BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010324
(513 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 156/320 (48%), Gaps = 26/320 (8%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQAD 257
P ++ +KF H + +FSP+G++L S S D I++ W GK +K
Sbjct: 30 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI-WGAYDGKFEK------- 81
Query: 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 82 -TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 139
Query: 318 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 140 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Query: 378 LKSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKS 434
S CL+T PP+ S F N +I+ +++ + +G+ +K+
Sbjct: 200 TASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
Query: 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494
++ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 252 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Query: 495 HRNLLATYG--EDCTMKLWK 512
N++A+ D T+KLWK
Sbjct: 312 TENIIASAALENDKTIKLWK 331
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 156/320 (48%), Gaps = 26/320 (8%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQAD 257
P ++ +KF H + +FSP+G++L S S D I++ W GK +K
Sbjct: 32 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI-WGAYDGKFEK------- 83
Query: 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 84 -TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 141
Query: 318 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 142 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Query: 378 LKSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKS 434
S CL+T PP+ S F N +I+ +++ + +G+ +K+
Sbjct: 202 TASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 253
Query: 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494
++ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 254 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 313
Query: 495 HRNLLATYG--EDCTMKLWK 512
N++A+ D T+KLWK
Sbjct: 314 TENIIASAALENDKTIKLWK 333
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 156/320 (48%), Gaps = 26/320 (8%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQAD 257
P ++ +KF H + +FSP+G++L S S D I++ W GK +K
Sbjct: 25 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI-WGAYDGKFEK------- 76
Query: 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 77 -TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 134
Query: 318 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 135 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Query: 378 LKSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKS 434
S CL+T PP+ S F N +I+ +++ + +G+ +K+
Sbjct: 195 TASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 246
Query: 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494
++ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 247 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 306
Query: 495 HRNLLATYG--EDCTMKLWK 512
N++A+ D T+KLWK
Sbjct: 307 TENIIASAALENDKTIKLWK 326
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 156/320 (48%), Gaps = 26/320 (8%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQAD 257
P ++ +KF H + +FSP+G++L S S D I++ W GK +K
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI-WGAYDGKFEK------- 59
Query: 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 60 -TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 117
Query: 318 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 118 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Query: 378 LKSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKS 434
S CL+T PP+ S F N +I+ +++ + +G+ +K+
Sbjct: 178 TASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
Query: 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494
++ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 289
Query: 495 HRNLLATYG--EDCTMKLWK 512
N++A+ D T+KLWK
Sbjct: 290 TENIIASAALENDKTIKLWK 309
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 156/320 (48%), Gaps = 26/320 (8%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQAD 257
P ++ +KF H + +FSP+G++L S S D I++ W GK +K
Sbjct: 4 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI-WGAYDGKFEK------- 55
Query: 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 56 -TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 113
Query: 318 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 114 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
Query: 378 LKSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKS 434
S CL+T PP+ S F N +I+ +++ + +G+ +K+
Sbjct: 174 TASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225
Query: 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494
++ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 226 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 285
Query: 495 HRNLLATYG--EDCTMKLWK 512
N++A+ D T+KLWK
Sbjct: 286 TENIIASAALENDKTIKLWK 305
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 156/320 (48%), Gaps = 26/320 (8%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQAD 257
P ++ +KF H + +FSP+G++L S S D I++ W GK +K
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI-WGAYDGKFEK------- 65
Query: 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 66 -TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 123
Query: 318 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 124 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 378 LKSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKS 434
S CL+T PP+ S F N +I+ +++ + +G+ +K+
Sbjct: 184 TASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Query: 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494
++ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 295
Query: 495 HRNLLATYG--EDCTMKLWK 512
N++A+ D T+KLWK
Sbjct: 296 TENIIASAALENDKTIKLWK 315
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 59/107 (55%)
Query: 282 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 341
GS + K ++ L+ H++ V+S+ FS +G + S+S D +I G GK
Sbjct: 4 GSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 63
Query: 342 LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 388
K GH ++D +++D + +V+AS D T+K+WD+ S CL+T K
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 156/320 (48%), Gaps = 26/320 (8%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQAD 257
P ++ +KF H + +FSP+G++L S S D I++ W GK +K
Sbjct: 13 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI-WGAYDGKFEK------- 64
Query: 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 65 -TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 122
Query: 318 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 123 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
Query: 378 LKSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKS 434
S CL+T PP+ S F N +I+ +++ + +G+ +K+
Sbjct: 183 TASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 234
Query: 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494
++ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 235 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 294
Query: 495 HRNLLATYG--EDCTMKLWK 512
N++A+ D T+KLWK
Sbjct: 295 TENIIASAALENDKTIKLWK 314
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 156/320 (48%), Gaps = 26/320 (8%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQAD 257
P ++ +KF H + +FSP+G++L S S D I++ W GK +K
Sbjct: 7 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI-WGAYDGKFEK------- 58
Query: 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 59 -TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 116
Query: 318 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 117 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Query: 378 LKSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKS 434
S CL+T PP+ S F N +I+ +++ + +G+ +K+
Sbjct: 177 TASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 228
Query: 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494
++ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 229 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 288
Query: 495 HRNLLATYG--EDCTMKLWK 512
N++A+ D T+KLWK
Sbjct: 289 TENIIASAALENDKTIKLWK 308
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 156/320 (48%), Gaps = 26/320 (8%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQAD 257
P ++ +KF H + +FSP+G++L S S D I++ W GK +K
Sbjct: 9 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI-WGAYDGKFEK------- 60
Query: 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 61 -TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 118
Query: 318 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 119 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
Query: 378 LKSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKS 434
S CL+T PP+ S F N +I+ +++ + +G+ +K+
Sbjct: 179 TASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 230
Query: 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494
++ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 231 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 290
Query: 495 HRNLLATYG--EDCTMKLWK 512
N++A+ D T+KLWK
Sbjct: 291 TENIIASAALENDKTIKLWK 310
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 156/320 (48%), Gaps = 26/320 (8%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQAD 257
P ++ +KF H + +FSP+G++L S S D I++ W GK +K
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI-WGAYDGKFEK------- 59
Query: 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 60 -TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 117
Query: 318 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 118 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Query: 378 LKSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKS 434
S CL+T PP+ S F N +I+ +++ + +G+ +K+
Sbjct: 178 TASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
Query: 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494
++ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 230 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 289
Query: 495 HRNLLATYG--EDCTMKLWK 512
N++A+ D T+KLWK
Sbjct: 290 TENIIASAALENDKTIKLWK 309
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 156/320 (48%), Gaps = 26/320 (8%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQAD 257
P ++ +KF H + +FSP+G++L S S D I++ W GK +K
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI-WGAYDGKFEK------- 65
Query: 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 66 -TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 123
Query: 318 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 124 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 378 LKSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKS 434
S CL+T PP+ S F N +I+ +++ + +G+ +K+
Sbjct: 184 TASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Query: 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494
++ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 295
Query: 495 HRNLLATYG--EDCTMKLWK 512
N++A+ D T+KLWK
Sbjct: 296 TENIIASAALENDKTIKLWK 315
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 60/109 (55%)
Query: 280 ASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG 339
A GS + K ++ L+ H++ V+S+ FS +G + S+S D +I G G
Sbjct: 2 AMGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 61
Query: 340 KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 388
K K GH ++D +++D + +V+AS D T+K+WD+ S CL+T K
Sbjct: 62 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 156/320 (48%), Gaps = 26/320 (8%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQAD 257
P ++ +KF H + +FSP+G++L S S D I++ W GK +K
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI-WGAYDGKFEK------- 65
Query: 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 66 -TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 123
Query: 318 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
+ I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD
Sbjct: 124 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 378 LKSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKS 434
S CL+T PP+ S F N +I+ +++ + +G+ +K+
Sbjct: 184 TASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Query: 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494
++ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 295
Query: 495 HRNLLATYG--EDCTMKLWK 512
N++A+ D T+KLWK
Sbjct: 296 TENIIASAALENDKTIKLWK 315
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%)
Query: 282 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 341
GS + + K ++ L+ H++ V+S+ FS +G + S+S D +I G GK
Sbjct: 4 GSPEFQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 63
Query: 342 LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 388
K GH ++D +++D + +V+AS D T+K+WD+ S CL+T K
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 110
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 155/316 (49%), Gaps = 26/316 (8%)
Query: 205 SHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFM 261
++ +KF H + +FSP+G++L + S D I++ W GK +K T
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKI-WGAYDGKFEK--------TIS 65
Query: 262 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQ 321
H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+ +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNL 124
Query: 322 ILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKST 381
I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD S
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 382 DCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSFSSG 438
CL+T PP+ S F N +I+ +++ + +G+ +K+++
Sbjct: 185 QCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 439 KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNL 498
K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP N+
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 499 LATYG--EDCTMKLWK 512
+A+ D T+KLWK
Sbjct: 297 IASAALENDKTIKLWK 312
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 55/96 (57%)
Query: 293 IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYV 352
++ L+ H++ V+S+ FS +G + ++S D +I G GK K GH +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 353 NDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 388
+D +++D + +V+AS D T+K+WD+ S CL+T K
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 154/320 (48%), Gaps = 26/320 (8%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQAD 257
P ++ + F H + +FSP+G++L S S D I++ W GK +K
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI-WGAYDGKFEK------- 62
Query: 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 63 -TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 120
Query: 318 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
+ I+S SFD + RI +K+G LK HS V+ F DGS +V++S D ++WD
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 378 LKSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKS 434
S CL+T PP+ S F N +I+ +++ + +G+ +K+
Sbjct: 181 TASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 232
Query: 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494
++ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 495 HRNLLATYG--EDCTMKLWK 512
N++A+ D T+KLWK
Sbjct: 293 TENIIASAALENDKTIKLWK 312
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 153/320 (47%), Gaps = 26/320 (8%)
Query: 201 PTTLSHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQAD 257
P ++ + F H + +FSP+G++L S S D I++ W GK +K
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI-WGAYDGKFEK------- 62
Query: 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 317
T H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+
Sbjct: 63 -TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNP 120
Query: 318 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
+ I+S SFD + RI +K+G LK HS V+ F DGS +V++S D ++WD
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 378 LKSTDCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKS 434
S CL+T PP+ S F N +I+ + + + +G+ +K+
Sbjct: 181 TASGQCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKT 232
Query: 435 FSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494
++ K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP
Sbjct: 233 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 495 HRNLLATYG--EDCTMKLWK 512
N++A+ D T+KLWK
Sbjct: 293 TENIIASAALENDKTIKLWK 312
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 155/316 (49%), Gaps = 26/316 (8%)
Query: 205 SHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFM 261
++ +KF H + +FSP+G++L S S D I++ W GK +K T
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI-WGAYDGKFEK--------TIS 65
Query: 262 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQ 321
H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+ +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNL 124
Query: 322 ILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKST 381
I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD S
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 382 DCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSFSSG 438
CL+T PP+ S F N +I+ +++ + +G+ +K+++
Sbjct: 185 QCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 439 KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNL 498
K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP N+
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 499 LATYG--EDCTMKLWK 512
+A+ D T+KL+K
Sbjct: 297 IASAALENDKTIKLYK 312
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%)
Query: 293 IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYV 352
++ L+ H++ V+S+ FS +G + S+S D +I G GK K GH +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 353 NDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 388
+D +++D + +V+AS D T+K+WD+ S CL+T K
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 155/316 (49%), Gaps = 26/316 (8%)
Query: 205 SHTIKFGTKSHAECA---RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFM 261
++ +KF H + +FSP+G++L S S D I++ W GK +K T
Sbjct: 15 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKI-WGAYDGKFEK--------TIS 65
Query: 262 MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQ 321
H + + +S DS +L S S D +K+W + SG+CL+ L + HS V F+ +
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-KGHSNYVFCCNFNPQSNL 124
Query: 322 ILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKST 381
I+S SFD + RI +K+GK LK HS V+ F DGS +V++S D ++WD S
Sbjct: 125 IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 382 DCLQTF--KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVKSFSSG 438
CL+T PP+ S F N +I+ +++ + +G+ +K+++
Sbjct: 185 QCLKTLIDDDNPPV--------SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 439 KREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNL 498
K E A G+WI ED +Y ++ Q+ ++ ++ H VI HP N+
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 499 LATYG--EDCTMKLWK 512
+A+ D T+KL+K
Sbjct: 297 IASAALENDKTIKLFK 312
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%)
Query: 293 IRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYV 352
++ L+ H++ V+S+ FS +G + S+S D +I G GK K GH +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 353 NDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 388
+D +++D + +V+AS D T+K+WD+ S CL+T K
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK 107
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 144/302 (47%), Gaps = 25/302 (8%)
Query: 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCI 270
G S FSPDGQ + S S D ++ +W+ +G+L +T H +V +
Sbjct: 96 GHSSSVRGVAFSPDGQTIASASDDKTVK-LWNR-NGQLL--------QTLTGHSSSVWGV 145
Query: 271 EFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDST 330
FS D + +AS S D +K+W R+GQ L+ L HS V + FS DG I S S D T
Sbjct: 146 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVWGVAFSPDGQTIASASDDKT 203
Query: 331 ARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPP 390
++ ++G+LL+ GHSS V F+ DG + +AS D TVK+W+ ++ LQT
Sbjct: 204 VKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT---- 257
Query: 391 PPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACV 450
L G +SVN V P + I + ++ + GQ++++ +
Sbjct: 258 --LTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQLLQTLTG---HSSSVWGVAF 311
Query: 451 SPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 510
SP G+ I +D+ + ++ L+ L H V GV P +A+ +D T+KL
Sbjct: 312 SPDGQTIASASDDKTVKLWNRNGQHLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKL 370
Query: 511 WK 512
W
Sbjct: 371 WN 372
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 150/323 (46%), Gaps = 46/323 (14%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280
FSPDGQ + S S D +++ W+ +G+L +T H +V + FS D + +A
Sbjct: 147 FSPDGQTIASASDDKTVKL-WNR-NGQLL--------QTLTGHSSSVWGVAFSPDGQTIA 196
Query: 281 SGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK 340
S S D +K+W R+GQ L+ L HS V + FS DG I S S D T ++ ++G+
Sbjct: 197 SASDDKTVKLWN-RNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQ 253
Query: 341 LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQT------------FK 388
LL+ GHSS VN F DG + +AS D TVK+W+ ++ LQT F
Sbjct: 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS 312
Query: 389 PPPPLRGGDASVNSVHLFPKNPDHI-VVCNKTSSIYIMTLQ--GQVVKSFSSGK------ 439
P + +V L+ +N H+ + +SS++ + GQ + S S K
Sbjct: 313 PDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 372
Query: 440 REG----------GDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIG 489
R G SP G+ I +D+ + + +++G+L + H V G
Sbjct: 373 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVWG 431
Query: 490 VTHHPHRNLLATYGEDCTMKLWK 512
V P +A+ +D T+KLW
Sbjct: 432 VAFSPDDQTIASASDDKTVKLWN 454
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 149/303 (49%), Gaps = 28/303 (9%)
Query: 213 KSHAECAR---FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLC 269
++H+ R FSPDGQ + S S D ++ +W+ +G+L +T H +V
Sbjct: 13 EAHSSSVRGVAFSPDGQTIASASDDKTVK-LWNR-NGQLL--------QTLTGHSSSVWG 62
Query: 270 IEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS 329
+ FS D + +AS S D +K+W R+GQ L+ L HS V + FS DG I S S D
Sbjct: 63 VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDK 120
Query: 330 TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKP 389
T ++ ++G+LL+ GHSS V F+ DG + +AS D TVK+W+ ++ LQT
Sbjct: 121 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT--- 175
Query: 390 PPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAAC 449
L G +SV V P + I + ++ + GQ++++ +
Sbjct: 176 ---LTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTG---HSSSVRGVA 228
Query: 450 VSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMK 509
SP G+ I +D+ + + +++G+L + H V GV P +A+ +D T+K
Sbjct: 229 FSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVK 287
Query: 510 LWK 512
LW
Sbjct: 288 LWN 290
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 145/302 (48%), Gaps = 25/302 (8%)
Query: 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCI 270
G S F PDGQ + S S D +++ W+ +G+L +T H +V +
Sbjct: 260 GHSSSVNGVAFRPDGQTIASASDDKTVKL-WNR-NGQLL--------QTLTGHSSSVWGV 309
Query: 271 EFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDST 330
FS D + +AS S D +K+W R+GQ L+ L HS V + FS DG I S S D T
Sbjct: 310 AFSPDGQTIASASDDKTVKLWN-RNGQHLQTLT-GHSSSVWGVAFSPDGQTIASASDDKT 367
Query: 331 ARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPP 390
++ ++G+LL+ GHSS V F+ DG + +AS D TVK+W+ ++ LQT
Sbjct: 368 VKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT---- 421
Query: 391 PPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACV 450
L G +SV V P + I + ++ + GQ++++ +
Sbjct: 422 --LTGHSSSVWGVAFSPDDQT-IASASDDKTVKLWNRNGQLLQTLTG---HSSSVRGVAF 475
Query: 451 SPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKL 510
SP G+ I +D+ + + +++G+L + H V GV P +A+ +D T+KL
Sbjct: 476 SPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 534
Query: 511 WK 512
W
Sbjct: 535 WN 536
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 139/292 (47%), Gaps = 25/292 (8%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280
FSPDGQ + S S D +++ W+ L +T H +V + FS D + +A
Sbjct: 311 FSPDGQTIASASDDKTVKL-WNRNGQHL---------QTLTGHSSSVWGVAFSPDGQTIA 360
Query: 281 SGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK 340
S S D +K+W R+GQ L+ L HS V + FS DG I S S D T ++ ++G+
Sbjct: 361 SASDDKTVKLWN-RNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQ 417
Query: 341 LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASV 400
LL+ GHSS V F+ D + +AS D TVK+W+ ++ LQT L G +SV
Sbjct: 418 LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQT------LTGHSSSV 470
Query: 401 NSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCV 460
V P + I + ++ + GQ++++ + SP G+ I
Sbjct: 471 RGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTG---HSSSVRGVAFSPDGQTIASA 526
Query: 461 GEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512
+D+ + + +++G+L + H V GV P +A+ D T+KLW
Sbjct: 527 SDDKTVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 101/197 (51%), Gaps = 20/197 (10%)
Query: 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCI 270
G S FSPDGQ + S S D +++ W+ +G+L +T H +V +
Sbjct: 383 GHSSSVRGVAFSPDGQTIASASDDKTVKL-WNR-NGQLL--------QTLTGHSSSVWGV 432
Query: 271 EFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDST 330
FS D + +AS S D +K+W R+GQ L+ L HS V + FS DG I S S D T
Sbjct: 433 AFSPDDQTIASASDDKTVKLWN-RNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKT 490
Query: 331 ARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPP 390
++ ++G+LL+ GHSS V F+ DG + +AS D TVK+W+ ++ LQT
Sbjct: 491 VKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT---- 544
Query: 391 PPLRGGDASVNSVHLFP 407
L G +SV V P
Sbjct: 545 --LTGHSSSVWGVAFSP 559
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 14/213 (6%)
Query: 300 RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN 359
RLE AHS V + FS DG I S S D T ++ ++G+LL+ GHSS V F+
Sbjct: 10 NRLE-AHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 67
Query: 360 DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT 419
DG + +AS D TVK+W+ ++ LQT L G +SV V P + I +
Sbjct: 68 DGQTIASASDDKTVKLWN-RNGQLLQT------LTGHSSSVRGVAFSP-DGQTIASASDD 119
Query: 420 SSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHL 479
++ + GQ++++ + SP G+ I +D+ + + +++G+L
Sbjct: 120 KTVKLWNRNGQLLQTLTG---HSSSVWGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQT 175
Query: 480 MKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512
+ H V GV P +A+ +D T+KLW
Sbjct: 176 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 470 SHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512
SH K + ++ H V GV P +A+ +D T+KLW
Sbjct: 2 SHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN 44
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 92.0 bits (227), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 95/177 (53%), Gaps = 13/177 (7%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280
S +G F VS S+D + + W+ +G+ QY+ F+ H + VL + FS D+ +
Sbjct: 75 LSNNGNFAVSASWDHSLRL-WNLQNGQC----QYK----FLGHTKDVLSVAFSPDNRQIV 125
Query: 281 SGSQDGKIKVWRIRSGQCLRRLER-AHSEGVTSLVFSR--DGSQILSTSFDSTARIHGLK 337
SG +D ++VW ++ G+C+ L R AH++ V+ + FS D I+S +D+ ++ L
Sbjct: 126 SGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA 184
Query: 338 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLR 394
+G+L+ + +GH++YV + DGS ++ D ++WDL + L P+
Sbjct: 185 TGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPIN 241
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 26/223 (11%)
Query: 305 AHSEGVTSLVFSRD---GSQILSTSFDSTARIHGLKSGKLLKE---------FRGHSSYV 352
H VTSL + ++++STS D T G + E GHS++V
Sbjct: 11 GHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFV 70
Query: 353 NDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDH 412
+D +N+G+ V+AS D ++++W+L++ C F G V SV P N
Sbjct: 71 SDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKF------LGHTKDVLSVAFSPDN-RQ 123
Query: 413 IVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACV--SPK--GEWIYCVGEDRNLYC 468
IV + +++ + ++G+ + + S G D+V +CV SP I G D +
Sbjct: 124 IVSGGRDNALRVWNVKGECMHTLSRGAHT--DWV-SCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 469 FSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 511
+ +G+L +K H V VT P +L A+ +D +LW
Sbjct: 181 WDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 87/216 (40%), Gaps = 15/216 (6%)
Query: 257 DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFS 316
D H V + S + S S D +++W +++GQC + H++ V S+ FS
Sbjct: 60 DRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKF-LGHTKDVLSVAFS 118
Query: 317 RDGSQILSTSFDSTARIHGLKSGKLLKEFRG-HSSYVNDAIFTN--DGSRVVTASSDCTV 373
D QI+S D+ R+ +K + RG H+ +V+ F+ D +V+ D V
Sbjct: 119 PDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 374 KVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVK 433
KVWDL T + L+G V SV + P +C + + L
Sbjct: 179 KVWDLA------TGRLVTDLKGHTNYVTSVTVSPDGS----LCASSDKDGVARLWDLTKG 228
Query: 434 SFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCF 469
S G C SP W+ C ++ + F
Sbjct: 229 EALSEMAAGAPINQICFSPNRYWM-CAATEKGIRIF 263
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 13/123 (10%)
Query: 270 IEFSRDSEMLASGSQDGKIKVWRIRSGQCL-----RRLERAHSEGVTSLVFSRDGSQILS 324
+ SRD +L+ G + S +C RRLE HS V+ + S +G+ +S
Sbjct: 32 VSTSRDKTLLSWGPNPDR------HSSECSYGLPDRRLE-GHSAFVSDVALSNNGNFAVS 84
Query: 325 TSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCL 384
S+D + R+ L++G+ +F GH+ V F+ D ++V+ D ++VW++K +C+
Sbjct: 85 ASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG-ECM 143
Query: 385 QTF 387
T
Sbjct: 144 HTL 146
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 80/347 (23%), Positives = 142/347 (40%), Gaps = 43/347 (12%)
Query: 188 GTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGK 247
G K+D ++ P G +S F P +VS S D I+V WDY +G
Sbjct: 83 GPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKV-WDYETGD 141
Query: 248 LKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHS 307
++ L+ H ++V I F ++LAS S D IK+W + +C+R + H
Sbjct: 142 FERTLK--------GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH-GHD 192
Query: 308 EGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTA 367
V+S+ +G I+S S D T ++ +++G +K F GH +V DG+ + +
Sbjct: 193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 252
Query: 368 SSDCTVKVWDLKSTDCLQ------------TFKPPPPLRGGDASVNSVHLFPKNP----- 410
S+D TV+VW + + +C ++ P + S P
Sbjct: 253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL 312
Query: 411 -----DHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRN 465
I + + ++ + +MTL G GG F+ +C +D+
Sbjct: 313 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC-----------ADDKT 361
Query: 466 LYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512
L + +++ + + HE V + H + T D T+K+W+
Sbjct: 362 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 79/189 (41%), Gaps = 30/189 (15%)
Query: 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCI 270
G + R + DG + SCS D + V W + + K +L+ H V CI
Sbjct: 232 GHREWVRMVRPNQDGTLIASCSNDQTVRV-WVVATKECKAELR--------EHRHVVECI 282
Query: 271 EFSRDSE--------------------MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGV 310
++ +S L SGS+D IK+W + +G CL L H V
Sbjct: 283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-VGHDNWV 341
Query: 311 TSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSD 370
++F G ILS + D T R+ K+ + +K H +V F VVT S D
Sbjct: 342 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 401
Query: 371 CTVKVWDLK 379
TVKVW+ +
Sbjct: 402 QTVKVWECR 410
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 104/216 (48%), Gaps = 24/216 (11%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280
S DGQF +S S+DG + + WD +G + F+ H + VL + FS D+ +
Sbjct: 94 ISSDGQFALSGSWDGTLRL-WDLTTGTTTR--------RFVGHTKDVLSVAFSSDNRQIV 144
Query: 281 SGSQDGKIKVWRIRSGQCLRRLE-RAHSEGVTSLVFSRDGSQ--ILSTSFDSTARIHGLK 337
SGS+D IK+W G C ++ +HSE V+ + FS + S I+S +D ++ L
Sbjct: 145 SGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 203
Query: 338 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGD 397
+ KL GH+ Y+N + DGS + D +WDL L T L GGD
Sbjct: 204 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT------LDGGD 257
Query: 398 ASVNSVHLFPKNPDHIVVCNKTS-SIYIMTLQGQVV 432
++ +P+ +C T SI I L+G+++
Sbjct: 258 I----INALCFSPNRYWLCAATGPSIKIWDLEGKII 289
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 18/242 (7%)
Query: 277 EMLASGSQDGKIKVWRIRSGQC----LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTAR 332
+M+ S S+D I +W++ + +R R HS V+ +V S DG LS S+D T R
Sbjct: 52 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 111
Query: 333 IHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPP 392
+ L +G + F GH+ V F++D ++V+ S D T+K+W+ C T +
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQDESH 170
Query: 393 LRGGDASVNSVHLFPKNPDHIVV-CNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVS 451
V+ V P + + I+V C + + L +K+ G G VS
Sbjct: 171 ----SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVS 224
Query: 452 PKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI-GVTHHPHRNLL-ATYGEDCTMK 509
P G G+D + GK HL + D+I + P+R L A G ++K
Sbjct: 225 PDGSLCASGGKDGQAMLWDLNEGK--HLYTLDGGDIINALCFSPNRYWLCAATGP--SIK 280
Query: 510 LW 511
+W
Sbjct: 281 IW 282
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 104/216 (48%), Gaps = 24/216 (11%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280
S DGQF +S S+DG + + WD +G + F+ H + VL + FS D+ +
Sbjct: 71 ISSDGQFALSGSWDGTLRL-WDLTTGTTTR--------RFVGHTKDVLSVAFSSDNRQIV 121
Query: 281 SGSQDGKIKVWRIRSGQCLRRL-ERAHSEGVTSLVFSRDGSQ--ILSTSFDSTARIHGLK 337
SGS+D IK+W G C + + +HSE V+ + FS + S I+S +D ++ L
Sbjct: 122 SGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA 180
Query: 338 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGD 397
+ KL GH+ Y+N + DGS + D +WDL L T L GGD
Sbjct: 181 NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT------LDGGD 234
Query: 398 ASVNSVHLFPKNPDHIVVCNKTS-SIYIMTLQGQVV 432
++ +P+ +C T SI I L+G+++
Sbjct: 235 I----INALCFSPNRYWLCAATGPSIKIWDLEGKII 266
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 107/242 (44%), Gaps = 18/242 (7%)
Query: 277 EMLASGSQDGKIKVWRIRSGQC----LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTAR 332
+M+ S S+D I +W++ + +R R HS V+ +V S DG LS S+D T R
Sbjct: 29 DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLR 88
Query: 333 IHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPP 392
+ L +G + F GH+ V F++D ++V+ S D T+K+W+ C T +
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQD--- 144
Query: 393 LRGGDASVNSVHLFPKNPDHIVV-CNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVS 451
V+ V P + + I+V C + + L +K+ G G VS
Sbjct: 145 -ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVS 201
Query: 452 PKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI-GVTHHPHRNLL-ATYGEDCTMK 509
P G G+D + GK HL + D+I + P+R L A G ++K
Sbjct: 202 PDGSLCASGGKDGQAMLWDLNEGK--HLYTLDGGDIINALCFSPNRYWLCAATGP--SIK 257
Query: 510 LW 511
+W
Sbjct: 258 IW 259
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 139/321 (43%), Gaps = 29/321 (9%)
Query: 218 CARFSPDGQFLVS-CSFDGFIEVVWD-YLSGKLKKDLQYQADETFM------MHDETVLC 269
C +FS DG++L + C+ + V D L +L D D + D +
Sbjct: 69 CVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRS 128
Query: 270 IEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDS 329
+ FS D + LA+G++D I++W I + + + L+ H + + SL + G +++S S D
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 330 TARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKP 389
T RI L++G+ A+ DG + S D V+VWD ++ ++
Sbjct: 188 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247
Query: 390 PPPLRGGDASVNSVH--LFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREG----- 442
G +SV+ +F ++ +V + S+ + LQ KS S G
Sbjct: 248 EN--ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 305
Query: 443 ----GDFVAACVSPKG-EWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI------GVT 491
DFV + + + E+I +DR + + +SG +++ H VI G +
Sbjct: 306 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS 365
Query: 492 HHPHRNLLATYGEDCTMKLWK 512
P N+ AT DC ++WK
Sbjct: 366 LGPEYNVFATGSGDCKARIWK 386
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 21/174 (12%)
Query: 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS 283
DG+++ + S D + V WD +G L + L + +E+ H ++V + F+RD + + SGS
Sbjct: 218 DGKYIAAGSLDRAVRV-WDSETGFLVERLDSE-NESGTGHKDSVYSVVFTRDGQSVVSGS 275
Query: 284 QDGKIKVWRIR------------SGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 331
D +K+W ++ SG C H + V S+ +++ ILS S D
Sbjct: 276 LDRSVKLWNLQNANNKSDSKTPNSGTC-EVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 334
Query: 332 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSR------VVTASSDCTVKVWDLK 379
KSG L +GH + V N S T S DC ++W K
Sbjct: 335 LFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 119/261 (45%), Gaps = 26/261 (9%)
Query: 206 HTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDE 265
HT+ +G S C + +VS S D + V WD +G Q M H
Sbjct: 193 HTL-YGHTSTVRCMHLHE--KRVVSGSRDATLRV-WDIETG--------QCLHVLMGHVA 240
Query: 266 TVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST 325
V C+++ D + SG+ D +KVW + CL L+ H+ V SL F DG ++S
Sbjct: 241 AVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSG 295
Query: 326 SFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQ 385
S D++ R+ +++G + GH S + ++ +V+ ++D TVK+WD+K+ CLQ
Sbjct: 296 SLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQ 353
Query: 386 TFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGD 444
T + P + ++V N + ++ + ++ + L+ G+ +++ + + G
Sbjct: 354 TLQGP------NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSG 407
Query: 445 FVAACVSPKGEWIYCVGEDRN 465
V + + C RN
Sbjct: 408 GVVWRIRASNTKLVCAVGSRN 428
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 134/296 (45%), Gaps = 34/296 (11%)
Query: 218 CARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE 277
C +F G +VS S D ++V W ++GK + T + H V + RD+
Sbjct: 124 CLQFC--GNRIVSGSDDNTLKV-WSAVTGKCLR--------TLVGHTGGVWSSQM-RDN- 170
Query: 278 MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK 337
++ SGS D +KVW +G+C+ L H+ V + +++S S D+T R+ ++
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIE 227
Query: 338 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGD 397
+G+ L GH + V + DG RVV+ + D VKVWD ++ CL T +
Sbjct: 228 TGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ--------- 276
Query: 398 ASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVSPKGEW 456
N V+ + H+V + +SI + ++ G + + + G + + + K
Sbjct: 277 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT-----GHQSLTSGMELKDNI 331
Query: 457 IYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVT-HHPHRNLLATYGEDCTMKLW 511
+ D + + ++G+ ++ K VT ++N + T +D T+KLW
Sbjct: 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 25/190 (13%)
Query: 327 FDSTARIHGLKSGKLLKEFRGHSSYVNDAI-FTNDGSRVVTASSDCTVKVWDLKSTDCLQ 385
D+ R LKS K+LK GH +V + F G+R+V+ S D T+KVW + CL+
Sbjct: 99 IDTNWRRGELKSPKVLK---GHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLR 153
Query: 386 TFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS-SIYIMTLQ-GQVVKSFSSGKREGG 443
T L G V S + D+I++ T ++ + + G+ + + G
Sbjct: 154 T------LVGHTGGVWSSQM----RDNIIISGSTDRTLKVWNAETGECIHTLY-----GH 198
Query: 444 DFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYG 503
C+ + + D L + ++G+ H++ H V V + R + Y
Sbjct: 199 TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY- 257
Query: 504 EDCTMKLWKP 513
D +K+W P
Sbjct: 258 -DFMVKVWDP 266
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 100/219 (45%), Gaps = 28/219 (12%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280
S DGQF +S S+DG + +WD +G + F+ H + VL + FS D+ +
Sbjct: 438 LSSDGQFALSGSWDGELR-LWDLAAG--------VSTRRFVGHTKDVLSVAFSLDNRQIV 488
Query: 281 SGSQDGKIKVWRIRSGQCLRRLE---RAHSEGVTSLVFSRDGSQ--ILSTSFDSTARIHG 335
S S+D IK+W G+C + H + V+ + FS + Q I+S S+D T ++
Sbjct: 489 SASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 336 LKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRG 395
L + KL GH+ YV+ + DGS + D V +WDL L + +
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE------- 600
Query: 396 GDASVNSV-HLFPKNPDHIVVCNKTS-SIYIMTLQGQVV 432
NSV H +P+ +C T I I L+ + +
Sbjct: 601 ----ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSI 635
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 112/264 (42%), Gaps = 23/264 (8%)
Query: 259 TFMMHDETVLCIEFSRD-SEMLASGSQDGKIKVWRIRS-----GQCLRRLERAHSEGVTS 312
T H + V I D ++++ S S+D I +W++ G RRL HS V
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVED 435
Query: 313 LVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCT 372
+V S DG LS S+D R+ L +G + F GH+ V F+ D ++V+AS D T
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 373 VKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD----HIVVCNKTSSIYIMTLQ 428
+K+W+ +C T GG+ + V +P+ IV + ++ + L
Sbjct: 496 IKLWNTLG-ECKYTIS-----EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 429 GQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI 488
++S +G G VSP G G+D + + GK L + VI
Sbjct: 550 NCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK--KLYSLEANSVI 605
Query: 489 -GVTHHPHRNLLATYGEDCTMKLW 511
+ P+R L E +K+W
Sbjct: 606 HALCFSPNRYWLCAATEHG-IKIW 628
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 90/197 (45%), Gaps = 36/197 (18%)
Query: 206 HTIKFGTKSHAE---CARFSPDG--QFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETF 260
+TI G + H + C RFSP+ +VS S+D ++V W+ + KL+ T
Sbjct: 507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV-WNLSNCKLR--------STL 557
Query: 261 MMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGS 320
H V + S D + ASG +DG + +W + G+ L LE A+S + +L FS +
Sbjct: 558 AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSV-IHALCFSPN-R 614
Query: 321 QILSTSFDSTARIHGLKSGKLLKEFR-------------GHSS------YVNDAIFTNDG 361
L + + +I L+S ++++ + G ++ Y ++ DG
Sbjct: 615 YWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG 674
Query: 362 SRVVTASSDCTVKVWDL 378
S + + +D ++VW +
Sbjct: 675 STLFSGYTDGVIRVWGI 691
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 20/183 (10%)
Query: 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFM-MHDETVLC 269
G K +F+ DG+ L+S S D I+V W++ +G D F+ H ETV
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQV-WNWQTG----------DYVFLQAHQETVKD 1049
Query: 270 IEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLER---AHSEGVTSLVFSRDGSQILSTS 326
+DS +L S S DG +KVW + +G R+ER H V S S D ++ STS
Sbjct: 1050 FRLLQDSRLL-SWSFDGTVKVWNVITG----RIERDFTCHQGTVLSCAISSDATKFSSTS 1104
Query: 327 FDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQT 386
D TA+I L E +GH+ V + F+ DG + T + +++W++ L +
Sbjct: 1105 ADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164
Query: 387 FKP 389
P
Sbjct: 1165 CAP 1167
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 12/166 (7%)
Query: 219 ARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEM 278
A FS DGQ + SC D ++V + + +K L +A H++ VLC FS D
Sbjct: 621 ACFSQDGQRIASCGADKTLQV---FKAETGEKLLDIKA------HEDEVLCCAFSSDDSY 671
Query: 279 LASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQIL--STSFDSTARIHGL 336
+A+ S D K+K+W +G+ + + HSE V F+ + +L + S D ++ L
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 730
Query: 337 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 382
+ GH++ VN F+ D + + S+D T+++WD++S +
Sbjct: 731 NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 120/283 (42%), Gaps = 21/283 (7%)
Query: 243 YLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL 302
YL KK ++ + H + V FS+D + +AS D ++V++ +G+ L +
Sbjct: 594 YLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI 653
Query: 303 ERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 362
+AH + V FS D S I + S D +I +GKL+ + HS VN FTN +
Sbjct: 654 -KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 363 RVV--TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS 420
++ T S+D +K+WDL +C T + G SVN P + + + C+
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNT------MFGHTNSVNHCRFSPDD-ELLASCSADG 765
Query: 421 SIYIMTLQGQVVKSFSSGKR---------EGGDFVAACV--SPKGEWIYCVGEDRNLYCF 469
++ + ++ + + KR E + + C S G+ I +++ L
Sbjct: 766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD 825
Query: 470 SHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512
H SG L + H + P+ +L ++LW
Sbjct: 826 IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 868
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 130/315 (41%), Gaps = 35/315 (11%)
Query: 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDE---- 265
FG + RFSPD + L SCS DG + + WD S +K + + F + E
Sbjct: 740 FGHTNSVNHCRFSPDDELLASCSADGTLRL-WDVRSANERKSINVK---RFFLSSEDPPE 795
Query: 266 ----TVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFS-RDGS 320
V C +S D + + +++ K+ ++ I + L + H + FS D
Sbjct: 796 DVEVIVKCCSWSADGDKIIVAAKN-KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHL 854
Query: 321 QILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS 380
+++ S + + S + + RGH S+V+ +F+ DGS +TAS D T++VW+ K
Sbjct: 855 AVIALS-QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913
Query: 381 TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKR 440
NS + + D + N+T + + ++G + + +G+
Sbjct: 914 V-----------------CKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 956
Query: 441 E---GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRN 497
+ C+SP E++ ED + + ++ H+K V +
Sbjct: 957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1016
Query: 498 LLATYGEDCTMKLWK 512
L + ED +++W
Sbjct: 1017 TLISSSEDSVIQVWN 1031
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 23/166 (13%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKD----LQYQADETFMMHDETVLCIEFSRDS 276
FSPDG ++ S D I V W+ + K+ K+ L+ + D F ++ VL ++ R
Sbjct: 890 FSPDGSSFLTASDDQTIRV-WE--TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 946
Query: 277 EMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL 336
+++A ++GQ + L A V+ S + D +I L
Sbjct: 947 QLIAG------------KTGQ-IDYLPEAQ---VSCCCLSPHLEYVAFGDEDGAIKIIEL 990
Query: 337 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 382
+ ++ GH V FT DG ++++S D ++VW+ ++ D
Sbjct: 991 PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 419 TSSIYIMTLQGQVVKSFSS-GKREGGDFVA-ACVSPKGEWIYCVGEDRNLYCFSHQSGKL 476
T +Y+ + + +K+ S R D V AC S G+ I G D+ L F ++G+
Sbjct: 590 TGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK 649
Query: 477 EHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 511
+K HE +V+ + +AT D +K+W
Sbjct: 650 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 684
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 20/183 (10%)
Query: 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFM-MHDETVLC 269
G K +F+ DG+ L+S S D I+V W++ +G D F+ H ETV
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQV-WNWQTG----------DYVFLQAHQETVKD 1056
Query: 270 IEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLER---AHSEGVTSLVFSRDGSQILSTS 326
+DS +L S S DG +KVW + +G R+ER H V S S D ++ STS
Sbjct: 1057 FRLLQDSRLL-SWSFDGTVKVWNVITG----RIERDFTCHQGTVLSCAISSDATKFSSTS 1111
Query: 327 FDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQT 386
D TA+I L E +GH+ V + F+ DG + T + +++W++ L +
Sbjct: 1112 ADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1171
Query: 387 FKP 389
P
Sbjct: 1172 CAP 1174
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 12/166 (7%)
Query: 219 ARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEM 278
A FS DGQ + SC D ++V + + +K L +A H++ VLC FS D
Sbjct: 628 ACFSQDGQRIASCGADKTLQV---FKAETGEKLLDIKA------HEDEVLCCAFSSDDSY 678
Query: 279 LASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQIL--STSFDSTARIHGL 336
+A+ S D K+K+W +G+ + + HSE V F+ + +L + S D ++ L
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 737
Query: 337 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 382
+ GH++ VN F+ D + + S+D T+++WD++S +
Sbjct: 738 NQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 783
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 120/283 (42%), Gaps = 21/283 (7%)
Query: 243 YLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL 302
YL KK ++ + H + V FS+D + +AS D ++V++ +G+ L +
Sbjct: 601 YLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI 660
Query: 303 ERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 362
+AH + V FS D S I + S D +I +GKL+ + HS VN FTN +
Sbjct: 661 -KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 363 RVV--TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTS 420
++ T S+D +K+WDL +C T + G SVN P + + + C+
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNT------MFGHTNSVNHCRFSPDD-ELLASCSADG 772
Query: 421 SIYIMTLQGQVVKSFSSGKR---------EGGDFVAACV--SPKGEWIYCVGEDRNLYCF 469
++ + ++ + + KR E + + C S G+ I +++ L
Sbjct: 773 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFD 832
Query: 470 SHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512
H SG L + H + P+ +L ++LW
Sbjct: 833 IHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 875
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 130/315 (41%), Gaps = 35/315 (11%)
Query: 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDE---- 265
FG + RFSPD + L SCS DG + + WD S +K + + F + E
Sbjct: 747 FGHTNSVNHCRFSPDDELLASCSADGTLRL-WDVRSANERKSINVK---RFFLSSEDPPE 802
Query: 266 ----TVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFS-RDGS 320
V C +S D + + +++ K+ ++ I + L + H + FS D
Sbjct: 803 DVEVIVKCCSWSADGDKIIVAAKN-KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHL 861
Query: 321 QILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS 380
+++ S + + S + + RGH S+V+ +F+ DGS +TAS D T++VW+ K
Sbjct: 862 AVIALS-QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 920
Query: 381 TDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKR 440
NS + + D + N+T + + ++G + + +G+
Sbjct: 921 V-----------------CKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 963
Query: 441 E---GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRN 497
+ C+SP E++ ED + + ++ H+K V +
Sbjct: 964 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGK 1023
Query: 498 LLATYGEDCTMKLWK 512
L + ED +++W
Sbjct: 1024 TLISSSEDSVIQVWN 1038
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 23/166 (13%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKD----LQYQADETFMMHDETVLCIEFSRDS 276
FSPDG ++ S D I V W+ + K+ K+ L+ + D F ++ VL ++ R
Sbjct: 897 FSPDGSSFLTASDDQTIRV-WE--TKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 953
Query: 277 EMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL 336
+++A ++GQ + L A V+ S + D +I L
Sbjct: 954 QLIAG------------KTGQ-IDYLPEAQ---VSCCCLSPHLEYVAFGDEDGAIKIIEL 997
Query: 337 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 382
+ ++ GH V FT DG ++++S D ++VW+ ++ D
Sbjct: 998 PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1043
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 419 TSSIYIMTLQGQVVKSFSS-GKREGGDFVA-ACVSPKGEWIYCVGEDRNLYCFSHQSGKL 476
T +Y+ + + +K+ S R D V AC S G+ I G D+ L F ++G+
Sbjct: 597 TGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK 656
Query: 477 EHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLW 511
+K HE +V+ + +AT D +K+W
Sbjct: 657 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIW 691
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 114/260 (43%), Gaps = 25/260 (9%)
Query: 208 IKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETV 267
I + T++ C SP Q++ +G IE++ +L + +Q+ H +TV
Sbjct: 962 IDYLTEAQVSCCCLSPHLQYIAFGDENGAIEIL------ELVNNRIFQSR---FQHKKTV 1012
Query: 268 LCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF 327
I+F+ D + L S S D +I+VW + +C+ R H E V ++ S++LS SF
Sbjct: 1013 WHIQFTADEKTLISSSDDAEIQVWNWQLDKCI--FLRGHQETVKDFRLLKN-SRLLSWSF 1069
Query: 328 DSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTF 387
D T ++ + +G K+F H V ++D ++ + S+D T K+W S D L
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIW---SFDLLL-- 1124
Query: 388 KPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTL-QGQVVK-----SFSSGKRE 441
P LRG + V F + + + I I + G+++ S
Sbjct: 1125 -PLHELRGHNGCVR-CSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATH 1182
Query: 442 GGDFVAACVSPKGEWIYCVG 461
GG C SP G+ + G
Sbjct: 1183 GGWVTDLCFSPDGKMLISAG 1202
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 12/166 (7%)
Query: 219 ARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEM 278
A FS DGQ + SC D ++V + + +K L+ +A H++ VLC FS D
Sbjct: 627 ACFSEDGQRIASCGADKTLQV---FKAETGEKLLEIKA------HEDEVLCCAFSTDDRF 677
Query: 279 LASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQIL--STSFDSTARIHGL 336
+A+ S D K+K+W +G+ + + HSE V F+ +L + S D ++ L
Sbjct: 678 IATCSVDKKVKIWNSMTGELVHTYDE-HSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL 736
Query: 337 KSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD 382
+ GH++ VN F+ D + + S+D T+K+WD S +
Sbjct: 737 NQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 9/169 (5%)
Query: 243 YLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL 302
YL KK++ + H + V FS D + +AS D ++V++ +G+ L +
Sbjct: 600 YLEWINKKNITNLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI 659
Query: 303 ERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGS 362
+AH + V FS D I + S D +I +G+L+ + HS VN FTN
Sbjct: 660 -KAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSH 718
Query: 363 RVV--TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKN 409
++ T SSDC +K+WDL +C T + G SVN P +
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECRNT------MFGHTNSVNHCRFSPDD 761
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 13/178 (7%)
Query: 210 FGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDE---- 265
FG + RFSPD + L SCS DG +++ WD S +K + + F ++ E
Sbjct: 746 FGHTNSVNHCRFSPDDKLLASCSADGTLKL-WDATSANERKSINVKQ---FFLNLEDPQE 801
Query: 266 ----TVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQ 321
V C +S D + +++ KI ++ I + L + H + FS
Sbjct: 802 DMEVIVKCCSWSADGARIMVAAKN-KIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHL 860
Query: 322 ILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLK 379
+ + S + + RGH S+V+ +F+ DGS +T+S D T+++W+ K
Sbjct: 861 AVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETK 918
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 300 RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN 359
R + R H++ V FS DG +I S D T ++ ++G+ L E + H V F+
Sbjct: 614 RLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFST 673
Query: 360 DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKT 419
D + T S D VK+W+ + + + T+ VN H F + H+++ +
Sbjct: 674 DDRFIATCSVDKKVKIWNSMTGELVHTYDEHSE------QVNCCH-FTNSSHHLLLATGS 726
Query: 420 SSIYI 424
S ++
Sbjct: 727 SDCFL 731
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 79/211 (37%), Gaps = 49/211 (23%)
Query: 218 CARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKK--------------------------- 250
C FS D +F+ +CS D +++ W+ ++G+L
Sbjct: 668 CCAFSTDDRFIATCSVDKKVKI-WNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGS 726
Query: 251 --------DL-QYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVW---------R 292
DL Q + T H +V FS D ++LAS S DG +K+W
Sbjct: 727 SDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKS 786
Query: 293 IRSGQCLRRLERAHSEG---VTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHS 349
I Q LE + V +S DG++I+ + + SG L + GH
Sbjct: 787 INVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHH 846
Query: 350 SYVNDAIFTNDGSRVVTASSDCTVKVWDLKS 380
S + F+ V A S V++W+ S
Sbjct: 847 STIQYCDFSPQNHLAVVALSQYCVELWNTDS 877
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 53/168 (31%)
Query: 346 RGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHL 405
R H+ V A F+ DG R+ + +D T++V+ ++ + L K
Sbjct: 618 RPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKA---------------- 661
Query: 406 FPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRN 465
+ D ++ C +FS+ R F+A C D+
Sbjct: 662 ---HEDEVLCC-----------------AFSTDDR----FIATC-----------SVDKK 686
Query: 466 LYCFSHQSGKLEHLMKVHEKDV--IGVTHHPHRNLLATYGEDCTMKLW 511
+ ++ +G+L H H + V T+ H LLAT DC +KLW
Sbjct: 687 VKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 734
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 448 ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCT 507
AC S G+ I G D+ L F ++G+ +K HE +V+ +AT D
Sbjct: 627 ACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKK 686
Query: 508 MKLWK 512
+K+W
Sbjct: 687 VKIWN 691
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 91/172 (52%), Gaps = 10/172 (5%)
Query: 216 AECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRD 275
A FSPD Q+L + + G + + SGK + L + + +L I +S D
Sbjct: 125 AWTLAFSPDSQYLATGTHVGKVNIF-GVESGKKEYSLDTRG--------KFILSIAYSPD 175
Query: 276 SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHG 335
+ LASG+ DG I ++ I +G+ L LE H+ + SL FS D +++ S D +I+
Sbjct: 176 GKYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 234
Query: 336 LKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTF 387
++ L GH+S+V + F D + V++SSD +VKVWD+ + C+ TF
Sbjct: 235 VQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 10/158 (6%)
Query: 230 SCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIK 289
S S D I + WD +GK K + + + + FS DS+ LA+G+ GK+
Sbjct: 97 SSSLDAHIRL-WDLENGKQIKSIDAGPVDAWTL--------AFSPDSQYLATGTHVGKVN 147
Query: 290 VWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHS 349
++ + SG+ L+ + + S+ +S DG + S + D I + +GKLL GH+
Sbjct: 148 IFGVESGKKEYSLD-TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHA 206
Query: 350 SYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTF 387
+ F+ D +VTAS D +K++D++ + T
Sbjct: 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL 244
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 10/157 (6%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280
+SPDG++L S + DG I + D +GKL L+ H + + FS DS++L
Sbjct: 172 YSPDGKYLASGAIDGIINIF-DIATGKLLHTLE--------GHAMPIRSLTFSPDSQLLV 222
Query: 281 SGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK 340
+ S DG IK++ ++ L H+ V ++ F D + +S+S D + ++ + +
Sbjct: 223 TASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281
Query: 341 LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
+ F H V + +GS++V+ D + ++D
Sbjct: 282 CVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 93/260 (35%), Gaps = 68/260 (26%)
Query: 263 HDETVLCIEFS----RDSEMLASGSQDGKIKVWRIRSGQC-LRRLERAHSEGVTSLVFSR 317
HD+ + + + +SE + +GS D +KVW+ R + L+ H GV S+ S
Sbjct: 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH 90
Query: 318 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
S+S D+ R+ L++GK +K DA V W
Sbjct: 91 TLPIAASSSLDAHIRLWDLENGKQIKSI--------DA---------------GPVDAWT 127
Query: 378 LKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSS 437
L F P V V++F S
Sbjct: 128 L-------AFSPDSQYLATGTHVGKVNIF---------------------------GVES 153
Query: 438 GKRE------GGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVT 491
GK+E G ++ SP G+++ D + F +GKL H ++ H + +T
Sbjct: 154 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 213
Query: 492 HHPHRNLLATYGEDCTMKLW 511
P LL T +D +K++
Sbjct: 214 FSPDSQLLVTASDDGYIKIY 233
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 35/230 (15%)
Query: 209 KFGT-----KSHAECAR---FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETF 260
KFG K H+ + + DG + +S S+D + + WD +G+ YQ F
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL-WDVATGE-----TYQ---RF 103
Query: 261 MMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF----- 315
+ H V+ ++ + + M+ SGS+D IKVW I+ GQCL L H++ V+ +
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL-LGHNDWVSQVRVVPNEK 161
Query: 316 -SRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVK 374
D I+S D + L ++ +F GH+S +N + DG+ + +A D +
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 375 VWDLKSTDCLQTFKP----------PPPLRGGDASVNSVHLFPKNPDHIV 414
+W+L + + T P A+ + +F +P ++V
Sbjct: 222 LWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 27/237 (11%)
Query: 277 EMLASGSQDGKIKVWRI-----RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 331
+L S S+D + W++ + G +R + HS V + DG+ LS S+D T
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 332 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 391
R+ + +G+ + F GH S V S +++ S D T+KVW +K CL T
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLAT----- 143
Query: 392 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE-GGDFVA--- 447
L G + V+ V + P + S I ++VK+++ + + DF+
Sbjct: 144 -LLGHNDWVSQVRVVPNEK-----ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 448 ----ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLA 500
SP G I G+D + ++ + K + + + +V + P+R LA
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLA 253
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 18/225 (8%)
Query: 298 CLRRLERAHSEGVTSLVFSRDGSQIL-STSFDSTARIHGL-----KSGKLLKEFRGHSSY 351
LR H+ VTSL S +L S S D T L K G ++ F+GHS
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 352 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD 411
V D T DG+ ++AS D T+++WD+ + + Q F G + V SV + K
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVDI-DKKAS 120
Query: 412 HIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGE----WIYCVGEDRNLY 467
I+ ++ +I + T++GQ + + G + V + K + I G D+ +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 468 CFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512
++ ++E H ++ +T P L+A+ G+D + LW
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 253 QYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTS 312
Q+Q + F+ H+ + + S D ++AS +DG+I +W + + + + L A E V S
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS-AQDE-VFS 242
Query: 313 LVFSRDGSQILSTSFDSTARIHGLKSGKLLK----EFRGHSS----YVNDAIFTNDGSRV 364
L FS + L+ + + ++ L L+ EF G+S + ++ DG +
Sbjct: 243 LAFSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301
Query: 365 VTASSDCTVKVWDLKSTD 382
+D ++VW + + +
Sbjct: 302 FAGYTDNVIRVWQVMTAN 319
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 35/230 (15%)
Query: 209 KFGT-----KSHAECAR---FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETF 260
KFG K H+ + + DG + +S S+D + + WD +G+ YQ F
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL-WDVATGE-----TYQ---RF 103
Query: 261 MMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF----- 315
+ H V+ ++ + + M+ SGS+D IKVW I+ GQCL L H++ V+ +
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL-LGHNDWVSQVRVVPNEK 161
Query: 316 -SRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVK 374
D I+S D + L ++ +F GH+S +N + DG+ + +A D +
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 375 VWDLKSTDCLQTFKP----------PPPLRGGDASVNSVHLFPKNPDHIV 414
+W+L + + T P A+ + +F +P ++V
Sbjct: 222 LWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 27/237 (11%)
Query: 277 EMLASGSQDGKIKVWRI-----RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 331
+L S S+D + W++ + G +R + HS V + DG+ LS S+D T
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 332 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 391
R+ + +G+ + F GH S V S +++ S D T+KVW +K CL T
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLAT----- 143
Query: 392 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE-GGDFVA--- 447
L G + V+ V + P + S I ++VK+++ + + DF+
Sbjct: 144 -LLGHNDWVSQVRVVPNEK-----ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 448 ----ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLA 500
SP G I G+D + ++ + K + + + +V + P+R LA
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLA 253
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 18/225 (8%)
Query: 298 CLRRLERAHSEGVTSLVFSRDGSQIL-STSFDSTARIHGL-----KSGKLLKEFRGHSSY 351
LR H+ VTSL S +L S S D T L K G ++ F+GHS
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 352 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD 411
V D T DG+ ++AS D T+++WD+ + + Q F G + V SV + K
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVDI-DKKAS 120
Query: 412 HIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGE----WIYCVGEDRNLY 467
I+ ++ +I + T++GQ + + G + V + K + I G D+ +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 468 CFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512
++ ++E H ++ +T P L+A+ G+D + LW
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 11/132 (8%)
Query: 253 QYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTS 312
Q+Q + F+ H+ + + S D ++AS +DG+I +W + + + + L A E V S
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS-AQDE-VFS 242
Query: 313 LVFSRDGSQILSTSFDSTARIHGLKSGKLLK----EFRGHSS----YVNDAIFTNDGSRV 364
L FS + L+ + + ++ L L+ EF G+S + ++ DG +
Sbjct: 243 LAFSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301
Query: 365 VTASSDCTVKVW 376
+D ++VW
Sbjct: 302 FAGYTDNVIRVW 313
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 35/230 (15%)
Query: 209 KFGT-----KSHAECAR---FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETF 260
KFG K H+ + + DG + +S S+D + + WD +G+ YQ F
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL-WDVATGE-----TYQ---RF 103
Query: 261 MMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF----- 315
+ H V+ ++ + + M+ SGS+D IKVW I+ GQCL L H++ V+ +
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL-LGHNDWVSQVRVVPNEK 161
Query: 316 -SRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVK 374
D I+S D + L ++ +F GH+S +N + DG+ + +A D +
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 375 VWDLKSTDCLQTFKP----------PPPLRGGDASVNSVHLFPKNPDHIV 414
+W+L + + T P A+ + +F +P ++V
Sbjct: 222 LWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 27/237 (11%)
Query: 277 EMLASGSQDGKIKVWRI-----RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 331
+L S S+D + W++ + G +R + HS V + DG+ LS S+D T
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 332 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 391
R+ + +G+ + F GH S V S +++ S D T+KVW +K CL T
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLAT----- 143
Query: 392 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE-GGDFVA--- 447
L G + V+ V + P + S I ++VK+++ + + DF+
Sbjct: 144 -LLGHNDWVSQVRVVPNEK-----ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 448 ----ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLA 500
SP G I G+D + ++ + K + + + +V + P+R LA
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLA 253
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 18/225 (8%)
Query: 298 CLRRLERAHSEGVTSLVFSRDGSQIL-STSFDSTARIHGL-----KSGKLLKEFRGHSSY 351
LR H+ VTSL S +L S S D T L K G ++ F+GHS
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 352 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD 411
V D T DG+ ++AS D T+++WD+ + + Q F G + V SV + K
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVDI-DKKAS 120
Query: 412 HIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGE----WIYCVGEDRNLY 467
I+ ++ +I + T++GQ + + G + V + K + I G D+ +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 468 CFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512
++ ++E H ++ +T P L+A+ G+D + LW
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 253 QYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTS 312
Q+Q + F+ H+ + + S D ++AS +DG+I +W + + + + L A E V S
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS-AQDE-VFS 242
Query: 313 LVFSRDGSQILSTSFDSTARIHGLKSGKLLK----EFRGHSS----YVNDAIFTNDGSRV 364
L FS + L+ + + ++ L L+ EF G+S+ + ++ DG +
Sbjct: 243 LAFSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTL 301
Query: 365 VTASSDCTVKVWDLKSTD 382
+D ++VW + + +
Sbjct: 302 FAGYTDNVIRVWQVMTAN 319
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 35/230 (15%)
Query: 209 KFGT-----KSHAECAR---FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETF 260
KFG K H+ + + DG + +S S+D + + WD +G+ YQ F
Sbjct: 47 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL-WDVATGE-----TYQ---RF 97
Query: 261 MMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF----- 315
+ H V+ ++ + + M+ SGS+D IKVW I+ GQCL L H++ V+ +
Sbjct: 98 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL-LGHNDWVSQVRVVPNEK 155
Query: 316 -SRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVK 374
D I+S D + L ++ +F GH+S +N + DG+ + +A D +
Sbjct: 156 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 215
Query: 375 VWDLKSTDCLQTFKP----------PPPLRGGDASVNSVHLFPKNPDHIV 414
+W+L + + T P A+ + +F +P ++V
Sbjct: 216 LWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 265
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 27/237 (11%)
Query: 277 EMLASGSQDGKIKVWRI-----RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 331
+L S S+D + W++ + G +R + HS V + DG+ LS S+D T
Sbjct: 25 NLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTADGAYALSASWDKTL 83
Query: 332 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 391
R+ + +G+ + F GH S V S +++ S D T+KVW +K CL T
Sbjct: 84 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLAT----- 137
Query: 392 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE-GGDFVA--- 447
L G + V+ V + P + S I ++VK+++ + + DF+
Sbjct: 138 -LLGHNDWVSQVRVVPNEK-----ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 191
Query: 448 ----ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLA 500
SP G I G+D + ++ + K + + + +V + P+R LA
Sbjct: 192 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLA 247
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 18/225 (8%)
Query: 298 CLRRLERAHSEGVTSLVFSRDGSQIL-STSFDSTARIHGL-----KSGKLLKEFRGHSSY 351
LR H+ VTSL S +L S S D T L K G ++ F+GHS
Sbjct: 2 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 61
Query: 352 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD 411
V D T DG+ ++AS D T+++WD+ + + Q F G + V SV + K
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVDI-DKKAS 114
Query: 412 HIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGE----WIYCVGEDRNLY 467
I+ ++ +I + T++GQ + + G + V + K + I G D+ +
Sbjct: 115 MIISGSRDKTIKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 173
Query: 468 CFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512
++ ++E H ++ +T P L+A+ G+D + LW
Sbjct: 174 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 253 QYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTS 312
Q+Q + F+ H+ + + S D ++AS +DG+I +W + + + + L A E V S
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS-AQDE-VFS 236
Query: 313 LVFSRDGSQILSTSFDSTARIHGLKSGKLLK----EFRGHSS----YVNDAIFTNDGSRV 364
L FS + L+ + + ++ L L+ EF G+S + ++ DG +
Sbjct: 237 LAFSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 295
Query: 365 VTASSDCTVKVWDLKSTD 382
+D ++VW + + +
Sbjct: 296 FAGYTDNVIRVWQVMTAN 313
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 35/230 (15%)
Query: 209 KFGT-----KSHAECAR---FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETF 260
KFG K H+ + + DG + +S S+D + + WD +G+ YQ F
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL-WDVATGE-----TYQ---RF 103
Query: 261 MMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF----- 315
+ H V+ ++ + + M+ SGS+D IKVW I+ GQCL L H++ V+ +
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL-LGHNDWVSQVRVVPNEK 161
Query: 316 -SRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVK 374
D I+S D + L ++ +F GH+S +N + DG+ + +A D +
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 375 VWDLKSTDCLQTFKP----------PPPLRGGDASVNSVHLFPKNPDHIV 414
+W+L + + T P A+ + +F +P ++V
Sbjct: 222 LWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 18/225 (8%)
Query: 298 CLRRLERAHSEGVTSLVFSRDGSQIL-STSFDSTARIHGL-----KSGKLLKEFRGHSSY 351
LR H+ VTSL S +L S S D T L K G ++ F+GHS
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 352 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD 411
V D T DG+ ++AS D T+++WD+ + + Q F G + V SV + K
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVMSVDI-DKKAS 120
Query: 412 HIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGE----WIYCVGEDRNLY 467
I+ ++ +I + T++GQ + + G + V + K + I G D+ +
Sbjct: 121 MIISGSRDKTIKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 468 CFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512
++ ++E H ++ +T P L+A+ G+D + LW
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 27/237 (11%)
Query: 277 EMLASGSQDGKIKVWRI-----RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 331
+L S S+D + W++ + G +R + HS V + DG+ LS S+D T
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 332 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 391
R+ + +G+ + F GH S V S +++ S D T+KVW +K CL T
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLAT----- 143
Query: 392 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE-GGDFVA--- 447
L G + V+ V + P + S I ++VK+++ + + DF+
Sbjct: 144 -LLGHNDWVSQVRVVPNEK-----ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS 197
Query: 448 ----ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLA 500
SP G I G+D + ++ + K + + + +V + P+R LA
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVFSLAFSPNRYWLA 253
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 253 QYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTS 312
Q+Q + F+ H+ + + S D ++AS +DG+I +W + + + + L A E V S
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS-AQDE-VFS 242
Query: 313 LVFSRDGSQILSTSFDSTARIHGLKSGKLLK----EFRGHSS----YVNDAIFTNDGSRV 364
L FS + L+ + + ++ L L+ EF G+S + ++ DG +
Sbjct: 243 LAFSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301
Query: 365 VTASSDCTVKVWDLKSTD 382
+D ++VW + + +
Sbjct: 302 FAGYTDNVIRVWQVMTAN 319
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 99/230 (43%), Gaps = 35/230 (15%)
Query: 209 KFGT-----KSHAECAR---FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETF 260
KFG K H+ + + DG + +S S+D + + WD +G+ YQ F
Sbjct: 53 KFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL-WDVATGE-----TYQ---RF 103
Query: 261 MMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF----- 315
+ H V ++ + + + SGS+D IKVW I+ GQCL L H++ V+ +
Sbjct: 104 VGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATL-LGHNDWVSQVRVVPNEK 161
Query: 316 -SRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVK 374
D I+S D + L ++ +F GH+S +N + DG+ + +A D +
Sbjct: 162 ADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIX 221
Query: 375 VWDLKSTDCLQTFKP----------PPPLRGGDASVNSVHLFPKNPDHIV 414
+W+L + T P A+ + +F +P ++V
Sbjct: 222 LWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLV 271
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 18/225 (8%)
Query: 298 CLRRLERAHSEGVTSLVFSRDGSQIL-STSFDSTARIHGL-----KSGKLLKEFRGHSSY 351
LR H+ VTSL S +L S S D T L K G ++ F+GHS
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 352 VNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPD 411
V D T DG+ ++AS D T+++WD+ + + Q F G + V SV + K
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRF------VGHKSDVXSVDI-DKKAS 120
Query: 412 HIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGE----WIYCVGEDRNLY 467
I+ ++ +I + T++GQ + + G + V + K + I G D+ +
Sbjct: 121 XIISGSRDKTIKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVK 179
Query: 468 CFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512
++ ++E H ++ +T P L+A+ G+D + LW
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 27/237 (11%)
Query: 277 EMLASGSQDGKIKVWRI-----RSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 331
+L S S+D + W++ + G +R + HS V + DG+ LS S+D T
Sbjct: 31 NLLLSASRDKTLISWKLTGDDQKFGVPVRSF-KGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 332 RIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 391
R+ + +G+ + F GH S V S +++ S D T+KVW +K CL T
Sbjct: 90 RLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKG-QCLAT----- 143
Query: 392 PLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKRE-GGDFVA--- 447
L G + V+ V + P + S I + VK+++ + + DF+
Sbjct: 144 -LLGHNDWVSQVRVVPNEK-----ADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNS 197
Query: 448 ----ACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLA 500
SP G I G+D + ++ + K + + + +V + P+R LA
Sbjct: 198 NINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQD-EVFSLAFSPNRYWLA 253
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 253 QYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTS 312
Q+Q + F+ H+ + + S D ++AS +DG+I +W + + + L A E V S
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLS-AQDE-VFS 242
Query: 313 LVFSRDGSQILSTSFDSTARIHGLKSGKLLK----EFRGHSS----YVNDAIFTNDGSRV 364
L FS + L+ + + ++ L L+ EF G+S + ++ DG +
Sbjct: 243 LAFSPN-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTL 301
Query: 365 VTASSDCTVKVWDLKSTD 382
+D ++VW + + +
Sbjct: 302 FAGYTDNVIRVWQVXTAN 319
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 113/264 (42%), Gaps = 11/264 (4%)
Query: 252 LQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVT 311
++ +TF + V I+F + + G++++W + +R ++ + V
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP-VR 59
Query: 312 SLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC 371
+ F + I+ S D R+ +G+ + +F H Y+ V++ S D
Sbjct: 60 AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 372 TVKVWDLKSTDCL-QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ 430
TVK+W+ ++ L QTF+ G + V V PK+P ++ + +L GQ
Sbjct: 120 TVKLWNWENNWALEQTFE------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-GQ 172
Query: 431 VVKSF--SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI 488
+F ++G+ G ++V P ++ +D + + +Q+ ++ H +V
Sbjct: 173 STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVS 232
Query: 489 GVTHHPHRNLLATYGEDCTMKLWK 512
HP ++ + ED T+K+W
Sbjct: 233 FAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 113/264 (42%), Gaps = 11/264 (4%)
Query: 252 LQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVT 311
++ +TF + V I+F + + G++++W + +R ++ + V
Sbjct: 1 MKLDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP-VR 59
Query: 312 SLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDC 371
+ F + I+ S D R+ +G+ + +F H Y+ V++ S D
Sbjct: 60 AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL 119
Query: 372 TVKVWDLKSTDCL-QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQ 430
TVK+W+ ++ L QTF+ G + V V PK+P ++ + +L GQ
Sbjct: 120 TVKLWNWENNWALEQTFE------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-GQ 172
Query: 431 VVKSF--SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVI 488
+F ++G+ G ++V P ++ +D + + +Q+ ++ H +V
Sbjct: 173 STPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVS 232
Query: 489 GVTHHPHRNLLATYGEDCTMKLWK 512
HP ++ + ED T+K+W
Sbjct: 233 FAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 10/194 (5%)
Query: 205 SHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHD 264
+H IK ECA F+P+GQ + D + LS + +D H
Sbjct: 101 THAIKLHCPWVMECA-FAPNGQSVACGGLDSACSIF--NLSSQADRDGNMPVSRVLTGHK 157
Query: 265 ETVLCIEFSRDSEM-LASGSQDGKIKVWRIRSGQCLR----RLERAHSEGVTSL-VFSRD 318
++ D E L +GS D +W + +GQ + H+ V SL + S +
Sbjct: 158 GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLN 217
Query: 319 GSQILSTSFDSTARIHGLK-SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
+ +S S D+T R+ L+ + + ++ + GH +N F DG R T S D T +++D
Sbjct: 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277
Query: 378 LKSTDCLQTFKPPP 391
+++ LQ + P
Sbjct: 278 MRTGHQLQVYNREP 291
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/250 (21%), Positives = 102/250 (40%), Gaps = 25/250 (10%)
Query: 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 317
T H V ++++ + + S SQDG++ VW + Q + + H V F+
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAI-KLHCPWVMECAFAP 118
Query: 318 DGSQILSTSFDSTARIHGLKSGK-------LLKEFRGHSSYVNDAIFTNDG-SRVVTASS 369
+G + DS I L S + + GH Y + + D +R++T S
Sbjct: 119 NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSG 178
Query: 370 DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV--VCNKTSSIYIMTL 427
D T +WD+ + + F P G A V S+ + N + + C+ T ++ + +
Sbjct: 179 DQTCVLWDVTTGQRISIFGSEFP-SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI 237
Query: 428 QGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDV 487
+ V+++ + GD + P G+ +D F ++G H ++V+ ++
Sbjct: 238 TSRAVRTYHGHE---GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNRE- 290
Query: 488 IGVTHHPHRN 497
P RN
Sbjct: 291 ------PDRN 294
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 13/176 (7%)
Query: 211 GTKSHAECARFSPDGQF-LVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLC 269
G K +A ++ PD + L++ S D V+WD +G+ + E H VL
Sbjct: 155 GHKGYASSCQYVPDQETRLITGSGDQTC-VLWDVTTGQ---RISIFGSEFPSGHTADVLS 210
Query: 270 IEF-SRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD 328
+ S ++ M SGS D +++W +R R H + S+ F DG + + S D
Sbjct: 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270
Query: 329 STARIHGLKSGKLLKEFR-------GHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
T R+ +++G L+ + V F+ G + S+ VWD
Sbjct: 271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 220 RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDE--TVLCIEFSRDSE 277
+F PDGQ + S DG + +D +G LQ E +E V + FS
Sbjct: 256 KFFPDGQRFGTGSDDGTCRL-FDMRTGH---QLQVYNREPDRNDNELPIVTSVAFSISGR 311
Query: 278 MLASGSQDGKIKVWRIRSGQC---LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARI 333
+L +G +G VW + L L+ +H ++ L S DGS + + S+D +I
Sbjct: 312 LLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280
FS G+ L + +G VWD L ++ +L + H+ + C+ S D L
Sbjct: 306 FSISGRLLFAGYSNGDC-YVWDTLLAEMVLNLGTLQNS----HEGRISCLGLSSDGSALC 360
Query: 281 SGSQDGKIKVW 291
+GS D +K+W
Sbjct: 361 TGSWDKNLKIW 371
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 106/245 (43%), Gaps = 46/245 (18%)
Query: 273 SRDSEMLASGSQDGKIKVWRIRSGQ------CLRRLERAHSEGVTSLVFSRDGSQILSTS 326
+ DS +L SGS+D + +W++ + + H+ V+ L S++ +S+S
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 327 FDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQT 386
+D T R+ L++G K F GH S V F+ D ++++A ++ +K+W++
Sbjct: 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL------- 148
Query: 387 FKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFV 446
G+ +S +N V C + S I +KS
Sbjct: 149 ---------GECKFSSAE--KENHSDWVSCVRYSPI---------MKS------------ 176
Query: 447 AACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDC 506
A V P + VG D L + + + ++ + K HE +V ++ P+ +AT G+D
Sbjct: 177 ANKVQPFAPYFASVGWDGRLKVW-NTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDK 235
Query: 507 TMKLW 511
+ +W
Sbjct: 236 KLLIW 240
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 27/193 (13%)
Query: 227 FLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDG 286
F +S S+D + + WD +G K F+ H V + FS D+ + S +
Sbjct: 90 FAISSSWDKTLRL-WDLRTGTTYK--------RFVGHQSEVYSVAFSPDNRQILSAGAER 140
Query: 287 KIKVWRIRSGQC-LRRLERA-HSEGVTSLVFS-----RDGSQILSTSFDSTARIHGLK-- 337
+IK+W I G+C E+ HS+ V+ + +S + Q + F S LK
Sbjct: 141 EIKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW 199
Query: 338 --SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRG 395
+ ++ F+ H S VN + +G + T D + +WD+ L P
Sbjct: 200 NTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI-----LNLTYPQREFDA 254
Query: 396 GDASVNSVHLFPK 408
G +++N + PK
Sbjct: 255 G-STINQIAFNPK 266
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 34/225 (15%)
Query: 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQI 322
H+ V + S+++ S S D +++W +R+G +R SE V S+ FS D QI
Sbjct: 75 HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSE-VYSVAFSPDNRQI 133
Query: 323 LSTSFDSTARIHGL----KSGKLLKEFRGHSSYVNDAIFT---NDGSRV-------VTAS 368
LS + ++ + K KE HS +V+ ++ ++V +
Sbjct: 134 LSAGAEREIKLWNILGECKFSSAEKE--NHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 369 SDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 428
D +KVW+ F+ + +++VN + + P N +I K + I
Sbjct: 192 WDGRLKVWN-------TNFQIRYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWD-- 241
Query: 429 GQVVKSFSSGKRE---GGDFVAACVSPKGEWIYCVGEDRNLYCFS 470
+ + + +RE G +PK +W+ VG D+ + F+
Sbjct: 242 ---ILNLTYPQREFDAGSTINQIAFNPKLQWV-AVGTDQGVKIFN 282
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 218 CARFSP--DGQFLVSCSFDGFIEVVWDYLSGKLK-KDLQYQADETFMMHDETVLCIEFSR 274
C R+SP V F V WD G+LK + +Q TF H+ V + S
Sbjct: 167 CVRYSPIMKSANKVQPFAPYFASVGWD---GRLKVWNTNFQIRYTFKAHESNVNHLSISP 223
Query: 275 DSEMLASGSQDGKIKVWRI 293
+ + +A+G +D K+ +W I
Sbjct: 224 NGKYIATGGKDKKLLIWDI 242
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 27/193 (13%)
Query: 259 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHS-----EGVTSL 313
T H VLC+++ +D + S SQDGK+ VW + + H+ V +
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT------TNKEHAVTMPCTWVMAC 112
Query: 314 VFSRDGSQILSTSFDSTARIHGLKSGK------LLKEFRGHSSYVNDAIFTNDGSRVVTA 367
++ G I D+ ++ L K K H++Y++ FTN +++TA
Sbjct: 113 AYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTA 172
Query: 368 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVV---CNKTSSIYI 424
S D T +WD++S LQ+F G A V + L P + V C+K + ++
Sbjct: 173 SGDGTCALWDVESGQLLQSF------HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 425 MTLQGQVVKSFSS 437
M GQ V++F +
Sbjct: 227 MR-SGQCVQAFET 238
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 86/216 (39%), Gaps = 57/216 (26%)
Query: 207 TIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDET 266
++ T + C+ + D Q L + S DG +WD SG+L ++F H
Sbjct: 149 SVAMHTNYLSACSFTNSDMQILTA-SGDGTC-ALWDVESGQLL--------QSFHGHGAD 198
Query: 267 VLCIEF--SRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILS 324
VLC++ S SG D K VW +RSGQC++ E H V S+ + G S
Sbjct: 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFAS 257
Query: 325 TSFDSTARIHGLK------------------------SGKLL---------------KEF 345
S D+T R++ L+ SG+LL K
Sbjct: 258 GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317
Query: 346 R-----GHSSYVNDAIFTNDGSRVVTASSDCTVKVW 376
R GH + V+ + DG+ + S D T++VW
Sbjct: 318 RVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 111/258 (43%), Gaps = 11/258 (4%)
Query: 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 317
+TF + V I+F + + G++++W + +R ++ + V + F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETP-VRAGKFIA 65
Query: 318 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
+ I+ S D R+ +G+ + +F H Y+ V++ S D TVK+W+
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 378 LKSTDCL-QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSF- 435
++ L QTF+ G + V V PK+P ++ + +L GQ +F
Sbjct: 126 WENNWALEQTFE------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-GQSTPNFT 178
Query: 436 -SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494
++G+ G ++V P ++ +D + + +Q+ ++ H +V HP
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Query: 495 HRNLLATYGEDCTMKLWK 512
++ + ED T+K+W
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 253 QYQADETFMMHDETVLCIEFS-RDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVT 311
+ ++TF H+ V+C+ F+ +D ASG D +KVW + L GV
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 312 SLVFSR--DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS 369
+ + D +++ S D T +I ++ + GH S V+ A+F +++ S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 370 DCTVKVWD 377
D T+K+W+
Sbjct: 249 DGTLKIWN 256
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 111/258 (43%), Gaps = 11/258 (4%)
Query: 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSR 317
+TF + V I+F + + G++++W + +R ++ + V + F
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP-VRAGKFIA 65
Query: 318 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
+ I+ S D R+ +G+ + +F H Y+ V++ S D TVK+W+
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 378 LKSTDCL-QTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSF- 435
++ L QTF+ G + V V PK+P ++ + +L GQ +F
Sbjct: 126 WENNWALEQTFE------GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-GQSTPNFT 178
Query: 436 -SSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494
++G+ G ++V P ++ +D + + +Q+ ++ H +V HP
Sbjct: 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Query: 495 HRNLLATYGEDCTMKLWK 512
++ + ED T+K+W
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 253 QYQADETFMMHDETVLCIEFS-RDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVT 311
+ ++TF H+ V+C+ F+ +D ASG D +KVW + L GV
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 312 SLVFSR--DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASS 369
+ + D +++ S D T +I ++ + GH S V+ A+F +++ S
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE 248
Query: 370 DCTVKVWD 377
D T+K+W+
Sbjct: 249 DGTLKIWN 256
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 29/185 (15%)
Query: 206 HTIKFGTKSHAECA-RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHD 264
H S C R++PDG+ L S D + V W G + + +TF H
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV-WPSAPG----EGGWVPLQTFTQHQ 287
Query: 265 ETVLCIEF-SRDSEMLASG--SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQ 321
V + + S +LA+G + D I++W + SG CL ++ AHS+ V S+++S +
Sbjct: 288 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ-VCSILWSPHYKE 345
Query: 322 ILSTSFDSTARIHGLKSGKLL----------KEFRGHSSYVNDAIFTNDGSRVVTASSDC 371
++S HG +L+ E +GH+S V + DG+ V +A++D
Sbjct: 346 LISG--------HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 397
Query: 372 TVKVW 376
T+++W
Sbjct: 398 TLRLW 402
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 272 FSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 331
S +S +L+SGS+ G I +R + HS+ V L ++ DG + S D+
Sbjct: 206 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 265
Query: 332 RIHGLKSGK----LLKEFRGHSSYVNDAIFTNDGSRVVT---ASSDCTVKVWDLKSTDCL 384
+ G+ L+ F H V + S V+ +SD +++W++ S CL
Sbjct: 266 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 325
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 29/185 (15%)
Query: 206 HTIKFGTKSHAECA-RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHD 264
H S C R++PDG+ L S D + V W G + + +TF H
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV-WPSAPG----EGGWVPLQTFTQHQ 276
Query: 265 ETVLCIEF-SRDSEMLASG--SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQ 321
V + + S +LA+G + D I++W + SG CL ++ AHS+ V S+++S +
Sbjct: 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ-VCSILWSPHYKE 334
Query: 322 ILSTSFDSTARIHGLKSGKLL----------KEFRGHSSYVNDAIFTNDGSRVVTASSDC 371
++S HG +L+ E +GH+S V + DG+ V +A++D
Sbjct: 335 LISG--------HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 386
Query: 372 TVKVW 376
T+++W
Sbjct: 387 TLRLW 391
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 272 FSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 331
S +S +L+SGS+ G I +R + HS+ V L ++ DG + S D+
Sbjct: 195 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 254
Query: 332 RIHGLKSGK----LLKEFRGHSSYVNDAIFTNDGSRVVT---ASSDCTVKVWDLKSTDCL 384
+ G+ L+ F H V + S V+ +SD +++W++ S CL
Sbjct: 255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 29/185 (15%)
Query: 206 HTIKFGTKSHAECA-RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHD 264
H S C R++PDG+ L S D + V W G+ + +TF H
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV-WPSAPGEGG----WVPLQTFTQHQ 196
Query: 265 ETVLCIEF-SRDSEMLASG--SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQ 321
V + + S +LA+G + D I++W + SG CL ++ AHS+ V S+++S +
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ-VCSILWSPHYKE 254
Query: 322 ILSTSFDSTARIHGLKSGKLL----------KEFRGHSSYVNDAIFTNDGSRVVTASSDC 371
++S HG +L+ E +GH+S V + DG+ V +A++D
Sbjct: 255 LISG--------HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADE 306
Query: 372 TVKVW 376
T+++W
Sbjct: 307 TLRLW 311
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 271 EFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDST 330
S +S +L+SGS+ G I +R + HS+ V L ++ DG + S D+
Sbjct: 114 SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 173
Query: 331 ARIHGLKSGK----LLKEFRGHSSYVNDAIFTNDGSRVVT---ASSDCTVKVWDLKSTDC 383
+ G+ L+ F H V + S V+ +SD +++W++ S C
Sbjct: 174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 233
Query: 384 L 384
L
Sbjct: 234 L 234
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 25/180 (13%)
Query: 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS 283
D +++VS S D I+V W+ + + + T H + C+++ RD ++ SGS
Sbjct: 265 DDKYIVSASGDRTIKV-WNTSTCEFVR--------TLNGHKRGIACLQY-RD-RLVVSGS 313
Query: 284 QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL------- 336
D I++W I G CLR LE H E V + F D +I+S ++D ++ L
Sbjct: 314 SDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPR 370
Query: 337 -KSGKL-LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLR 394
+G L L+ HS V F D ++V++S D T+ +WD + Q P P R
Sbjct: 371 APAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSR 428
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 19/168 (11%)
Query: 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS 283
D Q +VS D I++ WD + + K+ L H +VLC+++ D ++ +GS
Sbjct: 142 DDQKIVSGLRDNTIKI-WDKNTLECKRILT--------GHTGSVLCLQY--DERVIITGS 190
Query: 284 QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG---K 340
D ++VW + +G+ L L H E V L F + +++ S D + + + S
Sbjct: 191 SDSTVRVWDVNTGEMLNTLIH-HCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDIT 247
Query: 341 LLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 388
L + GH + VN F D +V+AS D T+KVW+ + + ++T
Sbjct: 248 LRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN 293
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 90/219 (41%), Gaps = 29/219 (13%)
Query: 302 LERAH-----SEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAI 356
L+R H S+GV L + D +I+S D+T +I + + + GH+ V
Sbjct: 123 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LC 178
Query: 357 FTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVC 416
D ++T SSD TV+VWD+ + + L T +V N +V C
Sbjct: 179 LQYDERVIITGSSDSTVRVWDVNTGEMLNTLI---------HHCEAVLHLRFNNGMMVTC 229
Query: 417 NKTSSIYIMTLQGQ---VVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQS 473
+K SI + + ++ G R + V ++I DR + ++ +
Sbjct: 230 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNV----VDFDDKYIVSASGDRTIKVWNTST 285
Query: 474 GKLEHLMKVHEKDVIGVTHHPHRNLLATYG-EDCTMKLW 511
+ + H++ G+ +R+ L G D T++LW
Sbjct: 286 CEFVRTLNGHKR---GIACLQYRDRLVVSGSSDNTIRLW 321
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 71/133 (53%), Gaps = 7/133 (5%)
Query: 264 DETVLCIEFSRDS---EMLASGSQDGKIKVWRIR-SGQCLRRLERAHSEGVTSLVFSRDG 319
D+++ C+ FS + L +GS ++ W ++ SGQ + + ++ H+ V + +S DG
Sbjct: 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDG 98
Query: 320 SQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDA--IFTNDGSRVVTASSDCTVKVWD 377
S++ + S D TA++ L S + + + H + V I + S V+T S D T+K WD
Sbjct: 99 SKVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
Query: 378 LKSTDCLQTFKPP 390
+S++ + + P
Sbjct: 158 TRSSNPMMVLQLP 170
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 10/128 (7%)
Query: 218 CARFSPD---GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSR 274
C FSP G FL++ S+ + SG+ Q MH VL + +S
Sbjct: 44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ-------QMHTGPVLDVCWSD 96
Query: 275 DSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIH 334
D + + S D K+W + S Q ++ + + + + S +++ S+D T +
Sbjct: 97 DGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
Query: 335 GLKSGKLL 342
+S +
Sbjct: 157 DTRSSNPM 164
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 117/269 (43%), Gaps = 23/269 (8%)
Query: 252 LQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVT 311
+Q + T H + + + DS +L S SQDGK+ +W + + + S V
Sbjct: 54 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVM 112
Query: 312 SLVFSRDGSQILSTSFDSTARIHGLKSG----KLLKEFRGHSSYVNDAIFTNDGSRVVTA 367
+ ++ G+ + D+ I+ LK+ ++ +E GH+ Y++ F +D +++VT+
Sbjct: 113 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTS 171
Query: 368 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV-VCNKTSSIYIMT 426
S D T +WD+++ GD V S+ L P + C+ ++ ++ +
Sbjct: 172 SGDTTCALWDIET----GQQTTTFTGHTGD--VMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 427 LQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKD 486
+G ++F+ + D A C P G +D F ++ + E + H+
Sbjct: 226 -EGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNI 280
Query: 487 VIGVT----HHPHRNLLATYGEDCTMKLW 511
+ G+T R LLA Y +D +W
Sbjct: 281 ICGITSVSFSKSGRLLLAGY-DDFNCNVW 308
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 10/201 (4%)
Query: 196 VEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLK-KDLQY 254
+ D Y T H I + CA ++P G ++ D + LK ++
Sbjct: 92 IWDSYTTNKVHAIPLRSSWVMTCA-YAPSGNYVACGGLDNICSIY------NLKTREGNV 144
Query: 255 QADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLV 314
+ H + C F D++++ S S D +W I +GQ H+ V SL
Sbjct: 145 RVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQ-QTTTFTGHTGDVMSLS 202
Query: 315 FSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVK 374
+ D +S + D++A++ ++ G + F GH S +N F +G+ T S D T +
Sbjct: 203 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 262
Query: 375 VWDLKSTDCLQTFKPPPPLRG 395
++DL++ L T+ + G
Sbjct: 263 LFDLRADQELMTYSHDNIICG 283
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280
+PD + VS + D ++ WD G + +TF H+ + I F + A
Sbjct: 203 LAPDTRLFVSGACDASAKL-WDVREGMCR--------QTFTGHESDINAICFFPNGNAFA 253
Query: 281 SGSQDGKIKVWRIRSGQCLRRLERAHSE---GVTSLVFSRDGSQILSTSFDSTARIHGLK 337
+GS D +++ +R+ Q L + +H G+TS+ FS+ G +L+ D +
Sbjct: 254 TGSDDATCRLFDLRADQEL--MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 311
Query: 338 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
GH + V+ T+DG V T S D +K+W+
Sbjct: 312 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 117/269 (43%), Gaps = 23/269 (8%)
Query: 252 LQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVT 311
+Q + T H + + + DS +L S SQDGK+ +W + + + S V
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVM 101
Query: 312 SLVFSRDGSQILSTSFDSTARIHGLKSG----KLLKEFRGHSSYVNDAIFTNDGSRVVTA 367
+ ++ G+ + D+ I+ LK+ ++ +E GH+ Y++ F +D +++VT+
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTS 160
Query: 368 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV-VCNKTSSIYIMT 426
S D T +WD+++ GD V S+ L P + C+ ++ ++ +
Sbjct: 161 SGDTTCALWDIET----GQQTTTFTGHTGD--VMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 427 LQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKD 486
+G ++F+ + D A C P G +D F ++ + E + H+
Sbjct: 215 -EGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNI 269
Query: 487 VIGVT----HHPHRNLLATYGEDCTMKLW 511
+ G+T R LLA Y +D +W
Sbjct: 270 ICGITSVSFSKSGRLLLAGY-DDFNCNVW 297
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 10/201 (4%)
Query: 196 VEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLK-KDLQY 254
+ D Y T H I + CA ++P G ++ D + LK ++
Sbjct: 81 IWDSYTTNKVHAIPLRSSWVMTCA-YAPSGNYVACGGLDNICSIY------NLKTREGNV 133
Query: 255 QADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLV 314
+ H + C F D++++ S S D +W I +GQ H+ V SL
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQ-QTTTFTGHTGDVMSLS 191
Query: 315 FSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVK 374
+ D +S + D++A++ ++ G + F GH S +N F +G+ T S D T +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 375 VWDLKSTDCLQTFKPPPPLRG 395
++DL++ L T+ + G
Sbjct: 252 LFDLRADQELMTYSHDNIICG 272
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280
+PD + VS + D ++ WD G + +TF H+ + I F + A
Sbjct: 192 LAPDTRLFVSGACDASAKL-WDVREGMCR--------QTFTGHESDINAICFFPNGNAFA 242
Query: 281 SGSQDGKIKVWRIRSGQCLRRLERAHSE---GVTSLVFSRDGSQILSTSFDSTARIHGLK 337
+GS D +++ +R+ Q L + +H G+TS+ FS+ G +L+ D +
Sbjct: 243 TGSDDATCRLFDLRADQEL--MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 338 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
GH + V+ T+DG V T S D +K+W+
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 117/269 (43%), Gaps = 23/269 (8%)
Query: 252 LQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVT 311
+Q + T H + + + DS +L S SQDGK+ +W + + + S V
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVM 101
Query: 312 SLVFSRDGSQILSTSFDSTARIHGLKSG----KLLKEFRGHSSYVNDAIFTNDGSRVVTA 367
+ ++ G+ + D+ I+ LK+ ++ +E GH+ Y++ F +D +++VT+
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTS 160
Query: 368 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV-VCNKTSSIYIMT 426
S D T +WD+++ GD V S+ L P + C+ ++ ++ +
Sbjct: 161 SGDTTCALWDIET----GQQTTTFTGHTGD--VMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 427 LQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKD 486
+G ++F+ + D A C P G +D F ++ + E + H+
Sbjct: 215 -EGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNI 269
Query: 487 VIGVT----HHPHRNLLATYGEDCTMKLW 511
+ G+T R LLA Y +D +W
Sbjct: 270 ICGITSVSFSKSGRLLLAGY-DDFNCNVW 297
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 10/201 (4%)
Query: 196 VEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLK-KDLQY 254
+ D Y T H I + CA ++P G ++ D + LK ++
Sbjct: 81 IWDSYTTNKVHAIPLRSSWVMTCA-YAPSGNYVACGGLDNICSIY------NLKTREGNV 133
Query: 255 QADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLV 314
+ H + C F D++++ S S D +W I +GQ H+ V SL
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQ-QTTTFTGHTGDVMSLS 191
Query: 315 FSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVK 374
+ D +S + D++A++ ++ G + F GH S +N F +G+ T S D T +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 375 VWDLKSTDCLQTFKPPPPLRG 395
++DL++ L T+ + G
Sbjct: 252 LFDLRADQELMTYSHDNIICG 272
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280
+PD + VS + D ++ WD G + +TF H+ + I F + A
Sbjct: 192 LAPDTRLFVSGACDASAKL-WDVREGMCR--------QTFTGHESDINAICFFPNGNAFA 242
Query: 281 SGSQDGKIKVWRIRSGQCLRRLERAHSE---GVTSLVFSRDGSQILSTSFDSTARIHGLK 337
+GS D +++ +R+ Q L + +H G+TS+ FS+ G +L+ D +
Sbjct: 243 TGSDDATCRLFDLRADQEL--MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 338 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
GH + V+ T+DG V T S D +K+W+
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 117/269 (43%), Gaps = 23/269 (8%)
Query: 252 LQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVT 311
+Q + T H + + + DS +L S SQDGK+ +W + + + S V
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVM 101
Query: 312 SLVFSRDGSQILSTSFDSTARIHGLKSG----KLLKEFRGHSSYVNDAIFTNDGSRVVTA 367
+ ++ G+ + D+ I+ LK+ ++ +E GH+ Y++ F +D +++VT+
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTS 160
Query: 368 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV-VCNKTSSIYIMT 426
S D T +WD+++ GD V S+ L P + C+ ++ ++ +
Sbjct: 161 SGDTTCALWDIET----GQQTTTFTGHTGD--VMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 427 LQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKD 486
+G ++F+ + D A C P G +D F ++ + E + H+
Sbjct: 215 -EGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNI 269
Query: 487 VIGVT----HHPHRNLLATYGEDCTMKLW 511
+ G+T R LLA Y +D +W
Sbjct: 270 ICGITSVSFSKSGRLLLAGY-DDFNCNVW 297
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 10/201 (4%)
Query: 196 VEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLK-KDLQY 254
+ D Y T H I + CA ++P G ++ D + LK ++
Sbjct: 81 IWDSYTTNKVHAIPLRSSWVMTCA-YAPSGNYVACGGLDNICSIY------NLKTREGNV 133
Query: 255 QADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLV 314
+ H + C F D++++ S S D +W I +GQ H+ V SL
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQ-QTTTFTGHTGDVMSLS 191
Query: 315 FSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVK 374
+ D +S + D++A++ ++ G + F GH S +N F +G+ T S D T +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 375 VWDLKSTDCLQTFKPPPPLRG 395
++DL++ L T+ + G
Sbjct: 252 LFDLRADQELMTYSHDNIICG 272
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280
+PD + VS + D ++ WD G + +TF H+ + I F + A
Sbjct: 192 LAPDTRLFVSGACDASAKL-WDVREGMCR--------QTFTGHESDINAICFFPNGNAFA 242
Query: 281 SGSQDGKIKVWRIRSGQCLRRLERAHSE---GVTSLVFSRDGSQILSTSFDSTARIHGLK 337
+GS D +++ +R+ Q L + +H G+TS+ FS+ G +L+ D +
Sbjct: 243 TGSDDATCRLFDLRADQEL--MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 338 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
GH + V+ T+DG V T S D +K+W+
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 117/269 (43%), Gaps = 23/269 (8%)
Query: 252 LQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVT 311
+Q + T H + + + DS +L S SQDGK+ +W + + + S V
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVM 101
Query: 312 SLVFSRDGSQILSTSFDSTARIHGLKSG----KLLKEFRGHSSYVNDAIFTNDGSRVVTA 367
+ ++ G+ + D+ I+ LK+ ++ +E GH+ Y++ F +D +++VT+
Sbjct: 102 TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTS 160
Query: 368 SSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV-VCNKTSSIYIMT 426
S D T +WD+++ GD V S+ L P + C+ ++ ++ +
Sbjct: 161 SGDTTCALWDIET----GQQTTTFTGHTGD--VMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 427 LQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKD 486
+G ++F+ + D A C P G +D F ++ + E + H+
Sbjct: 215 -EGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNI 269
Query: 487 VIGVT----HHPHRNLLATYGEDCTMKLW 511
+ G+T R LLA Y +D +W
Sbjct: 270 ICGITSVSFSKSGRLLLAGY-DDFNCNVW 297
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 86/201 (42%), Gaps = 10/201 (4%)
Query: 196 VEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLK-KDLQY 254
+ D Y T H I + CA ++P G ++ D + LK ++
Sbjct: 81 IWDSYTTNKVHAIPLRSSWVMTCA-YAPSGNYVACGGLDNICSIY------NLKTREGNV 133
Query: 255 QADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLV 314
+ H + C F D++++ S S D +W I +GQ H+ V SL
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQ-QTTTFTGHTGDVMSLS 191
Query: 315 FSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVK 374
+ D +S + D++A++ ++ G + F GH S +N F +G+ T S D T +
Sbjct: 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCR 251
Query: 375 VWDLKSTDCLQTFKPPPPLRG 395
++DL++ L T+ + G
Sbjct: 252 LFDLRADQELMTYSHDNIICG 272
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 14/160 (8%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280
+PD + VS + D ++ WD G + +TF H+ + I F + A
Sbjct: 192 LAPDTRLFVSGACDASAKL-WDVREGMCR--------QTFTGHESDINAICFFPNGNAFA 242
Query: 281 SGSQDGKIKVWRIRSGQCLRRLERAHSE---GVTSLVFSRDGSQILSTSFDSTARIHGLK 337
+GS D +++ +R+ Q L + +H G+TS+ FS+ G +L+ D +
Sbjct: 243 TGSDDATCRLFDLRADQEL--MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 338 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
GH + V+ T+DG V T S D +K+W+
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 282 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 341
G+ +G IKV + R +++AH +T L F G ++S+S D +I +K G
Sbjct: 112 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 170
Query: 342 LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVN 401
+ GH + V D + G V++AS D T+++W+ + + TF G VN
Sbjct: 171 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDG---VN 227
Query: 402 SVHLF 406
S+ LF
Sbjct: 228 SIALF 232
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 251 DLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGV 310
+LQ + D+ H + ++F E L S SQD ++K+W ++ G R L H V
Sbjct: 126 NLQREIDQA---HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL-IGHRATV 181
Query: 311 TSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR 346
T + G +LS S D T R+ +G + F
Sbjct: 182 TDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 217
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 220 RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 279
+F P G+ L+S S D +++ W G + T + H TV I +
Sbjct: 143 KFFPSGEALISSSQDMQLKI-WSVKDGSNPR--------TLIGHRATVTDIAIIDRGRNV 193
Query: 280 ASGSQDGKIKVWRIRSGQCLRRLERAHS--EGVTSLVF 315
S S DG I++W +G + R + +GV S+
Sbjct: 194 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 231
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 282 GSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKL 341
G+ +G IKV + R +++AH +T L F G ++S+S D +I +K G
Sbjct: 115 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173
Query: 342 LKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVN 401
+ GH + V D + G V++AS D T+++W+ + + TF G VN
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDG---VN 230
Query: 402 SVHLF 406
S+ LF
Sbjct: 231 SIALF 235
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 251 DLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGV 310
+LQ + D+ H + ++F E L S SQD ++K+W ++ G R L H V
Sbjct: 129 NLQREIDQA---HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL-IGHRATV 184
Query: 311 TSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFR 346
T + G +LS S D T R+ +G + F
Sbjct: 185 TDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN 220
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 220 RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 279
+F P G+ L+S S D +++ W G + T + H TV I +
Sbjct: 146 KFFPSGEALISSSQDMQLKI-WSVKDGSNPR--------TLIGHRATVTDIAIIDRGRNV 196
Query: 280 ASGSQDGKIKVWRIRSGQCLRRLERAHS--EGVTSLVF 315
S S DG I++W +G + R + +GV S+
Sbjct: 197 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 13/161 (8%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280
+SP G +L S SFD +W K ++ T H+ V + ++ +LA
Sbjct: 69 WSPCGNYLASASFDA-TTCIWK------KNQDDFECVTTLEGHENEVKSVAWAPSGNLLA 121
Query: 281 SGSQDGKIKVWRIRSG---QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK 337
+ S+D + VW + +C+ L +H++ V +V+ + S S+D T +++ +
Sbjct: 122 TCSRDKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVKLYREE 180
Query: 338 SGKLL--KEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVW 376
+ GH S V F G R+ + S D TV++W
Sbjct: 181 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 94/239 (39%), Gaps = 28/239 (11%)
Query: 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCI 270
G ++ + ++P G L +CS D + VW + ++ ++ +Y+ H + V +
Sbjct: 103 GHENEVKSVAWAPSGNLLATCSRD---KSVWVW---EVDEEDEYECVSVLNSHTQDVKHV 156
Query: 271 EFSRDSEMLASGSQDGKIKVWRIRSGQ--CLRRLERAHSEGVTSLVFSRDGSQILSTSFD 328
+ E+LAS S D +K++R C LE H V SL F G ++ S S D
Sbjct: 157 VWHPSQELLASASYDDTVKLYREEEDDWVCCATLE-GHESTVWSLAFDPSGQRLASCSDD 215
Query: 329 STARI---------HGLK------SGKLLKEFRG-HSSYVNDAIFTNDGSRVVTASSDCT 372
T RI G+ S K + G HS + D + + TA D
Sbjct: 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA 275
Query: 373 VKVW--DLKSTDCLQTFKPPPPLRGGDA-SVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 428
++V+ D S TF L + VN V PK P + C+ + Q
Sbjct: 276 IRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 84/228 (36%), Gaps = 39/228 (17%)
Query: 278 MLASGSQDGKIKVWRIR--SGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHG 335
+LAS D +I++W S C L H V + +S G+ + S SFD+T I
Sbjct: 30 LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK 89
Query: 336 LKSG--KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD---CLQ----- 385
+ + GH + V + G+ + T S D +V VW++ D C+
Sbjct: 90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149
Query: 386 -------TFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSG 438
+ P L + ++V L+ + D V C TL+G +S
Sbjct: 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC--------ATLEGHESTVWSLA 201
Query: 439 KREGGDFVAACVSPKGEWIY------------CVGEDRNLYCFSHQSG 474
G +A+C + I+ C G D + C SG
Sbjct: 202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 74/203 (36%), Gaps = 49/203 (24%)
Query: 313 LVFSRDGSQILSTSFDSTARIHGLKSGKLLKEF---RGHSSYVNDAIFTNDGSRVVTASS 369
L ++ G+ + S D RI G + + + GH V ++ G+ + +AS
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 370 DCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQG 429
D T +W D F+ L G + V SV P
Sbjct: 82 DATTCIWKKNQDD----FECVTTLEGHENEVKSVAWAPS--------------------- 116
Query: 430 QVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIG 489
G+ +A C K W++ V E+ C S ++ H +DV
Sbjct: 117 -------------GNLLATCSRDKSVWVWEVDEEDEYECVS--------VLNSHTQDVKH 155
Query: 490 VTHHPHRNLLATYGEDCTMKLWK 512
V HP + LLA+ D T+KL++
Sbjct: 156 VVWHPSQELLASASYDDTVKLYR 178
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 115/326 (35%), Gaps = 51/326 (15%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280
++P G L SC D I + + K + + H TV + +S LA
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEG------HQRTVRKVAWSPCGNYLA 77
Query: 281 SGSQDGKIKVWRIRSG--QCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 338
S S D +W+ +C+ LE H V S+ ++ G+ + + S D + + +
Sbjct: 78 SASFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136
Query: 339 G---KLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTD--CLQTFKPPPPL 393
+ + H+ V ++ + +AS D TVK++ + D C T L
Sbjct: 137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCAT------L 190
Query: 394 RGGDASVNSVHLFPKNPDHIVVC--NKTSSIYIMTLQGQVVKSFSSGKREG--------- 442
G +++V S+ P + C ++T I+ L G SG
Sbjct: 191 EGHESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSG 249
Query: 443 ---------------GDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDV 487
G AC I ED N HL + H +DV
Sbjct: 250 FHSRTIYDIAWCQLTGALATACGDDA---IRVFQEDPNSDPQQPTFSLTAHLHQAHSQDV 306
Query: 488 IGVTHHPHR-NLLATYGEDCTMKLWK 512
V +P LLA+ +D + WK
Sbjct: 307 NCVAWNPKEPGLLASCSDDGEVAFWK 332
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 83/195 (42%), Gaps = 35/195 (17%)
Query: 225 GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEF--SRDSEMLASG 282
G LVS S D + V WD G F H+ TV C++ ++ + + +G
Sbjct: 173 GGILVSGSTDRTVRV-WDIKKG--------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTG 223
Query: 283 SQDGKIKVWRI----------------------RSGQCLRRLERAHSEGVTSLVFSRDGS 320
S+D + VW++ + R H V ++ S G+
Sbjct: 224 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGN 281
Query: 321 QILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS 380
++S S+D+T + + K L GH+ + I+ ++ R ++AS D T+++WDL++
Sbjct: 282 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341
Query: 381 TDCLQTFKPPPPLRG 395
+ + T + L G
Sbjct: 342 GELMYTLQGHTALVG 356
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 29/147 (19%)
Query: 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSL--VFSRDGS 320
HD V ++++ +L SGS D ++VW I+ G C E H+ V L V ++
Sbjct: 161 HDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEYKNIK 218
Query: 321 QILSTSFDSTARIHGL-----------------------KSGKLLKEFRGHSSYVNDAIF 357
I++ S D+T + L ++ + RGH + V
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV-- 276
Query: 358 TNDGSRVVTASSDCTVKVWDLKSTDCL 384
+ G+ VV+ S D T+ VWD+ CL
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCL 303
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 300 RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN 359
R R H V + + D + +++ + D R++ + K L + GH V A+
Sbjct: 114 RTTLRGHMTSVITCLQFED-NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYA 171
Query: 360 DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP-KNPDHIVVCNK 418
G +V+ S+D TV+VWD+K C F+ G +++V + + KN +IV ++
Sbjct: 172 HGGILVSGSTDRTVRVWDIKKGCCTHVFE------GHNSTVRCLDIVEYKNIKYIVTGSR 225
Query: 419 TSSIYIMTL 427
+++++ L
Sbjct: 226 DNTLHVWKL 234
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 82/195 (42%), Gaps = 35/195 (17%)
Query: 225 GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEF--SRDSEMLASG 282
G LVS S D + V WD G F H+ TV C++ ++ + + +G
Sbjct: 173 GGILVSGSTDRTVRV-WDIKKG--------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTG 223
Query: 283 SQDGKIKVWRI----------------------RSGQCLRRLERAHSEGVTSLVFSRDGS 320
S+D + VW++ + R H V ++ S G+
Sbjct: 224 SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV--SGHGN 281
Query: 321 QILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS 380
++S S+D+T + + K L GH+ + I+ ++ R ++AS D T+++WDL++
Sbjct: 282 IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLEN 341
Query: 381 TDCLQTFKPPPPLRG 395
+ T + L G
Sbjct: 342 GELXYTLQGHTALVG 356
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 29/147 (19%)
Query: 263 HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSL--VFSRDGS 320
HD V ++++ +L SGS D ++VW I+ G C E H+ V L V ++
Sbjct: 161 HDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEYKNIK 218
Query: 321 QILSTSFDSTARIHGL-----------------------KSGKLLKEFRGHSSYVNDAIF 357
I++ S D+T + L ++ + RGH + V
Sbjct: 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV-- 276
Query: 358 TNDGSRVVTASSDCTVKVWDLKSTDCL 384
+ G+ VV+ S D T+ VWD+ CL
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCL 303
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 300 RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN 359
R R H V + + D + +++ + D R++ + K L + GH V A+
Sbjct: 114 RTTLRGHXTSVITCLQFED-NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVW-ALKYA 171
Query: 360 DGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP-KNPDHIVVCNK 418
G +V+ S+D TV+VWD+K C F+ G +++V + + KN +IV ++
Sbjct: 172 HGGILVSGSTDRTVRVWDIKKGCCTHVFE------GHNSTVRCLDIVEYKNIKYIVTGSR 225
Query: 419 TSSIYIMTL 427
+++++ L
Sbjct: 226 DNTLHVWKL 234
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%)
Query: 305 AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRV 364
H +T + ++++G + S S DS+A + +G+ L GH+ +
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYC 89
Query: 365 VTASSDCTVKVWDLKSTDCLQTFKPPPPLR 394
VT S+D ++K+WD+ + C+ T+K P P++
Sbjct: 90 VTGSADYSIKLWDVSNGQCVATWKSPVPVK 119
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 220 RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 279
+++ +G L SCS D V W L+G+ L H T+ I+ ++
Sbjct: 39 KYNKEGDLLFSCSKDSSASV-WYSLNGERLGTLD--------GHTGTIWSIDVDCFTKYC 89
Query: 280 ASGSQDGKIKVWRIRSGQCL 299
+GS D IK+W + +GQC+
Sbjct: 90 VTGSADYSIKLWDVSNGQCV 109
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 258 ETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQ--CLRRL-ERAHSEGVTSLV 314
++ ++ E + +FS+ +LA+GS D KIK+ ++ + L E AH + + S+
Sbjct: 8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVA 65
Query: 315 FSRDGSQILSTSFDSTARIHGLKSGK-------LLKEFRGHSSYVNDAIFTNDGSRVVTA 367
+ S + + SFDST I + LL GH + V ++NDG + T
Sbjct: 66 WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC 125
Query: 368 SSDCTVKVWD 377
S D +V +W+
Sbjct: 126 SRDKSVWIWE 135
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 17/143 (11%)
Query: 256 ADETFMM--------HDETVLCIEFSRDSEMLASGSQDGKIKVWRI-RSGQ---CLRRLE 303
AD TF M H+ V + +S D LA+ S+D + +W SG+ C+ L+
Sbjct: 91 ADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ 150
Query: 304 RAHSEGVTSLVFSRDGSQILSTSFDSTARIHGL--KSGKLLKEFRGHSSYVNDAIF--TN 359
HS+ V +++ + + S+S+D T RI + + GH V + F T
Sbjct: 151 E-HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTE 209
Query: 360 DGSRVVTASSDCTVKVWDLKSTD 382
R+ + S D TV+VW D
Sbjct: 210 GVFRLCSGSDDSTVRVWKYMGDD 232
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 12/172 (6%)
Query: 166 QALKWQQHQGLLPPGTQFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDG 225
+++ W+ H LL G+ FD A ++ + + L I+ G ++ + +S DG
Sbjct: 62 RSVAWRPHTSLLAAGS-FDSTVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSNDG 119
Query: 226 QFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285
+L +CS D + VW + + + + +Y+ H + V + + +LAS S D
Sbjct: 120 YYLATCSRD---KSVWIWETDESGE--EYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174
Query: 286 GKIKVWRIRSG--QCLRRLERAHSEGVTSLVFSRDGS--QILSTSFDSTARI 333
+++W+ +C+ L H V S F + ++ S S DST R+
Sbjct: 175 DTVRIWKDYDDDWECVAVL-NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 443 GDFVAACVSPKGEWIYCVGEDRNLY-CFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLAT 501
G ++A C K WI+ E Y C S +++ H +DV V HP LLA+
Sbjct: 119 GYYLATCSRDKSVWIWETDESGEEYECIS--------VLQEHSQDVKHVIWHPSEALLAS 170
Query: 502 YGEDCTMKLWK 512
D T+++WK
Sbjct: 171 SSYDDTVRIWK 181
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 60/285 (21%), Positives = 110/285 (38%), Gaps = 43/285 (15%)
Query: 257 DETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLE-------RAHSEG 309
DET H + + + + + +LA+GS D + +W + R E H
Sbjct: 53 DET--AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA-KEESADRTFEMDLLAIIEGHENE 109
Query: 310 VTSLVFSRDGSQILSTSFDSTARIHGL-KSGK---LLKEFRGHSSYVNDAIFTNDGSRVV 365
V + +S DG + + S D + I +SG+ + + HS V I+ + +
Sbjct: 110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLA 169
Query: 366 TASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIM 425
++S D TV++W D ++ L G + +V S F K +C+ + +
Sbjct: 170 SSSYDDTVRIW----KDYDDDWECVAVLNGHEGTVWSSD-FDKTEGVFRLCSGSDDSTV- 223
Query: 426 TLQGQVVKSFSSGKREGGDFVAACVSP--------KGEW-----IYCVGEDRNLYCFSHQ 472
+V K + + ++V + P W I VG D L +
Sbjct: 224 ----RVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEV 279
Query: 473 SGKLEHLMK------VHEKDVIGVTHHPHRNLLATYGEDCTMKLW 511
G+ + K V+E +V+ + +LAT G+D + W
Sbjct: 280 DGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFW 324
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 16/143 (11%)
Query: 269 CIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFD 328
C+ S D + +A G QD K+ V+++ H +TS+ FS +G+ +++T
Sbjct: 453 CVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS 512
Query: 329 STARIHGLKSGKLL---KEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQ 385
+ + + L + H++ V ++ D R+ T S D +V VW++
Sbjct: 513 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMN------ 566
Query: 386 TFKP---PPPLRGGDA--SVNSV 403
KP P ++G A SVNSV
Sbjct: 567 --KPSDHPIIIKGAHAMSSVNSV 587
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 254 YQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLER------AHS 307
++ TF H + V + ++ D + AS DG I ++ G E AHS
Sbjct: 180 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239
Query: 308 EGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK 343
V L +S DG++I S S D T +I + + K+ K
Sbjct: 240 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 275
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 69/162 (42%), Gaps = 4/162 (2%)
Query: 220 RFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADE-TFMMHDETVLCIEFSRDSEM 278
R++PDG S DG I V+++ + G K ++ D + H +V + +S D
Sbjct: 197 RYNPDGSLFASTGGDGTI-VLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 253
Query: 279 LASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 338
+AS S D IK+W + + + + + L ++S S + +
Sbjct: 254 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPEL 313
Query: 339 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS 380
G + + GH+ + + DG + +A ++ + WD+ +
Sbjct: 314 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 355
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 306 HSEGVTSLVFSRDGSQILSTSFDSTARIH----GLKSGKL----LKEFRGHSSYVNDAIF 357
H++ V S+ ++ DGS ST D T ++ G K+G LK HS V +
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV-AHSGSVFGLTW 247
Query: 358 TNDGSRVVTASSDCTVKVWDLKSTDCLQTF 387
+ DG+++ +AS+D T+K+W++ + +T
Sbjct: 248 SPDGTKIASASADKTIKIWNVATLKVEKTI 277
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280
FS +G FLV+ D +V+ Y + + + ++ H V C+ +S D+ LA
Sbjct: 499 FSNNGAFLVAT--DQSRKVI-PY---SVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 552
Query: 281 SGSQDGKIKVWRIR 294
+GS D + VW +
Sbjct: 553 TGSLDNSVIVWNMN 566
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 11/128 (8%)
Query: 393 LRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAAC-VS 451
L G ++NSV P P I+ + +++ I +G K F S E FV + +
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAI--FEGPPFK-FKSTFGEHTKFVHSVRYN 199
Query: 452 PKGEWIYCVGEDRNLYCFSHQSGKLEHLMK-------VHEKDVIGVTHHPHRNLLATYGE 504
P G G D + ++ G + + H V G+T P +A+
Sbjct: 200 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 259
Query: 505 DCTMKLWK 512
D T+K+W
Sbjct: 260 DKTIKIWN 267
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/286 (23%), Positives = 116/286 (40%), Gaps = 38/286 (13%)
Query: 240 VWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCL 299
VW+ SG + L + T+ V +++S D L+ G +G + ++ + S L
Sbjct: 117 VWNADSGSVSA-LAETDESTY------VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKL 169
Query: 300 RRLERAHSEGVTSLVFSRDGSQILSTSFDSTA------RIHGLKSGKLLKEFRGHSSYVN 353
R + H V L ++R +LS+ S A RI + G L +GHSS V
Sbjct: 170 RTMA-GHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTL----QGHSSEVC 221
Query: 354 DAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHI 413
+ +DG ++ + +D V++WD +S+ P +A+V +V P + +
Sbjct: 222 GLAWRSDGLQLASGGNDNVVQIWDARSS------IPKFTKTNHNAAVKAVAWCPWQSNLL 275
Query: 414 VVCNKTSSIYIM---TLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG--EDRNLYC 468
T I G V + +G + + SP + I D NL
Sbjct: 276 ATGGGTMDKQIHFWNAATGARVNTVDAGSQ----VTSLIWSPHSKEIMSTHGFPDNNLSI 331
Query: 469 FSHQSGKLEHLMKV--HEKDVIGVTHHPHRNLLATYGEDCTMKLWK 512
+S+ S L + + H+ V+ P +L+T D +K W+
Sbjct: 332 WSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEF-SRDSEMLASG 282
DG L S D +++ WD S K T H+ V + + S +LA+G
Sbjct: 228 DGLQLASGGNDNVVQI-WDARSSIPKF--------TKTNHNAAVKAVAWCPWQSNLLATG 278
Query: 283 --SQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSF--DSTARIHGLKS 338
+ D +I W +G + ++ VTSL++S +I+ST D+ I S
Sbjct: 279 GGTMDKQIHFWNAATGARVNTVDAGSQ--VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336
Query: 339 GKLLK--EFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGG 396
L K + H + V + + DG + TA+SD +K W + D ++ +P P +
Sbjct: 337 SGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK--RPIPITKTP 394
Query: 397 DASV 400
+S+
Sbjct: 395 SSSI 398
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 260 FMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDG 319
+ H + +EF+ +++L S S DG +++W +G + HS+ + S + D
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS-QNCFYGHSQSIVSASWVGD- 300
Query: 320 SQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLK 379
+++S S D + R+ LK LL + + DG + A D V V+DLK
Sbjct: 301 DKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLK 360
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 267 VLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTS 326
V C+ +S D + +G ++G++++W ++G L L H + S+ +++DG+ I+S
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVL-NFHRAPIVSVKWNKDGTHIISMD 168
Query: 327 FDSTARIHGLKSGKLLKEFR----GHSSYVNDAIFTNDGS 362
++ + + SG +++ F G SS +N + DGS
Sbjct: 169 VENVTILWNVISGTVMQHFELKETGGSS-INAENHSGDGS 207
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 13/166 (7%)
Query: 230 SCSFDGFIEVVWDYLS-GKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKI 288
S DGF++++ + + + DE+ + + E +R E Q+GK
Sbjct: 29 SDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVET----DQEGK- 83
Query: 289 KVWRIRSGQCLRR-LERAHSEG-----VTSLVFSRDGSQILSTSFDSTARIHGLKSGKLL 342
K W++ LR + S G VT L +S DG+ I++ + R+ K+G LL
Sbjct: 84 KYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALL 142
Query: 343 KEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFK 388
H + + + DG+ +++ + +W++ S +Q F+
Sbjct: 143 NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE 188
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 7/188 (3%)
Query: 201 PTTLSHTIKFGTKSHAE--CARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADE 258
P H + T +H E CA + V G ++V WD +S K Q D
Sbjct: 36 PGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKV-WD-ISHPGNKSPVSQLD- 92
Query: 259 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSE-GVTSLVFSR 317
+ D + + D L G + + +W + + + E S +L S
Sbjct: 93 -CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151
Query: 318 DGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
D S D + L + L+++F+GH+ + +NDG+++ T D TV+ WD
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Query: 378 LKSTDCLQ 385
L+ LQ
Sbjct: 212 LREGRQLQ 219
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 18/142 (12%)
Query: 176 LLPPGTQFDLFRGTAAMKQDVEDMYPTTLSHTIKFGTKSHAECA-RFSPDGQFLVSCSFD 234
LLP G L G A + D+ T + + + A A SPD + SC D
Sbjct: 105 LLPDGCT--LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD 162
Query: 235 GFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIR 294
G I VWD + L + F H + CI+ S D L +G D ++ W +R
Sbjct: 163 GNI-AVWDLHNQTLVRQ--------FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Query: 295 SGQCLRRLERAHSEGVTSLVFS 316
G+ L++ + TS +FS
Sbjct: 214 EGRQLQQHD------FTSQIFS 229
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280
+ P G++L +EV+ + K +YQ +H+ VL ++F+ +
Sbjct: 232 YCPTGEWLAVGMESSNVEVL------HVNKPDKYQ----LHLHESCVLSLKFAYCGKWFV 281
Query: 281 SGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIH 334
S +D + WR G + + S V S S D I++ S D A ++
Sbjct: 282 STGKDNLLNAWRTPYGASI--FQSKESSSVLSCDISVDDKYIVTGSGDKKATVY 333
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 109/252 (43%), Gaps = 71/252 (28%)
Query: 279 LASGSQDGKIKVWR---------IRSGQ------CLRRLER------------------- 304
+AS S+DG +++W + +GQ C +
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFAT 91
Query: 305 ----------AHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVND 354
H V SL F +DG ++S S+D TA++ K G L+ + H++ V D
Sbjct: 92 SGEDPLYTLIGHQGNVCSLSF-QDG-VVISGSWDKTAKV--WKEGSLVYNLQAHNASVWD 147
Query: 355 A-IFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSV--HLFPKNPD 411
A + + ++ +TAS+D T+K+W ++ ++TF N V HL +
Sbjct: 148 AKVVSFSENKFLTASADKTIKLW--QNDKVIKTFSGIH---------NDVVRHLAVVDDG 196
Query: 412 HIVVCNKTSSIYIMTLQ-GQVVKSFSSGKREGGDFVAACVS--PKGEWIYCVGEDRNLYC 468
H + C+ I ++ G V++++ EG + C+ P G+ + C GEDR +
Sbjct: 197 HFISCSNDGLIKLVDXHTGDVLRTY-----EGHESFVYCIKLLPNGDIVSC-GEDRTVRI 250
Query: 469 FSHQSGKLEHLM 480
+S ++G L+ ++
Sbjct: 251 WSKENGSLKQVI 262
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 259 TFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRD 318
T + H V + F ++ SGS D KVW+ G + L+ ++ + V S
Sbjct: 99 TLIGHQGNVCSLSFQ--DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFS 154
Query: 319 GSQILSTSFDSTARIHGLKSGKLLKEFRG-HSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
++ L+ S D T ++ ++ K++K F G H+ V +DG ++ S+D +K+ D
Sbjct: 155 ENKFLTASADKTIKL--WQNDKVIKTFSGIHNDVVRHLAVVDDG-HFISCSNDGLIKLVD 211
Query: 378 LKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVK 433
+ D L+T++ G ++ V + L P N D IV C + ++ I + + +K
Sbjct: 212 XHTGDVLRTYE------GHESFVYCIKLLP-NGD-IVSCGEDRTVRIWSKENGSLK 259
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 13/110 (11%)
Query: 224 DGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGS 283
DG F +SCS DG I++V D +G + + T+ H+ V CI+ + ++++ G
Sbjct: 195 DGHF-ISCSNDGLIKLV-DXHTGDVLR--------TYEGHESFVYCIKLLPNGDIVSCG- 243
Query: 284 QDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARI 333
+D +++W +G L+++ + + S+ +G I+ +S D+ RI
Sbjct: 244 EDRTVRIWSKENGS-LKQVITLPAISIWSVDCXSNGDIIVGSS-DNLVRI 291
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 30/161 (18%)
Query: 283 SQDGKIKVWRIRSGQCL---RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSG 339
S G +++W I + L + + H + V +L DG+Q +S D + ++ L
Sbjct: 112 SDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK 171
Query: 340 KLLKEFRGHSSYVN--------DAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPP 391
+LK + HSS VN D IF ++ D + +WD T KP P
Sbjct: 172 AVLKSYNAHSSEVNCVAACPGKDTIF-------LSCGEDGRILLWD--------TRKPKP 216
Query: 392 PLR----GGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQ 428
R D SV P+ D ++T ++ ++ ++
Sbjct: 217 ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 71/162 (43%), Gaps = 26/162 (16%)
Query: 274 RDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARI 333
+ E++ G +DG+I ++R + +R ++ A S + ++ F R +IL+ + +I
Sbjct: 159 NNPEIVTVG-EDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRT-PEILTVNSIGQLKI 216
Query: 334 -----HGLKSGKLLKEFRGHSSYVNDAI-------FTNDGSRVVTASSDCTVKVWDLKST 381
G + ++L S D + N V T D + +WD++
Sbjct: 217 WDFRQQGNEPSQIL-------SLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVR-- 267
Query: 382 DCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIY 423
Q P L+ +A + VH P NP+H+ C++ S++
Sbjct: 268 ---QGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLW 306
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 221 FSPD-GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 279
FSPD G+F+++ D I GK + L+Y D+ + + + + DS+
Sbjct: 214 FSPDSGEFVITVGSDRKISC----FDGKSGEFLKYIEDDQEPVQG-GIFALSW-LDSQKF 267
Query: 280 ASGSQDGKIKVWRIRSGQCLRR--LERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK 337
A+ D I+VW + + +C+++ L++ V + +I+S S D T + L
Sbjct: 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG 327
Query: 338 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVW 376
++LK GH N I + +++ S D + W
Sbjct: 328 HDEVLKTISGH----NKGITALTVNPLISGSYDGRIXEW 362
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 11/127 (8%)
Query: 393 LRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKR---EGGDFVAAC 449
+ G +N+ HL P S+ QG K FS+ R + G FV
Sbjct: 156 VSGHSQRINACHLKQSRPXRSXTVGDDGSVVFY--QGPPFK-FSASDRTHHKQGSFVRDV 212
Query: 450 -VSP-KGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIG---VTHHPHRNLLATYGE 504
SP GE++ VG DR + CF +SG+ ++ ++ V G AT G
Sbjct: 213 EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA 272
Query: 505 DCTMKLW 511
D T+++W
Sbjct: 273 DATIRVW 279
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 306 HSEG--VTSLVFSRD-GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN--- 359
H +G V + FS D G +++ D KSG+ LK V IF
Sbjct: 203 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 262
Query: 360 DGSRVVTASSDCTVKVWDLKSTDCLQTF 387
D + T +D T++VWD+ ++ C+Q +
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKW 290
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Query: 221 FSPD-GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEML 279
FSPD G+F+++ D I GK + L+Y D+ + + + + DS+
Sbjct: 214 FSPDSGEFVITVGSDRKISC----FDGKSGEFLKYIEDDQEPVQG-GIFALSW-LDSQKF 267
Query: 280 ASGSQDGKIKVWRIRSGQCLRR--LERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLK 337
A+ D I+VW + + +C+++ L++ V + +I+S S D T + L
Sbjct: 268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG 327
Query: 338 SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKS 380
++LK GH N I + +++ S D + W S
Sbjct: 328 HDEVLKTISGH----NKGITALTVNPLISGSYDGRIMEWSSSS 366
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 393 LRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKR---EGGDFVAAC 449
+ G +N+ HL P + S+ QG K FS+ R + G FV
Sbjct: 156 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY--QGPPFK-FSASDRTHHKQGSFVRDV 212
Query: 450 -VSP-KGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIG---VTHHPHRNLLATYGE 504
SP GE++ VG DR + CF +SG+ ++ ++ V G AT G
Sbjct: 213 EFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA 272
Query: 505 DCTMKLW 511
D T+++W
Sbjct: 273 DATIRVW 279
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 306 HSEG--VTSLVFSRD-GSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTN--- 359
H +G V + FS D G +++ D KSG+ LK V IF
Sbjct: 203 HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 262
Query: 360 DGSRVVTASSDCTVKVWDLKSTDCLQTF 387
D + T +D T++VWD+ ++ C+Q +
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKW 290
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 18/142 (12%)
Query: 263 HDETVLCIEFSRDSEMLASGSQDGK-IKVWRIRSGQCLRRLERAHSEG-VTSLVFSRDGS 320
H + + +R S+M+A+ SQDG I+V++ G +R R V + +S DGS
Sbjct: 194 HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGS 253
Query: 321 QILSTS-----------FDSTARIHGLKSGKLLKEFRGHSSYVNDAIFTND---GSRVVT 366
++ S D + H LK +K F+ S N + + G ++
Sbjct: 254 KLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW 313
Query: 367 ASSDCTVKVWDLKSTDCLQTFK 388
S V VW T ++TFK
Sbjct: 314 ISESSLVVVW--PHTRMIETFK 333
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 226 QFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285
L+S D I +VWD +G L +H +T+ +++SRD ++ + +D
Sbjct: 145 NVLLSAGXDNVI-LVWDVGTGAAVLTLGPD------VHPDTIYSVDWSRDGALICTSCRD 197
Query: 286 GKIKVWRIRSGQCLRRLERAHSEGVTSL--VFSRDGSQILSTSF 327
+++V R G + +R H EG + VF +G +IL+T F
Sbjct: 198 KRVRVIEPRKGTVVAEKDRPH-EGTRPVHAVFVSEG-KILTTGF 239
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 479 LMKVHEKDVIGVTHHPHR-NLLATYGEDCTMKLWK 512
L+ H V+ + PH N++A+ EDCT+ +W+
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWE 110
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 79/174 (45%), Gaps = 25/174 (14%)
Query: 221 FSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLA 280
+ D S SFD ++V WD + L+ + +ET H + + + ++A
Sbjct: 108 YPHDTGMFTSSSFDKTLKV-WD--TNTLQTADVFNFEETVYSHHMSPVSTKHC----LVA 160
Query: 281 SGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFDSTARI------ 333
G++ K+++ ++SG C L+ H + + ++ +S IL+T S DS ++
Sbjct: 161 VGTRGPKVQLCDLKSGSCSHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRA 219
Query: 334 ----------HGLKSGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWD 377
+G KS + H+ VN FT+DG ++T +D +++W+
Sbjct: 220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 66/177 (37%), Gaps = 63/177 (35%)
Query: 263 HDETVLCIEFS-RDSEMLASGSQDGKIKVWRIR-SGQCLRRLER--------------AH 306
H + +L + +S R +LA+ S D ++K+W +R + CL L++ AH
Sbjct: 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAH 244
Query: 307 SEGVTSLVFSRDGSQILSTSFDSTARI---------------------HGLK-------- 337
+ V L F+ DG +L+ D+ R+ GLK
Sbjct: 245 NGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCS 304
Query: 338 ------------------SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVW 376
SG+ + +GH V+ +F ++ + + S DC + W
Sbjct: 305 SEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 55/268 (20%), Positives = 102/268 (38%), Gaps = 38/268 (14%)
Query: 272 FSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTA 331
+ D+ M S S D +KVW + L+ A V+S S + +
Sbjct: 108 YPHDTGMFTSSSFDKTLKVWDTNT------LQTADVFNFEETVYSHHMSPVSTKHCLVAV 161
Query: 332 RIHG-------LKSGKLLKEFRGHSSYVNDAIFTNDGSRVV-TASSDCTVKVWDL-KSTD 382
G LKSG +GH + ++ ++ TAS+D VK+WD+ +++
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG 221
Query: 383 CLQTF-----KPPPPLRGGDASVN-----------SVHLFPKNPDH-IVVCNKTSSIYIM 425
CL T K + + + N +HL D+ + + N ++ +
Sbjct: 222 CLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTL 281
Query: 426 TLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEK 485
G+V + ++G F +C E+++ V + ++ SG+ ++K H K
Sbjct: 282 VNYGKVCNN----SKKGLKFTVSC-GCSSEFVF-VPYGSTIAVYTVYSGEQITMLKGHYK 335
Query: 486 DVIGVTHHPHRNLLATYGEDCTMKLWKP 513
V + L + DC + W P
Sbjct: 336 TVDCCVFQSNFQELYSGSRDCNILAWVP 363
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 264 DETVLCIEFSRDSE----MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF-SRD 318
DE ++ DS +LA G I++ + QC++ H + L F RD
Sbjct: 105 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRD 163
Query: 319 GSQILSTSFDSTARIHGLKSGKLLKEF---RGHSSYVNDAIFTNDGSRVVTASSDCTVKV 375
+ +LS S D R+ +++ L+ F GH V A + G ++++ D ++K+
Sbjct: 164 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKL 223
Query: 376 WDLKSTDCLQTFK 388
W + S + K
Sbjct: 224 WRINSKRMMNAIK 236
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 22/131 (16%)
Query: 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQ----YQADETFMMHDETVL 268
+++ +C R+ G ++S S + I V W GK++ D+ +++ T + +
Sbjct: 267 RNYVDCVRWL--GDLILSKSCENAI-VCWK--PGKMEDDIDKIKPSESNVTILGRFDYSQ 321
Query: 269 C----IEFSRD--SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQI 322
C + FS D +MLA G+Q GK+ VW + +E H T+L + G+ I
Sbjct: 322 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDL-------EVEDPHKAKCTTLTHHKCGAAI 374
Query: 323 LSTSFDSTARI 333
TSF + I
Sbjct: 375 RQTSFSRDSSI 385
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 264 DETVLCIEFSRDSE----MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF-SRD 318
DE ++ DS +LA G I++ + QC++ H + L F RD
Sbjct: 64 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRD 122
Query: 319 GSQILSTSFDSTARIHGLKSGKLLKEF---RGHSSYVNDAIFTNDGSRVVTASSDCTVKV 375
+ +LS S D R+ +++ L+ F GH V A + G ++++ D ++K+
Sbjct: 123 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKL 182
Query: 376 WDLKSTDCLQTFK 388
W + S + K
Sbjct: 183 WRINSKRMMNAIK 195
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 22/131 (16%)
Query: 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQ----YQADETFMMHDETVL 268
+++ +C R+ G ++S S + I V W GK++ D+ +++ T + +
Sbjct: 226 RNYVDCVRWL--GDLILSKSCENAI-VCWK--PGKMEDDIDKIKPSESNVTILGRFDYSQ 280
Query: 269 C----IEFSRD--SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQI 322
C + FS D +MLA G+Q GK+ VW + +E H T+L + G+ I
Sbjct: 281 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDL-------EVEDPHKAKCTTLTHHKCGAAI 333
Query: 323 LSTSFDSTARI 333
TSF + I
Sbjct: 334 RQTSFSRDSSI 344
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 264 DETVLCIEFSRDSE----MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF-SRD 318
DE ++ DS +LA G I++ + QC++ H + L F RD
Sbjct: 69 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRD 127
Query: 319 GSQILSTSFDSTARIHGLKSGKLLKEF---RGHSSYVNDAIFTNDGSRVVTASSDCTVKV 375
+ +LS S D R+ +++ L+ F GH V A + G ++++ D ++K+
Sbjct: 128 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKL 187
Query: 376 WDLKSTDCLQTFK 388
W + S + K
Sbjct: 188 WRINSKRMMNAIK 200
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 22/131 (16%)
Query: 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQ----YQADETFMMHDETVL 268
+++ +C R+ G ++S S + I V W GK++ D+ +++ T + +
Sbjct: 231 RNYVDCVRWL--GDLILSKSCENAI-VCWK--PGKMEDDIDKIKPSESNVTILGRFDYSQ 285
Query: 269 C----IEFSRD--SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQI 322
C + FS D +MLA G+Q GK+ VW + +E H T+L + G+ I
Sbjct: 286 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDL-------EVEDPHKAKCTTLTHHKCGAAI 338
Query: 323 LSTSFDSTARI 333
TSF + I
Sbjct: 339 RQTSFSRDSSI 349
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 264 DETVLCIEFSRDSE----MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF-SRD 318
DE ++ DS +LA G I++ + QC++ H + L F RD
Sbjct: 68 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRD 126
Query: 319 GSQILSTSFDSTARIHGLKSGKLLKEF---RGHSSYVNDAIFTNDGSRVVTASSDCTVKV 375
+ +LS S D R+ +++ L+ F GH V A + G ++++ D ++K+
Sbjct: 127 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKL 186
Query: 376 WDLKSTDCLQTFK 388
W + S + K
Sbjct: 187 WRINSKRMMNAIK 199
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 22/131 (16%)
Query: 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQ----YQADETFMMHDETVL 268
+++ +C R+ G ++S S + I V W GK++ D+ +++ T + +
Sbjct: 230 RNYVDCVRWL--GDLILSKSCENAI-VCWK--PGKMEDDIDKIKPSESNVTILGRFDYSQ 284
Query: 269 C----IEFSRD--SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQI 322
C + FS D +MLA G+Q GK+ VW + +E H T+L + G+ I
Sbjct: 285 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDL-------EVEDPHKAKCTTLTHHKCGAAI 337
Query: 323 LSTSFDSTARI 333
TSF + I
Sbjct: 338 RQTSFSRDSSI 348
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 264 DETVLCIEFSRDSE----MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVF-SRD 318
DE ++ DS +LA G I++ + QC++ H + L F RD
Sbjct: 68 DENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRD 126
Query: 319 GSQILSTSFDSTARIHGLKSGKLLKEF---RGHSSYVNDAIFTNDGSRVVTASSDCTVKV 375
+ +LS S D R+ +++ L+ F GH V A + G ++++ D ++K+
Sbjct: 127 PNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKL 186
Query: 376 WDLKSTDCLQTFK 388
W + S + K
Sbjct: 187 WRINSKRMMNAIK 199
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 22/131 (16%)
Query: 213 KSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQ----YQADETFMMHDETVL 268
+++ +C R+ G ++S S + I V W GK++ D+ +++ T + +
Sbjct: 230 RNYVDCVRWL--GDLILSKSCENAI-VCWK--PGKMEDDIDKIKPSESNVTILGRFDYSQ 284
Query: 269 C----IEFSRD--SEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQI 322
C + FS D +MLA G+Q GK+ VW + +E H T+L + G+ I
Sbjct: 285 CDIWYMRFSTDFWQKMLALGNQVGKLYVWDL-------EVEDPHKAKCTTLTHHKCGAAI 337
Query: 323 LSTSFDSTARI 333
TSF + I
Sbjct: 338 RQTSFSRDSSI 348
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 226 QFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285
L+S D I +VWD +G L +H +T+ +++SRD ++ + +D
Sbjct: 145 NVLLSAGCDNVI-LVWDVGTGAAVLTLGPD------VHPDTIYSVDWSRDGALICTSCRD 197
Query: 286 GKIKVWRIRSGQCLRRLERAHSEGVTSL--VFSRDGSQILSTSF 327
+++V R G + +R H EG + VF +G +IL+T F
Sbjct: 198 KRVRVIEPRKGTVVAEKDRPH-EGTRPVHAVFVSEG-KILTTGF 239
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 18/132 (13%)
Query: 270 IEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFD 328
++ S S M+ +G G + + + G+ L L R H + VT + + L+T S D
Sbjct: 215 LDVSASSRMVVTGDNVGNVILLNM-DGKELWNL-RMHKKKVTHVALNPCCDWFLATASVD 272
Query: 329 STARIHGLKSGKLLKEFRGHSSY---------VNDAIFTNDGSRVVTASSDCTVKVWDLK 379
T +I L+ + RG +S+ VN A F+ DG+R++T ++V+
Sbjct: 273 QTVKIWDLR------QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326
Query: 380 STDCLQTFKPPP 391
DC P P
Sbjct: 327 QWDCPLGLIPHP 338
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 18/132 (13%)
Query: 270 IEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFD 328
++ S S M+ +G G + + + G+ L L R H + VT + + L+T S D
Sbjct: 215 LDVSASSRMVVTGDNVGNVILLNM-DGKELWNL-RMHKKKVTHVALNPCCDWFLATASVD 272
Query: 329 STARIHGLKSGKLLKEFRGHSSY---------VNDAIFTNDGSRVVTASSDCTVKVWDLK 379
T +I L+ + RG +S+ VN A F+ DG+R++T ++V+
Sbjct: 273 QTVKIWDLR------QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 326
Query: 380 STDCLQTFKPPP 391
DC P P
Sbjct: 327 QWDCPLGLIPHP 338
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 18/132 (13%)
Query: 270 IEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQILST-SFD 328
++ S S M+ +G G + + + G+ L L R H + VT + + L+T S D
Sbjct: 216 LDVSASSRMVVTGDNVGNVILLNM-DGKELWNL-RMHKKKVTHVALNPCCDWFLATASVD 273
Query: 329 STARIHGLKSGKLLKEFRGHSSY---------VNDAIFTNDGSRVVTASSDCTVKVWDLK 379
T +I L+ + RG +S+ VN A F+ DG+R++T ++V+
Sbjct: 274 QTVKIWDLR------QVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS 327
Query: 380 STDCLQTFKPPP 391
DC P P
Sbjct: 328 QWDCPLGLIPHP 339
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 29/203 (14%)
Query: 225 GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS--RDSEMLASG 282
G+ + +CS D I++ + G+ K + +T H+ V ++++ + +LAS
Sbjct: 21 GKRMATCSSDKTIKIF--EVEGETHKLI-----DTLTGHEGPVWRVDWAHPKFGTILASC 73
Query: 283 SQDGKIKVWRIRSGQCLR-RLERAHSEGVTSLVFS--RDGSQILSTSFDSTARIHGLKSG 339
S DGK+ +W+ +G+ + + HS V S+ ++ G +L S D + K
Sbjct: 74 SYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN 133
Query: 340 KLLKE--FRGHSSYVNDAIF-------------TNDGSRVVTASSDCTVKVWDLKSTDCL 384
H+ VN A + T + + VT +D VK+W S
Sbjct: 134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD--A 191
Query: 385 QTFKPPPPLRGGDASVNSVHLFP 407
QT+ L G V V P
Sbjct: 192 QTYVLESTLEGHSDWVRDVAWSP 214
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 29/203 (14%)
Query: 225 GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS--RDSEMLASG 282
G+ L +CS D I++ + G+ K + +T H+ V ++++ + +LAS
Sbjct: 21 GKRLATCSSDKTIKIF--EVEGETHKLI-----DTLTGHEGPVWRVDWAHPKFGTILASC 73
Query: 283 SQDGKIKVWRIRSGQCLR-RLERAHSEGVTSLVFS--RDGSQILSTSFDSTARIHGLKSG 339
S DGK+ +W+ +G+ + + HS V S+ ++ G +L S D + K
Sbjct: 74 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133
Query: 340 KLLKE--FRGHSSYVNDAIF-------------TNDGSRVVTASSDCTVKVWDLKSTDCL 384
H+ VN A + T + + VT +D VK+W S
Sbjct: 134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD--A 191
Query: 385 QTFKPPPPLRGGDASVNSVHLFP 407
QT+ L G V V P
Sbjct: 192 QTYVLESTLEGHSDWVRDVAWSP 214
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 63/165 (38%), Gaps = 8/165 (4%)
Query: 348 HSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFP 407
H V+ + G++ V+ S D +KVWDL L ++ R A V V P
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSY------RAHAAQVTCVAASP 179
Query: 408 KNPDHIVVCNKTSSIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVG-EDRNL 466
+ C++ + I + + S G + P+ ++ G E+ +
Sbjct: 180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV 239
Query: 467 YCFSHQSGKLEHLMKVHEKDVIGVTHHPHR-NLLATYGEDCTMKL 510
+S VH + V G+ PH LA+ EDC++ +
Sbjct: 240 SLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAV 284
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 282 GSQDGKIKVWRIRSGQCL---RRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKS 338
S G +++W + + L + + H + V+++ G+Q +S S D ++ L
Sbjct: 99 ASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158
Query: 339 GKLLKEFRGHSSYVN-DAIFTNDGSRVVTASSDCTVKVWDLK 379
+L +R H++ V A + S ++ S D + +WD +
Sbjct: 159 QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR 200
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 81/203 (39%), Gaps = 29/203 (14%)
Query: 225 GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS--RDSEMLASG 282
G+ +CS D I++ + G+ K + +T H+ V ++++ + +LAS
Sbjct: 21 GKRXATCSSDKTIKIF--EVEGETHKLI-----DTLTGHEGPVWRVDWAHPKFGTILASC 73
Query: 283 SQDGKIKVWRIRSGQCLR-RLERAHSEGVTSLVFS--RDGSQILSTSFDSTARIHGLKSG 339
S DGK+ +W+ +G+ + + HS V S+ ++ G +L S D + K
Sbjct: 74 SYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKEN 133
Query: 340 KLLKE--FRGHSSYVNDAIF-------------TNDGSRVVTASSDCTVKVWDLKSTDCL 384
H+ VN A + T + + VT +D VK+W S
Sbjct: 134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD--A 191
Query: 385 QTFKPPPPLRGGDASVNSVHLFP 407
QT+ L G V V P
Sbjct: 192 QTYVLESTLEGHSDWVRDVAWSP 214
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 24/158 (15%)
Query: 239 VVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE-MLASGSQDGKIKVWRIRSGQ 297
++WD + K T H V C+ F+ SE +LA+GS D + +W +R+ +
Sbjct: 257 MIWDTRNNNTSK-----PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 311
Query: 298 CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE------------- 344
+H + + + +S IL++S + R+H K+ +E
Sbjct: 312 LKLHSFESHKDEIFQVQWSPHNETILASS-GTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 370
Query: 345 ---FRGHSSYVNDAIFT-NDGSRVVTASSDCTVKVWDL 378
GH++ ++D + N+ + + S D ++VW +
Sbjct: 371 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 24/158 (15%)
Query: 239 VVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE-MLASGSQDGKIKVWRIRSGQ 297
++WD + K T H V C+ F+ SE +LA+GS D + +W +R+ +
Sbjct: 259 MIWDTRNNNTSK-----PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 313
Query: 298 CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE------------- 344
+H + + + +S IL++S + R+H K+ +E
Sbjct: 314 LKLHSFESHKDEIFQVQWSPHNETILASS-GTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 372
Query: 345 ---FRGHSSYVNDAIFT-NDGSRVVTASSDCTVKVWDL 378
GH++ ++D + N+ + + S D ++VW +
Sbjct: 373 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 25/134 (18%)
Query: 278 MLASGSQDGKIKVWRIRSGQCLRRLERAHS-----EGVTSLVFSRDGSQILSTSFDSTA- 331
++A+G +G +++ + + + L E HS + S+ FS GS +L+ + DS +
Sbjct: 209 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSF 267
Query: 332 ------------RIHGLK-----SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVK 374
RI L S L EF HSS+V F + G + +A D ++
Sbjct: 268 GCITLYETEFGERIGSLSVPTHSSQASLGEF-AHSSWVMSLSFNDSGETLCSAGWDGKLR 326
Query: 375 VWDLKSTDCLQTFK 388
WD+K+ + + T
Sbjct: 327 FWDVKTKERITTLN 340
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 255 QADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL 302
QA H V+ + F+ E L S DGK++ W +++ + + L
Sbjct: 292 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 339
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 29/203 (14%)
Query: 225 GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS--RDSEMLASG 282
G+ L +CS D I++ + G+ K + +T H+ V ++++ + +LAS
Sbjct: 23 GKRLATCSSDKTIKIF--EVEGETHKLI-----DTLTGHEGPVWRVDWAHPKFGTILASC 75
Query: 283 SQDGKIKVWRIRSGQCLR-RLERAHSEGVTSLVFS--RDGSQILSTSFDSTARIHGLKSG 339
S DGK+ +W+ +G+ + + HS V S+ ++ G +L S D + K
Sbjct: 76 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 135
Query: 340 KLLKE--FRGHSSYVNDAIF-------------TNDGSRVVTASSDCTVKVWDLKSTDCL 384
H+ VN A + T + + VT +D VK+W S
Sbjct: 136 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD--A 193
Query: 385 QTFKPPPPLRGGDASVNSVHLFP 407
QT+ L G V V P
Sbjct: 194 QTYVLESTLEGHSDWVRDVAWSP 216
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 339 GKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLK 379
G ++ H+ ++DA+ G R+ T SSD T+K+++++
Sbjct: 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE 41
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 24/158 (15%)
Query: 239 VVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFSRDSE-MLASGSQDGKIKVWRIRSGQ 297
++WD + K T H V C+ F+ SE +LA+GS D + +W +R+ +
Sbjct: 261 MIWDTRNNNTSK-----PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 315
Query: 298 CLRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKE------------- 344
+H + + + +S IL++S + R+H K+ +E
Sbjct: 316 LKLHSFESHKDEIFQVQWSPHNETILASS-GTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 374
Query: 345 ---FRGHSSYVNDAIFT-NDGSRVVTASSDCTVKVWDL 378
GH++ ++D + N+ + + S D ++VW +
Sbjct: 375 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 25/134 (18%)
Query: 278 MLASGSQDGKIKVWRIRSGQCLRRLERAHS-----EGVTSLVFSRDGSQILSTSFDSTA- 331
++A+G +G +++ + + + L E HS + S+ FS GS +L+ + DS +
Sbjct: 199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSF 257
Query: 332 ------------RIHGLK-----SGKLLKEFRGHSSYVNDAIFTNDGSRVVTASSDCTVK 374
RI L S L EF HSS+V F + G + +A D ++
Sbjct: 258 GCITLYETEFGERIGSLSVPTHSSQASLGEF-AHSSWVMSLSFNDSGETLCSAGWDGKLR 316
Query: 375 VWDLKSTDCLQTFK 388
WD+K+ + + T
Sbjct: 317 FWDVKTKERITTLN 330
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 255 QADETFMMHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQCLRRL 302
QA H V+ + F+ E L S DGK++ W +++ + + L
Sbjct: 282 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 329
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 299 LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGK--LLKEFRGHSSYVNDAI 356
+ ++ +H + + G+++ + S D + +I +++G L+ + RGH V
Sbjct: 5 INTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVA 64
Query: 357 FTND--GSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIV 414
+ + G+ + + S D V +W ++ T++ G D+SVNSV P + I+
Sbjct: 65 WAHPMYGNILASCSYDRKVIIWREENG----TWEKSHEHAGHDSSVNSVCWAPHDYGLIL 120
Query: 415 VCNKT-SSIYIMTLQGQ 430
C + +I ++T G+
Sbjct: 121 ACGSSDGAISLLTYTGE 137
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 82/203 (40%), Gaps = 29/203 (14%)
Query: 225 GQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCIEFS--RDSEMLASG 282
G+ L +CS D I++ + G+ K + +T H+ V ++++ + +LAS
Sbjct: 21 GKRLATCSSDKTIKIF--EVEGETHKLI-----DTLTGHEGPVWRVDWAHPKFGTILASC 73
Query: 283 SQDGKIKVWRIRSGQCLR-RLERAHSEGVTSLVFS--RDGSQILSTSFDSTARIHGLKSG 339
S DGK+ +W+ +G+ + + HS V S+ ++ G +L S D + K
Sbjct: 74 SYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN 133
Query: 340 KLLKE--FRGHSSYVNDAIF-------------TNDGSRVVTASSDCTVKVWDLKSTDCL 384
H+ VN A + T + + VT +D VK+W S
Sbjct: 134 GTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD--A 191
Query: 385 QTFKPPPPLRGGDASVNSVHLFP 407
QT+ L G V V P
Sbjct: 192 QTYVLESTLEGHSDWVRDVAWSP 214
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 346 RGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLK 379
H+ ++DA+ G R+ T SSD T+K+++++
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE 39
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 39/176 (22%)
Query: 205 SHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHD 264
SH++ T + C F+P +F+++ +WD + KLK +F H
Sbjct: 266 SHSVDAHT-AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL-------HSFESHK 317
Query: 265 ETVLCIEFSRDSE-MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQIL 323
+ + +++S +E +LAS D ++ VW + + E A +G L+F
Sbjct: 318 DEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDA-EDGPPELLF-------- 368
Query: 324 STSFDSTARIHGLKSGKLLKEFRGHSSYVNDAIFT-NDGSRVVTASSDCTVKVWDL 378
IHG GH++ ++D + N+ + + S D ++VW +
Sbjct: 369 ---------IHG-----------GHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
>pdb|1POO|A Chain A, Thermostable Phytase From Bacillus Sp
pdb|2POO|A Chain A, Thermostable Phytase In Fully Calcium Loaded State
Length = 355
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 396 GDASVN-SVHLFPKNPDH--IVVCNKTSSIYIMTLQGQVVKSFSSGK 439
GDA+ + ++ L PKNP + ++ NK S + + +L+G+++ S+ +GK
Sbjct: 23 GDAADDPAIWLDPKNPQNSKLITTNKKSGLAVYSLEGKMLHSYHTGK 69
>pdb|1QLG|A Chain A, Crystal Structure Of Phytase With Magnesium From Bacillus
Amyloliquefaciens
Length = 355
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 396 GDASVN-SVHLFPKNPDH--IVVCNKTSSIYIMTLQGQVVKSFSSGK 439
GDA+ + ++ L PKNP + ++ NK S + + +L+G+++ S+ +GK
Sbjct: 23 GDAADDPAIWLDPKNPQNSKLITTNKKSGLAVYSLEGKMLHSYHTGK 69
>pdb|1CVM|A Chain A, Cadmium Inhibited Crystal Structure Of Phytase From
Bacillus Amyloliquefaciens
pdb|1H6L|A Chain A, Beta-Propeller Phytase In Complex With Phosphate And
Calcium Ions
Length = 353
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 32/47 (68%), Gaps = 3/47 (6%)
Query: 396 GDASVN-SVHLFPKNPDH--IVVCNKTSSIYIMTLQGQVVKSFSSGK 439
GDA+ + ++ L PKNP + ++ NK S + + +L+G+++ S+ +GK
Sbjct: 23 GDAADDPAIWLDPKNPQNSKLITTNKKSGLAVYSLEGKMLHSYHTGK 69
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 263 HDETVLCIEFSRDSE-MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQ 321
H V C+ F+ SE +LA+GS D + +W +R+ + +H + + + +S
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNET 333
Query: 322 ILSTS 326
IL++S
Sbjct: 334 ILASS 338
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 57/297 (19%), Positives = 116/297 (39%), Gaps = 37/297 (12%)
Query: 246 GKLKKDLQYQADETFMM-HDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQC------ 298
G + K ++ TF HD+ L + + + A+ S D +++W + +
Sbjct: 4 GSMVKLAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS 63
Query: 299 ------LRRLERAHSEGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLKEFRGHSSYV 352
L+ +H+ + + ++ ST+ + A + F HSS V
Sbjct: 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAI-------NSMARFSNHSSSV 116
Query: 353 NDAIFTNDGSRVV-TASSDCTVKVWDL-KSTDCLQTFKPPPPLRGGDASVNSVHLFPKNP 410
F V+ + ++ + +WD+ K T+ + P P + +SV+ V N
Sbjct: 117 KTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM-SSVDEVISLAWNQ 175
Query: 411 D--HIVVCNKTS---SIYIMTLQGQVV----KSFSSGKREGGDFVAACVSPKGEWIYCVG 461
H+ +S SI+ + + +V+ S +SG ++ V G
Sbjct: 176 SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG 235
Query: 462 EDRN----LYCFSHQSGKLEHLMKVHEKDVIGVTH-HPHRNLLATYGEDCTMKLWKP 513
D + ++ + + L+ L + H+K ++ + H +LL + G D T+ LW P
Sbjct: 236 SDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 263 HDETVLCIEFSRDSE-MLASGSQDGKIKVWRIRSGQCLRRLERAHSEGVTSLVFSRDGSQ 321
H V C+ F+ SE +LA+GS D + +W +R+ + +H + + + +S
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNET 333
Query: 322 ILSTS 326
IL++S
Sbjct: 334 ILASS 338
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 15/196 (7%)
Query: 208 IKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETV 267
IK + AR+ P +++ +V+DY K D + + +
Sbjct: 121 IKINHEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQK 180
Query: 268 LCIEFSRDSEM---LASGSQDGKIKVWRIRSGQCLRRLERA------HSEGVTSLVFSRD 318
S +S + L S S D + +W I +G ++ A HS V + +
Sbjct: 181 EGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLL 240
Query: 319 GSQIL-STSFDSTARIHGLKSGKLLKE---FRGHSSYVNDAIFTNDGSRVV-TASSDCTV 373
+ S + D I +S K H++ VN F ++ T S+D TV
Sbjct: 241 HESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTV 300
Query: 374 KVWDLKSTDC-LQTFK 388
+WDL++ L TF+
Sbjct: 301 ALWDLRNLKLKLHTFE 316
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 308 EGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK--EFRGHSSYVNDAIFTNDGSRVV 365
E ++ +++D +QI + I+ K ++ E + H+ V + D +R+V
Sbjct: 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 68
Query: 366 TASSDCTVKVWDLKSTDCLQTFKP 389
T +D VW LK +T+KP
Sbjct: 69 TCGTDRNAYVWTLKG----RTWKP 88
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 308 EGVTSLVFSRDGSQILSTSFDSTARIHGLKSGKLLK--EFRGHSSYVNDAIFTNDGSRVV 365
E ++ +++D +QI + I+ K ++ E + H+ V + D +R+V
Sbjct: 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIV 68
Query: 366 TASSDCTVKVWDLKSTDCLQTFKP 389
T +D VW LK +T+KP
Sbjct: 69 TCGTDRNAYVWTLKG----RTWKP 88
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 286 GKIKVWRIRSG--QCLRRLERAHSEGVTSLVFSRDGSQILSTS-FDSTARIHGLKSGKL- 341
G I+++ I+ G + LR +E+A + + + L+T F I L++ ++
Sbjct: 44 GVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMP 103
Query: 342 LKEFRGHSSYVN------DAIFTNDGSRVVTASSDCTVKVWDLKSTD 382
+ +GH +N +VT S D TVKVWD + D
Sbjct: 104 VYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD 150
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 191 AMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKK 250
+ ++ E ++ + + G K E A ++ D F + EV+WDY+ G+++K
Sbjct: 54 GLDENGEPVHSSXYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEK 113
Query: 251 DLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285
++ + V +EF+ DS+ QD
Sbjct: 114 ----AGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD 144
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 191 AMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKK 250
+ ++ E ++ + + G K E A ++ D F + EV+WDY+ G+++K
Sbjct: 54 GLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEK 113
Query: 251 DLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285
++ + V +EF+ DS+ QD
Sbjct: 114 ----AGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD 144
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 191 AMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKK 250
+ ++ E ++ + + G K E A ++ D F + EV+WDY+ G+++K
Sbjct: 54 GLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEK 113
Query: 251 DLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285
++ + V +EF+ DS+ QD
Sbjct: 114 ----AGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD 144
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 191 AMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKK 250
+ ++ E ++ + + G K E A ++ D F + EV+WDY+ G+++K
Sbjct: 59 GLDENGEPVHSSMYRYLWSSGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEK 118
Query: 251 DLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285
++ + V +EF+ DS+ QD
Sbjct: 119 ----AGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD 149
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 191 AMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKK 250
+ ++ E ++ + + G K E A ++ D F + EV+WDY+ G+++K
Sbjct: 59 GLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEK 118
Query: 251 DLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285
++ + V +EF+ DS+ QD
Sbjct: 119 ----AGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD 149
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 191 AMKQDVEDMYPTTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKK 250
+ ++ E ++ + + G K E A ++ D F + EV+WDY+ G+++K
Sbjct: 59 GLDENGEPVHSSMYRYLWSKGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEK 118
Query: 251 DLQYQADETFMMHDETVLCIEFSRDSEMLASGSQD 285
++ + V +EF+ DS+ QD
Sbjct: 119 ----AGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD 149
>pdb|1HNO|A Chain A, Crystal Structure Of Peroxisomal Delta3-delta2-enoyl-coa
Isomerase From Saccharomyces Cerevisiae
pdb|1HNU|A Chain A, Crystal Structure Of Peroxisomal Delta3-Delta2-Enoyl-Coa
Isomerase From Saccharomyces Cerevisiae
pdb|1K39|A Chain A, The Structure Of Yeast Delta3-delta2-enoyl-coa Isomerase
Complexed With Octanoyl-coa
pdb|1K39|B Chain B, The Structure Of Yeast Delta3-delta2-enoyl-coa Isomerase
Complexed With Octanoyl-coa
pdb|1K39|C Chain C, The Structure Of Yeast Delta3-delta2-enoyl-coa Isomerase
Complexed With Octanoyl-coa
pdb|1PJH|A Chain A, Structural Studies On Delta3-Delta2-Enoyl-Coa Isomerase:
The Variable Mode Of Assembly Of The Trimeric Disks Of
The Crotonase Superfamily
pdb|1PJH|B Chain B, Structural Studies On Delta3-Delta2-Enoyl-Coa Isomerase:
The Variable Mode Of Assembly Of The Trimeric Disks Of
The Crotonase Superfamily
pdb|1PJH|C Chain C, Structural Studies On Delta3-Delta2-Enoyl-Coa Isomerase:
The Variable Mode Of Assembly Of The Trimeric Disks Of
The Crotonase Superfamily
Length = 280
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 202 TTLSHTIKFGTKSHAECARFSPDGQFLVSCSFDGFI 237
TT+S +KFGT + EC F+ ++ + C +GFI
Sbjct: 161 TTVSLPLKFGTNTTYECLMFNKPFKYDIMCE-NGFI 195
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 211 GTKSHAECARFSPDGQFLVSCSFDGFIEVVWDYLSGKLKKDLQYQADETFMMHDETVLCI 270
G K E A ++ D F + EV+WDY+ G+++K ++ + V +
Sbjct: 79 GPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEK----AGVRKYIRFNTAVRHV 134
Query: 271 EFSRDSEMLASGSQD 285
EF+ DS+ QD
Sbjct: 135 EFNEDSQTFTVTVQD 149
>pdb|1VL2|A Chain A, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|B Chain B, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|C Chain C, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|D Chain D, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
Length = 421
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 462 EDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHP 494
ED NL SH++GKLE + ++DV T P
Sbjct: 191 EDENLMHISHEAGKLEDPAHIPDEDVFTWTVSP 223
>pdb|3VUO|A Chain A, Crystal Structure Of Nontoxic Nonhemagglutinin
Subcomponent (Ntnha) From Clostridium Botulinum Serotype
D Strain 4947
Length = 1196
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 15 LQFCKENSLQQTFQTLQNECQVSLNTVD------SIETFVADI 51
L+ KE + ++TF L NE Q+S+N VD SI FV DI
Sbjct: 719 LKLIKE-TTEKTFIDLSNESQISMNRVDNFLNKASICVFVEDI 760
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 240 VWDYLSGKLKKDLQYQADETFM-MHDETVLCIEFSRDSEMLASGSQDGKIKVWRIRSGQC 298
VW KLKK L + + M D + + + +D+E+ ++ + + W ++ G
Sbjct: 483 VWLAYQNKLKKSLGLTSVTSEMRFFDVSGVTVTDLQDAELQVKAAEKSEFREWILQWGPL 542
Query: 299 LRRLERAHSEGVTSL 313
R LER E V +L
Sbjct: 543 HRVLERKAPERVNAL 557
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 34 CQVSLNTVDSIETFVADINSGRWDAILPQVAQLKLPRNKLEDL 76
Q LN++D I +DI S + LP V +L L NKL D+
Sbjct: 38 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,071,734
Number of Sequences: 62578
Number of extensions: 615491
Number of successful extensions: 2303
Number of sequences better than 100.0: 134
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1208
Number of HSP's gapped (non-prelim): 468
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)