HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence 999999999988888887777765443 2355688889999999999999987776653221 111 1 234567
Q ss_pred HHHhcCcHHHHHHHHHHHH
Q 010320 412 SYFRCNAVDKLANFVKRAE 430 (513)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~ 430 (513)
+|.+.|++..|++.|..+.
T Consensus 314 a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 314 AYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 8888999988887766554
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.08 E-value=1.7e-07 Score=78.28 Aligned_cols=200 Identities=11% Similarity=0.046 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHH
Q 010320 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRV 376 (513)
Q Consensus 297 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 376 (513)
.+..-|.-.|...|+...|.+-+++..+.+ +.+..+|..+...|.+.|+.+.|.+.++....+.+++-... |+ ....
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVL-NN-YG~F 112 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVL-NN-YGAF 112 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchh-hh-hhHH
Confidence 355667777888888888888888888874 34666788888888888988888888887777766554433 32 6777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHH
Q 010320 377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456 (513)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 456 (513)
+|..|++++|...|++.+....-+....+|..+.-+..+.|+.+.|.+.|++..+.... .....-.+.....+.|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchH
Confidence 89999999999999999988776666778888888888999999999999998876543 33455677788889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320 457 MESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 457 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
|..+++.....+. ++.......|+.-...|+.+.+-++=..+.+
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999988774 8999999999999999999988887665544
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.08 E-value=2.4e-06 Score=81.83 Aligned_cols=193 Identities=11% Similarity=0.002 Sum_probs=125.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH--
Q 010320 126 LMKQLGSRPRLALEVLNWRRRQAGYGTPMTK-EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMY-- 202 (513)
Q Consensus 126 ~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~-- 202 (513)
.+....++++.+...+....+.... .++. .........+...|++++|.+++++..+..+.+...+.. ...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~ 90 (355)
T cd05804 14 LLLLLGGERPAAAAKAAAAAQALAA--RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLG 90 (355)
T ss_pred HHHHhcCCcchHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhc
Confidence 3333344555555555444433221 1222 222223344567899999999999988876556656553 222222
Q ss_pred --cCChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHH
Q 010320 203 --NGLSDKCQSLFRDLKKEANISPSI-VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGK 279 (513)
Q Consensus 203 --~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 279 (513)
.+..+.+.+.+.... ...|+. .....+...+...|++++|...+++..+... .+...+..+...+...|++++
T Consensus 91 ~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 91 DFSGMRDHVARVLPLWA---PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred ccccCchhHHHHHhccC---cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHH
Confidence 455555555555421 233443 4455667788899999999999999988653 356777888889999999999
Q ss_pred HHHHHHHHHcCCC-CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320 280 VEEIYQMMKAGPV-MPD--TNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 280 a~~~~~~m~~~g~-~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
|...+++.....- .|+ ...|..+...+...|++++|..+++.....
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 9999998776321 233 235667888899999999999999987643
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=2.9e-07 Score=84.96 Aligned_cols=155 Identities=9% Similarity=-0.072 Sum_probs=104.2
Q ss_pred HhcccCCHHHHHHHHHHHHhccC--C--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010320 165 FAGRINNVDLAADLFAEAANKHL--K--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240 (513)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 240 (513)
.....+..+.++.-+.++..... + ....|..+...|...|+.++|...|++..+. -+.+...|+.+...+...|
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAG 112 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCC
Confidence 34455677777777777775433 1 2456777777788888888888888887753 2345677888888888888
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010320 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320 (513)
Q Consensus 241 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 320 (513)
++++|...|++..+.... +..+|..+..++...|++++|++.|+...+. .|+..........+...++.++|...|+
T Consensus 113 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 888888888888765332 4566777777777788888888888887763 3443222222223345567777877776
Q ss_pred HHHh
Q 010320 321 LVKH 324 (513)
Q Consensus 321 ~~~~ 324 (513)
....
T Consensus 190 ~~~~ 193 (296)
T PRK11189 190 QRYE 193 (296)
T ss_pred HHHh
Confidence 5443
No 68
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.07 E-value=5.5e-06 Score=79.47 Aligned_cols=376 Identities=12% Similarity=0.054 Sum_probs=241.5
Q ss_pred cCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHH
Q 010320 117 HSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL 196 (513)
Q Consensus 117 ~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 196 (513)
+++....-.+.-.+-++.++|........+. -.-+.+.|..+.-.+-...++++|.+.|......+..|...|.-+
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~----d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl 115 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRN----DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL 115 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhcc----CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 5566666555555667777787776654432 334777888888888888999999999999988877788888888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHH------
Q 010320 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN-LSPNVFTYNYLIA------ 269 (513)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~------ 269 (513)
--.-++.|+++...+.-.++.+. .+-....|..+..++.-.|+...|..++++..+.. -.|+...|.....
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~ 193 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQ 193 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 77778888888888888888763 23445678888888888999999999999988654 2456655554433
Q ss_pred HHHHccCHHHHHHHHHHHHcCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh-cCCh
Q 010320 270 GYMTAWMWGKVEEIYQMMKAGPVMPDTNTY-LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK-CSVT 347 (513)
Q Consensus 270 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~ 347 (513)
...+.|..++|.+.+..-... ..|...| ..-...+.+.+++++|..++..++... +.+...|-.+..++++ .+..
T Consensus 194 i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~ 270 (700)
T KOG1156|consen 194 ILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDML 270 (700)
T ss_pred HHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhH
Confidence 344577777777766554432 2233333 334556778899999999999888863 3344555555556642 2222
Q ss_pred hHHHHHHHHHHhCCCCCcccc------------------------------hHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 010320 348 DRIKKIEALMRLIPEKEYRPW------------------------------LNVLLIRVYAKEDCLEEMEKSINDAFE-- 395 (513)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~------------------------------~~~~li~~~~~~~~~~~a~~~~~~~~~-- 395 (513)
+....++..+.+......-+. +...+...|-.-...+-.+++.-.+..
T Consensus 271 ~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L 350 (700)
T KOG1156|consen 271 EALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSL 350 (700)
T ss_pred HHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhc
Confidence 222244444443322211110 011122222211111111111111111
Q ss_pred --cC---------CCCchHH--HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc-HhhHHHHHHHHHhcCCHHHHHHHH
Q 010320 396 --HK---------TSVTTVR--IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLC-RSLYHSKMVMYASQRRVEEMESVL 461 (513)
Q Consensus 396 --~~---------~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 461 (513)
.+ ..+|... ++-.++..+-+.|+++.|..+++...++ .|+ ++.|..-.+.+...|++++|..++
T Consensus 351 ~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l 428 (700)
T KOG1156|consen 351 SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWL 428 (700)
T ss_pred ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 00 1233333 3445677888899999999999988754 344 344555567888899999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010320 462 KEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504 (513)
Q Consensus 462 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 504 (513)
++..+.+ .+|...=.--..-..++.+.++|.++....-+.|.
T Consensus 429 ~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 429 DEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 9999887 45654433555666788899999998888877775
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4e-07 Score=85.66 Aligned_cols=282 Identities=11% Similarity=-0.013 Sum_probs=178.4
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010320 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~ 231 (513)
..-+......-.+-+-..+++.+..++++...+..+.+...+-.=|..+...|+..+-..+=.+|... .+-...+|-+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~a 317 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFA 317 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhh
Confidence 33455566666666777788888888888877776666666666677777778777777777777754 3445577888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHHh
Q 010320 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKA--GPVMPDTNTYLLLLRGYAH 308 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~ll~~~~~ 308 (513)
+.-.|-..|...+|.+.|.+.... .|. ...|-.....|+-.|..|+|+..|...-+ .|. ..-+--+.--|.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~---hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC---HLPSLYLGMEYMR 392 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC---cchHHHHHHHHHH
Confidence 877777778888888888776543 222 35677777777778888888877766544 121 1112223334666
Q ss_pred cCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCcccch--HHHHHHHHHhcCC
Q 010320 309 SGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMR----LIPEKEYRPWL--NVLLIRVYAKEDC 382 (513)
Q Consensus 309 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~--~~~li~~~~~~~~ 382 (513)
.++++.|.+.|.+.... .+.|..+.+-+.-.....+.+.+|...++... ...... ..|. ..-|..+|.+.+.
T Consensus 393 t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~-~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK-IFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred hccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc-cchhHHHHhHHHHHHHHhh
Confidence 77888888888777664 34466666666555555565665555443222 111111 1221 2236677777777
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHH
Q 010320 383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMV 446 (513)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 446 (513)
+++|+..+++.+. ..+.+..++.++.-.|...|+++.|.+.|.+.. .+.|+..+-..++.
T Consensus 471 ~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 471 YEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 7777777777666 344556667777777777777777777777665 34555544444444
No 70
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=2.5e-07 Score=89.26 Aligned_cols=134 Identities=16% Similarity=0.143 Sum_probs=77.9
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHh----CC-CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-
Q 010320 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKE----AN-ISPSIVT-YNTLISVFGRLLLVDHMEAAFQEIKDS-----NL- 257 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~g-~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~- 257 (513)
..+...+...|...|++++|..+++...+. .| ..|.+.+ .+.+...|...+++.+|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555777777777777777777665432 12 1233332 233566677777777777777777631 21
Q ss_pred CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHc-----CCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010320 258 SP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-----GPVM-PD-TNTYLLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 258 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~-p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
.| -..+++.|-..|.+.|++++|...++...+ .|.. |. ..-++.+...|+..+++++|..++....
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 11 134556666677777777777666655432 1211 22 2344555666777777777777776543
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.05 E-value=4e-06 Score=82.00 Aligned_cols=355 Identities=12% Similarity=0.069 Sum_probs=231.1
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-HHHHH
Q 010320 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-IVTYN 230 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~~ 230 (513)
++-|...|..+.-++...|+++.+.+.|++....-+...+.|+.+-..|...|.-..|..+.+.-... .-.|+ ...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~-~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK-SEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc-ccCCCcchHHH
Confidence 66799999999999999999999999999987655557889999999999999999999988876543 11243 33332
Q ss_pred HHHHHHHh-cCCh--------------------------------------------------hHHHHHHHHHHHCCCCC
Q 010320 231 TLISVFGR-LLLV--------------------------------------------------DHMEAAFQEIKDSNLSP 259 (513)
Q Consensus 231 ~li~~~~~-~g~~--------------------------------------------------~~A~~~~~~m~~~g~~p 259 (513)
..-..|.+ .+.+ .++.+.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 22222221 1222 3444555555543321
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-cC-----------
Q 010320 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH-VD----------- 327 (513)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~----------- 327 (513)
|..+.-.+---|+..++++.|.+..++..+-+-.-+...|..|.-.+...+++.+|+.+.+...+. |.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 222222233345566778888888888887644557788888888888888888888888775542 21
Q ss_pred -------CCcHHHHHHHHHHHHh---------cCC--------------hhHHH----HHHHHH----HhC------CCC
Q 010320 328 -------GKEFPLIRAMICAYSK---------CSV--------------TDRIK----KIEALM----RLI------PEK 363 (513)
Q Consensus 328 -------~~~~~~~~~li~~~~~---------~g~--------------~~~a~----~~~~~~----~~~------~~~ 363 (513)
.--..|+..++..+-. .|. ..++. .+.... +.+ +..
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 0011122222222220 000 00000 000000 000 100
Q ss_pred Ccc-----cc-----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010320 364 EYR-----PW-----LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433 (513)
Q Consensus 364 ~~~-----~~-----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 433 (513)
... +| .+......+.+.++.++|...+.+... ..+.....|......+...|+.++|.+.|.......
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 011 11 122355667777888888877766655 445556667777777888899999999999877544
Q ss_pred CcccHhhHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCC
Q 010320 434 WRLCRSLYHSKMVMYASQRRVEEMES--VLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511 (513)
Q Consensus 434 ~~p~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 511 (513)
.. ++....++...+.+.|+..-|.. ++.++.+.| +-+...|-.+...+.+.|+.+.|.+.|+...+..-.-++..|
T Consensus 715 P~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pF 792 (799)
T KOG4162|consen 715 PD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPF 792 (799)
T ss_pred CC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcccc
Confidence 22 35567888899999998888888 999999988 678899999999999999999999999988776555555544
Q ss_pred C
Q 010320 512 P 512 (513)
Q Consensus 512 ~ 512 (513)
.
T Consensus 793 s 793 (799)
T KOG4162|consen 793 S 793 (799)
T ss_pred c
Confidence 3
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=4.8e-08 Score=85.46 Aligned_cols=226 Identities=12% Similarity=0.023 Sum_probs=147.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 010320 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY-NYLIAGYM 272 (513)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~ 272 (513)
+.+.++|.+.|.+.+|.+.|+.-.++ .|-+.||-.|-++|.+..+.+.|+.+|.+-.+. .|-.+|| .-+...+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 56778888889999998888887765 677888888888999999999999888887764 3544554 34556667
Q ss_pred HccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHH
Q 010320 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKK 352 (513)
Q Consensus 273 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 352 (513)
..++.++|.++|+...+.. ..++.....+...|.-.++++.|+.++.++.+.|.. +...|+.+.-+|.-.+++|.+..
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 7788888888888877643 235666677777788888888899999888888764 45556666666666666665544
Q ss_pred HHHHHH-hCCCCC--cccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010320 353 IEALMR-LIPEKE--YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429 (513)
Q Consensus 353 ~~~~~~-~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 429 (513)
.++... .+..++ ...| |+ +.......|++..|.+.|+-.+.. .+.....+|.|.-.-.+.|++++|..++...
T Consensus 380 sf~RAlstat~~~~aaDvW-YN-lg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVW-YN-LGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHhhccCcchhhhhh-hc-cceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 433222 222222 2223 21 444444556666666666554442 2333444555555555666666666666655
Q ss_pred H
Q 010320 430 E 430 (513)
Q Consensus 430 ~ 430 (513)
.
T Consensus 456 ~ 456 (478)
T KOG1129|consen 456 K 456 (478)
T ss_pred h
Confidence 4
No 73
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.02 E-value=6.3e-06 Score=79.11 Aligned_cols=353 Identities=10% Similarity=0.081 Sum_probs=228.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
-+..++|...|....... +-+...|.-+--.-++.|+++...+...+..+..+.....|..+..++.-.|+...|.
T Consensus 88 dK~Y~eaiKcy~nAl~~~----~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE----KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888776643 2366677776666678889988888888888766667888999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH------HHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHccCHHHHHHH
Q 010320 211 SLFRDLKKEANISPSIVTYNTLI------SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTY-NYLIAGYMTAWMWGKVEEI 283 (513)
Q Consensus 211 ~~~~~m~~~~g~~p~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~ 283 (513)
++.++..+...-.|+...|.... ....+.|.++.|.+.+..-... + .|...+ .+-...+.+.+++++|..+
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~ 241 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKV 241 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHH
Confidence 99999987533347766664333 2345667777777776655432 1 233333 3344567778888888888
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHH-hcCChHHHH-HHHHHH----------------------------------HhccC
Q 010320 284 YQMMKAGPVMPDTNTYLLLLRGYA-HSGNLPRME-KIYELV----------------------------------KHHVD 327 (513)
Q Consensus 284 ~~~m~~~g~~p~~~t~~~ll~~~~-~~g~~~~a~-~~~~~~----------------------------------~~~~~ 327 (513)
|..++.. .||..-|...+..+. +..+.-++. .+|... .+.|+
T Consensus 242 y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 242 YRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 8888875 377666655544443 222222222 333332 33333
Q ss_pred CCcHHHHHHHHHHHHhcCChhHHHHH-HHHHHhCCC--------------CCcccchHHHHHHHHHhcCCHHHHHHHHHH
Q 010320 328 GKEFPLIRAMICAYSKCSVTDRIKKI-EALMRLIPE--------------KEYRPWLNVLLIRVYAKEDCLEEMEKSIND 392 (513)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~--------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 392 (513)
++ ++..+...|-.-...+-.++. ......+.. +....|++-.++..+-..|+++.|+.+++.
T Consensus 320 p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 22 222333333221111111111 111112211 122235455688889999999999999999
Q ss_pred HHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010320 393 AFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS 472 (513)
Q Consensus 393 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 472 (513)
.+. ..|+-+..|..=.+.+.+.|+++.|..++++..+.. .+|...-.--..-..+.++.++|.++....-+.|. +
T Consensus 397 AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~ 471 (700)
T KOG1156|consen 397 AID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--G 471 (700)
T ss_pred Hhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--c
Confidence 887 566667777777788999999999999999998766 34655544666677789999999999998887774 2
Q ss_pred HH--------HHHHH--HHHHHhcCCHhHHHHHHHHH
Q 010320 473 KK--------TFWIM--YYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 473 ~~--------~~~~l--i~~~~~~g~~~~A~~~~~~m 499 (513)
.. .|-.+ ..+|.++|++..|++=|..+
T Consensus 472 ~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 472 AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 21 22222 25678888888887766554
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.99 E-value=8.2e-06 Score=78.10 Aligned_cols=164 Identities=12% Similarity=-0.035 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010320 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l 232 (513)
...|..+...+...|+.+.+.+.+....+....+ ..........+...|++++|.+++++.... .+.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-
Confidence 3445555555556666666666666655443322 122222334455667777777777776653 2333334332
Q ss_pred HHHHHh----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 010320 233 ISVFGR----LLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307 (513)
Q Consensus 233 i~~~~~----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 307 (513)
...+.. .+..+.+.+.++. ..+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 222222 3344444444443 1112222 2333445556667777777777777776643 223556666666777
Q ss_pred hcCChHHHHHHHHHHHhc
Q 010320 308 HSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 308 ~~g~~~~a~~~~~~~~~~ 325 (513)
..|++++|...+++..+.
T Consensus 160 ~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 160 MQGRFKEGIAFMESWRDT 177 (355)
T ss_pred HcCCHHHHHHHHHhhhhc
Confidence 777777777777766553
No 75
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=2.1e-07 Score=85.95 Aligned_cols=220 Identities=12% Similarity=0.087 Sum_probs=161.5
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHH
Q 010320 200 YMYNGLSDKCQSLFRDLKKEANISPSIV-TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278 (513)
Q Consensus 200 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 278 (513)
+.-.|+.-.|.+-|+..... .|... .|--+...|....+-++....|++....+.. |..+|..-...+.-.++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l---~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKL---DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhcCCchhhhhhHHHHHhc---CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 45578888999999988863 33333 3778888899999999999999998876543 6677777777777788899
Q ss_pred HHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010320 279 KVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357 (513)
Q Consensus 279 ~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 357 (513)
+|..=|++.+. +.| +...|.-+.-+..+.+++++++..|++.++. ++....+|+-....+...+++++|.+.++..
T Consensus 412 ~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 412 EAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 99999999887 445 4777888888888899999999999999887 5667788999999999999999999888888
Q ss_pred HhCCCC------CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010320 358 RLIPEK------EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429 (513)
Q Consensus 358 ~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 429 (513)
.++.+. +..+.+.-.++..- -.+++..|++++.+.++ ..|.....|..|...-.+.|+.++|+++|++.
T Consensus 489 i~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 489 IELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 877766 33333222111111 23667777777776666 33334445666666666777777777777654
No 76
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.3e-05 Score=72.90 Aligned_cols=303 Identities=10% Similarity=0.022 Sum_probs=206.0
Q ss_pred CCCCHHHHHHHHHHhccc--CCHHHHHHHHHHHHhc-cCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 010320 152 TPMTKEEYTKGIKFAGRI--NNVDLAADLFAEAANK-HLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 227 (513)
+++.......-+.+++.. ++-..|...+-..... -++ |+.....+...+...|+.++|...|++... +.|+..
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i 266 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC---ANPDNV 266 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh---CChhhh
Confidence 444444444455555443 3333444443333322 234 899999999999999999999999998874 345443
Q ss_pred -HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010320 228 -TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306 (513)
Q Consensus 228 -~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 306 (513)
........+.+.|++++...+...+.... +-+...|-.-.......+++..|+.+-++-++.. .-+...|..-...+
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL 344 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLL 344 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHH
Confidence 23333344567888888888888776531 1234445555555667788999999988887733 12455666666778
Q ss_pred HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHH-HHHHhCCCCCcccchHHHHHH--HH-HhcCC
Q 010320 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIE-ALMRLIPEKEYRPWLNVLLIR--VY-AKEDC 382 (513)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~~li~--~~-~~~~~ 382 (513)
...|++++|.-.|+..... -+.+...|.-|+.+|...|.+.+|...- ..++.++. +..+. .++. .+ -...-
T Consensus 345 ~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~-sA~~L---tL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN-SARSL---TLFGTLVLFPDPRM 419 (564)
T ss_pred HhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc-chhhh---hhhcceeeccCchh
Confidence 8899999999999887775 2457889999999999999887765442 23333332 22222 1221 11 12234
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010320 383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462 (513)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (513)
-++|.+++++.+.. .|.-....+.+...|...|..+++..++++... ..||....+.|.+.+...+.+++|+..|.
T Consensus 420 rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 420 REKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYY 495 (564)
T ss_pred HHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 57888888887764 344455577788888999999999999998764 34788888999999999999999999998
Q ss_pred HHHhCC
Q 010320 463 EMENYK 468 (513)
Q Consensus 463 ~m~~~~ 468 (513)
...+.+
T Consensus 496 ~ALr~d 501 (564)
T KOG1174|consen 496 KALRQD 501 (564)
T ss_pred HHHhcC
Confidence 888765
No 77
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=9.1e-06 Score=72.33 Aligned_cols=347 Identities=12% Similarity=0.059 Sum_probs=173.9
Q ss_pred HHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010320 122 AFVELMKQL---GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG 198 (513)
Q Consensus 122 ~~~~~l~~~---~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~ 198 (513)
.....+..| -++.++|+..+..+.+.. .++...+..|.-.+.-.|.+.+|..+-....+ ++-.-..|+.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~----~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k----~pL~~RLlfh 129 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKD----DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK----TPLCIRLLFH 129 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccC----CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC----ChHHHHHHHH
Confidence 344444444 467888888888776532 34566666666666667888888777665443 4444445555
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHccCH
Q 010320 199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA-GYMTAWMW 277 (513)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~ 277 (513)
.-.+.++-++-..+-+.+.. ...---+|....-....+++|++++.+....+ |+....|.-+. +|.+..-+
T Consensus 130 lahklndEk~~~~fh~~LqD------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYy 201 (557)
T KOG3785|consen 130 LAHKLNDEKRILTFHSSLQD------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYY 201 (557)
T ss_pred HHHHhCcHHHHHHHHHHHhh------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchh
Confidence 55666776666655555542 11222344444445557899999999998753 56666666554 56677777
Q ss_pred HHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHh--cCChHHH--HHH----------HHHHHhcc----------------
Q 010320 278 GKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAH--SGNLPRM--EKI----------YELVKHHV---------------- 326 (513)
Q Consensus 278 ~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~--~g~~~~a--~~~----------~~~~~~~~---------------- 326 (513)
+-+.++++--.+. -|| ....+.......+ .|+..+. .++ .+.+.+++
T Consensus 202 dvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~ 279 (557)
T KOG3785|consen 202 DVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPS 279 (557)
T ss_pred hhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchH
Confidence 8788887776653 345 3444443333322 2222111 111 11111111
Q ss_pred ---CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHH--HHhcC-------CHHHHHHHHHHHH
Q 010320 327 ---DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRV--YAKED-------CLEEMEKSINDAF 394 (513)
Q Consensus 327 ---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~-------~~~~a~~~~~~~~ 394 (513)
..|... -.|+--|.+.+++. ++..++++..+.....+ ++.+ +...| +..-|.+.|+-.-
T Consensus 280 L~~~IPEAR--lNL~iYyL~q~dVq---eA~~L~Kdl~PttP~Ey----ilKgvv~aalGQe~gSreHlKiAqqffqlVG 350 (557)
T KOG3785|consen 280 LMKHIPEAR--LNLIIYYLNQNDVQ---EAISLCKDLDPTTPYEY----ILKGVVFAALGQETGSREHLKIAQQFFQLVG 350 (557)
T ss_pred HHhhChHhh--hhheeeecccccHH---HHHHHHhhcCCCChHHH----HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc
Confidence 011111 12333455566444 44555555443332222 2221 11112 3344444443332
Q ss_pred hcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010320 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKK 474 (513)
Q Consensus 395 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 474 (513)
+.+...+++.--.++...+.-..++|+++.+++.++..-..-|...|| +..+++..|.+.+|+++|-.+....++ |..
T Consensus 351 ~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~ 428 (557)
T KOG3785|consen 351 ESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKI 428 (557)
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhH
Confidence 222222211112334444455555666666555555444433443333 455566666666666666555544433 333
Q ss_pred HHH-HHHHHHHhcCCHhHHHHHHH
Q 010320 475 TFW-IMYYAYATCGQRRKVNQVLG 497 (513)
Q Consensus 475 ~~~-~li~~~~~~g~~~~A~~~~~ 497 (513)
+|. .|.++|.++|+++.|++++-
T Consensus 429 ~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 429 LYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHH
Confidence 333 34455666666666555443
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=8.7e-07 Score=81.80 Aligned_cols=182 Identities=12% Similarity=-0.050 Sum_probs=125.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHH
Q 010320 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL 212 (513)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 212 (513)
..+.++.-+..+.........-....|..+...|.+.|+.++|...|++..+..+.+...|+.+...+...|++++|.+.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34445555555544322111122456777888889999999999999999998777899999999999999999999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010320 213 FRDLKKEANISP-SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291 (513)
Q Consensus 213 ~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 291 (513)
|++..+. .| +..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|.+.|++.....
T Consensus 121 ~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLEL---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999863 45 46788888899999999999999999998754 443322222333445678999999997755422
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010320 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
.|+...+ .......|+.+.+ +.++.+.+
T Consensus 196 -~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~ 223 (296)
T PRK11189 196 -DKEQWGW---NIVEFYLGKISEE-TLMERLKA 223 (296)
T ss_pred -CccccHH---HHHHHHccCCCHH-HHHHHHHh
Confidence 3332222 2223345666554 35555543
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.93 E-value=1.5e-06 Score=72.77 Aligned_cols=191 Identities=10% Similarity=-0.066 Sum_probs=153.2
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
+...|.-.|.+.|+...|.+-+++..+..+.+..+|..+...|-+.|+.+.|.+-|++..+. -+-+-.+.|...-.+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHH
Confidence 44556777889999999999999999988778889999999999999999999999998863 2334577888888889
Q ss_pred hcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHHH
Q 010320 238 RLLLVDHMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPRM 315 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a 315 (513)
..|.+++|...|++....-.-+ -..+|..+.-+..+.|+.+.|.+.|++-.+.. |+ ..+...+.+...+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999988752211 24678888888889999999999999988743 43 56778888889999999999
Q ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHH
Q 010320 316 EKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKI 353 (513)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 353 (513)
..+++.....+. ++..+.-..|..--..|+.+.+.+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999998888766 7777666666666677766655443
No 80
>PF12854 PPR_1: PPR repeat
Probab=98.91 E-value=2.1e-09 Score=62.20 Aligned_cols=32 Identities=38% Similarity=0.528 Sum_probs=14.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010320 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252 (513)
Q Consensus 221 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (513)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=5.6e-06 Score=75.16 Aligned_cols=292 Identities=8% Similarity=-0.046 Sum_probs=200.6
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHccCH
Q 010320 199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF-TYNYLIAGYMTAWMW 277 (513)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~ 277 (513)
+.+..++...|...+-.+....-++-|+.....+.+.+...|+.++|+..|++..-.+ |+.. ......-.+.+.|++
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCH
Confidence 3344566666666555444433466778888999999999999999999999987632 3322 122222334578899
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010320 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357 (513)
Q Consensus 278 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 357 (513)
+....+...+.... .-....|..-.......++++.|+.+-++.++.. +.+...|-.-...+...|+.+.|.-+++..
T Consensus 283 e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 283 EQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred hhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 99888888876532 1233344444555567788999999998888753 234555555555677788888777777766
Q ss_pred HhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH-HHHH-hcCcHHHHHHHHHHHHhcCCc
Q 010320 358 RLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV-SSYF-RCNAVDKLANFVKRAESAGWR 435 (513)
Q Consensus 358 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~~~~~~~~ 435 (513)
..+.+..... |.-++.+|...|++.+|.-.-+...+. .+.+..++..+. ..|. ....-++|.++++..... .
T Consensus 361 q~Lap~rL~~--Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~ 434 (564)
T KOG1174|consen 361 QMLAPYRLEI--YRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--N 434 (564)
T ss_pred HhcchhhHHH--HHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--C
Confidence 6555544444 446999999999999998776665542 222344444331 2222 233467899999876543 3
Q ss_pred cc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320 436 LC-RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 436 p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
|+ ....+.+...+...|..++++.+++.... ..||....+.|.+.+...+.+++|++.|....+.
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 43 34466777888899999999999998875 3689999999999999999999999988776544
No 82
>PF12854 PPR_1: PPR repeat
Probab=98.88 E-value=2.5e-09 Score=61.89 Aligned_cols=34 Identities=38% Similarity=0.542 Sum_probs=27.4
Q ss_pred CCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010320 255 SNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 255 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 288 (513)
+|+.||..|||+||++||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 0567888888888888888888888888888874
No 83
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.80 E-value=0.00015 Score=68.47 Aligned_cols=376 Identities=9% Similarity=0.057 Sum_probs=225.1
Q ss_pred cCchhHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH
Q 010320 117 HSNGYAFVELMKQLGS-RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA 195 (513)
Q Consensus 117 ~p~~~~~~~~l~~~~~-~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~ 195 (513)
.-|..+|..+++.... ..+++.+.++.+... ++.+...|..-|+.-.+.++++...++|.+-...-+ +...|..
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~----FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNV----FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhcc----CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHH
Confidence 4477899999999965 556788888877553 566888999999999999999999999998776422 6778887
Q ss_pred HHHHHHH-cCChH----HHHHHHHHHHHhCCCCCCH-HHHHHHHHHH---------HhcCChhHHHHHHHHHHHCCCCC-
Q 010320 196 LLGAYMY-NGLSD----KCQSLFRDLKKEANISPSI-VTYNTLISVF---------GRLLLVDHMEAAFQEIKDSNLSP- 259 (513)
Q Consensus 196 li~~~~~-~g~~~----~A~~~~~~m~~~~g~~p~~-~~~~~li~~~---------~~~g~~~~A~~~~~~m~~~g~~p- 259 (513)
-|.---+ .|+.. .....|+-...+.|+.+-. ..|+..+..+ ....+++...++++++...-+.-
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 7764333 23332 3334455544444544332 2344444332 33345667778888887542211
Q ss_pred -----CHHHHHHHHHHHH-------HccCHHHHHHHHHHHHc--CCCCCCHHH---------------HHHHH-------
Q 010320 260 -----NVFTYNYLIAGYM-------TAWMWGKVEEIYQMMKA--GPVMPDTNT---------------YLLLL------- 303 (513)
Q Consensus 260 -----~~~~~~~li~~~~-------~~g~~~~a~~~~~~m~~--~g~~p~~~t---------------~~~ll------- 303 (513)
|-..|..=|+-.. +...+..|.+++++... +|+..+..+ |-.+|
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 1122221121111 12234455555555432 232111100 11111
Q ss_pred ------------------------------------------HHHHhcCC-------hHHHHHHHHHHHhccCCCcHHHH
Q 010320 304 ------------------------------------------RGYAHSGN-------LPRMEKIYELVKHHVDGKEFPLI 334 (513)
Q Consensus 304 ------------------------------------------~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~ 334 (513)
+.+...|+ .+++.++++..++.-..-+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222 23334444443332112222233
Q ss_pred HHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 010320 335 RAMICAYSKCS---VTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVS 411 (513)
Q Consensus 335 ~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 411 (513)
..+.+---..- ..+...+..+.+......+..-. +-.++..-.+..-++.|..+|.+..+.+..+..+.++++++.
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv-~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mE 410 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLV-YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALME 410 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCcee-hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHH
Confidence 32222111111 12222233333333333332222 335777777888899999999999998877777888889988
Q ss_pred HHHhcCcHHHHHHHHHH-HHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCC
Q 010320 412 SYFRCNAVDKLANFVKR-AESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS--KKTFWIMYYAYATCGQ 488 (513)
Q Consensus 412 ~~~~~~~~~~a~~~~~~-~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~ 488 (513)
-|| .++.+-|.++|+. ++..|- ++......++.+...++-..|..+|++....++.|+ ...|..++.--..-|+
T Consensus 411 y~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 411 YYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 665 5788899999994 455442 344457788888899999999999999998866655 4789999999999999
Q ss_pred HhHHHHHHHHHHH
Q 010320 489 RRKVNQVLGLMCK 501 (513)
Q Consensus 489 ~~~A~~~~~~m~~ 501 (513)
...+.++-+++..
T Consensus 488 L~si~~lekR~~~ 500 (656)
T KOG1914|consen 488 LNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887754
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.79 E-value=2.2e-07 Score=84.53 Aligned_cols=250 Identities=8% Similarity=0.034 Sum_probs=112.3
Q ss_pred cccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 010320 167 GRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHM 245 (513)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 245 (513)
.-.|++..++.-.+ ......+ .......+.+++...|+.+.+ ..++... -.|.......+...+...++-+.+
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~--~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKS--SSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TT--SSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccC--CChhHHHHHHHHHHHhCccchHHH
Confidence 34566666664444 2222111 334445555666666665533 2334322 245555554444444333333444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010320 246 EAAFQEIKDSNLSPNVFTYNYL-IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 246 ~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
..-+++....+...+..++..+ ...+...|++++|++++..- -+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444333322222122222222 23344456666666655432 2445555566666666666666666666665
Q ss_pred ccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010320 325 HVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR 404 (513)
Q Consensus 325 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 404 (513)
.+ .|.. ...+..++ +..+.-.+.+.+|..+|+++..+ .++++.
T Consensus 160 ~~--eD~~-l~qLa~aw--------------------------------v~l~~g~e~~~~A~y~f~El~~~--~~~t~~ 202 (290)
T PF04733_consen 160 ID--EDSI-LTQLAEAW--------------------------------VNLATGGEKYQDAFYIFEELSDK--FGSTPK 202 (290)
T ss_dssp CS--CCHH-HHHHHHHH--------------------------------HHHHHTTTCCCHHHHHHHHHHCC--S--SHH
T ss_pred cC--CcHH-HHHHHHHH--------------------------------HHHHhCchhHHHHHHHHHHHHhc--cCCCHH
Confidence 32 2222 12222222 22222223455666666665443 122344
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 010320 405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV-EEMESVLKEMEN 466 (513)
Q Consensus 405 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 466 (513)
+++.+..++...|++++|.+++.+....... +..+...+|.+....|+. +.+.+++.++..
T Consensus 203 ~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 203 LLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 5566666666666666666666655433322 334444444444445554 445555555554
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.78 E-value=5.6e-07 Score=81.86 Aligned_cols=129 Identities=12% Similarity=0.082 Sum_probs=93.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010320 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (513)
+.+..|.+.++++.|.+.++.|.+-.....-..+..+.+..+...+.+.+|..+|+++.+. ..++..+.+.+..++...
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~ 214 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQL 214 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHh
Confidence 5788889999999999999998875332222222233333333344789999999998754 567888899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-hHHHHHHHHHHHC
Q 010320 452 RRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR-RKVNQVLGLMCKN 502 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 502 (513)
|++++|.+++++..+.+ +-+..+...++-+....|+. +.+.+++.++...
T Consensus 215 ~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp T-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999988776 45777888888888888888 6677788877653
No 86
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=6.1e-05 Score=81.80 Aligned_cols=338 Identities=9% Similarity=-0.056 Sum_probs=208.1
Q ss_pred hcccCCHHHHHHHHHHHHhccC-CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----CCCH--HHHHHHHHHHH
Q 010320 166 AGRINNVDLAADLFAEAANKHL-KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI-----SPSI--VTYNTLISVFG 237 (513)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~-----~p~~--~~~~~li~~~~ 237 (513)
+...|+++.+..+++.+..... .+..........+...|++++|...+........- .+.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3445677777677666533211 13333344455566789999999999887642111 1111 12223334566
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHcC----CC-CCCHHHHHHHHHHHHh
Q 010320 238 RLLLVDHMEAAFQEIKDSNLSPNV----FTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PV-MPDTNTYLLLLRGYAH 308 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~t~~~ll~~~~~ 308 (513)
..|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.... |- .....++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 889999999999988763111222 34566666778899999999999887642 21 1123455666778889
Q ss_pred cCChHHHHHHHHHHHh----ccCC--C-cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---cccchHHHHHHHHH
Q 010320 309 SGNLPRMEKIYELVKH----HVDG--K-EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE---YRPWLNVLLIRVYA 378 (513)
Q Consensus 309 ~g~~~~a~~~~~~~~~----~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~li~~~~ 378 (513)
.|++++|...+++..+ .+.. + ....+..+...+...|+++.|.........+.... ........+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999999887654 2221 1 22334455666777899998876655443332211 11111223556777
Q ss_pred hcCCHHHHHHHHHHHHhcCC---CCchH-HHH-HHHHHHHHhcCcHHHHHHHHHHHHhcCCccc---HhhHHHHHHHHHh
Q 010320 379 KEDCLEEMEKSINDAFEHKT---SVTTV-RIM-RCIVSSYFRCNAVDKLANFVKRAESAGWRLC---RSLYHSKMVMYAS 450 (513)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~---~~~~~-~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~ 450 (513)
..|++++|.+.+.+...... ..... ... ...+..+...|+.+.|.+++........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 88999999999887754211 11100 001 1122444568899999999877543221111 1113456677889
Q ss_pred cCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCC
Q 010320 451 QRRVEEMESVLKEMENY----KIDC-SKKTFWIMYYAYATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 451 ~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 503 (513)
.|++++|..++++.... |... ...++..+..++.+.|+.++|.+.+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999887653 3222 23456677788999999999999998887654
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=7.1e-06 Score=77.82 Aligned_cols=218 Identities=13% Similarity=0.087 Sum_probs=161.4
Q ss_pred hcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhH
Q 010320 166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNTLISVFGRLLLVDH 244 (513)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~ 244 (513)
+.+.|++.+|.-.|+......+.+...|-.|.......++-..|+..+.+..+ +.| |....-.|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~---LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE---LDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh---cCCccHHHHHHHHHHHhhhhhHHH
Confidence 35788899999999988888777889999999999998888888888888875 345 45677788888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-----------HHHHHccCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCCh
Q 010320 245 MEAAFQEIKDSNLSPNVFTYNYLI-----------AGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNL 312 (513)
Q Consensus 245 A~~~~~~m~~~g~~p~~~~~~~li-----------~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~ 312 (513)
|.+.|+.=+...++ |..+. ..+.....+....++|-++.. .+..+|...+..|.-.|.-.|++
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 88888876543211 11111 111122234455666666543 45456677777777778888899
Q ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHH
Q 010320 313 PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIND 392 (513)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 392 (513)
+.|...|+..... .+.|..+||.|...+....+.++|..++....++.+.-+..+ |+ |.-+|...|.+++|.+.|-+
T Consensus 447 draiDcf~~AL~v-~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~R-yN-lgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQV-KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVR-YN-LGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhc-CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeee-hh-hhhhhhhhhhHHHHHHHHHH
Confidence 9999999888875 345788899999888888888888888888888877777777 43 77788888999988888766
Q ss_pred HH
Q 010320 393 AF 394 (513)
Q Consensus 393 ~~ 394 (513)
.+
T Consensus 524 AL 525 (579)
T KOG1125|consen 524 AL 525 (579)
T ss_pred HH
Confidence 44
No 88
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.69 E-value=0.00034 Score=67.60 Aligned_cols=336 Identities=12% Similarity=0.066 Sum_probs=222.6
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
..|-..+..+.+.|++......|+.....=+. ...+|...+...-..+-++-++.+++.-.+- ++..-+--|.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie 177 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIE 177 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHH
Confidence 46777778888999999999999987765332 5678999999888999999999999988852 4445788889
Q ss_pred HHHhcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHHccCHH---HHHHHHHHHHcCCCCCC--HHHHHHHH
Q 010320 235 VFGRLLLVDHMEAAFQEIKDSN------LSPNVFTYNYLIAGYMTAWMWG---KVEEIYQMMKAGPVMPD--TNTYLLLL 303 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~--~~t~~~ll 303 (513)
.+++.+++++|-+.+....... -+-+...|..+-+..++.-+.- .+..+++.+.. .-+| ...|++|.
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLA 255 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHH
Confidence 9999999999999998876421 2345667777777766654333 33444555443 2355 56889999
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHH-------------------HHHHHHHHhCCC--
Q 010320 304 RGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI-------------------KKIEALMRLIPE-- 362 (513)
Q Consensus 304 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a-------------------~~~~~~~~~~~~-- 362 (513)
+-|.+.|.++.|..+|++....-. ++.-|+.+.++|..-....-+ +-.+..++.+..
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 999999999999999998777532 444455566666532110000 000111111110
Q ss_pred -------------CCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CchHHHHHHHHHHHHhcCcHHHHHHH
Q 010320 363 -------------KEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS----VTTVRIMRCIVSSYFRCNAVDKLANF 425 (513)
Q Consensus 363 -------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~ 425 (513)
.++..| +=..-+..|+..+-...+.+.+..-.. -.....|..+...|-..|+++.|..+
T Consensus 334 ~~~lNsVlLRQn~~nV~eW----~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEW----HKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred chHHHHHHHhcCCccHHHH----HhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 011111 111112335566667777776653111 11244688899999999999999999
Q ss_pred HHHHHhcCCccc---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----------CC-------CCHHHHHHHHHHHHh
Q 010320 426 VKRAESAGWRLC---RSLYHSKMVMYASQRRVEEMESVLKEMENYK----------ID-------CSKKTFWIMYYAYAT 485 (513)
Q Consensus 426 ~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~~-------p~~~~~~~li~~~~~ 485 (513)
|++..+...+-- ..+|..-...=.++.+++.|+++.+.....- -. .+...|..+++.--.
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 999876554322 3344444455567888999999887665321 11 244567777787788
Q ss_pred cCCHhHHHHHHHHHHHCCCC
Q 010320 486 CGQRRKVNQVLGLMCKNGYD 505 (513)
Q Consensus 486 ~g~~~~A~~~~~~m~~~g~~ 505 (513)
.|-++....+++++.+..+-
T Consensus 490 ~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred hccHHHHHHHHHHHHHHhcC
Confidence 89999999999999887664
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=0.00051 Score=65.78 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=35.5
Q ss_pred cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
.+.+..++|+..++-... .+..+...-...+-+.|++++|+.+|+.+.+
T Consensus 90 Yrlnk~Dealk~~~~~~~---~~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDR---LDDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred HHcccHHHHHHHHhcccc---cchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 477888888888872222 1444566666778888999999999998865
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=9.4e-05 Score=64.53 Aligned_cols=193 Identities=11% Similarity=0.023 Sum_probs=109.8
Q ss_pred HHHHHHHHc--CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHH-HHHH
Q 010320 123 FVELMKQLG--SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNA-LLGA 199 (513)
Q Consensus 123 ~~~~l~~~~--~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-li~~ 199 (513)
+.+++..+- ++.+.|.+++....++ .+.+......|..+|-...++..|-+.++++-...+. ..-|.. -...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er----~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~-~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER----SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE-LEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc----CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH-HHHHHHHHHHH
Confidence 344444442 2455555555544332 2225566666666667777777777777776654332 111111 1244
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH
Q 010320 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF--GRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277 (513)
Q Consensus 200 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 277 (513)
+-+.+.+.+|+++...|.. .|+...-..-+.+. -..+++..+..++++.... -+..+.+.......+.|++
T Consensus 88 LY~A~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHhcccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccH
Confidence 5566677777777766642 13322222222222 2346666777777766532 2344444444555678888
Q ss_pred HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 010320 278 GKVEEIYQMMKA-GPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGK 329 (513)
Q Consensus 278 ~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 329 (513)
++|.+-|+...+ .|.+| ...|+..+- +.+.|+.+.|++...+++++|+..
T Consensus 161 EaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred HHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhc
Confidence 888888888776 45553 456666554 445678888888888888877754
No 91
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.58 E-value=2.1e-05 Score=70.26 Aligned_cols=187 Identities=14% Similarity=0.031 Sum_probs=111.9
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCH---hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHH
Q 010320 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI---GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTY 229 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~ 229 (513)
.....+-.+...+.+.|++++|...|+++....+.+. .++..+..++...|++++|+..|+++.+...-.|.. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3566777778888899999999999999887655432 567788888999999999999999998652111221 245
Q ss_pred HHHHHHHHhc--------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHH
Q 010320 230 NTLISVFGRL--------LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLL 301 (513)
Q Consensus 230 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 301 (513)
..+..++.+. |+.+.|.+.|+++...... +...+..+.... . .... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~-~---~~~~------~~--------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMD-Y---LRNR------LA--------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHH-H---HHHH------HH--------HHHHH
Confidence 5555555544 6788888888888865322 222222111100 0 0000 00 01123
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010320 302 LLRGYAHSGNLPRMEKIYELVKHHVD--GKEFPLIRAMICAYSKCSVTDRIKKIEALMRL 359 (513)
Q Consensus 302 ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 359 (513)
+...+.+.|++++|...++...+... +.....+..+..++.+.|+++++...++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44456666666666666666655421 12344556666666666666666655554443
No 92
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.57 E-value=0.00092 Score=64.70 Aligned_cols=222 Identities=8% Similarity=0.027 Sum_probs=125.9
Q ss_pred ccCHHHHHHHHHHHHcCCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc---HHHHHHHHHHHHhc
Q 010320 274 AWMWGKVEEIYQMMKAGPVMP------DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE---FPLIRAMICAYSKC 344 (513)
Q Consensus 274 ~g~~~~a~~~~~~m~~~g~~p------~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 344 (513)
.|+..+....|.+..+. +.| -...|..+.+.|-..|+++.|..+|++..+-..+-- ..+|..-..+-.+.
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh 438 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH 438 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence 45566666666666542 222 135677788888889999999999998877533221 33455555555555
Q ss_pred CChhHHHHHHHHHHhCCCCCc-------ccc---------hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010320 345 SVTDRIKKIEALMRLIPEKEY-------RPW---------LNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC 408 (513)
Q Consensus 345 g~~~~a~~~~~~~~~~~~~~~-------~~~---------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 408 (513)
.+++.|.++++-...++.+.. .|- +.+..++.--..|-++....+++.+++.....|.. ...
T Consensus 439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi--i~N 516 (835)
T KOG2047|consen 439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI--IIN 516 (835)
T ss_pred hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH--HHH
Confidence 555554444433333333211 010 01123333334466777777788887765544322 222
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCccc-HhhHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HH
Q 010320 409 IVSSYFRCNAVDKLANFVKRAESAGWRLC-RSLYHSKMVMYAS---QRRVEEMESVLKEMENYKIDCSKKTFWIMY--YA 482 (513)
Q Consensus 409 li~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--~~ 482 (513)
....+..+.-++++.+++++-...-.-|+ ...|+..+.-+.+ .-..+.|..+|++..+ |++|...-+-.|+ ..
T Consensus 517 yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 517 YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 22334456677888888876443332333 3557766665543 3467889999999887 6665433222222 22
Q ss_pred HHhcCCHhHHHHHHHHH
Q 010320 483 YATCGQRRKVNQVLGLM 499 (513)
Q Consensus 483 ~~~~g~~~~A~~~~~~m 499 (513)
--+.|....|++++++.
T Consensus 596 EEe~GLar~amsiyera 612 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 23457777888888774
No 93
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=0.00041 Score=66.41 Aligned_cols=56 Identities=9% Similarity=0.007 Sum_probs=39.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH--------HHHHCCCCCCC
Q 010320 453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLG--------LMCKNGYDVPV 508 (513)
Q Consensus 453 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~p~~ 508 (513)
....|.+++...-+..-.-.....-.++.....+|+++.|.+++. .+.+.+..|-.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~ 419 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT 419 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH
Confidence 467777777777654422224455567778899999999999999 66666665543
No 94
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.56 E-value=5.4e-05 Score=78.05 Aligned_cols=222 Identities=14% Similarity=0.081 Sum_probs=121.8
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-------
Q 010320 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS------- 225 (513)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~------- 225 (513)
+.+...+..|+..+...+++++|.++.+...+..+.....|-.+...+...++.+++.-+ .+... ...+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~ve 103 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAIVE 103 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhHHH
Confidence 346677788888888899999999998877666554555555555577777776666555 33321 1111
Q ss_pred ------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC
Q 010320 226 ------------IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293 (513)
Q Consensus 226 ------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 293 (513)
...+..+..+|-+.|+.++|..+++++.+... -|..+.|.+...|... ++++|.+++.+....
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--- 178 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--- 178 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence 13444455555555566666666666555542 2555555555555555 555555555554432
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHH
Q 010320 294 PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLL 373 (513)
Q Consensus 294 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 373 (513)
+...+++..+.++|.++..... .+...+-.+. +.+......+-...+.-.+
T Consensus 179 ------------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~----------------~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 179 ------------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIE----------------RKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred ------------HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHH----------------HHHHhhhccchhHHHHHHH
Confidence 3344455555555555554321 1222111111 1111111111111112246
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q 010320 374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF 414 (513)
Q Consensus 374 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 414 (513)
-..|-...+++++..+++.+++.. +.+.....-++.+|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHD--NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcC--CcchhhHHHHHHHHH
Confidence 677778888889999988888743 334444556666554
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=2.9e-05 Score=73.80 Aligned_cols=253 Identities=10% Similarity=0.013 Sum_probs=175.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHH
Q 010320 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPR 314 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 314 (513)
+.+.|++..|.-.|+..++..+. +...|-.|.......++-..|+..+++..+ +.|+ ....-.|.-.|...|.-.+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhhHHH
Confidence 56788899999999988876543 778899998888888888889999988887 4554 6777788888888888888
Q ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHH----HhcCChhHHHHHHHHHHhC---CCCCcccchHHHHHHHHHhcCCHHHHH
Q 010320 315 MEKIYELVKHHVDGKEFPLIRAMICAY----SKCSVTDRIKKIEALMRLI---PEKEYRPWLNVLLIRVYAKEDCLEEME 387 (513)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~ 387 (513)
|.+.++.-+....+ -...-.+-...- ...-+.+....+.+.|.++ ......+.+...|.-.|--.|++++|.
T Consensus 372 Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 98888876543211 000000000000 0000111122233333222 222345555656888888899999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHH--
Q 010320 388 KSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME-- 465 (513)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 465 (513)
+.|+..+. ..|.+..+||.|...++...+.++|+.-|.++.+....--..-|| |.-.|...|.+++|.+.|-+..
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN-LGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh-hhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999988 668899999999999999999999999999998755433334455 5558899999999999886544
Q ss_pred -hCC------CCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 010320 466 -NYK------IDCSKKTFWIMYYAYATCGQRRKVNQV 495 (513)
Q Consensus 466 -~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~ 495 (513)
+++ ..++...|..|=.++.-.++.|.+.+.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 331 123456788887888888887755544
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.55 E-value=0.00055 Score=61.12 Aligned_cols=201 Identities=9% Similarity=-0.062 Sum_probs=123.8
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 010320 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN-TLI 233 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~-~li 233 (513)
++.-.--+-..+...|++..|+.-|....+.++.+-.++-.-...|...|+...|+.=|....+ ++||-..-. --.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhc
Confidence 3334445667777889999999999998886443444444445678888999999998988885 478864332 234
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCC------------HHHH--HHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHH
Q 010320 234 SVFGRLLLVDHMEAAFQEIKDSNLSPN------------VFTY--NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY 299 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~------------~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 299 (513)
..+.+.|.+++|..=|+.+++....-+ ...| ...+..+...|+...|+.....+++-. ..|...|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 567889999999999999987643111 1111 122333445566667777666666632 2355566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010320 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI 360 (513)
Q Consensus 300 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 360 (513)
..-..+|...|++..|+.-++...+... .+....-.+-..+.+.|+.+.....++...++
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 6666667777777666665555554322 23333444555566666555444444433333
No 97
>PLN02789 farnesyltranstransferase
Probab=98.55 E-value=0.00019 Score=66.40 Aligned_cols=132 Identities=11% Similarity=0.007 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccC-CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCh--HHH
Q 010320 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRIN-NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLS--DKC 209 (513)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~--~~A 209 (513)
..+.|+.+.+.+.+.. +-+..+|+..-.++.+.| .++++++.++++.+.++++..+|+.-...+.+.|+. +++
T Consensus 52 ~serAL~lt~~aI~ln----P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 52 RSPRALDLTADVIRLN----PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCHHHHHHHHHHHHHC----chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 4444555555444421 123333333333333334 345555555555554444444454443333333331 344
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010320 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271 (513)
Q Consensus 210 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 271 (513)
+++++++.+. -+-|..+|+...-++.+.|+++++++.++++++.++. |..+|+.....+
T Consensus 128 l~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl 186 (320)
T PLN02789 128 LEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVI 186 (320)
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHH
Confidence 4445444432 1233444544444444445555555555555544332 444444444433
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.54 E-value=0.00047 Score=74.93 Aligned_cols=302 Identities=8% Similarity=-0.016 Sum_probs=181.6
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC------CCCH--HHHHHHHHH
Q 010320 199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL------SPNV--FTYNYLIAG 270 (513)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~--~~~~~li~~ 270 (513)
.....|+++.+.+.++.+... ....+..........+...|++++|..++++..+.-- .+.. .....+-..
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 344567777777776665321 1111222223444555678999999999988754210 1111 122223345
Q ss_pred HHHccCHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhccC---CC--cHHHHHHHHHHH
Q 010320 271 YMTAWMWGKVEEIYQMMKAGPVMPD----TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD---GK--EFPLIRAMICAY 341 (513)
Q Consensus 271 ~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~li~~~ 341 (513)
+...|++++|...+++....--..+ ....+.+...+...|++++|...+++...... .+ ....+..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 5679999999999998765311112 23445666777889999999999988764211 11 123445566678
Q ss_pred HhcCChhHHHHHHHHHHhCCC----CCcc--cchHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCchHHHHHHHHHH
Q 010320 342 SKCSVTDRIKKIEALMRLIPE----KEYR--PWLNVLLIRVYAKEDCLEEMEKSINDAFEHK---TSVTTVRIMRCIVSS 412 (513)
Q Consensus 342 ~~~g~~~~a~~~~~~~~~~~~----~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~li~~ 412 (513)
...|+++.|....+....... .... ......+...+...|++++|...+.+..... ........+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 889999988776544333211 1111 1112234556677799999999988765521 111123345556677
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCcc-cHhhH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 010320 413 YFRCNAVDKLANFVKRAESAGWRL-CRSLY-----HSKMVMYASQRRVEEMESVLKEMENYKIDCS---KKTFWIMYYAY 483 (513)
Q Consensus 413 ~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~ 483 (513)
+...|+.+.|.+.+..+....... ....+ ...+..+...|+.+.|..++........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 888999999999998875421110 01111 1122445568999999999877654321111 11245677888
Q ss_pred HhcCCHhHHHHHHHHHHH
Q 010320 484 ATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 484 ~~~g~~~~A~~~~~~m~~ 501 (513)
...|++++|...+++...
T Consensus 702 ~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 702 ILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999988754
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.54 E-value=9e-05 Score=77.42 Aligned_cols=227 Identities=12% Similarity=0.127 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHcC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHH
Q 010320 261 VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG-PVMP---DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRA 336 (513)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (513)
...|-..|....+.++.++|.+++++.+.. +++- -...|.++++.-..-|.-+...++|++..+.. ....+|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 345555566666666666666666665442 1110 12344555555555555555666666655532 12334556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q 010320 337 MICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC 416 (513)
Q Consensus 337 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 416 (513)
|...|.+.+..++|.+.++.+-+-.......|+ ..+..+.+.++-+.|..++++.++.-............+..-.+.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~--~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWI--MYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHH--HHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 666666666666666655555443334444453 466666666666777777776665322222444455556666778
Q ss_pred CcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHhHH
Q 010320 417 NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSK--KTFWIMYYAYATCGQRRKV 492 (513)
Q Consensus 417 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A 492 (513)
|+.+.+..+|+.....-.+ -...|+.+|+.-.++|+.+.+..+|++....++.|-. ..|...+..--+.|+-+.+
T Consensus 1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 8888888888877654422 4567888888888888888888888888888776543 3455555555555664443
No 100
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=0.00051 Score=61.54 Aligned_cols=338 Identities=8% Similarity=0.087 Sum_probs=198.6
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH-
Q 010320 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI- 233 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li- 233 (513)
++-....+++...+.++-++-..+-+.+.. ..+---+|....-..-.+++|+++|...... .|+-...|.-+
T Consensus 120 ~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~ey~alNVy~A 192 (557)
T KOG3785|consen 120 TPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPEYIALNVYMA 192 (557)
T ss_pred ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---ChhhhhhHHHHH
Confidence 455555666777778877776666665544 2233344444444445788999999988865 46666666544
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--ccCHHHHH--H----------HHHHHHcCC--------
Q 010320 234 SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT--AWMWGKVE--E----------IYQMMKAGP-------- 291 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~~~~a~--~----------~~~~m~~~g-------- 291 (513)
-+|.+..-++-+.++++--... +.-++..-|.......+ .|+..+.+ + ..+.+.+++
T Consensus 193 LCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngE 271 (557)
T KOG3785|consen 193 LCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGE 271 (557)
T ss_pred HHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCc
Confidence 4556777777777877766643 22234444544443333 22221111 0 111121111
Q ss_pred ----CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHH-HHh-cCChhHHHHHHHHHHhC
Q 010320 292 ----VMPD-----TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICA-YSK-CSVTDRIKKIEALMRLI 360 (513)
Q Consensus 292 ----~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~-~g~~~~a~~~~~~~~~~ 360 (513)
+-|. +..-..|+--|.+.+++.+|..+.+++.- ..|.......++.+ +++ .|.-+...-+.+.|.-.
T Consensus 272 gALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV 349 (557)
T KOG3785|consen 272 GALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV 349 (557)
T ss_pred cHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh
Confidence 1111 12233455567889999999888776542 12333333333332 222 23333333344444443
Q ss_pred CCC----CcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Q 010320 361 PEK----EYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL 436 (513)
Q Consensus 361 ~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p 436 (513)
.+. +..|. ...+..++.-..++++.+-.++.+..- ...++...| .+.++++..|++.+|+++|-++....++
T Consensus 350 G~Sa~ecDTIpG-RQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik- 425 (557)
T KOG3785|consen 350 GESALECDTIPG-RQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK- 425 (557)
T ss_pred cccccccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-
Confidence 333 23333 235777777788889988877766542 223333334 4788999999999999999988766655
Q ss_pred cHhhH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCC
Q 010320 437 CRSLY-HSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW-IMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAF 511 (513)
Q Consensus 437 ~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 511 (513)
|..+| ..|.++|.+++..+.|..++-.+... -+..+.- .+..-|-+++.+--|.+.|+.+... .|+.+.|
T Consensus 426 n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 426 NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 44555 56678899999999998887666532 2333333 4457788899988888999888755 4555544
No 101
>PLN02789 farnesyltranstransferase
Probab=98.51 E-value=0.00031 Score=64.97 Aligned_cols=146 Identities=8% Similarity=-0.090 Sum_probs=81.9
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010320 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVF 236 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~ 236 (513)
++..+-..+...++.++|+.+.+++.+..+.+..+|+.--.++...| +++++++.++++.+. -+-+..+|+...-.+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHH
Confidence 34444445555666677777777766665555556665555555555 456667766666653 233444555444444
Q ss_pred HhcCCh--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 010320 237 GRLLLV--DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA 307 (513)
Q Consensus 237 ~~~g~~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 307 (513)
.+.|.. +.+..+++++.+... -|..+|+....++.+.|+++++++.++++++.+.. |...|+.....+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~ 187 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVIT 187 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHH
Confidence 444442 455666666665443 25666666666666666666666666666664433 3444544444433
No 102
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.00074 Score=68.61 Aligned_cols=243 Identities=13% Similarity=0.150 Sum_probs=129.1
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHH
Q 010320 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKV 280 (513)
Q Consensus 201 ~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 280 (513)
..++-+++|..+|++.. .+....+.||.- .+.++.|.++-++.. ...+|..+..+-.+.|.+.+|
T Consensus 1059 i~~~LyEEAF~ifkkf~------~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKKFD------MNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred hhhhHHHHHHHHHHHhc------ccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 33444555655555432 234444444433 244555555544432 345677788887788877777
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010320 281 EEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI 360 (513)
Q Consensus 281 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 360 (513)
++-|-+. -|...|..+++.+.+.|.+++-.+++....+....|.+. +.||-+|++.+++.+.++. +.
T Consensus 1124 ieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f---i~-- 1190 (1666)
T KOG0985|consen 1124 IESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF---IA-- 1190 (1666)
T ss_pred HHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH---hc--
Confidence 7665332 256678888888888888888888887777766666554 4678888887755543322 11
Q ss_pred CCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH-----------
Q 010320 361 PEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA----------- 429 (513)
Q Consensus 361 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----------- 429 (513)
.++.... . .+.+-|...+.++.|.-+|... .-|..|...+...|++..|.+--++.
T Consensus 1191 -gpN~A~i-~-~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vcf 1257 (1666)
T KOG0985|consen 1191 -GPNVANI-Q-QVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCF 1257 (1666)
T ss_pred -CCCchhH-H-HHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Confidence 1111110 1 2444455555555555444321 11333344444444444433322221
Q ss_pred -----------HhcC--CcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010320 430 -----------ESAG--WRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485 (513)
Q Consensus 430 -----------~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 485 (513)
.-.| +-....-..-++..|-..|-+++-+.+++.-.... +.....|+-|.-.|.+
T Consensus 1258 aCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1258 ACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHh
Confidence 1112 22233335566667777777777777666554322 2334455555555554
No 103
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=0.0013 Score=65.43 Aligned_cols=143 Identities=14% Similarity=0.063 Sum_probs=82.3
Q ss_pred HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHH----------HHHhC--------CCCC
Q 010320 163 IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRD----------LKKEA--------NISP 224 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----------m~~~~--------g~~p 224 (513)
=+.|-..|.+++|.++-+.--+-. =..||..-..-+-..++.+.|++.|++ |..++ .-..
T Consensus 833 NKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~ 910 (1416)
T KOG3617|consen 833 NKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKR 910 (1416)
T ss_pred HHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhcc
Confidence 334445555555555544322211 123555555555566777777777763 22210 0122
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010320 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304 (513)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 304 (513)
|...|.-....+-..|+++.|+.+|+..++ |-+++...|-.|+.++|-++-++- -|...+..|.+
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR 975 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLAR 975 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHH
Confidence 334445555555667778888877777654 445555566666777766665442 25666677777
Q ss_pred HHHhcCChHHHHHHHHHH
Q 010320 305 GYAHSGNLPRMEKIYELV 322 (513)
Q Consensus 305 ~~~~~g~~~~a~~~~~~~ 322 (513)
.|-..|++.+|..+|.+.
T Consensus 976 ~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HhhhhHHHHHHHHHHHHH
Confidence 777777777777777554
No 104
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.50 E-value=0.00016 Score=70.64 Aligned_cols=166 Identities=8% Similarity=0.026 Sum_probs=81.4
Q ss_pred HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHH
Q 010320 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEM 386 (513)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 386 (513)
.....+..|+.+++.+..+.. -...|..+.+.|...|+++.|++.+-.- +. +.-.|..|.+.|+|+.|
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~------~~----~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA------DL----FKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc------ch----hHHHHHHHhccccHHHH
Confidence 344455555555555544321 1223445555555555555544433211 11 11245555566666655
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320 387 EKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
.++-.+... .. .....|-+-..-.-.+|++.+|.+++-.+. .|+ .-|.+|-+.|..++.+++.++-..
T Consensus 811 ~kla~e~~~--~e-~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 811 FKLAEECHG--PE-ATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHhcC--ch-hHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 555433221 11 122334333344444555555555443221 122 235566666666666666655432
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010320 467 YKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 467 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
.- -..|...+..-|...|+.+.|.+-|-+.
T Consensus 879 d~---l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 879 DH---LHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hh---hhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 21 1245666777788888888888766543
No 105
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=0.0011 Score=67.53 Aligned_cols=240 Identities=11% Similarity=0.087 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010320 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306 (513)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 306 (513)
..|..+..+-.+.|.+.+|++-|=+. -|...|..++....+.|.|++-.+.+....++.-.|.+. +.||-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 34555555555555555555544322 244455555555555555555555555444444334332 2455555
Q ss_pred HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHh---------------------CCCCCc
Q 010320 307 AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRL---------------------IPEKEY 365 (513)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------------------~~~~~~ 365 (513)
++.+++.+.++++ ..|+......+.+-|...|.++.|.-.+..... -...+.
T Consensus 1177 Akt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred HHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 5555554443332 123333333333334444433333222221110 011223
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-ccHhhHHHH
Q 010320 366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR-LCRSLYHSK 444 (513)
Q Consensus 366 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l 444 (513)
..|. .+-.+|...+.+..|. |....... ...-+.-++.-|...|-+++.+.+++... |+. .....|+-|
T Consensus 1250 ktWK--~VcfaCvd~~EFrlAQ-----iCGL~iiv-hadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTEL 1319 (1666)
T KOG0985|consen 1250 KTWK--EVCFACVDKEEFRLAQ-----ICGLNIIV-HADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTEL 1319 (1666)
T ss_pred hHHH--HHHHHHhchhhhhHHH-----hcCceEEE-ehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHH
Confidence 3332 2333333333333221 22111111 12224556777777777777776666433 221 123345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010320 445 MVMYASQRRVEEMESVLKEME-NYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 445 i~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
.-.|++- ++++..+-++-.- +.++ --+++++-++.-|.+..-++.+-
T Consensus 1320 aiLYsky-kp~km~EHl~LFwsRvNi-------pKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1320 AILYSKY-KPEKMMEHLKLFWSRVNI-------PKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhcch-------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 5556543 2343333333222 1122 25889999999998887777653
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=1.2e-05 Score=78.26 Aligned_cols=214 Identities=13% Similarity=0.118 Sum_probs=113.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010320 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309 (513)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 309 (513)
..+...+...|-...|..+|+++. .|.-+|.+|+..|+..+|..+..+-.+ -.||...|..+.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 445555556666666666666543 255566666666666666666655555 245666666665555444
Q ss_pred CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHH
Q 010320 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKS 389 (513)
Q Consensus 310 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 389 (513)
.-++.|.++.+..... .-..+.......++++.+.+-++.--++..-....|. .+..+..+.++++.|.+.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf--~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWF--GLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHH--hccHHHHHHhhhHHHHHH
Confidence 4455555555443221 0011111122244455544444444444444444442 244455555666666666
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320 390 INDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
|..-.. ..|.+...||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+....+.|.+++|++.+.++..
T Consensus 542 F~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 542 FHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 655444 34445555666666666666666666666666655522 344455555555666666666666665543
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.49 E-value=0.00014 Score=76.07 Aligned_cols=132 Identities=6% Similarity=0.019 Sum_probs=53.9
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 010320 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS---IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 265 (513)
+...|-.-|......++.++|.+++++....-++.-. ...|.++++.-...|.-+...++|++..+.. -...+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3344444444444444444444444444432111000 1133333333333344444444444444321 1123344
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010320 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
.|...|.+.+.+++|.++++.|.++ +.-....|...+..+.+.++-+.|..++.+..
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4444444444444444444444432 11233344444444444444444444444433
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=3.1e-05 Score=75.59 Aligned_cols=240 Identities=11% Similarity=0.048 Sum_probs=172.5
Q ss_pred CCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 010320 151 GTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230 (513)
Q Consensus 151 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~ 230 (513)
+++|--..-..+...+.+.|-...|..+|+++ +.|.-.|.+|+..|+.++|.++..+..++ +||..-|.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc 461 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYC 461 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHH
Confidence 35555555667888889999999999999975 46788899999999999999999888764 79999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010320 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 310 (513)
.+.+......-+++|.++++..-.+ .-..+.....+.++++++.+.|+.-.+.. ..-..+|-..-.+..+.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHh
Confidence 9999998888899999999876542 11111222233688999999888755522 123567888888888899
Q ss_pred ChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHH
Q 010320 311 NLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSI 390 (513)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 390 (513)
+++.|.+.|...... -+.+...||.+-.+|.+.|+-.++...++...+..-.+...|.| .+....+.|.+++|.+.+
T Consensus 534 k~q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWEN--ymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWEN--YMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hhHHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeec--hhhhhhhcccHHHHHHHH
Confidence 999999999888774 34467789999999999986665555544444444344444443 344557889999999998
Q ss_pred HHHHhcCCCCchHHHHHHHHHH
Q 010320 391 NDAFEHKTSVTTVRIMRCIVSS 412 (513)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~li~~ 412 (513)
.++..-.....+..+...++..
T Consensus 611 ~rll~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 611 HRLLDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HHHHHhhhhcccchhhHHHHHH
Confidence 8877643322233334444433
No 109
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.44 E-value=5e-05 Score=75.01 Aligned_cols=150 Identities=13% Similarity=0.125 Sum_probs=108.3
Q ss_pred CHHHHHHHHH--HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------CC
Q 010320 155 TKEEYTKGIK--FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANI--------SP 224 (513)
Q Consensus 155 ~~~~~~~ll~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~--------~p 224 (513)
|..+-..+++ .|...|+.|.|.+-.+.++ +..+|..|.+.|++.++.|-|.-.+..|..-.|. .|
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 6666666765 4788999999998888775 4579999999999999999888887777542221 22
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010320 225 SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304 (513)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 304 (513)
+ .+=.-+.-.....|.+++|+.+|.+-+. |..|=..|-..|.+++|.++-+.=-+-. =..||..-..
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~ 866 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAK 866 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHH
Confidence 2 2222233334677999999999999875 4556667778899999998876533322 2356666677
Q ss_pred HHHhcCChHHHHHHHHHH
Q 010320 305 GYAHSGNLPRMEKIYELV 322 (513)
Q Consensus 305 ~~~~~g~~~~a~~~~~~~ 322 (513)
-+-..++.+.|++.|++.
T Consensus 867 ~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHhhccHHHHHHHHHhc
Confidence 777788899999888764
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.43 E-value=5.4e-05 Score=67.68 Aligned_cols=185 Identities=10% Similarity=-0.106 Sum_probs=124.7
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--H
Q 010320 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS-I---VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV--F 262 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~ 262 (513)
....+..+...+...|++++|...|+++... .|+ . .++..+..++.+.|++++|+..++++.+....... .
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR---YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 5677888888999999999999999999864 343 2 46778889999999999999999999875432111 2
Q ss_pred HHHHHHHHHHHc--------cCHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHH
Q 010320 263 TYNYLIAGYMTA--------WMWGKVEEIYQMMKAGPVMPDT-NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPL 333 (513)
Q Consensus 263 ~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 333 (513)
++..+..++.+. |++++|.+.|+.+... .|+. ..+..+..... ... ... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~~--------~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HHH--------HH
Confidence 444455555544 7788999999998774 3442 22222211110 000 000 11
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010320 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKE-YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396 (513)
Q Consensus 334 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 396 (513)
...+...|.+.|+++.|...++.+....+.+ ..+.....+..++...|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1245667889999998888776665543332 22222336899999999999999999887664
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.41 E-value=2.7e-05 Score=66.94 Aligned_cols=120 Identities=9% Similarity=0.068 Sum_probs=91.3
Q ss_pred ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--hhH
Q 010320 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVF-GRLLL--VDH 244 (513)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~-~~~g~--~~~ 244 (513)
..++.+++...++...+..+.+...|..+...|...|++++|...|++..+. .+-|...+..+..++ ...|+ .++
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 3666777777888877777778888888888888888888888888888763 233566777777653 56666 488
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010320 245 MEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 245 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
|.+++++..+.+.. +..++..+...+.+.|++++|+..|+++.+.
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888888876543 6777888888888888888888888888764
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.41 E-value=8.8e-05 Score=63.78 Aligned_cols=162 Identities=14% Similarity=0.024 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
|... ..+-..+.-.|+-+....+..........+....+..+....+.|++.+|...|.+... .-++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHH
Confidence 4444 55556666667777777777665554444666777777778888888888888887774 45677778888888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHH
Q 010320 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPR 314 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 314 (513)
+|-+.|+.+.|..-|.+..+.-. -+...+|.|.-.+.-.|+.+.|..++......+. -|...-..+.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHH
Confidence 88888888888887777776433 2445566666666677788888888777766542 256666677777777788887
Q ss_pred HHHHHHH
Q 010320 315 MEKIYEL 321 (513)
Q Consensus 315 a~~~~~~ 321 (513)
|..+...
T Consensus 221 A~~i~~~ 227 (257)
T COG5010 221 AEDIAVQ 227 (257)
T ss_pred HHhhccc
Confidence 7776644
No 113
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=0.00018 Score=62.88 Aligned_cols=292 Identities=13% Similarity=0.109 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHH
Q 010320 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL-IAG 270 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~ 270 (513)
-+++.+..+.+..++++|++++..-.++ -+.+......|..+|-...++..|-..++++-.. .|...-|... ...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 3566677777777777777777766553 1226666777777777777777777777777653 3444444332 234
Q ss_pred HHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChh
Q 010320 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY--AHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTD 348 (513)
Q Consensus 271 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 348 (513)
+-+.+.+..|+.+...|... ++...-..-+.+. ...+++-.+..+.++....| +..+.+.......+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 45667777777777776652 2322222222222 23556666666665544321 3333334444455666666
Q ss_pred HHHHHHHHHHhCCCCCcccch-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHH-------------------HHH
Q 010320 349 RIKKIEALMRLIPEKEYRPWL-NVLLIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVR-------------------IMR 407 (513)
Q Consensus 349 ~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~-------------------~~~ 407 (513)
.|.+-++...+. .+..+.. | .+.-+..+.|+++.|++...+++++|.... ... .-+
T Consensus 162 aAvqkFqaAlqv--sGyqpllAY-niALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 162 AAVQKFQAALQV--SGYQPLLAY-NLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHhh--cCCCchhHH-HHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 444333322222 2333321 2 244455566677777777776666653321 000 001
Q ss_pred HHHH-------HHHhcCcHHHHHHHHHHHH-hcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010320 408 CIVS-------SYFRCNAVDKLANFVKRAE-SAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIM 479 (513)
Q Consensus 408 ~li~-------~~~~~~~~~~a~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 479 (513)
.++. .+.+.|+++.|.+-+..|- +.....|+.|...+.-. -..+++-+..+-+.-+.+.+ +....||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHH
Confidence 1221 2334566666666666552 11122334443222111 11223333333333333333 3456789999
Q ss_pred HHHHHhcCCHhHHHHHHHH
Q 010320 480 YYAYATCGQRRKVNQVLGL 498 (513)
Q Consensus 480 i~~~~~~g~~~~A~~~~~~ 498 (513)
+-.||++.-++.|..++-+
T Consensus 317 LllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHhhhHHHhHHHHHHhh
Confidence 9999999988888877643
No 114
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=0.0011 Score=62.89 Aligned_cols=359 Identities=10% Similarity=-0.026 Sum_probs=208.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320 131 GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 131 ~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
.++.+.|...|....... +++...|..-..+|++.|++++|++=-.+-.+..+.=...|+....++.-.|++++|+
T Consensus 15 ~~d~~~ai~~~t~ai~l~----p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLS----PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccHHHHHHHHHHHHccC----CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 468888998888776643 5588889999999999999999987776666655444678999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHc----------
Q 010320 211 SLFRDLKKEANISPSIVTYNTLISVFGRL---LLVDHMEAAFQEIKDSN---LSPNVFTYNYLIAGYMTA---------- 274 (513)
Q Consensus 211 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~---------- 274 (513)
.-|.+-.+. .+-|...++-+..++... ++.-.--.++..+...- .......|..++..+-+.
T Consensus 91 ~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 91 LAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 999988764 344566777777777211 00000001111111100 000112233333322111
Q ss_pred cCHHHHHHHHHH-----HHcCC-------CCC------------C----------HHHHHHHHHHHHhcCChHHHHHHHH
Q 010320 275 WMWGKVEEIYQM-----MKAGP-------VMP------------D----------TNTYLLLLRGYAHSGNLPRMEKIYE 320 (513)
Q Consensus 275 g~~~~a~~~~~~-----m~~~g-------~~p------------~----------~~t~~~ll~~~~~~g~~~~a~~~~~ 320 (513)
.++..+...+.. +...| ..| | ..-...+.++..+..+++.|.+-++
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 111111111110 00011 111 1 1234567777778888888888888
Q ss_pred HHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc--------cchHHHHHHHHHhcCCHHHHHHHHHH
Q 010320 321 LVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR--------PWLNVLLIRVYAKEDCLEEMEKSIND 392 (513)
Q Consensus 321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~a~~~~~~ 392 (513)
...+.. .+..-++..-.+|...|.+...... ...-.+.+-. ......+..+|.+.++++.++..|.+
T Consensus 249 ~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~---c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 249 KALELA--TDITYLNNIAAVYLERGKYAECIEL---CEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHhHh--hhhHHHHHHHHHHHhccHHHHhhcc---hHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 887764 4555566666677777655432221 1111111111 11111244466677788888888877
Q ss_pred HHhcCCCCchHH------------------------HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHH
Q 010320 393 AFEHKTSVTTVR------------------------IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMY 448 (513)
Q Consensus 393 ~~~~~~~~~~~~------------------------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 448 (513)
.+.....+.... -...=.+.+.+.|++..|...|.++++.. +-|...|....-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 655332221110 01112345666788888888888877666 33677777777788
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
.+.|.+..|+.=.+...+.+ ++....|..=..++....+|+.|++.|++-++.
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888888877777766664 444555555555666666777777777766554
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.38 E-value=0.00045 Score=71.47 Aligned_cols=237 Identities=12% Similarity=0.127 Sum_probs=149.9
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010320 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV-TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 267 (513)
+...|..|+..+...+++++|.++.+..... .|+.. .|-.+...+.+.++.+++..+ .+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 7889999999999999999999999977754 45543 344444466666665555444 23
Q ss_pred HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010320 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
+.......++.-+..+...|...+ -+...+..+..+|-+.|+.+++..+|+++.+.. +.|..+.|.+...|... ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 333344445545555555565532 345578888889999999999999999998876 56788888888888888 77
Q ss_pred hHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHH
Q 010320 348 DRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427 (513)
Q Consensus 348 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 427 (513)
++|.+... -.+..+...+++..+.++|.++.... +.+...+-.+ .+
T Consensus 166 ~KA~~m~~----------------KAV~~~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i----------------~~ 211 (906)
T PRK14720 166 EKAITYLK----------------KAIYRFIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRI----------------ER 211 (906)
T ss_pred HHHHHHHH----------------HHHHHHHhhhcchHHHHHHHHHHhcC--cccchHHHHH----------------HH
Confidence 77666533 23444666678888888887777632 2222222222 22
Q ss_pred HHHhc-CCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320 428 RAESA-GWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484 (513)
Q Consensus 428 ~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (513)
.+... |..--..++-.+-..|-..++++++..+++.+.+.. +-|.....-++.+|.
T Consensus 212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 22111 222223344445555666666677777776666654 234444555555554
No 116
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.37 E-value=7.4e-07 Score=52.47 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCC
Q 010320 475 TFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPV 508 (513)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 508 (513)
+|+++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 5777777777777777777777777777777763
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=0.0017 Score=61.06 Aligned_cols=235 Identities=12% Similarity=-0.007 Sum_probs=152.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCChHH
Q 010320 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL---KTIGTYNALLGAYMYNGLSDK 208 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~li~~~~~~g~~~~ 208 (513)
.+++.-.++|+.+......|-.|... ++.-=.-..++..+.+.-++++..+. ++...+...+.+......-..
T Consensus 217 ydp~gM~~ff~rl~~~~~~~~~~p~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~ 292 (484)
T COG4783 217 YDPQGMPEFFERLADQLRYGGQPPEY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQ 292 (484)
T ss_pred CCchhHHHHHHHHHHHHhcCCCCChH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccc
Confidence 35555556666655422222223322 11111223455666666666655433 245556666665544443333
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010320 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 209 A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 288 (513)
+-.++.+-.+. .-...-|..-+. +...|+.+.|+..++.+..... -|..-+......+.+.++.++|.+.++.+.
T Consensus 293 ~~~~~~~~~~~---~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal 367 (484)
T COG4783 293 AADLLAKRSKR---GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKAL 367 (484)
T ss_pred hHHHHHHHhCc---cchHHHHHHHHH-HHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 33333332221 123334444443 4467889999999999887532 355666666788999999999999999998
Q ss_pred cCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCccc
Q 010320 289 AGPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367 (513)
Q Consensus 289 ~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 367 (513)
. ..|+ ......+..++.+.|++.+|..+++..... .+.|...|..|..+|...|+..++..+
T Consensus 368 ~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A-------------- 430 (484)
T COG4783 368 A--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLA-------------- 430 (484)
T ss_pred h--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHH--------------
Confidence 8 4576 666777888999999999999999888776 456888999999999999987766553
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010320 368 WLNVLLIRVYAKEDCLEEMEKSINDAFEHK 397 (513)
Q Consensus 368 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 397 (513)
....|...|+++.|+..+....+..
T Consensus 431 -----~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 431 -----RAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred -----HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 4566778899999998887776643
No 118
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.36 E-value=7.2e-07 Score=52.52 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC
Q 010320 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295 (513)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 295 (513)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566777777777777777777777776666665
No 119
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=0.0028 Score=60.28 Aligned_cols=92 Identities=11% Similarity=0.054 Sum_probs=70.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCC
Q 010320 374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453 (513)
Q Consensus 374 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 453 (513)
...+.+.|++..|...|.+++... |.+...|....-+|.+.|.+..|+.=-+...+.. ++....|.-=..++....+
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHH
Confidence 456677899999999999999854 7789999999999999999999988777666553 1223334433445555678
Q ss_pred HHHHHHHHHHHHhCC
Q 010320 454 VEEMESVLKEMENYK 468 (513)
Q Consensus 454 ~~~A~~~~~~m~~~~ 468 (513)
++.|.+.|++-.+.+
T Consensus 442 ydkAleay~eale~d 456 (539)
T KOG0548|consen 442 YDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHhcC
Confidence 899999999988776
No 120
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.33 E-value=0.00054 Score=67.17 Aligned_cols=139 Identities=16% Similarity=0.221 Sum_probs=98.5
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010320 161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 240 (513)
..+.+..+...|.+|+.+++.+..+... ..-|..+..-|+..|+++.|.++|.+.- .++-.|..|.+.|
T Consensus 737 kaieaai~akew~kai~ildniqdqk~~-s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKTA-SGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhccc-cccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccc
Confidence 3455667888999999999988876432 3357788888999999999999986542 3456788899999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010320 241 LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYE 320 (513)
Q Consensus 241 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 320 (513)
+|++|.++-++.. |.+.....|-.-..-+-+.|++.+|+++|-.+.. |+. .|..|-+.|..++.+++.+
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHH
Confidence 9999998877764 4455566676666667778888888877644322 432 3455666666666655554
Q ss_pred H
Q 010320 321 L 321 (513)
Q Consensus 321 ~ 321 (513)
+
T Consensus 875 k 875 (1636)
T KOG3616|consen 875 K 875 (1636)
T ss_pred H
Confidence 3
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.33 E-value=0.00034 Score=71.48 Aligned_cols=183 Identities=7% Similarity=-0.059 Sum_probs=138.8
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010320 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~ 231 (513)
.+.+...+-.|..+..+.|+.++|..+++...+..+.+......+...+.+.+++++|+..+++.... -+-+....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 45578999999999999999999999999999987778899999999999999999999999999864 3445567788
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010320 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 311 (513)
+..++.+.|++++|+.+|++....+. -+..++..+..++-+.|+.++|...|+...+. ..+....|+..+.-
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~------ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLVD------ 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHHH------
Confidence 88999999999999999999997432 24788888999999999999999999998763 13445566655433
Q ss_pred hHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHhc
Q 010320 312 LPRMEKIYELVKHHV----DGKEFPLIRAMICAYSKC 344 (513)
Q Consensus 312 ~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~ 344 (513)
+..-..+++++.-.+ .+....+...+|..|.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 233344555544332 222333445555555543
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.32 E-value=0.00022 Score=61.39 Aligned_cols=158 Identities=9% Similarity=-0.006 Sum_probs=126.2
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010320 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
+..+ ..+-..+...|+-+....+...... ...-|....+..+....+.|++..|...|.+..... .+|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 5555 5566777888999999888888664 335566677779999999999999999999998654 46899999999
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010320 269 AGYMTAWMWGKVEEIYQMMKAGPVMP-DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
-+|.+.|++++|..-|.+..+ +.| +...++.|.-.+.-.|+.+.|..++......+. -|..+-..+.......|++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCCh
Confidence 999999999999999999887 333 467788888888999999999999988877643 3556666677777777877
Q ss_pred hHHHHH
Q 010320 348 DRIKKI 353 (513)
Q Consensus 348 ~~a~~~ 353 (513)
+.|+.+
T Consensus 219 ~~A~~i 224 (257)
T COG5010 219 REAEDI 224 (257)
T ss_pred HHHHhh
Confidence 766554
No 123
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.31 E-value=1.3e-06 Score=51.03 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCC
Q 010320 474 KTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDV 506 (513)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 506 (513)
.+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 124
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.29 E-value=1e-06 Score=51.44 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC
Q 010320 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294 (513)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 294 (513)
+||.+|.+|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.28 E-value=6.9e-05 Score=60.81 Aligned_cols=90 Identities=11% Similarity=-0.177 Sum_probs=37.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010320 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276 (513)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 276 (513)
...+...|++++|...|+..... -+.+...|..+..++.+.|++++|+..|++..+... .+...+..+..++.+.|+
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCC
Confidence 33444444444444444444421 122333444444444444444444444444443322 233444444444444444
Q ss_pred HHHHHHHHHHHHc
Q 010320 277 WGKVEEIYQMMKA 289 (513)
Q Consensus 277 ~~~a~~~~~~m~~ 289 (513)
+++|+..|+...+
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.28 E-value=4.2e-05 Score=65.71 Aligned_cols=92 Identities=5% Similarity=0.013 Sum_probs=41.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-HhcCc--HHHHHHHHHHHHhcCCcccHhhHHHHHHHHH
Q 010320 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY-FRCNA--VDKLANFVKRAESAGWRLCRSLYHSKMVMYA 449 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~--~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 449 (513)
+...|...|++++|...|++..+. .|.+..++..+..++ ...|+ .++|.+++++..+.... +...+..+...+.
T Consensus 79 Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~ 155 (198)
T PRK10370 79 LGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAF 155 (198)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHH
Confidence 444445555555555555544442 233333444444432 33333 24555555554443322 3344444444445
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 010320 450 SQRRVEEMESVLKEMENY 467 (513)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~ 467 (513)
+.|++++|...|+++.+.
T Consensus 156 ~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 156 MQADYAQAIELWQKVLDL 173 (198)
T ss_pred HcCCHHHHHHHHHHHHhh
Confidence 555555555555555443
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.24 E-value=6.9e-05 Score=60.81 Aligned_cols=99 Identities=10% Similarity=-0.114 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010320 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~ 235 (513)
+..+..+...+...|++++|...|+......+.+...|..+...+.+.|++++|+..|+..... .+.+...+..+..+
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~ 101 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHH
Confidence 3345567788899999999999999999988779999999999999999999999999999963 35677899999999
Q ss_pred HHhcCChhHHHHHHHHHHHCC
Q 010320 236 FGRLLLVDHMEAAFQEIKDSN 256 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g 256 (513)
+.+.|+.++|+..|+...+..
T Consensus 102 l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999998754
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.24 E-value=0.00018 Score=73.47 Aligned_cols=169 Identities=9% Similarity=-0.011 Sum_probs=130.9
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHH
Q 010320 129 QLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDK 208 (513)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~ 208 (513)
.-.+..++|..+++...+. .|-+......+..++.+.+++++|+..+++.....+.+....+.+..++.+.|++++
T Consensus 97 ~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHH
Confidence 3367899999999988763 233566667889999999999999999999999888899999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010320 209 CQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 209 A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 288 (513)
|.++|++.... .+-+..++..+..++-+.|+.++|...|++..+.- .+....|+..+. ++..-..+++.+.
T Consensus 173 A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~ 243 (694)
T PRK15179 173 ADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------DLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------HHHHHHHHHHHcC
Confidence 99999999963 23347899999999999999999999999998642 345566666553 3455566677765
Q ss_pred cCC----CCCCHHHHHHHHHHHHhcC
Q 010320 289 AGP----VMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 289 ~~g----~~p~~~t~~~ll~~~~~~g 310 (513)
-.+ ......+...+|.-+.+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 244 VEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred cccccCCCceeeeeHHHHHHHHhhcC
Confidence 543 3333455566666665543
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.24 E-value=7.2e-05 Score=60.23 Aligned_cols=96 Identities=11% Similarity=-0.049 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010320 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270 (513)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 270 (513)
.....+...+...|++++|.+.|+.+... .+.+...|..+...+.+.|++++|..+|++..+.+. .+...+..+...
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-DDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CChHHHHHHHHH
Confidence 33344444444444444444444444432 122334444444444444444444444444443321 233344444444
Q ss_pred HHHccCHHHHHHHHHHHHc
Q 010320 271 YMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 271 ~~~~g~~~~a~~~~~~m~~ 289 (513)
+...|++++|.+.|+...+
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444444
No 130
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.20 E-value=0.00073 Score=68.62 Aligned_cols=110 Identities=6% Similarity=0.007 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010320 384 EEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKE 463 (513)
Q Consensus 384 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 463 (513)
+.|+..+++.++ ...++..+||.|.-. ...|++.-+..-|-.-.... +-...+|..+-..+.+..+++.|...|..
T Consensus 800 ~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 800 CTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred HHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHh
Confidence 356666665554 223345556655433 44455555554444333222 12344555555566677777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010320 464 MENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGL 498 (513)
Q Consensus 464 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (513)
.+..+ +-|...|--........|+.-++..+|..
T Consensus 876 ~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 876 VQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 77655 34555555444444555655555555543
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=0.00018 Score=67.31 Aligned_cols=164 Identities=14% Similarity=0.022 Sum_probs=108.5
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHH
Q 010320 153 PMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTYNT 231 (513)
Q Consensus 153 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~ 231 (513)
.|+...+...+........-..+..++..-.+. .-...+--....+...|++++|+..++.+.+. .||. .-+..
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~ 345 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA---QPDNPYYLEL 345 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCHHHHHH
Confidence 356666666666554444444444444333331 12223333333455678888888888888764 4544 44455
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010320 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 310 (513)
....+.+.++.++|.+.++.+... .|+ ...+-.+..+|.+.|++.+|+.+++...... +-|...|..|.++|...|
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g 422 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELG 422 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhC
Confidence 667788888888888888888875 355 4555666778888888888888888877653 446788888888888888
Q ss_pred ChHHHHHHHHHHHh
Q 010320 311 NLPRMEKIYELVKH 324 (513)
Q Consensus 311 ~~~~a~~~~~~~~~ 324 (513)
+..++.....+...
T Consensus 423 ~~~~a~~A~AE~~~ 436 (484)
T COG4783 423 NRAEALLARAEGYA 436 (484)
T ss_pred chHHHHHHHHHHHH
Confidence 88887777666543
No 132
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.16 E-value=0.011 Score=58.96 Aligned_cols=130 Identities=8% Similarity=-0.032 Sum_probs=98.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 010320 333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS 412 (513)
Q Consensus 333 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 412 (513)
.|......+.+.+..+.+..++.....+.. ..++.+......+...|++++|.+.|..... ..|.++....++...
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~--l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDP--LSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcch--hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHH
Confidence 344555666777777776655554444442 2233333455677788999999999988777 445566678899999
Q ss_pred HHhcCcHHHHHH--HHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010320 413 YFRCNAVDKLAN--FVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 413 ~~~~~~~~~a~~--~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
+...|+...|.. ++.++.+.+.. +...|-.+...+-+.|+.++|.+.|.-..+.
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 999998888888 99999988854 7889999999999999999999999877654
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.0032 Score=54.04 Aligned_cols=190 Identities=11% Similarity=-0.004 Sum_probs=134.5
Q ss_pred CChHHHHHHHHHHHHcCCCC-CCCCHHH-HHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHH
Q 010320 132 SRPRLALEVLNWRRRQAGYG-TPMTKEE-YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKC 209 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g-~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A 209 (513)
+++++.++++..+......| ..++..+ |..++-+....|+.+.|..+++++..+-+.+..+--.-.-.+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 47777778777776655555 4555543 456666777889999999999998887643433322222334456899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 210 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
+++++.+..+ -+-|.++|--=+-..-..|.--+|++-+.+..+. +..|...|.-+-..|...|++++|.-.+++|.-
T Consensus 106 ~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 106 IEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 9999999975 3566777766666666667777888877777664 446999999999999999999999999999887
Q ss_pred CCCCCCH-HHHHHHHHHHHh---cCChHHHHHHHHHHHhcc
Q 010320 290 GPVMPDT-NTYLLLLRGYAH---SGNLPRMEKIYELVKHHV 326 (513)
Q Consensus 290 ~g~~p~~-~t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~ 326 (513)
+.|-. ..+..+...+.- ..+++.+.++|.+..+..
T Consensus 183 --~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 --IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred --cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 45653 344444444433 336777888888888753
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0017 Score=56.09 Aligned_cols=216 Identities=12% Similarity=0.055 Sum_probs=96.6
Q ss_pred cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010320 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246 (513)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 246 (513)
.-.|++..++..-+...... .++..-.-+-++|...|.+... ..+++. |-.|.......+.......++.+.-+
T Consensus 19 fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~---~~eI~~--~~~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIV---ISEIKE--GKATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccc---cccccc--ccCChHHHHHHHHHHhhCcchhHHHH
Confidence 33455555544433332221 1233333344555555554322 233332 22344444444444444344433333
Q ss_pred -HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320 247 -AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 247 -~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
++.+.+......-+......-...|+..|++++|++...... +......=...+.+..+++-|.+.+++|.+.
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 233333333232232333333345666677777776665511 2223333344455666667777777776664
Q ss_pred cCCCcHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCcccc-hHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010320 326 VDGKEFPLIRAMICAYSKC-SVTDRIKKIEALMRLIPEKEYRPW-LNVLLIRVYAKEDCLEEMEKSINDAFEHK 397 (513)
Q Consensus 326 ~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 397 (513)
. +..+.+-|..++.+. +.-+++..++-+|+++.++-...+ +-+-...++...|++++|..++++.+.+.
T Consensus 167 d---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 167 D---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred c---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 2 344455555554432 111234455555555555333222 11123344444556666666666555543
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.12 E-value=0.0057 Score=58.30 Aligned_cols=211 Identities=18% Similarity=0.140 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHhccCC-CHhHHHHHHHHHH---HcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 010320 172 VDLAADLFAEAANKHLK-TIGTYNALLGAYM---YNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEA 247 (513)
Q Consensus 172 ~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 247 (513)
.+++..+++.....-.. +.-+|..+..--- ...+.+...++++++.....+.|+ .+|..+|+.-.+..-++.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 46666777765543222 4444444433211 112467788888888876455555 478888999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010320 248 AFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326 (513)
Q Consensus 248 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 326 (513)
+|.+..+.+..+ ++.+++++|..||. ++.+-|.++|+.=.+. ..-+..-...-+.-+...|+-..+..+|+.....+
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 999999988777 88999999998876 6889999999874442 12234444566777788899999999999999986
Q ss_pred CCCc--HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CcccchHHHHHHHHHhcCCHHH
Q 010320 327 DGKE--FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEK--EYRPWLNVLLIRVYAKEDCLEE 385 (513)
Q Consensus 327 ~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~ 385 (513)
.+++ ...|..+++--..-|++..+.++.+.....-+. .........+++-|.-.+.+..
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence 6664 468999999999999988877775544333221 1111112245666665554433
No 136
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.11 E-value=6.2e-05 Score=71.32 Aligned_cols=134 Identities=13% Similarity=0.063 Sum_probs=103.3
Q ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010320 140 VLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL--K-TIGTYNALLGAYMYNGLSDKCQSLFRDL 216 (513)
Q Consensus 140 ~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 216 (513)
++..|.+.-..+.+-+......+++.+....+++.+.+++-+.....- . -..+.+++|+.|.+.|..++++++++.=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 444444443333455777788888888888888889888888776522 1 2456678999999999999999999887
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010320 217 KKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274 (513)
Q Consensus 217 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 274 (513)
.. +|+-||..++|.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+-
T Consensus 130 ~~-yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQ-YGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hh-cccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 75 5999999999999999999999999999998888777767777777777776665
No 137
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.0016 Score=56.31 Aligned_cols=50 Identities=6% Similarity=0.067 Sum_probs=23.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 010320 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES 431 (513)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 431 (513)
.+++..|.-+|++|-++ .+++..+.+....++...|++++|..+++....
T Consensus 186 gek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred chhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34455555555554442 122333444444444555555555555555443
No 138
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.10 E-value=6.7e-05 Score=55.56 Aligned_cols=79 Identities=23% Similarity=0.402 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHHHCCCCCCHHHH
Q 010320 194 NALLGAYMYNGLSDKCQSLFRDLKKEANI-SPSIVTYNTLISVFGRLLL--------VDHMEAAFQEIKDSNLSPNVFTY 264 (513)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~--------~~~A~~~~~~m~~~g~~p~~~~~ 264 (513)
...|..+...+++...-.+|+.+++. |+ .|+..+|+.++.+.++..- +-..+.+|++|...+++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN-~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRN-GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34455555567777777777777764 77 7777777777777665431 23345566666666666666666
Q ss_pred HHHHHHHHH
Q 010320 265 NYLIAGYMT 273 (513)
Q Consensus 265 ~~li~~~~~ 273 (513)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 666655544
No 139
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.08 E-value=0.0072 Score=54.25 Aligned_cols=270 Identities=7% Similarity=-0.062 Sum_probs=160.3
Q ss_pred CHHHHHHHH---HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH----
Q 010320 155 TKEEYTKGI---KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV---- 227 (513)
Q Consensus 155 ~~~~~~~ll---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~---- 227 (513)
|+..|-++. ..|...|+...|+.=++...+..+.-...--.-...+.+.|.+++|..=|+...+. .|+..
T Consensus 68 dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~e 144 (504)
T KOG0624|consen 68 DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQH---EPSNGLVLE 144 (504)
T ss_pred CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc---CCCcchhHH
Confidence 444554443 34566677777776666666643221111111123466778888888888877754 23211
Q ss_pred HH------------HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC
Q 010320 228 TY------------NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295 (513)
Q Consensus 228 ~~------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 295 (513)
.+ ...+..+.-.|+...|++....+++..+ -|...|..-..+|...|++..|+.=++...+-. .-+
T Consensus 145 aqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~Dn 222 (504)
T KOG0624|consen 145 AQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDN 222 (504)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccc
Confidence 11 2234445567888888888888887654 477888888888888888888887666554422 224
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH-------------HHHhcCChhHHHHHHHHHHhCCC
Q 010320 296 TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC-------------AYSKCSVTDRIKKIEALMRLIPE 362 (513)
Q Consensus 296 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~-------------~~~~~g~~~~a~~~~~~~~~~~~ 362 (513)
..++--+-..+...|+.+.++....+..+.+ ||-..+-..-. .....+++-+..+..+...+..+
T Consensus 223 Te~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 223 TEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 6666677777788888888888877777642 33322111100 11122333333333222222221
Q ss_pred CCccc--chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Q 010320 363 KEYRP--WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAG 433 (513)
Q Consensus 363 ~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 433 (513)
..... .....+-.++...+++.+|++...+++. ..+.+..++.--..+|.-...++.|+.=|+...+.+
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 11111 1122345566667888888888888777 556677777777778888888888888888776554
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.08 E-value=0.00016 Score=58.22 Aligned_cols=107 Identities=10% Similarity=-0.109 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLIS 234 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~ 234 (513)
+......+...+.+.|++++|.+.|+.....++.+...|..+...+.+.|++++|..+|+...+. .+.+..++..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DPDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCChHHHHHHHH
Confidence 44556677788889999999999999998877778899999999999999999999999998763 3556788888889
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 010320 235 VFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN 265 (513)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 265 (513)
.+...|+++.|...|++..+.. |+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 122 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEIC--GENPEYS 122 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhc--cccchHH
Confidence 9999999999999999998753 5544443
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.07 E-value=0.00022 Score=67.37 Aligned_cols=120 Identities=15% Similarity=0.107 Sum_probs=54.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 010320 195 ALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTA 274 (513)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 274 (513)
.|+..+...++++.|+++|+++.+. .|+. ...++..+...++-.+|.+++++..+... -|....+.-...|.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 3344444444455555555554432 2332 22244444444444455555544443221 2333344444444455
Q ss_pred cCHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010320 275 WMWGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELV 322 (513)
Q Consensus 275 g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~ 322 (513)
++++.|+++.+++.+ ..|+ -.+|..|..+|...|+++.|+..+..+
T Consensus 248 ~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 248 KKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555555544 2333 235555555555555555555554443
No 142
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.06 E-value=6.5e-05 Score=71.17 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=103.5
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010320 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN-ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 267 (513)
+......+++.+....+.+.+..++-+.+.... ...-..|..++|+.|.+.|..+.++.+++.=...|+-||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 777888888888888889999999998886411 1112235579999999999999999999999999999999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 010320 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS 309 (513)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 309 (513)
|+.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999998877777888888888888776
No 143
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.06 E-value=8.1e-05 Score=55.13 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=57.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHcCCCCCCHHHHH
Q 010320 230 NTLISVFGRLLLVDHMEAAFQEIKDSNL-SPNVFTYNYLIAGYMTAWM--------WGKVEEIYQMMKAGPVMPDTNTYL 300 (513)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~--------~~~a~~~~~~m~~~g~~p~~~t~~ 300 (513)
...|.-|...+++...-.+|+.++..|+ .|++.+|+.++.+.++..- .-+.+.+|+.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455566666888888888888888888 7888888888887776432 234566777777777888888888
Q ss_pred HHHHHHHh
Q 010320 301 LLLRGYAH 308 (513)
Q Consensus 301 ~ll~~~~~ 308 (513)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 87777654
No 144
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.05 E-value=0.0001 Score=61.80 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010320 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311 (513)
Q Consensus 277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 311 (513)
-+-|++++++|...|+.||..|+..|++.+.+.+.
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 45677777888888888888888888777766554
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.04 E-value=4.4e-06 Score=47.46 Aligned_cols=29 Identities=31% Similarity=0.525 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcCC
Q 010320 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGP 291 (513)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 291 (513)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34445555555555555555555544443
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.01 E-value=6.9e-06 Score=46.65 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010320 475 TFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504 (513)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 504 (513)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 466666666666666666666666666553
No 147
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.01 E-value=0.0076 Score=60.92 Aligned_cols=137 Identities=13% Similarity=0.114 Sum_probs=92.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc
Q 010320 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV--FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275 (513)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 275 (513)
-.....+++.+|+....++.++ .||. .|..++.+ ..+.|..++|..+++.....+.. |..|...+-.+|...|
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk---~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKK---HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHH---CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHh
Confidence 3445677888888888888876 3554 34444444 35778888888888887766554 7888888888888888
Q ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 010320 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342 (513)
Q Consensus 276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (513)
+.++|..+|+...+. -|+..-...+..+|.+.+++.+-.++--++.+. .+.+...+=+++..+.
T Consensus 92 ~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 92 KLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLIL 155 (932)
T ss_pred hhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHH
Confidence 888888888888763 477777777888888887766544443333332 2334444444444443
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.00 E-value=0.00041 Score=56.50 Aligned_cols=123 Identities=15% Similarity=0.095 Sum_probs=61.4
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHH
Q 010320 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYN 230 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~ 230 (513)
.|..++..+ ..++...+.+.++.+...+..+ ....-.+...+...|++++|...|+..... . ||. ...-
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~--~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-A--PDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--CCHHHHHHHHH
Confidence 344444444 3555566666666665544433 122222334555566666666666666543 2 222 1223
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 010320 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM 286 (513)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 286 (513)
.|...+...|++++|+..++...... .....+......|.+.|++++|...|+.
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34455555666666666665533221 2233444555556666666666665554
No 149
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.98 E-value=0.0003 Score=66.44 Aligned_cols=125 Identities=10% Similarity=0.007 Sum_probs=94.8
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010320 159 YTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR 238 (513)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 238 (513)
-..|+..+...++++.|.++|+++.+.. +.....+++.+...++..+|.+++++..+. .+-|......-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 3455666667788888888888888764 345556777787888888888888888864 34466677777777888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
.++.+.|+++.+++.+..+ -+..+|..|..+|.+.|+++.|+-.++.+-.
T Consensus 247 k~~~~lAL~iAk~av~lsP-~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSP-SEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8888888888888887532 2456888888888888888888888877654
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0077 Score=51.81 Aligned_cols=144 Identities=11% Similarity=-0.021 Sum_probs=66.8
Q ss_pred cCChHHHHHHHHHHHHhC--C-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHccCH
Q 010320 203 NGLSDKCQSLFRDLKKEA--N-ISPSIV-TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI-AGYMTAWMW 277 (513)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~--g-~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~ 277 (513)
..+.++..+++.++.... | ..++.. .|-.++-+....|+.+.|...++++...- |...-...|= -.+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 345666666666665321 2 334432 33444455555666666666666655432 2221111111 112224556
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHH
Q 010320 278 GKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRI 350 (513)
Q Consensus 278 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 350 (513)
++|+++|+.+.+.. +.|.++|---+-..-..|+--+|++-+....+. +..|...|.-+.+.|...|++++|
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHH
Confidence 66666666665544 234445544444444444444444444444333 333444444444444444444443
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.95 E-value=0.00044 Score=56.32 Aligned_cols=126 Identities=17% Similarity=0.115 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHH
Q 010320 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNV--FTY 264 (513)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~ 264 (513)
..|..++..+ ..++...+.+.++.+.... |+. ...-.+...+...|++++|...|+........++. ...
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~---~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY---PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 3455555555 4788888888888888752 332 23334557778889999999999988876533322 234
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010320 265 NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELV 322 (513)
Q Consensus 265 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 322 (513)
-.|...+...|++++|+..++...... .....+......+.+.|+.++|...|+..
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 446677788888999988887644333 23456667788888888888888888753
No 152
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.93 E-value=0.00025 Score=59.54 Aligned_cols=102 Identities=12% Similarity=0.147 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHhc-----ccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHH
Q 010320 155 TKEEYTKGIKFAG-----RINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVT 228 (513)
Q Consensus 155 ~~~~~~~ll~~~~-----~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~ 228 (513)
|..+|..+++.|. +.|.++-....+..|.+-|+. |..+|+.|+..+=+ |.+- -..+|+.+--.
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h--------- 114 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH--------- 114 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc---------
Confidence 6666666666654 235555555566666666654 66666666655544 2211 11222222110
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010320 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276 (513)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 276 (513)
--.+.+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 115 ---------yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 ---------YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 012356789999999999999999999999999877653
No 153
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.84 E-value=0.05 Score=56.03 Aligned_cols=180 Identities=8% Similarity=-0.071 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010320 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDA 393 (513)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 393 (513)
.|...++..++. ...+..+|+.|--. ...|.+.-+...+-.-....+.....|.| +...+.++.+++.|...|...
T Consensus 801 ~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~N--lgvL~l~n~d~E~A~~af~~~ 876 (1238)
T KOG1127|consen 801 TAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLN--LGVLVLENQDFEHAEPAFSSV 876 (1238)
T ss_pred HHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheec--cceeEEecccHHHhhHHHHhh
Confidence 445555554443 12344455544433 44444444444443333344444555543 444566677888888888766
Q ss_pred HhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH----HhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh---
Q 010320 394 FEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA----ESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN--- 466 (513)
Q Consensus 394 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--- 466 (513)
.. ..|.+...|-.....-...|+.-+...+|..- ...|-.++..-|-+...-....|+.++-+...+.+-.
T Consensus 877 qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 877 QS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred hh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 55 44555555544444444567777777777652 1233344444444444444556665554443332222
Q ss_pred ------CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010320 467 ------YKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 467 ------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
.+.+-+...|.+.....-+.+.+..|.++..+.
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 244555667777777777777777777766554
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.81 E-value=0.00098 Score=52.08 Aligned_cols=96 Identities=16% Similarity=0.030 Sum_probs=42.7
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Q 010320 160 TKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANIS-PSIVTYNTLISV 235 (513)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~-p~~~~~~~li~~ 235 (513)
-.+...+.+.|++++|.+.|+.+......+ ...+..+...+.+.|++++|...|+.+.....-. .....+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 334444445555555555555554433211 2334444455555555555555555544321000 012334444444
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 010320 236 FGRLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~ 255 (513)
+.+.|+.++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 44555555555555555443
No 155
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.80 E-value=0.00062 Score=62.17 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=85.1
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHH-HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010320 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA-YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~ 235 (513)
.+|..++...-+.+..+.|..+|.+..+.+.-+..+|-..... |...++.+.|..+|+...+. +..+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 3567777777777778888888888775443344444444444 33346666688888887765 45566777777788
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320 236 FGRLLLVDHMEAAFQEIKDSNLSPNV----FTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
+.+.|+.+.|..+|++.... + +.. ..|...+..=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888887754 3 333 3777777777777777777777777766
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.77 E-value=0.00049 Score=50.90 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010320 194 NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273 (513)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 273 (513)
..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|.+.|++...... .+..++..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHH
Confidence 33444445555555555555555432 122224444455555555555555555555544322 123445555555555
Q ss_pred ccCHHHHHHHHHHHHc
Q 010320 274 AWMWGKVEEIYQMMKA 289 (513)
Q Consensus 274 ~g~~~~a~~~~~~m~~ 289 (513)
.|++++|...++...+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 5555555555555443
No 157
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.66 E-value=0.053 Score=50.87 Aligned_cols=122 Identities=9% Similarity=0.013 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHH----HHHHhc---CcHHHHHHHHHHHHhcCCcccH----hhHHHHHH--HHH
Q 010320 383 LEEMEKSINDAFEHKTSVTTVRIMRCIV----SSYFRC---NAVDKLANFVKRAESAGWRLCR----SLYHSKMV--MYA 449 (513)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~~~~~~li----~~~~~~---~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~--~~~ 449 (513)
-++|+++++.+++ ..+.+...-|.+. .+|... ..+..-..+-+-+.+.|+.|-. ..-|.|-+ .+.
T Consensus 396 dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 396 DEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred cHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 5666777766665 2333333222222 122221 1222233333334556766532 23344433 334
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCCCCCCCC
Q 010320 450 SQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVPVNAFPS 513 (513)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~S 513 (513)
..|++.++...-.-+.+ +.|++.+|..+.-+.....++++|..++.++ +|+..+++|
T Consensus 474 sqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred hcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 68888887765444443 6799999999999999999999999999863 456555543
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.64 E-value=0.003 Score=62.68 Aligned_cols=64 Identities=13% Similarity=-0.014 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
+...|..+.-.....|++++|...+++.... .|+...|..+...+...|+.++|.+.+++..+.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455555555555566777777777776663 356666666777777777777777777666554
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.63 E-value=0.0013 Score=48.47 Aligned_cols=93 Identities=13% Similarity=0.115 Sum_probs=48.5
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010320 160 TKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239 (513)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 239 (513)
..+...+...|++++|.+++++..+....+...+..+...+...|++++|.+.|+..... .+.+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHHH
Confidence 344444555555555555555555543334445555555555555555555555555432 122334555555555555
Q ss_pred CChhHHHHHHHHHHH
Q 010320 240 LLVDHMEAAFQEIKD 254 (513)
Q Consensus 240 g~~~~A~~~~~~m~~ 254 (513)
|+++.|...+++..+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 555555555555443
No 160
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.63 E-value=0.0012 Score=60.37 Aligned_cols=132 Identities=12% Similarity=0.035 Sum_probs=84.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH----hcCCc-ccHhhHHH
Q 010320 373 LIRVYAKEDCLEEMEKSINDAFE----HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE----SAGWR-LCRSLYHS 443 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~-p~~~~~~~ 443 (513)
|...|.-.|+++.|+...+.-++ -|.....-..+..+.+++.-.|+++.|.+.|+... +.|-+ ......-+
T Consensus 201 LGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYS 280 (639)
T KOG1130|consen 201 LGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYS 280 (639)
T ss_pred cCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 45555566788888866543222 23333334457778888888999999999888643 23321 12333445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010320 444 KMVMYASQRRVEEMESVLKEMEN----Y-KIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504 (513)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 504 (513)
|...|.-..+++.|+.++.+-.. . +..-....|++|..+|...|..++|+.+.+.-.+...
T Consensus 281 LgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ 346 (639)
T KOG1130|consen 281 LGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL 346 (639)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 66677777778888887754322 1 1223457888999999999999999888776554433
No 161
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.63 E-value=0.0017 Score=59.37 Aligned_cols=128 Identities=10% Similarity=0.123 Sum_probs=79.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010320 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (513)
.++...-+.+..+.|..+|++..+.+.......+..+++. |...++.+.|.++|+...+. +.-+...|...++.+.+.
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHh
Confidence 4566666666777777788777654433333332233332 33356666688888876543 334566677777777788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320 452 RRVEEMESVLKEMENYKIDCSK---KTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
|+.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 84 ~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 84 NDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp T-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888877754 33222 47777777777888888887777777653
No 162
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.62 E-value=0.0027 Score=49.55 Aligned_cols=95 Identities=12% Similarity=-0.073 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHH
Q 010320 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS--PNVFTYN 265 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~ 265 (513)
++..+...+.+.|++++|.+.|+.+... .|+ ...+..+..++.+.|+++.|...|+++...... ....++.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK---YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 3444445555555555555555555543 121 223444555555555555555555555443211 0123344
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHc
Q 010320 266 YLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
.+..++.+.|++++|.+.++++.+
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHH
Confidence 444445555555555555555544
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.60 E-value=0.00018 Score=52.20 Aligned_cols=82 Identities=10% Similarity=0.073 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHH
Q 010320 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES 459 (513)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 459 (513)
.|+++.|+.+++++.+.....++...+..+..+|.+.|++++|.++++. .+.+.. +....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 3455555555555555332111222333345555555555555555554 111111 11222233444555555555555
Q ss_pred HHHH
Q 010320 460 VLKE 463 (513)
Q Consensus 460 ~~~~ 463 (513)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 164
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.60 E-value=0.11 Score=52.95 Aligned_cols=198 Identities=13% Similarity=0.038 Sum_probs=134.5
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010320 123 FVELMKQL----GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG 198 (513)
Q Consensus 123 ~~~~l~~~----~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~ 198 (513)
|..+++++ .+++++|..+++.....+. -|..+...+-..|...++.++|..+|++.....+ +......+..
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~----~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P-~eell~~lFm 118 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKG----TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYP-SEELLYHLFM 118 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCC----CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC-cHHHHHHHHH
Confidence 55555555 6788899888887655432 2899999999999999999999999999988654 4777777888
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------ChhHHHHHHHHHHHCC-CCCCHHHHHHH
Q 010320 199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL----------LVDHMEAAFQEIKDSN-LSPNVFTYNYL 267 (513)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~g-~~p~~~~~~~l 267 (513)
+|++.+.+.+-.++=-+|-+. .+-+...+=++++.....- -+.-|.+.++.+.+.+ -.-+..-.-.-
T Consensus 119 ayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly 196 (932)
T KOG2053|consen 119 AYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILY 196 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 899998887766666666653 3344555555555554331 1345777788877654 21122222222
Q ss_pred HHHHHHccCHHHHHHHHH-HHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 010320 268 IAGYMTAWMWGKVEEIYQ-MMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327 (513)
Q Consensus 268 i~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 327 (513)
...+-..|.+++|++++. ...+.-..-+...-+.-+..+...+++.+..++-.++...|.
T Consensus 197 l~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 197 LLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 334456788999999983 444433333455555667778888888888888888887754
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.59 E-value=0.0069 Score=55.56 Aligned_cols=199 Identities=12% Similarity=0.091 Sum_probs=111.1
Q ss_pred HHHHHccCHHHHHHHHHHHHc----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Q 010320 269 AGYMTAWMWGKVEEIYQMMKA----GPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (513)
..|-..|++++|.+.|.+... .+-..+ ...|......|.+. ++++|.+.++ ..+..|..
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~---------------~A~~~y~~ 106 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYE---------------KAIEIYRE 106 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHH---------------HHHHHHHh
Confidence 456666777777777766533 111101 22333333333222 5555555544 44456778
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhc-CCHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHHhcCc
Q 010320 344 CSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKE-DCLEEMEKSINDAFE----HKTSVTTVRIMRCIVSSYFRCNA 418 (513)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~ 418 (513)
.|++..+-++.. -+...|-.. |++++|++.|++..+ .+....-..++..+...+.+.|+
T Consensus 107 ~G~~~~aA~~~~----------------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 107 AGRFSQAAKCLK----------------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp CT-HHHHHHHHH----------------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred cCcHHHHHHHHH----------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 887776655543 356667676 788888888877554 22222224456778888999999
Q ss_pred HHHHHHHHHHHHhcCC-----cccHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhc--
Q 010320 419 VDKLANFVKRAESAGW-----RLCRS-LYHSKMVMYASQRRVEEMESVLKEMENYK--IDCS--KKTFWIMYYAYATC-- 486 (513)
Q Consensus 419 ~~~a~~~~~~~~~~~~-----~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~--~~~~~~li~~~~~~-- 486 (513)
+++|.++|++...... +.+.. .|-..+-++...|++-.|.+.|++..... +..+ ......|+.+|-..
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~ 250 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDV 250 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCH
Confidence 9999999998765432 22222 23333445666899999999999988653 3222 34455667776542
Q ss_pred CCHhHHHHHHHHH
Q 010320 487 GQRRKVNQVLGLM 499 (513)
Q Consensus 487 g~~~~A~~~~~~m 499 (513)
..++.|+.-|+.+
T Consensus 251 e~f~~av~~~d~~ 263 (282)
T PF14938_consen 251 EAFTEAVAEYDSI 263 (282)
T ss_dssp CCHHHHCHHHTTS
T ss_pred HHHHHHHHHHccc
Confidence 2345555544443
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.56 E-value=0.00029 Score=51.12 Aligned_cols=81 Identities=9% Similarity=0.076 Sum_probs=60.9
Q ss_pred cCcHHHHHHHHHHHHhcCCc-ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 010320 416 CNAVDKLANFVKRAESAGWR-LCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQ 494 (513)
Q Consensus 416 ~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 494 (513)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+ ..+......+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 57899999999999876542 3455566688999999999999999988 3322 1233555566899999999999999
Q ss_pred HHHH
Q 010320 495 VLGL 498 (513)
Q Consensus 495 ~~~~ 498 (513)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9876
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.54 E-value=0.0048 Score=49.59 Aligned_cols=91 Identities=7% Similarity=-0.154 Sum_probs=72.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010320 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 452 (513)
+..-+...|++++|..+|+-... ..|.+..-|..|.-+|-..|++++|++.|.......+ -|+..+-.+-.++...|
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 66667788999999999988777 4455566677888888888999999999998877664 36677777888888999
Q ss_pred CHHHHHHHHHHHHh
Q 010320 453 RVEEMESVLKEMEN 466 (513)
Q Consensus 453 ~~~~A~~~~~~m~~ 466 (513)
+.+.|.+.|+....
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999988887664
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.51 E-value=0.0039 Score=52.44 Aligned_cols=84 Identities=13% Similarity=0.052 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010320 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 450 (513)
.+...+...|++++|...|++.+.....++ ....+..+...+.+.|++++|...+++..+.... +...+..+...|..
T Consensus 40 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 118 (172)
T PRK02603 40 RDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIYHK 118 (172)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH
Confidence 455566666777777777777665433222 2345666666677777777777777766654321 34445555555655
Q ss_pred cCCHHH
Q 010320 451 QRRVEE 456 (513)
Q Consensus 451 ~g~~~~ 456 (513)
.|+...
T Consensus 119 ~g~~~~ 124 (172)
T PRK02603 119 RGEKAE 124 (172)
T ss_pred cCChHh
Confidence 555433
No 169
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.50 E-value=0.00043 Score=47.86 Aligned_cols=62 Identities=23% Similarity=0.343 Sum_probs=38.6
Q ss_pred ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010320 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232 (513)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l 232 (513)
+.|++++|.++|+.+....+.+...+..+..+|.+.|++++|.++++.+... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ---DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG---GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCHHHHHHH
Confidence 4566677777777766665556666666777777777777777777766654 4554444433
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.44 E-value=0.005 Score=58.40 Aligned_cols=100 Identities=16% Similarity=0.037 Sum_probs=73.6
Q ss_pred HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010320 164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243 (513)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 243 (513)
..+...|++++|++.|++..+..+.+...|..+..+|.+.|++++|+..+++.... -+.+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHH
Confidence 44556788888888888888776667778888888888888888888888888753 2335667777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH
Q 010320 244 HMEAAFQEIKDSNLSPNVFTYNYL 267 (513)
Q Consensus 244 ~A~~~~~~m~~~g~~p~~~~~~~l 267 (513)
+|+..|++..+.+ |+......+
T Consensus 88 eA~~~~~~al~l~--P~~~~~~~~ 109 (356)
T PLN03088 88 TAKAALEKGASLA--PGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHH
Confidence 8888888887643 444333333
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.43 E-value=0.018 Score=48.40 Aligned_cols=89 Identities=9% Similarity=-0.049 Sum_probs=49.6
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010320 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-S-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 266 (513)
....|..+...+...|++++|...|++..+. .-.+ + ...+..+...+.+.|++++|...+++..+... -+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHH
Confidence 3445566666666666777777666666543 1111 1 24556666666666666666666666665422 13444555
Q ss_pred HHHHHHHccCHHH
Q 010320 267 LIAGYMTAWMWGK 279 (513)
Q Consensus 267 li~~~~~~g~~~~ 279 (513)
+...+...|+...
T Consensus 112 lg~~~~~~g~~~~ 124 (172)
T PRK02603 112 IAVIYHKRGEKAE 124 (172)
T ss_pred HHHHHHHcCChHh
Confidence 5555555555433
No 172
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.39 E-value=0.0063 Score=57.75 Aligned_cols=104 Identities=8% Similarity=-0.033 Sum_probs=83.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC
Q 010320 197 LGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM 276 (513)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 276 (513)
...+...|++++|++.|++..+. -+-+...|..+..+|.+.|++++|+..+++..+... .+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCC
Confidence 45567889999999999999874 245677888889999999999999999999988653 367788888999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010320 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305 (513)
Q Consensus 277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 305 (513)
+++|+..|++..+ +.|+......++..
T Consensus 86 ~~eA~~~~~~al~--l~P~~~~~~~~l~~ 112 (356)
T PLN03088 86 YQTAKAALEKGAS--LAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 9999999999987 44665444444433
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.34 E-value=0.0011 Score=45.28 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=37.8
Q ss_pred HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010320 163 IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
...+.+.|++++|.+.|+++.+..+.+...|..+..++...|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566677777777777777666556667777777777777777777777766643
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.34 E-value=0.039 Score=50.62 Aligned_cols=114 Identities=17% Similarity=0.241 Sum_probs=74.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc-CcHHHHHHHHHHHHh----cCCc-ccHhhHHHHHH
Q 010320 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC-NAVDKLANFVKRAES----AGWR-LCRSLYHSKMV 446 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~----~~~~-p~~~~~~~li~ 446 (513)
.+..|...|++..|-+. +..+...|... |+++.|++.|++..+ .+.. --...+..+..
T Consensus 100 A~~~y~~~G~~~~aA~~----------------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKC----------------LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHH----------------HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHH----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 55666666666665544 44455567777 899999999987643 2311 12345677788
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320 447 MYASQRRVEEMESVLKEMENYKID-----CSKK-TFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 447 ~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
.+.+.|++++|.++|++....-.. .+.. .|-..+-++...|++..|.+.+++....
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 899999999999999998765322 2222 3334555777889999999999988754
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.32 E-value=0.0079 Score=50.40 Aligned_cols=95 Identities=5% Similarity=-0.192 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc--cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010320 403 VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL--CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480 (513)
Q Consensus 403 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 480 (513)
...|..+...+...|++++|...+++.......+ ...+|..+...|...|++++|+..++...... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4456666667777788888888888776543222 23466777777888888888888888777643 33345555555
Q ss_pred HHHH-------hcCCHhHHHHHHHH
Q 010320 481 YAYA-------TCGQRRKVNQVLGL 498 (513)
Q Consensus 481 ~~~~-------~~g~~~~A~~~~~~ 498 (513)
..+. ..|+++.|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5665 77777766555554
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.30 E-value=0.0076 Score=50.47 Aligned_cols=65 Identities=5% Similarity=-0.201 Sum_probs=32.3
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010320 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (513)
...|..+...+...|++++|+..|++......-.+ ...+|..+...+...|++++|+..+++...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555666666666655543210000 113455555555555555555555555554
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.21 E-value=0.014 Score=47.06 Aligned_cols=96 Identities=8% Similarity=0.009 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320 405 IMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484 (513)
Q Consensus 405 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (513)
..-.+...+...|++++|..+|+-+...... +..-|-.|-.++-..|++++|+..|......+ +-|+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3445666778899999999999988766533 55667778888889999999999999999887 468889999999999
Q ss_pred hcCCHhHHHHHHHHHHHC
Q 010320 485 TCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 485 ~~g~~~~A~~~~~~m~~~ 502 (513)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999977544
No 178
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.20 E-value=0.15 Score=45.46 Aligned_cols=177 Identities=14% Similarity=0.057 Sum_probs=99.1
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHH---HHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320 161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTY---NALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFG 237 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~ 237 (513)
.....+.+.|++++|.+.|+.+....+.+.... -.+..++.+.+++++|...|++..+...-.|+. -|...+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHh
Confidence 344445678999999999999988655444333 455677888999999999999988764333333 3333333332
Q ss_pred h--cC---------------C---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHH
Q 010320 238 R--LL---------------L---VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTN 297 (513)
Q Consensus 238 ~--~g---------------~---~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 297 (513)
. .+ | ...|...|+++++. -|+ ..-..+|...+..+... .- .
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~---la-~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR---LA-K 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH---HH-H
Confidence 1 11 1 12344445555443 122 22234444333333220 00 0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010320 298 TYLLLLRGYAHSGNLPRMEKIYELVKHH--VDGKEFPLIRAMICAYSKCSVTDRIKKIEALM 357 (513)
Q Consensus 298 t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 357 (513)
.--.+.+-|.+.|++..|..-++.+.+. +.+........++.+|.+.|..+.+..+..++
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1124555677778887787777777764 22223334455666677777666666655544
No 179
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.13 E-value=0.22 Score=46.21 Aligned_cols=102 Identities=16% Similarity=0.112 Sum_probs=66.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010320 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 452 (513)
.+.-+...|+...|.++-++ ..+++...|-..+.+++..++|++-.++-.. . -++.-|..++.+|.+.|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~-----Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKE-----FKVPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHH-----cCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCC
Confidence 45556667777777766544 3455666677778888888888776665432 1 13466777788888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 010320 453 RVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQV 495 (513)
Q Consensus 453 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 495 (513)
+..+|..+...+. +..-+..|.+.|++.+|.+.
T Consensus 252 ~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 252 NKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHH
Confidence 8888777776621 24456666777777776554
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.09 E-value=0.061 Score=53.56 Aligned_cols=57 Identities=7% Similarity=-0.102 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHH
Q 010320 297 NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEA 355 (513)
Q Consensus 297 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 355 (513)
..|..+.-.+...|++++|...+++..+.. |+...|..+...+...|+.++|.+.++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444333334455555555555544432 234444444555555554444444443
No 181
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.033 Score=49.64 Aligned_cols=127 Identities=12% Similarity=0.085 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CChhHHHHHH
Q 010320 173 DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL---LLVDHMEAAF 249 (513)
Q Consensus 173 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~ 249 (513)
+....-++.-...++.|...|-.|...|...|+.+.|..-|....+-.| +|...+..+..++... .+-.++..+|
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 3334444444455555888999999999999999999999988886533 4455555554444332 3456788888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010320 250 QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304 (513)
Q Consensus 250 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 304 (513)
+++..... -|+.+-..|-..+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 217 ~~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 217 RQALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 88887543 366667777778888888888888888888743 43334444443
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.02 E-value=0.22 Score=44.35 Aligned_cols=56 Identities=13% Similarity=0.142 Sum_probs=34.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHcCCCCCCH-HH---HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320 268 IAGYMTAWMWGKVEEIYQMMKAGPVMPDT-NT---YLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
...+.+.|++++|.+.|+++...- |+. .. .-.+..++.+.+++++|...+++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334455677777777777776632 332 11 234556667777777777777777664
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.00 E-value=0.0044 Score=42.23 Aligned_cols=55 Identities=5% Similarity=0.002 Sum_probs=33.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
..+.+.|++++|...|++..+.. +-+...+..+..++...|++++|..+|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44556666666666666666554 33555666666666666666666666666653
No 184
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.98 E-value=0.042 Score=53.74 Aligned_cols=262 Identities=11% Similarity=0.064 Sum_probs=142.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHH---------HHHHHHCCCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHcCC
Q 010320 223 SPSIVTYNTLISVFGRLLLVDHMEAA---------FQEIKDSNLSPNVFTYNYLIAGYMTAWMW--GKVEEIYQMMKAGP 291 (513)
Q Consensus 223 ~p~~~~~~~li~~~~~~g~~~~A~~~---------~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g 291 (513)
.|..+.+.+=+-.|...|.+++|.++ ++.+-.. ..+...+++.=.+|.+..+. -+.+.-+++|+++|
T Consensus 553 ~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg 630 (1081)
T KOG1538|consen 553 SAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRG 630 (1081)
T ss_pred ecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 44445556666667777777776543 2222211 12344456666677765543 34555567788888
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC----CCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCccc
Q 010320 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD----GKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRP 367 (513)
Q Consensus 292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 367 (513)
-.|+... +...|+-.|++.+|-++|.+--...- -.|...+ .+..-|.+.|..+.-....+.-.+....--.|
T Consensus 631 e~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF-D~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP 706 (1081)
T KOG1538|consen 631 ETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF-DYAQEFLGSGDPKEKKMLIRKRADWARNIKEP 706 (1081)
T ss_pred CCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH-HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc
Confidence 8788643 44556777888888888865322110 0111111 12233444443332222211111100011111
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHH-----H-H--hcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHh
Q 010320 368 WLNVLLIRVYAKEDCLEEMEKSIND-----A-F--EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRS 439 (513)
Q Consensus 368 ~~~~~li~~~~~~~~~~~a~~~~~~-----~-~--~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 439 (513)
. +....+...|+.++|..+.-+ | . .+.....+..+...+..-+-+...+..|-++|..|-+.
T Consensus 707 k---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------- 776 (1081)
T KOG1538|consen 707 K---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------- 776 (1081)
T ss_pred H---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------
Confidence 1 234444555666666654321 1 0 11122333344444555555566677788888876432
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----------HHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010320 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSK-----------KTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504 (513)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 504 (513)
..+++.....++|.+|..+-+...+. .||. .-|.-.=.+|.++|+..+|.++++++....+
T Consensus 777 --ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 777 --KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred --HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 35677888899999999998876652 2332 1244455789999999999999998866544
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.97 E-value=0.0043 Score=42.86 Aligned_cols=62 Identities=18% Similarity=0.106 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC-ChHHHHHHHHHHH
Q 010320 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG-LSDKCQSLFRDLK 217 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~ 217 (513)
...|..+...+...|++++|+..|++..+..+.+...|..+..+|...| ++++|++.|++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3445555555555555555555555555554445555555555555555 4555555555544
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.96 E-value=0.005 Score=42.40 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=37.3
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 010320 201 MYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYL 267 (513)
Q Consensus 201 ~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 267 (513)
...|++++|+++|+++... .+-|...+..+..+|.+.|++++|..+++++... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 3556677777777776654 2335556666667777777777777777766654 2444444433
No 187
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.94 E-value=0.025 Score=50.82 Aligned_cols=96 Identities=15% Similarity=0.098 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHH
Q 010320 157 EEYTKGIKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTY 229 (513)
Q Consensus 157 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~ 229 (513)
..|...+..+.+.|++++|...|+.+.+..+.+ ...+-.+...|...|++++|...|+.+.+.+ |+ ...+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---PKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcchhHHH
Confidence 344444444455566666666666666654432 3455566666666666666666666666431 22 2333
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHC
Q 010320 230 NTLISVFGRLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (513)
-.+...+...|+.+.|..+|+++.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555666666666666666553
No 188
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.25 Score=43.14 Aligned_cols=59 Identities=14% Similarity=0.062 Sum_probs=29.5
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320 160 TKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
+.++..+...|.+.-...++.+..++..+ ++..-..|++.-.+.|+.+.|...|+...+
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek 240 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK 240 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34444444445555555555555554433 444555555555555555555555554443
No 189
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.90 E-value=0.02 Score=50.73 Aligned_cols=100 Identities=14% Similarity=0.086 Sum_probs=71.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHH
Q 010320 377 YAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEE 456 (513)
Q Consensus 377 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 456 (513)
+.+.+++++|+..|.+.++ ..|.+...|..-..+|++.|.++.|.+=-+........ ...+|..|-.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 4566788888888888777 55666666777778888888888887777766654422 35667888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHH
Q 010320 457 MESVLKEMENYKIDCSKKTFWIMYY 481 (513)
Q Consensus 457 A~~~~~~m~~~~~~p~~~~~~~li~ 481 (513)
|++.|++..+ +.|+-.+|..=+.
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHH
Confidence 8888887776 4466666654443
No 190
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.90 E-value=0.017 Score=53.22 Aligned_cols=265 Identities=10% Similarity=-0.028 Sum_probs=137.0
Q ss_pred hcccCCHHHHHHHHHHHHhccCCCH----hHHHHHHHHHHHcCChHHHHHHHHHH--HH-hCCCCC-CHHHHHHHHHHHH
Q 010320 166 AGRINNVDLAADLFAEAANKHLKTI----GTYNALLGAYMYNGLSDKCQSLFRDL--KK-EANISP-SIVTYNTLISVFG 237 (513)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m--~~-~~g~~p-~~~~~~~li~~~~ 237 (513)
+++.|+....+.+|+...+-|-.|. .+|..|..+|.-.+++++|+++...= .. ..|-+. ...+...|.+.+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 5677777777777777777665432 34666666777777777777654310 00 001000 1112222333333
Q ss_pred hcCChhHHHHHHHHH----HHCCC-CCCHHHHHHHHHHHHHccC--------------------HHHHHHHHHHH----H
Q 010320 238 RLLLVDHMEAAFQEI----KDSNL-SPNVFTYNYLIAGYMTAWM--------------------WGKVEEIYQMM----K 288 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m----~~~g~-~p~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m----~ 288 (513)
-.|.+++|...-.+- .+.|- ......+-.+...|...|+ ++.|.++|.+= .
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443221110 01110 0012223334444443332 23344444331 1
Q ss_pred cCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH----hccCCC-cHHHHHHHHHHHHhcCChhHHHHHHH----HHH
Q 010320 289 AGPVM-PDTNTYLLLLRGYAHSGNLPRMEKIYELVK----HHVDGK-EFPLIRAMICAYSKCSVTDRIKKIEA----LMR 358 (513)
Q Consensus 289 ~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~----~~~ 358 (513)
..|-. .-...|..|-+.|.-.|+++.|+...+.-. +.|-.. ....+..+.+++.-.|+++.|.+-++ +..
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 11111 123456666667777788888887776532 222211 23456677777888888877766543 334
Q ss_pred hCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010320 359 LIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE----HKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430 (513)
Q Consensus 359 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 430 (513)
++..+.+.....-.|...|.-...+++|+.++.+-+. .+...-....+-+|..+|...|..++|+.+.+.-.
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4444443332211477777777888888887765332 11222234456678888888888888888777544
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.89 E-value=0.0055 Score=42.34 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHH
Q 010320 439 SLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG-QRRKVNQVLGLMCK 501 (513)
Q Consensus 439 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 501 (513)
..|..+...+...|++++|+..|++..+.+ +-+...|..+..+|...| ++++|++.+++..+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345555555556666666666666655544 334555555556666666 46666666655543
No 192
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.84 E-value=0.037 Score=43.31 Aligned_cols=82 Identities=16% Similarity=0.096 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC----------------CCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHL----------------KTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
|..++..+|-++++.|+++....+++..-.-++ |+..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456777788888888888888777765421110 2344555555555555555555555555555
Q ss_pred hCCCCCCHHHHHHHHHHH
Q 010320 219 EANISPSIVTYNTLISVF 236 (513)
Q Consensus 219 ~~g~~p~~~~~~~li~~~ 236 (513)
.++++-+..+|..|+.-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 555555555555555443
No 193
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.65 Score=46.73 Aligned_cols=326 Identities=9% Similarity=0.023 Sum_probs=185.5
Q ss_pred cCCCCCCCCHHHHHHH-----HHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q 010320 147 QAGYGTPMTKEEYTKG-----IKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN 221 (513)
Q Consensus 147 ~~~~g~~~~~~~~~~l-----l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g 221 (513)
....|++.+..-|..+ +.-+...+.+..|.++-..+......+..+|.....-+.+..+. .-.++++.+.++.+
T Consensus 423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~-~d~~vld~I~~kls 501 (829)
T KOG2280|consen 423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDK-MDEEVLDKIDEKLS 501 (829)
T ss_pred ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCc-cchHHHHHHHHHhc
Confidence 3458899999988755 66677889999999998887553222356677777777766432 11233333333322
Q ss_pred C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCC-----
Q 010320 222 I-SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNL----SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGP----- 291 (513)
Q Consensus 222 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----- 291 (513)
. --...+|..+..-.-..|+.+.|..+++.=...+- -.+..-+...+.-+.+.|+.+-...++-.|.++-
T Consensus 502 ~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 502 AKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred ccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 2 12345777777777789999999988765332211 0122335556666777888887777776665421
Q ss_pred -----CCCC-HHHHHHHHH--------HHHhcCChHHHHHHHH--HHH----hccCCCcHHHHHHHHHHHHhcCChhHH-
Q 010320 292 -----VMPD-TNTYLLLLR--------GYAHSGNLPRMEKIYE--LVK----HHVDGKEFPLIRAMICAYSKCSVTDRI- 350 (513)
Q Consensus 292 -----~~p~-~~t~~~ll~--------~~~~~g~~~~a~~~~~--~~~----~~~~~~~~~~~~~li~~~~~~g~~~~a- 350 (513)
..|. ...|.-+++ .+.+.++-.++...|. ... ..+..|+.. ...+.+.+.......
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFEA 658 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHH
Confidence 0111 122222221 1111222222221111 100 012223222 233334433321111
Q ss_pred ------HHHHHHHHhCCCC-C--cccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHH
Q 010320 351 ------KKIEALMRLIPEK-E--YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDK 421 (513)
Q Consensus 351 ------~~~~~~~~~~~~~-~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 421 (513)
.+.+++.+..... + .....-.--+.-+...|+..+|.++-.+ ...++...|--=+.+++..+++++
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~-----FkipdKr~~wLk~~aLa~~~kwee 733 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSD-----FKIPDKRLWWLKLTALADIKKWEE 733 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHh-----cCCcchhhHHHHHHHHHhhhhHHH
Confidence 1112222222211 1 1111111246667778999999887655 445566777777889999999998
Q ss_pred HHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 010320 422 LANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVL 496 (513)
Q Consensus 422 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 496 (513)
-+++-+.++ .+.-|..++.+|.+.|+.++|.+++.+... +.-...+|.+.|++.+|.++-
T Consensus 734 LekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 734 LEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHH
Confidence 777766543 245677889999999999999999877542 115678888889888887653
No 194
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.83 E-value=0.0098 Score=51.95 Aligned_cols=115 Identities=12% Similarity=0.206 Sum_probs=71.8
Q ss_pred CHhHHHHHHHHHHHc-----CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 010320 189 TIGTYNALLGAYMYN-----GLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263 (513)
Q Consensus 189 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 263 (513)
|-.+|-+.+..+... +.++-.-..++.|.+ +|+..|..+|+.||+.+-+.. ..|...
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgk----------------fiP~nv- 127 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGK----------------FIPQNV- 127 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccc----------------cccHHH-
Confidence 666777777766543 445555556666765 577777777777777654322 112211
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 010320 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNL-PRMEKIYELVK 323 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~~~~ 323 (513)
+....--|-+ +-+-+++++++|...|+.||..+-..|++++.+.+-. .+..++.-.|-
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 1111111222 2345788999999999999999999999999887753 23344444443
No 195
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.82 E-value=0.018 Score=46.88 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH-----HCCCCCCCC
Q 010320 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMC-----KNGYDVPVN 509 (513)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~ 509 (513)
....++..+...|++++|..+.+.+...+ +-|...|..+|.+|...|+...|.++|+++. +.|+.|+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 35566777788999999999999998877 6788899999999999999999999988763 458888753
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.82 E-value=0.092 Score=40.67 Aligned_cols=103 Identities=16% Similarity=0.041 Sum_probs=58.1
Q ss_pred HHHhcccCCHHHHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC----HHHHHHHHHH
Q 010320 163 IKFAGRINNVDLAADLFAEAANKHLKT---IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS----IVTYNTLISV 235 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~li~~ 235 (513)
-.++-..|+.++|+.+|++....|..+ ...+-.+...+...|++++|+.+|++...+ .|+ ......+..+
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHHHHHHHHHH
Confidence 344556677777777777777766542 334445556666677777777777776654 233 1122223345
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 010320 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM 272 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 272 (513)
+...|+.++|++.+-.... ++...|.--|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 5666777777766655443 33334544444443
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.31 Score=42.58 Aligned_cols=133 Identities=7% Similarity=-0.052 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 010320 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA- 269 (513)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~- 269 (513)
.+.+.++..+.-.|.+.-....+++..+. .-+.+......|++.-.+.||.+.|...|++..+..-+.|..+++.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 35566666666677777777777777764 3355666667777777777888888888876665433344444444432
Q ss_pred ----HHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320 270 ----GYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 270 ----~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
.|.-.+++..|...|.+.....- -|....|.-.-+..-.|+..+|.+.++.|+..
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445667777777776665431 23444444333344456777777777777765
No 198
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.80 E-value=0.65 Score=46.31 Aligned_cols=52 Identities=6% Similarity=-0.046 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHhHH
Q 010320 441 YHSKMVMYASQRRVEEMESVLKEMEN-YKIDCSKKTFWIMYYAYATCGQRRKV 492 (513)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A 492 (513)
|..|..--...|.++.|.+.--.+.+ .++-|....|..|.-+.+....+...
T Consensus 1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtC 1076 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTC 1076 (1189)
T ss_pred HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhh
Confidence 33444444567888888876554443 24667788888777665555444333
No 199
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.77 E-value=0.55 Score=46.80 Aligned_cols=241 Identities=11% Similarity=0.067 Sum_probs=136.7
Q ss_pred CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 010320 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPS--------IVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP 259 (513)
Q Consensus 188 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 259 (513)
|.+..|..|.......-.++-|...|-+...-.|++.- ...-.+=|.+ --|.+++|++++-+|-.+.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh---
Confidence 45678888877766666677777766554432222111 0111111222 2478888888887776542
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHH
Q 010320 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV--MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337 (513)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 337 (513)
..|..+.+.|++-.+.++++.=-. +. +--...|+.+...++....+++|.++|...... ...
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 246667778888877777654211 11 111457788888888888888888887654321 234
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC
Q 010320 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN 417 (513)
Q Consensus 338 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 417 (513)
+.+|.+..++++.+ ...+.++++...-- .|..++...|..++|.+.|-+- ..| .+.+..|...+
T Consensus 829 ~ecly~le~f~~LE---~la~~Lpe~s~llp---~~a~mf~svGMC~qAV~a~Lr~-----s~p-----kaAv~tCv~Ln 892 (1189)
T KOG2041|consen 829 IECLYRLELFGELE---VLARTLPEDSELLP---VMADMFTSVGMCDQAVEAYLRR-----SLP-----KAAVHTCVELN 892 (1189)
T ss_pred HHHHHHHHhhhhHH---HHHHhcCcccchHH---HHHHHHHhhchHHHHHHHHHhc-----cCc-----HHHHHHHHHHH
Confidence 55666555554333 23334444332222 4778888888888888766331 111 13466777888
Q ss_pred cHHHHHHHHHHHHhcCCc-----------ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320 418 AVDKLANFVKRAESAGWR-----------LCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 418 ~~~~a~~~~~~~~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
++.+|.++-++..-..+. -+.. ..--|..+-+.|+.-+|.+++.+|.+
T Consensus 893 QW~~avelaq~~~l~qv~tliak~aaqll~~~~-~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQLPQVQTLIAKQAAQLLADAN-HMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHhhcc-hHHHHHHhhhcccchhHHHHHHHHhH
Confidence 888877776643211110 0001 11124556677777777777777754
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.73 E-value=0.011 Score=48.15 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=40.8
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH----hCCCCCCHHH
Q 010320 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK----EANISPSIVT 228 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~g~~p~~~~ 228 (513)
+...++..+...|++++|..+.+.+....+-+...|..+|.+|...|+..+|++.|+++.+ +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666677777777777777666555666777777777777777777777766532 2366666544
No 201
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.73 E-value=0.025 Score=50.19 Aligned_cols=102 Identities=14% Similarity=0.115 Sum_probs=70.1
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHH
Q 010320 199 AYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWG 278 (513)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 278 (513)
-+.+.+++++|+..|.+..+- .+-|.+-|..-..+|++.|.++.|++-.+..+.... --..+|..|-.+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHH
Confidence 356677788888888877752 234556666677778888888887777776665322 13467777778888888888
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010320 279 KVEEIYQMMKAGPVMPDTNTYLLLLRG 305 (513)
Q Consensus 279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~ 305 (513)
+|++.|++.++ +.|+-.+|-.=++.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 88888877776 66776666554443
No 202
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.72 E-value=0.049 Score=42.17 Aligned_cols=108 Identities=16% Similarity=-0.025 Sum_probs=72.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc--ccHhhHHHHHHHHH
Q 010320 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVT-TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR--LCRSLYHSKMVMYA 449 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~ 449 (513)
+..++-..|+.++|+.+|++.+..|...+ ....+-.+...+...|++++|..+++........ .+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 56677788999999999998888765443 2345666778888889999999999887654321 01122222344667
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320 450 SQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484 (513)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (513)
..|+.++|+..+-..... +...|.--|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 888999988888766542 3335555555554
No 203
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.69 E-value=0.52 Score=43.66 Aligned_cols=281 Identities=11% Similarity=0.047 Sum_probs=170.4
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhc--ccCCHHHHHHHHHHHHhccCCCHhH----HHHHHHHHHH
Q 010320 129 QLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAG--RINNVDLAADLFAEAANKHLKTIGT----YNALLGAYMY 202 (513)
Q Consensus 129 ~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~----~~~li~~~~~ 202 (513)
+-+++...|..+-..-.+. +.-|....-.++.+-. -.|+.+.|.+-|+.|.. ++++ ...|.-.--+
T Consensus 95 agAGda~lARkmt~~~~~l----lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAqr 166 (531)
T COG3898 95 AGAGDASLARKMTARASKL----LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQR 166 (531)
T ss_pred hccCchHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHHh
Confidence 3356777776655544322 3446666666666543 46889999999998876 3333 2333333456
Q ss_pred cCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHH---cc
Q 010320 203 NGLSDKCQSLFRDLKKEANISPS-IVTYNTLISVFGRLLLVDHMEAAFQEIKDSN-LSPNVF--TYNYLIAGYMT---AW 275 (513)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~li~~~~~---~g 275 (513)
.|..+.|...-+..-.. .|. ...+...+...|..|+|+.|+++++.-++.. +.++.. .-..|+.+-.. .-
T Consensus 167 ~GareaAr~yAe~Aa~~---Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 167 LGAREAARHYAERAAEK---APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred cccHHHHHHHHHHHHhh---ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 78888888888777643 344 3577888888999999999999988776532 344432 22333333221 22
Q ss_pred CHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh--hHHHH
Q 010320 276 MWGKVEEIYQMMKAGPVMPDT-NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT--DRIKK 352 (513)
Q Consensus 276 ~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~a~~ 352 (513)
+...|...-.+..+ +.||- ..-..-..++.+.|++.++-.+++.+-+....|++. .+..+.+.|+. +++..
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkR 317 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKR 317 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHH
Confidence 44455554444443 55663 333445678889999999999999998876555543 23345566653 23333
Q ss_pred HHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH-hcCcHHHHHHHHHHHHh
Q 010320 353 IEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF-RCNAVDKLANFVKRAES 431 (513)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~~~ 431 (513)
.+.+..|..++..+.. .+..+-...|++..|..--+.... ..| ....|..|.+.-. ..|+-.++.+.+.+..+
T Consensus 318 -a~~L~slk~nnaes~~--~va~aAlda~e~~~ARa~Aeaa~r--~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 318 -AKKLESLKPNNAESSL--AVAEAALDAGEFSAARAKAEAAAR--EAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred -HHHHHhcCccchHHHH--HHHHHHHhccchHHHHHHHHHHhh--hCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 2345666666665553 466777777888776654444333 222 3445655554433 34888888888887765
Q ss_pred c
Q 010320 432 A 432 (513)
Q Consensus 432 ~ 432 (513)
.
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 4
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.66 E-value=0.014 Score=40.82 Aligned_cols=56 Identities=5% Similarity=-0.045 Sum_probs=40.0
Q ss_pred HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010320 164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
.+|.+.+++++|.++++.+...++.+...|......+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666777777777777777766666777777777777777777777777777654
No 205
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.63 E-value=0.58 Score=43.47 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 010320 333 LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSS 412 (513)
Q Consensus 333 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 412 (513)
+.+..|.-+...|+...|.++.+.| .-++-.-|. ..+.+++..++|++..++-+. + ..| .-|.-++.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv~dkrfw~--lki~aLa~~~~w~eL~~fa~s---k-KsP---IGyepFv~~ 246 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KVPDKRFWW--LKIKALAENKDWDELEKFAKS---K-KSP---IGYEPFVEA 246 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CCcHHHHHH--HHHHHHHhcCCHHHHHHHHhC---C-CCC---CChHHHHHH
Confidence 3455566677788777666655444 333333342 689999999999998876432 1 222 237788999
Q ss_pred HHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010320 413 YFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEME 465 (513)
Q Consensus 413 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (513)
|...|+..+|..++.++ .+..-+..|.++|++.+|.+.--+..
T Consensus 247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 99999999999998872 23556788999999999988765544
No 206
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.068 Score=49.56 Aligned_cols=158 Identities=9% Similarity=-0.003 Sum_probs=96.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH--------
Q 010320 340 AYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIR--VYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCI-------- 409 (513)
Q Consensus 340 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------- 409 (513)
++.-.|+.+.+...--...++...+.... ++. ++--.++.+.|...|++.+..+....+..+....
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al----~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEAL----YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHH----HhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 34556777777666444445544443222 332 2334577888888888877755443333222222
Q ss_pred --HHHHHhcCcHHHHHHHHHHHHhc---CCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010320 410 --VSSYFRCNAVDKLANFVKRAESA---GWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYA 484 (513)
Q Consensus 410 --i~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 484 (513)
.+-..+.|++..|.+.|.+.+.. +.+++...|.-...+..+.|+.++|+.--++....+- -=...|..-..++.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l 332 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHL 332 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHH
Confidence 23345678999999999987643 3455666676666777889999999988887775431 01112222234455
Q ss_pred hcCCHhHHHHHHHHHHHC
Q 010320 485 TCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 485 ~~g~~~~A~~~~~~m~~~ 502 (513)
-.++|++|.+-+++..+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 677888888888776544
No 207
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.58 E-value=0.67 Score=43.59 Aligned_cols=169 Identities=12% Similarity=0.043 Sum_probs=98.0
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhcc---CC-CHhHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCCCCH
Q 010320 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKH---LK-TIGTYNALLGAYMY---NGLSDKCQSLFRDLKKEANISPSI 226 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~g~~p~~ 226 (513)
.+..+...++-.|-...+++..+++.+.+.... +. +..+-....-++-+ .|+.++|++++..+... .-.++.
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~ 217 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDP 217 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCCh
Confidence 344555567777899999999999999988752 11 33333344555666 78999999999985544 456788
Q ss_pred HHHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccC-HH---HHHHHH---HH-HHc
Q 010320 227 VTYNTLISVFGRL---------LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWM-WG---KVEEIY---QM-MKA 289 (513)
Q Consensus 227 ~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~---~a~~~~---~~-m~~ 289 (513)
.+|..+...|-.. ..++.|+..|.+--+. .||.++=-.+...+...|. .+ +..++- .. ..+
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR 295 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence 8888888776321 2356666666655442 2443321111112222222 11 222222 11 112
Q ss_pred CCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320 290 GPV---MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 290 ~g~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
.|. ..|-.-+.+++.++.-.|+.+.|.+..+.|.+.
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 222 234555666667777777777777777776665
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.54 E-value=0.053 Score=48.74 Aligned_cols=97 Identities=13% Similarity=-0.008 Sum_probs=60.3
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHH
Q 010320 190 IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLS--PNVFT 263 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~ 263 (513)
...|+..+..+.+.|++++|+..|+.+.+. .|+. ..+-.+...|...|++++|...|+.+.+.-.. .....
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 345666665556678888888888888765 3443 35666677777777777777777777653211 11233
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320 264 YNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
+-.+...+...|+.++|.++|++..+
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344555566677777777666655
No 209
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.15 Score=45.55 Aligned_cols=114 Identities=17% Similarity=0.028 Sum_probs=93.2
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCCCHHH
Q 010320 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG---LSDKCQSLFRDLKKEANISPSIVT 228 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~g~~p~~~~ 228 (513)
.|-|...|-.|..+|.+.|+++.|..-|.+..+...+|...+..+..++.... ...++..+|+++.+. -+-|+.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence 45599999999999999999999999999999987788888888887766543 357899999999964 3456667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010320 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269 (513)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 269 (513)
...|...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 7778889999999999999999999864 33444555554
No 210
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.46 E-value=0.052 Score=42.46 Aligned_cols=48 Identities=8% Similarity=0.188 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-ccCCCcHHHHHHHHH
Q 010320 292 VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH-HVDGKEFPLIRAMIC 339 (513)
Q Consensus 292 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~ 339 (513)
..|+..+..+++.+|+..|++..|.++.+...+ .+++.+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344555555555555555555555555554433 233334444554444
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.37 E-value=0.91 Score=42.73 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010320 366 RPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396 (513)
Q Consensus 366 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 396 (513)
.-|..+.++.++.-.|++++|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3344556777777788888888888887764
No 212
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.35 E-value=0.32 Score=39.12 Aligned_cols=43 Identities=9% Similarity=0.060 Sum_probs=21.5
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHc
Q 010320 161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYN 203 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~ 203 (513)
.++..+...+.......+++.+...+..+...+|.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence 3444444445555555555555544433444555555555543
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.30 E-value=0.019 Score=40.10 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=29.4
Q ss_pred HHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010320 412 SYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 412 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
.|.+.+++++|.++++++...+.. +...+......+.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445555555555555555544322 3444444555555555555555555555543
No 214
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.24 E-value=0.043 Score=48.10 Aligned_cols=115 Identities=10% Similarity=0.140 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHhcc-----cCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH
Q 010320 153 PMTKEEYTKGIKFAGR-----INNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI 226 (513)
Q Consensus 153 ~~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~ 226 (513)
.-|-.+|-..+..+.. .+.++-....++.|.+.|+. |..+|+.||..+-+..-.- ..+|+..-
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~~F--------- 132 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQKVF--------- 132 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHHHH---------
Confidence 3488888888888753 46788888888999999985 9999999888775533211 11121111
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH-HHHHHHHHHH
Q 010320 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW-GKVEEIYQMM 287 (513)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m 287 (513)
-.|- .+-+-++.++++|...|+.||..+-..|++++.+.+.. .+..++.-.|
T Consensus 133 -------~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 -------LHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred -------hhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 1111 12344778889999999999999988899888776643 2344444444
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.04 E-value=1.7 Score=43.18 Aligned_cols=77 Identities=12% Similarity=0.127 Sum_probs=44.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhh-----------HHHHHHH
Q 010320 379 KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL-----------YHSKMVM 447 (513)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-----------~~~li~~ 447 (513)
+...+..|-++|.+|-. ..++++.....+++.+|..+-+..-+ +.||+.. |.-.-.+
T Consensus 759 ~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkA 826 (1081)
T KOG1538|consen 759 KLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKA 826 (1081)
T ss_pred hccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHH
Confidence 34455666666655432 23455666667777777766665432 1122211 3333457
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 010320 448 YASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~ 467 (513)
|.+.|+-.+|..+++++...
T Consensus 827 fhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 827 FHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHhcchHHHHHHHHHhhhh
Confidence 77888888888888877654
No 216
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.04 E-value=0.36 Score=47.09 Aligned_cols=107 Identities=15% Similarity=0.132 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010320 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAG 270 (513)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 270 (513)
.-.+.++.-+-+.|..+.|+.+-.+-..+ .....+.|+++.|.++-++. .+...|..|...
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 34555666666666666666554443322 23344556666655554333 245556666666
Q ss_pred HHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320 271 YMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 271 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
..+.|+++-|++.|.+... |..|+-.|.-.|+.+.-.++.+.....
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6666666666666655433 445555555555555555555444444
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.02 E-value=0.89 Score=39.32 Aligned_cols=51 Identities=10% Similarity=0.173 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHhcCcHHHH
Q 010320 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSV-TTVRIMRCIVSSYFRCNAVDKL 422 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a 422 (513)
.+...|.+.|.+..|..-++.+++.-... ........++.+|.+.|..+.+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 36777888888888888888888753222 2223455667777777776644
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.00 E-value=0.027 Score=39.99 Aligned_cols=62 Identities=21% Similarity=0.173 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHcC----CC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010320 262 FTYNYLIAGYMTAWMWGKVEEIYQMMKAG----PV-MPD-TNTYLLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 262 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
.+|+.+...|...|++++|+..|++..+. |- .|+ ..++..+...+...|++++|++.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555666666666666666554431 11 122 4455566666666666666666665544
No 219
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.99 E-value=0.73 Score=38.10 Aligned_cols=124 Identities=10% Similarity=0.093 Sum_probs=62.1
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHH
Q 010320 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN---LSPNVFTYN 265 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~ 265 (513)
++..--.|..+....|+..+|...|++... +-..-|....-.+.++....++...|...++++.+.. -.|| +.-
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 333344455555666666666666666553 1223344455555555556666666666666655432 1222 222
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010320 266 YLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEK 317 (513)
Q Consensus 266 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 317 (513)
.+...+...|.+.+|+..|+..... -|+...-..-...+.+.|+.+++..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 3344555566666666666666552 3443333333333455555554433
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.99 E-value=0.019 Score=40.73 Aligned_cols=61 Identities=11% Similarity=0.057 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CC-ccc-HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010320 404 RIMRCIVSSYFRCNAVDKLANFVKRAESA----GW-RLC-RSLYHSKMVMYASQRRVEEMESVLKEM 464 (513)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (513)
.+|+.+...|...|++++|++.+++..+. |- .|+ ..+++.+...|...|++++|++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555666666666666665554321 11 111 334445555555555555555555543
No 221
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.97 E-value=0.94 Score=39.16 Aligned_cols=57 Identities=11% Similarity=0.094 Sum_probs=34.5
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320 269 AGYMTAWMWGKVEEIYQMMKAGPV--MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
..+...|++++|.+.|+.+...-- .--....-.++.++.+.|+++.|...++...+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566777777777777765311 111344556677777777777777777776664
No 222
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.86 E-value=0.56 Score=36.32 Aligned_cols=67 Identities=15% Similarity=0.350 Sum_probs=50.3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010320 438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505 (513)
Q Consensus 438 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 505 (513)
...+..-++.+...|+-+.-.+++.++...+ .+++...-.+..+|.+-|+..++.+++++.-+.|++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3445667788888999999999999987644 788888889999999999999999999999999874
No 223
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.86 E-value=0.053 Score=48.49 Aligned_cols=78 Identities=21% Similarity=0.191 Sum_probs=47.0
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH----hCCCCCCHHHHHHHH
Q 010320 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK----EANISPSIVTYNTLI 233 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~g~~p~~~~~~~li 233 (513)
++..+++.+...|+++.+.+.++++....+-+...|..+|.+|.+.|+...|+..|+++.+ ..|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4455566666666666666666666665555666666666666666666666666666543 235555555544444
Q ss_pred HH
Q 010320 234 SV 235 (513)
Q Consensus 234 ~~ 235 (513)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
No 224
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.86 E-value=0.15 Score=48.54 Aligned_cols=67 Identities=15% Similarity=-0.009 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCH---hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTI---GTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
.+.+...++.+..+|.+.|++++|+..|++..+..+.+. .+|..+..+|...|+.++|++.+++..+
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455788889999999999999999999999888776555 4599999999999999999999999886
No 225
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.77 E-value=0.93 Score=37.53 Aligned_cols=98 Identities=10% Similarity=-0.013 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc---CCCcHHHH
Q 010320 258 SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV---DGKEFPLI 334 (513)
Q Consensus 258 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~ 334 (513)
.|++..--.|..++.+.|+..+|...|++....-+--|......+.++....+++..|...++.+.+.. -.||..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~-- 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH-- 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch--
Confidence 455555555666666666666666666666554444456666666666666666666666666655432 222222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 010320 335 RAMICAYSKCSVTDRIKKIEALM 357 (513)
Q Consensus 335 ~~li~~~~~~g~~~~a~~~~~~~ 357 (513)
-.+...|...|...+|+.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a 186 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVA 186 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHH
Confidence 23344455555555555554443
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.76 E-value=0.37 Score=42.57 Aligned_cols=99 Identities=19% Similarity=0.173 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH-HHHHH
Q 010320 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI-VTYNT 231 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~ 231 (513)
...|+.-+.. .+.|++..|...|....+..+. ....+-.|...+...|++++|..+|..+.++++-.|-. ..+--
T Consensus 142 ~~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 142 TKLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred hHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4468777766 4667799999999999987764 46678889999999999999999999999875444443 67888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC
Q 010320 232 LISVFGRLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~ 255 (513)
|..+..+.|+.+.|..+|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888899999999999999999875
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=95.73 E-value=0.89 Score=37.06 Aligned_cols=91 Identities=9% Similarity=0.033 Sum_probs=70.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCC
Q 010320 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDC 382 (513)
Q Consensus 303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 382 (513)
..-+...|++++|..+|.-+...+. -+...+..|..++-..++++.|...+...-.+...+..|.. ....+|...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f--~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF--FTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc--hHHHHHHHhCC
Confidence 3344678899999999988776543 35556777888888888888888888877777777777764 37888999999
Q ss_pred HHHHHHHHHHHHhc
Q 010320 383 LEEMEKSINDAFEH 396 (513)
Q Consensus 383 ~~~a~~~~~~~~~~ 396 (513)
.+.|...|...+.+
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999988877763
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.72 E-value=0.7 Score=35.80 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=25.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 010320 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW 434 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 434 (513)
.+..+...|+-+.-.+++.++.+.+.. ++..+-.+..+|.+.|+..++.++++++-+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~~~--~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNEEI--NPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH-----S---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhhccCC--CHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344444555555555555554432111 233344455555555555555555555544443
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=95.71 E-value=0.46 Score=38.68 Aligned_cols=91 Identities=7% Similarity=-0.121 Sum_probs=65.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010320 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 452 (513)
...-+-..|++++|..+|.-+..-+ +.+..-|..|..+|-..+++++|...|......+. -|+..+-....+|...|
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 3444456789999999988777633 33455577788888888899999998887754443 23444455667888889
Q ss_pred CHHHHHHHHHHHHh
Q 010320 453 RVEEMESVLKEMEN 466 (513)
Q Consensus 453 ~~~~A~~~~~~m~~ 466 (513)
+.+.|...|+...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999998888876
No 230
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.69 E-value=1.1 Score=44.47 Aligned_cols=162 Identities=14% Similarity=0.170 Sum_probs=101.2
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhcc-CCC------HhHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCCCH
Q 010320 158 EYTKGIKFAGRINNVDLAADLFAEAANKH-LKT------IGTYNALLGAYMY----NGLSDKCQSLFRDLKKEANISPSI 226 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~------~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~ 226 (513)
.+..++...+=.|+-+.+++.+.+..+.+ +.. .-.|+.++..++. ....+.|.++++.+.++ -|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 34567777777888888888888765532 222 2345555554443 35678888888888876 4776
Q ss_pred HHHHHH-HHHHHhcCChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010320 227 VTYNTL-ISVFGRLLLVDHMEAAFQEIKDSNL---SPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302 (513)
Q Consensus 227 ~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 302 (513)
..|... .+.+...|++++|++.|++...... ......+--+.-++.-.++|++|.+.|..+.+.. .-+..+|.-+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 665443 3556777889999998887553110 1122334445556777788888888888888743 2234444444
Q ss_pred HHHH-HhcCCh-------HHHHHHHHHHH
Q 010320 303 LRGY-AHSGNL-------PRMEKIYELVK 323 (513)
Q Consensus 303 l~~~-~~~g~~-------~~a~~~~~~~~ 323 (513)
.-+| ...|+. ++|.++|.++.
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 4333 345555 66666666654
No 231
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.68 E-value=1.7 Score=39.92 Aligned_cols=131 Identities=14% Similarity=0.227 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHccC
Q 010320 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGR--LL----LVDHMEAAFQEIKDSNL---SPNVFTYNYLIAGYMTAWM 276 (513)
Q Consensus 206 ~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~ 276 (513)
+++.+.+++.|.+. |+.-+..+|-+....... .. ....|..+|+.|++... .++..++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 44566677777765 777777666553333332 22 24567778888887543 3455666666654 2233
Q ss_pred ----HHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcC-C--hHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010320 277 ----WGKVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSG-N--LPRMEKIYELVKHHVDGKEFPLIRAMIC 339 (513)
Q Consensus 277 ----~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g-~--~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (513)
.+.++.+|+.+.+.|+..+ ..-+.+-+-+++... . ...+.++++.+.+.|++.....|..+.-
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 2456677777777776654 222223233332222 1 3466777778888887776666654433
No 232
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.66 E-value=0.34 Score=46.31 Aligned_cols=65 Identities=11% Similarity=0.012 Sum_probs=58.2
Q ss_pred CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 010320 188 KTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLLVDHMEAAFQEIKDS 255 (513)
Q Consensus 188 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 255 (513)
.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 37899999999999999999999999998863 6774 35899999999999999999999999874
No 233
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.60 E-value=0.94 Score=36.38 Aligned_cols=128 Identities=11% Similarity=0.100 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010320 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 271 (513)
....++..+...+..+....+++.+... + ..+...+|.++..|++.+ .+...+.++. ..+......++..|
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHH
Confidence 3456777777778888888888888765 4 367778888888888764 3444444442 12334455577778
Q ss_pred HHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Q 010320 272 MTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS-GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343 (513)
Q Consensus 272 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (513)
.+.+.++++..++.++.. |...+..+... ++++.|.+++.+. .+...|..++..+..
T Consensus 80 ~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 888888888888877643 22233333333 6777777776641 244566666655543
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=1.6 Score=37.95 Aligned_cols=205 Identities=9% Similarity=0.089 Sum_probs=99.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Q 010320 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSK 343 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (513)
|.---.+|-...++++|...+.+..+. .+-+. .+-. ....++.|.-+.+++.+. +--+..|+.-...|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnr-slfh------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNR-SLFH------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcc-cHHH------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 333444566666677666655554421 11111 1111 122234444444444442 1123345556666777
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHh---c-CCCCchHHHHHHHHHHHHhcCcH
Q 010320 344 CSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE---H-KTSVTTVRIMRCIVSSYFRCNAV 419 (513)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~~~~~~li~~~~~~~~~ 419 (513)
+|..+-|-.+++...++ ..+.+.++|+++|++... . +...--...+..+-+.+.+...+
T Consensus 104 ~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred hCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 77766665554433322 223445555555554332 1 11111122345555566666666
Q ss_pred HHHHHHHHHHHh----cCCccc-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHhH
Q 010320 420 DKLANFVKRAES----AGWRLC-RSLYHSKMVMYASQRRVEEMESVLKEMENYK---IDCSKKTFWIMYYAYATCGQRRK 491 (513)
Q Consensus 420 ~~a~~~~~~~~~----~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~ 491 (513)
++|-..+.+-.. ..--++ -..|-..|-.|.-..++..|.+.++.--+.+ -.-+..+...|+.+|- .|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHH
Confidence 665544443211 111111 1234455556666778888888887744321 2335566777777774 466666
Q ss_pred HHHHH
Q 010320 492 VNQVL 496 (513)
Q Consensus 492 A~~~~ 496 (513)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 66554
No 235
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=1.5 Score=39.88 Aligned_cols=163 Identities=9% Similarity=-0.033 Sum_probs=116.7
Q ss_pred hcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCC
Q 010320 166 AGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSI----VTYNTLISVFGRLLL 241 (513)
Q Consensus 166 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~ 241 (513)
+-..|+..+|-..++++.+..+.|..+++--=.+|.-.|+.+.-...++++...+ .+|. ..-....-++..+|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhcc
Confidence 3467888889999999998766698899999999999999999999999987542 3444 333445566678899
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010320 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG---PVMPDTNTYLLLLRGYAHSGNLPRMEKI 318 (513)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 318 (513)
+++|++.-++..+.+. -|...-.++...+-..|++.++.+...+-... +--.-.+-|-...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999999998887653 36666777778888899999998876654331 1111123344444456677899999999
Q ss_pred HHH-HHhccCCCcH
Q 010320 319 YEL-VKHHVDGKEF 331 (513)
Q Consensus 319 ~~~-~~~~~~~~~~ 331 (513)
|+. |.+.-...|.
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 975 4443333344
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=1.5 Score=39.24 Aligned_cols=46 Identities=4% Similarity=-0.047 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC
Q 010320 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCN 417 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 417 (513)
.+...+...|+.++|.+.+-.++++...-.+...=..++..+.-.|
T Consensus 241 ~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 241 ALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3666666777777777766666655433333333444555444444
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=2 Score=38.61 Aligned_cols=143 Identities=13% Similarity=0.040 Sum_probs=90.1
Q ss_pred HHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 010320 164 KFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVD 243 (513)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 243 (513)
......|++.+|..+|+........+...--.+..+|...|+.+.|..++..+..+. -.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcCC
Confidence 345678888889998888887766677777788888889999999999998887541 1111122223445555555555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCC
Q 010320 244 HMEAAFQEIKDSNLSP-NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG--PVMPDTNTYLLLLRGYAHSGN 311 (513)
Q Consensus 244 ~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~ 311 (513)
+...+-.+.-.. | |...--.+...+...|+.++|.+.+-.+.+. |.. |...-..++..+.-.|.
T Consensus 221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 555555554432 4 5555566667777778888777765555442 332 44455556655555553
No 238
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.22 E-value=2.7 Score=39.26 Aligned_cols=131 Identities=13% Similarity=0.102 Sum_probs=85.9
Q ss_pred CCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cCCcc-cHh
Q 010320 362 EKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES-AGWRL-CRS 439 (513)
Q Consensus 362 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~p-~~~ 439 (513)
.++..|-. ..-..++.+.|+..++-.+++.+.+....|. ++ .+..+.+.|+. ++.-+++.++ ...+| +.+
T Consensus 259 ~pdlvPaa-v~AAralf~d~~~rKg~~ilE~aWK~ePHP~---ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnae 330 (531)
T COG3898 259 APDLVPAA-VVAARALFRDGNLRKGSKILETAWKAEPHPD---IA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAE 330 (531)
T ss_pred CCccchHH-HHHHHHHHhccchhhhhhHHHHHHhcCCChH---HH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchH
Confidence 34555542 2456788899999999999999988655443 22 23344555553 3343443321 12233 345
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHhHHHHHHHHHHHC
Q 010320 440 LYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC-GQRRKVNQVLGLMCKN 502 (513)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 502 (513)
.--.+..+-...|++..|..--+...+ ..|....|..|.+.-... |+-.++..++-+..+.
T Consensus 331 s~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 331 SSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 555667777788888888776666654 458888888888876655 9999999888877665
No 239
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.09 E-value=3.2 Score=39.49 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHH-HHHHHH
Q 010320 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSN-LSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTY-LLLLRG 305 (513)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~ll~~ 305 (513)
+|...|+...+...++.|..+|-+..+.| +.+++..++++|..++. |+...|.++|+.=... -||...| ...+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 34444444445555555555555555554 44455555555554433 4455555555442221 1232222 223333
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHhcCChhHHHHHHH
Q 010320 306 YAHSGNLPRMEKIYELVKHHVDGKE--FPLIRAMICAYSKCSVTDRIKKIEA 355 (513)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~ 355 (513)
+...++-+.|..+|+..+.. +..+ ...|..+|+--..-|++..+....+
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~ 526 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEE 526 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHH
Confidence 44455555555555533322 1111 2344444444444444444433333
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.01 E-value=2.7 Score=40.66 Aligned_cols=60 Identities=5% Similarity=-0.045 Sum_probs=37.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010320 265 NYLIAGYMTAWMWGKVEEIYQMMKAGP-VMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 265 ~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
..+..++-+.|+.++|++.|++|.+.. ..-+......|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 445555566777777777777776532 111234566677777777777777777766543
No 241
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.98 E-value=2.9 Score=38.42 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHH--c----CChHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC
Q 010320 171 NVDLAADLFAEAANKHLK-TIGTYNALLGAYMY--N----GLSDKCQSLFRDLKKEANI--SPSIVTYNTLISVFGRLLL 241 (513)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~~g~--~p~~~~~~~li~~~~~~g~ 241 (513)
.+++..++++.|.+.|+. +..+|-+....... . -...+|.++|+.|++.... .++-.++..|+.. ..++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 356678889999999986 65666553333333 2 2367899999999986321 3344566666554 3333
Q ss_pred ----hhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHccC--HHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010320 242 ----VDHMEAAFQEIKDSNLSPNVF--TYNYLIAGYMTAWM--WGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305 (513)
Q Consensus 242 ----~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 305 (513)
.+.++.+|+.+.+.|+..+.. ....++..+-.... ..++.++++.+.+.|+++....|..+.-.
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 356788899999888766443 33333333222211 45788999999999999888777665433
No 242
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.85 E-value=0.094 Score=32.22 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=21.6
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHH
Q 010320 158 EYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNAL 196 (513)
Q Consensus 158 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~l 196 (513)
++..+...|.+.|++++|.++|++..+..+.|...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 344555555566666666666666655554455555444
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.83 E-value=3.1 Score=38.04 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=11.4
Q ss_pred cccCCHHHHHHHHHHHHhc
Q 010320 167 GRINNVDLAADLFAEAANK 185 (513)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~ 185 (513)
.+.|+++.|..++.+....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~ 22 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDL 22 (278)
T ss_pred hhhCCHHHHHHHHHHhhhH
Confidence 3556666666666665543
No 244
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.82 E-value=2.6 Score=37.09 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 010320 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT 231 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~ 231 (513)
-...|+..+.- .+.|++++|.+.|+.+..+.+- ...+.-.++.++-+.+++++|+..+++..+..+-.||. -|-.
T Consensus 34 ~~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~ 111 (254)
T COG4105 34 ASELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAY 111 (254)
T ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHH
Confidence 34445544443 5778999999999998876652 45666677778888999999999999888776656665 3444
Q ss_pred HHHHHH
Q 010320 232 LISVFG 237 (513)
Q Consensus 232 li~~~~ 237 (513)
-|.+++
T Consensus 112 YlkgLs 117 (254)
T COG4105 112 YLKGLS 117 (254)
T ss_pred HHHHHH
Confidence 444443
No 245
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.82 E-value=1.3 Score=34.32 Aligned_cols=91 Identities=15% Similarity=0.095 Sum_probs=68.8
Q ss_pred HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCC
Q 010320 165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV---TYNTLISVFGRLLL 241 (513)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~---~~~~li~~~~~~g~ 241 (513)
+++..|+++.|++.|.+....-+.+...||.-..++--.|+.++|++=+++..+-.|-+ +.. .|.--...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 45788999999999998887666688899999999999999999999888887654433 222 33444455677788
Q ss_pred hhHHHHHHHHHHHCC
Q 010320 242 VDHMEAAFQEIKDSN 256 (513)
Q Consensus 242 ~~~A~~~~~~m~~~g 256 (513)
-+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888887776655
No 246
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.76 E-value=1.9 Score=35.29 Aligned_cols=133 Identities=11% Similarity=0.071 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCC--HhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHH-
Q 010320 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKT--IGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNT- 231 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~- 231 (513)
+...|..-++. ++.+..++|+.-|..+.+.|..+ +-.--.+.......|+...|...|+++-.. .-.|-..-=..
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHH
Confidence 33444444443 56666777777777777766542 222222234455667777777777777653 22222210011
Q ss_pred H--HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320 232 L--ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 232 l--i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
| .-.+...|.++++..-.+-+-..|-..-...-..|.-+-.+.|++.+|.+.|+.+..
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 1 112345556666555555554433322333344455555556666666666666554
No 247
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.73 E-value=4 Score=38.86 Aligned_cols=125 Identities=10% Similarity=0.030 Sum_probs=88.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhh-HHHHHHHHHhc
Q 010320 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL-YHSKMVMYASQ 451 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~li~~~~~~ 451 (513)
.+....+..-++.|..+|-+..+.+...+++.++++++..++ .|+...|..+|+.-... -||... .+-.+..+...
T Consensus 403 ~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~i 479 (660)
T COG5107 403 HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRI 479 (660)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHh
Confidence 455555667789999999998888866677888899988654 57788888888843322 133333 35667777888
Q ss_pred CCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320 452 RRVEEMESVLKEMENYKIDCS--KKTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
++-+.|..+|+...++ +..+ ...|..+|..-..-|+...+..+-++|.+
T Consensus 480 nde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 480 NDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred CcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 9999999999854432 1222 45788899888888888777766666543
No 248
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.59 E-value=3.1 Score=37.35 Aligned_cols=132 Identities=9% Similarity=-0.036 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHhc--cCCCHhHHHHHHHHHHH-cC-ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010320 171 NVDLAADLFAEAANK--HLKTIGTYNALLGAYMY-NG-LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246 (513)
Q Consensus 171 ~~~~a~~~~~~m~~~--~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 246 (513)
.+-+|+.+|+..... =+.|..+...+++.... .+ ....--++.+-+....|-.++..+...+|..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 344555555522211 11355566666665555 21 222233333334433344566666666666666666666666
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHHccCHHHHHHHHHH-----HHcCCCCCCHHHHHHH
Q 010320 247 AAFQEIKDS-NLSPNVFTYNYLIAGYMTAWMWGKVEEIYQM-----MKAGPVMPDTNTYLLL 302 (513)
Q Consensus 247 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~p~~~t~~~l 302 (513)
++++..... +..-|...|..+|......|+..-..++.++ +++.|+..+...-..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL 284 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence 666665543 4445666666666666666666555555544 2334444444443333
No 249
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.59 E-value=6.5 Score=40.60 Aligned_cols=150 Identities=11% Similarity=0.061 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHh----cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 010320 155 TKEEYTKGIKFA----GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYN 230 (513)
Q Consensus 155 ~~~~~~~ll~~~----~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~ 230 (513)
|......+...| .+.|++++|...|-+-... -++ ..+|.-|....+..+-..+++.+.+. |+ .+...-.
T Consensus 363 d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~---s~Vi~kfLdaq~IknLt~YLe~L~~~-gl-a~~dhtt 435 (933)
T KOG2114|consen 363 DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP---SEVIKKFLDAQRIKNLTSYLEALHKK-GL-ANSDHTT 435 (933)
T ss_pred CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh---HHHHHHhcCHHHHHHHHHHHHHHHHc-cc-ccchhHH
Confidence 444444444443 3566666666655543321 111 23445555555566666666666654 43 3444556
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010320 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 310 (513)
.|+.+|.+.++.+.-.++.+... .|..- .-....+..+.+.+-.++|..+-..... .......++ -..+
T Consensus 436 lLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ 504 (933)
T KOG2114|consen 436 LLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLH 504 (933)
T ss_pred HHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhc
Confidence 67777777777766665555443 22210 0123344445555555555544443322 222333333 3456
Q ss_pred ChHHHHHHHHHH
Q 010320 311 NLPRMEKIYELV 322 (513)
Q Consensus 311 ~~~~a~~~~~~~ 322 (513)
++++|.+++..+
T Consensus 505 ny~eAl~yi~sl 516 (933)
T KOG2114|consen 505 NYEEALRYISSL 516 (933)
T ss_pred CHHHHHHHHhcC
Confidence 777777776543
No 250
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.58 E-value=3.6 Score=37.63 Aligned_cols=166 Identities=12% Similarity=0.119 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010320 332 PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE-YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIV 410 (513)
Q Consensus 332 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 410 (513)
.+...++.+|...+..+...++.+.++.+.... ..+..+..-+..+.+.++.+++.+++.+|+..-..+ ...+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~--e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS--ESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc--cchHHHHH
Confidence 467788888888888887777777666653322 122223345677777889999999999999864322 12244455
Q ss_pred HHHHh--cCcHHHHHHHHHHHHhcCCcccHh-hHHHH-HH---HHHhcC------CHHHHHHHHHHHHh-CCCCCCHHHH
Q 010320 411 SSYFR--CNAVDKLANFVKRAESAGWRLCRS-LYHSK-MV---MYASQR------RVEEMESVLKEMEN-YKIDCSKKTF 476 (513)
Q Consensus 411 ~~~~~--~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l-i~---~~~~~g------~~~~A~~~~~~m~~-~~~~p~~~~~ 476 (513)
..+.. ......|...+..+....+.|... ....+ +. ...+.+ +++...++++...+ .+.+.+..+-
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 44422 223345666666665444444443 11111 11 111221 25555555654332 2223333332
Q ss_pred H---HHH----HHHHhcCCHhHHHHHHHHH
Q 010320 477 W---IMY----YAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 477 ~---~li----~~~~~~g~~~~A~~~~~~m 499 (513)
. +++ ..+.+.++|+.|.++|+--
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 2 333 3456789999999999854
No 251
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.57 E-value=6.5 Score=40.56 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=25.2
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHc
Q 010320 161 KGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYN 203 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~ 203 (513)
.+|-.|.|+|++++|.++..+....--.....+-..+..|+..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 3555667778888887777554443223445666666666654
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.56 E-value=0.65 Score=45.31 Aligned_cols=133 Identities=13% Similarity=0.118 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010320 156 KEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISV 235 (513)
Q Consensus 156 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~ 235 (513)
....+.++..+-+.|..+.|+++-..-. .-.....+.|+.+.|.++.++. .+...|..|.+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~-----------~rFeLAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD-----------HRFELALQLGNLDIALEIAKEL-------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH-----------HHHHHHHHCT-HHHHHHHCCCC-------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH-----------HHhHHHHhcCCHHHHHHHHHhc-------CcHHHHHHHHHH
Confidence 5557888889999999999988766532 2345567789999888765433 367799999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010320 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 315 (513)
..+.|+++-|++.|++..+ |..|+-.|.-.|+.+...++.+.....| -++....++.-.|++++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence 9999999999999988764 6777778888898888888887777766 256666667777888887
Q ss_pred HHHHHH
Q 010320 316 EKIYEL 321 (513)
Q Consensus 316 ~~~~~~ 321 (513)
.+++.+
T Consensus 422 v~lL~~ 427 (443)
T PF04053_consen 422 VDLLIE 427 (443)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 253
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.55 E-value=4.5 Score=38.63 Aligned_cols=72 Identities=10% Similarity=0.057 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCC----CcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHH
Q 010320 300 LLLLRGYAHSGNLPRMEKIYELVKHHVDG----KEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIR 375 (513)
Q Consensus 300 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 375 (513)
+..+.++...|++.+++.+++++...-.+ -+..+|+.++-++++. .+-.+.+....++.|.+|. |+.
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyYe-mil 202 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPDYYE-MIL 202 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChHHHH-HHH
Confidence 45566677778888887777777654333 5777777766666653 2222233334445555453 555
Q ss_pred HHHhc
Q 010320 376 VYAKE 380 (513)
Q Consensus 376 ~~~~~ 380 (513)
.|.+.
T Consensus 203 fY~kk 207 (549)
T PF07079_consen 203 FYLKK 207 (549)
T ss_pred HHHHH
Confidence 55443
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.53 E-value=3.1 Score=38.37 Aligned_cols=44 Identities=14% Similarity=0.114 Sum_probs=22.2
Q ss_pred ccCCHHHHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCChHHHHH
Q 010320 168 RINNVDLAADLFAEAANKHLK---TIGTYNALLGAYMYNGLSDKCQS 211 (513)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 211 (513)
...+.++|+..|.+...+--. -..+|..+..+.++.|.+++++.
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 445556666666554442110 23445555556666665555544
No 255
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.98 E-value=2.6 Score=34.23 Aligned_cols=51 Identities=18% Similarity=0.029 Sum_probs=24.2
Q ss_pred ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
+.++.+++..+++.+.-..+.....-..-...+.+.|++.+|+.+|+++..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 445555555555555544333222222222334455555555555555543
No 256
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.97 E-value=2.8 Score=38.68 Aligned_cols=127 Identities=10% Similarity=0.063 Sum_probs=78.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHh----cCCcccHhhHHH
Q 010320 372 LLIRVYAKEDCLEEMEKSINDAFEHK----TSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAES----AGWRLCRSLYHS 443 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~~~~~~~ 443 (513)
.|..++.-.+.++++++.|+...+-. ...-...++-.|-..|.+..++++|.-+..+..+ .++.--..-|..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 46666777778888888887766522 2222344677888888888999988877776532 222211112222
Q ss_pred -----HHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 010320 444 -----KMVMYASQRRVEEMESVLKEMEN----YKIDC-SKKTFWIMYYAYATCGQRRKVNQVLGL 498 (513)
Q Consensus 444 -----li~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 498 (513)
+..++-..|..-+|.+.-++..+ .|-++ -......+.+.|...|+.|.|+.-|++
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 33455667777777777665543 23222 233445677888888988888776665
No 257
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.95 E-value=0.77 Score=41.28 Aligned_cols=78 Identities=12% Similarity=0.050 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc-----CCCCCCHHHHHH
Q 010320 227 VTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-----GPVMPDTNTYLL 301 (513)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~ 301 (513)
.++..++..+...|+.+.+.+.++++.+... -|...|..+|.+|.+.|+...|+..|+.+.+ -|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4667788888888899999999999888754 3888899999999999999999998888765 477777766665
Q ss_pred HHHH
Q 010320 302 LLRG 305 (513)
Q Consensus 302 ll~~ 305 (513)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 258
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=1.8 Score=40.59 Aligned_cols=92 Identities=3% Similarity=-0.067 Sum_probs=41.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 010320 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY 413 (513)
Q Consensus 334 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 413 (513)
+..+.-+|.+.+++..|.+.-....++.+++....+ .-..+|...|+++.|...|+++++ ..|.+..+-+.++..-
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy--RrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY--RRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLK 335 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH--HHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHH
Confidence 334444455555555544444444444444444432 244555555555555555555555 2333333333444333
Q ss_pred HhcCcHHH-HHHHHHHH
Q 010320 414 FRCNAVDK-LANFVKRA 429 (513)
Q Consensus 414 ~~~~~~~~-a~~~~~~~ 429 (513)
.+...... ..++|..|
T Consensus 336 ~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33332222 23444444
No 259
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.88 E-value=2.1 Score=34.11 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=51.8
Q ss_pred cCchhHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHH
Q 010320 117 HSNGYAFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYN 194 (513)
Q Consensus 117 ~p~~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~ 194 (513)
.|....|.....++ .++++.|.+.|+.+..+--.| +....+.-.++.+|.+.+++++|...+++..+..+. ....|.
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g-~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG-EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 34555666666666 457777777777776653222 234555666777777777777777777777776654 234455
Q ss_pred HHHHHHHH
Q 010320 195 ALLGAYMY 202 (513)
Q Consensus 195 ~li~~~~~ 202 (513)
..+.+++.
T Consensus 87 ~Y~~gL~~ 94 (142)
T PF13512_consen 87 YYMRGLSY 94 (142)
T ss_pred HHHHHHHH
Confidence 55555443
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.70 E-value=8.1 Score=38.39 Aligned_cols=117 Identities=13% Similarity=0.101 Sum_probs=67.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHH-HHHHHHhcCcHHHHHHHHHHHHhc--CCc-ccHhhHHHHHHHHHhcCCHH
Q 010320 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRC-IVSSYFRCNAVDKLANFVKRAESA--GWR-LCRSLYHSKMVMYASQRRVE 455 (513)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~~~~~--~~~-p~~~~~~~li~~~~~~g~~~ 455 (513)
....+.|.+++..+..+- |. ...|.. -.+.+...|++++|.+.+++.... .++ .....+--+.-.+.-..+|+
T Consensus 246 ~~~~~~a~~lL~~~~~~y--P~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--PN-SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 346777778887777642 22 222322 234455678888888888865421 111 11222333445566788888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCH-------hHHHHHHHHHH
Q 010320 456 EMESVLKEMENYKIDCSKKTFWIMYY-AYATCGQR-------RKVNQVLGLMC 500 (513)
Q Consensus 456 ~A~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~-------~~A~~~~~~m~ 500 (513)
+|.+.|..+.+.+ .-+..+|..+.. ++...|+. ++|.++|++..
T Consensus 323 ~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 323 EAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 8888888888765 334444543332 33456666 77777777653
No 261
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.68 E-value=9.3 Score=39.01 Aligned_cols=304 Identities=11% Similarity=0.049 Sum_probs=164.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCH--HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHH
Q 010320 132 SRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNV--DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKC 209 (513)
Q Consensus 132 ~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~--~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A 209 (513)
+.+..|.++-.|+...... ...+|......+.+..+. +++.+..++=.........+|..+.+-...+|+.+.|
T Consensus 451 ~~Y~vaIQva~~l~~p~~~----~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA 526 (829)
T KOG2280|consen 451 HLYSVAIQVAKLLNLPESQ----GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELA 526 (829)
T ss_pred chhHHHHHHHHHhCCcccc----ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHH
Confidence 4566677777776433211 145666666666655322 2233333322221123567888888888899999999
Q ss_pred HHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----------CCCCHHHHHHHHH-----
Q 010320 210 QSLFRDLKKEANI----SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN-----------LSPNVFTYNYLIA----- 269 (513)
Q Consensus 210 ~~~~~~m~~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~~~~~~li~----- 269 (513)
..+++.=... +. -.+..-+...+.-+.+.|+.+....++-+|.+.- ..-....|--++.
T Consensus 527 ~kLle~E~~~-~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~ 605 (829)
T KOG2280|consen 527 RKLLELEPRS-GEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRA 605 (829)
T ss_pred HHHHhcCCCc-cchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchh
Confidence 9887643221 11 0122345566777788888888887777666421 0111122222222
Q ss_pred ---HHHHccCHHHHHHHH--HHH----HcCCCCCCHHHHHHHHHHHHhcCChHHH----------HHHHHHHHh-ccCCC
Q 010320 270 ---GYMTAWMWGKVEEIY--QMM----KAGPVMPDTNTYLLLLRGYAHSGNLPRM----------EKIYELVKH-HVDGK 329 (513)
Q Consensus 270 ---~~~~~g~~~~a~~~~--~~m----~~~g~~p~~~t~~~ll~~~~~~g~~~~a----------~~~~~~~~~-~~~~~ 329 (513)
.+.+.++-.++..-| +.- ...|..|+ .....++|.+.....-. +++.+.+.. .|...
T Consensus 606 ~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f 682 (829)
T KOG2280|consen 606 TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSF 682 (829)
T ss_pred hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 011111111111111 110 01122233 23334445444432211 122222222 23333
Q ss_pred cHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010320 330 EFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCI 409 (513)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 409 (513)
...+.+..+.-+...|+..+|+++...| .-++-.-|- .-+.+++..+++++-+++-+.+.. | . -|.-+
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~F---kipdKr~~w--Lk~~aLa~~~kweeLekfAkskks----P--I-Gy~PF 750 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDF---KIPDKRLWW--LKLTALADIKKWEELEKFAKSKKS----P--I-GYLPF 750 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhc---CCcchhhHH--HHHHHHHhhhhHHHHHHHHhccCC----C--C-CchhH
Confidence 3344556666777778777666665544 333322221 468889999999998776544322 2 1 26778
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010320 410 VSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEM 464 (513)
Q Consensus 410 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (513)
+.+|.+.|+.++|.+++.+... . .-.+.+|.+.|++.+|.++--+-
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHHHh
Confidence 8999999999999999886531 1 14678899999999998875443
No 262
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=1.9 Score=40.51 Aligned_cols=90 Identities=10% Similarity=-0.013 Sum_probs=44.3
Q ss_pred HHHhcccCCHHHHHHHHHHHHhc-c----CC----------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 010320 163 IKFAGRINNVDLAADLFAEAANK-H----LK----------TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV 227 (513)
Q Consensus 163 l~~~~~~g~~~~a~~~~~~m~~~-~----~~----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 227 (513)
-..|.+.|++..|...|+..... + .+ -..+++.|..+|.+.+++.+|++.-++.+.. -++|+-
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~N~K 292 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--DPNNVK 292 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCCchh
Confidence 34567888888888888875431 0 00 0223444444444444444444444444432 133333
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010320 228 TYNTLISVFGRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (513)
..---..++...|+++.|+..|+++++
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 444444444444444444444444444
No 263
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.56 E-value=2.6 Score=32.69 Aligned_cols=93 Identities=6% Similarity=-0.009 Sum_probs=71.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH---hhHHHHHHHHHh
Q 010320 374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR---SLYHSKMVMYAS 450 (513)
Q Consensus 374 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~ 450 (513)
.-++...|+++.|++.|.+.+. ..|.....||.-..++.-.|+.++|++=+++..+..-.-+. ..|..-...|-.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3456788999999999999887 55666778999999999999999999999887654321121 224444456777
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 010320 451 QRRVEEMESVLKEMENYK 468 (513)
Q Consensus 451 ~g~~~~A~~~~~~m~~~~ 468 (513)
.|+-+.|..=|+..-+.|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 899999999998888777
No 264
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.45 E-value=2.8 Score=37.27 Aligned_cols=102 Identities=13% Similarity=-0.007 Sum_probs=82.6
Q ss_pred HHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC---CHhHHHHHH
Q 010320 122 AFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALL 197 (513)
Q Consensus 122 ~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li 197 (513)
.|...+..+ .++...|.+.|....+.--. -......+--|...+...|+++.|..+|..+.+..+. -+..+--|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN-STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 699888887 66888999888877665321 2345667778999999999999999999999987653 467888888
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCCHH
Q 010320 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIV 227 (513)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 227 (513)
.+..+.|+.++|..+|+++.++ -|+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~---YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR---YPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH---CCCCH
Confidence 9999999999999999999987 36543
No 265
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=7.4 Score=36.75 Aligned_cols=183 Identities=11% Similarity=-0.024 Sum_probs=101.2
Q ss_pred CCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HccCHHHHHHHHHHHHcCCCCCCHHHHH
Q 010320 224 PSIVTYNTLI-SVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYM--TAWMWGKVEEIYQMMKAGPVMPDTNTYL 300 (513)
Q Consensus 224 p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 300 (513)
|...+|-.+- .++.-.|+.++|..+--..++.. .+..+...+++.+ -.++.+.+...|++-+..+ |+...-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 4444454433 34556788888887766666532 2334555554433 3567888888888877643 5432222
Q ss_pred H---H----------HHHHHhcCChHHHHHHHHHHHhc---cCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 010320 301 L---L----------LRGYAHSGNLPRMEKIYELVKHH---VDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKE 364 (513)
Q Consensus 301 ~---l----------l~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 364 (513)
. . .+-..+.|++..|.+.|.+.+.. ...+++..|........+.|+.+++..--.....+...-
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 1 1 22345788899999999888763 334455566666666777787665544333222221111
Q ss_pred cccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 010320 365 YRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY 413 (513)
Q Consensus 365 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 413 (513)
+.+ +..-..++...++|++|.+-|+...+....+....++.-...++
T Consensus 321 ika--ll~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aL 367 (486)
T KOG0550|consen 321 IKA--LLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLAL 367 (486)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 111 11122334445778888888887766544433344443333333
No 266
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.19 E-value=11 Score=39.14 Aligned_cols=175 Identities=8% Similarity=0.039 Sum_probs=89.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 010320 230 NTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI----AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRG 305 (513)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 305 (513)
..-|+..++...++.|+.+-+.- +. |..+...++ +-+.+.|++++|...|-+-... +.| ..+|.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~---~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ---HL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc---CC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 34455555555666665554332 22 222222333 3344577777777766554331 122 223444
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHH
Q 010320 306 YAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEE 385 (513)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 385 (513)
|....++..-..+++.+.+.|.. +...-+.|+.+|.+.++.++..+.. .... .+..-......+..+.+.+-.++
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI---~~~~-~g~~~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFI---SKCD-KGEWFFDVETALEILRKSNYLDE 481 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHH---hcCC-CcceeeeHHHHHHHHHHhChHHH
Confidence 45555555556666666666654 3334467777777777666443332 2222 22222112246666677777777
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010320 386 MEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429 (513)
Q Consensus 386 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 429 (513)
|..+-.+... .......+ +-..+++++|++++..+
T Consensus 482 a~~LA~k~~~------he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK------HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc------CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 7655433211 12223333 33567778887777754
No 267
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.17 E-value=8.9 Score=37.30 Aligned_cols=155 Identities=10% Similarity=0.094 Sum_probs=88.8
Q ss_pred HccCHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHH
Q 010320 273 TAWMWGKVEEIYQMMKAGPVMPDT-NTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIK 351 (513)
Q Consensus 273 ~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 351 (513)
+..+...-+++-++..+ +.||- ..|..|.. -....+.++++++++..+.|-.. .-...... ..|.
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~--lg~s~~~~---~~g~----- 245 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEAS--LGKSQFLQ---HHGH----- 245 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHh--hchhhhhh---cccc-----
Confidence 34455555555555555 34553 33333222 23445788888988877754210 00000111 1110
Q ss_pred HHHHHHHhCCCCCcc--cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010320 352 KIEALMRLIPEKEYR--PWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429 (513)
Q Consensus 352 ~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 429 (513)
..+ ....++.. ......+..++-+.|+.++|++.++++.+.....+...+...|+.++...+.+.++..++.+-
T Consensus 246 -~~e---~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 246 -FWE---AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred -hhh---hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 011 11122222 222224777778899999999999999876544456667888999999999999999999987
Q ss_pred HhcCCccc-HhhHHHHH
Q 010320 430 ESAGWRLC-RSLYHSKM 445 (513)
Q Consensus 430 ~~~~~~p~-~~~~~~li 445 (513)
.+...+.+ ...|+..+
T Consensus 322 dDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 322 DDISLPKSATICYTAAL 338 (539)
T ss_pred ccccCCchHHHHHHHHH
Confidence 65433222 34466544
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.79 E-value=0.46 Score=29.09 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010320 441 YHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
+..+...|.+.|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555565555555554
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.29 E-value=0.35 Score=28.06 Aligned_cols=26 Identities=12% Similarity=-0.000 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320 475 TFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677788888888888888887743
No 270
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.23 E-value=7.7 Score=34.24 Aligned_cols=185 Identities=11% Similarity=0.051 Sum_probs=118.3
Q ss_pred cCchhHHHHHHHHH-cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHH
Q 010320 117 HSNGYAFVELMKQL-GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYN 194 (513)
Q Consensus 117 ~p~~~~~~~~l~~~-~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~ 194 (513)
.|-...|+..+..+ .++++.|..-|+.+..+.- +-+....+.-.++-++-+.++.+.|+..+++.....+. ....|-
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHP-FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 56777899999988 5699999999999987643 24456777788888999999999999999999987764 444566
Q ss_pred HHHHHHHHc-------CCh---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-
Q 010320 195 ALLGAYMYN-------GLS---DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT- 263 (513)
Q Consensus 195 ~li~~~~~~-------g~~---~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~- 263 (513)
.-|.+++.- ++. .+|+.-|+++.++ -||.. -..+|..-...+.. ...
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r---yPnS~-------------Ya~dA~~~i~~~~d------~LA~ 168 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR---YPNSR-------------YAPDAKARIVKLND------ALAG 168 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH---CCCCc-------------chhhHHHHHHHHHH------HHHH
Confidence 666665542 233 3444445555544 24431 11222222222211 000
Q ss_pred H-HHHHHHHHHccCHHHHHHHHHHHHcCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320 264 Y-NYLIAGYMTAWMWGKVEEIYQMMKAGPVMP---DTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 264 ~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
+ -.+...|.+.|.+..|..-+++|.+. ..- .....-.+..+|...|-.++|.+.-+-+...
T Consensus 169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 169 HEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 1 12445677888888888888888775 211 2345556677788888888777766555543
No 271
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.17 E-value=2.3 Score=35.72 Aligned_cols=60 Identities=15% Similarity=0.167 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 010320 228 TYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN--VFTYNYLIAGYMTAWMWGKVEEIYQMM 287 (513)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m 287 (513)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|....-.|++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344444445555555555555555444322221 223344444444455555555444443
No 272
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.06 E-value=16 Score=37.57 Aligned_cols=104 Identities=10% Similarity=0.158 Sum_probs=70.9
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010320 162 GIKFAGRINNVDLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRL 239 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 239 (513)
-++.+.+.+.+++|+++-+.....-.. ....+...|..+.-.|++++|-...-.|... +..-|--.+..+...
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn-----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN-----NAAEWELWVFKFAEL 436 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc-----hHHHHHHHHHHhccc
Confidence 467778888899998887766543222 3567888888899999999999988888753 666777777777766
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010320 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273 (513)
Q Consensus 240 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 273 (513)
++.... +.-+.......+...|..++..+..
T Consensus 437 ~~l~~I---a~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDI---APYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchh---hccCCCCCcccCchHHHHHHHHHHH
Confidence 665542 3333332223455667777776666
No 273
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.00 E-value=21 Score=38.73 Aligned_cols=82 Identities=15% Similarity=0.070 Sum_probs=42.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcC
Q 010320 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQR 452 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 452 (513)
-+.+|..+|+|.+|+.+-.++...... ...+-..|+.-+...++.-+|-+++.+... . +.-.+..|++..
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~de--~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---d-----~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGKDE--LVILAEELVSRLVEQRKHYEAAKILLEYLS---D-----PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCHHH--HHHHHHHHHHHHHHcccchhHHHHHHHHhc---C-----HHHHHHHHhhHh
Confidence 455666667777777666554332111 111123455556666666666666554431 1 122344566666
Q ss_pred CHHHHHHHHHHH
Q 010320 453 RVEEMESVLKEM 464 (513)
Q Consensus 453 ~~~~A~~~~~~m 464 (513)
.|++|..+...-
T Consensus 1041 ~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1041 EWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHHhc
Confidence 666666655433
No 274
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.96 E-value=8.4 Score=34.10 Aligned_cols=230 Identities=11% Similarity=0.074 Sum_probs=144.2
Q ss_pred cccCchhHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhc---cC-
Q 010320 115 RRHSNGYAFVELMKQL---GSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK---HL- 187 (513)
Q Consensus 115 ~~~p~~~~~~~~l~~~---~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~- 187 (513)
+..||+..=+..-.+- ...|+.|+.-|+.+.+..+..-..--.+...+|..+.+.|++++..+.+.++... .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3466766655554333 2478889999998887754333334557778899999999999999999987642 11
Q ss_pred C--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---
Q 010320 188 K--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV----TYNTLISVFGRLLLVDHMEAAFQEIKDSNLS--- 258 (513)
Q Consensus 188 ~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--- 258 (513)
. +..+-|+++.....+.+.+.-.++|+.-.....-.-|.. |-+-|...|...|.+....++++++.+..-.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 1 456778888888888888777777764332100011222 3345777788888888888888888643211
Q ss_pred --------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH-----HhcCChHHHHH-HHHHHH
Q 010320 259 --------PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA-GPVMPDTNTYLLLLRGY-----AHSGNLPRMEK-IYELVK 323 (513)
Q Consensus 259 --------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~-----~~~g~~~~a~~-~~~~~~ 323 (513)
.=...|..=|..|....+-.+...+|++... ..-.|.+.... +|+-| .+.|++++|.. +|+..+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHh
Confidence 1135677778888888888888888887654 22334443333 34433 46778887754 444444
Q ss_pred h---ccCCCcH--HHHHHHHHHHHhcC
Q 010320 324 H---HVDGKEF--PLIRAMICAYSKCS 345 (513)
Q Consensus 324 ~---~~~~~~~--~~~~~li~~~~~~g 345 (513)
. .|.+... --|-.|.+++.+.|
T Consensus 260 NYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 260 NYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred cccccCCcchhHHHHHHHHHHHHHHcC
Confidence 3 3432222 23445555666554
No 275
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.93 E-value=5.5 Score=31.89 Aligned_cols=52 Identities=12% Similarity=-0.049 Sum_probs=29.3
Q ss_pred ccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010320 168 RINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 168 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
..++.+++..+++.|.-..+.....-..-...+...|++++|+++|+++..+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3666667777776666544432222222233345667777777777776653
No 276
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.89 E-value=0.23 Score=28.46 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=19.8
Q ss_pred HHHHHhccCCCHhHHHHHHHHHHHcCChHHHH
Q 010320 179 FAEAANKHLKTIGTYNALLGAYMYNGLSDKCQ 210 (513)
Q Consensus 179 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~ 210 (513)
|++..+..+.+..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444444446677777777777777776664
No 277
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.63 E-value=4.9 Score=32.03 Aligned_cols=75 Identities=9% Similarity=-0.079 Sum_probs=40.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010320 376 VYAKEDCLEEMEKSINDAFEHKTS-VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450 (513)
Q Consensus 376 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 450 (513)
...+.|++++|.+.|+.+..+-.. +-....--.++.+|.+.+++++|...+++..+.....-..-|...+.+++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 344556666776666666553211 112223345666666777777777766666654433223335555555443
No 278
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.56 E-value=8.4 Score=33.30 Aligned_cols=225 Identities=8% Similarity=-0.064 Sum_probs=108.8
Q ss_pred cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 010320 239 LLLVDHMEAAFQEIKDSNLS-PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAG-PVMPDTNTYLLLLRGYAHSGNLPRME 316 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~ 316 (513)
.+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35555566666665543321 12456666667777777777777777666542 22334556666666666666777777
Q ss_pred HHHHHHHhccCCCcHHHHHHHHH-HHHhcCChhHHHHHHHHHHhCCCC-CcccchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010320 317 KIYELVKHHVDGKEFPLIRAMIC-AYSKCSVTDRIKKIEALMRLIPEK-EYRPWLNVLLIRVYAKEDCLEEMEKSINDAF 394 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 394 (513)
+.+.........+. ........ .+...|+++.+...+......... .............+...++.+.+...+.+..
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 77776665433321 11111222 455566555555554443221111 0000101112222344556666666665555
Q ss_pred hcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320 395 EHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 395 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
...... ....+..+...+...++.+.+...+......... ....+..+...+...+..+++...+.+...
T Consensus 195 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLNPDD-DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhCccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 532211 2333444555555555555555555555433221 122222222233344455555555555544
No 279
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.30 E-value=19 Score=36.78 Aligned_cols=87 Identities=14% Similarity=0.053 Sum_probs=42.2
Q ss_pred HhcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 010320 237 GRLLLVDHMEAAFQEIKD-------SNLSPNVFTYNYLIAGYMTAW-----MWGKVEEIYQMMKAGPVMPDTNTYLLLLR 304 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 304 (513)
+...+.+.|+..|+...+ .| +....+-+..+|.+.. +.+.|..+|.+.-+.| .|+.......+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 344566666666666654 33 2223444444444422 4455666666665555 234333332222
Q ss_pred HHHh-cCChHHHHHHHHHHHhccC
Q 010320 305 GYAH-SGNLPRMEKIYELVKHHVD 327 (513)
Q Consensus 305 ~~~~-~g~~~~a~~~~~~~~~~~~ 327 (513)
.... ..+...|.++|....+.|.
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~ 359 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGH 359 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCC
Confidence 2222 2345566666666665553
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.11 E-value=0.58 Score=27.12 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=13.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH
Q 010320 193 YNALLGAYMYNGLSDKCQSLFRD 215 (513)
Q Consensus 193 ~~~li~~~~~~g~~~~A~~~~~~ 215 (513)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555566666666666666655
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.77 E-value=6.8 Score=32.91 Aligned_cols=60 Identities=8% Similarity=0.052 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCccc--HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010320 406 MRCIVSSYFRCNAVDKLANFVKRAESAGWRLC--RSLYHSKMVMYASQRRVEEMESVLKEME 465 (513)
Q Consensus 406 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 465 (513)
+..+...|++.|+.+.|.+.+.++.+....+. ...+-.+|......+++..+...+.+..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44455555555555555555555554433222 2334444555555555555555554443
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.72 E-value=8.4 Score=31.74 Aligned_cols=125 Identities=9% Similarity=-0.013 Sum_probs=57.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHhcCcHH
Q 010320 343 KCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCI--VSSYFRCNAVD 420 (513)
Q Consensus 343 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~ 420 (513)
+.+..+++..++..+++..-.++.......+.......|+-..|...|+++-.....|.-..-...| ...+..+|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3444555555555444433333332211123344455666666666666665543333211111111 11234455666
Q ss_pred HHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 010320 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENY 467 (513)
Q Consensus 421 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 467 (513)
+...-++-+...+-..-...-..|--+-.+.|++.+|.+.|..+...
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 55555554443333222333344444445666666666666665543
No 283
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.51 E-value=3.2 Score=37.52 Aligned_cols=99 Identities=11% Similarity=0.106 Sum_probs=61.5
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 010320 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEAN--ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNY 266 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 266 (513)
...+-..++..-....+++.+...+-+++.... ..|+.. -.+++..+. .-+.+.++.++..=++.|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 455555555555556677777777777764310 112221 122333332 2356677777777777788888888888
Q ss_pred HHHHHHHccCHHHHHHHHHHHHc
Q 010320 267 LIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
+|+.+.+.+++.+|.++.-.|..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH
Confidence 88888888888877777666554
No 284
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.17 E-value=12 Score=32.74 Aligned_cols=84 Identities=10% Similarity=0.014 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010320 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGY 271 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 271 (513)
.|.-...+|-...++++|...+.+..+ +.+-|..-|.+ ...++.|.-+.++|.+.. --+..|+--...|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslfhA-------AKayEqaamLake~~kls--Evvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLFHA-------AKAYEQAAMLAKELSKLS--EVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHHHH-------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHH
Confidence 344444555555666666555555442 22222222211 122344444455544321 1123344455555
Q ss_pred HHccCHHHHHHHHHH
Q 010320 272 MTAWMWGKVEEIYQM 286 (513)
Q Consensus 272 ~~~g~~~~a~~~~~~ 286 (513)
...|..+.|--.+++
T Consensus 102 ~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 102 VECGSPDTAAMALEK 116 (308)
T ss_pred HHhCCcchHHHHHHH
Confidence 555555555444444
No 285
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.85 E-value=6.5 Score=29.08 Aligned_cols=74 Identities=9% Similarity=0.083 Sum_probs=43.2
Q ss_pred HHHHHHHHHccCHH--HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHH
Q 010320 265 NYLIAGYMTAWMWG--KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMIC 339 (513)
Q Consensus 265 ~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (513)
+.--..|....+.| +..+-++.+....+.|+.....+.+++|.+.+++..|.++|+-++.... +....|..+++
T Consensus 12 ~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lq 87 (108)
T PF02284_consen 12 DARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHH
T ss_pred HHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHH
Confidence 33333444434333 5566666666777888888888888888888888888888887776422 22225655543
No 286
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.85 E-value=18 Score=34.25 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=34.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
...+.-+.|+|+...+........ .++...|..+... +.|+++++...++....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 356677888888855555555432 2355555555544 77888888887777654
No 287
>PRK11906 transcriptional regulator; Provisional
Probab=89.53 E-value=19 Score=34.90 Aligned_cols=109 Identities=7% Similarity=-0.021 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010320 383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLK 462 (513)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (513)
..+|.++-+...+. .+.|......+..+....++++.|...|++....+.. ...+|......+.-.|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45566666666663 3445555555666667777899999999988765522 23444444445566889999999998
Q ss_pred HHHhCCCCCC---HHHHHHHHHHHHhcCCHhHHHHHHH
Q 010320 463 EMENYKIDCS---KKTFWIMYYAYATCGQRRKVNQVLG 497 (513)
Q Consensus 463 ~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~ 497 (513)
+..+.. |. .......++.|+..+ .+.|.+++-
T Consensus 397 ~alrLs--P~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 397 KSLQLE--PRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHhccC--chhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 866543 33 233334445666654 456666553
No 288
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.36 E-value=13 Score=31.92 Aligned_cols=161 Identities=15% Similarity=0.169 Sum_probs=96.4
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010320 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK-TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLI 233 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li 233 (513)
-+.+||-+.-.+...|+++.|.+.|+...+.++. +-...|.-|. +--.|+++.|.+=|.+.-+. .|+..--...+
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~---D~~DPfR~LWL 173 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQD---DPNDPFRSLWL 173 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhc---CCCChHHHHHH
Confidence 4567888888889999999999999999887654 2222232232 33468899999888877764 23322222223
Q ss_pred HHHHhcCChhHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC------CCCHHHHHHHHHHH
Q 010320 234 SVFGRLLLVDHMEAAF-QEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPV------MPDTNTYLLLLRGY 306 (513)
Q Consensus 234 ~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------~p~~~t~~~ll~~~ 306 (513)
-.--..-+..+|..-+ ++..+ .|..-|...|-.|--. ++ ....+++.++...- +.=..||--|.+-+
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yLg-ki-S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~ 247 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYLG-KI-SEETLMERLKADATDNTSLAEHLTETYFYLGKYY 247 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHHh-hc-cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 2233344566666543 33333 3555555544443321 11 11223333333110 01246888888999
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 010320 307 AHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 307 ~~~g~~~~a~~~~~~~~~~ 325 (513)
...|+.++|..+|+-.+..
T Consensus 248 l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 248 LSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hccccHHHHHHHHHHHHHH
Confidence 9999999999999987765
No 289
>PRK11906 transcriptional regulator; Provisional
Probab=89.20 E-value=23 Score=34.46 Aligned_cols=159 Identities=11% Similarity=0.015 Sum_probs=89.7
Q ss_pred HHH--HHHHHHhccc-----CCHHHHHHHHHHHH---hccCCCHhHHHHHHHHHHH---------cCChHHHHHHHHHHH
Q 010320 157 EEY--TKGIKFAGRI-----NNVDLAADLFAEAA---NKHLKTIGTYNALLGAYMY---------NGLSDKCQSLFRDLK 217 (513)
Q Consensus 157 ~~~--~~ll~~~~~~-----g~~~~a~~~~~~m~---~~~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~ 217 (513)
..| ...+.+.... -..+.|..+|++.. +..+.....|..+..++.. .....+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554432 24567788888887 4333234555444433322 223455666666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHcC-CCCCC
Q 010320 218 KEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPN-VFTYNYLIAGYMTAWMWGKVEEIYQMMKAG-PVMPD 295 (513)
Q Consensus 218 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~ 295 (513)
+. -.-|......+..+..-.++++.|...|++....+ || ..+|......+.-.|+.++|.+.+++..+. -.+.-
T Consensus 332 el--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 332 DI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred hc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 43 24566677777777777777888888888877653 43 344544445555678888888888875542 11222
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHH
Q 010320 296 TNTYLLLLRGYAHSGNLPRMEKIYE 320 (513)
Q Consensus 296 ~~t~~~ll~~~~~~g~~~~a~~~~~ 320 (513)
.......++.|+.. .++.|.+++-
T Consensus 408 ~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 408 AVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHcCC-chhhhHHHHh
Confidence 23333334455543 3555655553
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.09 E-value=11 Score=30.73 Aligned_cols=50 Identities=14% Similarity=0.122 Sum_probs=27.8
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHcC
Q 010320 237 GRLLLVDHMEAAFQEIKDSNLSPNV---FTYNYLIAGYMTAWMWGKVEEIYQMMKAG 290 (513)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 290 (513)
.+.++.+++..+++-|.-. .|.. .++..+ .+.+.|++++|..+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVL--RPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHh--CCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc
Confidence 4455666666666666542 2332 222222 245566777777777776554
No 291
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.81 E-value=12 Score=30.87 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=10.2
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 010320 373 LIRVYAKEDCLEEMEKSIND 392 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~ 392 (513)
++..+...|++-+|.++.+.
T Consensus 95 iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 44445555555555555443
No 292
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.50 E-value=2.5 Score=38.22 Aligned_cols=94 Identities=11% Similarity=0.054 Sum_probs=62.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010320 373 LIRVYAKEDCLEEMEKSINDAFEHKTS--VTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 450 (513)
++..-....+++.++..+-++...... .+....+ .+++. +-.-+.++++.++..=.+.|+-||..+++.+|+.+.+
T Consensus 70 ~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk 147 (418)
T KOG4570|consen 70 LVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLK 147 (418)
T ss_pred hhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccchhhHHHHHHHHHh
Confidence 333333445677777766655543211 1111112 22332 2344677888888888889999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 010320 451 QRRVEEMESVLKEMENYK 468 (513)
Q Consensus 451 ~g~~~~A~~~~~~m~~~~ 468 (513)
.+++.+|..+.-.|....
T Consensus 148 ~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 148 KENYKDAASVVTEVMMQE 165 (418)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 999999999888777654
No 293
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.42 E-value=8 Score=28.29 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010320 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG 198 (513)
Q Consensus 137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~ 198 (513)
..++-..|...-+....|++.+..+.+++|-|.+++..|.++|+-++.+...+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 33444444444445567777777777777777777777777777666432223335555443
No 294
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.19 E-value=13 Score=30.62 Aligned_cols=21 Identities=29% Similarity=0.194 Sum_probs=9.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCC
Q 010320 221 NISPSIVTYNTLISVFGRLLL 241 (513)
Q Consensus 221 g~~p~~~~~~~li~~~~~~g~ 241 (513)
|++|+...|..+++.+.+.|+
T Consensus 24 ~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 24 NIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred CCCCCHHHHHHHHHHHHHcCC
Confidence 444444444444444444443
No 295
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.75 E-value=0.33 Score=39.22 Aligned_cols=84 Identities=10% Similarity=0.120 Sum_probs=45.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc
Q 010320 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275 (513)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 275 (513)
++..+.+.+..+....+++.+... +..-+....+.++..|++.++.+...++++.. +..-...++..|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 455555566666666666666643 33445566666666666666666666655521 1122334555555666
Q ss_pred CHHHHHHHHHHH
Q 010320 276 MWGKVEEIYQMM 287 (513)
Q Consensus 276 ~~~~a~~~~~~m 287 (513)
.++++.-++.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 666666555554
No 296
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.39 E-value=22 Score=32.17 Aligned_cols=133 Identities=12% Similarity=0.066 Sum_probs=88.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cC-ChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHccCHHH
Q 010320 203 NGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGR-LL-LVDHMEAAFQEIK-DSNLSPNVFTYNYLIAGYMTAWMWGK 279 (513)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~-~g-~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~ 279 (513)
+..+.+|+.+|+....+..+--|..+...+++.... .+ ....-.++.+-+. +.|-.++..+...++..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 344667777777332211355677777777777665 22 2222333444443 23456788888999999999999999
Q ss_pred HHHHHHHHHcC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-----HHhccCCCcHHHHH
Q 010320 280 VEEIYQMMKAG-PVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL-----VKHHVDGKEFPLIR 335 (513)
Q Consensus 280 a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~ 335 (513)
..++++.-... +..-|...|...|+.....|+..-..++.++ +++.++..+...-.
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~ 282 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRS 282 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHH
Confidence 99999887665 5556888999999999999998777776654 34445554544433
No 297
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=87.20 E-value=19 Score=31.35 Aligned_cols=69 Identities=10% Similarity=0.105 Sum_probs=39.7
Q ss_pred HHhcCcHHHHHHHHHHHHh-cCC-----------cccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010320 413 YFRCNAVDKLANFVKRAES-AGW-----------RLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480 (513)
Q Consensus 413 ~~~~~~~~~a~~~~~~~~~-~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 480 (513)
+...|++.+|+.-+..-.. .|. .|.+.....++..| ..+++++|.+++.++-+.|+.|.- ..+.+.
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~D-ii~~~F 279 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPED-IITTLF 279 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHH-HHHHHH
Confidence 4457777777777665321 111 24555555555444 346778888888887777776543 233444
Q ss_pred HHH
Q 010320 481 YAY 483 (513)
Q Consensus 481 ~~~ 483 (513)
+.+
T Consensus 280 Rv~ 282 (333)
T KOG0991|consen 280 RVV 282 (333)
T ss_pred HHH
Confidence 443
No 298
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.00 E-value=7.3 Score=38.67 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=22.4
Q ss_pred HccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010320 273 TAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVK 323 (513)
Q Consensus 273 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 323 (513)
+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 4455555555444332 33345555555555555555555554433
No 299
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=86.83 E-value=17 Score=30.44 Aligned_cols=55 Identities=9% Similarity=0.094 Sum_probs=33.0
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCc--------------ccHhhHHHHHHHHHhcCCHHHHHHHHH
Q 010320 408 CIVSSYFRCNAVDKLANFVKRAESAGWR--------------LCRSLYHSKMVMYASQRRVEEMESVLK 462 (513)
Q Consensus 408 ~li~~~~~~~~~~~a~~~~~~~~~~~~~--------------p~~~~~~~li~~~~~~g~~~~A~~~~~ 462 (513)
+++..|.+..++.++.++++.|.+..+. +--...|.-...|.+.|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 4566677777888888877777554322 222334555555566666666666655
No 300
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.81 E-value=19 Score=30.94 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 010320 405 IMRCIVSSYFRCNAVDKLANFVKRAES 431 (513)
Q Consensus 405 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 431 (513)
||--+..-+...|+.++|..+|+-...
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 344455555555555555555555443
No 301
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.66 E-value=8.9 Score=28.38 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHH
Q 010320 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLG 198 (513)
Q Consensus 139 ~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~ 198 (513)
++-..|...-+..+.|++.+..+.+++|.|.+++..|.++|+-++.+-......|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 344444444455577777777777788878888888888877776543322225555554
No 302
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=86.47 E-value=0.98 Score=25.80 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHhHHH
Q 010320 470 DCSKKTFWIMYYAYATCGQRRKVN 493 (513)
Q Consensus 470 ~p~~~~~~~li~~~~~~g~~~~A~ 493 (513)
+-|...|..+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345666666666666666666664
No 303
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.32 E-value=7.9 Score=28.31 Aligned_cols=46 Identities=13% Similarity=0.186 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 010320 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKH 324 (513)
Q Consensus 279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 324 (513)
++.+-++.+....+.|+.....+.+++|-+.+++..|.++|+-++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555555555666777777777777777777777777777776664
No 304
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.21 E-value=24 Score=36.24 Aligned_cols=93 Identities=11% Similarity=0.026 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccC-CC-------HhHHHHHHHHHHHcCC
Q 010320 134 PRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHL-KT-------IGTYNALLGAYMYNGL 205 (513)
Q Consensus 134 ~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~-------~~~~~~li~~~~~~g~ 205 (513)
+++-...++.|+++-......+..+...++-.|....+++...++.+.++...- -+ ...|.-.++---+-|+
T Consensus 179 G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GD 258 (1226)
T KOG4279|consen 179 GDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGD 258 (1226)
T ss_pred cHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCcc
Confidence 344445666666664444445666666777777777777777777777665310 01 1123333333334466
Q ss_pred hHHHHHHHHHHHHh-CCCCCCH
Q 010320 206 SDKCQSLFRDLKKE-ANISPSI 226 (513)
Q Consensus 206 ~~~A~~~~~~m~~~-~g~~p~~ 226 (513)
-++|+++.-.|.+. +.+.||.
T Consensus 259 RakAL~~~l~lve~eg~vapDm 280 (1226)
T KOG4279|consen 259 RAKALNTVLPLVEKEGPVAPDM 280 (1226)
T ss_pred HHHHHHHHHHHHHhcCCCCCce
Confidence 67777766655543 2345554
No 305
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.15 E-value=43 Score=34.25 Aligned_cols=150 Identities=11% Similarity=-0.011 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHhccCCCHhHHHHHH--HH-HHHcCChHHHHHHHHHHHH-------hCCCCCCHHHHHHHHHHHHhcC-
Q 010320 172 VDLAADLFAEAANKHLKTIGTYNALL--GA-YMYNGLSDKCQSLFRDLKK-------EANISPSIVTYNTLISVFGRLL- 240 (513)
Q Consensus 172 ~~~a~~~~~~m~~~~~~~~~~~~~li--~~-~~~~g~~~~A~~~~~~m~~-------~~g~~p~~~~~~~li~~~~~~g- 240 (513)
...|.++++.....|.......-.++ .+ +....+.+.|+.+|+...+ + | +....+-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~-~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK-G---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh-c---CCccccHHHHHHhcCCC
Confidence 56788888888877643222222222 22 4567789999999998866 3 3 3345666777776643
Q ss_pred ----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH--hcCChH
Q 010320 241 ----LVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT-AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYA--HSGNLP 313 (513)
Q Consensus 241 ----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g~~~ 313 (513)
+.+.|..++.+.-+.|. |+....-..+.-... ..+...|.++|...-+.|.. +..-+..++.... -..+.+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 56779999988888775 454433222222222 24678999999999888733 2222222222222 233678
Q ss_pred HHHHHHHHHHhccC
Q 010320 314 RMEKIYELVKHHVD 327 (513)
Q Consensus 314 ~a~~~~~~~~~~~~ 327 (513)
.|..++++..+.|.
T Consensus 382 ~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGN 395 (552)
T ss_pred HHHHHHHHHHHccC
Confidence 88888888888773
No 306
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.05 E-value=2.1 Score=25.41 Aligned_cols=27 Identities=15% Similarity=0.126 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320 474 KTFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
.+++.|...|...|++++|.+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456677777777777777777777653
No 307
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.68 E-value=2.5 Score=23.75 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320 474 KTFWIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
.+|..+..+|...|++++|++.|++.++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46777788888888888888888877653
No 308
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.68 E-value=21 Score=30.21 Aligned_cols=95 Identities=7% Similarity=0.102 Sum_probs=64.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010320 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTT-VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 450 (513)
.+...+...+++++|+..++..+.......- ..+=-.|.......|.+|.|+..++.....++.+ .....--+.+..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHH
Confidence 3567788889999999988877653221111 1111224456677889999999988777666543 222334567888
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 010320 451 QRRVEEMESVLKEMENYK 468 (513)
Q Consensus 451 ~g~~~~A~~~~~~m~~~~ 468 (513)
.|+-++|..-|+...+.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 899999999998888765
No 309
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.89 E-value=3.6 Score=23.10 Aligned_cols=27 Identities=19% Similarity=0.269 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320 192 TYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555555555555555555553
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.30 E-value=20 Score=28.83 Aligned_cols=54 Identities=4% Similarity=0.003 Sum_probs=35.5
Q ss_pred cCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010320 344 CSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTS 399 (513)
Q Consensus 344 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 399 (513)
.++.++++.++..++-+.++.....+ .-.-.+...|++++|.++|+++.+.+..
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~--~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDM--FDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccch--hHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 56667777777777766665554443 2344456778888888888887776544
No 311
>PRK11619 lytic murein transglycosylase; Provisional
Probab=84.29 E-value=56 Score=34.03 Aligned_cols=116 Identities=9% Similarity=0.044 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHH
Q 010320 381 DCLEEMEKSINDAFEHKTSVT--TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEME 458 (513)
Q Consensus 381 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 458 (513)
.+.+.|..++........... ...+...+.......+...++.+.+....... .+......-+....+.++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 345777777776544322211 12223333333333322445555555433222 23344455555555788888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 010320 459 SVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM 499 (513)
Q Consensus 459 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 499 (513)
..+..|.... .-...-.--+.+++...|+.++|..+|++.
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777775432 223333335667767778888888888775
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.70 E-value=2.8 Score=24.81 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Q 010320 263 TYNYLIAGYMTAWMWGKVEEIYQMM 287 (513)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~m 287 (513)
+++.|...|...|++++|.+++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444444444444444443
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.53 E-value=4.4 Score=22.59 Aligned_cols=27 Identities=19% Similarity=0.189 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320 192 TYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
.|..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555555666666665555553
No 314
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.48 E-value=3.6 Score=22.98 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320 474 KTFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 474 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
..|..+...+...|++++|++.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566777788888888888888887764
No 315
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.01 E-value=34 Score=30.52 Aligned_cols=202 Identities=14% Similarity=0.095 Sum_probs=113.0
Q ss_pred CCCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHc---CCCC
Q 010320 221 NISPSIVTYNTLISVF-GRLLLVDHMEAAFQEIKDSNLSPNV---FTYNYLIAGYMTAWMWGKVEEIYQMMKA---GPVM 293 (513)
Q Consensus 221 g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~ 293 (513)
+-.||+..=|..-..- .+...+++|+.-|++..+..-+... ...--+|..+.+.|++++..+.|.+|.. ..+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4467765444322221 2344788899999888875332233 3344567888888999999988888764 1121
Q ss_pred --CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCCcH----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcc
Q 010320 294 --PDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH-VDGKEF----PLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYR 366 (513)
Q Consensus 294 --p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 366 (513)
-+..+.++++.-.....+.+.-.++++.-.+. .-..+. .|-+.|...|...|.+.+..++++.+......+-.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 23556677777776666666655555432221 000111 12345666677777777777776666544322111
Q ss_pred c----------chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH-----hcCcHHHHH
Q 010320 367 P----------WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYF-----RCNAVDKLA 423 (513)
Q Consensus 367 ~----------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-----~~~~~~~a~ 423 (513)
. -+|++-|..|....+-.....++++.+.-....|.+.+ ..+|+-|. +.|.+++|.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHH
Confidence 1 12445566666666666666777766654444444433 33444432 345666654
No 316
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.26 E-value=20 Score=35.79 Aligned_cols=151 Identities=13% Similarity=0.052 Sum_probs=88.2
Q ss_pred cccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 010320 167 GRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHME 246 (513)
Q Consensus 167 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 246 (513)
.-.|+++.|..++..+++ ..-+.+...+-+.|..++|+++-. |... -.....+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~k------~~rt~va~Fle~~g~~e~AL~~s~----------D~d~---rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK------EIRTKVAHFLESQGMKEQALELST----------DPDQ---RFELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCch------hhhhhHHhHhhhccchHhhhhcCC----------Chhh---hhhhhhhcCcHHHHH
Confidence 345677777666555542 244556666667777777765422 2211 112234567777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 010320 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHV 326 (513)
Q Consensus 247 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 326 (513)
++..+.. +..-|..|.++....|++..|.+.|..... |..|+-.+...|+-+....+-....+.|
T Consensus 658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 7665542 556677777777778888877777766544 4566666666777665555555556655
Q ss_pred CCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010320 327 DGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLI 360 (513)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 360 (513)
.. |.-..+|...|++++ +.+++.+.
T Consensus 723 ~~------N~AF~~~~l~g~~~~---C~~lLi~t 747 (794)
T KOG0276|consen 723 KN------NLAFLAYFLSGDYEE---CLELLIST 747 (794)
T ss_pred cc------chHHHHHHHcCCHHH---HHHHHHhc
Confidence 42 222335666676554 44444443
No 317
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.72 E-value=70 Score=33.24 Aligned_cols=64 Identities=9% Similarity=-0.091 Sum_probs=37.9
Q ss_pred HhcCcHHHHHHHHHHHHhcCCc-cc-----HhhHHHHHH--HHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHH
Q 010320 414 FRCNAVDKLANFVKRAESAGWR-LC-----RSLYHSKMV--MYASQRRVEEMESVLK--------EMENYKIDCSKKTFW 477 (513)
Q Consensus 414 ~~~~~~~~a~~~~~~~~~~~~~-p~-----~~~~~~li~--~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~ 477 (513)
+-.+++..|...++.|.+..-. |+ ...+..++. .+-..|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 3468888899999888643211 11 112222222 2335799999999997 445555554444444
No 318
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=80.69 E-value=35 Score=29.19 Aligned_cols=58 Identities=14% Similarity=0.096 Sum_probs=30.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 010320 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA 432 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 432 (513)
+...+...+.++.|...+......... ....+..+...+...+..+.+...+......
T Consensus 208 ~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 208 LGLLYLKLGKYEEALEYYEKALELDPD--NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhHHHHHcccHHHHHHHHHHHHhhCcc--cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555555666666666665553222 1222333333444555677777666666543
No 319
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=80.42 E-value=67 Score=32.25 Aligned_cols=114 Identities=9% Similarity=-0.050 Sum_probs=53.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC--cccHhhHHHHHHHHHhc
Q 010320 374 IRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW--RLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 374 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~ 451 (513)
+..-...|+.+.+.-+|+..... ...-...|-..+.-....|+.+.|..++....+.-. .|......+.+ .-..
T Consensus 304 Ldf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~ 379 (577)
T KOG1258|consen 304 LDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESN 379 (577)
T ss_pred hhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhh
Confidence 34444556666666555554331 111122233334444444666666666665543322 23333333222 2235
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHhHHH
Q 010320 452 RRVEEMESVLKEMENYKIDCSKKT-FWIMYYAYATCGQRRKVN 493 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~ 493 (513)
|++..|..+++.+.+.- |+..- -..-+....+.|+.+.+.
T Consensus 380 ~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 380 GNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred ccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 67777777777776542 43321 112233344566666665
No 320
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.32 E-value=3.5 Score=25.23 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=14.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHHC
Q 010320 479 MYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 479 li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666665543
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.10 E-value=21 Score=30.40 Aligned_cols=72 Identities=10% Similarity=-0.078 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc---CCCCCCHHHHHHHHHHHHhcCChHHH
Q 010320 243 DHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA---GPVMPDTNTYLLLLRGYAHSGNLPRM 315 (513)
Q Consensus 243 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~g~~~~a 315 (513)
+.|.+.|-++...+..-+....-.|...|. ..+.+++++++....+ .+-.+|+..+.+|...+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444544444443333333333333333 3345555555554433 12244555555555555555555544
No 322
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.09 E-value=5.5 Score=22.25 Aligned_cols=27 Identities=7% Similarity=0.154 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320 475 TFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777777777777777776654
No 323
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.09 E-value=1.6 Score=35.23 Aligned_cols=83 Identities=11% Similarity=0.151 Sum_probs=49.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcC
Q 010320 302 LLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKED 381 (513)
Q Consensus 302 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 381 (513)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.+++.+ .+... .+.... .++..|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~---~L~~~--~~yd~~---~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLE---FLKTS--NNYDLD---KALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHH---TTTSS--SSS-CT---HHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHH---Hcccc--cccCHH---HHHHHHHhcc
Confidence 455566677777777788887766655677778888888888775554333 23211 112222 3566666666
Q ss_pred CHHHHHHHHHH
Q 010320 382 CLEEMEKSIND 392 (513)
Q Consensus 382 ~~~~a~~~~~~ 392 (513)
.+++|.-++.+
T Consensus 85 l~~~a~~Ly~~ 95 (143)
T PF00637_consen 85 LYEEAVYLYSK 95 (143)
T ss_dssp SHHHHHHHHHC
T ss_pred hHHHHHHHHHH
Confidence 66666655543
No 324
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=79.89 E-value=35 Score=28.71 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC--------------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCCCC
Q 010320 442 HSKMVMYASQRRVEEMESVLKEMENYK--------------IDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYDVP 507 (513)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~m~~~~--------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 507 (513)
-+++-.|.+..++.+..++++.|.+.. ..+.-..-|.....|.+.|..|.|+.+++ +...-.|
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr---eseWii~ 212 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR---ESEWIIS 212 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh---ccceeec
Confidence 356677888899999999999888742 22445667888899999999999999987 4445455
Q ss_pred CCCC
Q 010320 508 VNAF 511 (513)
Q Consensus 508 ~~t~ 511 (513)
..+|
T Consensus 213 t~lW 216 (233)
T PF14669_consen 213 TPLW 216 (233)
T ss_pred CCCC
Confidence 5444
No 325
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=79.88 E-value=30 Score=27.82 Aligned_cols=81 Identities=6% Similarity=0.082 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010320 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNL-----SPNVFTYNYLIAGYMTAWM-WGKVEEIYQMMKAGPVMPDTNTYLLL 302 (513)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~l 302 (513)
.|.++.-....+++.....+++.+.-... ..+..+|++++.+..+... ---+..+|..|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35555555555555555555555532100 1244556666666655444 23455666666666666666677777
Q ss_pred HHHHHhc
Q 010320 303 LRGYAHS 309 (513)
Q Consensus 303 l~~~~~~ 309 (513)
|.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7666554
No 326
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.71 E-value=56 Score=30.88 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=38.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010320 196 LLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (513)
...+..+.|+++...++....... .++...|.++... +.++.+++....++...
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~---~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED---SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC---ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 456778889999966666555432 3466666666554 88999999988887764
No 327
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.20 E-value=11 Score=32.42 Aligned_cols=73 Identities=12% Similarity=0.045 Sum_probs=42.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcccHhhHHHHHHH
Q 010320 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESA--GWRLCRSLYHSKMVM 447 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~ 447 (513)
.++.+.+.+.+.+|+....+-++. .|++...-..+++.+|-.|++++|..-++-.-.. ...+-..+|..+|.+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 455566667777777766665553 2444444555677777777777777666654322 223344555555543
No 328
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.18 E-value=1.5e+02 Score=35.49 Aligned_cols=65 Identities=6% Similarity=-0.006 Sum_probs=51.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010320 438 RSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505 (513)
Q Consensus 438 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 505 (513)
..+|-...+..-+.|+++.|...+-...+.+ .| ..+.-..+-....|+...|+.++++..+....
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 4557777777778999999999887777666 33 45667778889999999999999998876543
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.86 E-value=4.8 Score=22.21 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=13.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh
Q 010320 196 LLGAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
+..++.+.|++++|.+.|+++..+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 344455555666666666655543
No 330
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.41 E-value=57 Score=30.24 Aligned_cols=162 Identities=6% Similarity=-0.101 Sum_probs=109.8
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHcc
Q 010320 200 YMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT----YNYLIAGYMTAW 275 (513)
Q Consensus 200 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~li~~~~~~g 275 (513)
..-.|++.+|-..++++.++ .+-|...++..=.+|.-.|+.+.-...++++... -.+|... -....-++...|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 34568888999999999974 6788889999999999999999999999888743 1234332 233344566789
Q ss_pred CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc---HHHHHHHHHHHHhcCChhHHHH
Q 010320 276 MWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE---FPLIRAMICAYSKCSVTDRIKK 352 (513)
Q Consensus 276 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~ 352 (513)
-+++|++.-++..+-+ +-|...-.++...+-..|+..++.++..+-...-.... ..-|=...-.+...+.++.|.+
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999999999888744 33667777788888889999999888766443211111 1111122223455577887777
Q ss_pred HHH--HHHhCCCCCc
Q 010320 353 IEA--LMRLIPEKEY 365 (513)
Q Consensus 353 ~~~--~~~~~~~~~~ 365 (513)
++. +..+....+.
T Consensus 269 IyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHHhhccch
Confidence 743 4455555444
No 331
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.41 E-value=33 Score=27.54 Aligned_cols=88 Identities=8% Similarity=0.072 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-----cccHhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHH
Q 010320 404 RIMRCIVSSYFRCNAVDKLANFVKRAESAGW-----RLCRSLYHSKMVMYASQRR-VEEMESVLKEMENYKIDCSKKTFW 477 (513)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~ 477 (513)
...|+++.-....++......+++.+..... ..+...|.+++.+.++..- ---+..+|+-|++.+.+++..-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3467777777778888888888777632111 2356679999999977766 455778888998888999999999
Q ss_pred HHHHHHHhcCCHhH
Q 010320 478 IMYYAYATCGQRRK 491 (513)
Q Consensus 478 ~li~~~~~~g~~~~ 491 (513)
.++.++.+.-..+.
T Consensus 120 ~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 120 CLIKAALRGYFHDS 133 (145)
T ss_pred HHHHHHHcCCCCcc
Confidence 99999988644443
No 332
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.11 E-value=35 Score=30.73 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh-----cCcHHHHHHHH
Q 010320 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR-----CNAVDKLANFV 426 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~~~~~~a~~~~ 426 (513)
+-|-.|.+.+....+.++-..-+.....-... -|.+++..|.. .|.+++|+++.
T Consensus 123 LCILLysKv~Ep~amlev~~~WL~~p~Nq~lp-~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 123 LCILLYSKVQEPAAMLEVASAWLQDPSNQSLP-EYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhCcccCCch-hhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34455555555555555554444332221111 14444443333 45555555555
No 333
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.32 E-value=50 Score=28.96 Aligned_cols=24 Identities=8% Similarity=0.183 Sum_probs=15.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC
Q 010320 449 ASQRRVEEMESVLKEMENYKIDCS 472 (513)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~~~p~ 472 (513)
+..+++.+|+.+|++.....+..+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 456677777777777766544433
No 334
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=77.24 E-value=6.1 Score=24.17 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=16.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 010320 302 LLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 302 ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
|..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 556677777777777777766654
No 335
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.00 E-value=19 Score=31.00 Aligned_cols=57 Identities=14% Similarity=0.010 Sum_probs=30.6
Q ss_pred HHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010320 160 TKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDL 216 (513)
Q Consensus 160 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 216 (513)
+..+..+.+.+.+.+|+...++-.+..+.+...-..+++.+|-.|++++|..-++..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 334445555555666665555544444445555555556666666666665544433
No 336
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.96 E-value=1.1e+02 Score=32.61 Aligned_cols=223 Identities=10% Similarity=0.011 Sum_probs=116.2
Q ss_pred HccCHHHHHHHHHHHHcC----CCCCCH---HHHHHHH-HHHHhcCChHHHHHHHHHHHhc----cCCCcHHHHHHHHHH
Q 010320 273 TAWMWGKVEEIYQMMKAG----PVMPDT---NTYLLLL-RGYAHSGNLPRMEKIYELVKHH----VDGKEFPLIRAMICA 340 (513)
Q Consensus 273 ~~g~~~~a~~~~~~m~~~----g~~p~~---~t~~~ll-~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~ 340 (513)
-..++++|..++.+.... +..+.. ..++.|- ......|+++.|.++-+..... -..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 356888998888876542 222222 2333332 2234567888888888776553 223455666777777
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCccc----chHHHHHHHHHhcCC--HHHHHHHHHHHHhc-----CCCCchHHHHHHH
Q 010320 341 YSKCSVTDRIKKIEALMRLIPEKEYRP----WLNVLLIRVYAKEDC--LEEMEKSINDAFEH-----KTSVTTVRIMRCI 409 (513)
Q Consensus 341 ~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~--~~~a~~~~~~~~~~-----~~~~~~~~~~~~l 409 (513)
..-.|++++|..+.....++....-.. |.--.-...+...|+ +++.+..|...... +..-.-..++..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 888898888877777666664332222 210011223344563 23333333332221 1111123345555
Q ss_pred HHHHHhcCcHHHHHHH----HHHHHhcCCcccHhh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHH
Q 010320 410 VSSYFRCNAVDKLANF----VKRAESAGWRLCRSL--YHSKMVMYASQRRVEEMESVLKEMENYKIDC----SKKTFWIM 479 (513)
Q Consensus 410 i~~~~~~~~~~~a~~~----~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~l 479 (513)
+.++.+ .+.+..- ++--......|-..- +..|...+...|+.++|...++++......+ +..+-...
T Consensus 587 l~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 587 LRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 555554 3332222 222122222222222 2367778888999999999999888754333 22222222
Q ss_pred HH--HHHhcCCHhHHHHHHHH
Q 010320 480 YY--AYATCGQRRKVNQVLGL 498 (513)
Q Consensus 480 i~--~~~~~g~~~~A~~~~~~ 498 (513)
++ .-...|+...+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 22 23467888777776655
No 337
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=76.85 E-value=60 Score=29.65 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=41.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCch---HHHHHHHHHHHHhcCcHHH-HHHHHHHHHhcCCcccHhhHHHHHHHH
Q 010320 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTT---VRIMRCIVSSYFRCNAVDK-LANFVKRAESAGWRLCRSLYHSKMVMY 448 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~~~p~~~~~~~li~~~ 448 (513)
|..-..+...+++.....++-.++...|.. ..+|..++++-.-+++-+. |.+.++. ..+|..|+.++
T Consensus 261 L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af 331 (412)
T KOG2297|consen 261 LQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAF 331 (412)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHH
Confidence 444455556666666666554444443322 1246666665444432221 3333333 23577778888
Q ss_pred HhcCCHHHHH
Q 010320 449 ASQRRVEEME 458 (513)
Q Consensus 449 ~~~g~~~~A~ 458 (513)
+..|+.+-++
T Consensus 332 ~s~g~sEL~L 341 (412)
T KOG2297|consen 332 CSQGQSELEL 341 (412)
T ss_pred hcCChHHHHH
Confidence 8888776554
No 338
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=76.17 E-value=30 Score=29.51 Aligned_cols=73 Identities=8% Similarity=-0.064 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHccCHHHHH
Q 010320 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDS---NLSPNVFTYNYLIAGYMTAWMWGKVE 281 (513)
Q Consensus 207 ~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~ 281 (513)
+.|++.|-++... +.--++.....|...|. ..+.++++.++.+..+. +-.+|...+..|.+.+-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~-~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGT-PELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5666666666654 43344444444444444 44566666666665532 22456666777777777777666654
No 339
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.14 E-value=1.1e+02 Score=31.83 Aligned_cols=183 Identities=15% Similarity=0.107 Sum_probs=98.3
Q ss_pred HHHHHHHHHHcCCCCCCCC--HHHHHHHHHHhc-ccCCHHHHHHHHHHHHhccC-C---C--HhHHHHHHHHHHHcCChH
Q 010320 137 ALEVLNWRRRQAGYGTPMT--KEEYTKGIKFAG-RINNVDLAADLFAEAANKHL-K---T--IGTYNALLGAYMYNGLSD 207 (513)
Q Consensus 137 a~~~~~~~~~~~~~g~~~~--~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~~~-~---~--~~~~~~li~~~~~~g~~~ 207 (513)
|+..++.+.+. ...+|. ..++-.+...|. ...+++.|+..+++.....- + + -.....++..+.+.+...
T Consensus 40 ai~CL~~~~~~--~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 40 AIKCLEAVLKQ--FKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 44445544432 223433 334445566655 56788888888886543221 1 1 122334566666666555
Q ss_pred HHHHHHHHHHHhCCC---CCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH--ccCHH
Q 010320 208 KCQSLFRDLKKEANI---SPSIVTYNTL-ISVFGRLLLVDHMEAAFQEIKDSN---LSPNVFTYNYLIAGYMT--AWMWG 278 (513)
Q Consensus 208 ~A~~~~~~m~~~~g~---~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~--~g~~~ 278 (513)
|....++..+...- .+-...|..+ +..+...++...|.+.++.+...- ..|-..++-.++.+... .+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888876654211 1112223333 223333478888888888777432 23444555555555443 45566
Q ss_pred HHHHHHHHHHcCC---------CCCCHHHHHHHHHHHH--hcCChHHHHHHHHHH
Q 010320 279 KVEEIYQMMKAGP---------VMPDTNTYLLLLRGYA--HSGNLPRMEKIYELV 322 (513)
Q Consensus 279 ~a~~~~~~m~~~g---------~~p~~~t~~~ll~~~~--~~g~~~~a~~~~~~~ 322 (513)
++.+..+++.... -.|-..+|..+++.++ ..|+++.+...++++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6777776663311 1234667777776664 456666666555444
No 340
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.73 E-value=32 Score=25.49 Aligned_cols=60 Identities=13% Similarity=0.003 Sum_probs=37.1
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 010320 410 VSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTF 476 (513)
Q Consensus 410 i~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 476 (513)
+..+.+.|++++|..+.+.. ..||..-|-.| +-.+.|..+.+..-+.+|..+| .|....|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34556677777777776654 35666665544 2346666676777777777766 4544444
No 341
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.68 E-value=5 Score=21.07 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=10.6
Q ss_pred HHHHHHHhcCCHhHHHHHHH
Q 010320 478 IMYYAYATCGQRRKVNQVLG 497 (513)
Q Consensus 478 ~li~~~~~~g~~~~A~~~~~ 497 (513)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 44455555555555555543
No 342
>PHA02875 ankyrin repeat protein; Provisional
Probab=74.49 E-value=88 Score=30.48 Aligned_cols=79 Identities=14% Similarity=0.060 Sum_probs=39.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHH
Q 010320 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVT--YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVF--TYNYLIAGYMT 273 (513)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~ 273 (513)
...+..|+.+-+.. +.+. |..|+... ..+.+...+..|+.+- .+.+.+.|..|+.. .....+...+.
T Consensus 7 ~~A~~~g~~~iv~~----Ll~~-g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 7 CDAILFGELDIARR----LLDI-GINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHhCCHHHHHH----HHHC-CCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHH
Confidence 33445566544433 3333 66666533 2345555566676653 34444556555432 11234445556
Q ss_pred ccCHHHHHHHHH
Q 010320 274 AWMWGKVEEIYQ 285 (513)
Q Consensus 274 ~g~~~~a~~~~~ 285 (513)
.|+.+.+..+++
T Consensus 78 ~g~~~~v~~Ll~ 89 (413)
T PHA02875 78 EGDVKAVEELLD 89 (413)
T ss_pred CCCHHHHHHHHH
Confidence 677666555443
No 343
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.17 E-value=78 Score=29.72 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=31.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHhHHHHHHHHHHHCC
Q 010320 448 YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY----ATCGQRRKVNQVLGLMCKNG 503 (513)
Q Consensus 448 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g 503 (513)
+.+.++..-|...+..+..+++..-..||.+|=-.+ .+.+..++|.+..-+|.+.|
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 445566666666666666666655556666543322 23455566666666665554
No 344
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.79 E-value=6.5 Score=21.63 Aligned_cols=26 Identities=12% Similarity=0.177 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHHC
Q 010320 477 WIMYYAYATCGQRRKVNQVLGLMCKN 502 (513)
Q Consensus 477 ~~li~~~~~~g~~~~A~~~~~~m~~~ 502 (513)
-.+..++.+.|++++|.+.|+++++.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556677777888888887777654
No 345
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.67 E-value=11 Score=20.99 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320 192 TYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555666666666666666665543
No 346
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.38 E-value=52 Score=29.66 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=34.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHcC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHH
Q 010320 268 IAGYMTAWMWGKVEEIYQMMKAG--PVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYS 342 (513)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (513)
|.+++..+++.+++...-+--+. .+.|.+ ...-|-.|.+.+++..+.++-..-.+.--.-+..-|.++...|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 55666666666665544333221 222222 22333345666666666665555444222223333555555444
No 347
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.14 E-value=1.4e+02 Score=32.16 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=30.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010320 446 VMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYAT 485 (513)
Q Consensus 446 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 485 (513)
-.|......+-+..+++.+....-.++....+.++.-|++
T Consensus 599 l~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 599 LNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 3566777888899999998877656677778888877764
No 348
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=71.25 E-value=1.3e+02 Score=31.17 Aligned_cols=64 Identities=9% Similarity=0.107 Sum_probs=40.9
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHHHC
Q 010320 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLL-------VDHMEAAFQEIKDS 255 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~ 255 (513)
+...| .+|--|.|+|++++|.++..+... ........+-..+..|....+ -+....-|++....
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 34455 456678999999999999977765 345556677777888766532 23444555555543
No 349
>PHA02875 ankyrin repeat protein; Provisional
Probab=71.10 E-value=1e+02 Score=29.97 Aligned_cols=139 Identities=13% Similarity=-0.017 Sum_probs=72.0
Q ss_pred HHhcccCCHHHHHHHHHHHHhccCC-CH--hHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHh
Q 010320 164 KFAGRINNVDLAADLFAEAANKHLK-TI--GTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIV--TYNTLISVFGR 238 (513)
Q Consensus 164 ~~~~~~g~~~~a~~~~~~m~~~~~~-~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~--~~~~li~~~~~ 238 (513)
...++.|+.+.+..+++ .|.. +. ....+.+...+..|+.+ +.+.+.+. |..|+.. ...+.+...+.
T Consensus 7 ~~A~~~g~~~iv~~Ll~----~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~-ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 7 CDAILFGELDIARRLLD----IGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKH-GAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHhCCHHHHHHHHH----CCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhC-CCCccccCCCcccHHHHHHH
Confidence 33456788776666654 4542 22 22345566667778865 44444543 6656543 12345666678
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHH--HHHHHHHHHhcCChH
Q 010320 239 LLLVDHMEAAFQEIKDSNLSPNVF---TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNT--YLLLLRGYAHSGNLP 313 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~ 313 (513)
.|+.+.+..+++. |...+.. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+
T Consensus 78 ~g~~~~v~~Ll~~----~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~ 149 (413)
T PHA02875 78 EGDVKAVEELLDL----GKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK 149 (413)
T ss_pred CCCHHHHHHHHHc----CCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 8888776666543 3222111 1123344445566654 4445555665554321 123344455677765
Q ss_pred HHHHHH
Q 010320 314 RMEKIY 319 (513)
Q Consensus 314 ~a~~~~ 319 (513)
.+..++
T Consensus 150 ~v~~Ll 155 (413)
T PHA02875 150 GIELLI 155 (413)
T ss_pred HHHHHH
Confidence 544443
No 350
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=70.73 E-value=1.8e+02 Score=32.27 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=34.1
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320 409 IVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 409 li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
-+.+|..+|+|.+|+.+..++.... .--..+-..|+.-+...++.-+|-++..+...
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 3556666777777777766654211 11122224566667778888888887777654
No 351
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.62 E-value=85 Score=28.59 Aligned_cols=55 Identities=11% Similarity=0.021 Sum_probs=35.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q 010320 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRA 429 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 429 (513)
....|..+|.+.+|.++.+..+. ..|-+...+..+++.+...|+--.+.+-++++
T Consensus 285 va~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 45666777777777777766665 33334555666777777777766666655554
No 352
>PRK10941 hypothetical protein; Provisional
Probab=69.90 E-value=82 Score=28.57 Aligned_cols=79 Identities=9% Similarity=-0.085 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 010320 192 TYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN-LSPNVFTYNYLIAG 270 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~ 270 (513)
..+.+-.+|.+.++++.|+++.+.+..- .+-|..-+.--.-.|.+.|.+..|..=++...+.. -.|+.......+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l--~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQF--DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3456667788888999999988888853 23344556666677888888888888777776542 23455555555554
Q ss_pred HH
Q 010320 271 YM 272 (513)
Q Consensus 271 ~~ 272 (513)
.-
T Consensus 261 l~ 262 (269)
T PRK10941 261 IE 262 (269)
T ss_pred Hh
Confidence 43
No 353
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.81 E-value=68 Score=27.41 Aligned_cols=94 Identities=13% Similarity=0.063 Sum_probs=62.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCch---HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010320 374 IRVYAKEDCLEEMEKSINDAFEHKTSVTT---VRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450 (513)
Q Consensus 374 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 450 (513)
..-+.++|++++|..-|.+.++.-...+. ...|..-..++.+.+.++.|++--.+.++.+..- .....--..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHHHHh
Confidence 44577889999999999888874332221 2234444556777888888887777766655321 1122222457788
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 010320 451 QRRVEEMESVLKEMENYK 468 (513)
Q Consensus 451 ~g~~~~A~~~~~~m~~~~ 468 (513)
...+++|+.=|..+.+.+
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 889999999999998865
No 354
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=69.27 E-value=21 Score=22.29 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=16.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 010320 450 SQRRVEEMESVLKEMENYKIDCSKKTFWIMY 480 (513)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 480 (513)
+.|-+.++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555555444
No 355
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=68.60 E-value=20 Score=22.34 Aligned_cols=30 Identities=7% Similarity=0.041 Sum_probs=14.1
Q ss_pred ccCHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 010320 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLL 303 (513)
Q Consensus 274 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 303 (513)
.|-..++..++++|.+.|+..+...|..++
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 344444455555555555444444444433
No 356
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.21 E-value=96 Score=28.27 Aligned_cols=70 Identities=13% Similarity=0.011 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH-----HHCCCCCCCCCC
Q 010320 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLM-----CKNGYDVPVNAF 511 (513)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~g~~p~~~t~ 511 (513)
++.....|..+|.+.+|.++-+.....+ +.+...|..|+..+...|+--.|.+-+++| .+.|+..|.+.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 4555678889999999999999998877 678888999999999999977777777766 355887777654
No 357
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=67.57 E-value=1.6e+02 Score=30.44 Aligned_cols=101 Identities=8% Similarity=-0.009 Sum_probs=54.0
Q ss_pred chhHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHH
Q 010320 119 NGYAFVELMKQLGS-RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALL 197 (513)
Q Consensus 119 ~~~~~~~~l~~~~~-~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li 197 (513)
....+..+++.+.. ..+.-.++++.+.. . ....+..+++++...|-.....-+.+.+....+.+...-..+.
T Consensus 309 ~~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~------~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~ 381 (574)
T smart00638 309 AAAKFLRLVRLLRTLSEEQLEQLWRQLYE-K------KKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLA 381 (574)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHh-C------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45566666666654 33334455555432 1 1456777777777777777777777766665554444444444
Q ss_pred HHHHHc-CChHHHHHHHHHHHHhCCCCCCH
Q 010320 198 GAYMYN-GLSDKCQSLFRDLKKEANISPSI 226 (513)
Q Consensus 198 ~~~~~~-g~~~~A~~~~~~m~~~~g~~p~~ 226 (513)
.+.... .--.+.++.+.+|.+.....+..
T Consensus 382 ~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~ 411 (574)
T smart00638 382 VLPHTARYPTEEILKALFELAESPEVQKQP 411 (574)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcCccccccH
Confidence 433332 22344445555554432344443
No 358
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.24 E-value=22 Score=24.99 Aligned_cols=46 Identities=11% Similarity=0.048 Sum_probs=26.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHH
Q 010320 450 SQRRVEEMESVLKEMENYKIDCS--KKTFWIMYYAYATCGQRRKVNQV 495 (513)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~ 495 (513)
..++.++|+..|+...++-..+. -.++..|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666665432222 23455666777777777666554
No 359
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.01 E-value=35 Score=24.53 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=6.3
Q ss_pred CChHHHHHHHHHHH
Q 010320 204 GLSDKCQSLFRDLK 217 (513)
Q Consensus 204 g~~~~A~~~~~~m~ 217 (513)
|+.+.|.++++.+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 360
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=66.83 E-value=50 Score=24.52 Aligned_cols=86 Identities=10% Similarity=-0.026 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 010320 205 LSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284 (513)
Q Consensus 205 ~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 284 (513)
..++|..|-+.+... +.. ...+--+-+..+...|++++|..+.+.+. .||...|-.|-. .+.|..++...-+
T Consensus 20 cHqEA~tIAdwL~~~-~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLK-GES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcC-Cch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHH
Confidence 456777777776643 211 22222333455677788888887777663 578887776654 3566666666666
Q ss_pred HHHHcCCCCCCHHHH
Q 010320 285 QMMKAGPVMPDTNTY 299 (513)
Q Consensus 285 ~~m~~~g~~p~~~t~ 299 (513)
..|...| .|....|
T Consensus 92 ~rla~sg-~p~lq~F 105 (115)
T TIGR02508 92 NRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHhCC-CHHHHHH
Confidence 6666655 3343333
No 361
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.74 E-value=28 Score=29.68 Aligned_cols=33 Identities=9% Similarity=0.034 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 010320 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKD 254 (513)
Q Consensus 222 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 254 (513)
..|+..+|..++.++...|+.++|.++.+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356666666666666666666666666666654
No 362
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=66.02 E-value=1.3e+02 Score=29.14 Aligned_cols=63 Identities=13% Similarity=0.044 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCC
Q 010320 441 YHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGY 504 (513)
Q Consensus 441 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 504 (513)
...|+.-|...|++.+|.+.++++.--- --....+.+++.+..+.|+-...+.+++..-+.|+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPf-FhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPF-FHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCc-chHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 3456677777777777777766653211 12345667777777777777777777776665554
No 363
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=65.70 E-value=80 Score=26.47 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 010320 277 WGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327 (513)
Q Consensus 277 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 327 (513)
+++|.+.|++... ..|+..+|+.-+.... .|-+++.++.+++.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHh
Confidence 4455555555544 3566667766666663 24455555555443
No 364
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=65.66 E-value=1.1e+02 Score=30.61 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010320 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAE 430 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 430 (513)
-++.-|.+.+++++|..++..|-=......-....+.+.+...+..--++.+..++.+.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~al 471 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAAL 471 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 36777788888888888776654321111122234445555555543444444444444
No 365
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.56 E-value=28 Score=24.46 Aligned_cols=47 Identities=11% Similarity=0.223 Sum_probs=27.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHhcCcHHHHHHH
Q 010320 379 KEDCLEEMEKSINDAFEHKTSVT-TVRIMRCIVSSYFRCNAVDKLANF 425 (513)
Q Consensus 379 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 425 (513)
...+.++|+..|...+++-..++ ...++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777766665433332 233455566666666666665554
No 366
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.99 E-value=65 Score=25.12 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320 279 KVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 279 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
+..+-+.....-.+.|+.......+++|-+.+|+..|..+|+-++..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45556666667778899999999999999999999999999888764
No 367
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=63.82 E-value=1.5e+02 Score=28.99 Aligned_cols=105 Identities=17% Similarity=0.134 Sum_probs=57.7
Q ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320 139 EVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 139 ~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
++...+.+++ ..+.-+..|-..=+.+.|-.|+++-...+.+.--.-.++|..-.+.|+-++.+ |+.+-|. .+.+
T Consensus 98 ~vVk~L~~~g-a~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~yk-Gh~~I~q----yLle 171 (615)
T KOG0508|consen 98 EVVKLLLRRG-ASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYK-GHVDIAQ----YLLE 171 (615)
T ss_pred HHHHHHHHhc-CccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeecc-CchHHHH----HHHH
Confidence 3444444444 33444444444556666667777766666644333333455555555554443 5544443 3343
Q ss_pred hCCCCCCHHHH--HHHHHHHHhcCChhHHHHHHH
Q 010320 219 EANISPSIVTY--NTLISVFGRLLLVDHMEAAFQ 250 (513)
Q Consensus 219 ~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~ 250 (513)
. |..+|..++ |+.+.-|+..|.++-...++.
T Consensus 172 ~-gADvn~ks~kGNTALH~caEsG~vdivq~Ll~ 204 (615)
T KOG0508|consen 172 Q-GADVNAKSYKGNTALHDCAESGSVDIVQLLLK 204 (615)
T ss_pred h-CCCcchhcccCchHHHhhhhcccHHHHHHHHh
Confidence 3 667777666 778888888887765544443
No 368
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=63.59 E-value=59 Score=30.21 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=30.4
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010320 199 AYMYNGLSDKCQSLFRDLKKEANISP-SIVTYNTLISVFGRLLLVDHMEAAFQEIK 253 (513)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (513)
-|.+.|.+++|+..|..-.. +.| |.++|..-..+|.+...+..|+.=-+...
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 35666666666666665542 234 66666666666666666665554444443
No 369
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=63.26 E-value=2.1e+02 Score=30.53 Aligned_cols=223 Identities=12% Similarity=0.027 Sum_probs=110.6
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC----H---HHHHHHHH-HHHHccCHHHHHHHHHHHHcC----CCCCCHHHHHHHHHH
Q 010320 238 RLLLVDHMEAAFQEIKDSNLSPN----V---FTYNYLIA-GYMTAWMWGKVEEIYQMMKAG----PVMPDTNTYLLLLRG 305 (513)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~g~~p~----~---~~~~~li~-~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~ll~~ 305 (513)
...++++|..+.+++...=..|+ . ..|+.+-. .....|++++++++-+..... -..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 45677788777777654321222 1 23443332 233467888888877776542 233456777777888
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCcHH---HHHHHHH--HHHhcCChhHH--HHHHHHHHhCC-----CCCcccchHHHH
Q 010320 306 YAHSGNLPRMEKIYELVKHHVDGKEFP---LIRAMIC--AYSKCSVTDRI--KKIEALMRLIP-----EKEYRPWLNVLL 373 (513)
Q Consensus 306 ~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~--~~~~~g~~~~a--~~~~~~~~~~~-----~~~~~~~~~~~l 373 (513)
..-.|++++|..+..+..+..-.-+.. .|..+.. .+...|....+ +.++.....-. ..+....+...+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 888899999888887665532222333 2333322 23344522222 22222222211 111111222234
Q ss_pred HHHHHhcCCHHHHHHHHHHHH----hcCCCCchH-HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc----cHhhHHHH
Q 010320 374 IRVYAKEDCLEEMEKSINDAF----EHKTSVTTV-RIMRCIVSSYFRCNAVDKLANFVKRAESAGWRL----CRSLYHSK 444 (513)
Q Consensus 374 i~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l 444 (513)
..++.+ ++.+..-..... .....+-+. ..+..|+......|+.++|...++++......+ +-..-...
T Consensus 587 l~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 587 LRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 444443 333332222222 221222111 122356777788999999999888876533332 22222222
Q ss_pred HHH--HHhcCCHHHHHHHHHH
Q 010320 445 MVM--YASQRRVEEMESVLKE 463 (513)
Q Consensus 445 i~~--~~~~g~~~~A~~~~~~ 463 (513)
+.. -...|+.+.|.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 222 2357777777666554
No 370
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.91 E-value=2.3e+02 Score=31.34 Aligned_cols=83 Identities=8% Similarity=0.002 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcCCCC---CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010320 263 TYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM---PD-TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338 (513)
Q Consensus 263 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (513)
-|-.++..+-+.+-.+.+.++-....+. +. |. ..+++.+.+.....|.+-+|.+.+-.... ..........++
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd--serrrdcLRqlv 1061 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD--SERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc--HHHHHHHHHHHH
Confidence 3666777777788888888877666552 12 22 45677777777888877777655432111 111122445666
Q ss_pred HHHHhcCChh
Q 010320 339 CAYSKCSVTD 348 (513)
Q Consensus 339 ~~~~~~g~~~ 348 (513)
..++.+|.++
T Consensus 1062 ivLfecg~l~ 1071 (1480)
T KOG4521|consen 1062 IVLFECGELE 1071 (1480)
T ss_pred HHHHhccchH
Confidence 6677777654
No 371
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=62.06 E-value=54 Score=25.65 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=8.2
Q ss_pred HHHHHHHhcCCHhHHHHHH
Q 010320 478 IMYYAYATCGQRRKVNQVL 496 (513)
Q Consensus 478 ~li~~~~~~g~~~~A~~~~ 496 (513)
.....+...|++.+|.++|
T Consensus 104 ~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 104 EWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3333344444444444444
No 372
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=61.88 E-value=78 Score=29.27 Aligned_cols=131 Identities=11% Similarity=-0.026 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010320 242 VDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYEL 321 (513)
Q Consensus 242 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 321 (513)
+.+|+++|++..+ .-..+|+ +..+...--...+-+.+.+...-++.-.-|.-+..+.|+..+|.+.|++
T Consensus 232 i~~AE~l~k~ALk----a~e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 232 IVDAERLFKQALK----AGETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred HHHHHHHHHHHHH----HHHHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred -HHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHH-HHHHHHHhcCCH
Q 010320 322 -VKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNV-LLIRVYAKEDCL 383 (513)
Q Consensus 322 -~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~ 383 (513)
|++..+..-..+...|+.++....-+.+...++..++++..+......|+ .++.+-+...++
T Consensus 301 L~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RAVa~kF 364 (556)
T KOG3807|consen 301 LMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKF 364 (556)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhc
No 373
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=61.87 E-value=20 Score=24.23 Aligned_cols=50 Identities=14% Similarity=0.014 Sum_probs=27.6
Q ss_pred ccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010320 436 LCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATC 486 (513)
Q Consensus 436 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 486 (513)
|....++.++..+++..-+++++..+.+....|. .+..+|.--++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 3444556666666666666666666666666652 4555555555555543
No 374
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=61.47 E-value=1.7e+02 Score=32.14 Aligned_cols=27 Identities=11% Similarity=0.373 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHhc
Q 010320 406 MRCIVSSYFRCN--AVDKLANFVKRAESA 432 (513)
Q Consensus 406 ~~~li~~~~~~~--~~~~a~~~~~~~~~~ 432 (513)
+..++.+|++.+ +++.|+..+.++++.
T Consensus 815 l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 815 LQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 445666666666 666666666666543
No 375
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=61.24 E-value=1.3e+02 Score=27.37 Aligned_cols=115 Identities=7% Similarity=0.018 Sum_probs=63.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHHHHH-HHHHHccCHHHHHHHHHHHHcCCCCCC
Q 010320 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK----DSNLSPNVFTYNYLI-AGYMTAWMWGKVEEIYQMMKAGPVMPD 295 (513)
Q Consensus 221 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~ 295 (513)
|-.--...+..+...|++.++.+.+.++..+.. ..|.+-|+...-+-+ -.|....-.++-++..+.|.++|...+
T Consensus 110 gE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 110 GETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 333345567777888888888888877666554 345555554333222 223333345677777788887775433
Q ss_pred ----HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHH
Q 010320 296 ----TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAM 337 (513)
Q Consensus 296 ----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 337 (513)
-.+|..+-. ....++.+|-.++-+.....-......|...
T Consensus 190 RrNRyK~Y~Gi~~--m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~ 233 (412)
T COG5187 190 RRNRYKVYKGIFK--MMRRNFKEAAILLSDILPTFESSELISYSRA 233 (412)
T ss_pred hhhhHHHHHHHHH--HHHHhhHHHHHHHHHHhccccccccccHHHH
Confidence 233433322 2234677777777666554333333334433
No 376
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=61.13 E-value=1.6e+02 Score=30.63 Aligned_cols=185 Identities=10% Similarity=0.012 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHccCHHHHHH
Q 010320 206 SDKCQSLFRDLKKEANISPSIVTYNT--LISVFGRLLLVDHMEAAFQEIK-DSNLSPNVFTYNYLIAGYMTAWMWGKVEE 282 (513)
Q Consensus 206 ~~~A~~~~~~m~~~~g~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 282 (513)
+.+.+...+.|.++ .-.| .....+ +=+.|-..|++++|+++--... ...+.++...+.+++.-|... -.+++.+
T Consensus 39 Isd~l~~IE~lyed-~~F~-er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~ 115 (929)
T KOG2062|consen 39 ISDSLPKIESLYED-ETFP-ERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASE 115 (929)
T ss_pred hhhhHHHHHHHhcc-CCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHH
Confidence 44555556666654 2223 333333 3367888899999887653332 234566777777766555442 2334444
Q ss_pred HHHHHH-cCCCCCC-HHHHHHHHHHHHhcCChHHHHHH---------HHH-HHhccCCCcHHHHHHHHHHHHhcCC-hhH
Q 010320 283 IYQMMK-AGPVMPD-TNTYLLLLRGYAHSGNLPRMEKI---------YEL-VKHHVDGKEFPLIRAMICAYSKCSV-TDR 349 (513)
Q Consensus 283 ~~~~m~-~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~---------~~~-~~~~~~~~~~~~~~~li~~~~~~g~-~~~ 349 (513)
.++.-. ..++.+- .....-++..|...+++..|+.+ +++ +.+.....+ ..+.+++.+..... -+-
T Consensus 116 ~~~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~--~~~yll~l~~s~v~~~ef 193 (929)
T KOG2062|consen 116 TYKNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIG--NLTYLLELLISLVNNREF 193 (929)
T ss_pred HhcCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccch--HHHHHHHHHHHHHhhHHH
Confidence 444222 1222221 23445555555555555554433 222 222222222 23333333332221 111
Q ss_pred HHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010320 350 IKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396 (513)
Q Consensus 350 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 396 (513)
-.++++.+-+.-.+...|++. .+..+|....+.+.+.++++++.++
T Consensus 194 R~~vlr~lv~~y~~~~~PDy~-~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 194 RNKVLRLLVKTYLKLPSPDYF-SVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHHHHHHHccCCCCCee-eeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 122333332222333333322 3778888889999999999998874
No 377
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.11 E-value=53 Score=27.51 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC-----------hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 010320 172 VDLAADLFAEAANKHLKTIGTYNALLGAYMYNGL-----------SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLL 240 (513)
Q Consensus 172 ~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 240 (513)
+++|..-|++.....+....++..+..+|...+. +++|.+.|+..... .|+...|+.-+....
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~---~P~ne~Y~ksLe~~~--- 124 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE---DPNNELYRKSLEMAA--- 124 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHH---
Confidence 3445555555555555555666666666654432 45555666666543 688888887777763
Q ss_pred ChhHHHHHHHHHHHCCC
Q 010320 241 LVDHMEAAFQEIKDSNL 257 (513)
Q Consensus 241 ~~~~A~~~~~~m~~~g~ 257 (513)
.|-++..++.+.+.
T Consensus 125 ---kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 125 ---KAPELHMEIHKQGL 138 (186)
T ss_dssp ---THHHHHHHHHHSSS
T ss_pred ---hhHHHHHHHHHHHh
Confidence 35556666655543
No 378
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=60.79 E-value=67 Score=28.73 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=12.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 010320 372 LLIRVYAKEDCLEEMEKSINDA 393 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~ 393 (513)
.|..-|...|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3555556666666666665554
No 379
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.60 E-value=25 Score=23.38 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 010320 442 HSKMVMYASQRRVEEMESVLKEME 465 (513)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~m~ 465 (513)
-.+|.+|...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555666666666665555544
No 380
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=60.38 E-value=1.3e+02 Score=27.24 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=27.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHHccCHHHHH
Q 010320 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYN-------YLIAGYMTAWMWGKVE 281 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-------~li~~~~~~g~~~~a~ 281 (513)
+.+-..+.+++++|+..+.++...|+..|..+.| .+...|...|++...-
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~ 65 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLG 65 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHH
Confidence 3444556667777777777777776665544332 3344455555444433
No 381
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=60.13 E-value=24 Score=19.03 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=12.2
Q ss_pred CHHHHHHHHHHHHhccCCCHhHHHHHH
Q 010320 171 NVDLAADLFAEAANKHLKTIGTYNALL 197 (513)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~li 197 (513)
+.+.|.++|+++....+.+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 344555555555543333444444433
No 382
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=59.39 E-value=1.5e+02 Score=27.59 Aligned_cols=95 Identities=12% Similarity=0.112 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHH----HhcCCcccHhhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCH----H
Q 010320 404 RIMRCIVSSYFRCNAVDKLANFVKRA----ESAGWRLCRSLYHSKMV-MYASQRRVEEMESVLKEMENYKIDCSK----K 474 (513)
Q Consensus 404 ~~~~~li~~~~~~~~~~~a~~~~~~~----~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~----~ 474 (513)
..+.....-||+.|+-+.|.+.+++. ...|.+.|+..+.+-+. .|....-+.+-++..+.+.++|-.-+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34566778899999999999888764 45677777766554333 334444556777777788888865433 2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 010320 475 TFWIMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
+|.-+ -|....++.+|..+|-+..
T Consensus 185 vY~Gl--y~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGL--YCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHHc
Confidence 33332 2345567888888877654
No 383
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=58.90 E-value=44 Score=22.23 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=14.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 010320 195 ALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
.+|.+|...|++++|.++.+++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 446666666666666666666554
No 384
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=58.66 E-value=63 Score=26.07 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=16.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcC
Q 010320 303 LRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345 (513)
Q Consensus 303 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 345 (513)
++.+...++.-.|.++++.+.+.+......|.-.-++.+...|
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3333333333444444444444433333333222334444443
No 385
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=58.63 E-value=9.5 Score=29.86 Aligned_cols=32 Identities=6% Similarity=-0.038 Sum_probs=23.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010320 450 SQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAY 483 (513)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (513)
..|.-.+|..+|+.|.+.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345556688899999988887764 77777654
No 386
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.63 E-value=72 Score=29.45 Aligned_cols=29 Identities=10% Similarity=0.167 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q 010320 191 GTYNALLGAYMYNGLSDKCQSLFRDLKKE 219 (513)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 219 (513)
..|..++.+|+...-.++|+..+++-.++
T Consensus 300 ~l~kq~l~~~A~d~aieD~i~~L~~~~r~ 328 (365)
T KOG2391|consen 300 PLYKQILECYALDLAIEDAIYSLGKSLRD 328 (365)
T ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHhc
Confidence 34555555555555555555555555543
No 387
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=58.60 E-value=17 Score=18.99 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 010320 475 TFWIMYYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 475 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 501 (513)
.|..+...+...|+++.|...+++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 466777788888888888888877764
No 388
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=57.94 E-value=2e+02 Score=28.58 Aligned_cols=169 Identities=9% Similarity=0.046 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 010320 223 SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLL 302 (513)
Q Consensus 223 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 302 (513)
..|....-+++..++....++-++.+-.+|...| -+...|-.++.+|... ..++-..+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 3455556677777777777777888888887765 3667777788888777 557777777777765433 44444444
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCC--c---HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHH
Q 010320 303 LRGYAHSGNLPRMEKIYELVKHHVDGK--E---FPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVY 377 (513)
Q Consensus 303 l~~~~~~g~~~~a~~~~~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 377 (513)
..-|-+ ++.+.+..+|..+...-++. + ..+|.-++..-.. +.+...........-...+.....+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~d--D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGD--DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccc--cHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444444 77777777777766653321 1 1134444332221 22222222222222222222111122345667
Q ss_pred HhcCCHHHHHHHHHHHHhcCC
Q 010320 378 AKEDCLEEMEKSINDAFEHKT 398 (513)
Q Consensus 378 ~~~~~~~~a~~~~~~~~~~~~ 398 (513)
....++++|+++++.+++...
T Consensus 216 s~~eN~~eai~Ilk~il~~d~ 236 (711)
T COG1747 216 SENENWTEAIRILKHILEHDE 236 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcc
Confidence 788899999999988887543
No 389
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.39 E-value=22 Score=32.34 Aligned_cols=28 Identities=18% Similarity=-0.019 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 010320 230 NTLISVFGRLLLVDHMEAAFQEIKDSNL 257 (513)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~~~m~~~g~ 257 (513)
|..|....+.||+++|+.+++|.+..|+
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3455555555555555555555554444
No 390
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=55.97 E-value=44 Score=22.95 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcC
Q 010320 171 NVDLAADLFAEAANKHLKTIGTYNALLGAYMYNG 204 (513)
Q Consensus 171 ~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g 204 (513)
+.+.|..++..+......++..||++...+.+++
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHcc
Confidence 4566777777776655557888888888776654
No 391
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.88 E-value=63 Score=27.49 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=19.7
Q ss_pred CcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320 434 WRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 434 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
..|+...|..++..+...|+.++|.++.+++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666666666666666665554
No 392
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=55.61 E-value=1.8e+02 Score=27.25 Aligned_cols=77 Identities=9% Similarity=0.069 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHH---cCChHHHHHHH
Q 010320 137 ALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMY---NGLSDKCQSLF 213 (513)
Q Consensus 137 a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~ 213 (513)
.+.+++...+. .+-+....-.+|+.+.+..+.++..+-|+++....+.+...|-..|..... .-.++....+|
T Consensus 50 klsilerAL~~----np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 50 KLSILERALKH----NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455554443 334677777778888888888888888888887765577777777765544 22355555555
Q ss_pred HHHH
Q 010320 214 RDLK 217 (513)
Q Consensus 214 ~~m~ 217 (513)
.+..
T Consensus 126 ~~~l 129 (321)
T PF08424_consen 126 EKCL 129 (321)
T ss_pred HHHH
Confidence 5544
No 393
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=55.18 E-value=1e+02 Score=25.92 Aligned_cols=14 Identities=14% Similarity=0.074 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhc
Q 010320 383 LEEMEKSINDAFEH 396 (513)
Q Consensus 383 ~~~a~~~~~~~~~~ 396 (513)
++-|+.+|+.+.+.
T Consensus 85 LESAl~v~~~I~~E 98 (200)
T cd00280 85 LESALMVLESIEKE 98 (200)
T ss_pred HHHHHHHHHHHHHh
Confidence 55566666555443
No 394
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.45 E-value=1.8e+02 Score=26.99 Aligned_cols=97 Identities=7% Similarity=-0.046 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHcCCCCCC----HH
Q 010320 227 VTYNTLISVFGRLLLVDHMEAAFQEIK----DSNLSPNVFTYNYLIAGYM-TAWMWGKVEEIYQMMKAGPVMPD----TN 297 (513)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~----~~ 297 (513)
..+-.....||+.||-+.|++.+.+.. ..|.+.|+.-+-+-+..+. ...-+.+-++..+.|.+.|...+ -.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 345556666777777777777665544 3456666655554443322 22223444445555555554333 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 010320 298 TYLLLLRGYAHSGNLPRMEKIYELVKHH 325 (513)
Q Consensus 298 t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 325 (513)
+|..+- |....++.+|-.+|-+....
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 444433 23345677777777666543
No 395
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.08 E-value=1.4e+02 Score=25.59 Aligned_cols=93 Identities=10% Similarity=-0.083 Sum_probs=60.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCccc---chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q 010320 339 CAYSKCSVTDRIKKIEALMRLIPEKEYRP---WLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFR 415 (513)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 415 (513)
+-+.+.|+++.|..-+.....+.+.-... ..|.--..++.+.+.++.|++-..+.++. .|+....+-.-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHh
Confidence 35778898888877777666665543221 11222345677888899998887777773 34333333333457788
Q ss_pred cCcHHHHHHHHHHHHhcC
Q 010320 416 CNAVDKLANFVKRAESAG 433 (513)
Q Consensus 416 ~~~~~~a~~~~~~~~~~~ 433 (513)
...++.|++=|+.+.+..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 888889988888887654
No 396
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.72 E-value=1.1e+02 Score=24.03 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=21.5
Q ss_pred HHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH
Q 010320 279 KVEEIYQMMKAGPVMPD-TNTYLLLLRGYAHSGNLPRMEKIYE 320 (513)
Q Consensus 279 ~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~ 320 (513)
.+.++|..|..+|+--. ...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555444322 4455555555555555555555554
No 397
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=53.25 E-value=1e+02 Score=23.76 Aligned_cols=30 Identities=7% Similarity=0.027 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Q 010320 314 RMEKIYELVKHHVDGKEFPLIRAMICAYSK 343 (513)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (513)
.+..+++.+.+.|...|.......+.....
T Consensus 10 ~I~~vi~~l~~~gyidD~~ya~~~v~~~~~ 39 (121)
T PF02631_consen 10 AIEEVIDRLKELGYIDDERYAESYVRSRLR 39 (121)
T ss_dssp HHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhcc
Confidence 345556666666665555555555555554
No 398
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.89 E-value=30 Score=31.53 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Q 010320 406 MRCIVSSYFRCNAVDKLANFVKRAESAGW 434 (513)
Q Consensus 406 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 434 (513)
|+.-|....+.||+++|+.++++.++.|.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44444444555555555555555554443
No 399
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.39 E-value=3.3e+02 Score=29.24 Aligned_cols=80 Identities=8% Similarity=-0.038 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH------hHHHH
Q 010320 421 KLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQR------RKVNQ 494 (513)
Q Consensus 421 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~------~~A~~ 494 (513)
.+..+++-....-..-+...+|.++..|++..+-+.- ..++.....+-. ...-....++.|.+.+.. .-+++
T Consensus 611 ~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll-~~le~~~~~~~~-~~YDl~~alRlc~~~~~~ra~V~l~~~l~ 688 (911)
T KOG2034|consen 611 QAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLL-LYLEIIKFMKSR-VHYDLDYALRLCLKFKKTRACVFLLCMLN 688 (911)
T ss_pred HHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchH-HHHHHHhhcccc-ceecHHHHHHHHHHhCccceeeeHHHHHH
Confidence 3444444333333344677788888888876554333 333322221101 112223455666655543 33455
Q ss_pred HHHHHHHC
Q 010320 495 VLGLMCKN 502 (513)
Q Consensus 495 ~~~~m~~~ 502 (513)
+|.++.+.
T Consensus 689 l~~~aVdl 696 (911)
T KOG2034|consen 689 LFEDAVDL 696 (911)
T ss_pred HHHHHHHH
Confidence 55555444
No 400
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=52.06 E-value=51 Score=25.24 Aligned_cols=89 Identities=17% Similarity=0.206 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 010320 207 DKCQSLFRDLKKEANISP-SIVTYNTLISVFGRLLLVDHMEAAFQEI-KDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIY 284 (513)
Q Consensus 207 ~~A~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 284 (513)
+++.+.+.++++..|+.| |+..--++...+.....++. ..+ ...|++-+..||. |+++.....+
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~-----~~~~~d~g~e~~~~t~~---------Ge~~~~~~~l 71 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSD-----EDIKDDSGLELNWKTFT---------GEYDDIYEAL 71 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCC-----CccCCCCCeEEeeeeec---------CchHHHHHHH
Confidence 566777777777777777 55444444444433322220 000 1123333333333 5555555444
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhcC
Q 010320 285 QMMKAGPVMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~~~~~~g 310 (513)
=++.- |...|...+...+.++...|
T Consensus 72 l~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 72 LKQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred HHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 44333 45556666666666665444
No 401
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.83 E-value=1.1e+02 Score=23.84 Aligned_cols=43 Identities=2% Similarity=-0.054 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHH
Q 010320 385 EMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVK 427 (513)
Q Consensus 385 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 427 (513)
.+.++|..|..++........|......+...|++++|.+++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444444444444444444444444444444444443
No 402
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.80 E-value=19 Score=28.33 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=10.5
Q ss_pred CChHHHHHHHHHHHHhCCCCCC
Q 010320 204 GLSDKCQSLFRDLKKEANISPS 225 (513)
Q Consensus 204 g~~~~A~~~~~~m~~~~g~~p~ 225 (513)
|.-.+|-.+|.+|.++ |-+||
T Consensus 109 gsk~DaY~VF~kML~~-G~pPd 129 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLER-GNPPD 129 (140)
T ss_pred ccCCcHHHHHHHHHhC-CCCCc
Confidence 3444455555555543 44554
No 403
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=51.78 E-value=1.8e+02 Score=26.19 Aligned_cols=58 Identities=9% Similarity=-0.011 Sum_probs=27.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc-----hHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 010320 373 LIRVYAKEDCLEEMEKSINDAFEHKTSVT-----TVRIMRCIVSSYFRCNAVDKLANFVKRAE 430 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 430 (513)
+..-|.+.|+++.|-.++--+........ ....-..++......++++-+.++.+-+.
T Consensus 185 Lf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~ 247 (258)
T PF07064_consen 185 LFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLK 247 (258)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 56666666666666655543322211111 11122234444455555665555555444
No 404
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=51.24 E-value=2.1e+02 Score=26.64 Aligned_cols=125 Identities=12% Similarity=0.008 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 010320 190 IGTYNALLGAYMYNGL---SDKCQSLFRDLKKEANI---SPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT 263 (513)
Q Consensus 190 ~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 263 (513)
...-..++...+ |+ .++|.+.|++......- ..+......++....+.|+.+....+++..... .+...
T Consensus 129 ~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~ 203 (324)
T PF11838_consen 129 RLLRALLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEE 203 (324)
T ss_dssp HHHHHHHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHH
T ss_pred HHHHHHHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHH
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHhcCCh--HHHHHHHHH
Q 010320 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGP-VMPDTNTYLLLLRGYAHSGNL--PRMEKIYEL 321 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~--~~a~~~~~~ 321 (513)
...++.+++...+.+...++++.....+ +++.. ...++.++...+.. +.+.+.+..
T Consensus 204 k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 204 KRRLLSALACSPDPELLKRLLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccCCHHHHHHHHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHHH
No 405
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=50.76 E-value=87 Score=29.12 Aligned_cols=62 Identities=8% Similarity=0.146 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhc---CCcccHhhH--HHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320 405 IMRCIVSSYFRCNAVDKLANFVKRAESA---GWRLCRSLY--HSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 405 ~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
....++....+.++.++|+++++++.+. --.|+...| ......+...|+.+++.+++++..+
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3444555666677888888888877532 223455544 3344555677888888888777766
No 406
>PRK09687 putative lyase; Provisional
Probab=50.61 E-value=2e+02 Score=26.31 Aligned_cols=233 Identities=9% Similarity=-0.049 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH----HHHHHHHHHHHcCCCCCCHHHH
Q 010320 224 PSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW----GKVEEIYQMMKAGPVMPDTNTY 299 (513)
Q Consensus 224 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~p~~~t~ 299 (513)
+|.......+.++...|. +.+...+..+.+. +|...-...+.++.+.|+. +++..++..+..+ .++...-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 444455555555555553 2222333333322 3445555555555555542 3455555554221 2444444
Q ss_pred HHHHHHHHhcCCh-----HHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHH
Q 010320 300 LLLLRGYAHSGNL-----PRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI 374 (513)
Q Consensus 300 ~~ll~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 374 (513)
...+.++...+.. ..+...+..... .++..+-...+.++++.++.+........+. .++. +.....+
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~---d~~~--~VR~~A~ 180 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDEAAIPLLINLLK---DPNG--DVRNWAA 180 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhc---CCCH--HHHHHHH
Confidence 4455554443321 112222222211 2244444455555555554322111122111 1111 1111233
Q ss_pred HHHHhcC-CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCC
Q 010320 375 RVYAKED-CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRR 453 (513)
Q Consensus 375 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 453 (513)
.++...+ ..+.+...+..++... +..+-...+.++.+.|+. .+...+-...+.+. .....+.+++..|.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~D~----~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~ 250 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQDK----NEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGD 250 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhcCC----ChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCC
Confidence 3444332 2334555554444322 233344556666677664 34444444443332 12356677777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010320 454 VEEMESVLKEMENYKIDCSKKTFWIMYYAY 483 (513)
Q Consensus 454 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 483 (513)
. +|...+.++.+.. ||..+-...+.++
T Consensus 251 ~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 251 K-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred H-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 4 5777777776543 3555555555544
No 407
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=50.26 E-value=1.5e+02 Score=27.75 Aligned_cols=92 Identities=10% Similarity=-0.057 Sum_probs=54.6
Q ss_pred HhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 010320 165 FAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDH 244 (513)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 244 (513)
-|.+.|.+++|++.|..-....+.|.++|..-..+|.+..++..|..=.+....-. ..-+..|.--+.+--..|...+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHhhHHH
Confidence 46788888888888887666555577778777788888877776665555444310 1112233333444344455555
Q ss_pred HHHHHHHHHHCCCCCC
Q 010320 245 MEAAFQEIKDSNLSPN 260 (513)
Q Consensus 245 A~~~~~~m~~~g~~p~ 260 (513)
|.+=++..+. ++|+
T Consensus 184 AKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 184 AKKDCETVLA--LEPK 197 (536)
T ss_pred HHHhHHHHHh--hCcc
Confidence 5555555544 3454
No 408
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.26 E-value=98 Score=22.59 Aligned_cols=21 Identities=5% Similarity=-0.024 Sum_probs=13.0
Q ss_pred HHHHHcCChHHHHHHHHHHHH
Q 010320 198 GAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~ 218 (513)
......|+.++|...+++..+
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 345556777777777666553
No 409
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=50.16 E-value=2e+02 Score=26.24 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHH----h
Q 010320 382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRC-------NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYA----S 450 (513)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~----~ 450 (513)
+..+|..+|.+..+.|.... ......+...|... .+...|...+.++-..+ +......+...|. -
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred CHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 55666666666666554432 01112222222222 12235667777666655 2222333333332 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------------CHhHHHHHHHHHHHCCCCC
Q 010320 451 QRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCG---------------QRRKVNQVLGLMCKNGYDV 506 (513)
Q Consensus 451 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---------------~~~~A~~~~~~m~~~g~~p 506 (513)
..+.++|...|....+.|. ......+- .+...| +...|...+......|...
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 4467777777777777764 22222222 333333 6677777777777666543
No 410
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=49.92 E-value=55 Score=24.63 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 010320 207 DKCQSLFRDLKKEANISP-SIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQ 285 (513)
Q Consensus 207 ~~A~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 285 (513)
++|.+.+.++++..|+.| |+..--++...+..-..+..+..- ...|++-|-.||. |+++.....+=
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~~~~~----~d~~~E~~~~T~~---------Ge~~~i~~alL 71 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGVADIK----LDGNVEIDWYTFA---------GEYGDIYLALL 71 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCccccC----CCCCeEEEeeeec---------CchHHHHHHHH
Confidence 567777777777777777 554444444433332222211000 0122233333332 66665555443
Q ss_pred HHH--cCCCCCCHHHHHHHHHHHHhcC
Q 010320 286 MMK--AGPVMPDTNTYLLLLRGYAHSG 310 (513)
Q Consensus 286 ~m~--~~g~~p~~~t~~~ll~~~~~~g 310 (513)
++. ..|...|...+...+.++...|
T Consensus 72 kq~~~~~~~~~d~e~l~~~~~lHl~rG 98 (105)
T TIGR03184 72 KQRCVADGPELDDESLAKALNLHVHRG 98 (105)
T ss_pred HHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 322 4455666666666666665443
No 411
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=49.82 E-value=1.2e+02 Score=31.00 Aligned_cols=73 Identities=10% Similarity=0.073 Sum_probs=43.5
Q ss_pred HHHHHhcccCCHHHHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCChH------HHHHHHHHHHHhCCCCCCHHHHHH
Q 010320 161 KGIKFAGRINNVDLAADLFAEAANKHLK---TIGTYNALLGAYMYNGLSD------KCQSLFRDLKKEANISPSIVTYNT 231 (513)
Q Consensus 161 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~g~~p~~~~~~~ 231 (513)
+|+.+|...|++..+.++++.+...+-. -...||.-|+.+.+.|.++ .|.+++++. .+.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 6777777777777777777776654321 2456777777777777643 233333322 23446666666
Q ss_pred HHHHHH
Q 010320 232 LISVFG 237 (513)
Q Consensus 232 li~~~~ 237 (513)
|+.+-.
T Consensus 109 l~~~sl 114 (1117)
T COG5108 109 LCQASL 114 (1117)
T ss_pred HHHhhc
Confidence 665543
No 412
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=49.74 E-value=1.2e+02 Score=27.91 Aligned_cols=58 Identities=9% Similarity=0.295 Sum_probs=35.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010320 246 EAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308 (513)
Q Consensus 246 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 308 (513)
.++++.|.+.++.|.-.++.-+.-.+.+.=.+.+++.+++.+... ..-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 356666666667777666666665566666666777777776652 2225566666553
No 413
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=49.55 E-value=3.4e+02 Score=28.56 Aligned_cols=125 Identities=11% Similarity=0.033 Sum_probs=76.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhc
Q 010320 373 LIRVYAKEDCLEEMEKSINDAFEHKTSV-TTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQ 451 (513)
Q Consensus 373 li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 451 (513)
+.-++..-|+-++|..+.++|....... ....+| ++.-+|+-.|+-....+++.-... ...-|+.-+..+.-++.-.
T Consensus 507 vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~-t~alAy~GTgnnkair~lLh~aVs-D~nDDVrRaAVialGFVl~ 584 (929)
T KOG2062|consen 507 VGIALVVYGRQEDADPLIKELLRDKDPILRYGGMY-TLALAYVGTGNNKAIRRLLHVAVS-DVNDDVRRAAVIALGFVLF 584 (929)
T ss_pred HhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHH-HHHHHHhccCchhhHHHhhccccc-ccchHHHHHHHHHheeeEe
Confidence 4445566678888888998888754322 122333 456678888888777777766543 2344566666666677777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHhcCCHhHHHHHHHHHHH
Q 010320 452 RRVEEMESVLKEMENYKIDCSKKTFWIM--YYAYATCGQRRKVNQVLGLMCK 501 (513)
Q Consensus 452 g~~~~A~~~~~~m~~~~~~p~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~~ 501 (513)
.+.+....+++-+.+. ..|....=.++ .-+|+-.|+ .+|..+++-|..
T Consensus 585 ~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 585 RDPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred cChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 7887777777666543 34444332333 333444443 677788877754
No 414
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=49.27 E-value=1.1e+02 Score=31.29 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=57.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChh------HHHHHHHHHHHCCCCCCHHHHHHH
Q 010320 195 ALLGAYMYNGLSDKCQSLFRDLKKEA-NISPSIVTYNTLISVFGRLLLVD------HMEAAFQEIKDSNLSPNVFTYNYL 267 (513)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m~~~~-g~~p~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~g~~p~~~~~~~l 267 (513)
+|+.+|..+|++-.+..+++.+.... |-+-=...||..|+.+.+.|.++ .|.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78888999999998888888876421 22333467888888888888764 3333443333 44577888888
Q ss_pred HHHHHHccCHHHHHHHHHHHH
Q 010320 268 IAGYMTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 268 i~~~~~~g~~~~a~~~~~~m~ 288 (513)
+.+-..--+-.-..-++.+..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 776655333333333444433
No 415
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.04 E-value=3e+02 Score=27.86 Aligned_cols=72 Identities=7% Similarity=-0.093 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---C----------CCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 010320 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN---L----------SPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287 (513)
Q Consensus 221 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 287 (513)
|+..+......++... .|++..|..++++....| + .++......++.++. .|+.+.+++++++|
T Consensus 195 gi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l~~~~~l 271 (509)
T PRK14958 195 NVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLLGCVTRL 271 (509)
T ss_pred CCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 4444444444443332 355555555555544322 0 122333333444443 36777777777777
Q ss_pred HcCCCCCC
Q 010320 288 KAGPVMPD 295 (513)
Q Consensus 288 ~~~g~~p~ 295 (513)
...|..|.
T Consensus 272 ~~~g~~~~ 279 (509)
T PRK14958 272 VEQGVDFS 279 (509)
T ss_pred HHcCCCHH
Confidence 77776654
No 416
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.04 E-value=1.2e+02 Score=23.07 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320 440 LYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
-|..|+..|...|..++|.+++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 367777777777777777777777765
No 417
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=48.49 E-value=38 Score=22.86 Aligned_cols=50 Identities=4% Similarity=-0.008 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHc
Q 010320 154 MTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYN 203 (513)
Q Consensus 154 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~ 203 (513)
|....++.++..+++..-.++++..+++....|.-+..+|---++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSIDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45556677777777777777777777777776655666666666655553
No 418
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=48.18 E-value=3.4e+02 Score=28.25 Aligned_cols=114 Identities=10% Similarity=0.014 Sum_probs=60.7
Q ss_pred hHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHH
Q 010320 121 YAFVELMKQLGS-RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGA 199 (513)
Q Consensus 121 ~~~~~~l~~~~~-~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~ 199 (513)
..|..+++.+.. +.+.-.+++..+.... .....+..+++++...|-.+.+.-+.+.+....+.+...-..++..
T Consensus 347 ~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~-----~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~~ea~~~l~~l 421 (618)
T PF01347_consen 347 SKFSRLVRLLRTLSYEDLEELYKQLKSKS-----KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTDDEAAQLLASL 421 (618)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHTTS--------HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 357788888866 4455556666553321 3567888999999999988888777777777555544444444443
Q ss_pred HHHc-CChHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhc
Q 010320 200 YMYN-GLSDKCQSLFRDLKKEANISPSI-------VTYNTLISVFGRL 239 (513)
Q Consensus 200 ~~~~-g~~~~A~~~~~~m~~~~g~~p~~-------~~~~~li~~~~~~ 239 (513)
.... .--.+.++.+.+|.+....+.+. .++..++.-+|..
T Consensus 422 ~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 422 PFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 3333 22344444444444321122232 2556666666665
No 419
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=48.11 E-value=3.2e+02 Score=28.83 Aligned_cols=19 Identities=21% Similarity=-0.167 Sum_probs=10.2
Q ss_pred cCHHHHHHHHHHHHcCCCC
Q 010320 275 WMWGKVEEIYQMMKAGPVM 293 (513)
Q Consensus 275 g~~~~a~~~~~~m~~~g~~ 293 (513)
++...+++++++|...|+.
T Consensus 259 ~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 259 QDGAALLAKAQEMAACAVG 277 (709)
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 4555555555555555543
No 420
>PRK09857 putative transposase; Provisional
Probab=47.73 E-value=1.3e+02 Score=27.76 Aligned_cols=56 Identities=9% Similarity=0.128 Sum_probs=25.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010320 449 ASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQRRKVNQVLGLMCKNGYD 505 (513)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 505 (513)
.+.++.++-.++++.+.+. ++.......++..-+.+.|.-+++.++.++|...|+.
T Consensus 217 ~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 217 LQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred hhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3444444444444444433 1222223333444444445445556666666666654
No 421
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=47.72 E-value=1.3e+02 Score=23.46 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=29.0
Q ss_pred CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhc
Q 010320 150 YGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANK 185 (513)
Q Consensus 150 ~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 185 (513)
+.+.|++.+...-++++-+.+++..|..+|+-++.+
T Consensus 78 yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 78 YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 457788888888888888888888888888877764
No 422
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=47.46 E-value=85 Score=24.57 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCCccc-HhhHHHHHHHHHhcCCHHHHHHHHH
Q 010320 422 LANFVKRAESAGWRLC-RSLYHSKMVMYASQRRVEEMESVLK 462 (513)
Q Consensus 422 a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 462 (513)
..++|..|...|+--. ...|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666655554433 2334555555566666776666664
No 423
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=47.43 E-value=2.9e+02 Score=27.25 Aligned_cols=89 Identities=8% Similarity=0.015 Sum_probs=54.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH
Q 010320 198 GAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277 (513)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 277 (513)
..+...|+++.+...+....+- +.....+...++....+.|+++.|..+-+.|....++ |...........-..|-+
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~ 407 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLF 407 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHH
Confidence 3445567777777777666542 3445556677777777777777777777777765554 444433333333445666
Q ss_pred HHHHHHHHHHHc
Q 010320 278 GKVEEIYQMMKA 289 (513)
Q Consensus 278 ~~a~~~~~~m~~ 289 (513)
|++...+++...
T Consensus 408 d~~~~~wk~~~~ 419 (831)
T PRK15180 408 DKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHHhc
Confidence 777776666654
No 424
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=45.73 E-value=1.3e+02 Score=25.03 Aligned_cols=34 Identities=6% Similarity=0.010 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcC
Q 010320 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCS 345 (513)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 345 (513)
.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 41 hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3344444444444433333333333334444444
No 425
>PRK09687 putative lyase; Provisional
Probab=45.68 E-value=2.4e+02 Score=25.81 Aligned_cols=145 Identities=8% Similarity=-0.035 Sum_probs=65.4
Q ss_pred CHhHHHHHHHHHHHcCCh----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-----hHHHHHHHHHHHCCCCC
Q 010320 189 TIGTYNALLGAYMYNGLS----DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLV-----DHMEAAFQEIKDSNLSP 259 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p 259 (513)
|...-...+.++..-|+. +++...+..+..+ .++..+-...+.+++..+.- ..+...+..... .+
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~---D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~ 140 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE---DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DK 140 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc---CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CC
Confidence 334444444555555542 3455555555322 35555555555555444321 122233333222 23
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010320 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSG-NLPRMEKIYELVKHHVDGKEFPLIRAMI 338 (513)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (513)
+..+--..+.++.+.|+ .+++..+-.+.+. +|...-...+.++.+.+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44555555555655554 3445555444442 34444444455554432 12234444444332 23444455555
Q ss_pred HHHHhcCC
Q 010320 339 CAYSKCSV 346 (513)
Q Consensus 339 ~~~~~~g~ 346 (513)
.++++.|+
T Consensus 214 ~aLg~~~~ 221 (280)
T PRK09687 214 IGLALRKD 221 (280)
T ss_pred HHHHccCC
Confidence 55555554
No 426
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.57 E-value=1.6e+02 Score=26.39 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=10.3
Q ss_pred HHHHHHHcCChHHHHHHHHHH
Q 010320 196 LLGAYMYNGLSDKCQSLFRDL 216 (513)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m 216 (513)
|...|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334445555555555555544
No 427
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=45.03 E-value=1.5e+02 Score=27.24 Aligned_cols=58 Identities=10% Similarity=0.315 Sum_probs=48.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 010320 210 QSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT 273 (513)
Q Consensus 210 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 273 (513)
.++++.|... ++.|.-.++.-+.-.+.+.=.+.+++.+|+.+.. |..-|..|+..||.
T Consensus 263 ~EL~~~L~~~-~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEK-EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhc-CCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 5778888865 8999999988888888889999999999999985 55558888888875
No 428
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=45.00 E-value=58 Score=33.44 Aligned_cols=62 Identities=18% Similarity=0.072 Sum_probs=27.4
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010320 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (513)
+...-.-++..|.+.|-.+.|.++.+.+-.+ --...-|..-+..+.+.|+...+..+-+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~---~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQR---LLKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455566677777777777777777766543 1123455666666666666655555544444
No 429
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.59 E-value=4.5e+02 Score=28.60 Aligned_cols=27 Identities=33% Similarity=0.635 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320 192 TYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 466777777777777777777777764
No 430
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=43.81 E-value=3.4e+02 Score=27.02 Aligned_cols=281 Identities=9% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 010320 173 DLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEI 252 (513)
Q Consensus 173 ~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 252 (513)
+.|...++-..+. +...+...-.+.--.-+.+....+|++..+. .|+...|+..|..|...-.......+.+.|
T Consensus 268 ~laqr~l~i~~~t---dl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~---l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~ 341 (568)
T KOG2396|consen 268 DLAQRELEILSQT---DLQHTDNQAKAVEVGSKESRCCAVYEEAVKT---LPTESMWECYITFCLERFTFLRGKRILHTM 341 (568)
T ss_pred HHHHHHHHHHHHh---hccchhhhhhchhcchhHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q ss_pred H-----HCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHhc
Q 010320 253 K-----DSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHS--GNLPRMEKIYELVKHH 325 (513)
Q Consensus 253 ~-----~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--g~~~~a~~~~~~~~~~ 325 (513)
. ..+......-+......+.......++..+-..+...+++-|...|..-+....+. .---.-.+++......
T Consensus 342 ~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~ 421 (568)
T KOG2396|consen 342 CVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQ 421 (568)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q ss_pred cCCCcHHHHHHHH-HHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010320 326 VDGKEFPLIRAMI-CAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVR 404 (513)
Q Consensus 326 ~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 404 (513)
-..+-...|++.. ..+.... ....++..+..+...+..+. -+.++..+-+.|-+++|..++..+.. ..|+...
T Consensus 422 ~~s~~~~~w~s~~~~dsl~~~---~~~~Ii~a~~s~~~~~~~tl-~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~ 495 (568)
T KOG2396|consen 422 VCSELLISWASASEGDSLQED---TLDLIISALLSVIGADSVTL-KSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLD 495 (568)
T ss_pred hcchhHHHHHHHhhccchhHH---HHHHHHHHHHHhcCCceeeh-hHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHH
Q ss_pred HHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320 405 IMRCIVSSYFRCN--AVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 405 ~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
.|..+|+.=...- ++.-+.++++.|...-- -|+..|.-.+..-...|..+.+-.++.+...
T Consensus 496 l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg-~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 496 LFRKMIQFEKEQESCNLANIREYYDRALREFG-ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC-CChHHHHHHHHhhccCCCcccccHHHHHHHH
No 431
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=43.75 E-value=4.4e+02 Score=28.26 Aligned_cols=34 Identities=9% Similarity=-0.110 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCC
Q 010320 260 NVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294 (513)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 294 (513)
|...+..++..+. .|+..+++.+++++...|+..
T Consensus 245 d~~~i~~ll~aL~-~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 245 DQTYMVRLLDALA-AGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCH
Confidence 3334444555433 367777777777777766543
No 432
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=43.50 E-value=1.4e+02 Score=22.50 Aligned_cols=22 Identities=9% Similarity=0.221 Sum_probs=14.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 010320 372 LLIRVYAKEDCLEEMEKSINDA 393 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~ 393 (513)
.++..|...|+.++|...++++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3666777777888877777664
No 433
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.48 E-value=1.2e+02 Score=21.84 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=5.6
Q ss_pred CChHHHHHHHHHHH
Q 010320 310 GNLPRMEKIYELVK 323 (513)
Q Consensus 310 g~~~~a~~~~~~~~ 323 (513)
|+.+.|.++++.+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33344444444333
No 434
>PRK09857 putative transposase; Provisional
Probab=43.33 E-value=2e+02 Score=26.51 Aligned_cols=64 Identities=8% Similarity=-0.067 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCC
Q 010320 229 YNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVM 293 (513)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 293 (513)
+..++....+.++.++..++++.+.+. ........-++..-+.+.|.-+++.++.++|...|+.
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344554445555555555555555543 1112222223334444444444555555555555544
No 435
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=42.88 E-value=1.3e+02 Score=21.72 Aligned_cols=42 Identities=2% Similarity=-0.035 Sum_probs=20.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 010320 247 AAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMK 288 (513)
Q Consensus 247 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 288 (513)
++|+-....|+..|..+|.++++.+.-.=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444445555555555555544444434444444444443
No 436
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=42.55 E-value=2.4e+02 Score=24.78 Aligned_cols=54 Identities=11% Similarity=-0.062 Sum_probs=23.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHHccCHHHHHHHHHH
Q 010320 233 ISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIA----GYMTAWMWGKVEEIYQM 286 (513)
Q Consensus 233 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~----~~~~~g~~~~a~~~~~~ 286 (513)
|......|+++.|++....+-..-+.-|...+-.|.. =..+.|..++|++..+.
T Consensus 71 Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 71 IRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3344555555555555544432222223222222221 12345555666665544
No 437
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.51 E-value=1.5e+02 Score=22.48 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=17.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320 264 YNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66677777777777777777766655
No 438
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=42.48 E-value=2.4e+02 Score=24.94 Aligned_cols=39 Identities=15% Similarity=-0.022 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHH
Q 010320 293 MPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFP 332 (513)
Q Consensus 293 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 332 (513)
.|.......++..|. .+++++|.++++++.+.|+.|...
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 466667777776654 457888888888888888776443
No 439
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=41.43 E-value=3.9e+02 Score=27.00 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=13.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 010320 195 ALLGAYMYNGLSDKCQSLFRDLK 217 (513)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m~ 217 (513)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 44555666666666666666553
No 440
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.32 E-value=2e+02 Score=30.72 Aligned_cols=72 Identities=17% Similarity=0.086 Sum_probs=39.6
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010320 236 FGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRM 315 (513)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 315 (513)
+..+|+++.|++.-..+ -|..+|..|.....+.|+.+-|+..|+..+. |..|--.|.-.|+.++-
T Consensus 653 aLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred ehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 34456666665544333 2556677777777777777766666665543 33333334445665555
Q ss_pred HHHHHHH
Q 010320 316 EKIYELV 322 (513)
Q Consensus 316 ~~~~~~~ 322 (513)
.++.+..
T Consensus 718 ~Km~~ia 724 (1202)
T KOG0292|consen 718 SKMMKIA 724 (1202)
T ss_pred HHHHHHH
Confidence 4444433
No 441
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=40.77 E-value=1e+02 Score=26.53 Aligned_cols=43 Identities=23% Similarity=0.290 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCCcc-cHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010320 422 LANFVKRAESAGWRL-CRSLYHSKMVMYASQRRVEEMESVLKEM 464 (513)
Q Consensus 422 a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 464 (513)
-.++++...+.|++- -+..|+.+|+--...-+.++..+++..+
T Consensus 191 f~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 191 FEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIV 234 (236)
T ss_pred HHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHh
Confidence 334444444444321 1233455554444444455555555444
No 442
>PRK13342 recombination factor protein RarA; Reviewed
Probab=39.96 E-value=3.7e+02 Score=26.30 Aligned_cols=30 Identities=10% Similarity=0.029 Sum_probs=16.7
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010320 240 LLVDHMEAAFQEIKDSNLSPNVFTYNYLIA 269 (513)
Q Consensus 240 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 269 (513)
++.+.|+..+..|.+.|..|....-..++.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~ 273 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVII 273 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 566666666666666665554443333333
No 443
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.49 E-value=4e+02 Score=27.75 Aligned_cols=30 Identities=13% Similarity=-0.057 Sum_probs=17.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcCCCCC
Q 010320 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMP 294 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 294 (513)
...++.++.. |+...+++++++|...|..+
T Consensus 254 i~~LldaL~~-~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 254 VFRLIDALAQ-GDGRTVVETADELRLNGLSA 283 (618)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHcCCCH
Confidence 3334444433 56667777777776666544
No 444
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.34 E-value=2.8e+02 Score=25.52 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHH
Q 010320 294 PDTNTYLLLLRGYAHSGNLPRME 316 (513)
Q Consensus 294 p~~~t~~~ll~~~~~~g~~~~a~ 316 (513)
-|...|..++.+|.-.|+...+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHH
Confidence 46677788888887777665543
No 445
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.25 E-value=3.8e+02 Score=27.13 Aligned_cols=87 Identities=7% Similarity=0.090 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-c------------ccHhhHHHHHHHHH
Q 010320 383 LEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW-R------------LCRSLYHSKMVMYA 449 (513)
Q Consensus 383 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~------------p~~~~~~~li~~~~ 449 (513)
.++..+.+....+......+......++.. ..|++..|..+++++...|- . ++......+++++.
T Consensus 180 ~~~i~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~ 257 (509)
T PRK14958 180 PLQIAAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA 257 (509)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 344445555554433322233334444433 36889999999887765431 1 11222233334333
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC
Q 010320 450 SQRRVEEMESVLKEMENYKIDCS 472 (513)
Q Consensus 450 ~~g~~~~A~~~~~~m~~~~~~p~ 472 (513)
.|+.+.+..++++|...|..|.
T Consensus 258 -~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 258 -AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred -cCCHHHHHHHHHHHHHcCCCHH
Confidence 4778888888888888876554
No 446
>PRK09462 fur ferric uptake regulator; Provisional
Probab=39.23 E-value=1.8e+02 Score=23.43 Aligned_cols=35 Identities=6% Similarity=0.171 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCC
Q 010320 312 LPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346 (513)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 346 (513)
.-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 44455555555544443344433334444444443
No 447
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=38.74 E-value=4.4e+02 Score=26.83 Aligned_cols=186 Identities=9% Similarity=-0.006 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHH
Q 010320 295 DTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLI 374 (513)
Q Consensus 295 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 374 (513)
+..+|..-+.--...|+.+.+.-+|+...-.. ..-...|-..+.-....|+.+-+..+...-.+...+..... . ++-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i-~-L~~ 372 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPII-H-LLE 372 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHH-H-HHH
Confidence 45778888888888899988888888765421 11222344444444444766666555544444333332222 1 222
Q ss_pred HHHH-hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHH---HHHHHHHhcCCcccHhhHHHHHHH---
Q 010320 375 RVYA-KEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLA---NFVKRAESAGWRLCRSLYHSKMVM--- 447 (513)
Q Consensus 375 ~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~---~~~~~~~~~~~~p~~~~~~~li~~--- 447 (513)
..+. ..|+++.|..+++.....- |.....-..=+..-.+.|+.+.+. +++..... |.. +..+.+.+.--
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~-~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKE-NNGILEKLYVKFAR 448 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-ccc-CcchhHHHHHHHHH
Confidence 3333 4579999999998887753 332322222344556678888777 33333322 211 22222222222
Q ss_pred --HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010320 448 --YASQRRVEEMESVLKEMENYKIDCSKKTFWIMYYAYATCGQ 488 (513)
Q Consensus 448 --~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 488 (513)
+.-.++.+.|..++.++.+.. +++...|..+++.+...+.
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCCc
Confidence 234788999999999998764 7788888888888776663
No 448
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.55 E-value=4.3e+02 Score=26.74 Aligned_cols=31 Identities=3% Similarity=-0.209 Sum_probs=20.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcCCCCCC
Q 010320 264 YNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295 (513)
Q Consensus 264 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 295 (513)
...+++++ ..++.++|+.+++++...|..|.
T Consensus 245 if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 245 LRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 34455554 44788888888888888775543
No 449
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=38.44 E-value=75 Score=26.05 Aligned_cols=21 Identities=19% Similarity=-0.035 Sum_probs=10.6
Q ss_pred HHHHHH-cCChHHHHHHHHHHH
Q 010320 125 ELMKQL-GSRPRLALEVLNWRR 145 (513)
Q Consensus 125 ~~l~~~-~~~~~~a~~~~~~~~ 145 (513)
.+..++ .++++.|.+++..+.
T Consensus 96 ~L~~aL~~~d~~~A~~Ih~~L~ 117 (157)
T PF07304_consen 96 QLAQALQARDYDAADEIHVDLM 117 (157)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 333444 456666666665553
No 450
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.27 E-value=4e+02 Score=27.76 Aligned_cols=85 Identities=11% Similarity=0.084 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-------------ccHhhHHHHHHHH
Q 010320 383 LEEMEKSINDAFEH-KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWR-------------LCRSLYHSKMVMY 448 (513)
Q Consensus 383 ~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-------------p~~~~~~~li~~~ 448 (513)
.++..+.+.+.... |... +...+..++. ...|++..++.+++++...+.. .+......+++++
T Consensus 185 ~eei~~~L~~i~~~egi~i-e~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL 261 (618)
T PRK14951 185 PETVLEHLTQVLAAENVPA-EPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDAL 261 (618)
T ss_pred HHHHHHHHHHHHHHcCCCC-CHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44555555554443 3333 3444555544 3468999999988876544321 1122233344444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC
Q 010320 449 ASQRRVEEMESVLKEMENYKIDC 471 (513)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~~~p 471 (513)
. .|+...++.+++++.+.|..+
T Consensus 262 ~-~~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 262 A-QGDGRTVVETADELRLNGLSA 283 (618)
T ss_pred H-cCCHHHHHHHHHHHHHcCCCH
Confidence 4 478888888888888877653
No 451
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=37.80 E-value=2.4e+02 Score=28.66 Aligned_cols=101 Identities=5% Similarity=-0.074 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHH
Q 010320 380 EDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMES 459 (513)
Q Consensus 380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 459 (513)
.|+...|...+...........++. .-.|.+...+.|...+|..++....... .-.+-++-.+..+|.-..+++.|++
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~-~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVP-LVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhccc-HHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 4777777777766555333222332 2235555666777777888877766544 2234556667777888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHH
Q 010320 460 VLKEMENYKIDCSKKTFWIMYYAY 483 (513)
Q Consensus 460 ~~~~m~~~~~~p~~~~~~~li~~~ 483 (513)
.|++..+.. +.+...-+.|...-
T Consensus 698 ~~~~a~~~~-~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 698 AFRQALKLT-TKCPECENSLKLIR 720 (886)
T ss_pred HHHHHHhcC-CCChhhHHHHHHHH
Confidence 888877765 33445555544433
No 452
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.65 E-value=3.2e+02 Score=24.95 Aligned_cols=200 Identities=16% Similarity=0.110 Sum_probs=109.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHcCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHH----HhccCCCcHHHHH
Q 010320 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPDT-------NTYLLLLRGYAHSGNLPRMEKIYELV----KHHVDGKEFPLIR 335 (513)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~ 335 (513)
+.+-..+.+++++|+..|.++...|+..|. .+...+.+.|...|+...-.+..... .+...+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 455667889999999999999999988765 45566778888899887766665443 3333333445566
Q ss_pred HHHHHHHhcC-ChhHHHHHHHHHHhCCCCCcccc----hHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCchHHHH
Q 010320 336 AMICAYSKCS-VTDRIKKIEALMRLIPEKEYRPW----LNVLLIRVYAKEDCLEEMEKSINDAFE----HKTSVTTVRIM 406 (513)
Q Consensus 336 ~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 406 (513)
+|+..+.... .++...++.....+...+.-..+ .-.-++..+.+.|++.+|+.+...+.. -...+.-..++
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 6666665432 23333333222222211111111 122477888888888888877654432 22223222222
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHh----cCCcccHhhHHHHHHHH--HhcCCHHHHHHHHHHHHh
Q 010320 407 RCIVSSYFRCNAVDKLANFVKRAES----AGWRLCRSLYHSKMVMY--ASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 407 ~~li~~~~~~~~~~~a~~~~~~~~~----~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~ 466 (513)
--=-.+|....++.++..-+..++. .-++|-...---|+.+. |...++.-|..+|-+..+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 1112345555555555555544331 11223222222233322 455667777777766654
No 453
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=37.09 E-value=1e+03 Score=30.63 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320 152 TPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 152 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
.+.+.....++.+.|......|.-.-+|++-.. -.. +.....|.+.|.+++|..+|++...
T Consensus 2450 ~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~----~~e--T~~a~s~eQ~G~~e~AQ~lyekaq~ 2510 (3550)
T KOG0889|consen 2450 TKGDESCLDSLAELYRSLNEEDMFYGLWRRRAK----FPE--TMVALSYEQLGFWEEAQSLYEKAQV 2510 (3550)
T ss_pred hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhc----cHH--HHHHHHHHHhhhHHHHhhHHHHHHH
Confidence 456777888888888887776655555554221 111 2334457788899999999887654
No 454
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=36.86 E-value=3.4e+02 Score=24.99 Aligned_cols=53 Identities=6% Similarity=0.075 Sum_probs=32.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 010320 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMMKA 289 (513)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 289 (513)
.++....+.+++......++.+. ....-...+..+...|++..|++++.+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455555555555555555554 233445556666777888888887777654
No 455
>PRK12798 chemotaxis protein; Reviewed
Probab=36.80 E-value=4.1e+02 Score=25.86 Aligned_cols=152 Identities=11% Similarity=0.040 Sum_probs=77.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHHhcCChH
Q 010320 239 LLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT-AWMWGKVEEIYQMMKAGPVMPDTN----TYLLLLRGYAHSGNLP 313 (513)
Q Consensus 239 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~g~~~ 313 (513)
.|+..+|.+.|..+.-.-..+....|-.|+.+-.. ..+..+|+++|++..- .-|.+. ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 57788888888887766666677777777765554 3477788888887654 234432 2233344456677777
Q ss_pred HHHHHHHHHHhc-cCCCcHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHH
Q 010320 314 RMEKIYELVKHH-VDGKEFP-LIRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSIN 391 (513)
Q Consensus 314 ~a~~~~~~~~~~-~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 391 (513)
++..+-..-.++ ...|-.. .+..+...+.+.++-.....+..++..|....-.. +|..+...-...|+.+.|...-+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~-lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRE-LYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHH-HHHHHHHHHHHcCcHHHHHHHHH
Confidence 665554443332 2222221 22233333333333223333334444333322222 23334444444555555554444
Q ss_pred HH
Q 010320 392 DA 393 (513)
Q Consensus 392 ~~ 393 (513)
+.
T Consensus 282 ~A 283 (421)
T PRK12798 282 RA 283 (421)
T ss_pred HH
Confidence 43
No 456
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=36.47 E-value=2e+02 Score=22.14 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 010320 212 LFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSN 256 (513)
Q Consensus 212 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 256 (513)
.|..+....+-.|..+|...+...++-. -..|..++++|.+.|
T Consensus 5 ~y~~L~~~~~~~~~~vtl~elA~~l~cS--~Rn~r~lLkkm~~~g 47 (115)
T PF12793_consen 5 QYQRLWQHYGGQPVEVTLDELAELLFCS--RRNARTLLKKMQEEG 47 (115)
T ss_pred HHHHHHHHcCCCCcceeHHHHHHHhCCC--HHHHHHHHHHHHHCC
Confidence 3444443333334444555554444322 234555666666554
No 457
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.90 E-value=2.3e+02 Score=22.80 Aligned_cols=44 Identities=9% Similarity=-0.022 Sum_probs=19.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcc
Q 010320 232 LISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAW 275 (513)
Q Consensus 232 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 275 (513)
++..+...++.-.|.++++++.+.+..-+..|--.-++.+...|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 44444444444555555555554444433333333344444444
No 458
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=35.69 E-value=1.3e+02 Score=22.82 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=14.1
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccC
Q 010320 162 GIKFAGRINNVDLAADLFAEAANKHL 187 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~ 187 (513)
+++.+.++...++|+++++.|.++|-
T Consensus 67 ViD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 34444555555555555555555554
No 459
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=35.62 E-value=5.3e+02 Score=26.84 Aligned_cols=44 Identities=5% Similarity=-0.010 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010320 440 LYHSKMVMYASQRRVEEME-SVLKEMENYKIDCSKKTFWIMYYAYAT 485 (513)
Q Consensus 440 ~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~ 485 (513)
+...++..|...+.--+.. ..|..+.+ ..|+...+..+......
T Consensus 559 v~~~l~~I~~n~~e~~EvRiaA~~~lm~--~~P~~~~l~~i~~~l~~ 603 (618)
T PF01347_consen 559 VREILLPIFMNTTEDPEVRIAAYLILMR--CNPSPSVLQRIAQSLWN 603 (618)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHHHHHH--T---HHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHh--cCCCHHHHHHHHHHHhh
Confidence 3445555555444433321 11222222 23666656555554433
No 460
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=35.29 E-value=4.9e+02 Score=26.35 Aligned_cols=28 Identities=7% Similarity=0.011 Sum_probs=16.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHcCCCCCC
Q 010320 267 LIAGYMTAWMWGKVEEIYQMMKAGPVMPD 295 (513)
Q Consensus 267 li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 295 (513)
|+++.. .|+.++|+.+++++...|..|.
T Consensus 264 L~~ai~-~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 264 FVEYII-HRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 344333 3667777777777776665544
No 461
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=35.09 E-value=1.7e+02 Score=21.06 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCcccHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320 424 NFVKRAESAGWRLCRSLYHSKMVMYASQRRVEEMESVLKEMEN 466 (513)
Q Consensus 424 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 466 (513)
++|+-....|+..|...|.++++.+.-.=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666667777777777666666655556666666666653
No 462
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=34.86 E-value=2.2e+02 Score=22.70 Aligned_cols=75 Identities=8% Similarity=-0.062 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 010320 155 TKEEYTKGIKFAGRINNVDLAADLFAEAANKHLK--TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTL 232 (513)
Q Consensus 155 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~l 232 (513)
+...|...+-.--...++.+.+.+++.+.+...| ......-|.-++.+.+++++++++.+.+.+. +||..--..|
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~---e~~n~Qa~~L 110 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET---EPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh---CCCcHHHHHH
No 463
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=34.85 E-value=3.2e+02 Score=24.03 Aligned_cols=99 Identities=10% Similarity=0.061 Sum_probs=52.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHHccCHHHHHHHHHHHHcCCCCCCH
Q 010320 222 ISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSP---NVFTY--NYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDT 296 (513)
Q Consensus 222 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 296 (513)
+.++..-+|.|+--|.-...+.+|-+.|.. +.|+.| |..++ ..-|....+.|++++|++....+...-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 345555555555555544445555555543 233333 33333 33455667788888888877776543333443
Q ss_pred HHHHHHHH----HHHhcCChHHHHHHHHHH
Q 010320 297 NTYLLLLR----GYAHSGNLPRMEKIYELV 322 (513)
Q Consensus 297 ~t~~~ll~----~~~~~g~~~~a~~~~~~~ 322 (513)
..+-.|.. -..+.|..++|+++.+.=
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333322 135667777777776543
No 464
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=34.75 E-value=1.3e+02 Score=21.27 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=8.4
Q ss_pred HHHHHHHHCCCCCCC
Q 010320 494 QVLGLMCKNGYDVPV 508 (513)
Q Consensus 494 ~~~~~m~~~g~~p~~ 508 (513)
++++.+.+.|..++.
T Consensus 73 ~~~~~Ll~~g~~~~~ 87 (89)
T PF12796_consen 73 EIVKLLLEHGADVNI 87 (89)
T ss_dssp HHHHHHHHTTT-TTS
T ss_pred HHHHHHHHcCCCCCC
Confidence 455666666766664
No 465
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=34.55 E-value=4.9e+02 Score=26.14 Aligned_cols=81 Identities=14% Similarity=0.062 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHH
Q 010320 259 PNVFTYNYLIAGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMI 338 (513)
Q Consensus 259 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (513)
.|....-+++..+..+-.+.-++.+-.+|..-| -+...|..++++|... ..+.-..+|+++.+..+. |+..-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 456666677777777777777777777777744 4667777777777776 445666777777776442 333333444
Q ss_pred HHHHh
Q 010320 339 CAYSK 343 (513)
Q Consensus 339 ~~~~~ 343 (513)
.-|-+
T Consensus 140 ~~yEk 144 (711)
T COG1747 140 DKYEK 144 (711)
T ss_pred HHHHH
Confidence 44444
No 466
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=34.52 E-value=4.6e+02 Score=27.73 Aligned_cols=87 Identities=5% Similarity=0.076 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC---c----------ccHhhHHHHHHHH
Q 010320 382 CLEEMEKSINDAFEHKTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGW---R----------LCRSLYHSKMVMY 448 (513)
Q Consensus 382 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~----------p~~~~~~~li~~~ 448 (513)
..++..+.+....+.....-+...+..++... .|++..++.+++.+...|- . .+......+++++
T Consensus 179 s~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH
Confidence 34566666666665433333444455555443 6899999999988765431 1 1122233444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC
Q 010320 449 ASQRRVEEMESVLKEMENYKIDC 471 (513)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~~~p 471 (513)
. .++...++.+++++...|+.+
T Consensus 257 ~-~~d~~~al~~l~~L~~~G~d~ 278 (709)
T PRK08691 257 I-NQDGAALLAKAQEMAACAVGF 278 (709)
T ss_pred H-cCCHHHHHHHHHHHHHhCCCH
Confidence 4 477888888888888887643
No 467
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=34.35 E-value=3.5e+02 Score=24.41 Aligned_cols=25 Identities=12% Similarity=-0.003 Sum_probs=16.6
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHH
Q 010320 159 YTKGIKFAGRINNVDLAADLFAEAA 183 (513)
Q Consensus 159 ~~~ll~~~~~~g~~~~a~~~~~~m~ 183 (513)
...++..+.+.+....|.++.+.+.
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~ 109 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYR 109 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhc
Confidence 3566777777777777777666654
No 468
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.17 E-value=2.7e+02 Score=23.12 Aligned_cols=56 Identities=4% Similarity=-0.081 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCH
Q 010320 221 NISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMW 277 (513)
Q Consensus 221 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 277 (513)
|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|--.-|..+.+.|-+
T Consensus 21 GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 21 NVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred CCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 554443322 33333333444555666666666655555555444445555555544
No 469
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.12 E-value=4.2e+02 Score=26.81 Aligned_cols=86 Identities=12% Similarity=0.088 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccHhh------------HHHHHHHH
Q 010320 382 CLEEMEKSINDAFEH-KTSVTTVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCRSL------------YHSKMVMY 448 (513)
Q Consensus 382 ~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~------------~~~li~~~ 448 (513)
..++..+++....+. |... +......++.. ..|++..+...++.+...+-..+... ...+++++
T Consensus 176 s~~el~~~L~~i~~~egi~i-~~~Al~~ia~~--s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al 252 (504)
T PRK14963 176 TEEEIAGKLRRLLEAEGREA-EPEALQLVARL--ADGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL 252 (504)
T ss_pred CHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH
Confidence 345556666665543 4333 33445445433 46899999988888765432222111 23344444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC
Q 010320 449 ASQRRVEEMESVLKEMENYKIDC 471 (513)
Q Consensus 449 ~~~g~~~~A~~~~~~m~~~~~~p 471 (513)
..++.++|+.+++++...|..|
T Consensus 253 -~~~d~~~Al~~l~~Ll~~G~~~ 274 (504)
T PRK14963 253 -AQGDAAEALSGAAQLYRDGFAA 274 (504)
T ss_pred -HcCCHHHHHHHHHHHHHcCCCH
Confidence 4578888888888888887544
No 470
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.98 E-value=5e+02 Score=26.04 Aligned_cols=36 Identities=8% Similarity=-0.034 Sum_probs=21.7
Q ss_pred cHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 010320 437 CRSLYHSKMVMYASQRRVEEMESVLKEMENYKIDCS 472 (513)
Q Consensus 437 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 472 (513)
+...+..+++.....+....|+.++++|.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 333444555555554555677778888877776543
No 471
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=33.91 E-value=6.9e+02 Score=27.69 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcC--ChHHHHHHHHHHHhc
Q 010320 298 TYLLLLRGYAHSG--NLPRMEKIYELVKHH 325 (513)
Q Consensus 298 t~~~ll~~~~~~g--~~~~a~~~~~~~~~~ 325 (513)
-...++.+|++.+ ++++|+.....+++.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3455666666666 666666666666654
No 472
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.59 E-value=4.5e+02 Score=25.40 Aligned_cols=53 Identities=17% Similarity=0.073 Sum_probs=34.9
Q ss_pred HhcccCCHHHHHHHHHHHHhccCC-CH--hHHHHHHHHHH--HcCChHHHHHHHHHHHH
Q 010320 165 FAGRINNVDLAADLFAEAANKHLK-TI--GTYNALLGAYM--YNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 165 ~~~~~g~~~~a~~~~~~m~~~~~~-~~--~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 218 (513)
.+.+.+++..|.++|+.+..+ ++ +. ..|..+..+|. ..-++++|.+.|+....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344778888888888888776 54 22 24455555543 35667788888887765
No 473
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.49 E-value=1.7e+02 Score=22.00 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=8.4
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q 010320 197 LGAYMYNGLSDKCQSLFRDL 216 (513)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m 216 (513)
+..|...|+.++|...+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444444444444444443
No 474
>PHA03100 ankyrin repeat protein; Provisional
Probab=33.37 E-value=3.1e+02 Score=27.28 Aligned_cols=241 Identities=10% Similarity=0.018 Sum_probs=106.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHH-----HHHccCHHHHHHHHHHHHcCCCCCC---HHHHH
Q 010320 231 TLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFT--YNYLIAG-----YMTAWMWGKVEEIYQMMKAGPVMPD---TNTYL 300 (513)
Q Consensus 231 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~-----~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~ 300 (513)
+.+...++.|+.+- ++.+.+.|..|+... ....+.. .+..|..+ +.+.+.+.|..++ ....+
T Consensus 37 t~L~~A~~~~~~~i----vk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~----iv~~Ll~~ga~i~~~d~~g~t 108 (480)
T PHA03100 37 LPLYLAKEARNIDV----VKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKE----IVKLLLEYGANVNAPDNNGIT 108 (480)
T ss_pred hhhhhhhccCCHHH----HHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHH----HHHHHHHCCCCCCCCCCCCCc
Confidence 45555667777654 444456677666432 2234444 44444433 3444555665543 22233
Q ss_pred HHHHHHH-hcCChHHHHHHHHHHHhccCCCcHHH--HHHHHHHHHhcC--ChhHHHHHHHHHHhCCC----CCcccchHH
Q 010320 301 LLLRGYA-HSGNLPRMEKIYELVKHHVDGKEFPL--IRAMICAYSKCS--VTDRIKKIEALMRLIPE----KEYRPWLNV 371 (513)
Q Consensus 301 ~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g--~~~~a~~~~~~~~~~~~----~~~~~~~~~ 371 (513)
.|..+.. ..|+.+-+.. +.+.|..++... -...+...+..| +.+ +.+.+.+... .+....
T Consensus 109 pL~~A~~~~~~~~~iv~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----iv~~Ll~~g~din~~d~~g~--- 177 (480)
T PHA03100 109 PLLYAISKKSNSYSIVEY----LLDNGANVNIKNSDGENLLHLYLESNKIDLK----ILKLLIDKGVDINAKNRYGY--- 177 (480)
T ss_pred hhhHHHhcccChHHHHHH----HHHcCCCCCccCCCCCcHHHHHHHcCCChHH----HHHHHHHCCCCcccccCCCC---
Confidence 4443332 6666554444 444554442221 123445555555 444 3333333221 111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcccH---hhH
Q 010320 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVT-------TVRIMRCIVSSYFRCNAVDKLANFVKRAESAGWRLCR---SLY 441 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~ 441 (513)
..+...+..|+.+-+.-+++ .|..+. ....+...+...+..|+ ...++++.+.+.|..++. ...
T Consensus 178 tpL~~A~~~~~~~iv~~Ll~----~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~ 251 (480)
T PHA03100 178 TPLHIAVEKGNIDVIKFLLD----NGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGF 251 (480)
T ss_pred CHHHHHHHhCCHHHHHHHHH----cCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCC
Confidence 24556667777665555543 332221 11111334444455555 112334444455655432 223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHhHHHHHHHHHHHCCCC
Q 010320 442 HSKMVMYASQRRVEEMESVLKEMENYKIDCSKKTFW--IMYYAYATCGQRRKVNQVLGLMCKNGYD 505 (513)
Q Consensus 442 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~ 505 (513)
+.| ...+..|+.+ +++.+.+.|..++..... +-+....+.++. ++++.+.+.|..
T Consensus 252 TpL-~~A~~~~~~~----iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~----~iv~~Ll~~g~~ 308 (480)
T PHA03100 252 TPL-HYAVYNNNPE----FVKYLLDLGANPNLVNKYGDTPLHIAILNNNK----EIFKLLLNNGPS 308 (480)
T ss_pred CHH-HHHHHcCCHH----HHHHHHHcCCCCCccCCCCCcHHHHHHHhCCH----HHHHHHHhcCCC
Confidence 333 3344556644 344444555444332111 223333445554 345555555653
No 475
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.95 E-value=5.2e+02 Score=25.93 Aligned_cols=100 Identities=10% Similarity=-0.062 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 010320 208 KCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMTAWMWGKVEEIYQMM 287 (513)
Q Consensus 208 ~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 287 (513)
+..+.+....+..|+..+......++.. ..|++..|+.++++....+ ....++..+ .+++
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i~~~--~~~it~~~V-------------~~~l--- 243 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAIVFT--DSKLTGVKI-------------RKMI--- 243 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHHHhC--CCCcCHHHH-------------HHHh---
Confidence 3444455444434666666665555433 3577788888877765321 011122211 1111
Q ss_pred HcCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCcH
Q 010320 288 KAGPVMPDTNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKEF 331 (513)
Q Consensus 288 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 331 (513)
|+ .+...+..++.++...+....|..+++++.+.|..|..
T Consensus 244 ---g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~ 283 (484)
T PRK14956 244 ---GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYK 283 (484)
T ss_pred ---CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHH
Confidence 22 25555556666655554556677777777777765543
No 476
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=32.92 E-value=4.2e+02 Score=24.84 Aligned_cols=118 Identities=10% Similarity=0.045 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---ccCHHHHHHH
Q 010320 207 DKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLIAGYMT---AWMWGKVEEI 283 (513)
Q Consensus 207 ~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~a~~~ 283 (513)
+.-+.++++..+. .+-+....-.+|..+.+..+.+...+.++++...... +...|-..|..... .-.++.+.++
T Consensus 48 E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 4445556665543 2334445555666666666666666666666654321 45555555544333 1134444444
Q ss_pred HHHHHc------CCC----CCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHhccC
Q 010320 284 YQMMKA------GPV----MPD-------TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVD 327 (513)
Q Consensus 284 ~~~m~~------~g~----~p~-------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 327 (513)
|.+..+ .|. .+- ...+.-+...+...|-.+.|..+++.+.+.++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 443221 111 011 12333334445678889999999988887544
No 477
>COG0819 TenA Putative transcription activator [Transcription]
Probab=32.81 E-value=2.8e+02 Score=24.23 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=27.2
Q ss_pred HHCCCCCCHHHHHHHHHHHHHccCHHHHHH-----------HHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010320 253 KDSNLSPNVFTYNYLIAGYMTAWMWGKVEE-----------IYQMMKAGPVMPDTNTYLLLLRGYAH 308 (513)
Q Consensus 253 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~-----------~~~~m~~~g~~p~~~t~~~ll~~~~~ 308 (513)
.+....|....|+..|...+..|++.+..- +...+...+.......|...++.|+.
T Consensus 101 ~~~~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s 167 (218)
T COG0819 101 LKTEPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYAS 167 (218)
T ss_pred HhcCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCC
Confidence 333444555555555555555555444321 22233333332345567777777653
No 478
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=32.81 E-value=2.2e+02 Score=21.60 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=6.2
Q ss_pred hcCcHHHHHHHHHHHH
Q 010320 415 RCNAVDKLANFVKRAE 430 (513)
Q Consensus 415 ~~~~~~~a~~~~~~~~ 430 (513)
+.|--+++...+.++.
T Consensus 81 klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 81 KLGLASALESRLTRLA 96 (116)
T ss_dssp HCT-HHHHHHHHHHHC
T ss_pred hhccHHHHHHHHHHHH
Confidence 3444444444444433
No 479
>PRK10941 hypothetical protein; Provisional
Probab=32.71 E-value=3.8e+02 Score=24.36 Aligned_cols=57 Identities=11% Similarity=-0.003 Sum_probs=23.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010320 338 ICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEH 396 (513)
Q Consensus 338 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 396 (513)
-.+|.+.++++.|..+.+.+-.+.+.+...+- --.-.|.+.|++..|..=++..++.
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~R--DRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQFDPEDPYEIR--DRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 33444444444444444444444333332221 1222344455555555544444443
No 480
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=32.54 E-value=1.1e+02 Score=23.17 Aligned_cols=37 Identities=11% Similarity=0.159 Sum_probs=16.2
Q ss_pred CChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCC
Q 010320 310 GNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSV 346 (513)
Q Consensus 310 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 346 (513)
+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3333444455555444433344433334444444443
No 481
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=31.97 E-value=4.7e+02 Score=25.17 Aligned_cols=98 Identities=5% Similarity=0.013 Sum_probs=63.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH------------HHHHHHhcCcHHHHHHHHHHHHhcCC-cccH
Q 010320 372 LLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRC------------IVSSYFRCNAVDKLANFVKRAESAGW-RLCR 438 (513)
Q Consensus 372 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------------li~~~~~~~~~~~a~~~~~~~~~~~~-~p~~ 438 (513)
.+...+-..|++++|..++.+..- .||.+ =++.|...+++-.|.-+-+++...-+ .|+.
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~V--------ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~ 207 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQV--------ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDV 207 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcch--------hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccH
Confidence 577788888999999988765432 22322 24566667777777776666643322 2332
Q ss_pred -----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHH
Q 010320 439 -----SLYHSKMVMYASQRRVEEMESVLKEMENYK-IDCSKKTFW 477 (513)
Q Consensus 439 -----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~ 477 (513)
..|+.+|......+.+-.+.+.|+..-..| ++-|+.-|.
T Consensus 208 ~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~ 252 (439)
T KOG1498|consen 208 QELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWI 252 (439)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhh
Confidence 337888888888888888888888877654 333333344
No 482
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=31.54 E-value=5.5e+02 Score=26.30 Aligned_cols=146 Identities=14% Similarity=0.024 Sum_probs=86.9
Q ss_pred cCchhHHHHHHHHHcCC--h--HHHHHHHHHHHHcCCCCCCCCHHHHHH--HHHHh-cccCCHHHHHHHHHHHHhccCC-
Q 010320 117 HSNGYAFVELMKQLGSR--P--RLALEVLNWRRRQAGYGTPMTKEEYTK--GIKFA-GRINNVDLAADLFAEAANKHLK- 188 (513)
Q Consensus 117 ~p~~~~~~~~l~~~~~~--~--~~a~~~~~~~~~~~~~g~~~~~~~~~~--ll~~~-~~~g~~~~a~~~~~~m~~~~~~- 188 (513)
.|+..+.-..+..++.. + +-+..++..|.. |+...|.. +...| ...|+...|...+.......+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-------~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~ 640 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-------PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQ 640 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-------CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhh
Confidence 45666666666666542 1 223344444422 22223322 22233 3468888888887766544332
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010320 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIKDSNLSPNVFTYNYLI 268 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 268 (513)
..+..-.|.+...+.|...+|..++.+-..- . .....++-.+.+++.-..+++.|++.|++..+... .+...-+.|.
T Consensus 641 ~~v~~v~la~~~~~~~~~~da~~~l~q~l~~-~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~-~~~~~~~~l~ 717 (886)
T KOG4507|consen 641 QDVPLVNLANLLIHYGLHLDATKLLLQALAI-N-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT-KCPECENSLK 717 (886)
T ss_pred hcccHHHHHHHHHHhhhhccHHHHHHHHHhh-c-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC-CChhhHHHHH
Confidence 4445556666777777888888888877653 2 33445677788888888888999888888776533 2445555555
Q ss_pred HHHH
Q 010320 269 AGYM 272 (513)
Q Consensus 269 ~~~~ 272 (513)
..-|
T Consensus 718 ~i~c 721 (886)
T KOG4507|consen 718 LIRC 721 (886)
T ss_pred HHHH
Confidence 4433
No 483
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=31.21 E-value=5.3e+02 Score=25.56 Aligned_cols=111 Identities=8% Similarity=-0.016 Sum_probs=82.6
Q ss_pred hhHHHHHHhhhCCccccccCchhHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHH
Q 010320 99 LDKVFRVLDEKGSCLFRRHSNGYAFVELMKQLGSRPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADL 178 (513)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~ 178 (513)
+..++++++.. ...|+.+.+-+.+..--+.++.+.+.+.-...-- .....+..++++...+.|++++|..+
T Consensus 309 s~~~~~~lr~~-----~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~----~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 309 SQQLFAALRNQ-----QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII----GTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred HHHHHHHHHhC-----CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh----cCCchHHHHHHHhhhchhhHHHHHHH
Confidence 44556666554 4478888888888777788888888877665542 33566788999999999999999999
Q ss_pred HHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320 179 FAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 179 ~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
-+-|....+.+.+.........-..|-++++.-.++++..
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 9999887776666655555555556778888888888764
No 484
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=31.07 E-value=2.1e+02 Score=20.78 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=16.3
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010320 189 TIGTYNALLGAYMYNGLSDKCQSLFRDLKK 218 (513)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (513)
|...--.+...+...|++++|++.+-++.+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555556666666666666555554
No 485
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=31.05 E-value=3e+02 Score=26.88 Aligned_cols=49 Identities=8% Similarity=-0.031 Sum_probs=28.3
Q ss_pred HHHHHHHcCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCc
Q 010320 282 EIYQMMKAGPVMPD--TNTYLLLLRGYAHSGNLPRMEKIYELVKHHVDGKE 330 (513)
Q Consensus 282 ~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 330 (513)
++--.+-.-.++|. .-+....|..+.+.+++..|-.+-+++.+.+..+.
T Consensus 284 ELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 284 ELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 33333333344443 33555667777888899999888888888754443
No 486
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=31.02 E-value=41 Score=22.53 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=14.7
Q ss_pred CChHHHHHHHHHHHHhCCCCCCH
Q 010320 204 GLSDKCQSLFRDLKKEANISPSI 226 (513)
Q Consensus 204 g~~~~A~~~~~~m~~~~g~~p~~ 226 (513)
-+++.|+..|.++.....++|+.
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhh
Confidence 46777777777777654455543
No 487
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=30.90 E-value=2.4e+02 Score=21.42 Aligned_cols=77 Identities=13% Similarity=0.097 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHcCChHHHHHH
Q 010320 133 RPRLALEVLNWRRRQAGYGTPMTKEEYTKGIKFAGRINNVDLAADLFAEAANKHLKTIGTYNALLGAYMYNGLSDKCQSL 212 (513)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 212 (513)
.-++|..+.+|+...++ ....+--+-+..+.+.|++++| +..-.....||...|-+|-. .+.|-.+++...
T Consensus 21 cH~EA~tIa~wL~~~~~----~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE----MEEVVALIRLSSLMNRGDYQEA---LLLPQCHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp -HHHHHHHHHHHHHTTT----THHHHHHHHHHHHHHTT-HHHH---HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHHhhHHHHHH---HHhcccCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 45567777777766442 1222222334445667777776 22222233345555555433 456666666666
Q ss_pred HHHHHH
Q 010320 213 FRDLKK 218 (513)
Q Consensus 213 ~~~m~~ 218 (513)
+.++..
T Consensus 92 l~rla~ 97 (116)
T PF09477_consen 92 LTRLAS 97 (116)
T ss_dssp HHHHCT
T ss_pred HHHHHh
Confidence 665553
No 488
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=30.84 E-value=3.8e+02 Score=29.08 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=11.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHH
Q 010320 478 IMYYAYATCGQRRKVNQVLGLMC 500 (513)
Q Consensus 478 ~li~~~~~~g~~~~A~~~~~~m~ 500 (513)
.+...+...++-+...+.+.+..
T Consensus 556 ~la~~f~~~~~a~vl~~al~e~l 578 (824)
T PRK07764 556 GLARRFASPGNAEVLVTALAEEL 578 (824)
T ss_pred HHHHHHhcccchHHHHHHHHHHh
Confidence 34455555555555555555443
No 489
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.74 E-value=2.3e+02 Score=22.79 Aligned_cols=60 Identities=15% Similarity=0.004 Sum_probs=35.8
Q ss_pred HHhcCCCCchHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHhcCCH
Q 010320 393 AFEHKTSVTTVRIMRCIVSSYFRC-NAVDKLANFVKRAESAGWRLCRSLYHSKMVMYASQRRV 454 (513)
Q Consensus 393 ~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 454 (513)
+.+.|...+... ..++..+... +..-.|.++++.+.+.+...+..|.---++.+...|-+
T Consensus 8 l~~~glr~T~qR--~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLPR--LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHHH--HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 344454444332 3455555544 35667888888888777666666655556666666654
No 490
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=30.55 E-value=2.3e+02 Score=21.66 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=16.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 010320 444 KMVMYASQRRVEEMESVLKEMENYK 468 (513)
Q Consensus 444 li~~~~~~g~~~~A~~~~~~m~~~~ 468 (513)
+|+.+-+|...++|+++++-|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4555666677777777777777666
No 491
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=30.32 E-value=1e+02 Score=23.75 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=21.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCCh
Q 010320 301 LLLRGYAHSGNLPRMEKIYELVKHHVDGKEFPLIRAMICAYSKCSVT 347 (513)
Q Consensus 301 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (513)
.++..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 34444444444445555555555554444444433444555555533
No 492
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=30.23 E-value=4.7e+02 Score=26.61 Aligned_cols=78 Identities=13% Similarity=0.052 Sum_probs=41.3
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010320 317 KIYELVKHHVDGKEFPLIRAMICAYSKCSVT-DRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFE 395 (513)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 395 (513)
++++.....+...+ ..+-++......+.- +--.++++.+-+.......+.++ .++.++...++.+.|.++++++.+
T Consensus 160 diie~~l~~~~d~d--i~~ylL~Lait~v~~~~fr~~ilr~l~~~~~~~~~pdyf-~v~k~vv~LnDa~~a~~L~~kL~~ 236 (926)
T COG5116 160 DIIEKYLSDGNDCD--IINYLLDLAITLVEEEGFRKEILRMLAEIGPGKPKPDYF-YVIKAVVYLNDAEKAKALIEKLVK 236 (926)
T ss_pred HHHHHHHhCCCccc--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCCcEE-EEeEEEEEeccHHHHHHHHHHHHh
Confidence 34445555555444 233344433332211 12224445454444444344422 377788888888888888888777
Q ss_pred cC
Q 010320 396 HK 397 (513)
Q Consensus 396 ~~ 397 (513)
.+
T Consensus 237 en 238 (926)
T COG5116 237 EN 238 (926)
T ss_pred hh
Confidence 53
No 493
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=30.08 E-value=1.7e+02 Score=19.47 Aligned_cols=12 Identities=8% Similarity=0.138 Sum_probs=4.2
Q ss_pred CCHHHHHHHHHH
Q 010320 381 DCLEEMEKSIND 392 (513)
Q Consensus 381 ~~~~~a~~~~~~ 392 (513)
|++=+|-+++++
T Consensus 13 g~f~EaHEvlE~ 24 (62)
T PF03745_consen 13 GDFFEAHEVLEE 24 (62)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHhHHHHHH
Confidence 333333333333
No 494
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=29.78 E-value=1.6e+02 Score=22.42 Aligned_cols=43 Identities=16% Similarity=0.036 Sum_probs=22.0
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 010320 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAHSGN 311 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 311 (513)
..+...+..-.|.++++.+.+.+...+..|..-.|+.+...|-
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3333334444555555555555544555555555555555554
No 495
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.10 E-value=2.1e+02 Score=20.24 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 010320 443 SKMVMYASQRRVEEMESVLKEMENYKIDCSKK 474 (513)
Q Consensus 443 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 474 (513)
++++.+.++.-.++|+++++-|.+.| ..+..
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E 66 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPE 66 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHH
Confidence 34566677777777777777777766 33443
No 496
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=28.95 E-value=96 Score=21.56 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=17.3
Q ss_pred ccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 010320 274 AWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGY 306 (513)
Q Consensus 274 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 306 (513)
.|+.+.+.+++++....|+.|.......+..+.
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m 46 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAM 46 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455566666666666555555554444444444
No 497
>PF13934 ELYS: Nuclear pore complex assembly
Probab=28.49 E-value=4.1e+02 Score=23.37 Aligned_cols=106 Identities=8% Similarity=0.091 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcccchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q 010320 334 IRAMICAYSKCSVTDRIKKIEALMRLIPEKEYRPWLNVLLIRVYAKEDCLEEMEKSINDAFEHKTSVTTVRIMRCIVSSY 413 (513)
Q Consensus 334 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 413 (513)
|..++.++.-..+ .+-+++.+. +..+...+|.-.-++.++...|+.+.|..+++.+... ..+......++..
T Consensus 79 ~~~~~~g~W~LD~-~~~~~A~~~---L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~---l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDH-GDFEEALEL---LSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPP---LSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhCh-HhHHHHHHH---hCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC---CCCHHHHHHHHHH-
Confidence 3445666554433 122233333 3444444553334677777777777777777553322 2222223333333
Q ss_pred HhcCcHHHHHHHHHHHHhcCCcccHhhHHHHHHHHHh
Q 010320 414 FRCNAVDKLANFVKRAESAGWRLCRSLYHSKMVMYAS 450 (513)
Q Consensus 414 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 450 (513)
..++.+.+|..+.+...+.. ....+..++..+..
T Consensus 151 La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLE 184 (226)
T ss_pred HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHH
Confidence 44577777777766544311 13345555555543
No 498
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.12 E-value=2.1e+02 Score=20.26 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=13.3
Q ss_pred HHHHhcccCCHHHHHHHHHHHHhccC
Q 010320 162 GIKFAGRINNVDLAADLFAEAANKHL 187 (513)
Q Consensus 162 ll~~~~~~g~~~~a~~~~~~m~~~~~ 187 (513)
+++.+.++.-.++|+++++.|.++|-
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 34444455555555555555555543
No 499
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.52 E-value=3.8e+02 Score=22.71 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=19.7
Q ss_pred HHHHHccCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 010320 269 AGYMTAWMWGKVEEIYQMMKAGPVMPDTNTYLLLLRGYAH 308 (513)
Q Consensus 269 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 308 (513)
..|.+.|.+++|.++++.... .|+......-+....+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~ 155 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHH
Confidence 346666666677666666655 2344443333333333
No 500
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=27.43 E-value=4.5e+02 Score=23.44 Aligned_cols=45 Identities=4% Similarity=-0.074 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 010320 206 SDKCQSLFRDLKKEANISPSIVTYNTLISVFGRLLLVDHMEAAFQEIK 253 (513)
Q Consensus 206 ~~~A~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 253 (513)
.++|..+++.-.. -..|..+...+..++...|+...+.++++.+.
T Consensus 115 i~kA~~~L~~~~~---~~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~ 159 (246)
T PF07678_consen 115 INKALNYLERHLD---NIQDPYTLALVAYALALAGDSPQASKLLNKLN 159 (246)
T ss_dssp HHHHHHHHHHHHG---CTSSHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc---ccCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 3445555544432 13555555555566666666667777766665
Done!